Psyllid ID: psy8551

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-
Protein Sequence
MLVDAGQELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEcccEEEccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccHHHcccccccHHccccccccccccHHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEccccccccccccHHHccccccccEEEccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEcccccccccccccEEEcccccccccccHHHccccccccEEEccccccccccccccccccccEEEccccccccccccHHHHHHHHHcccccEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccEEEEccccccccccHHHHHHccEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEEccccccccccccccccHHEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccEEccccccccccccEEEcccccccccccHHHHcccccccEEEEccccccccccHHHHHccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHcccccccEEEcccccccccccHHHHHccccccEEEccccccccccHHHcccccccEEEcccccccccccHHHHHHHHHHcccccccccccHHHccccHccccHHHcc
Coil and Loop (DISEMBL)
MLVDAGqelrskcmnpyepsrfstrdpscnlqeanldvipshsnpsiqRLVLStnriktvdsAIPIYLSLqhvdlshttwliipiggfepQEKLVELQLNhnkhfpqqivcsiisprrveifgqnriSRIDQACFEGLTALRILylddnqlrsvptpsfIYLGMLAELRVGLNVFttladgafnglgRLSALdlrgagltnisdnafrGLSGLRSLvltdnrlqsiptkqlskltrleeleigqnGFSMLEAGCFKGLSYLKRLEItgasnltrvrkgafadnlnletltlnknpklktieegalvglpnlyhlnlkenaFTSFSesmlawpelrtidiaenpiecgcNILWLREMLVRrntsavfcnspaplkyKSLISLSAEdlgcagagltnisdnafrGLSGLRSLvltdnrlqsiptkqlskltrleeleigqnGFSMLEAGCFKGLSYLKRLEItgasnltrvrkgafadnlnletltlnknpklkiieedalvglpnlyhlnlkenaFTSFSesmlawpelrtidiaenpiecgcNILWLREMLVRrntsavfcnspaplkyKSLISLSAEDLG
Flexible Loop (DISEMBL)
mlvdagqelrskcmnpyepsrfSTRDPSCNLQEANldvipshsnpSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSlvltdnrlqsiptkqlskltrLEELEIGQNGFSMLEAGCFKGLSYLKRLEITgasnltrvrkgafadnlnletltlnknpklKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSlvltdnrlqsiptkqlskltrLEELEIGQNGFSMLEAGCFKGLSYLKRLEITgasnltrvrkgafadnlnletltlnknpklKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAvfcnspaplkykslislsaedlg
Low Complexity Region (SEG)
MLVDAGQELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADnlnletltlnknpklktIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADnlnletltlnknpklkIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLG
Disordered region (IsUnstruct)
**********************************************IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL*********
Disordered Region (DISOPRED)
MLVDA**ELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLG
Disordered Region (DISEMBL)
MLVDAGQELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLG
Disordered Region (DISPRO)
*L***GQELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSA**L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLVDAGQELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	581	2.2.26 [Sep-21-2011]
O75093	1534	Slit homolog 1 protein OS	yes	N/A	0.660	0.250	0.28	2e-30
O88279	1531	Slit homolog 1 protein OS	yes	N/A	0.660	0.250	0.28	3e-30
Q9WVC1	766	Slit homolog 2 protein (F	no	N/A	0.654	0.496	0.274	3e-28
O88280	1523	Slit homolog 3 protein OS	no	N/A	0.657	0.250	0.277	4e-28
Q9R1B9	1521	Slit homolog 2 protein OS	yes	N/A	0.654	0.249	0.279	4e-28
O75094	1523	Slit homolog 3 protein OS	no	N/A	0.662	0.252	0.252	7e-28
Q9WVB4	1523	Slit homolog 3 protein OS	no	N/A	0.657	0.250	0.275	8e-28
O94813	1529	Slit homolog 2 protein OS	no	N/A	0.654	0.248	0.272	1e-27
A0N0X6	716	Leucine-rich repeat neuro	no	N/A	0.554	0.449	0.317	2e-27
Q6UXK5	716	Leucine-rich repeat neuro	no	N/A	0.554	0.449	0.317	2e-27

>sp|O75093|SLIT1_HUMAN Slit homolog 1 protein OS=Homo sapiens GN=SLIT1 PE=2 SV=4

 Score =  134 bits (337), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 196/425 (46%), Gaps = 41/425 (9%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           L+L G  +T I  N F GL  LR L L +N++ ++       +  LE L + +N   ML 
Sbjct: 66  LELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLHMLP 125

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F+    L RL+++  + +  + + AF    +L+ L L+KN ++  IEEGA   L  L
Sbjct: 126 ELLFQNNQALSRLDLS-ENAIQAIPRKAFRGATDLKNLQLDKN-QISCIEEGAFRALRGL 183

Query: 312 YHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  T+   S     P+LRT  +  N + C C++ WL + L +R T  +F  C+
Sbjct: 184 EVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCS 243

Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLT---------------------NISDNAFRGLSGL 407
            PA L+  ++  +   +  C+G G                        I D   +GL+ +
Sbjct: 244 GPASLRGLNVAEVQKSEFSCSGQGEAGRVPTCTLSSGSCPAMCTCSNGIVDCRGKGLTAI 303

Query: 408 RS--------LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
            +        + L  N ++SIP    S   +L  +++  N  + +    F+GL  L  L 
Sbjct: 304 PANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLV 363

Query: 460 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519
           + G + +T + +G F     L+ L LN N K+  I  DA   L NL  L+L +N   S +
Sbjct: 364 LYG-NKITDLPRGVFGGLYTLQLLLLNAN-KINCIRPDAFQDLQNLSLLSLYDNKIQSLA 421

Query: 520 E-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRN---TSAVFCNSPAPLKYKSLISL 575
           + +  +   ++T+ +A+NP  C CN+ WL + L R N   TS   C SP  L  K +  +
Sbjct: 422 KGTFTSLRAIQTLHLAQNPFICDCNLKWLADFL-RTNPIETSGARCASPRRLANKRIGQI 480

Query: 576 SAEDL 580
            ++  
Sbjct: 481 KSKKF 485

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions (By similarity). SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.
Homo sapiens (taxid: 9606)

>sp|O88279|SLIT1_RAT Slit homolog 1 protein OS=Rattus norvegicus GN=Slit1 PE=1 SV=1

 Score =  133 bits (335), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 197/425 (46%), Gaps = 41/425 (9%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           L+L G  +T I  N F GL  LR L L +N++ ++       +  LE L + +N   +L 
Sbjct: 66  LELNGNNITRIHKNDFAGLKQLRVLQLMENQIGAVERGAFDDMKELERLRLNRNQLQVLP 125

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F+    L RL+++  ++L  V + AF    +L+ L L+KN ++  IEEGA   L  L
Sbjct: 126 ELLFQNNQALSRLDLS-ENSLQAVPRKAFRGATDLKNLQLDKN-QISCIEEGAFRALRGL 183

Query: 312 YHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  T+   S     P+LRT  +  N + C C++ WL + L +R T  +F  C+
Sbjct: 184 EVLTLNNNNITTIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPTIGLFTQCS 243

Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLT---------------------NISDNAFRGLSGL 407
            PA L+  ++  +   +  C+G G                        I D   +GL+ +
Sbjct: 244 GPASLRGLNVAEVQKSEFSCSGQGEAAQVPACTLSSGSCPAMCSCSNGIVDCRGKGLTAI 303

Query: 408 RS--------LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
            +        + L  N ++SIP    S   +L  +++  N  + +    F+GL  L  L 
Sbjct: 304 PANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEIAPDAFQGLRSLNSLV 363

Query: 460 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519
           + G + +T + +G F     L+ L LN N K+  I  DA   L NL  L+L +N   S +
Sbjct: 364 LYG-NKITDLPRGVFGGLYTLQLLLLNAN-KINCIRPDAFQDLQNLSLLSLYDNKIQSLA 421

Query: 520 E-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRN---TSAVFCNSPAPLKYKSLISL 575
           + +  +   ++T+ +A+NP  C CN+ WL + L R N   T+   C SP  L  K +  +
Sbjct: 422 KGTFTSLRAIQTLHLAQNPFICDCNLKWLADFL-RTNPIETTGARCASPRRLANKRIGQI 480

Query: 576 SAEDL 580
            ++  
Sbjct: 481 KSKKF 485

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 together seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb.

Rattus norvegicus (taxid: 10116)

>sp|Q9WVC1|SLIT2_RAT Slit homolog 2 protein (Fragment) OS=Rattus norvegicus GN=Slit2 PE=1 SV=3

 Score =  127 bits (318), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 192/426 (45%), Gaps = 46/426 (10%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL G  +T I+   F GL  LR L L +N++ +I       L  LE L + +N   +  
Sbjct: 60  LDLNGNNITRITKTDFAGLRHLRILQLMENKISTIERGAFHDLKELERLRLNRNNLQLFP 119

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F G + L RL+++  + +  + + AF   ++++ L L+ N ++  IE+GA   L +L
Sbjct: 120 ELLFLGTAKLYRLDLS-ENQIQAIPRKAFRGAVDIKNLQLDYN-QISCIEDGAFRALRDL 177

Query: 312 YHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  T  S  S    P+LRT  +  N + C C++ WL + L +R    ++  C 
Sbjct: 178 EVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCM 237

Query: 369 SPAPLK--------------------YKSLISLSAEDLGCA-------------GAGLTN 395
            P+ L+                    ++S ++ S   L C              G GLT 
Sbjct: 238 GPSHLRGHNVAEVQKREFVCSDEEEGHQSFMAPSCSVLHCPIACTCSNNIVDCRGKGLTE 297

Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 455
           I  N    ++ +R   L  N ++ IP    S   +L  L++  N  S L    F+GL  L
Sbjct: 298 IPTNLPETITEIR---LEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSL 354

Query: 456 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF 515
             L + G + +T + K  F    +L+ L LN N K+  +  DA   L NL  L+L +N  
Sbjct: 355 NSLVLYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKL 412

Query: 516 TSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSL 572
            + ++    A   ++T+ +A+NP  C C++ WL + L      TS   C SP  L  K +
Sbjct: 413 QTVAKGTFSALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRI 472

Query: 573 ISLSAE 578
             + ++
Sbjct: 473 GQIKSK 478

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. Seems to be involved in regulating leukocyte migration.

Rattus norvegicus (taxid: 10116)

>sp|O88280|SLIT3_RAT Slit homolog 3 protein OS=Rattus norvegicus GN=Slit3 PE=2 SV=1

 Score =  127 bits (318), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 192/425 (45%), Gaps = 43/425 (10%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL    +T I+   F GL  LR L L DN++  I       L +LE L + +N   +L 
Sbjct: 66  LDLDRNNITRITKMDFTGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKNKLQVLP 125

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F+    L RL+++  + +  + + AF     ++ L L+ N  +  IE+GA   L +L
Sbjct: 126 ELLFQSTPKLTRLDLS-ENQIQGIPRKAFRGVTGVKNLQLDNN-HISCIEDGAFRALRDL 183

Query: 312 YHLNLKENAFTS-FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  +     S    P++RT+ +  N + C C++ WL + L +R T   F  C 
Sbjct: 184 EILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFTLCM 243

Query: 369 SP------------------------AP------LKYKSLISLSAEDLGCAGAGLTNISD 398
           +P                        AP      L   S  S S   + C G GLT I  
Sbjct: 244 APVHLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTEIPA 303

Query: 399 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
           N   G+  +R   L  N ++SIP     +  +L+ ++I +N  S +    F+GL  L  L
Sbjct: 304 NLPEGIVEIR---LEQNSIKSIPAGAFIQYKKLKRIDISKNQISDIAPDAFQGLKSLTSL 360

Query: 459 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 518
            + G + +T + KG F   ++L+ L LN N K+  +  +    L NL  L+L +N   + 
Sbjct: 361 VLYG-NKITEIPKGLFDGLVSLQLLLLNAN-KINCLRVNTFQDLQNLNLLSLYDNKLQTI 418

Query: 519 SESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISL 575
           S+ + A    ++T+ +A+NP  C C++ WL + L      TS   C+SP  L  K +  +
Sbjct: 419 SKGLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQI 478

Query: 576 SAEDL 580
            ++  
Sbjct: 479 KSKKF 483

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Rattus norvegicus (taxid: 10116)

>sp|Q9R1B9|SLIT2_MOUSE Slit homolog 2 protein OS=Mus musculus GN=Slit2 PE=2 SV=2

 Score =  126 bits (317), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 118/422 (27%), Positives = 192/422 (45%), Gaps = 42/422 (9%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL G  +T I+   F GL  LR L L +NR+ +I       L  LE L + +N   +  
Sbjct: 60  LDLNGNNITRITKIDFAGLRHLRVLQLMENRISTIERGAFQDLKELERLRLNRNNLQLFP 119

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F G + L RL+++  + +  + + AF   ++++ L L+ N ++  IE+GA   L +L
Sbjct: 120 ELLFLGTAKLYRLDLS-ENQIQAIPRKAFRGAVDIKNLQLDYN-QISCIEDGAFRALRDL 177

Query: 312 YHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  T  S  S    P+LRT  +  N + C C++ WL + L +R    ++  C 
Sbjct: 178 EVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCM 237

Query: 369 SPAPLK----------------YKSLISLSAEDLGCA-------------GAGLTNISDN 399
            P+ L+                ++S ++ S   L C              G GLT I  N
Sbjct: 238 GPSHLRGHNVAEVQKREFVCSGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPTN 297

Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
               ++ +R   L  N ++ IP    S   +L  L++  N  S L    F+GL  L  L 
Sbjct: 298 LPETITEIR---LEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELAPDAFQGLRSLNSLV 354

Query: 460 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519
           + G + +T + K  F    +L+ L LN N K+  +  DA   L NL  L+L +N   + +
Sbjct: 355 LYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTVA 412

Query: 520 ESML-AWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLS 576
           +    A   ++T+ +A+NP  C C++ WL + L      TS   C SP  L  K +  + 
Sbjct: 413 KGTFSALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIK 472

Query: 577 AE 578
           ++
Sbjct: 473 SK 474

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development, may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system, appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Mus musculus (taxid: 10090)

>sp|O75094|SLIT3_HUMAN Slit homolog 3 protein OS=Homo sapiens GN=SLIT3 PE=2 SV=3

 Score =  125 bits (315), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 126/500 (25%), Positives = 208/500 (41%), Gaps = 115/500 (23%)

Query: 116 PRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
           PR  E     +N I+RI +  F GL  LR+L+L+DNQ+  +   +F  L  L  LR+  N
Sbjct: 60  PRNAERLDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSVIERGAFQDLKQLERLRLNKN 119

Query: 174 VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
               L +  F    +L+ LDL                        ++N++Q IP K    
Sbjct: 120 KLQVLPELLFQSTPKLTRLDL------------------------SENQIQGIPRKAFRG 155

Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 293
           +T ++ L++  N  S +E G F+ L                          +LE LTLN 
Sbjct: 156 ITDVKNLQLDNNHISCIEDGAFRALR-------------------------DLEILTLNN 190

Query: 294 NPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWL 353
           N                    N+     TSF+      P++RT+ +  N + C C++ WL
Sbjct: 191 N--------------------NISRILVTSFNH----MPKIRTLRLHSNHLYCDCHLAWL 226

Query: 354 REMLVRRNTSAVF--CNSPAPLK------------------------------YKSLISL 381
            + L +R T   F  C +P  L+                                S  + 
Sbjct: 227 SDWLRQRRTVGQFTLCMAPVHLRGFNVADVQKKEYVCPAPHSEPPSCNANSISCPSPCTC 286

Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
           S   + C G GL  I  N   G+  +R   L  N +++IP    ++  +L+ ++I +N  
Sbjct: 287 SNNIVDCRGKGLMEIPANLPEGIVEIR---LEQNSIKAIPAGAFTQYKKLKRIDISKNQI 343

Query: 442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG 501
           S +    F+GL  L  L + G + +T + KG F   ++L+ L LN N K+  +  +    
Sbjct: 344 SDIAPDAFQGLKSLTSLVLYG-NKITEIVKGLFDGLVSLQLLLLNAN-KINCLRVNTFQD 401

Query: 502 LPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSA 558
           L NL  L+L +N   + S+ + A    ++T+ +A+NP  C C++ WL + L      TS 
Sbjct: 402 LQNLNLLSLYDNKLQTISKGLFAPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSG 461

Query: 559 VFCNSPAPLKYKSLISLSAE 578
             C+SP  L  K +  + ++
Sbjct: 462 ARCSSPRRLANKRISQIKSK 481

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Homo sapiens (taxid: 9606)

>sp|Q9WVB4|SLIT3_MOUSE Slit homolog 3 protein OS=Mus musculus GN=Slit3 PE=2 SV=2

 Score =  125 bits (314), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/425 (27%), Positives = 192/425 (45%), Gaps = 43/425 (10%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL    +T I+   F GL  LR L L DN++  I       L +LE L + +N   +L 
Sbjct: 66  LDLDRNNITRITKMDFAGLKNLRVLHLEDNQVSIIERGAFQDLKQLERLRLNKNKLQVLP 125

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F+    L RL+++  + +  + + AF     ++ L L+ N  +  IE+GA   L +L
Sbjct: 126 ELLFQSTPKLTRLDLS-ENQIQGIPRKAFRGVTGVKNLQLDNN-HISCIEDGAFRALRDL 183

Query: 312 YHLNLKENAFTS-FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  +     S    P++RT+ +  N + C C++ WL + L +R T   F  C 
Sbjct: 184 EILTLNNNNISRILVTSFNHMPKIRTLRLHSNHLYCDCHLAWLSDWLRQRRTIGQFTLCM 243

Query: 369 SP------------------------AP------LKYKSLISLSAEDLGCAGAGLTNISD 398
           +P                        AP      L   S  S S   + C G GLT I  
Sbjct: 244 APVHLRGFSVADVQKKEYVCPGPHSEAPACNANSLSCPSACSCSNNIVDCRGKGLTEIPA 303

Query: 399 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
           N   G+  +R   L  N ++SIP    ++  +L+ ++I +N  S +    F+GL  L  L
Sbjct: 304 NLPEGIVEIR---LEQNSIKSIPAGAFTQYKKLKRIDISKNQISDIAPDAFQGLKSLTSL 360

Query: 459 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 518
            + G + +T + KG F   ++L+ L LN N K+  +  +    L NL  L+L +N   + 
Sbjct: 361 VLYG-NKITEIPKGLFDGLVSLQLLLLNAN-KINCLRVNTFQDLQNLNLLSLYDNKLQTI 418

Query: 519 SESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISL 575
           S+ +      ++T+ +A+NP  C C++ WL + L      TS   C+SP  L  K +  +
Sbjct: 419 SKGLFVPLQSIQTLHLAQNPFVCDCHLKWLADYLQDNPIETSGARCSSPRRLANKRISQI 478

Query: 576 SAEDL 580
            ++  
Sbjct: 479 KSKKF 483

May act as molecular guidance cue in cellular migration, and function may be mediated by interaction with roundabout homolog receptors.

Mus musculus (taxid: 10090)

>sp|O94813|SLIT2_HUMAN Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1

 Score =  124 bits (312), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 115/422 (27%), Positives = 192/422 (45%), Gaps = 42/422 (9%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL G  +T I+   F GL  LR L L +N++ +I       L  LE L + +N   +  
Sbjct: 60  LDLNGNNITRITKTDFAGLRHLRVLQLMENKISTIERGAFQDLKELERLRLNRNHLQLFP 119

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
              F G + L RL+++  + +  + + AF   ++++ L L+ N ++  IE+GA   L +L
Sbjct: 120 ELLFLGTAKLYRLDLS-ENQIQAIPRKAFRGAVDIKNLQLDYN-QISCIEDGAFRALRDL 177

Query: 312 YHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF--CN 368
             L L  N  T  S  S    P+LRT  +  N + C C++ WL + L +R    ++  C 
Sbjct: 178 EVLTLNNNNITRLSVASFNHMPKLRTFRLHSNNLYCDCHLAWLSDWLRQRPRVGLYTQCM 237

Query: 369 SPAPLK----------------YKSLISLSAEDLGCA-------------GAGLTNISDN 399
            P+ L+                ++S ++ S   L C              G GLT I  N
Sbjct: 238 GPSHLRGHNVAEVQKREFVCSGHQSFMAPSCSVLHCPAACTCSNNIVDCRGKGLTEIPTN 297

Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
               ++ +R   L  N ++ IP    S   +L  +++  N  S L    F+GL  L  L 
Sbjct: 298 LPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLV 354

Query: 460 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS 519
           + G + +T + K  F    +L+ L LN N K+  +  DA   L NL  L+L +N   + +
Sbjct: 355 LYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA 412

Query: 520 ESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLS 576
           +   +    ++T+ +A+NP  C C++ WL + L      TS   C SP  L  K +  + 
Sbjct: 413 KGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIK 472

Query: 577 AE 578
           ++
Sbjct: 473 SK 474

Thought to act as molecular guidance cue in cellular migration, and function appears to be mediated by interaction with roundabout homolog receptors. During neural development involved in axonal navigation at the ventral midline of the neural tube and projection of axons to different regions. SLIT1 and SLIT2 seem to be essential for midline guidance in the forebrain by acting as repulsive signal preventing inappropriate midline crossing by axons projecting from the olfactory bulb. In spinal chord development may play a role in guiding commissural axons once they reached the floor plate by modulating the response to netrin. In vitro, silences the attractive effect of NTN1 but not its growth-stimulatory effect and silencing requires the formation of a ROBO1-DCC complex. May be implicated in spinal chord midline post-crossing axon repulsion. In vitro, only commissural axons that crossed the midline responded to SLIT2. In the developing visual system appears to function as repellent for retinal ganglion axons by providing a repulsion that directs these axons along their appropriate paths prior to, and after passage through, the optic chiasm. In vitro, collapses and repels retinal ganglion cell growth cones. Seems to play a role in branching and arborization of CNS sensory axons, and in neuronal cell migration. In vitro, Slit homolog 2 protein N-product, but not Slit homolog 2 protein C-product, repels olfactory bulb (OB) but not dorsal root ganglia (DRG) axons, induces OB growth cones collapse and induces branching of DRG axons. Seems to be involved in regulating leukocyte migration.

Homo sapiens (taxid: 9606)

>sp|A0N0X6|LRRN1_BOVIN Leucine-rich repeat neuronal protein 1 OS=Bos taurus GN=LRRN1 PE=3 SV=1

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 150/328 (45%), Gaps = 6/328 (1%)

Query: 29  CNLQEANLDVIPSHSNPSIQRLVLSTNRI-KTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
           CN  +  L  IPS+ +   Q L+L +N I KTVD    ++ +L  +D S   +  I   G
Sbjct: 58  CN--DLRLTRIPSNLSSDTQVLLLQSNNIAKTVDELQQLF-NLTELDFSQNNFTNIKEVG 114

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-GQNRISRIDQACFEGLTALRILYL 146
                +L  L L  N+       C        E++   N+IS I    F GL  L  L+L
Sbjct: 115 LANLTQLTTLHLEENQITEMNDYCLQDLSNLQELYINHNQISTISANAFSGLKNLLRLHL 174

Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
           + N+L+ + +  F     L  L +G N    + D  F  L  L +L L G  LT+I  NA
Sbjct: 175 NSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMNFKPLSNLRSLVLAGMYLTDIPGNA 234

Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
             GL  L SL   DN+L  +P   L K+  L+ L++ +N    ++ G FK +  LK L I
Sbjct: 235 LVGLDSLESLSFYDNKLVKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294

Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS-FS 325
                L  V + A  +   L  L    NPKL  I   A   +P L  L L  NA  + + 
Sbjct: 295 NNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQ 354

Query: 326 ESMLAWPELRTIDIAENPIECGCNILWL 353
           +++ + P LR I I  NP+ C C I W+
Sbjct: 355 KTVESLPNLREISIHSNPLRCDCVIHWI 382

Bos taurus (taxid: 9913)

>sp|Q6UXK5|LRRN1_HUMAN Leucine-rich repeat neuronal protein 1 OS=Homo sapiens GN=LRRN1 PE=1 SV=1

 Score =  124 bits (312), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/328 (31%), Positives = 150/328 (45%), Gaps = 6/328 (1%)

Query: 29  CNLQEANLDVIPSHSNPSIQRLVLSTNRI-KTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
           CN  +  L  IPS+ +   Q L+L +N I KTVD    ++ +L  +D S   +  I   G
Sbjct: 58  CN--DLRLTRIPSNLSSDTQVLLLQSNNIAKTVDELQQLF-NLTELDFSQNNFTNIKEVG 114

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-GQNRISRIDQACFEGLTALRILYL 146
                +L  L L  N+       C        E++   N+IS I    F GL  L  L+L
Sbjct: 115 LANLTQLTTLHLEENQITEMTDYCLQDLSNLQELYINHNQISTISAHAFAGLKNLLRLHL 174

Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
           + N+L+ + +  F     L  L +G N    + D  F  L  L +L L G  LT+I  NA
Sbjct: 175 NSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMNFKPLANLRSLVLAGMYLTDIPGNA 234

Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
             GL  L SL   DN+L  +P   L K+  L+ L++ +N    ++ G FK +  LK L I
Sbjct: 235 LVGLDSLESLSFYDNKLVKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294

Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS-FS 325
                L  V + A  +   L  L    NPKL  I   A   +P L  L L  NA  + + 
Sbjct: 295 NNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAIYQ 354

Query: 326 ESMLAWPELRTIDIAENPIECGCNILWL 353
           +++ + P LR I I  NP+ C C I W+
Sbjct: 355 KTVESLPNLREISIHSNPLRCDCVIHWI 382

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
328696893	628	PREDICTED: insulin-like growth factor-bi	0.643	0.595	0.531	1e-112
242007469	544	tartan protein, putative [Pediculus huma	0.619	0.661	0.547	1e-110
270007914	536	hypothetical protein TcasGA2_TC014658 [T	0.605	0.656	0.545	1e-105
91083775	586	PREDICTED: similar to leucine-rich repea	0.605	0.600	0.545	1e-105
307207257	786	Leucine-rich repeats and immunoglobulin-	0.612	0.452	0.513	6e-99
322799077	556	hypothetical protein SINV_04557 [Solenop	0.612	0.640	0.510	1e-98
345493135	568	PREDICTED: insulin-like growth factor-bi	0.612	0.626	0.505	8e-97
332017189	760	Leucine-rich repeat neuronal protein 2 [	0.612	0.468	0.502	9e-97
340710155	850	PREDICTED: hypothetical protein LOC10064	0.611	0.417	0.493	1e-96
110750681	755	PREDICTED: slit homolog 1 protein-like [	0.611	0.470	0.490	2e-96

>gi|328696893|ref|XP_003240168.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Acyrthosiphon pisum]

 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/410 (53%), Positives = 280/410 (68%), Gaps = 36/410 (8%)

Query: 9   LRSKCMNPYEPSRFSTRDPSCNL--QEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI 66
           +R+ C     PS  S  D +  +  +E NLDVIP   NPSIQRL+L  NRIK VD++   
Sbjct: 22  IRAHC-----PSNCSCDDDTLVVLCKEGNLDVIPITLNPSIQRLMLMYNRIKIVDASFQF 76

Query: 67  YLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK----------------------- 103
           Y +LQ+VD+SH   + IP  GFE QEKLVEL LNHNK                       
Sbjct: 77  YGALQYVDISHNHLVNIPNKGFEAQEKLVELHLNHNKISSINNKTFIGLASLTILNLRGN 136

Query: 104 ---HFPQQIVCSIISPRRVEI-FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
                P ++  ++  P+  E+  G NRI+RID A F+GLT LR+LYLDDNQLR++PTP+F
Sbjct: 137 YLEDLPDRLFAAL--PKLEELDLGANRITRIDPASFQGLTRLRVLYLDDNQLRAIPTPAF 194

Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLT 219
            +LG LAE+R+GLN FTTL D  F GLGRLS L+L GA L NIS NAF+GL+ LR LVLT
Sbjct: 195 KFLGNLAEMRIGLNAFTTLDDDCFAGLGRLSVLELTGAALINISTNAFKGLTVLRRLVLT 254

Query: 220 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 279
           DNRL +IPTKQLS L RLE+L +GQN F  +E   FKGL+ L+ ++++GAS L+ ++KG 
Sbjct: 255 DNRLSAIPTKQLSDLNRLEDLCVGQNDFVTIEPNAFKGLANLRSIDVSGASQLSVIKKGV 314

Query: 280 FADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDI 339
           F DNLNLET+  + N +L TIE GA +GLPNL +L ++ NAFTSF+E+M+ W EL+ ID+
Sbjct: 315 FNDNLNLETINFSSNKQLATIENGAFMGLPNLRNLIMRNNAFTSFAEAMVTWQELQQIDL 374

Query: 340 AENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
            ENP+ C C++LWL+E+L RRNTS V C SPAPLK K L SL ++DL CA
Sbjct: 375 TENPLVCECSVLWLKELLARRNTSHVNCASPAPLKDKPLNSLGSDDLSCA 424

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007469|ref|XP_002424562.1| tartan protein, putative [Pediculus humanus corporis] gi|212508005|gb|EEB11824.1| tartan protein, putative [Pediculus humanus corporis]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 212/387 (54%), Positives = 275/387 (71%), Gaps = 27/387 (6%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
           SC  +EANLDVIP   NPSIQRLVL  NRIKTVD+A   Y  LQ+VDL++   + IP+  
Sbjct: 77  SC--KEANLDVIPITLNPSIQRLVLKNNRIKTVDAAFQFYGELQYVDLAYNHLVSIPMKS 134

Query: 88  FEPQEKLVELQLNHNK----------------------HFPQQIVCSIIS--PRRVEI-F 122
           FE Q+KL EL LNHNK                      +F +++  ++ S  P   E+  
Sbjct: 135 FEAQKKLFELHLNHNKISSINNQTFVGLKNLGVLSLRENFLEELSSNLFSSLPSLQELDL 194

Query: 123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
           G N IS +D + F GL++L+ILYLDDNQLRS+PT SF  LG LAEL +GLN FT+L+DGA
Sbjct: 195 GVNSISVVDPSAFSGLSSLKILYLDDNQLRSIPTGSFSLLGNLAELHIGLNAFTSLSDGA 254

Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
           F GL +L  LDL  AGL NIS+ AF+ L+GLRSL L DNRL SIPT+QL  +TRLEEL +
Sbjct: 255 FTGLTKLYKLDLVSAGLVNISEGAFKKLTGLRSLGLADNRLGSIPTRQLKMMTRLEELSL 314

Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
           GQN F +LE+  F GLS L+RL+I+GA +L +V K AF DNLNLETL L+ N +L  IEE
Sbjct: 315 GQNEFRILESNAFLGLSNLRRLDISGAPHLEKVEKDAFRDNLNLETLVLSSNKRLSQIEE 374

Query: 303 GALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362
           GAL GLPNL +L L++NAF+SFSES+++W EL  IDIAENPIEC C++LWL+E+L+++N 
Sbjct: 375 GALAGLPNLKNLVLRDNAFSSFSESLVSWLELHEIDIAENPIECRCSLLWLKELLIKKNI 434

Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCA 389
           S + C SP+ LK + L +L+++D+GC+
Sbjct: 435 SQILCASPSHLKDRRLSTLTSDDMGCS 461

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007914|gb|EFA04362.1| hypothetical protein TcasGA2_TC014658 [Tribolium castaneum]

 Score =  389 bits (999), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/381 (54%), Positives = 261/381 (68%), Gaps = 29/381 (7%)

Query: 36  LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV 95
           LDV+P   NP+IQRLVL  N+IKTVD+A   Y  LQ+VDLS+   + IP   F  QEKL 
Sbjct: 76  LDVLPITLNPAIQRLVLRNNKIKTVDAAFQFYKDLQYVDLSNNHLVNIPTKSFIYQEKLQ 135

Query: 96  ELQLNHNK--------------------------HFPQQIVCSIISPRRVEI-FGQNRIS 128
           EL LN NK                            PQ +    I P+  E+  GQNRIS
Sbjct: 136 ELHLNKNKLSSINNKTFQGLKSLTVLNLRENFLEELPQGLFS--IMPKLEELNLGQNRIS 193

Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
           +ID   F+GLTALR+LYLDDN L SVPT SF  LG LAEL VGLN F++L D AF GLG+
Sbjct: 194 KIDPLAFDGLTALRVLYLDDNALSSVPTSSFSVLGSLAELHVGLNAFSSLPDDAFKGLGK 253

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           LS LDL  AGL+N+S+NAFRGL+GLRSL L DN+LQ IPT QLS L+RLEEL IGQN F+
Sbjct: 254 LSVLDLSSAGLSNMSNNAFRGLTGLRSLNLVDNKLQRIPTAQLSHLSRLEELSIGQNEFT 313

Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
            +E   FKGLS L++L+ITGA NL +V KGAF+DNLNLE + L  N KL+ +EEGALVGL
Sbjct: 314 TVEKNSFKGLSNLRKLDITGAPNLQKVEKGAFSDNLNLEFIVLASNKKLEELEEGALVGL 373

Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
           PNL HL LK+N+F + SESM++W ELR++++ +NPI C C++LWL  ++  +N S V C+
Sbjct: 374 PNLKHLVLKDNSFKALSESMVSWNELRSLEMTDNPIVCDCHLLWLSNLISMKNLSNVQCS 433

Query: 369 SPAPLKYKSLISLSAEDLGCA 389
            P  L+ + L +LS +DLGC+
Sbjct: 434 MPLALRERPLRTLSPDDLGCS 454

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083775|ref|XP_972275.1| PREDICTED: similar to leucine-rich repeat-containing protein 4B [Tribolium castaneum]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 208/381 (54%), Positives = 261/381 (68%), Gaps = 29/381 (7%)

Query: 36  LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV 95
           LDV+P   NP+IQRLVL  N+IKTVD+A   Y  LQ+VDLS+   + IP   F  QEKL 
Sbjct: 76  LDVLPITLNPAIQRLVLRNNKIKTVDAAFQFYKDLQYVDLSNNHLVNIPTKSFIYQEKLQ 135

Query: 96  ELQLNHNK--------------------------HFPQQIVCSIISPRRVEI-FGQNRIS 128
           EL LN NK                            PQ +    I P+  E+  GQNRIS
Sbjct: 136 ELHLNKNKLSSINNKTFQGLKSLTVLNLRENFLEELPQGLFS--IMPKLEELNLGQNRIS 193

Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
           +ID   F+GLTALR+LYLDDN L SVPT SF  LG LAEL VGLN F++L D AF GLG+
Sbjct: 194 KIDPLAFDGLTALRVLYLDDNALSSVPTSSFSVLGSLAELHVGLNAFSSLPDDAFKGLGK 253

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           LS LDL  AGL+N+S+NAFRGL+GLRSL L DN+LQ IPT QLS L+RLEEL IGQN F+
Sbjct: 254 LSVLDLSSAGLSNMSNNAFRGLTGLRSLNLVDNKLQRIPTAQLSHLSRLEELSIGQNEFT 313

Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
            +E   FKGLS L++L+ITGA NL +V KGAF+DNLNLE + L  N KL+ +EEGALVGL
Sbjct: 314 TVEKNSFKGLSNLRKLDITGAPNLQKVEKGAFSDNLNLEFIVLASNKKLEELEEGALVGL 373

Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
           PNL HL LK+N+F + SESM++W ELR++++ +NPI C C++LWL  ++  +N S V C+
Sbjct: 374 PNLKHLVLKDNSFKALSESMVSWNELRSLEMTDNPIVCDCHLLWLSNLISMKNLSNVQCS 433

Query: 369 SPAPLKYKSLISLSAEDLGCA 389
            P  L+ + L +LS +DLGC+
Sbjct: 434 MPLALRERPLRTLSPDDLGCS 454

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207257|gb|EFN85034.1| Leucine-rich repeats and immunoglobulin-like domains protein 3 [Harpegnathos saltator]

 Score =  368 bits (944), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 196/382 (51%), Positives = 257/382 (67%), Gaps = 26/382 (6%)

Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQE 92
           ANLDVIP   NPSIQR+VL  NRIK VD+A    Y  L++VDLS      IP G F+ Q 
Sbjct: 52  ANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQR 111

Query: 93  KLVELQLNHNK-------HFPQQIVCSIISPR-------RVEIF-----------GQNRI 127
            LVEL L HNK        F      ++++ R       +  +F           GQNRI
Sbjct: 112 HLVELHLKHNKISALTEKTFQGLKSLTVLNLRDNYLETLKSGLFAYLSKLEELDLGQNRI 171

Query: 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187
           S+++   F+ L  LR+LYLDDNQLR++P+P+   L  LAEL +G N F+TL D AF GL 
Sbjct: 172 SKVEPGAFQKLGTLRVLYLDDNQLRTIPSPALAPLNALAELHIGWNAFSTLPDDAFKGLE 231

Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           +L+ LD+ GAGL NISD AFRGL+ LR+L L  N+L+ +PTKQL+ L RLEEL +GQN F
Sbjct: 232 QLAVLDIMGAGLDNISDGAFRGLNALRTLKLGANKLREVPTKQLAVLPRLEELTLGQNFF 291

Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
           ++L +G F+GLS LK+L+++GA  LT V KGAF+DN NLETL LN N +L T+E+GAL G
Sbjct: 292 TILRSGAFQGLSTLKKLDVSGAKLLTTVEKGAFSDNANLETLVLNSNKRLVTMEDGALAG 351

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC 367
           LPNL HL L++NAF  FSES++AW ELR +D++ENP+ C C++LWL E+LV RN+S V C
Sbjct: 352 LPNLRHLMLRDNAFVMFSESLVAWNELRRLDLSENPLLCDCSLLWLAEVLVPRNSSPVIC 411

Query: 368 NSPAPLKYKSLISLSAEDLGCA 389
             PA  K K +  ++ ++LGCA
Sbjct: 412 AEPAESKGKPIKGMTPDELGCA 433

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799077|gb|EFZ20530.1| hypothetical protein SINV_04557 [Solenopsis invicta]

 Score =  367 bits (942), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 195/382 (51%), Positives = 255/382 (66%), Gaps = 26/382 (6%)

Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQE 92
           ANLDVIP   NPSIQR+VL  NRIK VD+A    Y  L++VDLS      IP G F+ Q 
Sbjct: 50  ANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQR 109

Query: 93  KLVELQLNHNK-------HFPQQIVCSIISPRRVEI------------------FGQNRI 127
            LVEL L HNK        F      ++++ R   +                   GQNRI
Sbjct: 110 HLVELHLKHNKISALTEKTFQGLKSLTVLNLRDNYLEMLKNGLFAYLSKLEELDLGQNRI 169

Query: 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187
           S+++   F+ L  LR+LYLDDNQLR++P+P+   L  LAEL +G N F++L D AF GL 
Sbjct: 170 SKVEPGAFQKLGTLRVLYLDDNQLRTIPSPALAPLNALAELHIGWNAFSSLPDDAFKGLE 229

Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           +L+ LD+ GAGL NISD AFRGL+ LR+L L  N+L+ +PTKQL+ L RLEEL +GQN F
Sbjct: 230 QLAVLDIMGAGLDNISDGAFRGLNALRTLKLGANKLREVPTKQLAVLPRLEELTLGQNFF 289

Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
           ++L +G F+GLS LK+L+++GA  LT V KGAF+DN NLETL LN N +L T+E+G+L G
Sbjct: 290 TILRSGAFQGLSTLKKLDVSGAKLLTTVEKGAFSDNANLETLVLNSNKRLATMEDGSLAG 349

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC 367
           LPNL HL L++NAF +FSES++AW ELR +D++ENPI C C+ LWL E+LV RN+S V C
Sbjct: 350 LPNLRHLMLRDNAFVTFSESLVAWNELRRLDLSENPIVCDCSQLWLAEILVPRNSSPVIC 409

Query: 368 NSPAPLKYKSLISLSAEDLGCA 389
             P   K K +  +SA++LGCA
Sbjct: 410 AEPPESKGKPIKGMSADELGCA 431

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493135|ref|XP_003427009.1| PREDICTED: insulin-like growth factor-binding protein complex acid labile subunit-like [Nasonia vitripennis]

 Score =  360 bits (925), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 193/382 (50%), Positives = 254/382 (66%), Gaps = 26/382 (6%)

Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQE 92
           A LDVIP   NPSIQR+VL  N+IK VD+A    Y  L++VDLS      IP   FE Q+
Sbjct: 57  AKLDVIPIALNPSIQRIVLRDNQIKIVDAAAFQFYGDLRNVDLSFNHLFTIPDNSFEAQK 116

Query: 93  KLVELQLNHNK-------HFPQQIVCSIISPRRVEI------------------FGQNRI 127
           +LVEL L HNK        F      ++++ R   +                   GQNRI
Sbjct: 117 QLVELHLKHNKISALTEKTFTGLKSLTVLNLRNNYLEALTNGLFTSLDKLEELDLGQNRI 176

Query: 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187
           S ++   F+ L +LR+LYLDDNQL+S+P+P+   L  LAEL VGLN F++L D AF GL 
Sbjct: 177 SSVEPGAFQKLGSLRVLYLDDNQLQSIPSPALAPLNALAELHVGLNAFSSLPDDAFRGLE 236

Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           RL+ LD+  AGL NISD AFRGL+ L+SL L  N+L+ +PTKQLS L RLEEL +GQN F
Sbjct: 237 RLAVLDVAAAGLDNISDEAFRGLNALKSLKLNANKLREVPTKQLSTLPRLEELTLGQNFF 296

Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
           + L +G FKGLS LK+LE++GA+ LT V++GAF+DN NLE L LN N +L ++E+GAL G
Sbjct: 297 TSLRSGAFKGLSNLKKLEVSGATLLTTVKRGAFSDNGNLEILVLNSNKRLSSLEDGALAG 356

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC 367
           LPNL HL L++N F SFSES++AW ELR +D++ENP+ C C++LWL ++L  RN+S V C
Sbjct: 357 LPNLRHLMLRDNNFASFSESLVAWNELRRLDLSENPLVCDCSVLWLADVLAPRNSSPVIC 416

Query: 368 NSPAPLKYKSLISLSAEDLGCA 389
             P  L+ KSL  +  ++LGCA
Sbjct: 417 AEPRDLQGKSLKGMRPDELGCA 438

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017189|gb|EGI57982.1| Leucine-rich repeat neuronal protein 2 [Acromyrmex echinatior]

 Score =  360 bits (925), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 192/382 (50%), Positives = 252/382 (65%), Gaps = 26/382 (6%)

Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQE 92
           ANLDVIP   NPSIQR+VL  NRIK VD+A    Y  L++VDLS      IP G F+ Q 
Sbjct: 52  ANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQR 111

Query: 93  KLVELQLNHNK-------HFPQQIVCSIISPRRVEI------------------FGQNRI 127
            LVEL L HNK        F      ++++ R   +                   GQNRI
Sbjct: 112 HLVELHLKHNKISALTEKTFQGLKSLTVLNLRDNYLETLNNGLFAYLSKLEELDLGQNRI 171

Query: 128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187
           S+++   F+ L  LR+LYLDDNQLR+VP+ +   L  LAEL +G N F++L D AF GL 
Sbjct: 172 SKVEPGAFQKLGTLRVLYLDDNQLRTVPSSALAPLNALAELHIGWNAFSSLPDDAFKGLE 231

Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           +L+ LD+ GAGL NISD AFRGL+ LR+L L  N+L+ +PTKQL+ L RLEEL +GQN F
Sbjct: 232 QLAVLDIMGAGLDNISDGAFRGLNALRTLKLGGNKLREVPTKQLAVLPRLEELTLGQNFF 291

Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
           ++L +G F+GLS LK+L+++GA   T V KGAF+DN NLETL LN N +L  +EEG+L G
Sbjct: 292 TILRSGAFQGLSTLKKLDVSGAKLFTTVEKGAFSDNANLETLVLNSNKRLAVMEEGSLAG 351

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC 367
           LPNL HL L++NAF +FSES++AW ELR +D++ENP+ C C+ LWL E+LV RN+S V C
Sbjct: 352 LPNLRHLMLRDNAFITFSESLVAWNELRRLDLSENPLVCDCSQLWLAEILVPRNSSPVIC 411

Query: 368 NSPAPLKYKSLISLSAEDLGCA 389
             P   K K +  ++A++LGCA
Sbjct: 412 AEPPESKSKPIKGMTADELGCA 433

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710155|ref|XP_003393661.1| PREDICTED: hypothetical protein LOC100643966 [Bombus terrestris]

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 189/383 (49%), Positives = 254/383 (66%), Gaps = 28/383 (7%)

Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQE 92
           ANLDVIP   NPSIQR+VL  NRIK VD+A    Y  L++VDLS      IP G F+ Q+
Sbjct: 152 ANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQK 211

Query: 93  KLVELQLNHNK--------------------------HFPQQIVCSIISPRRVEIFGQNR 126
           +LVEL L HNK                               +  S+     +++ G+NR
Sbjct: 212 QLVELHLRHNKISALTEKTFQGLKSLTVLNLRDNYLESLKNGLFASLSKLEELDL-GKNR 270

Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
           IS+++   F+ L  LR+L+LDDNQLR++P+P+   L  LAEL +G N F++L D AF GL
Sbjct: 271 ISKVEPGAFQKLGTLRVLHLDDNQLRTIPSPALAPLNALAELHIGWNAFSSLPDDAFKGL 330

Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
            +L+ LD+ GAGL NISD AFRGL+ LR+L L  N+L+ +PTKQL+ L RLEEL +GQN 
Sbjct: 331 EQLTVLDITGAGLDNISDGAFRGLNALRTLELDGNKLREVPTKQLAVLPRLEELTLGQNF 390

Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALV 306
           F+ L +G F+GLS LK+L+I+ A  LT V +GAF+DN NLETL LN N +L T+E+G+L 
Sbjct: 391 FTTLRSGAFQGLSKLKKLDISAAKLLTTVERGAFSDNANLETLVLNSNKRLTTMEDGSLA 450

Query: 307 GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 366
           GLPNL HL L++NAFT FSES++AW ELR +D++ENP+ C C++LWL E+LV RN+S V 
Sbjct: 451 GLPNLRHLMLRDNAFTGFSESLVAWNELRRLDLSENPLVCDCSLLWLAEVLVPRNSSPVL 510

Query: 367 CNSPAPLKYKSLISLSAEDLGCA 389
           C  P   K K +  ++ ++LGCA
Sbjct: 511 CAEPPESKGKPIKGMTPDELGCA 533

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110750681|ref|XP_396683.3| PREDICTED: slit homolog 1 protein-like [Apis mellifera]

 Score =  359 bits (922), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 188/383 (49%), Positives = 258/383 (67%), Gaps = 28/383 (7%)

Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQE 92
           ANLDVIP   NPSIQR+VL  NRIK VD+A    Y  L++VDLS      IP G F+ Q+
Sbjct: 58  ANLDVIPIALNPSIQRIVLKENRIKIVDAAAFQFYGDLKNVDLSSNHLFTIPNGSFDAQK 117

Query: 93  KLVELQLNHNK--------------------------HFPQQIVCSIISPRRVEIFGQNR 126
           +LVEL L HNK                          +    +  S+     +++ G+NR
Sbjct: 118 QLVELHLRHNKISALTEKTFQGLKSLTVLNLRDNYLENLKNGLFASLSKLEELDL-GKNR 176

Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
           IS+++   F+ L  LR+L+LDDNQL+++P+P+   L  LAEL +G N F++L D AF GL
Sbjct: 177 ISKVELGAFQKLGTLRVLHLDDNQLKTIPSPALAPLNALAELHIGWNAFSSLPDDAFRGL 236

Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
            +L+ LD+ GAGL NISD+AFRGL+ LR+L L  N+L+ +PT+QL+ L RLEEL +GQN 
Sbjct: 237 EQLTVLDITGAGLDNISDSAFRGLNALRTLELDGNKLREVPTRQLAVLPRLEELTLGQNF 296

Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALV 306
           F++L +G F+GLS LK+L+I+ A  LT V +GAF+DN NLETL LN N +L T+E+G+L 
Sbjct: 297 FTILRSGAFQGLSKLKKLDISAAKLLTTVERGAFSDNANLETLVLNSNKRLTTMEDGSLA 356

Query: 307 GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 366
           GLPNL HL L++NAFT FSES++AW ELR +D++ENP+ C C++LWL E+LV RN+S V 
Sbjct: 357 GLPNLKHLMLRDNAFTGFSESLVAWNELRRLDLSENPLVCDCSLLWLSEILVPRNSSPVL 416

Query: 367 CNSPAPLKYKSLISLSAEDLGCA 389
           C  PA  K K +  ++ ++LGCA
Sbjct: 417 CLEPAESKGKPIKGMTPDELGCA 439

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	581
FB|FBgn0010452	737	trn "tartan" [Drosophila melan	0.586	0.462	0.396	4.6e-57
FB|FBgn0023095	748	caps "capricious" [Drosophila	0.585	0.454	0.411	4.2e-56
FB|FBgn0085397	738	Fili "Fish-lips" [Drosophila m	0.545	0.429	0.285	2.4e-27
ZFIN|ZDB-GENE-071126-1	717	lrrn1 "leucine rich repeat neu	0.633	0.513	0.279	8.8e-26
UNIPROTKB|A0N0X6	716	LRRN1 "Leucine-rich repeat neu	0.685	0.555	0.277	2.5e-25
UNIPROTKB|Q6UXK5	716	LRRN1 "Leucine-rich repeat neu	0.681	0.553	0.278	4.2e-25
UNIPROTKB|Q9H3W5	708	LRRN3 "Leucine-rich repeat neu	0.617	0.507	0.267	1.1e-24
RGD|69310	766	Slit2 "slit homolog 2 (Drosoph	0.580	0.439	0.243	1.7e-24
RGD|1564145	716	Lrrn1 "leucine rich repeat neu	0.609	0.494	0.280	2e-24
MGI|MGI:106038	716	Lrrn1 "leucine rich repeat pro	0.609	0.494	0.278	2.5e-24

FB|FBgn0010452 trn "tartan" [Drosophila melanogaster (taxid:7227)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 139/351 (39%), Positives = 192/351 (54%)

Query:    50 LVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK--HFP 106
             L LS+N + T+      Y   LQ V L+H     I    F     +  L L  N+     
Sbjct:    87 LDLSSNHLMTIPQRTFAYQKKLQEVHLNHNKIGQISNKTFIGLSAVTVLNLRGNQISELH 146

Query:   107 QQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS-FIYLGML 165
             Q     ++    + + G+NRI  +D   F+GL+ LRILYLDDN L +VP P  F  +  L
Sbjct:   147 QGTFTPLLKIEELNL-GENRIGYLDPKAFDGLSQLRILYLDDNALTTVPDPVIFQAMPSL 205

Query:   166 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225
             AEL +G+N   ++   AF  L  L+ L+L+GA L NIS ++F GL  LR L L+DNRL  
Sbjct:   206 AELFLGMNTLQSIQADAFQDLKGLTRLELKGASLRNISHDSFLGLQELRILDLSDNRLDR 265

Query:   226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXX 285
             IP+  LSKL RLE+L +GQN F ++  G F GL  LKRLE+ GA  L RV  GAF+D   
Sbjct:   266 IPSVGLSKLVRLEQLSLGQNDFEVISEGAFMGLKQLKRLEVNGALRLKRVMTGAFSDNGN 325

Query:   286 XXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
                           ++EGAL GL  L H+ LK NA TS +E +  W +L+T+D++ENP+ 
Sbjct:   326 LEYLNLSSNKMLLEVQEGALSGLSQLKHVVLKANALTSLAEGLFPWKDLQTLDLSENPLS 385

Query:   346 CGCNILWLREMLVRRNTSA-----VFCNSPAPLKYKSLISLSAEDLGCAGA 391
             C C ++WL  +LV +N S      + C  P  L+ +SL  L+   +GC  A
Sbjct:   386 CDCRVMWLHNLLVAKNASQDDVSELLCEFPERLRGESLRHLNPAMMGCTHA 436

GO:0005886 "plasma membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016477 "cell migration" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

FB|FBgn0023095 caps "capricious" [Drosophila melanogaster (taxid:7227)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 145/352 (41%), Positives = 191/352 (54%)

Query:    50 LVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQ 108
             L LS N + T+ + +   +  LQ + L H     +    F     +  L L  N     +
Sbjct:   100 LDLSFNDMLTIPERSFAYHAKLQELHLDHNKIGQVSNKTFLGLSTISVLNLRGN--LIAE 157

Query:   109 IVCSIISP--RRVEI-FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP-SFIYLGM 164
             +     SP  +  E+  GQNRIS ID    +GL  LR+LYLDDN L +VP   +F  L  
Sbjct:   158 LEYRTFSPMVKLAELNLGQNRISHIDPHALDGLDNLRVLYLDDNTLTTVPGELTFQALHS 217

Query:   165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
             LAEL +G N F T+  GAF  L  L+ LDLRGAGL NIS +A +GL  LR L L+DNRL 
Sbjct:   218 LAELYLGTNSFMTIPGGAFQDLKGLTRLDLRGAGLHNISGDALKGLVSLRFLDLSDNRLP 277

Query:   225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 284
             +IPT    +L RLE+L IGQN F ++ +G F GL  L+ LE+TGA  L RV  GAF+   
Sbjct:   278 AIPTAAFQRLGRLEQLNIGQNDFEVISSGAFSGLRELRHLELTGAQRLRRVESGAFSGNT 337

Query:   285 XXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
                            +   AL GLP+L  + LK N  +S  E ++ W +L+T+D++ENP 
Sbjct:   338 NLEHLNLSSNKQLNELSSIALGGLPHLSTVVLKANQLSSLDEGLVPWADLQTLDLSENPF 397

Query:   345 ECGCNILWLREMLVRRNTSA----VFCNSPAPLKYKSLISLSAEDLGCA-GA 391
             EC C +LWLR +LV RN S     V C  P  L+   L  L+   LGCA GA
Sbjct:   398 ECDCRLLWLRHLLVSRNASGQYAPVICAYPTALRDLPLAHLAEPLLGCAHGA 449

GO:0007411 "axon guidance" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP

GO:0016020 "membrane" evidence=NAS

GO:0007155 "cell adhesion" evidence=NAS

GO:0016477 "cell migration" evidence=TAS

GO:0072499 "photoreceptor cell axon guidance" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0008045 "motor neuron axon guidance" evidence=IMP

GO:0042995 "cell projection" evidence=IDA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0085397 Fili "Fish-lips" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 2.4e-27, P = 2.4e-27
 Identities = 92/322 (28%), Positives = 157/322 (48%)

Query:    47 IQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK-- 103
             ++ L LS N I+T+ S    Y S L+ ++LS      +    F+    L+ L L+ N+  
Sbjct:    98 LEILDLSQNIIETLGSKNFEYQSELRTLNLSRNLVSSLHKHAFKGLTNLLLLDLSFNRIE 157

Query:   104 HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLG 163
                   +  + S   +++   N +S ++  CF+G+  L +L   +N+L  VP  +  +L 
Sbjct:   158 TVHPTALSDLASLVELDLTNNNIVS-LEDNCFKGMNTLEVLVFRNNRLLDVPASNLWHLH 216

Query:   164 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL 223
              L  L + LN+   + + +F GL  L AL ++G  ++ +  +AF GL  L+ L L+DN L
Sbjct:   217 ALKSLDMSLNLVEFVRNDSFEGLKELLALSVQGNVMSELDLSAFEGLISLKHLDLSDNNL 276

Query:   224 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADX 283
               +PT+QLSKL+ L  L +G N FS L A  F  L +L+ L ++    L R+   AF D 
Sbjct:   277 TMVPTQQLSKLSNLTYLNLGGNRFSQLPAVAFLNLFHLRELHLSRLDFLQRIDSRAFVDN 336

Query:   284 XXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 343
                             I      G PN+  + ++ N+  +   +     +L+ + + +NP
Sbjct:   337 THLQTLHLNNNPQLSDIPMRLFQGNPNILEVYMQSNSLQTLYSAQFPVDQLQKLYLGDNP 396

Query:   344 IECGCNILWLREMLVRRNTSAV 365
             ++C C++LWL   LV  N   V
Sbjct:   397 LQCNCSLLWLWR-LVTGNFEGV 417

GO:0003674 "molecular_function" evidence=ND

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0016021 "integral to membrane" evidence=ISM

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-071126-1 lrrn1 "leucine rich repeat neuronal 1" [Danio rerio (taxid:7955)]

 Score = 320 (117.7 bits), Expect = 8.8e-26, P = 8.8e-26
 Identities = 106/379 (27%), Positives = 166/379 (43%)

Query:    29 CNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
             CN  + +L  IP + +   Q L+L +N I      +   L+L  +DLS   +  I   G 
Sbjct:    59 CN--DLHLTRIPGNLSADTQVLLLQSNYIARTSEELEQLLNLTELDLSQNNFSNIRDIGL 116

Query:    89 EPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYL 146
                 +L  L L  N+    P   +  + + + + I   N+IS I    F GL  L  L+L
Sbjct:   117 TNMSQLTTLHLEENQIVEMPDFSLQDLTNLQELYI-NHNQISSIAPNAFAGLRNLLRLHL 175

Query:   147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             + N+L+++ +  F     L  L +G N    + D  F  L  L +L L G  LT+I  NA
Sbjct:   176 NSNRLKAIDSRWFESTPNLEILMIGENPVVGILDLNFKPLTNLRSLVLAGMELTDIPGNA 235

Query:   207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
             F GL  L SL   DN+L  +P   L KL  L+ L++ +N    ++ G FK +  LK L I
Sbjct:   236 FVGLDNLESLSFYDNKLVRVPQTALQKLPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 295

Query:   267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE 326
                  L  + + A  +                 +   A   LP L  L L  NA  S  +
Sbjct:   296 NNMGELVSIDRFALDNLPELTKLEATNNPKFSYVSRLAFRDLPALESLMLNNNALNSLYQ 355

Query:   327 SML-AWPELRTIDIAENPIECGCNILWL--REMLVR-RNTSAVFCNSPAPLKYKSLISLS 382
             +   + P LR I I  NP+ C C I W+   +  +R     ++FC  P  ++ + +  + 
Sbjct:   356 ATADSLPNLREISIHSNPLRCDCVIQWMSSNKTTIRFMEPLSMFCTMPIEVRGQRVRDVF 415

Query:   383 AEDLGCAGAGLTNISDNAF 401
             + +   +G  L  IS + F
Sbjct:   416 SREP--SGQCLPMISHDTF 432

GO:0016020 "membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A0N0X6 LRRN1 "Leucine-rich repeat neuronal protein 1" [Bos taurus (taxid:9913)]

 Score = 316 (116.3 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 114/411 (27%), Positives = 178/411 (43%)

Query:    29 CNLQEANLDVIPSHSNPSIQRLVLSTNRI-KTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
             CN  +  L  IPS+ +   Q L+L +N I KTVD    ++ +L  +D S   +  I   G
Sbjct:    58 CN--DLRLTRIPSNLSSDTQVLLLQSNNIAKTVDELQQLF-NLTELDFSQNNFTNIKEVG 114

Query:    88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-GQNRISRIDQACFEGLTALRILYL 146
                  +L  L L  N+       C        E++   N+IS I    F GL  L  L+L
Sbjct:   115 LANLTQLTTLHLEENQITEMNDYCLQDLSNLQELYINHNQISTISANAFSGLKNLLRLHL 174

Query:   147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             + N+L+ + +  F     L  L +G N    + D  F  L  L +L L G  LT+I  NA
Sbjct:   175 NSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMNFKPLSNLRSLVLAGMYLTDIPGNA 234

Query:   207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
               GL  L SL   DN+L  +P   L K+  L+ L++ +N    ++ G FK +  LK L I
Sbjct:   235 LVGLDSLESLSFYDNKLVKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294

Query:   267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS-FS 325
                  L  V + A  +                 I   A   +P L  L L  NA  + + 
Sbjct:   295 NNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQ 354

Query:   326 ESMLAWPELRTIDIAENPIECGCNILWLR--EMLVR-RNTSAVFCNSPAPLKYKSLISLS 382
             +++ + P LR I I  NP+ C C I W+   +  +R     ++FC  P   + + +  + 
Sbjct:   355 KTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYRGQQVKEVL 414

Query:   383 AEDLGCAGAGLTNISDNAFRG-LS-GLRSLVLTDNRLQSIPTKQLSKLTRL 431
              +D   +   L  IS + F   L+  + + V  D R  + P  ++  +T L
Sbjct:   415 IQD--SSEQCLPMISHDTFPNHLNMDIGTTVFLDCRAMAEPEPEIYWVTPL 463

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6UXK5 LRRN1 "Leucine-rich repeat neuronal protein 1" [Homo sapiens (taxid:9606)]

 Score = 314 (115.6 bits), Expect = 4.2e-25, P = 4.2e-25
 Identities = 114/409 (27%), Positives = 177/409 (43%)

Query:    29 CNLQEANLDVIPSHSNPSIQRLVLSTNRI-KTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
             CN  +  L  IPS+ +   Q L+L +N I KTVD    ++ +L  +D S   +  I   G
Sbjct:    58 CN--DLRLTRIPSNLSSDTQVLLLQSNNIAKTVDELQQLF-NLTELDFSQNNFTNIKEVG 114

Query:    88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-GQNRISRIDQACFEGLTALRILYL 146
                  +L  L L  N+       C        E++   N+IS I    F GL  L  L+L
Sbjct:   115 LANLTQLTTLHLEENQITEMTDYCLQDLSNLQELYINHNQISTISAHAFAGLKNLLRLHL 174

Query:   147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             + N+L+ + +  F     L  L +G N    + D  F  L  L +L L G  LT+I  NA
Sbjct:   175 NSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMNFKPLANLRSLVLAGMYLTDIPGNA 234

Query:   207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
               GL  L SL   DN+L  +P   L K+  L+ L++ +N    ++ G FK +  LK L I
Sbjct:   235 LVGLDSLESLSFYDNKLVKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294

Query:   267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS-FS 325
                  L  V + A  +                 I   A   +P L  L L  NA  + + 
Sbjct:   295 NNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAIYQ 354

Query:   326 ESMLAWPELRTIDIAENPIECGCNILWLR--EMLVR-RNTSAVFCNSPAPLKYKSLISLS 382
             +++ + P LR I I  NP+ C C I W+   +  +R     ++FC  P   K   +  + 
Sbjct:   355 KTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYKGHQVKEVL 414

Query:   383 AEDLGCAGAGLTNISDNAFRG-LS-GLRSLVLTDNRLQSIPTKQLSKLT 429
              +D   +   L  IS ++F   L+  + + V  D R  + P  ++  +T
Sbjct:   415 IQD--SSEQCLPMISHDSFPNRLNVDIGTTVFLDCRAMAEPEPEIYWVT 461

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9H3W5 LRRN3 "Leucine-rich repeat neuronal protein 3" [Homo sapiens (taxid:9606)]

 Score = 310 (114.2 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 99/370 (26%), Positives = 161/370 (43%)

Query:    23 STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
             ST D  CN  +  L   P+    + Q L+L TN I  ++ +    ++L  +DLS      
Sbjct:    51 STVD--CN--DLGLLTFPARLPANTQILLLQTNNIAKIEYSTDFPVNLTGLDLSQNNLSS 106

Query:    83 IPIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTA 140
             +     +   +L+ + L  NK    P++ +  + + + + I   N +S I    F GL  
Sbjct:   107 VTNINVKKMPQLLSVYLEENKLTELPEKCLSELSNLQELYI-NHNLLSTISPGAFIGLHN 165

Query:   141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
             L  L+L+ N+L+ + +  F  L  L  L +G N    + D  F  L  L +L + G  LT
Sbjct:   166 LLRLHLNSNRLQMINSKWFDALPNLEILMIGENPIIRIKDMNFKPLINLRSLVIAGINLT 225

Query:   201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
              I DNA  GL  L S+   DNRL  +P   L K+  L+ L++ +N  + +  G F  + +
Sbjct:   226 EIPDNALVGLENLESISFYDNRLIKVPHVALQKVVNLKFLDLNKNPINRIRRGDFSNMLH 285

Query:   261 LKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENA 320
             LK L I     L  +   A  +                 I   A   LP L  L L  NA
Sbjct:   286 LKELGINNMPELISIDSLAVDNLPDLRKIEATNNPRLSYIHPNAFFRLPKLESLMLNSNA 345

Query:   321 FTSFSESML-AWPELRTIDIAENPIECGCNILWLR--EMLVR-RNTSAVFCNSPAPLKYK 376
              ++     + + P L+ I I  NPI C C I W+   +  +R     ++FC  P   + +
Sbjct:   346 LSALYHGTIESLPNLKEISIHSNPIRCDCVIRWMNMNKTNIRFMEPDSLFCVDPPEFQGQ 405

Query:   377 SLISLSAEDL 386
             ++  +   D+
Sbjct:   406 NVRQVHFRDM 415

GO:0016021 "integral to membrane" evidence=IEA

GO:0001934 "positive regulation of protein phosphorylation" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0030131 "clathrin adaptor complex" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

RGD|69310 Slit2 "slit homolog 2 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 1.7e-24, Sum P(2) = 1.7e-24
 Identities = 88/361 (24%), Positives = 157/361 (43%)

Query:   192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
             +D RG GLT I  N    ++ +R   L  N ++ IP    S   +L  L++  N  S L 
Sbjct:   288 VDCRGKGLTEIPTNLPETITEIR---LEQNSIRVIPPGAFSPYKKLRRLDLSNNQISELA 344

Query:   252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNL 311
                F+GL  L  L + G + +T + K  F +                 +   A   L NL
Sbjct:   345 PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNL 402

Query:   312 YHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 368
               L+L +N   + ++    A   ++T+ +A+NP  C C++ WL + L      TS   C 
Sbjct:   403 NLLSLYDNKLQTVAKGTFSALRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 462

Query:   369 SPAPLKYKSLISLSAEDLGCAGAG--LTNISDNAFRGLS---GLR----SLVLTDNRLQS 419
             SP  L  K +  + ++   C+G     + +S + F  L+     R    ++  ++ +L  
Sbjct:   463 SPRRLANKRIGQIKSKKFRCSGTEDYRSKLSGDCFADLACPEKCRCEGTTVDCSNQKLNK 522

Query:   420 IPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
             IP   + + T   EL +  N F++LEA G FK L  L+++ ++  + +T + +GAF +  
Sbjct:   523 IPD-HIPQYTA--ELRLNNNEFTVLEATGIFKKLPQLRKINLSN-NKITDIEEGAF-EGA 577

Query:   479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENP 537
                            ++     GL +L  L L+ N  +   ++S      +R + + +N 
Sbjct:   578 SGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRISCVGNDSFTGLGSVRLLSLYDNQ 637

Query:   538 I 538
             I
Sbjct:   638 I 638

GO:0001656 "metanephros development" evidence=ISO

GO:0001657 "ureteric bud development" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0002042 "cell migration involved in sprouting angiogenesis" evidence=ISO

GO:0002689 "negative regulation of leukocyte chemotaxis" evidence=ISO

GO:0004963 "follicle-stimulating hormone receptor activity" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=IDA

GO:0006935 "chemotaxis" evidence=IEA

GO:0007409 "axonogenesis" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0007420 "brain development" evidence=IEP

GO:0008045 "motor neuron axon guidance" evidence=ISO

GO:0008201 "heparin binding" evidence=IEA;ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009986 "cell surface" evidence=ISO

GO:0010593 "negative regulation of lamellipodium assembly" evidence=ISO

GO:0010596 "negative regulation of endothelial cell migration" evidence=ISO

GO:0010629 "negative regulation of gene expression" evidence=ISO

GO:0014912 "negative regulation of smooth muscle cell migration" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0021510 "spinal cord development" evidence=IEP

GO:0021772 "olfactory bulb development" evidence=ISO

GO:0021836 "chemorepulsion involved in postnatal olfactory bulb interneuron migration" evidence=ISO

GO:0021972 "corticospinal neuron axon guidance through spinal cord" evidence=ISO

GO:0022029 "telencephalon cell migration" evidence=ISO

GO:0030154 "cell differentiation" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0030336 "negative regulation of cell migration" evidence=ISO

GO:0030837 "negative regulation of actin filament polymerization" evidence=ISO

GO:0031290 "retinal ganglion cell axon guidance" evidence=ISO

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0032870 "cellular response to hormone stimulus" evidence=ISO

GO:0033563 "dorsal/ventral axon guidance" evidence=ISO

GO:0035385 "Roundabout signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043116 "negative regulation of vascular permeability" evidence=ISO

GO:0043237 "laminin-1 binding" evidence=ISO

GO:0043394 "proteoglycan binding" evidence=ISO

GO:0043395 "heparan sulfate proteoglycan binding" evidence=IDA

GO:0045499 "chemorepellent activity" evidence=ISO

GO:0048495 "Roundabout binding" evidence=ISO

GO:0048754 "branching morphogenesis of an epithelial tube" evidence=ISO

GO:0048812 "neuron projection morphogenesis" evidence=ISO

GO:0048846 "axon extension involved in axon guidance" evidence=ISO

GO:0050728 "negative regulation of inflammatory response" evidence=IMP

GO:0050919 "negative chemotaxis" evidence=ISO

GO:0050929 "induction of negative chemotaxis" evidence=ISO

GO:0051058 "negative regulation of small GTPase mediated signal transduction" evidence=ISO

GO:0051414 "response to cortisol stimulus" evidence=ISO

GO:0060603 "mammary gland duct morphogenesis" evidence=ISO

GO:0060763 "mammary duct terminal end bud growth" evidence=ISO

GO:0061364 "apoptotic process involved in luteolysis" evidence=ISO

GO:0070100 "negative regulation of chemokine-mediated signaling pathway" evidence=ISO

GO:0071504 "cellular response to heparin" evidence=ISO

GO:0071672 "negative regulation of smooth muscle cell chemotaxis" evidence=ISO

GO:0071676 "negative regulation of mononuclear cell migration" evidence=ISO

GO:0090024 "negative regulation of neutrophil chemotaxis" evidence=ISO

GO:0090027 "negative regulation of monocyte chemotaxis" evidence=IDA

GO:0090260 "negative regulation of retinal ganglion cell axon guidance" evidence=ISO

GO:0090288 "negative regulation of cellular response to growth factor stimulus" evidence=ISO

GO:0021834 "chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration" evidence=ISO

RGD|1564145 Lrrn1 "leucine rich repeat neuronal 1" [Rattus norvegicus (taxid:10116)]

 Score = 308 (113.5 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 102/363 (28%), Positives = 157/363 (43%)

Query:    29 CNLQEANLDVIPSHSNPSIQRLVLSTNRI-KTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
             CN  +  L  IP + +   Q L+L +N I KTVD    ++ +L  +D S   +  I   G
Sbjct:    58 CN--DLRLTRIPGNLSSDTQVLLLQSNNIAKTVDELQQLF-NLTELDFSQNNFTNIKEVG 114

Query:    88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-GQNRISRIDQACFEGLTALRILYL 146
                  +L  L L  N+       C        E++   N+IS I    F GL  L  L+L
Sbjct:   115 LANLTQLTTLHLEENQISEMTDYCLQDLSNLQELYINHNQISSISANAFSGLKNLLRLHL 174

Query:   147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             + N+L+ + +  F     L  L +G N    + D  F  L  L +L L G  LT+I  NA
Sbjct:   175 NSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTDIPGNA 234

Query:   207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
               GL  L SL   DN+L  +P   L K+  L+ L++ +N    ++ G FK +  LK L I
Sbjct:   235 LVGLDSLESLSFYDNKLIKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294

Query:   267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS-FS 325
                  L  V + A  +                 I   A   +P L  L L  NA  + + 
Sbjct:   295 NNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQ 354

Query:   326 ESMLAWPELRTIDIAENPIECGCNILWLR--EMLVR-RNTSAVFCNSPAPLKYKSLISLS 382
             +++ + P LR I I  NP+ C C I W+   +  +R     ++FC  P   + + +  + 
Sbjct:   355 KTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYRGQQVKEVL 414

Query:   383 AED 385
              +D
Sbjct:   415 IQD 417

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:106038 Lrrn1 "leucine rich repeat protein 1, neuronal" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 2.5e-24, P = 2.5e-24
 Identities = 101/363 (27%), Positives = 157/363 (43%)

Query:    29 CNLQEANLDVIPSHSNPSIQRLVLSTNRI-KTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
             CN  +  L  IP + +   Q L+L +N I KTVD    ++ +L  +D S   +  I   G
Sbjct:    58 CN--DLRLTRIPGNLSSDTQVLLLQSNNIAKTVDELQQLF-NLTELDFSQNNFTNIKEVG 114

Query:    88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-GQNRISRIDQACFEGLTALRILYL 146
                  +L  L L  N+       C        E++   N+IS I    F GL  L  L+L
Sbjct:   115 LANLTQLTTLHLEENQISEMTDYCLQDLSNLQELYINHNQISTISANAFSGLKNLLRLHL 174

Query:   147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             + N+L+ + +  F     L  L +G N    + D  F  L  L +L L G  LT++  NA
Sbjct:   175 NSNKLKVIDSRWFDSTPNLEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTDVPGNA 234

Query:   207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
               GL  L SL   DN+L  +P   L K+  L+ L++ +N    ++ G FK +  LK L I
Sbjct:   235 LVGLDSLESLSFYDNKLIKVPQLALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGI 294

Query:   267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS-FS 325
                  L  V + A  +                 I   A   +P L  L L  NA  + + 
Sbjct:   295 NNMGELVSVDRYALDNLPELTKLEATNNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQ 354

Query:   326 ESMLAWPELRTIDIAENPIECGCNILWLR--EMLVR-RNTSAVFCNSPAPLKYKSLISLS 382
             +++ + P LR I I  NP+ C C I W+   +  +R     ++FC  P   + + +  + 
Sbjct:   355 KTVESLPNLREISIHSNPLRCDCVIHWINSNKTNIRFMEPLSMFCAMPPEYRGQQVKEVL 414

Query:   383 AED 385
              +D
Sbjct:   415 IQD 417

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	581
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-08
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	1e-07
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	1e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-07
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	2e-07
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	3e-07
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	7e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
pfam13306	128	pfam13306, LRR_5, Leucine rich repeats (6 copies)	6e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	6e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	5e-05
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
TIGR00864	2740	TIGR00864, PCC, polycystin cation channel protein	0.004

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 24/58 (41%), Positives = 31/58 (53%)

Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
            L +LDL    LT I D AF+GL  L+ L L+ N L SI  +  S L  L  L++  N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 31/143 (21%), Positives = 56/143 (39%), Gaps = 31/143 (21%)

Query: 200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 259
           T+I D AF   S L S+ +  + + SI                            F G +
Sbjct: 1   TSIGDYAFYNCS-LTSITIPSS-VTSI------------------------GEYAFSGCT 34

Query: 260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
            LK + +   S+LT +   AF +  +L ++T+  +  L +I E A     +L  + +  N
Sbjct: 35  SLKSITLP--SSLTSIGSYAFYNCSSLTSITIPSS--LTSIGEYAFSNCSSLTSITIPSN 90

Query: 320 AFTSFSESMLAWPELRTIDIAEN 342
             T+      +   L++I I  +
Sbjct: 91  -LTTIGSYAFSNCSLKSITIPSS 112

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 50.2 bits (121), Expect = 1e-07
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 6/112 (5%)

Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
           T++ + AF+G   L ++ L  + LT+I   AF   S L S+ +  + L SI     S  +
Sbjct: 23  TSIGEYAFSGCTSLKSITL-PSSLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCS 80

Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 287
            L  + I  +  + + +  F     LK   IT  S++T +   AF++  +L+
Sbjct: 81  SLTSITI-PSNLTTIGSYAFSN-CSLK--SITIPSSVTTIGDYAFSNCSSLK 128

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 30/59 (50%), Positives = 34/59 (57%)

Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL 223
           L  L +  N  T + DGAF GL  L  LDL G  LT+IS  AF GL  LRSL L+ N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 49.8 bits (120), Expect = 2e-07
 Identities = 35/136 (25%), Positives = 67/136 (49%), Gaps = 9/136 (6%)

Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
           T++ D AF     L+++ +  + +T+I + AF G + L+S+ L  + L SI +      +
Sbjct: 1   TSIGDYAFYNCS-LTSITI-PSSVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCS 57

Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
            L  + I  +  + +    F   S L  + I   SNLT +   AF+ N +L+++T+  + 
Sbjct: 58  SLTSITIPSS-LTSIGEYAFSNCSSLTSITIP--SNLTTIGSYAFS-NCSLKSITIPSS- 112

Query: 296 KLKTIEEGALVGLPNL 311
            + TI + A     +L
Sbjct: 113 -VTTIGDYAFSNCSSL 127

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 49.1 bits (118), Expect = 3e-07
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 7/114 (6%)

Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
            +T+I + AF G + L+S+ L  + L SI +      + L  + I  +  + +    F  
Sbjct: 21  SVTSIGEYAFSGCTSLKSITLPSS-LTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSN 78

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 505
            S L  + I   SNLT +   AF+ N +L+++T+  +  +  I + A     +L
Sbjct: 79  CSSLTSITIP--SNLTTIGSYAFS-NCSLKSITIPSS--VTTIGDYAFSNCSSL 127

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 48.3 bits (116), Expect = 7e-07
 Identities = 31/143 (21%), Positives = 55/143 (38%), Gaps = 31/143 (21%)

Query: 394 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
           T+I D AF   S L S+ +  + + SI                            F G +
Sbjct: 1   TSIGDYAFYNCS-LTSITIPSS-VTSI------------------------GEYAFSGCT 34

Query: 454 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
            LK + +   S+LT +   AF +  +L ++T+  +  L  I E A     +L  + +  N
Sbjct: 35  SLKSITLP--SSLTSIGSYAFYNCSSLTSITIPSS--LTSIGEYAFSNCSSLTSITIPSN 90

Query: 514 AFTSFSESMLAWPELRTIDIAEN 536
             T+      +   L++I I  +
Sbjct: 91  -LTTIGSYAFSNCSLKSITIPSS 112

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 45.2 bits (108), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
           LK L+++  + LT +  GAF    NL+ L L+ N  L +I   A  GLP+L  L+L  N
Sbjct: 2   LKSLDLSN-NRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.5 bits (106), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 455 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
           LK L+++  + LT +  GAF    NL+ L L+ N  L  I  +A  GLP+L  L+L  N
Sbjct: 2   LKSLDLSN-NRLTVIPDGAFKGLPNLKVLDLSGN-NLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 20/47 (42%), Positives = 26/47 (55%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
           LT I D AF+GL  L+ L L+ N L SI  +  S L  L  L++  N
Sbjct: 12  LTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|205486 pfam13306, LRR_5, Leucine rich repeats (6 copies)

 Score = 45.6 bits (109), Expect = 6e-06
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
            LT+I   AF   S L S+ +  + L SI     S  + L  + I  +  + + +  F  
Sbjct: 44  SLTSIGSYAFYNCSSLTSITIPSS-LTSIGEYAFSNCSSLTSITI-PSNLTTIGSYAFSN 101

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLE 481
              LK   IT  S++T +   AF++  +L+
Sbjct: 102 -CSLK--SITIPSSVTTIGDYAFSNCSSLK 128

This family includes a number of leucine rich repeats. This family contains a large number of BSPA-like surface antigens from Trichomonas vaginalis. Length = 128

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 48.1 bits (115), Expect = 6e-06
 Identities = 38/152 (25%), Positives = 56/152 (36%), Gaps = 24/152 (15%)

Query: 213 LRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQNGFSMLEAGC---FKGLSYLKRLE 265
           L  LVL  NRL+    + L+K       L+EL +  NG    +AG     +GL     LE
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI--GDAGIRALAEGLKANCNLE 196

Query: 266 ITGASNLTRVRKGA------FADNLNLETLTLNKNP----KLKTIEEGALVGLPNLYHLN 315
           +   +N     +GA       A   +LE L L  N         +    L    +L  L+
Sbjct: 197 VLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLS 256

Query: 316 LKEN-----AFTSFSESMLAWPELRTIDIAEN 342
           L  N          +E +     L  +D+  N
Sbjct: 257 LSCNDITDDGAKDLAEVLAEKESLLELDLRGN 288

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
            L+SL L++NRL  IP      L  L+ L++  N  + +    F GL  L+ L+++G
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 42.9 bits (102), Expect = 1e-05
 Identities = 19/57 (33%), Positives = 31/57 (54%)

Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
            L+SL L++NRL  IP      L  L+ L++  N  + +    F GL  L+ L+++G
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSG 57

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 37/147 (25%), Positives = 54/147 (36%), Gaps = 34/147 (23%)

Query: 407 LRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
           L  LVL  NRL+    + L+K       L+EL +  NG          G+  L       
Sbjct: 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD------AGIRALAE----- 187

Query: 463 ASNLTRVRKGAFADNLNLETLTLNKN---PKLKIIEEDALVGLPNLYHLNLKENAFTS-- 517
                         N NLE L LN N    +      + L  L +L  LNL +N  T   
Sbjct: 188 ----------GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

Query: 518 ---FSESMLAW-PELRTIDIAENPIEC 540
               + ++L+    L T+ ++ N I  
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITD 264

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 45.8 bits (108), Expect = 7e-05
 Identities = 34/124 (27%), Positives = 47/124 (37%), Gaps = 28/124 (22%)

Query: 294 NPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL-- 351
           N K+ TIEEG    L NL                         ID++ NP EC C +   
Sbjct: 4   NNKISTIEEGICANLCNLSE-----------------------IDLSGNPFECDCGLARL 40

Query: 352 --WLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
             W  E  V+ R   A  C  P  L  + L+ +   D GC    +  + DN+  G +   
Sbjct: 41  PRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGCDEEYVACLKDNSSGGGAARS 100

Query: 409 SLVL 412
            LV+
Sbjct: 101 ELVI 104

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 343
           NL++L L+ N +L  I +GA  GLPNL  L+L  N  TS S    +  P LR++D++ N 
Sbjct: 1   NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 344 I 344
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
           NL++L L+ N +L +I + A  GLPNL  L+L  N  TS S    +  P LR++D++ N 
Sbjct: 1   NLKSLDLSNN-RLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 538 I 538
           +
Sbjct: 60  L 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
            L+ L++  N  +++  G FKGL  LK L+++G +NLT +   AF+   +L +L L+ N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 38.7 bits (91), Expect = 4e-04
 Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 430 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489
            L+ L++  N  +++  G FKGL  LK L+++G +NLT +   AF+   +L +L L+ N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSG-NNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 16/48 (33%), Positives = 23/48 (47%)

Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL 168
               NR++ I    F+GL  L++L L  N L S+   +F  L  L  L
Sbjct: 6   DLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSL 53

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 103/432 (23%), Positives = 172/432 (39%), Gaps = 41/432 (9%)

Query: 125 NRIS-RIDQACFEGLTALRILYLDDNQLR-SVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
           N++S  I    F   ++LR L L +N    S+P  S   +  L  L +  N+ +      
Sbjct: 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS---IPNLETLDLSNNMLSGEIPND 159

Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
                 L  LDL G  L     N+   L+ L  L L  N+L     ++L ++  L+ + +
Sbjct: 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219

Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
           G N  S        GL+ L  L++   +NLT     +  +  NL+ L L +N KL     
Sbjct: 220 GYNNLSGEIPYEIGGLTSLNHLDLV-YNNLTGPIPSSLGNLKNLQYLFLYQN-KLSGPIP 277

Query: 303 GALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362
            ++  L  L  L+L +N+ +     ++   +L+ ++           IL L         
Sbjct: 278 PSIFSLQKLISLDLSDNSLSGEIPELVI--QLQNLE-----------ILHLFSNNFTGKI 324

Query: 363 SAVFCNSPAPLKYKSLIS--LSAE---DLGCAGAGLT--NISDNAFRGL-------SG-L 407
                + P  L+   L S   S E   +LG     LT  ++S N   G        SG L
Sbjct: 325 PVALTSLPR-LQVLQLWSNKFSGEIPKNLG-KHNNLTVLDLSTNNLTGEIPEGLCSSGNL 382

Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
             L+L  N L+    K L     L  + +  N FS      F  L  +  L+I+  +NL 
Sbjct: 383 FKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDIS-NNNLQ 441

Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESMLAWP 526
                   D  +L+ L+L +N     + +    G   L +L+L  N F+ +    + +  
Sbjct: 442 GRINSRKWDMPSLQMLSLARNKFFGGLPD--SFGSKRLENLDLSRNQFSGAVPRKLGSLS 499

Query: 527 ELRTIDIAENPI 538
           EL  + ++EN +
Sbjct: 500 ELMQLKLSENKL 511

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 39.6 bits (92), Expect = 0.003
 Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 6/147 (4%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           +T+I        S L+ L L+DN+++S+P+  L  L  L+ L++  N  S L       L
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIESLPS-PLRNLPNLKNLDLSFNDLSDLPKLLSN-L 185

Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
           S L  L+++G  N              LE L L+ N  ++++   +L  L NL  L L  
Sbjct: 186 SNLNNLDLSG--NKISDLPPEIELLSALEELDLSNNSIIELL--SSLSNLKNLSGLELSN 241

Query: 513 NAFTSFSESMLAWPELRTIDIAENPIE 539
           N      ES+     L T+D++ N I 
Sbjct: 242 NKLEDLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|188093 TIGR00864, PCC, polycystin cation channel protein

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 528 LRTIDIAENPIECGCNIL----WLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLG 581
           L  ID++ NP EC C +     W  E  V+ R   A  C  P  L  + L+ +   D G
Sbjct: 21  LSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSG 79

The Polycystin Cation Channel (PCC) Family (TC 1.A.5) Polycystin is a huge protein of 4303aas. Its repeated leucine-rich (LRR) segment is found in many proteins. It contains 16 polycystic kidney disease (PKD) domains, one LDL-receptor class A domain, one C-type lectin family domain, and 16-18 putative TMSs in positions between residues 2200 and 4100. Polycystin-L has been shown to be a cation (Na+, K+ and Ca2+) channel that is activated by Ca2+. Two members of the PCC family (polycystin 1 and 2) are mutated in autosomal dominant polycystic kidney disease, and polycystin-L is deleted in mice with renal and retinal defects. Note: this model is restricted to the amino half for technical reasons. Length = 2740

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	581
KOG4194|consensus	873		100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194|consensus	873		100.0
KOG4237|consensus	498		100.0
KOG0472|consensus	565		100.0
KOG0472|consensus	565		99.96
KOG4237|consensus	498		99.96
KOG0444|consensus	1255		99.95
KOG0618|consensus	1081		99.94
KOG0444|consensus	1255		99.93
KOG0618|consensus	1081		99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.82
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.78
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.64
KOG0617|consensus	264		99.49
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.48
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.43
KOG0617|consensus	264		99.43
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.17
KOG3207|consensus	505		99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.05
KOG1259|consensus	490		98.96
KOG1259|consensus	490		98.94
KOG3207|consensus	505		98.91
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.91
KOG1909|consensus	382		98.9
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.89
KOG1909|consensus	382		98.88
KOG0532|consensus	722		98.87
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.86
KOG4658|consensus	889		98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.73
KOG1859|consensus	1096		98.65
KOG4658|consensus	889		98.62
KOG0531|consensus	414		98.6
KOG0531|consensus	414		98.6
KOG0532|consensus	722		98.5
KOG2982|consensus	418		98.47
PLN03150	623	hypothetical protein; Provisional	98.46
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	98.43
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.39
KOG2120|consensus	419		98.37
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	98.35
PLN03150	623	hypothetical protein; Provisional	98.31
KOG2120|consensus	419		98.28
KOG4341|consensus	483		98.27
KOG4341|consensus	483		98.19
KOG1644|consensus	233		98.17
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.16
KOG1859|consensus	1096		98.12
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG1644|consensus	233		97.93
KOG2982|consensus	418		97.89
KOG4579|consensus	177		97.79
smart00082	51	LRRCT Leucine rich repeat C-terminal domain.	97.75
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.54
KOG3665|consensus	699		97.51
KOG4579|consensus	177		97.48
KOG3665|consensus	699		97.44
PRK15386	426	type III secretion protein GogB; Provisional	97.31
KOG2123|consensus	388		97.12
KOG3864|consensus	221		96.49
KOG2123|consensus	388		96.21
KOG2739|consensus	260		96.1
KOG2739|consensus	260		95.93
KOG1947|consensus	482		95.84
KOG1947|consensus	482		95.82
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.8
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.59
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.52
smart00013	33	LRRNT Leucine rich repeat N-terminal domain.	95.43
PF01462	28	LRRNT: Leucine rich repeat N-terminal domain; Inte	95.22
KOG3864|consensus	221		94.43
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.7
smart00370	26	LRR Leucine-rich repeats, outliers.	92.4
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.4
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	92.31
smart00370	26	LRR Leucine-rich repeats, outliers.	91.98
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.98
PF01463	25	LRRCT: Leucine rich repeat C-terminal domain; Inte	87.23
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.52
KOG4308|consensus	478		82.93
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.78
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	80.77

>KOG4194|consensus

Probab=100.00  E-value=2.6e-50  Score=383.98  Aligned_cols=448  Identities=31%  Similarity=0.481  Sum_probs=308.6

Q ss_pred             ccchhhhhhhcCCCCCCCCCCccCCCccccccCCCccC-----CCCCCcCccEEEcccCCccccc-ccccCCCcccEEEc
Q psy8551           2 LVDAGQELRSKCMNPYEPSRFSTRDPSCNLQEANLDVI-----PSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDL   75 (581)
Q Consensus         2 ~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~i-----p~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~l   75 (581)
                      +++||---+.-||..|+|..   ....|  +++.++++     +..+|+..+.|++++|.+..+. ..|.++++|+.+.+
T Consensus        35 vvd~ga~~~~~cpa~c~c~~---~lldc--s~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l  109 (873)
T KOG4194|consen   35 VVDAGAGDLSECPATCPCNT---RLLDC--SDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNL  109 (873)
T ss_pred             ccccCCCccccCCCcCCCCc---eeeec--CccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeee
Confidence            56777777789999999998   77899  99999987     6667788899999999998764 46888999999999


Q ss_pred             CCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccC
Q psy8551          76 SHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP  155 (581)
Q Consensus        76 s~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~  155 (581)
                      ..|.++.+|. .-....+|+.|+|.+|.                       |+.+....++.++.|++||++.|.|+.++
T Consensus       110 ~~N~Lt~IP~-f~~~sghl~~L~L~~N~-----------------------I~sv~se~L~~l~alrslDLSrN~is~i~  165 (873)
T KOG4194|consen  110 NKNELTRIPR-FGHESGHLEKLDLRHNL-----------------------ISSVTSEELSALPALRSLDLSRNLISEIP  165 (873)
T ss_pred             ccchhhhccc-ccccccceeEEeeeccc-----------------------cccccHHHHHhHhhhhhhhhhhchhhccc
Confidence            9998888884 23333457777777764                       44455555666667777777777776666


Q ss_pred             CcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCC
Q psy8551         156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT  235 (581)
Q Consensus       156 ~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  235 (581)
                      ...|..-.++++|+|++|.|+.+..+.|.++.+|..|.|++|+++.+++..|..+                        +
T Consensus       166 ~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L------------------------~  221 (873)
T KOG4194|consen  166 KPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRL------------------------P  221 (873)
T ss_pred             CCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhc------------------------c
Confidence            6555555566666666666665555555555555555555555555554444444                        4


Q ss_pred             CCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEe
Q psy8551         236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN  315 (581)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  315 (581)
                      +|+.|++..|.+.......|.++++|+.+.+..| .+....++.|..+.++++|++..| .+..+..+++.++++|+.|+
T Consensus       222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             hhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhc
Confidence            4444454444444443334444444444444432 233333334444455555555555 56666666666777777777


Q ss_pred             cCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCcc
Q psy8551         316 LKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLT  394 (581)
Q Consensus       316 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  394 (581)
                      ++.|.|..+.. .+..                                                                
T Consensus       300 lS~NaI~rih~d~Wsf----------------------------------------------------------------  315 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSF----------------------------------------------------------------  315 (873)
T ss_pred             cchhhhheeecchhhh----------------------------------------------------------------
Confidence            77776664432 2222                                                                


Q ss_pred             ccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEe---cC
Q psy8551         395 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV---RK  471 (581)
Q Consensus       395 ~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~  471 (581)
                               ++.|+.|+++.|.++.++++.|..+..|++|.+++|.++.+...+|..+++|++|++++|. +.-.   ..
T Consensus       316 ---------tqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa  385 (873)
T KOG4194|consen  316 ---------TQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAA  385 (873)
T ss_pred             ---------cccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecch
Confidence                     4556666666666666666666666667777777777666666666666777777776643 2211   33


Q ss_pred             CccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec-cccccCCcceEEecCCCcccccCchhHHHHH
Q psy8551         472 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREM  550 (581)
Q Consensus       472 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~  550 (581)
                      ..|..+++|+.|++.+| +++.++..+|.++++|+.|+|.+|.|.++. +.+..+ .|++|-+..-.+.|||.++||.+|
T Consensus       386 ~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qW  463 (873)
T KOG4194|consen  386 VAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQW  463 (873)
T ss_pred             hhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHH
Confidence            45777889999999999 999999999999999999999999999875 556666 999999999999999999999999


Q ss_pred             Hhhc---CCCceeeCCCcccccccccccCcccc
Q psy8551         551 LVRR---NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       551 ~~~~---~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      +.++   ......|..|+.+.|+.+.+++.+++
T Consensus       464 l~~~~lq~sv~a~CayPe~Lad~~i~svd~~~l  496 (873)
T KOG4194|consen  464 LYRRKLQSSVIAKCAYPEPLADQSIVSVDTANL  496 (873)
T ss_pred             HHhcccccceeeeccCCcccccceeEeechhhc
Confidence            9875   33344799999999999999998875

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.7e-41  Score=378.32  Aligned_cols=479  Identities=21%  Similarity=0.210  Sum_probs=352.7

Q ss_pred             ccCCCc-cCCCCC---CcCccEEEcccCCccc-ccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCC
Q psy8551          32 QEANLD-VIPSHS---NPSIQRLVLSTNRIKT-VDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFP  106 (581)
Q Consensus        32 ~~~~l~-~ip~~~---~~~l~~L~L~~~~i~~-l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~  106 (581)
                      .++.+. .+|..+   .++|++|+|++|.+.. +|.  ..+++|++|++++|.++...+..+..+++|++|++++|.+ .
T Consensus       101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l-~  177 (968)
T PLN00113        101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVL-V  177 (968)
T ss_pred             CCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcc-c
Confidence            445554 566654   3789999999998874 443  4688999999999988866566788899999999999875 2


Q ss_pred             cccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCC
Q psy8551         107 QQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN  184 (581)
Q Consensus       107 ~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  184 (581)
                      ...+..+...++|+  +++.|.+....+..++++++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+.
T Consensus       178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  257 (968)
T PLN00113        178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG  257 (968)
T ss_pred             ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHh
Confidence            23334455667777  6667888877777888999999999999988866666788899999999999988877777788


Q ss_pred             CCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCccccee
Q psy8551         185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL  264 (581)
Q Consensus       185 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L  264 (581)
                      ++++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus       258 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  337 (968)
T PLN00113        258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVL  337 (968)
T ss_pred             CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEE
Confidence            89999999999998887777778888999999999998887666778888999999999998887777778888999999


Q ss_pred             eecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCC
Q psy8551         265 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENP  343 (581)
Q Consensus       265 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~  343 (581)
                      ++.+|. +....+..+..+.+|+.|++++|...+.++ ..+..+++|+.+++++|.+. .+|..+..+++|+.|++++|.
T Consensus       338 ~L~~n~-l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p-~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~  415 (968)
T PLN00113        338 QLWSNK-FSGEIPKNLGKHNNLTVLDLSTNNLTGEIP-EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS  415 (968)
T ss_pred             ECcCCC-CcCcCChHHhCCCCCcEEECCCCeeEeeCC-hhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence            998864 333344456777889999998884334444 35677788888888888877 456677778888888888887


Q ss_pred             CccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChh
Q psy8551         344 IECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK  423 (581)
Q Consensus       344 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~  423 (581)
                      +.+..+. ++                      ..+..+...+  ...+.+.......+..+++|+.|++++|.+.+..+.
T Consensus       416 l~~~~p~-~~----------------------~~l~~L~~L~--Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~  470 (968)
T PLN00113        416 FSGELPS-EF----------------------TKLPLVYFLD--ISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD  470 (968)
T ss_pred             eeeECCh-hH----------------------hcCCCCCEEE--CcCCcccCccChhhccCCCCcEEECcCceeeeecCc
Confidence            6532211 00                      0111111111  112222333333445577888888888877755544


Q ss_pred             hhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCC
Q psy8551         424 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP  503 (581)
Q Consensus       424 ~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~  503 (581)
                      .+ ..++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..+.++++|++|++++| .+....+..+..++
T Consensus       471 ~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~  547 (968)
T PLN00113        471 SF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHN-QLSGQIPASFSEMP  547 (968)
T ss_pred             cc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCC-cccccCChhHhCcc
Confidence            33 4577888888888888777777778888888888874 566666667777888888888888 44443356677888


Q ss_pred             CccEEEcCCCcce-eeccccccCCcceEEecCCCcccccCc
Q psy8551         504 NLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       504 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~l~~np~~c~c~  543 (581)
                      +|++|++++|.++ .+|..+..+++|+.+++++|++.+..+
T Consensus       548 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p  588 (968)
T PLN00113        548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP  588 (968)
T ss_pred             cCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence            8888888888877 577777778888888888888877655

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=6.2e-41  Score=376.48  Aligned_cols=507  Identities=21%  Similarity=0.188  Sum_probs=365.2

Q ss_pred             CCccCCCccccccCCCccCCCCCCcCccEEEcccCCccc-ccccccCCCcccEEEcCCCcee-ecCCCCCCCCCcccEEe
Q psy8551          21 RFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKT-VDSAIPIYLSLQHVDLSHTTWL-IIPIGGFEPQEKLVELQ   98 (581)
Q Consensus        21 ~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~-l~~~~~~~~~L~~L~ls~~~l~-~~~~~~~~~l~~L~~L~   98 (581)
                      .|......|.|.+.....     ..+++.|+|+++.+.. ++..+..+++|++|++++|.+. .+|...+..+++|++|+
T Consensus        50 ~w~~~~~~c~w~gv~c~~-----~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~  124 (968)
T PLN00113         50 NWNSSADVCLWQGITCNN-----SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN  124 (968)
T ss_pred             CCCCCCCCCcCcceecCC-----CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEE
Confidence            344445677665555532     2478999999988874 4567888999999999999887 57766677889999999


Q ss_pred             CCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcce
Q psy8551          99 LNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT  176 (581)
Q Consensus        99 l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~  176 (581)
                      +++|.+.. ..+.  ...+.|+  +++.|.++...+..++++++|++|++++|.+....+..+.++++|++|++++|.+.
T Consensus       125 Ls~n~l~~-~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  201 (968)
T PLN00113        125 LSNNNFTG-SIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV  201 (968)
T ss_pred             CcCCcccc-ccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc
Confidence            99887621 1111  2235566  66778887777777888999999999999887665557888899999999999888


Q ss_pred             eccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccC
Q psy8551         177 TLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK  256 (581)
Q Consensus       177 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  256 (581)
                      +..+..+.++++|+.|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+.
T Consensus       202 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~  281 (968)
T PLN00113        202 GQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF  281 (968)
T ss_pred             CcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHh
Confidence            77777788889999999999988877777788889999999999988866667788889999999999888877666778


Q ss_pred             CCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcc
Q psy8551         257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELR  335 (581)
Q Consensus       257 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~  335 (581)
                      .+++|+.|++++|. +....+..+..+++|+.|++++|...+.++ ..+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus       282 ~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~  359 (968)
T PLN00113        282 SLQKLISLDLSDNS-LSGEIPELVIQLQNLEILHLFSNNFTGKIP-VALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLT  359 (968)
T ss_pred             hccCcCEEECcCCe-eccCCChhHcCCCCCcEEECCCCccCCcCC-hhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCc
Confidence            88889999998763 444445566778889999998884444443 46788888999999988887 5666777888899


Q ss_pred             eEEccCCCCccCCchhhHHHHHhhc--CCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcC
Q psy8551         336 TIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLT  413 (581)
Q Consensus       336 ~L~l~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~  413 (581)
                      .|++++|.+.+..+. ++.......  ...........+.....+..+..  +....+.+.......|..++.|+.|+++
T Consensus       360 ~L~Ls~n~l~~~~p~-~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~--L~L~~n~l~~~~p~~~~~l~~L~~L~Ls  436 (968)
T PLN00113        360 VLDLSTNNLTGEIPE-GLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR--VRLQDNSFSGELPSEFTKLPLVYFLDIS  436 (968)
T ss_pred             EEECCCCeeEeeCCh-hHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE--EECcCCEeeeECChhHhcCCCCCEEECc
Confidence            999988877543221 111000000  00000000000000111112211  2222333333344556677888888888


Q ss_pred             CCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCcee
Q psy8551         414 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKI  493 (581)
Q Consensus       414 ~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~  493 (581)
                      +|.+++..+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++| .+....+..+.++++|+.|++++| .+..
T Consensus       437 ~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~  513 (968)
T PLN00113        437 NNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRN-QFSGAVPRKLGSLSELMQLKLSEN-KLSG  513 (968)
T ss_pred             CCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCC-ccCCccChhhhhhhccCEEECcCC-ccee
Confidence            888887766677778888888888888877666544 4578888888874 566666677888999999999999 4544


Q ss_pred             ecCCccCCCCCccEEEcCCCccee-eccccccCCcceEEecCCCcccccCc
Q psy8551         494 IEEDALVGLPNLYHLNLKENAFTS-FSESMLAWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       494 ~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~l~~np~~c~c~  543 (581)
                      ..+..+.++++|++|++++|.+++ +|..+..+++|+.|++++|+++..-+
T Consensus       514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p  564 (968)
T PLN00113        514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIP  564 (968)
T ss_pred             eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCC
Confidence            445678899999999999999884 67788889999999999999976444

>KOG4194|consensus

Probab=100.00  E-value=2.7e-37  Score=295.25  Aligned_cols=421  Identities=25%  Similarity=0.370  Sum_probs=293.5

Q ss_pred             CCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-ccc--CCCcccEEEcCCCceeecCCCCCCCC
Q psy8551          15 NPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIP--IYLSLQHVDLSHTTWLIIPIGGFEPQ   91 (581)
Q Consensus        15 ~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~--~~~~L~~L~ls~~~l~~~~~~~~~~l   91 (581)
                      ..|+|..   --+.|  +.-.....|...+-+.+-|+.++..+..+.. .+.  ....-++||+++|++..+....|.++
T Consensus        27 g~~~~~g---~vvd~--ga~~~~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl  101 (873)
T KOG4194|consen   27 GLCHCVG---NVVDA--GAGDLSECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNL  101 (873)
T ss_pred             HHHHhcC---ccccc--CCCccccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcC
Confidence            4455554   34566  5555566788888888888888888876532 111  12345567777777776666666666


Q ss_pred             CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551          92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG  171 (581)
Q Consensus        92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~  171 (581)
                      ++|+++++..|.                                               ++.+|. ...-..+|+.|+|.
T Consensus       102 ~nLq~v~l~~N~-----------------------------------------------Lt~IP~-f~~~sghl~~L~L~  133 (873)
T KOG4194|consen  102 PNLQEVNLNKNE-----------------------------------------------LTRIPR-FGHESGHLEKLDLR  133 (873)
T ss_pred             Ccceeeeeccch-----------------------------------------------hhhccc-ccccccceeEEeee
Confidence            666666666653                                               333332 11112234455555


Q ss_pred             CCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccC
Q psy8551         172 LNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  251 (581)
Q Consensus       172 ~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~  251 (581)
                      +|.|..+....+..++.|+.|||+.|.++.+....|..-.++++|+|+.|.|+.+..+.|..+.+|..|.+++|.++.++
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp  213 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLP  213 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccC
Confidence            55544444444555555555555555556555556666678888888888888888788888889999999999999999


Q ss_pred             CcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCC
Q psy8551         252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW  331 (581)
Q Consensus       252 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~  331 (581)
                      ...|.+++.|+.|++..| .+..+....|.++.+|+.+.+..| .+..+..++|..+.++++|++..|.++.+.      
T Consensus       214 ~r~Fk~L~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn------  285 (873)
T KOG4194|consen  214 QRSFKRLPKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLETNRLQAVN------  285 (873)
T ss_pred             HHHhhhcchhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeecccchhhhhh------
Confidence            988988888888888764 333333444444445555555444 444444444444444444444444444332      


Q ss_pred             CCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEE
Q psy8551         332 PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLV  411 (581)
Q Consensus       332 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~  411 (581)
                                                                                        ..++-+++.|+.|+
T Consensus       286 ------------------------------------------------------------------~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  286 ------------------------------------------------------------------EGWLFGLTSLEQLD  299 (873)
T ss_pred             ------------------------------------------------------------------cccccccchhhhhc
Confidence                                                                              22344567788888


Q ss_pred             cCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCc
Q psy8551         412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL  491 (581)
Q Consensus       412 l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l  491 (581)
                      ++.|.+..+.++.+..+++|++|++++|.++..++..|..+..|++|.++. +.++.+....|..+.+|++||++.| .+
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N-~l  377 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSN-EL  377 (873)
T ss_pred             cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCC-eE
Confidence            888888877778899999999999999999999999999999999999998 6889999999999999999999999 55


Q ss_pred             eeecC---CccCCCCCccEEEcCCCcceeec-cccccCCcceEEecCCCcccccCchhHHHHHH-hh--cCCCceeeCCC
Q psy8551         492 KIIEE---DALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREML-VR--RNTSAVFCNSP  564 (581)
Q Consensus       492 ~~~~~---~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~-~~--~~~~~~~c~~~  564 (581)
                      ...-+   ..|.++++|+.|++.+|++..++ ..+..++.|++|++.+|+|...=.. .|..+- ++  -+.....|++.
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n-AFe~m~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN-AFEPMELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc-ccccchhhhhhhcccceEEecc
Confidence            44332   35888999999999999999999 4577899999999999999654332 344432 22  36777788876


Q ss_pred             c
Q psy8551         565 A  565 (581)
Q Consensus       565 ~  565 (581)
                      .
T Consensus       457 l  457 (873)
T KOG4194|consen  457 L  457 (873)
T ss_pred             H
Confidence            4

>KOG4237|consensus

Probab=100.00  E-value=6.4e-35  Score=266.76  Aligned_cols=445  Identities=23%  Similarity=0.390  Sum_probs=307.3

Q ss_pred             hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCC
Q psy8551          10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF   88 (581)
Q Consensus        10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~   88 (581)
                      ..+||.+|+|.......|.|  .+.+++.||.++|+....++|..|+|+.+|+ +|..+++|+.||||+|+|+.|.+.+|
T Consensus        34 ~~~CP~pC~Cs~~~g~~VdC--r~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF  111 (498)
T KOG4237|consen   34 ASACPAPCTCSDVEGGIVDC--RGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAF  111 (498)
T ss_pred             cccCCCCcccCCCCCceEEc--cCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhh
Confidence            56999999999877889999  9999999999999999999999999999986 89999999999999999999999999


Q ss_pred             CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551          89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL  168 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  168 (581)
                      .++++|..|-+-++                      |+|++++...|+++..|+.|.+.-|++..+..+.|..++++..|
T Consensus       112 ~GL~~l~~Lvlyg~----------------------NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lL  169 (498)
T KOG4237|consen  112 KGLASLLSLVLYGN----------------------NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLL  169 (498)
T ss_pred             hhhHhhhHHHhhcC----------------------CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchh
Confidence            99988776665552                      23566666666666666666666666666666666666666666


Q ss_pred             ECCCCcceeccCCcCCCCCCCcEEEcCCCCcc------------ccCccccCCCCCCcEEECCCCcCCccCccccCCC-C
Q psy8551         169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT------------NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-T  235 (581)
Q Consensus       169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~------------~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-~  235 (581)
                      .+..|.+..+....|..+..++.+.+..|...            ...+..++......-..+.+.++..+....+.-. .
T Consensus       170 slyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~e  249 (498)
T KOG4237|consen  170 SLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLE  249 (498)
T ss_pred             cccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHH
Confidence            66666666666555666666666665555411            1111122222223333333333333333222211 1


Q ss_pred             CCC-EEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEE
Q psy8551         236 RLE-ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL  314 (581)
Q Consensus       236 ~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L  314 (581)
                      .+. .+.-..+.....+...|..+++|+++++++| .++.+.+.+|.+..++++|.+.+| .+..+..++|.++..|+.|
T Consensus       250 sl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL  327 (498)
T KOG4237|consen  250 SLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTL  327 (498)
T ss_pred             hHHHhhccccCcCCcChHHHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceee
Confidence            111 1111122233344556888888888888875 788888888999999999999999 7999999999999999999


Q ss_pred             ecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhhcC-CCceeecCCCcccccccccCCccccccCCCC
Q psy8551         315 NLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN-TSAVFCNSPAPLKYKSLISLSAEDLGCAGAG  392 (581)
Q Consensus       315 ~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  392 (581)
                      ++.+|+|+.+. .+|....+|..|.+-.|++.|.|-+.|+..+..... .....|..|...+...+..+...+..+.+..
T Consensus       328 ~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~e  407 (498)
T KOG4237|consen  328 SLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPE  407 (498)
T ss_pred             eecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCcc
Confidence            99999999665 467788999999999999999999999998876554 4557788888888777777777777666333


Q ss_pred             ccccCcccc--CCCCCCCE-EEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEe
Q psy8551         393 LTNISDNAF--RGLSGLRS-LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV  469 (581)
Q Consensus       393 ~~~i~~~~~--~~~~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~  469 (581)
                      -........  +.|+.+.+ ...++..+..++++ +  -..-.+|.+.+|.++.++..   .+.+| .+++++ +.+..+
T Consensus       408 e~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~-i--P~d~telyl~gn~~~~vp~~---~~~~l-~~dls~-n~i~~L  479 (498)
T KOG4237|consen  408 ELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRG-I--PVDVTELYLDGNAITSVPDE---LLRSL-LLDLSN-NRISSL  479 (498)
T ss_pred             ccCCCCCCCCCCCcchhhhhHhhcccchhhcCCC-C--CchhHHHhcccchhcccCHH---HHhhh-hccccc-Cceehh
Confidence            222211111  12333332 33444444444321 1  12345667777777776654   44455 666665 566666


Q ss_pred             cCCccCCCCCCCeeeCCCC
Q psy8551         470 RKGAFADNLNLETLTLNKN  488 (581)
Q Consensus       470 ~~~~~~~~~~L~~L~l~~~  488 (581)
                      ....|.++++|.+|.+++|
T Consensus       480 sn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  480 SNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             hcccccchhhhheeEEecC
Confidence            6667788888888877764

>KOG0472|consensus

Probab=100.00  E-value=9.8e-37  Score=279.00  Aligned_cols=470  Identities=24%  Similarity=0.338  Sum_probs=340.7

Q ss_pred             cccCCCccCCCCCC---------------cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCccc
Q psy8551          31 LQEANLDVIPSHSN---------------PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV   95 (581)
Q Consensus        31 ~~~~~l~~ip~~~~---------------~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~   95 (581)
                      ++++.+.++|..+.               -.++++.++.|.++.+.+.+.++..|.++++++|++..+|+ ++..+.+++
T Consensus        16 lsnr~l~~vp~~vyq~~~t~~e~e~wW~qv~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~-aig~l~~l~   94 (565)
T KOG0472|consen   16 LSNRSLKDVPTEVYQINLTTGEGENWWEQVDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPA-AIGELEALK   94 (565)
T ss_pred             cccchhhhccHHHHHHHhhccchhhhhhhcchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCH-HHHHHHHHH
Confidence            35566666666543               36788889999888888888888999999999998888885 577788888


Q ss_pred             EEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcc
Q psy8551          96 ELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF  175 (581)
Q Consensus        96 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~  175 (581)
                      .+++++|.+                       ..+ +.+++...+++.++.+.|.+..++. .++.+..+..++..+|++
T Consensus        95 ~l~vs~n~l-----------------------s~l-p~~i~s~~~l~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i  149 (565)
T KOG0472|consen   95 SLNVSHNKL-----------------------SEL-PEQIGSLISLVKLDCSSNELKELPD-SIGRLLDLEDLDATNNQI  149 (565)
T ss_pred             HhhcccchH-----------------------hhc-cHHHhhhhhhhhhhccccceeecCc-hHHHHhhhhhhhcccccc
Confidence            888888763                       333 3346677888888888888888877 667788888888888888


Q ss_pred             eeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCccc
Q psy8551         176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF  255 (581)
Q Consensus       176 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  255 (581)
                      ...++ .+.++.++..+++.+|++...++..+. ++.|++|+...|-++.+|+ .++.+.+|..|++..|++...+  .|
T Consensus       150 ~slp~-~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef  224 (565)
T KOG0472|consen  150 SSLPE-DMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRFLP--EF  224 (565)
T ss_pred             ccCch-HHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhcccccCC--CC
Confidence            88776 467788888888888888888776665 8888888888888888884 5888888888888888888777  37


Q ss_pred             CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcc
Q psy8551         256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR  335 (581)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  335 (581)
                      +++..|+++.++.| .+.-+++.....+.++..|++++| .+.++|.. +..+++|.+||+++|.++.+|..++++ .|+
T Consensus       225 ~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde-~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~  300 (565)
T KOG0472|consen  225 PGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDE-ICLLRSLERLDLSNNDISSLPYSLGNL-HLK  300 (565)
T ss_pred             CccHHHHHHHhccc-HHHhhHHHHhcccccceeeecccc-ccccCchH-HHHhhhhhhhcccCCccccCCcccccc-eee
Confidence            88888888888764 566677777778889999999999 78888874 667889999999999999999999988 999


Q ss_pred             eEEccCCCCccC------C----chhhHHHHHhhcCCCcee------ecCCCcccccccccCCccccccCCCCccccCcc
Q psy8551         336 TIDIAENPIECG------C----NILWLREMLVRRNTSAVF------CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN  399 (581)
Q Consensus       336 ~L~l~~~~~~~~------~----~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~  399 (581)
                      .|.+.+|++...      +    ...+++............      .+.+....-......+...+..+...++.++..
T Consensus       301 ~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdE  380 (565)
T KOG0472|consen  301 FLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDE  380 (565)
T ss_pred             ehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHH
Confidence            999999987521      1    234444433322222110      111111111112223333344455566666666


Q ss_pred             ccCCCC--CCCEEEcCCCcCCccC-----------------------hhhhcCCCCCcEeecCCCcceeeccccccCCcc
Q psy8551         400 AFRGLS--GLRSLVLTDNRLQSIP-----------------------TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY  454 (581)
Q Consensus       400 ~~~~~~--~L~~L~l~~n~l~~~~-----------------------~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~  454 (581)
                      .|+.-+  .++++++++|++.++|                       +..++.+++|..|++++|-+-+.+.. ++.+.+
T Consensus       381 Vfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-~~~lv~  459 (565)
T KOG0472|consen  381 VFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-MGSLVR  459 (565)
T ss_pred             HHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-hhhhhh
Confidence            665422  3566667766655443                       34456667777777777665555433 455566


Q ss_pred             ccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecC
Q psy8551         455 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIA  534 (581)
Q Consensus       455 L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~  534 (581)
                      |+.++++.| .+..+ +..+.....+|.+-.++| +++.++++.+.++.+|+.||+.+|.+..+|+.++++.+|++|++.
T Consensus       460 Lq~LnlS~N-rFr~l-P~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  460 LQTLNLSFN-RFRML-PECLYELQTLETLLASNN-QIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELD  536 (565)
T ss_pred             hheeccccc-ccccc-hHHHhhHHHHHHHHhccc-cccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEec
Confidence            777777763 33322 222233345555555556 888888888999999999999999999999999999999999999


Q ss_pred             CCccc
Q psy8551         535 ENPIE  539 (581)
Q Consensus       535 ~np~~  539 (581)
                      ||||.
T Consensus       537 gNpfr  541 (565)
T KOG0472|consen  537 GNPFR  541 (565)
T ss_pred             CCccC
Confidence            99996

>KOG0472|consensus

Probab=99.96  E-value=8.2e-34  Score=259.92  Aligned_cols=449  Identities=21%  Similarity=0.327  Sum_probs=287.0

Q ss_pred             ccCCCccCCCCCC--cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCccc
Q psy8551          32 QEANLDVIPSHSN--PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQI  109 (581)
Q Consensus        32 ~~~~l~~ip~~~~--~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  109 (581)
                      +++.+..+|..+.  ..+..++.+.|++..+|+.+..+..|..+++++|.+..++. .+.++-.|+.++..+|++.  ..
T Consensus        76 ~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~-~i~~~~~l~dl~~~~N~i~--sl  152 (565)
T KOG0472|consen   76 HDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPD-SIGRLLDLEDLDATNNQIS--SL  152 (565)
T ss_pred             ccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCc-hHHHHhhhhhhhccccccc--cC
Confidence            3344444444443  34555666666666666666666666666666666666664 4556666777777777651  12


Q ss_pred             ccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCC
Q psy8551         110 VCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG  187 (581)
Q Consensus       110 ~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~  187 (581)
                      +.++..+.++.  .+.+|.+...+++.+. |+.|++||...|.+..+|+ .++.+.+|.-|++..|++...+  .|.+|.
T Consensus       153 p~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~-~lg~l~~L~~LyL~~Nki~~lP--ef~gcs  228 (565)
T KOG0472|consen  153 PEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPP-ELGGLESLELLYLRRNKIRFLP--EFPGCS  228 (565)
T ss_pred             chHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCCh-hhcchhhhHHHHhhhcccccCC--CCCccH
Confidence            23344444444  5667777777777665 7888888888888877776 6777888888888888877776  477888


Q ss_pred             CCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeec
Q psy8551         188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT  267 (581)
Q Consensus       188 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  267 (581)
                      .|+.+.++.|.+..++......++++..||+++|++++.|. .+..+.+|.+||+++|.++..+.. ++++ .|+.|.+.
T Consensus       229 ~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd-e~clLrsL~rLDlSNN~is~Lp~s-Lgnl-hL~~L~le  305 (565)
T KOG0472|consen  229 LLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD-EICLLRSLERLDLSNNDISSLPYS-LGNL-HLKFLALE  305 (565)
T ss_pred             HHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCch-HHHHhhhhhhhcccCCccccCCcc-cccc-eeeehhhc
Confidence            88888888887777776666677888888888888888884 355677788888888888776654 6777 77888777


Q ss_pred             CCCCceeecCccCCCC-----CCCCE------EeCCCC--CCccccccc---cccCCCCCcEEecCCCCCccccccccCC
Q psy8551         268 GASNLTRVRKGAFADN-----LNLET------LTLNKN--PKLKTIEEG---ALVGLPNLYHLNLKENAFTSFSESMLAW  331 (581)
Q Consensus       268 ~~~~~~~~~~~~~~~~-----~~L~~------L~l~~~--~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~  331 (581)
                      ||+ +..+....+..-     +.|+.      +.-+..  ....+.+..   ....+.+.+.|++++-+++.+|+.++.-
T Consensus       306 GNP-lrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea  384 (565)
T KOG0472|consen  306 GNP-LRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEA  384 (565)
T ss_pred             CCc-hHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHH
Confidence            764 111111111000     00000      000000  000011111   1223456777888888888887755543


Q ss_pred             CC---cceEEccCCCCccCCc-hhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCC
Q psy8551         332 PE---LRTIDIAENPIECGCN-ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL  407 (581)
Q Consensus       332 ~~---L~~L~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L  407 (581)
                      ..   .+.++++.|++.-... +.-+..+....                          ..++ .........+..++.|
T Consensus       385 ~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l--------------------------~lsn-n~isfv~~~l~~l~kL  437 (565)
T KOG0472|consen  385 AKSEIVTSVNFSKNQLCELPKRLVELKELVTDL--------------------------VLSN-NKISFVPLELSQLQKL  437 (565)
T ss_pred             hhhcceEEEecccchHhhhhhhhHHHHHHHHHH--------------------------Hhhc-CccccchHHHHhhhcc
Confidence            33   6777788776531110 00011100000                          0000 0111222345568899


Q ss_pred             CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551         408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  487 (581)
Q Consensus       408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~  487 (581)
                      ..|++++|-+-++| ..++.+..|+.|++++|.+...+ .+...+..++.+- ..++++..+.+..+.++.+|.+||+.+
T Consensus       438 t~L~L~NN~Ln~LP-~e~~~lv~Lq~LnlS~NrFr~lP-~~~y~lq~lEtll-as~nqi~~vd~~~l~nm~nL~tLDL~n  514 (565)
T KOG0472|consen  438 TFLDLSNNLLNDLP-EEMGSLVRLQTLNLSFNRFRMLP-ECLYELQTLETLL-ASNNQIGSVDPSGLKNMRNLTTLDLQN  514 (565)
T ss_pred             eeeecccchhhhcc-hhhhhhhhhheecccccccccch-HHHhhHHHHHHHH-hccccccccChHHhhhhhhcceeccCC
Confidence            99999999888888 45777888999999999887664 3444444444444 445799999988899999999999999


Q ss_pred             CCCceeecCCccCCCCCccEEEcCCCcceeeccccc
Q psy8551         488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML  523 (581)
Q Consensus       488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~  523 (581)
                      | .+..+|+ .+++|.+|++|++.+|.|..-+..+.
T Consensus       515 N-dlq~IPp-~LgnmtnL~hLeL~gNpfr~Pr~~iL  548 (565)
T KOG0472|consen  515 N-DLQQIPP-ILGNMTNLRHLELDGNPFRQPRHQIL  548 (565)
T ss_pred             C-chhhCCh-hhccccceeEEEecCCccCCCHHHHh
Confidence            9 8999975 48999999999999999995444443

>KOG4237|consensus

Probab=99.96  E-value=2.4e-31  Score=243.41  Aligned_cols=344  Identities=29%  Similarity=0.517  Sum_probs=262.3

Q ss_pred             EcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCc
Q psy8551         193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL  272 (581)
Q Consensus       193 ~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  272 (581)
                      +-++-+++.++. .+  .+.-..+.|..|+|+.+|+++|+.+++|+.|+++.|.|+.+.+..|.+++.+..|.+.+++.+
T Consensus        52 dCr~~GL~eVP~-~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI  128 (498)
T KOG4237|consen   52 DCRGKGLTEVPA-NL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKI  128 (498)
T ss_pred             EccCCCcccCcc-cC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCch
Confidence            334444555543 12  246778999999999999999999999999999999999999999999999999999998899


Q ss_pred             eeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchh
Q psy8551         273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNIL  351 (581)
Q Consensus       273 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~  351 (581)
                      ++++...|.++.+++.|.+..| .+.-+....|..++++..|.+.+|.+..++. .+..+..++.+.+..|++.|+|...
T Consensus       129 ~~l~k~~F~gL~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~  207 (498)
T KOG4237|consen  129 TDLPKGAFGGLSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLP  207 (498)
T ss_pred             hhhhhhHhhhHHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccc
Confidence            9999999999999999999888 6888888889999999999999999998887 7778899999999999999999999


Q ss_pred             hHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcC-CCC
Q psy8551         352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK-LTR  430 (581)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~  430 (581)
                      |+........+                                     .+++.+...-..+.+..+..+..+.|.. ..+
T Consensus       208 wla~~~a~~~i-------------------------------------etsgarc~~p~rl~~~Ri~q~~a~kf~c~~es  250 (498)
T KOG4237|consen  208 WLADDLAMNPI-------------------------------------ETSGARCVSPYRLYYKRINQEDARKFLCSLES  250 (498)
T ss_pred             hhhhHHhhchh-------------------------------------hcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence            98765432211                                     1222222222223333333222222211 111


Q ss_pred             CcEeecCCC-cceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEE
Q psy8551         431 LEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN  509 (581)
Q Consensus       431 L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~  509 (581)
                      +.+=-.+.+ .....+..+|..++.|++|++++ +.++.+...+|.+...+++|.+..| .+..+....|.++..|+.|+
T Consensus       251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             HHHhhccccCcCCcChHHHHhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeee
Confidence            111011112 12223344566777777777766 5777777777888888888888888 88888888899999999999


Q ss_pred             cCCCcceee-ccccccCCcceEEecCCCcccccCchhHHHHHHhhcC-CCceeeCCCcccccccccccCccc
Q psy8551         510 LKENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN-TSAVFCNSPAPLKYKSLISLSAED  579 (581)
Q Consensus       510 l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~~-~~~~~c~~~~~~~~~~~~~~~~~~  579 (581)
                      +++|+|+.+ |..+....+|.+|++-+|||.|+|.+.|+.+|++... ....+|++|.++++.++.|++-.|
T Consensus       329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~  400 (498)
T KOG4237|consen  329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGD  400 (498)
T ss_pred             ecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccc
Confidence            999999976 4566678999999999999999999999999998864 445589999999999999987543

>KOG0444|consensus

Probab=99.95  E-value=5.9e-31  Score=253.92  Aligned_cols=364  Identities=23%  Similarity=0.369  Sum_probs=235.2

Q ss_pred             CcCccEEEcccCCcc--cccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccc
Q psy8551          44 NPSIQRLVLSTNRIK--TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEI  121 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~--~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  121 (581)
                      .|-++-+|+++|.+.  .+|..+..+++++-|.|...++..+| +.+.++.+|++|.+++|++                 
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vP-eEL~~lqkLEHLs~~HN~L-----------------   67 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVP-EELSRLQKLEHLSMAHNQL-----------------   67 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhCh-HHHHHHhhhhhhhhhhhhh-----------------
Confidence            355667777777776  56777777777777777777777777 3577777777777777753                 


Q ss_pred             cCcccccccchhhcCCCCCCcEEeCCCCcCc--ccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCc
Q psy8551         122 FGQNRISRIDQACFEGLTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL  199 (581)
Q Consensus       122 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l  199 (581)
                            ..+ ...+..++.|+.+.+.+|++.  ++|.+ +-.+..|..|+|+.|++...+. .+..-+++-.|+|++|++
T Consensus        68 ------~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~d-iF~l~dLt~lDLShNqL~EvP~-~LE~AKn~iVLNLS~N~I  138 (1255)
T KOG0444|consen   68 ------ISV-HGELSDLPRLRSVIVRDNNLKNSGIPTD-IFRLKDLTILDLSHNQLREVPT-NLEYAKNSIVLNLSYNNI  138 (1255)
T ss_pred             ------Hhh-hhhhccchhhHHHhhhccccccCCCCch-hcccccceeeecchhhhhhcch-hhhhhcCcEEEEcccCcc
Confidence                  111 112556677777777777654  45553 3356777777777777766654 355556677777777777


Q ss_pred             cccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCcc
Q psy8551         200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA  279 (581)
Q Consensus       200 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  279 (581)
                      ..++...|.++..|-+|+|++|++..+|+ .+..+.+|++|++++|.+.......++.+++|                  
T Consensus       139 etIPn~lfinLtDLLfLDLS~NrLe~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL------------------  199 (1255)
T KOG0444|consen  139 ETIPNSLFINLTDLLFLDLSNNRLEMLPP-QIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSL------------------  199 (1255)
T ss_pred             ccCCchHHHhhHhHhhhccccchhhhcCH-HHHHHhhhhhhhcCCChhhHHHHhcCccchhh------------------
Confidence            77777667777777788888888888875 46777888888888887664433333333333                  


Q ss_pred             CCCCCCCCEEeCCCCCCc-cccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHh
Q psy8551         280 FADNLNLETLTLNKNPKL-KTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV  358 (581)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  358 (581)
                             +.|.+++.... ..+|. .+..+.+|..++++.|.+..+|+.+..+++|+.|++++|.+.-.           
T Consensus       200 -------~vLhms~TqRTl~N~Pt-sld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL-----------  260 (1255)
T KOG0444|consen  200 -------SVLHMSNTQRTLDNIPT-SLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL-----------  260 (1255)
T ss_pred             -------hhhhcccccchhhcCCC-chhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee-----------
Confidence                   33444433222 23333 57778888888888888888888888877777777777765310           


Q ss_pred             hcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCC
Q psy8551         359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ  438 (581)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  438 (581)
                                                            . .......+|++|++++|+++.+| .++..++.|+.|...+
T Consensus       261 --------------------------------------~-~~~~~W~~lEtLNlSrNQLt~LP-~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  261 --------------------------------------N-MTEGEWENLETLNLSRNQLTVLP-DAVCKLTKLTKLYANN  300 (1255)
T ss_pred             --------------------------------------e-ccHHHHhhhhhhccccchhccch-HHHhhhHHHHHHHhcc
Confidence                                                  0 00111355666677777666655 4566666666666655


Q ss_pred             CcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee
Q psy8551         439 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF  518 (581)
Q Consensus       439 ~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l  518 (581)
                      |+++-                        .-.+..++.+.+|+.+..++| .++-+ |+++..|+.|+.|.++.|++..+
T Consensus       301 NkL~F------------------------eGiPSGIGKL~~Levf~aanN-~LElV-PEglcRC~kL~kL~L~~NrLiTL  354 (1255)
T KOG0444|consen  301 NKLTF------------------------EGIPSGIGKLIQLEVFHAANN-KLELV-PEGLCRCVKLQKLKLDHNRLITL  354 (1255)
T ss_pred             Ccccc------------------------cCCccchhhhhhhHHHHhhcc-ccccC-chhhhhhHHHHHhcccccceeec
Confidence            55441                        112334555556666666666 55555 35566677777777777777777


Q ss_pred             ccccccCCcceEEecCCCcc
Q psy8551         519 SESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       519 ~~~~~~~~~L~~L~l~~np~  538 (581)
                      |+.+.-++.|..||+..||-
T Consensus       355 PeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  355 PEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             hhhhhhcCCcceeeccCCcC
Confidence            77666667777777776665

>KOG0618|consensus

Probab=99.94  E-value=5.8e-29  Score=250.91  Aligned_cols=457  Identities=23%  Similarity=0.283  Sum_probs=288.5

Q ss_pred             ccCCCccCCCCCC--cCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcc
Q psy8551          32 QEANLDVIPSHSN--PSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQ  108 (581)
Q Consensus        32 ~~~~l~~ip~~~~--~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~  108 (581)
                      ++-.++-||..+.  ..+..|+++.|-+-..|- .+.+.-+|+.||+++|.+...|. .+..+++|+.|+++.|.+-  .
T Consensus         6 s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~-~it~l~~L~~ln~s~n~i~--~   82 (1081)
T KOG0618|consen    6 SDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPI-QITLLSHLRQLNLSRNYIR--S   82 (1081)
T ss_pred             ccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCc-hhhhHHHHhhcccchhhHh--h
Confidence            4467778888765  358888888887776553 44556669999999999888884 5777889999999998761  1


Q ss_pred             cccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCC-------------
Q psy8551         109 IVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-------------  173 (581)
Q Consensus       109 ~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n-------------  173 (581)
                      ++.++.....|+  .|.+|.++..+ ..+..+.+|++|+++.|.+..+|. .+..+..+..+..++|             
T Consensus        83 vp~s~~~~~~l~~lnL~~n~l~~lP-~~~~~lknl~~LdlS~N~f~~~Pl-~i~~lt~~~~~~~s~N~~~~~lg~~~ik~  160 (1081)
T KOG0618|consen   83 VPSSCSNMRNLQYLNLKNNRLQSLP-ASISELKNLQYLDLSFNHFGPIPL-VIEVLTAEEELAASNNEKIQRLGQTSIKK  160 (1081)
T ss_pred             CchhhhhhhcchhheeccchhhcCc-hhHHhhhcccccccchhccCCCch-hHHhhhHHHHHhhhcchhhhhhccccchh
Confidence            113444455666  44555555544 346777777777777777777665 4444555555555555             


Q ss_pred             ------cceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc
Q psy8551         174 ------VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF  247 (581)
Q Consensus       174 ------~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~  247 (581)
                            .+.+-....+..+++  .|++++|.+. .  ..+..+++|+.|....|+++.+..    .-++++.|....|.+
T Consensus       161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l  231 (1081)
T KOG0618|consen  161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPL  231 (1081)
T ss_pred             hhhhhhhcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcc
Confidence                  111111111111222  2444444443 1  123334444444444444443321    124555555555555


Q ss_pred             cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccccc
Q psy8551         248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSES  327 (581)
Q Consensus       248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~  327 (581)
                      +....  -+.-.+|+.++++.+ .+..++ .++..+.+|+.+....| .+..++. .+....+|+.+++..|.+..+|+.
T Consensus       232 ~~~~~--~p~p~nl~~~dis~n-~l~~lp-~wi~~~~nle~l~~n~N-~l~~lp~-ri~~~~~L~~l~~~~nel~yip~~  305 (1081)
T KOG0618|consen  232 TTLDV--HPVPLNLQYLDISHN-NLSNLP-EWIGACANLEALNANHN-RLVALPL-RISRITSLVSLSAAYNELEYIPPF  305 (1081)
T ss_pred             eeecc--ccccccceeeecchh-hhhcch-HHHHhcccceEecccch-hHHhhHH-HHhhhhhHHHHHhhhhhhhhCCCc
Confidence            52222  122245677777664 444555 66777777888877777 4555655 355667778888888888888887


Q ss_pred             ccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCC
Q psy8551         328 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL  407 (581)
Q Consensus       328 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L  407 (581)
                      ..+.++|+.|++..|.+..... ..+.......                       ..+..+...+...+...-...+.|
T Consensus       306 le~~~sL~tLdL~~N~L~~lp~-~~l~v~~~~l-----------------------~~ln~s~n~l~~lp~~~e~~~~~L  361 (1081)
T KOG0618|consen  306 LEGLKSLRTLDLQSNNLPSLPD-NFLAVLNASL-----------------------NTLNVSSNKLSTLPSYEENNHAAL  361 (1081)
T ss_pred             ccccceeeeeeehhccccccch-HHHhhhhHHH-----------------------HHHhhhhccccccccccchhhHHH
Confidence            7778889999998888764333 1111100000                       001111111111111111125668


Q ss_pred             CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551         408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  487 (581)
Q Consensus       408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~  487 (581)
                      +.|.+.+|.+++.....+-.+..|+.|++++|++...+...+.++..|++|+++| +.++.++ ..+.++..|++|...+
T Consensus       362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp-~tva~~~~L~tL~ahs  439 (1081)
T KOG0618|consen  362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLP-DTVANLGRLHTLRAHS  439 (1081)
T ss_pred             HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhh-HHHHhhhhhHHHhhcC
Confidence            8888888888876555677888888888888888888888888888888888888 5777775 6677888899998888


Q ss_pred             CCCceeecCCccCCCCCccEEEcCCCccee--eccccccCCcceEEecCCCcc
Q psy8551         488 NPKLKIIEEDALVGLPNLYHLNLKENAFTS--FSESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~l~~np~  538 (581)
                      | ++...|  .+..++.|+.+|++.|.|+.  +++. ...+.|++||++||++
T Consensus       440 N-~l~~fP--e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  440 N-QLLSFP--ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             C-ceeech--hhhhcCcceEEecccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence            8 788776  37888999999999998884  3433 3348899999999986

>KOG0444|consensus

Probab=99.93  E-value=1.4e-28  Score=237.57  Aligned_cols=350  Identities=21%  Similarity=0.355  Sum_probs=267.9

Q ss_pred             cCCCCCC--cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCC
Q psy8551          38 VIPSHSN--PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIIS  115 (581)
Q Consensus        38 ~ip~~~~--~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~  115 (581)
                      ..|.++.  ..++.|.|..+++.++|+.++.+.+|++|.+++|++.++- ..+..++.|+.+++..|++...+++..+..
T Consensus        23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs~Lp~LRsv~~R~N~LKnsGiP~diF~  101 (1255)
T KOG0444|consen   23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELSDLPRLRSVIVRDNNLKNSGIPTDIFR  101 (1255)
T ss_pred             cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhccchhhHHHhhhccccccCCCCchhcc
Confidence            4455443  7899999999999999999999999999999999998887 468899999999999999877777778877


Q ss_pred             ccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEE
Q psy8551         116 PRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD  193 (581)
Q Consensus       116 ~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  193 (581)
                      +..|+  +|+.|++.+.+.. +...+++-.|++++|+|..+|...|.++..|-.|+|++|.+...++. +..+..|++|+
T Consensus       102 l~dLt~lDLShNqL~EvP~~-LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ-~RRL~~LqtL~  179 (1255)
T KOG0444|consen  102 LKDLTILDLSHNQLREVPTN-LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQ-IRRLSMLQTLK  179 (1255)
T ss_pred             cccceeeecchhhhhhcchh-hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHH-HHHHhhhhhhh
Confidence            77777  7888888887654 77788888899999999988888888888888899999888888774 67788888889


Q ss_pred             cCCCCccccCccccCCCCCCcEEECCCCcCC--ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCC
Q psy8551         194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ--SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN  271 (581)
Q Consensus       194 L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (581)
                      |++|.+.......+..+.+|+.|.+++++-+  .+| ..+..+.+|..++++.|.+..++. .+..+++|+.|++++| .
T Consensus       180 Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~P-tsld~l~NL~dvDlS~N~Lp~vPe-cly~l~~LrrLNLS~N-~  256 (1255)
T KOG0444|consen  180 LSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIP-TSLDDLHNLRDVDLSENNLPIVPE-CLYKLRNLRRLNLSGN-K  256 (1255)
T ss_pred             cCCChhhHHHHhcCccchhhhhhhcccccchhhcCC-CchhhhhhhhhccccccCCCcchH-HHhhhhhhheeccCcC-c
Confidence            9888877655555666777888888887654  555 467778888888888888776654 4667788888888875 3


Q ss_pred             ceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc--cccccccCCCCcceEEccCCCCccCCc
Q psy8551         272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT--SFSESMLAWPELRTIDIAENPIECGCN  349 (581)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~  349 (581)
                      ++..... ...-.+|++|++++| .++.+|. ++..++.|++|.+.+|+++  ++|+.++.+..|+.+...+|.+.    
T Consensus       257 iteL~~~-~~~W~~lEtLNlSrN-QLt~LP~-avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE----  329 (1255)
T KOG0444|consen  257 ITELNMT-EGEWENLETLNLSRN-QLTVLPD-AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE----  329 (1255)
T ss_pred             eeeeecc-HHHHhhhhhhccccc-hhccchH-HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc----
Confidence            3333221 122246777777777 5666665 5667777777777777655  67777777777777777766543    


Q ss_pred             hhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCC
Q psy8551         350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT  429 (581)
Q Consensus       350 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~  429 (581)
                                                                    +-+..+..|..|++|.+++|.+..+| +.+--++
T Consensus       330 ----------------------------------------------lVPEglcRC~kL~kL~L~~NrLiTLP-eaIHlL~  362 (1255)
T KOG0444|consen  330 ----------------------------------------------LVPEGLCRCVKLQKLKLDHNRLITLP-EAIHLLP  362 (1255)
T ss_pred             ----------------------------------------------cCchhhhhhHHHHHhcccccceeech-hhhhhcC
Confidence                                                          23445667888999999999888776 6777888


Q ss_pred             CCcEeecCCCcceeeccc
Q psy8551         430 RLEELEIGQNGFSMLEAG  447 (581)
Q Consensus       430 ~L~~L~l~~~~i~~~~~~  447 (581)
                      .|+.|++..|.-..++|.
T Consensus       363 ~l~vLDlreNpnLVMPPK  380 (1255)
T KOG0444|consen  363 DLKVLDLRENPNLVMPPK  380 (1255)
T ss_pred             CcceeeccCCcCccCCCC
Confidence            899999988754444443

>KOG0618|consensus

Probab=99.92  E-value=3.9e-27  Score=237.85  Aligned_cols=437  Identities=23%  Similarity=0.276  Sum_probs=268.6

Q ss_pred             ccCCCccCCCCCC--cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCccc
Q psy8551          32 QEANLDVIPSHSN--PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQI  109 (581)
Q Consensus        32 ~~~~l~~ip~~~~--~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  109 (581)
                      +++.+...|..+.  ++|+.|+++.|.|..+|....++.+|+++.|.+|.+..+|. .+..+++|++|++++|.+.+...
T Consensus        53 snn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~-~~~~lknl~~LdlS~N~f~~~Pl  131 (1081)
T KOG0618|consen   53 SNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPA-SISELKNLQYLDLSFNHFGPIPL  131 (1081)
T ss_pred             cccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCch-hHHhhhcccccccchhccCCCch
Confidence            6677777766554  67888888888888888777788888888888887777773 57777788888888777622211


Q ss_pred             ccccCCc-----------------cccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551         110 VCSIISP-----------------RRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  170 (581)
Q Consensus       110 ~~~~~~~-----------------~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L  170 (581)
                      .-.....                 ..++  ++..|.+..........+..  .|++..|.+...   .+..+.+|+.|..
T Consensus       132 ~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~---dls~~~~l~~l~c  206 (1081)
T KOG0618|consen  132 VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVL---DLSNLANLEVLHC  206 (1081)
T ss_pred             hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhh---hhhhccchhhhhh
Confidence            1000000                 0011  33333333322222222222  366666655511   2444556666666


Q ss_pred             CCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccccc
Q psy8551         171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  250 (581)
Q Consensus       171 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  250 (581)
                      ..|.+..+.-    ..++|+.|+...|.++.....  ....+|++++++.++++.+| +++..+.+|+.++...|.++.+
T Consensus       207 ~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~l  279 (1081)
T KOG0618|consen  207 ERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVAL  279 (1081)
T ss_pred             hhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhh
Confidence            6655554321    335666666666666633321  22346777777777777777 6777777777777777777655


Q ss_pred             CCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCC-CcEEecCCCCCcccccc-c
Q psy8551         251 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN-LYHLNLKENAFTSFSES-M  328 (581)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~-~  328 (581)
                      +.. .....+|+.+.+..| .+..+++ ...+.++|++|++..| .+...|...+.-... +..++.+.+.+...|.. -
T Consensus       280 p~r-i~~~~~L~~l~~~~n-el~yip~-~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e  355 (1081)
T KOG0618|consen  280 PLR-ISRITSLVSLSAAYN-ELEYIPP-FLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE  355 (1081)
T ss_pred             HHH-HhhhhhHHHHHhhhh-hhhhCCC-cccccceeeeeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence            544 233455555555443 2333333 1233455666666665 455555433333332 44555555555444421 1


Q ss_pred             cCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCC
Q psy8551         329 LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR  408 (581)
Q Consensus       329 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~  408 (581)
                      ...+.|+.|.+.+|.+.                                                 +-....+.++++|+
T Consensus       356 ~~~~~Lq~LylanN~Lt-------------------------------------------------d~c~p~l~~~~hLK  386 (1081)
T KOG0618|consen  356 NNHAALQELYLANNHLT-------------------------------------------------DSCFPVLVNFKHLK  386 (1081)
T ss_pred             hhhHHHHHHHHhcCccc-------------------------------------------------ccchhhhcccccee
Confidence            12345555555555543                                                 22233456789999


Q ss_pred             EEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCC
Q psy8551         409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN  488 (581)
Q Consensus       409 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~  488 (581)
                      .|+|++|.+.+++...+.+++.|++|++++|+++.++ .....+..|+.|...+ +.+...+  .+..++.|+.+|++.|
T Consensus       387 VLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~tva~~~~L~tL~ahs-N~l~~fP--e~~~l~qL~~lDlS~N  462 (1081)
T KOG0618|consen  387 VLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DTVANLGRLHTLRAHS-NQLLSFP--ELAQLPQLKVLDLSCN  462 (1081)
T ss_pred             eeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HHHHhhhhhHHHhhcC-Cceeech--hhhhcCcceEEecccc
Confidence            9999999999999999999999999999999999886 6678899999999877 5666665  6888999999999999


Q ss_pred             CCceeecCCccCCCCCccEEEcCCCcceeec-cccccCCcceEEecCCCccc
Q psy8551         489 PKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIE  539 (581)
Q Consensus       489 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~~~~L~~L~l~~np~~  539 (581)
                       .++.+....-..-++|++||+++|.=..+. ..+..+..+...++.-++..
T Consensus       463 -~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~~  513 (1081)
T KOG0618|consen  463 -NLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNTP  513 (1081)
T ss_pred             -hhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCCC
Confidence             665543222222279999999999733222 34555666666666655443

>PLN03210 Resistant to P

Probab=99.89  E-value=2.6e-21  Score=217.92  Aligned_cols=346  Identities=23%  Similarity=0.325  Sum_probs=244.0

Q ss_pred             cchhhcCCCCCCcEEeCCCCcCc-------ccCCcccccC-ccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccc
Q psy8551         130 IDQACFEGLTALRILYLDDNQLR-------SVPTPSFIYL-GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  201 (581)
Q Consensus       130 ~~~~~l~~~~~L~~L~l~~~~i~-------~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~  201 (581)
                      +...+|.+|++|+.|.+..+...       .++. .+..+ .+|+.|.+.++.+..++.. + ...+|+.|++.++.+..
T Consensus       549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~-~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~  625 (1153)
T PLN03210        549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPE-GFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEK  625 (1153)
T ss_pred             ecHHHHhcCccccEEEEecccccccccceeecCc-chhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccc
Confidence            45667888899999888655322       1222 34443 4688888888887777653 3 46788888888888776


Q ss_pred             cCccccCCCCCCcEEECCCCc-CCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccC
Q psy8551         202 ISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF  280 (581)
Q Consensus       202 ~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  280 (581)
                      +.. .+..+++|+.|+++++. +..+|  .+..+++|++|++++|......+..+..+++|+.|++.+|..+..++... 
T Consensus       626 L~~-~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-  701 (1153)
T PLN03210        626 LWD-GVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-  701 (1153)
T ss_pred             ccc-ccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence            543 45678888899988764 55555  37778888889888875444444557788888888888888777776543 


Q ss_pred             CCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhc
Q psy8551         281 ADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR  360 (581)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~  360 (581)
                       ++++|+.|++++|..+..++.    ...+|+.|++.++.+..+|..+ .+++|++|.+.++.....    |        
T Consensus       702 -~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l----~--------  763 (1153)
T PLN03210        702 -NLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKL----W--------  763 (1153)
T ss_pred             -CCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccc-cccccccccccccchhhc----c--------
Confidence             577888888888866665553    2357888888888888777654 467777777765431100    0        


Q ss_pred             CCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCc
Q psy8551         361 NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~  440 (581)
                                                    ..+..+....+...++|+.|++++|......|..+..+++|+.|++++|.
T Consensus       764 ------------------------------~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~  813 (1153)
T PLN03210        764 ------------------------------ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCI  813 (1153)
T ss_pred             ------------------------------ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCC
Confidence                                          00000111112235789999999986554445678899999999998874


Q ss_pred             -ceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCc-ceee
Q psy8551         441 -FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA-FTSF  518 (581)
Q Consensus       441 -i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~l  518 (581)
                       +..+ |... .+++|+.|++++|..+..++.    ...+|+.|++++| .++.+| .++..+++|+.|++++|+ ++.+
T Consensus       814 ~L~~L-P~~~-~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n-~i~~iP-~si~~l~~L~~L~L~~C~~L~~l  885 (1153)
T PLN03210        814 NLETL-PTGI-NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRT-GIEEVP-WWIEKFSNLSFLDMNGCNNLQRV  885 (1153)
T ss_pred             CcCee-CCCC-CccccCEEECCCCCccccccc----cccccCEeECCCC-CCccCh-HHHhcCCCCCEEECCCCCCcCcc
Confidence             4444 3333 688999999999887765532    2358999999998 777775 568889999999999875 8888


Q ss_pred             ccccccCCcceEEecCCCcc
Q psy8551         519 SESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       519 ~~~~~~~~~L~~L~l~~np~  538 (581)
                      |..+..+++|+.+++++|+-
T Consensus       886 ~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        886 SLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             CcccccccCCCeeecCCCcc
Confidence            88788888888889888864

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.84  E-value=2.2e-19  Score=202.55  Aligned_cols=316  Identities=20%  Similarity=0.261  Sum_probs=214.4

Q ss_pred             CCcccccCccCcEEECCCCcc------eeccCCcCCCC-CCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccC
Q psy8551         155 PTPSFIYLGMLAELRVGLNVF------TTLADGAFNGL-GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP  227 (581)
Q Consensus       155 ~~~~~~~~~~L~~L~L~~n~~------~~~~~~~l~~l-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~  227 (581)
                      ...+|.++.+|+.|.+..+..      ....+..+..+ .+|+.|.+.++.+..++.. + ...+|+.|++.++++..++
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~-f-~~~~L~~L~L~~s~l~~L~  627 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSN-F-RPENLVKLQMQGSKLEKLW  627 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCc-C-CccCCcEEECcCccccccc
Confidence            344577777888877755432      11122234443 3577777777776666542 3 3567777888777777666


Q ss_pred             ccccCCCCCCCEEECCCCc-ccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccccccccc
Q psy8551         228 TKQLSKLTRLEELEIGQNG-FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALV  306 (581)
Q Consensus       228 ~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  306 (581)
                       ..+..+++|+.++++++. +..++  .+..+++|+.|++.+|..+..++. .+..+++|+.|++++|..++.+|.. + 
T Consensus       628 -~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~-si~~L~~L~~L~L~~c~~L~~Lp~~-i-  701 (1153)
T PLN03210        628 -DGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPS-SIQYLNKLEDLDMSRCENLEILPTG-I-  701 (1153)
T ss_pred             -cccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccch-hhhccCCCCEEeCCCCCCcCccCCc-C-
Confidence             345667777777777654 33333  255667777777777766655543 3566677777777777666666653 2 


Q ss_pred             CCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccc
Q psy8551         307 GLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED  385 (581)
Q Consensus       307 ~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  385 (581)
                      .+++|+.|++++|... .+|..   ..+|++|+++++.+.                                        
T Consensus       702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~----------------------------------------  738 (1153)
T PLN03210        702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE----------------------------------------  738 (1153)
T ss_pred             CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc----------------------------------------
Confidence            5677777777776432 33321   346677777766542                                        


Q ss_pred             cccCCCCccccCccccCCCCCCCEEEcCCCcC-------CccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEE
Q psy8551         386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRL-------QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL  458 (581)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l-------~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  458 (581)
                               .++.. + .+++|++|.+.++..       ..+.+......++|++|++++|......|..+..+++|+.|
T Consensus       739 ---------~lP~~-~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L  807 (1153)
T PLN03210        739 ---------EFPSN-L-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHL  807 (1153)
T ss_pred             ---------ccccc-c-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEE
Confidence                     11111 1 256677777765322       12222233446789999999997776677789999999999


Q ss_pred             eecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcc
Q psy8551         459 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       459 ~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~  538 (581)
                      ++++|+.+..++...  ++++|+.|++++|..+..++.    ..++|++|++++|.++.+|.++..+++|++|++++|+-
T Consensus       808 ~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~----~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~  881 (1153)
T PLN03210        808 EIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD----ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN  881 (1153)
T ss_pred             ECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc----cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCC
Confidence            999999998876543  689999999999988887753    24689999999999999999999999999999999643

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.82  E-value=1.6e-19  Score=188.84  Aligned_cols=265  Identities=25%  Similarity=0.288  Sum_probs=193.5

Q ss_pred             CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCccc
Q psy8551          16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV   95 (581)
Q Consensus        16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~   95 (581)
                      .+.|.......+.|  ++..++++|..++++++.|++.+|+++.+|.   ..++|++|++++|+++.+|..    .++|+
T Consensus       195 ~~~Cl~~~~~~LdL--s~~~LtsLP~~l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l----p~sL~  265 (788)
T PRK15387        195 MRACLNNGNAVLNV--GESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL----PPGLL  265 (788)
T ss_pred             HHHHhcCCCcEEEc--CCCCCCcCCcchhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc----ccccc
Confidence            34454434455677  8899999999999999999999999999986   358999999999999988742    36899


Q ss_pred             EEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcc
Q psy8551          96 ELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF  175 (581)
Q Consensus        96 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~  175 (581)
                      +|++++|.+                       +.++.    ...+|+.|++++|+++.++.    .+++|+.|++++|.+
T Consensus       266 ~L~Ls~N~L-----------------------~~Lp~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L  314 (788)
T PRK15387        266 ELSIFSNPL-----------------------THLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQL  314 (788)
T ss_pred             eeeccCCch-----------------------hhhhh----chhhcCEEECcCCccccccc----cccccceeECCCCcc
Confidence            999999864                       22211    12457778888888877764    246788888888877


Q ss_pred             eeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCccc
Q psy8551         176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF  255 (581)
Q Consensus       176 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  255 (581)
                      ..++.    ....|+.|++.+|.++.++.  +  ..+|+.|++++|+++.+|..    .++|+.|++++|.+..++..  
T Consensus       315 ~~Lp~----lp~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l--  380 (788)
T PRK15387        315 ASLPA----LPSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL--  380 (788)
T ss_pred             ccCCC----CcccccccccccCccccccc--c--ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc--
Confidence            76643    12357777788887776542  1  24688888888888877641    24677788888877765432  


Q ss_pred             CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcc
Q psy8551         256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR  335 (581)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  335 (581)
                        ...|+.|++++| .+..++..    ..+|+.|++++| .+..+|..    ..+|+.|++++|+++.+|..+..++.|+
T Consensus       381 --~~~L~~LdLs~N-~Lt~LP~l----~s~L~~LdLS~N-~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~  448 (788)
T PRK15387        381 --PSGLKELIVSGN-RLTSLPVL----PSELKELMVSGN-RLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSET  448 (788)
T ss_pred             --ccccceEEecCC-cccCCCCc----ccCCCEEEccCC-cCCCCCcc----hhhhhhhhhccCcccccChHHhhccCCC
Confidence              246788888775 34444331    257889999998 57777642    3468889999999999999888999999


Q ss_pred             eEEccCCCCcc
Q psy8551         336 TIDIAENPIEC  346 (581)
Q Consensus       336 ~L~l~~~~~~~  346 (581)
                      .+++++|++.+
T Consensus       449 ~LdLs~N~Ls~  459 (788)
T PRK15387        449 TVNLEGNPLSE  459 (788)
T ss_pred             eEECCCCCCCc
Confidence            99999999874

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.78  E-value=2.5e-18  Score=179.95  Aligned_cols=263  Identities=22%  Similarity=0.241  Sum_probs=163.4

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      ..-..|+|+++.++.+|..+.  ++|+.|++++|+++.+|.    ..++|++|++++|.+                    
T Consensus       201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~L--------------------  254 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL--------------------  254 (788)
T ss_pred             CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCcc--------------------
Confidence            456678888888888887654  478888888888887763    246788888887753                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.++.    ..++|+.|++++|.++.++.    ...+|+.|++++|.++.++.    ..++|+.|++++|+++.++.
T Consensus       255 ---tsLP~----lp~sL~~L~Ls~N~L~~Lp~----lp~~L~~L~Ls~N~Lt~LP~----~p~~L~~LdLS~N~L~~Lp~  319 (788)
T PRK15387        255 ---TSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA  319 (788)
T ss_pred             ---CcccC----cccccceeeccCCchhhhhh----chhhcCEEECcCCccccccc----cccccceeECCCCccccCCC
Confidence               22221    13567788888887776654    13567778888887776653    23567778887777776543


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  284 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (581)
                        +  ..+|+.|.+.+|+++.+|.  +  ..+|++|++++|.++.++..    ..+|+                      
T Consensus       320 --l--p~~L~~L~Ls~N~L~~LP~--l--p~~Lq~LdLS~N~Ls~LP~l----p~~L~----------------------  365 (788)
T PRK15387        320 --L--PSELCKLWAYNNQLTSLPT--L--PSGLQELSVSDNQLASLPTL----PSELY----------------------  365 (788)
T ss_pred             --C--cccccccccccCccccccc--c--ccccceEecCCCccCCCCCC----Ccccc----------------------
Confidence              1  2356777777777776663  1  24677777777776654431    12333                      


Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA  364 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~  364 (581)
                         .|++++| .+..++..    ..+|+.|++++|.++.+|..   .++|+.|++++|.+..                  
T Consensus       366 ---~L~Ls~N-~L~~LP~l----~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~Lss------------------  416 (788)
T PRK15387        366 ---KLWAYNN-RLTSLPAL----PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTS------------------  416 (788)
T ss_pred             ---eehhhcc-ccccCccc----ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCC------------------
Confidence               4444444 33334321    23566777777777666543   2467777777765531                  


Q ss_pred             eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551         365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  444 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  444 (581)
                                                     ++.    ...+|+.|++++|+++.+| ..+..+++|+.|++++|.+++.
T Consensus       417 -------------------------------IP~----l~~~L~~L~Ls~NqLt~LP-~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        417 -------------------------------LPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             -------------------------------CCc----chhhhhhhhhccCcccccC-hHHhhccCCCeEECCCCCCCch
Confidence                                           110    0234666777777777665 4566777777777777777755


Q ss_pred             ccc
Q psy8551         445 EAG  447 (581)
Q Consensus       445 ~~~  447 (581)
                      .+.
T Consensus       461 ~~~  463 (788)
T PRK15387        461 TLQ  463 (788)
T ss_pred             HHH
Confidence            443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.71  E-value=4.1e-17  Score=172.10  Aligned_cols=239  Identities=23%  Similarity=0.356  Sum_probs=134.6

Q ss_pred             ccCCCccCCCCCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCccccc
Q psy8551          32 QEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVC  111 (581)
Q Consensus        32 ~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~  111 (581)
                      .+..++.+|..++++++.|+|++|.++.+|..+.  ++|++|++++|+++.+|.. +  .++|+.|++++|.+       
T Consensus       186 ~~~~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~-l--~~~L~~L~Ls~N~L-------  253 (754)
T PRK15370        186 KILGLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPAT-L--PDTIQEMELSINRI-------  253 (754)
T ss_pred             CCCCcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChh-h--hccccEEECcCCcc-------
Confidence            6666667776666677777777777776665432  4677777777766666532 1  13566666666643       


Q ss_pred             ccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcE
Q psy8551         112 SIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA  191 (581)
Q Consensus       112 ~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  191 (581)
                                      ..++.. +  ..+|+.|++++|+++.+|.. +  ..+|++|++++|.++.++.. +  .++|+.
T Consensus       254 ----------------~~LP~~-l--~s~L~~L~Ls~N~L~~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~-l--p~sL~~  308 (754)
T PRK15370        254 ----------------TELPER-L--PSALQSLDLFHNKISCLPEN-L--PEELRYLSVYDNSIRTLPAH-L--PSGITH  308 (754)
T ss_pred             ----------------CcCChh-H--hCCCCEEECcCCccCccccc-c--CCCCcEEECCCCccccCccc-c--hhhHHH
Confidence                            222111 1  13566666666666655542 2  23566666666666554431 1  134555


Q ss_pred             EEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCC
Q psy8551         192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN  271 (581)
Q Consensus       192 L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (581)
                      |++++|.++.++.. +  .++|+.|++++|.++.+|. .+  .++|+.|++++|.+..++..                  
T Consensus       309 L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~L~~LP~~------------------  364 (754)
T PRK15370        309 LNVQSNSLTALPET-L--PPGLKTLEAGENALTSLPA-SL--PPELQVLDVSKNQITVLPET------------------  364 (754)
T ss_pred             HHhcCCccccCCcc-c--cccceeccccCCccccCCh-hh--cCcccEEECCCCCCCcCChh------------------
Confidence            66666655544321 1  2455666666665555542 12  14555566655554432211                  


Q ss_pred             ceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccc----cCCCCcceEEccCCCCc
Q psy8551         272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM----LAWPELRTIDIAENPIE  345 (581)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~L~~L~l~~~~~~  345 (581)
                              +  .++|+.|++++| .+..+|.. +.  ..|+.|++++|++..+|..+    ...+.+..+++.+|++.
T Consensus       365 --------l--p~~L~~LdLs~N-~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        365 --------L--PPTITTLDVSRN-ALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             --------h--cCCcCEEECCCC-cCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence                    1  135667777776 45555543 21  35778888888887766543    23467788888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.64  E-value=1.6e-15  Score=160.08  Aligned_cols=225  Identities=21%  Similarity=0.342  Sum_probs=115.1

Q ss_pred             CCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccccc
Q psy8551          43 SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF  122 (581)
Q Consensus        43 ~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  122 (581)
                      +..+.+.|+++++.++.+|..+.  ++|+.|++++|+++.+|...+   ++|++|++++|.+                  
T Consensus       176 l~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~---~nL~~L~Ls~N~L------------------  232 (754)
T PRK15370        176 LKNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ---GNIKTLYANSNQL------------------  232 (754)
T ss_pred             cccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc---cCCCEEECCCCcc------------------
Confidence            33556677777777777765442  467777777777776664332   3667777776642                  


Q ss_pred             CcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCcccc
Q psy8551         123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       123 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                           +.++.. +  .++|+.|++++|.+..+|.. +  ..+|+.|++++|.+..++.. +.  ++|+.|++++|+++.+
T Consensus       233 -----tsLP~~-l--~~~L~~L~Ls~N~L~~LP~~-l--~s~L~~L~Ls~N~L~~LP~~-l~--~sL~~L~Ls~N~Lt~L  298 (754)
T PRK15370        233 -----TSIPAT-L--PDTIQEMELSINRITELPER-L--PSALQSLDLFHNKISCLPEN-LP--EELRYLSVYDNSIRTL  298 (754)
T ss_pred             -----ccCChh-h--hccccEEECcCCccCcCChh-H--hCCCCEEECcCCccCccccc-cC--CCCcEEECCCCccccC
Confidence                 222111 1  13566677777666665542 2  23566666666666554331 21  3555555555555543


Q ss_pred             CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551         203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD  282 (581)
Q Consensus       203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  282 (581)
                      +.. +  ..+|+.|++++|+++.+|.. +  .++|+.|++++|.++.++..                          +  
T Consensus       299 P~~-l--p~sL~~L~Ls~N~Lt~LP~~-l--~~sL~~L~Ls~N~Lt~LP~~--------------------------l--  344 (754)
T PRK15370        299 PAH-L--PSGITHLNVQSNSLTALPET-L--PPGLKTLEAGENALTSLPAS--------------------------L--  344 (754)
T ss_pred             ccc-c--hhhHHHHHhcCCccccCCcc-c--cccceeccccCCccccCChh--------------------------h--
Confidence            321 1  12455555555555544421 1  13444445444443322110                          0  


Q ss_pred             CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551         283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI  344 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  344 (581)
                      .++|+.|++++| .+..++.. +  .++|+.|++++|.++.+|+.+.  ..|+.|++++|++
T Consensus       345 ~~sL~~L~Ls~N-~L~~LP~~-l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L  400 (754)
T PRK15370        345 PPELQVLDVSKN-QITVLPET-L--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNL  400 (754)
T ss_pred             cCcccEEECCCC-CCCcCChh-h--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCc
Confidence            134555566555 34444431 1  2456666666666666655432  2455555555544

>KOG0617|consensus

Probab=99.49  E-value=4.7e-16  Score=127.09  Aligned_cols=156  Identities=30%  Similarity=0.437  Sum_probs=121.3

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .+++.|.|+.|+++.+|..+..+.+|+.|++++|+|+.+|. .+..+++|++|+++-|..                    
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~-~issl~klr~lnvgmnrl--------------------   91 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPT-SISSLPKLRILNVGMNRL--------------------   91 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcCh-hhhhchhhhheecchhhh--------------------
Confidence            68999999999999999989999999999999999999985 688899999999987753                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcc--cCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCcccc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRS--VPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                          .+.+..|+.++.|+.||+..|++..  +|. .|-.+..|+.|+|+.|.+.-+++ .++++++|+.|.++.|.+-..
T Consensus        92 ----~~lprgfgs~p~levldltynnl~e~~lpg-nff~m~tlralyl~dndfe~lp~-dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen   92 ----NILPRGFGSFPALEVLDLTYNNLNENSLPG-NFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             ----hcCccccCCCchhhhhhccccccccccCCc-chhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEEeeccCchhhC
Confidence                1235568888999999999888773  343 45567788888888888776665 477777888887777766554


Q ss_pred             CccccCCCCCCcEEECCCCcCCccCc
Q psy8551         203 SDNAFRGLSGLRSLVLTDNRLQSIPT  228 (581)
Q Consensus       203 ~~~~l~~~~~L~~L~l~~n~l~~~~~  228 (581)
                      +. .++.+..|++|.+.+|+++-+|+
T Consensus       166 pk-eig~lt~lrelhiqgnrl~vlpp  190 (264)
T KOG0617|consen  166 PK-EIGDLTRLRELHIQGNRLTVLPP  190 (264)
T ss_pred             cH-HHHHHHHHHHHhcccceeeecCh
Confidence            43 46666777777777777776664

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.48  E-value=3.7e-15  Score=146.37  Aligned_cols=207  Identities=25%  Similarity=0.276  Sum_probs=96.3

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcccccCcc---CcEEECCCCcceec----cCCcCCCC-CCCcEEEcCCCCccccC---
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPSFIYLGM---LAELRVGLNVFTTL----ADGAFNGL-GRLSALDLRGAGLTNIS---  203 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~---L~~L~L~~n~~~~~----~~~~l~~l-~~L~~L~L~~~~l~~~~---  203 (581)
                      +..+++|+.|++++|.+.......+..+.+   |++|++++|.+...    ....+..+ ++|+.|++++|.++...   
T Consensus        77 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          77 LTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             HHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            444555555555555554322223322222   55555555554421    11122333 55566666665554211   


Q ss_pred             -ccccCCCCCCcEEECCCCcCCccC----ccccCCCCCCCEEECCCCcccccCC----cccCCCcccceeeecCCCCcee
Q psy8551         204 -DNAFRGLSGLRSLVLTDNRLQSIP----TKQLSKLTRLEELEIGQNGFSMLEA----GCFKGLSYLKRLEITGASNLTR  274 (581)
Q Consensus       204 -~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~  274 (581)
                       ...+..+++|++|++++|.++...    ...+..+++|++|++++|.+.....    ..+..+++|+.|++++|. +..
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~  235 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN-LTD  235 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc-Cch
Confidence             122334455666666666555211    1123334556666666665542211    123344455555555442 211


Q ss_pred             ecCc-----cCCCCCCCCEEeCCCCCCccccc----cccccCCCCCcEEecCCCCCccc-----cccccCC-CCcceEEc
Q psy8551         275 VRKG-----AFADNLNLETLTLNKNPKLKTIE----EGALVGLPNLYHLNLKENAFTSF-----SESMLAW-PELRTIDI  339 (581)
Q Consensus       275 ~~~~-----~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~-~~L~~L~l  339 (581)
                      ....     .....+.|++|++++| .+++..    ...+..+++|+.+++++|.+...     ...+... +.++++++
T Consensus       236 ~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         236 AGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV  314 (319)
T ss_pred             HHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence            1100     0112356777777776 333111    11344556777777777777632     1222233 56777777


Q ss_pred             cCCC
Q psy8551         340 AENP  343 (581)
Q Consensus       340 ~~~~  343 (581)
                      .+++
T Consensus       315 ~~~~  318 (319)
T cd00116         315 KDDS  318 (319)
T ss_pred             CCCC
Confidence            7664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.43  E-value=1.7e-14  Score=141.60  Aligned_cols=39  Identities=26%  Similarity=0.285  Sum_probs=18.4

Q ss_pred             CCCCEEEcCCCcCCccC----hhhhcCCCCCcEeecCCCccee
Q psy8551         405 SGLRSLVLTDNRLQSIP----TKQLSKLTRLEELEIGQNGFSM  443 (581)
Q Consensus       405 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~~~i~~  443 (581)
                      +.|+.|++++|.++...    ...+..+++|+++++++|.++.
T Consensus       250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            44555555555554211    1233444555555555555553

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.43  E-value=2.8e-15  Score=122.61  Aligned_cols=167  Identities=27%  Similarity=0.379  Sum_probs=135.2

Q ss_pred             ccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCC
Q psy8551          58 KTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG  137 (581)
Q Consensus        58 ~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~  137 (581)
                      .++|. +..+.+.+.|.||+|+++.+++. +..+.+|+.|++++|++                       ++++. .++.
T Consensus        24 ~~~~g-Lf~~s~ITrLtLSHNKl~~vppn-ia~l~nlevln~~nnqi-----------------------e~lp~-~iss   77 (264)
T KOG0617|consen   24 EELPG-LFNMSNITRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQI-----------------------EELPT-SISS   77 (264)
T ss_pred             hhccc-ccchhhhhhhhcccCceeecCCc-HHHhhhhhhhhcccchh-----------------------hhcCh-hhhh
Confidence            34443 34677888899999999999974 78899999999999863                       44433 3778


Q ss_pred             CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcce-eccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551         138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL  216 (581)
Q Consensus       138 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  216 (581)
                      +++|+.|+++-|++...|. .|+.++.|+.|+|.+|++. ...+..|..++.|+.|.++.|.+.-+++ .++++.+|+.|
T Consensus        78 l~klr~lnvgmnrl~~lpr-gfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~-dvg~lt~lqil  155 (264)
T KOG0617|consen   78 LPKLRILNVGMNRLNILPR-GFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPP-DVGKLTNLQIL  155 (264)
T ss_pred             chhhhheecchhhhhcCcc-ccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCCh-hhhhhcceeEE
Confidence            9999999999888887776 8999999999999999887 3445567778889999999988876655 57889999999


Q ss_pred             ECCCCcCCccCccccCCCCCCCEEECCCCcccccCCc
Q psy8551         217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG  253 (581)
Q Consensus       217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  253 (581)
                      .+++|.+-.+| ..++.+..|++|++.+|.++.+++.
T Consensus       156 ~lrdndll~lp-keig~lt~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  156 SLRDNDLLSLP-KEIGDLTRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             eeccCchhhCc-HHHHHHHHHHHHhcccceeeecChh
Confidence            99999888888 4588888999999999988877654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.17  E-value=1.3e-11  Score=106.13  Aligned_cols=116  Identities=23%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             CCccCCCCC-CcCccEEEcccCCccccccccc-CCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccc
Q psy8551          35 NLDVIPSHS-NPSIQRLVLSTNRIKTVDSAIP-IYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCS  112 (581)
Q Consensus        35 ~l~~ip~~~-~~~l~~L~L~~~~i~~l~~~~~-~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  112 (581)
                      .++.+|... +-++++|+|.+++|+.+.. +. .+.+|+.|++++|.|+.+.  .+..+++|++|++++|.+        
T Consensus         8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I--------   76 (175)
T PF14580_consen    8 MIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRI--------   76 (175)
T ss_dssp             ----------------------------S---TT-TT--EEE-TTS--S--T--T----TT--EEE--SS----------
T ss_pred             ccccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCC--------
Confidence            344444433 2356777777777776643 33 4667777777777777665  356666677777776653        


Q ss_pred             cCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcce
Q psy8551         113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       113 ~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~  176 (581)
                                     +.+.......+++|++|++++|+|..+.. ..+..+++|++|++.+|+++
T Consensus        77 ---------------~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   77 ---------------SSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             ----------------S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ---------------CccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence                           33322111245666666666666655432 23445556666666666554

>KOG3207|consensus

Probab=99.15  E-value=8.6e-12  Score=117.49  Aligned_cols=212  Identities=20%  Similarity=0.240  Sum_probs=152.4

Q ss_pred             CCCCCCEEeCCCCCCcccccc-ccccCCCCCcEEecCCCCCccc---cccccCCCCcceEEccCCCCccCCchhhHHHHH
Q psy8551         282 DNLNLETLTLNKNPKLKTIEE-GALVGLPNLYHLNLKENAFTSF---SESMLAWPELRTIDIAENPIECGCNILWLREML  357 (581)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  357 (581)
                      ++.+|+.+.++++ .++..+. .....+++++.|+++.|-+..+   .....++|+|+.|+++.|.+.+..+        
T Consensus       119 n~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~--------  189 (505)
T KOG3207|consen  119 NLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS--------  189 (505)
T ss_pred             hHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc--------
Confidence            4567788888777 4555442 3456789999999999977643   3455688999999999998753210        


Q ss_pred             hhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccC-hhhhcCCCCCcEeec
Q psy8551         358 VRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEI  436 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l  436 (581)
                                                           +...   ..+++|+.|.++.|.++.-. ...+..+|+|+.|.+
T Consensus       190 -------------------------------------s~~~---~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L  229 (505)
T KOG3207|consen  190 -------------------------------------SNTT---LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYL  229 (505)
T ss_pred             -------------------------------------ccch---hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhh
Confidence                                                 0000   12578999999999887322 134567899999999


Q ss_pred             CCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCc------cCCCCCccEEEc
Q psy8551         437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA------LVGLPNLYHLNL  510 (581)
Q Consensus       437 ~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~l~~L~~L~l  510 (581)
                      ..|............+..|+.|+|++|+.++.-.......++.|+.|+++.| .+.++....      ...+++|++|++
T Consensus       230 ~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i  308 (505)
T KOG3207|consen  230 EANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNI  308 (505)
T ss_pred             hcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeec
Confidence            9886444434444567789999999977666555556778899999999999 666654322      356889999999


Q ss_pred             CCCcceeec--cccccCCcceEEecCCCcccccCc
Q psy8551         511 KENAFTSFS--ESMLAWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       511 ~~n~l~~l~--~~~~~~~~L~~L~l~~np~~c~c~  543 (581)
                      ..|++..++  ..+...++|+.|.+.+|+++-.-+
T Consensus       309 ~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~  343 (505)
T KOG3207|consen  309 SENNIRDWRSLNHLRTLENLKHLRITLNYLNKETD  343 (505)
T ss_pred             ccCccccccccchhhccchhhhhhccccccccccc
Confidence            999998765  446677889999999999875555

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.05  E-value=1.1e-10  Score=100.41  Aligned_cols=129  Identities=28%  Similarity=0.369  Sum_probs=51.5

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcccc-cCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCC
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPSFI-YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGL  213 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L  213 (581)
                      +.+..+++.|++++|.|+.+..  ++ .+.+|+.|++++|.++.+..  +..+++|+.|++++|.++.+.......+++|
T Consensus        15 ~~n~~~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L   90 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNL   90 (175)
T ss_dssp             ---------------------S----TT-TT--EEE-TTS--S--TT------TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred             cccccccccccccccccccccc--hhhhhcCCCEEECCCCCCccccC--ccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence            4566788999999999988753  44 57899999999999998764  7889999999999999998765322458899


Q ss_pred             cEEECCCCcCCccCc-cccCCCCCCCEEECCCCcccccCC---cccCCCcccceeeec
Q psy8551         214 RSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSYLKRLEIT  267 (581)
Q Consensus       214 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  267 (581)
                      ++|++++|++..+.. ..++.+++|+.|++.+|++.....   ..+..+|+|+.|+-.
T Consensus        91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            999999999986542 457788999999999998875432   234456666666543

>KOG1259|consensus

Probab=98.96  E-value=2.1e-10  Score=102.98  Aligned_cols=198  Identities=20%  Similarity=0.227  Sum_probs=129.8

Q ss_pred             cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhc---CCCC
Q psy8551          63 AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACF---EGLT  139 (581)
Q Consensus        63 ~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l---~~~~  139 (581)
                      .+.-+++|..+.+|.+.-..+-. ....-|.|+++.+.+..+   .....+..-..+.+.....=+.......   ..-.
T Consensus       209 ~l~~f~~l~~~~~s~~~~~~i~~-~~~~kptl~t~~v~~s~~---~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq  284 (490)
T KOG1259|consen  209 NLNAFRNLKTLKFSALSTENIVD-IELLKPTLQTICVHNTTI---QDVPSLLPETILADPSGSEPSTSNGSALVSADTWQ  284 (490)
T ss_pred             chHHhhhhheeeeeccchhheec-eeecCchhheeeeecccc---cccccccchhhhcCccCCCCCccCCceEEecchHh
Confidence            34456777777777775433331 112235677777766543   1111111112222222221111111111   2235


Q ss_pred             CCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECC
Q psy8551         140 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLT  219 (581)
Q Consensus       140 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~  219 (581)
                      .|+.+|+++|.|+.+.. ...-.+.++.|+++.|.+..+..  +..+++|+.|++++|.++.+.. +-.++.++++|.++
T Consensus       285 ~LtelDLS~N~I~~iDE-SvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDE-SVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhhhhh-hhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeehh
Confidence            68889999998888765 56667889999999998887765  7788899999999998876543 23457788999999


Q ss_pred             CCcCCccCccccCCCCCCCEEECCCCcccccCC-cccCCCcccceeeecCCC
Q psy8551         220 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEITGAS  270 (581)
Q Consensus       220 ~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~  270 (581)
                      +|.+..+.  .++++-+|..||+++|++..+.. ..++++|.|+.+.+.+|+
T Consensus       361 ~N~iE~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  361 QNKIETLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhHhhhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            99888775  37778889999999998887654 357888999998888764

>KOG1259|consensus

Probab=98.94  E-value=2.6e-10  Score=102.29  Aligned_cols=134  Identities=24%  Similarity=0.354  Sum_probs=111.9

Q ss_pred             CCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCee
Q psy8551         404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL  483 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L  483 (581)
                      ++.|+++++++|.++.+. +.+.-.|.++.|++++|.+..+..  +..+++|+.|++++| .+..+. ++-..+-++++|
T Consensus       283 Wq~LtelDLS~N~I~~iD-ESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N-~Ls~~~-Gwh~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQID-ESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGN-LLAECV-GWHLKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchhhhh-hhhhhccceeEEeccccceeeehh--hhhcccceEeecccc-hhHhhh-hhHhhhcCEeee
Confidence            678999999999998876 678889999999999999998865  788999999999984 444431 223456799999


Q ss_pred             eCCCCCCceeecCCccCCCCCccEEEcCCCcceeec--cccccCCcceEEecCCCcccccCchh
Q psy8551         484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIECGCNIL  545 (581)
Q Consensus       484 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~--~~~~~~~~L~~L~l~~np~~c~c~~~  545 (581)
                      .+++| .+.++  .+++.+-+|.+||+++|+|..+.  ..+.++|-|+.+.+.+||+.-.-+.+
T Consensus       358 ~La~N-~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdYR  418 (490)
T KOG1259|consen  358 KLAQN-KIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDYR  418 (490)
T ss_pred             ehhhh-hHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchHH
Confidence            99999 78876  45788899999999999999776  46788999999999999997766543

>KOG3207|consensus

Probab=98.91  E-value=1.6e-10  Score=109.15  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=16.8

Q ss_pred             CCCCcEEecCCCCCccccc--cccCCCCcceEEccCCCC
Q psy8551         308 LPNLYHLNLKENAFTSFSE--SMLAWPELRTIDIAENPI  344 (581)
Q Consensus       308 ~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~  344 (581)
                      .++|+.|++..|++..++.  .+..+++|+.+.+..|++
T Consensus       300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence            3455555555555543322  233344444444444443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.91  E-value=1.4e-09  Score=109.90  Aligned_cols=188  Identities=27%  Similarity=0.403  Sum_probs=83.7

Q ss_pred             EEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCC-cccEEeCCCCCCCCcccccccCCcccccccCccccc
Q psy8551          50 LVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQE-KLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS  128 (581)
Q Consensus        50 L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~  128 (581)
                      +++..+.+......+..+++++.+++.++.++.++. .....+ +|+.|++++|.+                       .
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i-----------------------~  153 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKI-----------------------E  153 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCcc-ccccchhhcccccccccch-----------------------h
Confidence            445555443222333344556666666666666553 223332 566666666543                       1


Q ss_pred             ccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccC
Q psy8551         129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR  208 (581)
Q Consensus       129 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~  208 (581)
                      .++ ..++.+++|+.|++++|+++.++. ..+..+.|+.|++++|.+..++.. ......|+.+.+++|++.... ..+.
T Consensus       154 ~l~-~~~~~l~~L~~L~l~~N~l~~l~~-~~~~~~~L~~L~ls~N~i~~l~~~-~~~~~~L~~l~~~~N~~~~~~-~~~~  229 (394)
T COG4886         154 SLP-SPLRNLPNLKNLDLSFNDLSDLPK-LLSNLSNLNNLDLSGNKISDLPPE-IELLSALEELDLSNNSIIELL-SSLS  229 (394)
T ss_pred             hhh-hhhhccccccccccCCchhhhhhh-hhhhhhhhhheeccCCccccCchh-hhhhhhhhhhhhcCCcceecc-hhhh
Confidence            110 123444555555555555544443 111344455555555554444431 122233444444444322111 1233


Q ss_pred             CCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecC
Q psy8551         209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG  268 (581)
Q Consensus       209 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  268 (581)
                      .+.++..+.+.+|++..++ ..++.++.++.|++++|.++.+..  ++...+++.+++++
T Consensus       230 ~~~~l~~l~l~~n~~~~~~-~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~  286 (394)
T COG4886         230 NLKNLSGLELSNNKLEDLP-ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSG  286 (394)
T ss_pred             hcccccccccCCceeeecc-chhccccccceecccccccccccc--ccccCccCEEeccC
Confidence            4444444444444444432 234444445555555555444443  44444455555544

>KOG1909|consensus

Probab=98.90  E-value=7.6e-11  Score=108.19  Aligned_cols=248  Identities=23%  Similarity=0.262  Sum_probs=123.5

Q ss_pred             cCccEEEcccCCccc-----ccccccCCCcccEEEcCCCce----eecC------CCCCCCCCcccEEeCCCCCCCCccc
Q psy8551          45 PSIQRLVLSTNRIKT-----VDSAIPIYLSLQHVDLSHTTW----LIIP------IGGFEPQEKLVELQLNHNKHFPQQI  109 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~-----l~~~~~~~~~L~~L~ls~~~l----~~~~------~~~~~~l~~L~~L~l~~n~~~~~~~  109 (581)
                      ..+++++|++|.+..     +...+.+.++|+..++|+--.    ..++      ..++..+++|++||||.|-+.+..+
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            467777777777752     333555666777777765311    1222      1234445566666666655422211


Q ss_pred             ccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCC
Q psy8551         110 VCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL  189 (581)
Q Consensus       110 ~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L  189 (581)
                                        ... ..-++++..|++|.+.+|.+.......++.  .|..|.  .       .....+-++|
T Consensus       110 ------------------~~l-~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~-------~kk~~~~~~L  159 (382)
T KOG1909|consen  110 ------------------RGL-EELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--V-------NKKAASKPKL  159 (382)
T ss_pred             ------------------HHH-HHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--H-------HhccCCCcce
Confidence                              000 112344555666666655554332222111  011111  0       0113344567


Q ss_pred             cEEEcCCCCccccCcc----ccCCCCCCcEEECCCCcCCc----cCccccCCCCCCCEEECCCCcccccCCcccCCCccc
Q psy8551         190 SALDLRGAGLTNISDN----AFRGLSGLRSLVLTDNRLQS----IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL  261 (581)
Q Consensus       190 ~~L~L~~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  261 (581)
                      +++...+|++.+.+..    .|...+.|+.+.+..|.|..    .....+..+++|+.||+.+|.++......+      
T Consensus       160 rv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~L------  233 (382)
T KOG1909|consen  160 RVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVAL------  233 (382)
T ss_pred             EEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHH------
Confidence            7777777766654432    34455677777777776542    223456677777777777776653221111      


Q ss_pred             ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccc-----cccCCCCCcEEecCCCCCc-----cccccccCC
Q psy8551         262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEG-----ALVGLPNLYHLNLKENAFT-----SFSESMLAW  331 (581)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~  331 (581)
                                     ...++..++|+.+++.+| .+.+-...     .-...|+|+.+.+.+|.++     .+.......
T Consensus       234 ---------------akaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek  297 (382)
T KOG1909|consen  234 ---------------AKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEK  297 (382)
T ss_pred             ---------------HHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcc
Confidence                           011222234444444444 33322211     1123567777777777766     122234446


Q ss_pred             CCcceEEccCCCC
Q psy8551         332 PELRTIDIAENPI  344 (581)
Q Consensus       332 ~~L~~L~l~~~~~  344 (581)
                      +.|..|++++|.+
T Consensus       298 ~dL~kLnLngN~l  310 (382)
T KOG1909|consen  298 PDLEKLNLNGNRL  310 (382)
T ss_pred             hhhHHhcCCcccc
Confidence            7777777777776

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.89  E-value=2.3e-09  Score=75.77  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=56.1

Q ss_pred             cCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCC
Q psy8551          45 PSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK  103 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~  103 (581)
                      |++++|++++|+++.+|. .|.++++|++|++++|.++.+++.+|.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            589999999999999985 88999999999999999999999999999999999999986

...

>KOG1909|consensus

Probab=98.88  E-value=2.3e-10  Score=105.05  Aligned_cols=215  Identities=23%  Similarity=0.196  Sum_probs=136.2

Q ss_pred             cCccEEEcccCCc----cccc-------ccccCCCcccEEEcCCCceeecCC----CCCCCCCcccEEeCCCCCCCCccc
Q psy8551          45 PSIQRLVLSTNRI----KTVD-------SAIPIYLSLQHVDLSHTTWLIIPI----GGFEPQEKLVELQLNHNKHFPQQI  109 (581)
Q Consensus        45 ~~l~~L~L~~~~i----~~l~-------~~~~~~~~L~~L~ls~~~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~  109 (581)
                      +.+++.+++.---    ..+|       .++..+++|++||||+|-+..-..    ..+..+..|++|.|.||.+.+...
T Consensus        58 ~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag  137 (382)
T KOG1909|consen   58 KELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAG  137 (382)
T ss_pred             ccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHH
Confidence            4788888885422    2333       366678899999999997663221    235567899999999998744332


Q ss_pred             ccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCCccee----ccCC
Q psy8551         110 VCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFTT----LADG  181 (581)
Q Consensus       110 ~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~~----~~~~  181 (581)
                      -+--   ..|+.+..       ....++-+.|+.+..++|++...+..    .|...+.|+.+.+..|.+..    ....
T Consensus       138 ~~l~---~al~~l~~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~e  207 (382)
T KOG1909|consen  138 GRLG---RALFELAV-------NKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAE  207 (382)
T ss_pred             HHHH---HHHHHHHH-------HhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHH
Confidence            1100   11111111       11234557899999999988765432    35566788888888887652    2224


Q ss_pred             cCCCCCCCcEEEcCCCCccccCc----cccCCCCCCcEEECCCCcCCccCcc----c-cCCCCCCCEEECCCCcccccCC
Q psy8551         182 AFNGLGRLSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQSIPTK----Q-LSKLTRLEELEIGQNGFSMLEA  252 (581)
Q Consensus       182 ~l~~l~~L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~----~-~~~l~~L~~L~l~~~~~~~~~~  252 (581)
                      .+..+++|+.|+|+.|.++....    ..+..+++|+.|++++|.++.-...    . -...|+|+.+.+.+|.++....
T Consensus       208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~  287 (382)
T KOG1909|consen  208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA  287 (382)
T ss_pred             HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence            56788889999998887764433    3455677888888888877743221    1 2336788888888888764322


Q ss_pred             ----cccCCCcccceeeecCC
Q psy8551         253 ----GCFKGLSYLKRLEITGA  269 (581)
Q Consensus       253 ----~~~~~~~~L~~L~l~~~  269 (581)
                          ......+.|..|.+.+|
T Consensus       288 ~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  288 LALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHHHhcchhhHHhcCCcc
Confidence                12233455555555554

>KOG0532|consensus

Probab=98.87  E-value=7.6e-11  Score=114.77  Aligned_cols=189  Identities=23%  Similarity=0.308  Sum_probs=126.8

Q ss_pred             ccCCCccCCCCCC----cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCc
Q psy8551          32 QEANLDVIPSHSN----PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQ  107 (581)
Q Consensus        32 ~~~~l~~ip~~~~----~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~  107 (581)
                      .++.+...|....    ......||+.|++..+|..+..|-.|+.+.|..|.+..++. .+.++..|++||++.|++   
T Consensus        58 s~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~-~i~~L~~lt~l~ls~Nql---  133 (722)
T KOG0532|consen   58 SGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPE-AICNLEALTFLDLSSNQL---  133 (722)
T ss_pred             ccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecch-hhhhhhHHHHhhhccchh---
Confidence            5566666555332    35667888999999999888888889999999888888884 688888899999998875   


Q ss_pred             ccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCC
Q psy8551         108 QIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG  187 (581)
Q Consensus       108 ~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~  187 (581)
                                          +.++.. +.. --|+.|-+++|+++.+|. .++...+|..|+.+.|.+..++.. ++.+.
T Consensus       134 --------------------S~lp~~-lC~-lpLkvli~sNNkl~~lp~-~ig~~~tl~~ld~s~nei~slpsq-l~~l~  189 (722)
T KOG0532|consen  134 --------------------SHLPDG-LCD-LPLKVLIVSNNKLTSLPE-EIGLLPTLAHLDVSKNEIQSLPSQ-LGYLT  189 (722)
T ss_pred             --------------------hcCChh-hhc-CcceeEEEecCccccCCc-ccccchhHHHhhhhhhhhhhchHH-hhhHH
Confidence                                212111 111 225666666677666665 344566666677777766666553 56666


Q ss_pred             CCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccC
Q psy8551         188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  251 (581)
Q Consensus       188 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~  251 (581)
                      +|+.|+++.|++..++.. +. .-.|..||++.|+++.+| -.|.++..|++|.|.+|.+...+
T Consensus       190 slr~l~vrRn~l~~lp~E-l~-~LpLi~lDfScNkis~iP-v~fr~m~~Lq~l~LenNPLqSPP  250 (722)
T KOG0532|consen  190 SLRDLNVRRNHLEDLPEE-LC-SLPLIRLDFSCNKISYLP-VDFRKMRHLQVLQLENNPLQSPP  250 (722)
T ss_pred             HHHHHHHhhhhhhhCCHH-Hh-CCceeeeecccCceeecc-hhhhhhhhheeeeeccCCCCCCh
Confidence            777777777766666553 22 335667777777777776 35667777777777777665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.86  E-value=4.1e-09  Score=106.54  Aligned_cols=179  Identities=27%  Similarity=0.404  Sum_probs=119.9

Q ss_pred             cCccEEEcccCCcccccccccCCC-cccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~-~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      +.++.|++.++.+.+++....... +|+.|++++|++..++ ..+..+++|+.|++++|.+                   
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l-------------------  175 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDL-------------------  175 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhh-hhhhccccccccccCCchh-------------------
Confidence            467778888888887777666664 7888888888777775 3467777788888877753                   


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                          .+++.. .+..+.|+.|++++|++..++. ......+|+++.+++|.+...+. .+.++..+..+.+.++++... 
T Consensus       176 ----~~l~~~-~~~~~~L~~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~~~~~-~~~~~~~l~~l~l~~n~~~~~-  247 (394)
T COG4886         176 ----SDLPKL-LSNLSNLNNLDLSGNKISDLPP-EIELLSALEELDLSNNSIIELLS-SLSNLKNLSGLELSNNKLEDL-  247 (394)
T ss_pred             ----hhhhhh-hhhhhhhhheeccCCccccCch-hhhhhhhhhhhhhcCCcceecch-hhhhcccccccccCCceeeec-
Confidence                222221 2256777788888888777776 23445667777777775333322 356667777777777766543 


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCc
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG  253 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~  253 (581)
                      +..+..+++++.|++++|+++.++.  +....++++++++++.+....+.
T Consensus       248 ~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         248 PESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             cchhccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence            2345666778888888887777764  66777788888877776655443

>KOG4658|consensus

Probab=98.77  E-value=7.6e-09  Score=111.83  Aligned_cols=140  Identities=24%  Similarity=0.276  Sum_probs=106.8

Q ss_pred             CCCccCCCCCC-cCccEEEcccCCcccccccccCCCcccEEEcCCCc--eeecCCCCCCCCCcccEEeCCCCCCCCcccc
Q psy8551          34 ANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTT--WLIIPIGGFEPQEKLVELQLNHNKHFPQQIV  110 (581)
Q Consensus        34 ~~l~~ip~~~~-~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  110 (581)
                      .++..+|.... ..++++.+-++.+..++... .+++|++|-+..|.  +..++...|..++.|++||+++|..      
T Consensus       511 ~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~------  583 (889)
T KOG4658|consen  511 VGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS------  583 (889)
T ss_pred             cCccccccccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc------
Confidence            45555665543 68899999999998877654 55589999999886  7788877899999999999998752      


Q ss_pred             cccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCc
Q psy8551         111 CSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS  190 (581)
Q Consensus       111 ~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~  190 (581)
                                      +..+ |..++++-+|++|++++..+..+|. .+.++..|.+|++..+......+.....+++|+
T Consensus       584 ----------------l~~L-P~~I~~Li~LryL~L~~t~I~~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  584 ----------------LSKL-PSSIGELVHLRYLDLSDTGISHLPS-GLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             ----------------cCcC-ChHHhhhhhhhcccccCCCccccch-HHHHHHhhheeccccccccccccchhhhccccc
Confidence                            2222 4457788899999999999998887 788889999999987764444454555688888


Q ss_pred             EEEcCCCC
Q psy8551         191 ALDLRGAG  198 (581)
Q Consensus       191 ~L~L~~~~  198 (581)
                      +|.+....
T Consensus       646 ~L~l~~s~  653 (889)
T KOG4658|consen  646 VLRLPRSA  653 (889)
T ss_pred             EEEeeccc
Confidence            88877654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.73  E-value=1.2e-08  Score=72.01  Aligned_cols=60  Identities=33%  Similarity=0.450  Sum_probs=38.4

Q ss_pred             CCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC
Q psy8551         139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG  198 (581)
Q Consensus       139 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~  198 (581)
                      ++|+.|++++|+++.++...|..+++|++|++++|.++.+++..|.++++|+.|++++|+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            355666666666666666666666666666666666666666666666666666666654

...

>KOG1859|consensus

Probab=98.65  E-value=8.1e-10  Score=110.69  Aligned_cols=128  Identities=27%  Similarity=0.419  Sum_probs=99.4

Q ss_pred             CCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeee
Q psy8551         405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT  484 (581)
Q Consensus       405 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~  484 (581)
                      -.|...+.+.|.+..+. ..+.-++.|+.|+|++|++..+.  .+..|+.|++|+|+. |.+..++.-....|+ |+.|.
T Consensus       164 n~L~~a~fsyN~L~~mD-~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc~-L~~L~  238 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMD-ESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSY-NCLRHVPQLSMVGCK-LQLLN  238 (1096)
T ss_pred             hhHhhhhcchhhHHhHH-HHHHHHHHhhhhccchhhhhhhH--HHHhccccccccccc-chhccccccchhhhh-heeee
Confidence            34666677777776554 56777888888888888888776  577888888888887 566666555555565 99999


Q ss_pred             CCCCCCceeecCCccCCCCCccEEEcCCCcceeecc--ccccCCcceEEecCCCcccc
Q psy8551         485 LNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       485 l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~--~~~~~~~L~~L~l~~np~~c  540 (581)
                      +++| .++.+  .++.++.+|+.||+++|-|.+..+  -+..+..|+.|++.|||+-|
T Consensus       239 lrnN-~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  239 LRNN-ALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             eccc-HHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            9999 77776  458899999999999998886542  35567889999999999966

>KOG4658|consensus

Probab=98.62  E-value=2.2e-08  Score=108.32  Aligned_cols=202  Identities=20%  Similarity=0.257  Sum_probs=120.5

Q ss_pred             CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCc--ceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcE
Q psy8551         138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV--FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS  215 (581)
Q Consensus       138 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  215 (581)
                      ....+.+.+.+|.+..++..  ..+++|++|-+..|.  +..+....|..++.|+.||+++|.--...|..++.+-+|++
T Consensus       522 ~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry  599 (889)
T KOG4658|consen  522 WNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY  599 (889)
T ss_pred             hhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence            35566677777766655542  234578888777775  45555555777888888888877544445667788888888


Q ss_pred             EECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC-CceeecCccCCCCCCCCEEeCCCC
Q psy8551         216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS-NLTRVRKGAFADNLNLETLTLNKN  294 (581)
Q Consensus       216 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~  294 (581)
                      |+++++.++.+| ..++++..|.+|++..+......+.....+++|+.|.+.... .........+..+.+|+.+.....
T Consensus       600 L~L~~t~I~~LP-~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~  678 (889)
T KOG4658|consen  600 LDLSDTGISHLP-SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITIS  678 (889)
T ss_pred             ccccCCCccccc-hHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecc
Confidence            888888888887 458888888888887765544445555667888888876532 111111222233344444444322


Q ss_pred             CCccccccccccCCCCCc----EEecCCCCCccccccccCCCCcceEEccCCCCc
Q psy8551         295 PKLKTIEEGALVGLPNLY----HLNLKENAFTSFSESMLAWPELRTIDIAENPIE  345 (581)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~----~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  345 (581)
                      . . .+. ..+..+..|.    .+.+.++.....+..+..+.+|+.|.+.++.+.
T Consensus       679 s-~-~~~-e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  679 S-V-LLL-EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             h-h-HhH-hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCc
Confidence            1 1 000 0122222222    333333444455556667778888888877653

>KOG0531|consensus

Probab=98.60  E-value=5.9e-09  Score=105.47  Aligned_cols=85  Identities=26%  Similarity=0.395  Sum_probs=37.5

Q ss_pred             CCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc-cccCCCCCCcE
Q psy8551         137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRS  215 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~  215 (581)
                      .+++|++|++++|.|+.+..  +..+..|+.|++++|.+..+..  +..++.|+.+++++|.+..+.. . ...+.+++.
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~  190 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEE  190 (414)
T ss_pred             hhhcchheeccccccccccc--hhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence            34444444555444444432  3334444455555554444432  3334444555555544444332 1 233444444


Q ss_pred             EECCCCcCCcc
Q psy8551         216 LVLTDNRLQSI  226 (581)
Q Consensus       216 L~l~~n~l~~~  226 (581)
                      +.+.+|.+..+
T Consensus       191 l~l~~n~i~~i  201 (414)
T KOG0531|consen  191 LDLGGNSIREI  201 (414)
T ss_pred             HhccCCchhcc
Confidence            45555444433

>KOG0531|consensus

Probab=98.60  E-value=7.9e-09  Score=104.55  Aligned_cols=190  Identities=25%  Similarity=0.309  Sum_probs=107.5

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      ..++.+.+..+.|..+...+..+++|+.|++.+|+|+.+.. .+..+++|++|++++|.+                    
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I--------------------  130 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKI--------------------  130 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc-chhhhhcchheecccccc--------------------
Confidence            45666667777777755557778888888888888877763 266778888888888764                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccccC
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                         +.+..  +..++.|+.|++++|.++.+..  +..+..|+.+++++|.+..+.. . ...+.+++.+.+.+|.+..+.
T Consensus       131 ---~~i~~--l~~l~~L~~L~l~~N~i~~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  131 ---TKLEG--LSTLTLLKELNLSGNLISDISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             ---ccccc--hhhccchhhheeccCcchhccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc
Confidence               22211  3344446666666666666553  3446666666666666665544 1 345556666666666555443


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCC--CCEEECCCCcccccCCcccCCCcccceeeecC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR--LEELEIGQNGFSMLEAGCFKGLSYLKRLEITG  268 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~  268 (581)
                      .  +..+..+..+++..|.++.+..  +..+..  |+.+.+++|++.... ..+..+..+..+++..
T Consensus       203 ~--~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~  264 (414)
T KOG0531|consen  203 G--LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSS  264 (414)
T ss_pred             c--hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcccccc-ccccccccccccchhh
Confidence            2  2222333344555555554432  222222  556666666555442 1233344444444443

>KOG0532|consensus

Probab=98.50  E-value=5e-09  Score=102.39  Aligned_cols=185  Identities=23%  Similarity=0.258  Sum_probs=132.7

Q ss_pred             CccccccCCCccCCCCCC--cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCC
Q psy8551          27 PSCNLQEANLDVIPSHSN--PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH  104 (581)
Q Consensus        27 ~~c~~~~~~l~~ip~~~~--~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~  104 (581)
                      +.-++++++...+|....  -.|+.+.|+.|.+..+|..+.++..|+.|||+.|++..+|.. +..+ -|+.|-+++|++
T Consensus        78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNNkl  155 (722)
T KOG0532|consen   78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNNKL  155 (722)
T ss_pred             hhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecCcc
Confidence            334457888888888664  689999999999999999999999999999999999988854 3333 388999999886


Q ss_pred             --CCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC
Q psy8551         105 --FPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD  180 (581)
Q Consensus       105 --~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~  180 (581)
                        +|.    .++...+|.  +.+.|++..++.. ++++.+|+.|++..|++..++. .+. .-.|..||++.|++..++.
T Consensus       156 ~~lp~----~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~~lp~-El~-~LpLi~lDfScNkis~iPv  228 (722)
T KOG0532|consen  156 TSLPE----EIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLEDLPE-ELC-SLPLIRLDFSCNKISYLPV  228 (722)
T ss_pred             ccCCc----ccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhhhCCH-HHh-CCceeeeecccCceeecch
Confidence              333    233334444  5566777766544 7778888888888888888776 344 4457788888888887775


Q ss_pred             CcCCCCCCCcEEEcCCCCccccCcccc--CCCCCCcEEECCCC
Q psy8551         181 GAFNGLGRLSALDLRGAGLTNISDNAF--RGLSGLRSLVLTDN  221 (581)
Q Consensus       181 ~~l~~l~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~l~~n  221 (581)
                       .|.++++|++|.|.+|.+..-+....  +...-.++|+...+
T Consensus       229 -~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  229 -DFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             -hhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence             47888888888888887775443211  11223456666555

>KOG2982|consensus

Probab=98.47  E-value=2.5e-08  Score=89.78  Aligned_cols=206  Identities=22%  Similarity=0.319  Sum_probs=125.6

Q ss_pred             CCcEEeCCCCcCcccCCc-cc-ccCccCcEEECCCCcceecc--CCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcE
Q psy8551         140 ALRILYLDDNQLRSVPTP-SF-IYLGMLAELRVGLNVFTTLA--DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS  215 (581)
Q Consensus       140 ~L~~L~l~~~~i~~~~~~-~~-~~~~~L~~L~L~~n~~~~~~--~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  215 (581)
                      .++.+.+.++.|...... .| ..++.++.++|.+|.++...  ...+.++|+|+.|+++.|.+.......-....+|+.
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~  125 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV  125 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence            334455555555543321 22 34677778888888776322  224567788888888888776443321134567888


Q ss_pred             EECCCCcCC-ccCccccCCCCCCCEEECCCCccccc--CCcccCCC-cccceeeecCCCCceeecCccC-CCCCCCCEEe
Q psy8551         216 LVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSML--EAGCFKGL-SYLKRLEITGASNLTRVRKGAF-ADNLNLETLT  290 (581)
Q Consensus       216 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~  290 (581)
                      |-+.++.+. ......+..+|.+++|+++.|.....  ........ +.++++.+.+|....+.....+ .-++++..+.
T Consensus       126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~  205 (418)
T KOG2982|consen  126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF  205 (418)
T ss_pred             EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence            888887665 22334566788888888888854422  11112111 3455665555543322221111 2346788888


Q ss_pred             CCCCCCccccccccccCCCCCcEEecCCCCCcccc--ccccCCCCcceEEccCCCCc
Q psy8551         291 LNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPIE  345 (581)
Q Consensus       291 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~~~  345 (581)
                      +..|+.-+.-....+...|.+.-|+++.+++.++.  +.+..++.|..|.++++++.
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            88885444444556777888888999999888554  36677888999999988875

>PLN03150 hypothetical protein; Provisional

Probab=98.46  E-value=2.2e-07  Score=98.53  Aligned_cols=106  Identities=21%  Similarity=0.271  Sum_probs=59.4

Q ss_pred             CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551         407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN  486 (581)
Q Consensus       407 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~  486 (581)
                      ++.|+|++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++| .+....+..+.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYN-SFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCC-CCCCCCchHHhcCCCCCEEECc
Confidence            566777777776665666777777777777777776665555566666666666552 3444444445555555555555


Q ss_pred             CCCCceeecCCccCC-CCCccEEEcCCCc
Q psy8551         487 KNPKLKIIEEDALVG-LPNLYHLNLKENA  514 (581)
Q Consensus       487 ~~~~l~~~~~~~~~~-l~~L~~L~l~~n~  514 (581)
                      +|...+.+|. .+.. ..++..+++.+|.
T Consensus       499 ~N~l~g~iP~-~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        499 GNSLSGRVPA-ALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CCcccccCCh-HHhhccccCceEEecCCc
Confidence            5533334432 2222 2234445555544

>TIGR00864 PCC polycystin cation channel protein

Probab=98.43  E-value=1.5e-07  Score=108.74  Aligned_cols=72  Identities=24%  Similarity=0.494  Sum_probs=62.5

Q ss_pred             EcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhhcC-----CCceeeCCCcccccccccccCcccc
Q psy8551         509 NLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       509 ~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~~-----~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      ||++|+|+.+++. +..+++|++|+|++|||.|+|+++||.+|++...     ...+.|..|..++|+++.+++..|+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~   78 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDS   78 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccC
Confidence            5899999999865 4468899999999999999999999999998863     3345799999999999999988764

Note: this model has been restricted to the amino half because for technical reasons.

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.39  E-value=1.3e-06  Score=72.80  Aligned_cols=104  Identities=20%  Similarity=0.390  Sum_probs=39.2

Q ss_pred             ccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccC
Q psy8551         129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR  208 (581)
Q Consensus       129 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~  208 (581)
                      .+...+|.++++|+.+.+.++ +..+....|..+.+++.+.+.. .+..+....|..++.|+.+.+..+ +..+....|.
T Consensus        25 ~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~  101 (129)
T PF13306_consen   25 KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFS  101 (129)
T ss_dssp             EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTT
T ss_pred             EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhc
Confidence            344444555555555555543 5555554555555555555543 334444444555555555555443 3334444444


Q ss_pred             CCCCCcEEECCCCcCCccCccccCCCCCC
Q psy8551         209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRL  237 (581)
Q Consensus       209 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  237 (581)
                      .+ +|+.+.+.. .++.++...|.++++|
T Consensus       102 ~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  102 NC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--T--EEE-TT-B-SS----GGG-----
T ss_pred             CC-CceEEEECC-CccEECCccccccccC
Confidence            44 555555443 3444444444444443

>KOG2120|consensus

Probab=98.37  E-value=3.7e-09  Score=95.00  Aligned_cols=180  Identities=21%  Similarity=0.141  Sum_probs=98.3

Q ss_pred             ccCcEEECCCCcceec-cCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCC-cCCccC-ccccCCCCCCCE
Q psy8551         163 GMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIP-TKQLSKLTRLEE  239 (581)
Q Consensus       163 ~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~  239 (581)
                      ..|++++|+...++.- ....+..|.+|+.|.+.++++.+.....+++..+|+.|+++.+ .++... .-.+.+|+.|.+
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            3466666666655521 1123456666666666666666555555666666777776654 233211 123456667777


Q ss_pred             EECCCCcccccCC-ccc-CCCcccceeeecCCCCceeec--CccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEe
Q psy8551         240 LEIGQNGFSMLEA-GCF-KGLSYLKRLEITGASNLTRVR--KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN  315 (581)
Q Consensus       240 L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  315 (581)
                      |++++|......- ..+ .--++|+.|+++|+...-...  ..-...+++|.+||++++..+..-....|.+++.|+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS  344 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence            7777765432110 000 112456666666643211111  011235677888888877555543344566778888888


Q ss_pred             cCCCCCc--cccccccCCCCcceEEccCC
Q psy8551         316 LKENAFT--SFSESMLAWPELRTIDIAEN  342 (581)
Q Consensus       316 l~~~~l~--~~~~~~~~~~~L~~L~l~~~  342 (581)
                      ++.|...  +.--.+...|+|.+|++.++
T Consensus       345 lsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  345 LSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            8877533  11113446678888888765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=98.35  E-value=1.1e-06  Score=73.26  Aligned_cols=126  Identities=22%  Similarity=0.403  Sum_probs=57.9

Q ss_pred             cchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCC
Q psy8551         130 IDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG  209 (581)
Q Consensus       130 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~  209 (581)
                      ++..+|.++++|+.+.+.. .+..+....|..+.+|+.+.+..+ +..+...+|.++++|+.+.+.+ .+..+....|..
T Consensus         3 i~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~   79 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN   79 (129)
T ss_dssp             E-TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred             ECHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc
Confidence            3455577777777777764 466666666766767777776654 5555555666666677766654 444444555666


Q ss_pred             CCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCccc
Q psy8551         210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL  261 (581)
Q Consensus       210 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  261 (581)
                      +++|+.+.+..+ +..+....+.++ +|+.+.+.. .+..+....|.++++|
T Consensus        80 ~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   80 CTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             -TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred             cccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence            666666666553 555555555555 666666554 3444444445444443

>PLN03150 hypothetical protein; Provisional

Probab=98.31  E-value=1.3e-06  Score=92.73  Aligned_cols=108  Identities=17%  Similarity=0.227  Sum_probs=87.4

Q ss_pred             cCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECC
Q psy8551         164 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG  243 (581)
Q Consensus       164 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  243 (581)
                      .++.|+|++|.+.+..+..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++++..+..+..+++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47788999999887777778899999999999999887777778889999999999999987666788899999999999


Q ss_pred             CCcccccCCcccCCC-cccceeeecCCCC
Q psy8551         244 QNGFSMLEAGCFKGL-SYLKRLEITGASN  271 (581)
Q Consensus       244 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~~  271 (581)
                      +|.+.+..+..+... ..+..+++.+|..
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCcc
Confidence            998887666555442 3456677776643

>KOG2120|consensus

Probab=98.28  E-value=7.6e-09  Score=93.04  Aligned_cols=202  Identities=18%  Similarity=0.141  Sum_probs=113.2

Q ss_pred             cCccEEEcccCCccc--ccccccCC-CcccEEEcCCCceee-cCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc
Q psy8551          45 PSIQRLVLSTNRIKT--VDSAIPIY-LSLQHVDLSHTTWLI-IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE  120 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~--l~~~~~~~-~~L~~L~ls~~~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  120 (581)
                      ..+..+.+...-+.+  +-+.+.-+ ..|+++|||+..|+. -....+.+|.+|+.|.+.++.                 
T Consensus       159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-----------------  221 (419)
T KOG2120|consen  159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-----------------  221 (419)
T ss_pred             CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-----------------
Confidence            455666666443332  11222222 257788888777662 112346677778888777765                 


Q ss_pred             ccCcccccccchhhcCCCCCCcEEeCCCC-cCcccCCc-ccccCccCcEEECCCCcceeccCC-cCCC-CCCCcEEEcCC
Q psy8551         121 IFGQNRISRIDQACFEGLTALRILYLDDN-QLRSVPTP-SFIYLGMLAELRVGLNVFTTLADG-AFNG-LGRLSALDLRG  196 (581)
Q Consensus       121 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~i~~~~~~-~~~~~~~L~~L~L~~n~~~~~~~~-~l~~-l~~L~~L~L~~  196 (581)
                            +.+-....+++-.+|+.|+++.+ +++.-... .+.+|+.|+.|+|+.+.+..-... .+.+ -++|+.|+++|
T Consensus       222 ------LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG  295 (419)
T KOG2120|consen  222 ------LDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSG  295 (419)
T ss_pred             ------cCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhh
Confidence                  22233444556667777777654 33322211 245677777777777654321111 1111 24677777777


Q ss_pred             CC--ccccC-ccccCCCCCCcEEECCCC-cCCccCccccCCCCCCCEEECCCCccccc-CCcccCCCcccceeeecCC
Q psy8551         197 AG--LTNIS-DNAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       197 ~~--l~~~~-~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~  269 (581)
                      +.  +..-. ..-...+++|.+|||+++ .++.-....|.+++.|++|.++.|..-.. ....+...|.|.+|++.|+
T Consensus       296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            52  11111 112245888889999886 34443335567788899999988753211 1123567788888888775

>KOG4341|consensus

Probab=98.27  E-value=1.8e-08  Score=94.98  Aligned_cols=147  Identities=16%  Similarity=0.105  Sum_probs=91.4

Q ss_pred             CCCCCEEEcCCCc-CCccChhhh-cCCCCCcEeecCCCc-ceeeccccc-cCCccccEEeecCCCCeeEe-cCCccCCCC
Q psy8551         404 LSGLRSLVLTDNR-LQSIPTKQL-SKLTRLEELEIGQNG-FSMLEAGCF-KGLSYLKRLEITGASNLTRV-RKGAFADNL  478 (581)
Q Consensus       404 ~~~L~~L~l~~n~-l~~~~~~~l-~~l~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~  478 (581)
                      +..|+.|..+++. ++......+ .++++|+.|.++.++ ++......+ .+++.|+.+++.+|..+.+. ....-.+|+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            6667777777663 333322222 457788888887774 554443333 45677888888777655544 223335678


Q ss_pred             CCCeeeCCCCCCceeecC----CccCCCCCccEEEcCCCcce--eeccccccCCcceEEecCCCcccccCchhHHHHH
Q psy8551         479 NLETLTLNKNPKLKIIEE----DALVGLPNLYHLNLKENAFT--SFSESMLAWPELRTIDIAENPIECGCNILWLREM  550 (581)
Q Consensus       479 ~L~~L~l~~~~~l~~~~~----~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~  550 (581)
                      .|+.+.++.|..+++...    ..-..+..|+.+.+++|+.+  ...+.+..++.|+.+++.+++-...-..+.|..-
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~  450 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH  450 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence            888888887755544311    12234567888888888754  3445667788888888888777665555544443

>KOG4341|consensus

Probab=98.19  E-value=6.9e-08  Score=91.17  Aligned_cols=300  Identities=17%  Similarity=0.104  Sum_probs=163.7

Q ss_pred             CCCcEEEcCCCCccccCc--cccCCCCCCcEEECCCCc-CCccCccc-cCCCCCCCEEECCCC-cccccCCc-ccCCCcc
Q psy8551         187 GRLSALDLRGAGLTNISD--NAFRGLSGLRSLVLTDNR-LQSIPTKQ-LSKLTRLEELEIGQN-GFSMLEAG-CFKGLSY  260 (581)
Q Consensus       187 ~~L~~L~L~~~~l~~~~~--~~l~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~~-~~~~~~~  260 (581)
                      ..|+.|.++++.-....+  .....++++++|.+.++. +++..... -..+++|+++++..| .++..... ....+++
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k  217 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK  217 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence            356777777663222211  123457777777776663 22221111 234677777777663 33332222 2345667


Q ss_pred             cceeeecCCCCceeecCc-cCCCCCCCCEEeCCCCCCcccccc-ccccCCCCCcEEecCCCCC-ccc--cccccCCCCcc
Q psy8551         261 LKRLEITGASNLTRVRKG-AFADNLNLETLTLNKNPKLKTIEE-GALVGLPNLYHLNLKENAF-TSF--SESMLAWPELR  335 (581)
Q Consensus       261 L~~L~l~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l-~~~--~~~~~~~~~L~  335 (581)
                      |+++++++|+.++.-... .+.++..++.+...+|...+.... ..-..++-+.++++..+.. +..  ...-..+..|+
T Consensus       218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            777777776655542221 122344455555555422221110 0112334455555555422 211  11111334555


Q ss_pred             eEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC
Q psy8551         336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN  415 (581)
Q Consensus       336 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n  415 (581)
                      .++.+++....+..                                               -...-.++.+|+.|.+.++
T Consensus       298 ~l~~s~~t~~~d~~-----------------------------------------------l~aLg~~~~~L~~l~l~~c  330 (483)
T KOG4341|consen  298 VLCYSSCTDITDEV-----------------------------------------------LWALGQHCHNLQVLELSGC  330 (483)
T ss_pred             hhcccCCCCCchHH-----------------------------------------------HHHHhcCCCceEEEecccc
Confidence            55555542211100                                               0111234788999999888


Q ss_pred             c-CCccChhhh-cCCCCCcEeecCCCcceee--ccccccCCccccEEeecCCCCeeEecCCcc----CCCCCCCeeeCCC
Q psy8551         416 R-LQSIPTKQL-SKLTRLEELEIGQNGFSML--EAGCFKGLSYLKRLEITGASNLTRVRKGAF----ADNLNLETLTLNK  487 (581)
Q Consensus       416 ~-l~~~~~~~l-~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~----~~~~~L~~L~l~~  487 (581)
                      + ++......+ .+++.|+.+++..+.....  ....-.+++.|+.++++.|..+++.+...+    ..+..|+.+.+++
T Consensus       331 ~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n  410 (483)
T KOG4341|consen  331 QQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDN  410 (483)
T ss_pred             chhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecC
Confidence            5 444332333 4678899999888754422  233346789999999998887776643333    3457888999999


Q ss_pred             CCCceeecCCccCCCCCccEEEcCCCc-ce--eeccccccCCcceEEec
Q psy8551         488 NPKLKIIEEDALVGLPNLYHLNLKENA-FT--SFSESMLAWPELRTIDI  533 (581)
Q Consensus       488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~--~l~~~~~~~~~L~~L~l  533 (581)
                      |+.+.+...+.+..+++|+.+++.+|. ++  .+.....++|+++...+
T Consensus       411 ~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  411 CPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY  459 (483)
T ss_pred             CCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence            988887766677888999999998886 44  23333345666665443

>KOG1644|consensus

Probab=98.17  E-value=2.2e-06  Score=73.17  Aligned_cols=127  Identities=20%  Similarity=0.212  Sum_probs=75.5

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      .=++++|.+.++..+...=.-..+...+||++|.+..++  .|.+++.|..|.+++|.                      
T Consensus        20 ~e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~--~lp~l~rL~tLll~nNr----------------------   75 (233)
T KOG1644|consen   20 RERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD--NLPHLPRLHTLLLNNNR----------------------   75 (233)
T ss_pred             cccccccccccccchhhccccccccceecccccchhhcc--cCCCccccceEEecCCc----------------------
Confidence            345566666666544331113446667777777766655  46677777777777765                      


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcceeccC---CcCCCCCCCcEEEcCCC
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDLRGA  197 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L~~~  197 (581)
                       |+.+.+.--.-+++|..|.+.+|++..+.. ..+..|++|++|.+-+|+++....   ..+..+++|+.||+.+-
T Consensus        76 -It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   76 -ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             -ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence             344444433345667777777776665432 134567777777777776654332   24556666666666553

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.16  E-value=1.7e-06  Score=55.63  Aligned_cols=40  Identities=23%  Similarity=0.310  Sum_probs=32.9

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecC
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP   84 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~   84 (581)
                      ++|++|++++|+|+++|..+.++++|++|++++|+++.++
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            4788999999999999888889999999999999887665

...

>KOG1859|consensus

Probab=98.12  E-value=6.4e-08  Score=97.47  Aligned_cols=144  Identities=23%  Similarity=0.219  Sum_probs=100.5

Q ss_pred             chhhhhhhcCC-CCCCCCCC-ccCCCccccccCCCccCCCC--CCcCccEEEcccCCcccccccccCCCcccEEEcCCCc
Q psy8551           4 DAGQELRSKCM-NPYEPSRF-STRDPSCNLQEANLDVIPSH--SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTT   79 (581)
Q Consensus         4 ~~~~~~~~~~~-~~c~~~~~-~~~~~~c~~~~~~l~~ip~~--~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~   79 (581)
                      +|...+..+|= +-|--..| ....+.|  .-+.+..+...  +.+.++.|+|+.|+++++. .+..+++|++|||+.|.
T Consensus       144 ~Al~~v~ascggd~~ns~~Wn~L~~a~f--syN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~  220 (1096)
T KOG1859|consen  144 DALRHVFASCGGDISNSPVWNKLATASF--SYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC  220 (1096)
T ss_pred             HHHHHHHHHhccccccchhhhhHhhhhc--chhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch
Confidence            45555555554 44555556 6778888  66666666554  4589999999999998876 68889999999999999


Q ss_pred             eeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCc-c
Q psy8551          80 WLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP-S  158 (581)
Q Consensus        80 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~  158 (581)
                      ++.+|.-....+. |..|++.+|..                       +.+  ..+.++++|+.||++.|-+.+...- .
T Consensus       221 L~~vp~l~~~gc~-L~~L~lrnN~l-----------------------~tL--~gie~LksL~~LDlsyNll~~hseL~p  274 (1096)
T KOG1859|consen  221 LRHVPQLSMVGCK-LQLLNLRNNAL-----------------------TTL--RGIENLKSLYGLDLSYNLLSEHSELEP  274 (1096)
T ss_pred             hccccccchhhhh-heeeeecccHH-----------------------Hhh--hhHHhhhhhhccchhHhhhhcchhhhH
Confidence            9988876666666 89999998853                       221  1255677788888887766543321 2


Q ss_pred             cccCccCcEEECCCCcce
Q psy8551         159 FIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       159 ~~~~~~L~~L~L~~n~~~  176 (581)
                      +..+..|+.|.|.+|.+.
T Consensus       275 LwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  275 LWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             HHHHHHHHHHhhcCCccc
Confidence            344567777778777653

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=5.6e-06  Score=53.26  Aligned_cols=36  Identities=33%  Similarity=0.620  Sum_probs=17.0

Q ss_pred             CccEEEcCCCcceeeccccccCCcceEEecCCCccc
Q psy8551         504 NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE  539 (581)
Q Consensus       504 ~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~  539 (581)
                      +|++|++++|+|+.+|+.+..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            445555555555555444445555555555555543

...

>KOG1644|consensus

Probab=97.93  E-value=1.8e-05  Score=67.80  Aligned_cols=124  Identities=23%  Similarity=0.241  Sum_probs=76.6

Q ss_pred             cEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCC
Q psy8551         142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN  221 (581)
Q Consensus       142 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n  221 (581)
                      +.+++.+.++..+.. .-....+...++|.+|.+.....  |..++.|.+|.+++|+++.+.+.--.-+++|..|.+.+|
T Consensus        22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN   98 (233)
T KOG1644|consen   22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN   98 (233)
T ss_pred             cccccccccccchhh-ccccccccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence            445555555443332 11123456677777777665543  677778888888888888777754445677888888888


Q ss_pred             cCCccCc-cccCCCCCCCEEECCCCcccccC---CcccCCCcccceeeecC
Q psy8551         222 RLQSIPT-KQLSKLTRLEELEIGQNGFSMLE---AGCFKGLSYLKRLEITG  268 (581)
Q Consensus       222 ~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~  268 (581)
                      .+..+.. ..+..+|+|++|.+-+|.++...   ...+..+++|+.|++++
T Consensus        99 si~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   99 SIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             chhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            7764421 33667778888888777765332   22344555566665554

>KOG2982|consensus

Probab=97.89  E-value=2.8e-06  Score=76.86  Aligned_cols=211  Identities=20%  Similarity=0.236  Sum_probs=111.7

Q ss_pred             CCCCCEEeCCCCCCcccccc--ccccCCCCCcEEecCCCCCccccccc-cCCCCcceEEccCCCCccCCchhhHHHHHhh
Q psy8551         283 NLNLETLTLNKNPKLKTIEE--GALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCNILWLREMLVR  359 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  359 (581)
                      ++.++.+++.+| .+.++..  ..+.++|.|+.|+++.|++....... ....+|+.|.+.+..+.      |       
T Consensus        70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~------w-------  135 (418)
T KOG2982|consen   70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS------W-------  135 (418)
T ss_pred             hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC------h-------
Confidence            356667777776 4544432  23456777777777777665333322 34556677766665442      1       


Q ss_pred             cCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccC--hhhhcC-CCCCcEeec
Q psy8551         360 RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSK-LTRLEELEI  436 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~-l~~L~~L~l  436 (581)
                                                        +. ....+..+|.+++|+++.|++..+.  .++... -+.+.+|+.
T Consensus       136 ----------------------------------~~-~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~  180 (418)
T KOG2982|consen  136 ----------------------------------TQ-STSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQ  180 (418)
T ss_pred             ----------------------------------hh-hhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhc
Confidence                                              00 1122334566777777777443221  111111 123444444


Q ss_pred             CCCcceee--ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeec-CCccCCCCCccEEEcCCC
Q psy8551         437 GQNGFSML--EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE-EDALVGLPNLYHLNLKEN  513 (581)
Q Consensus       437 ~~~~i~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~l~~L~~L~l~~n  513 (581)
                      -.|.....  ....-..++++..+-+-.|+--+......+..++.+..|+++.+ +++++. .+.+.++++|..|.++++
T Consensus       181 ~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~  259 (418)
T KOG2982|consen  181 LPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSEN  259 (418)
T ss_pred             CCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCC
Confidence            33322110  01111235666666666655433333445566777778888888 555543 356778888888888888


Q ss_pred             cceeecc-------ccccCCcceEEecCCCcccccCchh
Q psy8551         514 AFTSFSE-------SMLAWPELRTIDIAENPIECGCNIL  545 (581)
Q Consensus       514 ~l~~l~~-------~~~~~~~L~~L~l~~np~~c~c~~~  545 (581)
                      .+..--.       -+..++.++.|+=+  .++.+-...
T Consensus       260 Pl~d~l~~~err~llIaRL~~v~vLNGs--kIss~er~d  296 (418)
T KOG2982|consen  260 PLSDPLRGGERRFLLIARLTKVQVLNGS--KISSRERKD  296 (418)
T ss_pred             cccccccCCcceEEEEeeccceEEecCc--ccchhhhhh
Confidence            7652111       13346667766544  665554433

>KOG4579|consensus

Probab=97.79  E-value=1.5e-06  Score=69.26  Aligned_cols=107  Identities=22%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             ccEEEcccCCcccccc---cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          47 IQRLVLSTNRIKTVDS---AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        47 l~~L~L~~~~i~~l~~---~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      +..++|+.+++.+++.   .+.....|+.++|++|.+...|...-..++..+.|++++|.                    
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne--------------------   88 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE--------------------   88 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh--------------------
Confidence            4455666666554443   33444556666666666666665444444455555555543                    


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceec
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL  178 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~  178 (581)
                         +.+++.. +..++.|+.|+++.|.+...+. .+..+.++-+|+..+|....+
T Consensus        89 ---isdvPeE-~Aam~aLr~lNl~~N~l~~~p~-vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen   89 ---ISDVPEE-LAAMPALRSLNLRFNPLNAEPR-VIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             ---hhhchHH-HhhhHHhhhcccccCccccchH-HHHHHHhHHHhcCCCCccccC
Confidence               3333333 5555666666666655555444 233355555555555544433

>smart00082 LRRCT Leucine rich repeat C-terminal domain

Probab=97.75  E-value=1.9e-05  Score=53.24  Aligned_cols=44  Identities=30%  Similarity=0.715  Sum_probs=36.8

Q ss_pred             CcccccCchhHHHHHHhhc----CCCceeeCCCcccccccccccCcccc
Q psy8551         536 NPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       536 np~~c~c~~~~~~~~~~~~----~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      |||.|+|.+.||++|.+..    ....+.|..|..++ .++.+++.+++
T Consensus         1 NP~~CdC~l~~~~~w~~~~~~~~~~~~~~C~~P~~~~-~~l~~~~~~~~   48 (51)
T smart00082        1 NPFICDCELRWLLRWLQANEHLQDPVSLRCASPSSLR-GPLLELLHSEF   48 (51)
T ss_pred             CCccCcCCchHHHHHHHhCCccCCCCCCEeCCcHHHH-hHHHcCCHhhC
Confidence            8999999999999999872    23367899999999 66888887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.61  E-value=7.3e-06  Score=73.27  Aligned_cols=146  Identities=18%  Similarity=0.227  Sum_probs=75.3

Q ss_pred             cCCCCCCcEEECCCCcCCccCc----cccCCCCCCCEEECCCCcccccCCc-------------ccCCCcccceeeecCC
Q psy8551         207 FRGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLEELEIGQNGFSMLEAG-------------CFKGLSYLKRLEITGA  269 (581)
Q Consensus       207 l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L~l~~~  269 (581)
                      +.+||+|+.+++++|.+..-.+    ..+++-+.|++|.+++|.+..+...             ...+-|.|+......|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            4456666666666665542111    2344455666666666655432211             1223345555555443


Q ss_pred             CCcee---ecCccCCCCCCCCEEeCCCCCCccc-----cccccccCCCCCcEEecCCCCCcc-----ccccccCCCCcce
Q psy8551         270 SNLTR---VRKGAFADNLNLETLTLNKNPKLKT-----IEEGALVGLPNLYHLNLKENAFTS-----FSESMLAWPELRT  336 (581)
Q Consensus       270 ~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~  336 (581)
                      ..-..   .....+....+|+.+.+..| .+..     +....+..+.+|+.|++++|.++.     +...+..|+.|++
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            21110   00111222245666666655 2221     111123456788888888887772     3345667788888


Q ss_pred             EEccCCCCccCCchhhH
Q psy8551         337 IDIAENPIECGCNILWL  353 (581)
Q Consensus       337 L~l~~~~~~~~~~~~~l  353 (581)
                      |.+.+|-++....-..+
T Consensus       247 L~lnDClls~~G~~~v~  263 (388)
T COG5238         247 LRLNDCLLSNEGVKSVL  263 (388)
T ss_pred             ccccchhhccccHHHHH
Confidence            88888877655444443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.59  E-value=0.0002  Score=69.92  Aligned_cols=117  Identities=17%  Similarity=0.265  Sum_probs=66.0

Q ss_pred             CCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCee
Q psy8551         404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL  483 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L  483 (581)
                      +..++.|++++|.++.+|  .  -.++|++|.++++.--...+..+  .++|++|++++|..+..++.       +|+.|
T Consensus        51 ~~~l~~L~Is~c~L~sLP--~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-------sLe~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP--V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-------SVRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCcccC--C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-------ccceE
Confidence            577778888877777665  1  12357777777653322223222  35677777777655544322       34444


Q ss_pred             eCCCCC--CceeecCCccC-----------------CC-CCccEEEcCCCcceeeccccccCCcceEEecCCC
Q psy8551         484 TLNKNP--KLKIIEEDALV-----------------GL-PNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN  536 (581)
Q Consensus       484 ~l~~~~--~l~~~~~~~~~-----------------~l-~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~n  536 (581)
                      ++..+.  .++.+|+. +.                 .+ ++|++|++++|....+|+.+.  .+|+.|+++.+
T Consensus       118 ~L~~n~~~~L~~LPss-Lk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        118 EIKGSATDSIKNVPNG-LTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             EeCCCCCcccccCcch-HhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            444321  12333211 10                 11 478888888888666665444  57888887765

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.54  E-value=3e-05  Score=69.44  Aligned_cols=84  Identities=18%  Similarity=0.213  Sum_probs=41.9

Q ss_pred             CCCCcEEEcCCCCccccCcc----ccCCCCCCcEEECCCCcCCcc-----CccccCCCCCCCEEECCCCcccccC----C
Q psy8551         186 LGRLSALDLRGAGLTNISDN----AFRGLSGLRSLVLTDNRLQSI-----PTKQLSKLTRLEELEIGQNGFSMLE----A  252 (581)
Q Consensus       186 l~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~----~  252 (581)
                      -|.|+++....|++...+..    .+..-..|+.+.+..|.|..-     ....+..+.+|+.|++..|.++...    .
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            35566666666665544331    122223566666666655421     1122334566666666666655322    1


Q ss_pred             cccCCCcccceeeecCC
Q psy8551         253 GCFKGLSYLKRLEITGA  269 (581)
Q Consensus       253 ~~~~~~~~L~~L~l~~~  269 (581)
                      ..+..++.|+.|.+..|
T Consensus       236 ~al~~W~~lrEL~lnDC  252 (388)
T COG5238         236 DALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHhcccchhhhccccch
Confidence            22344555666666554

>KOG3665|consensus

Probab=97.51  E-value=3.6e-05  Score=81.69  Aligned_cols=128  Identities=19%  Similarity=0.234  Sum_probs=82.6

Q ss_pred             CCCCCEEEcCCCcCCccC-hhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCe
Q psy8551         404 LSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET  482 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~  482 (581)
                      +|+|+.|.+.+-.+.... .....++|+|..|||++++++.+  .+++.+++|+.|.+.+-..-..-....+.++++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            789999999887664322 24567889999999999988877  567888888888887633222122223456788888


Q ss_pred             eeCCCCCCceee--c---CCccCCCCCccEEEcCCCccee--eccccccCCcceEEec
Q psy8551         483 LTLNKNPKLKII--E---EDALVGLPNLYHLNLKENAFTS--FSESMLAWPELRTIDI  533 (581)
Q Consensus       483 L~l~~~~~l~~~--~---~~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~l  533 (581)
                      ||+|.-.....-  .   .+.-..+|.|+.||.|++.+..  +...+...|+|+.+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence            888876333221  1   1122348888888888887762  2233334555555443

>KOG4579|consensus

Probab=97.48  E-value=3.6e-06  Score=67.18  Aligned_cols=135  Identities=21%  Similarity=0.237  Sum_probs=84.9

Q ss_pred             CCCEEEcCCCcCCccCh--hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCee
Q psy8551         406 GLRSLVLTDNRLQSIPT--KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL  483 (581)
Q Consensus       406 ~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L  483 (581)
                      .+..++++.|.+..+..  ..+.....|...+|++|.+...++..-..++.++.+++.+ +.+.+++.+ +..++.|+.|
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE-~Aam~aLr~l  105 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEE-LAAMPALRSL  105 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHH-HhhhHHhhhc
Confidence            35566777776654431  3445556666677777777777666555666677777765 566666544 6777777777


Q ss_pred             eCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCch
Q psy8551         484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNI  544 (581)
Q Consensus       484 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~  544 (581)
                      +++.|+ +... +..+..+.+|-+|+..+|.+..+|..+..-...-..++..+||...|+.
T Consensus       106 Nl~~N~-l~~~-p~vi~~L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNP-LNAE-PRVIAPLIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCc-cccc-hHHHHHHHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCcccccCcc
Confidence            777773 3333 2345557777788888887777775533222233344566788777764

>KOG3665|consensus

Probab=97.44  E-value=6.4e-05  Score=79.79  Aligned_cols=79  Identities=13%  Similarity=0.092  Sum_probs=35.2

Q ss_pred             CcccEEeCCCCCCCCcccccccCCc-ccccccCcccccccc---hhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551          92 EKLVELQLNHNKHFPQQIVCSIISP-RRVEIFGQNRISRID---QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE  167 (581)
Q Consensus        92 ~~L~~L~l~~n~~~~~~~~~~~~~~-~~L~~l~~~~l~~~~---~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  167 (581)
                      .+|++|++++...+..+.+..++.. ++|+.|..++..-..   .....++|+|++||+++.+++.+.  .+.++++|+.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~--GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS--GISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH--HHhccccHHH
Confidence            4688888888665544444433332 333322222211111   111234455555555554444441  3444444444


Q ss_pred             EECCC
Q psy8551         168 LRVGL  172 (581)
Q Consensus       168 L~L~~  172 (581)
                      |.+.+
T Consensus       200 L~mrn  204 (699)
T KOG3665|consen  200 LSMRN  204 (699)
T ss_pred             HhccC
Confidence            44443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.31  E-value=0.00041  Score=67.86  Aligned_cols=101  Identities=19%  Similarity=0.251  Sum_probs=73.3

Q ss_pred             hcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCC
Q psy8551         425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN  504 (581)
Q Consensus       425 l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~  504 (581)
                      +..+.++++|++++|.++.++    .-.++|++|.+.+|+.++.++. .+  .++|+.|++++|..+..+|       ++
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~-~L--P~nLe~L~Ls~Cs~L~sLP-------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPG-SI--PEGLEKLTVCHCPEISGLP-------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCc-hh--hhhhhheEccCcccccccc-------cc
Confidence            456789999999999888775    2345799999999998866643 33  2589999999997777665       35


Q ss_pred             ccEEEcCCCc---ceeeccccccC------------------CcceEEecCCCccc
Q psy8551         505 LYHLNLKENA---FTSFSESMLAW------------------PELRTIDIAENPIE  539 (581)
Q Consensus       505 L~~L~l~~n~---l~~l~~~~~~~------------------~~L~~L~l~~np~~  539 (581)
                      |+.|+++.+.   +..+|..+..+                  ++|++|++++|+..
T Consensus       114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI  169 (426)
T ss_pred             cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc
Confidence            7777776654   44565544322                  47889999887753

>KOG2123|consensus

Probab=97.12  E-value=1.3e-05  Score=71.91  Aligned_cols=101  Identities=26%  Similarity=0.296  Sum_probs=78.3

Q ss_pred             CCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecC-CccCCCCCCCe
Q psy8551         404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK-GAFADNLNLET  482 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~~L~~  482 (581)
                      +.+.++|+.++|.++++.  ....++.|+.|.|+-|+|+.+.+  +..|+.|++|+|.. |.+.++.. ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhh
Confidence            467889999999998875  36689999999999999998866  78999999999988 45555432 34677889999


Q ss_pred             eeCCCCCCceeecCC----ccCCCCCccEEE
Q psy8551         483 LTLNKNPKLKIIEED----ALVGLPNLYHLN  509 (581)
Q Consensus       483 L~l~~~~~l~~~~~~----~~~~l~~L~~L~  509 (581)
                      |.|..|+--+..+..    .+.-+|+|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998766655432    245578888876

>KOG3864|consensus

Probab=96.49  E-value=0.00016  Score=62.13  Aligned_cols=84  Identities=17%  Similarity=0.217  Sum_probs=52.1

Q ss_pred             CcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCC-CCCCCeeeCCCCCCceeecCCccCCCCCccEEE
Q psy8551         431 LEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD-NLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN  509 (581)
Q Consensus       431 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~  509 (581)
                      ++.++-+++.|...+-..+..+++++.|++.+|..+.+...+.+++ .++|+.|++++|+++++-...++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            4455555555555555555556666666666665555544333332 357777788877777777666677777777777


Q ss_pred             cCCCc
Q psy8551         510 LKENA  514 (581)
Q Consensus       510 l~~n~  514 (581)
                      +.+=+
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            77644

>KOG2123|consensus

Probab=96.21  E-value=0.00015  Score=65.43  Aligned_cols=78  Identities=23%  Similarity=0.326  Sum_probs=34.2

Q ss_pred             CCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc-cccCCCCCCcEEEC
Q psy8551         140 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVL  218 (581)
Q Consensus       140 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l  218 (581)
                      +.+.|++-+++++++.  ....++.|++|.|+-|+|+.+.+  +..|++|+.|.|+.|.+.++.. ..+.++++|+.|-|
T Consensus        20 ~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444555555554443  23344555555555555444432  4444444444444444443332 12233444444444


Q ss_pred             CCC
Q psy8551         219 TDN  221 (581)
Q Consensus       219 ~~n  221 (581)
                      ..|
T Consensus        96 ~EN   98 (388)
T KOG2123|consen   96 DEN   98 (388)
T ss_pred             ccC
Confidence            443

>KOG2739|consensus

Probab=96.10  E-value=0.0016  Score=58.61  Aligned_cols=106  Identities=22%  Similarity=0.268  Sum_probs=56.5

Q ss_pred             CCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC--cceeeccccccCCccccEEeecCCCCeeEe-cCCccCCCCCC
Q psy8551         404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN--GFSMLEAGCFKGLSYLKRLEITGASNLTRV-RKGAFADNLNL  480 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~--~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~L  480 (581)
                      +..|+.|.+.+..++.+.  .+..+++|++|.++.|  .+..-.......+++|+++++++|. +..+ .......+++|
T Consensus        42 ~~~le~ls~~n~gltt~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhhcch
Confidence            445666666666666553  4667778888888887  4443323233455777777777743 2221 11123445566


Q ss_pred             CeeeCCCCCCceeec---CCccCCCCCccEEEcCCC
Q psy8551         481 ETLTLNKNPKLKIIE---EDALVGLPNLYHLNLKEN  513 (581)
Q Consensus       481 ~~L~l~~~~~l~~~~---~~~~~~l~~L~~L~l~~n  513 (581)
                      ..|++.+|.... +.   ...|.-+++|++|+-...
T Consensus       119 ~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccc-cccHHHHHHHHhhhhcccccccc
Confidence            666666663222 21   112344566666654443

>KOG2739|consensus

Probab=95.93  E-value=0.0037  Score=56.36  Aligned_cols=58  Identities=24%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             CCCCcEEEcCCCCccccCc-cccCCCCCCcEEECCCCcCCccCc---cccCCCCCCCEEECC
Q psy8551         186 LGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPT---KQLSKLTRLEELEIG  243 (581)
Q Consensus       186 l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  243 (581)
                      +++|+++++++|++..+.. ..+..+.+|..|++.+|..+....   ..|.-+++|++|+-.
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            3555555555554442111 113334455555555554443221   223445556555543

>KOG1947|consensus

Probab=95.84  E-value=0.0018  Score=67.49  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=19.5

Q ss_pred             CCCCcEEECCCC-cCCccC-ccccCCCCCCCEEECCC
Q psy8551         210 LSGLRSLVLTDN-RLQSIP-TKQLSKLTRLEELEIGQ  244 (581)
Q Consensus       210 ~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~  244 (581)
                      ++.|+.+.+..+ .+.... ......++.|++|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            566777766654 233211 12345567777777765

>KOG1947|consensus

Probab=95.82  E-value=0.0024  Score=66.67  Aligned_cols=36  Identities=33%  Similarity=0.400  Sum_probs=16.0

Q ss_pred             CcccceeeecCCCCceeec-CccCCCCCCCCEEeCCC
Q psy8551         258 LSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNK  293 (581)
Q Consensus       258 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~  293 (581)
                      ++.|+.+.+.++..+.... ......++.|+.++++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            4555555555544443321 11223344555555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.80  E-value=0.0055  Score=32.54  Aligned_cols=19  Identities=42%  Similarity=0.492  Sum_probs=12.4

Q ss_pred             CccEEEcCCCcceeecccc
Q psy8551         504 NLYHLNLKENAFTSFSESM  522 (581)
Q Consensus       504 ~L~~L~l~~n~l~~l~~~~  522 (581)
                      +|++|++++|+++.+|..+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSSEESEEGTTT
T ss_pred             CccEEECCCCcCEeCChhh
Confidence            4667777777777666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.59  E-value=0.0069  Score=32.17  Aligned_cols=16  Identities=38%  Similarity=0.455  Sum_probs=8.5

Q ss_pred             ccEEEcCCCceeecCC
Q psy8551          70 LQHVDLSHTTWLIIPI   85 (581)
Q Consensus        70 L~~L~ls~~~l~~~~~   85 (581)
                      |++||+++|+++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4555555555555554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.52  E-value=0.008  Score=29.56  Aligned_cols=17  Identities=47%  Similarity=0.722  Sum_probs=8.4

Q ss_pred             CCccEEEcCCCcceeec
Q psy8551         503 PNLYHLNLKENAFTSFS  519 (581)
Q Consensus       503 ~~L~~L~l~~n~l~~l~  519 (581)
                      ++|+.|++++|+|+.+|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            35667777777666654

...

>smart00013 LRRNT Leucine rich repeat N-terminal domain

Probab=95.43  E-value=0.0091  Score=35.51  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=27.7

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCcc
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQ   48 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~   48 (581)
                      +||..|.|..   ..+.|  ++.+++.||..+|.+.+
T Consensus         1 ~CP~~C~C~~---~~V~C--~~~~L~~vP~~iP~~t~   32 (33)
T smart00013        1 ACPAPCNCSG---TAVDC--SGRGLTEVPLDLPPDTT   32 (33)
T ss_pred             CcCCCCEECC---CEeEe--CCCCcCccCCCCCcccc
Confidence            5999999985   78999  99999999999886543

>PF01462 LRRNT: Leucine rich repeat N-terminal domain; InterPro: IPR000372 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.22  E-value=0.005  Score=34.95  Aligned_cols=28  Identities=25%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCccCCCCCC
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSN   44 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~   44 (581)
                      +||..|.|..   .++.|  ++.++++||..+|
T Consensus         1 ~CP~~C~C~~---~~V~C--~~~~L~~vP~~lP   28 (28)
T PF01462_consen    1 ACPRPCTCSG---LTVDC--SGRGLTAVPSDLP   28 (28)
T ss_dssp             SSETTSEEET---TEEEE--TTSS-SSS-STS-
T ss_pred             CcCCCCEecC---CEeEC--CCCCCCccCCCCc
Confidence            5899999996   88999  9999999998765

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain and a C-terminal LRR domain (IPR000483 from INTERPRO). This entry represents the N-terminal LRR domain. ; PDB: 3E6J_A 1W8A_A 2V9S_C 2V9T_B 3TWI_D 3ZYN_A 3ZYO_A 1OOK_G 1QYY_G 1SQ0_B ....

>KOG3864|consensus

Probab=94.43  E-value=0.0041  Score=53.77  Aligned_cols=84  Identities=17%  Similarity=0.206  Sum_probs=63.8

Q ss_pred             CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCc-ceeeccccc-cCCccccEEeecCCCCeeEecCCccCCCCCCCee
Q psy8551         406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEAGCF-KGLSYLKRLEITGASNLTRVRKGAFADNLNLETL  483 (581)
Q Consensus       406 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L  483 (581)
                      .++.++-+++.+.....+.+..++.++.|.+.+|. +.+.....+ ...++|+.|++++|+.+++-+-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            36778888888887777788888888888887763 333222222 2467899999999999998888888888899998


Q ss_pred             eCCCCC
Q psy8551         484 TLNKNP  489 (581)
Q Consensus       484 ~l~~~~  489 (581)
                      ++.+-+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            888653

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.70  E-value=0.047  Score=26.78  Aligned_cols=15  Identities=33%  Similarity=0.612  Sum_probs=6.1

Q ss_pred             CccEEEcccCCcccc
Q psy8551          46 SIQRLVLSTNRIKTV   60 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l   60 (581)
                      +|+.|+|++|+++.+
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            455555555555444

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.40  E-value=0.092  Score=29.12  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=16.1

Q ss_pred             CCCccEEEcCCCcceeeccccc
Q psy8551         502 LPNLYHLNLKENAFTSFSESML  523 (581)
Q Consensus       502 l~~L~~L~l~~n~l~~l~~~~~  523 (581)
                      +++|++|++++|.|+.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4577888888888888776543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.40  E-value=0.092  Score=29.12  Aligned_cols=22  Identities=36%  Similarity=0.638  Sum_probs=16.1

Q ss_pred             CCCccEEEcCCCcceeeccccc
Q psy8551         502 LPNLYHLNLKENAFTSFSESML  523 (581)
Q Consensus       502 l~~L~~L~l~~n~l~~l~~~~~  523 (581)
                      +++|++|++++|.|+.+|....
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            4577888888888888776543

>TIGR00864 PCC polycystin cation channel protein

Probab=92.31  E-value=0.18  Score=60.67  Aligned_cols=79  Identities=24%  Similarity=0.503  Sum_probs=63.0

Q ss_pred             ecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC-----CceeecCCCcccccccccCCcccccc
Q psy8551         315 NLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCNSPAPLKYKSLISLSAEDLGC  388 (581)
Q Consensus       315 ~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~  388 (581)
                      ||++|.|+.++. .|..+++|+.|+|.+|++.|+|.+.|+..+......     ....|..|..++...+..+...++.|
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~WL~~WL~~~~v~v~~~~~i~CasP~~LrG~~L~~l~~~d~~C   80 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLARLPRWAEEKGVKVRQPEAALCAGPGALAGQPLLGIPLLDSGC   80 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHHHHHHHHhcCccccCCcccCCCCChHHCCCCcccCCcccCCC
Confidence            578999998886 566788999999999999999999999888766642     24569999988888888887777666


Q ss_pred             CCCCc
Q psy8551         389 AGAGL  393 (581)
Q Consensus       389 ~~~~~  393 (581)
                      ....+
T Consensus        81 ~~~y~   85 (2740)
T TIGR00864        81 DEEYV   85 (2740)
T ss_pred             CCcce
Confidence            54443

Note: this model has been restricted to the amino half because for technical reasons.

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.98  E-value=0.086  Score=29.24  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=14.0

Q ss_pred             CcccEEEcCCCceeecCCCCCC
Q psy8551          68 LSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        68 ~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      ++|++|+|++|+|+.++..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4666777777777666655443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.98  E-value=0.086  Score=29.24  Aligned_cols=22  Identities=32%  Similarity=0.575  Sum_probs=14.0

Q ss_pred             CcccEEEcCCCceeecCCCCCC
Q psy8551          68 LSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        68 ~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      ++|++|+|++|+|+.++..+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            4666777777777666655443

>PF01463 LRRCT: Leucine rich repeat C-terminal domain; InterPro: IPR000483 Leucine-rich repeats (LRR, see IPR001611 from INTERPRO) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=87.23  E-value=0.31  Score=26.72  Aligned_cols=21  Identities=33%  Similarity=0.630  Sum_probs=17.9

Q ss_pred             eeeCCCcccccccccccCcccc
Q psy8551         559 VFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       559 ~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      .+|+.|..++| ++.++.++|+
T Consensus         2 ~~Ca~P~~lrg-~l~~~~~~~f   22 (25)
T PF01463_consen    2 ARCASPPELRG-PLLDLPPSDF   22 (25)
T ss_dssp             -BEEESGGGTT-BGGGSSGGG-
T ss_pred             CccCCChHHcC-cHhhCCcccC
Confidence            57999999999 9999998875

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions []. Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response. LRRs are often flanked by cysteine-rich domains: an N-terminal LRR domain (IPR000372 from INTERPRO) and a C-terminal LRR domain. This entry represents the C-terminal LRR domain. ; PDB: 3RFE_B 3REZ_D 2WFH_A 2V70_B 2V9S_C 2V9T_B 1W8A_A.

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.52  E-value=0.41  Score=26.37  Aligned_cols=18  Identities=44%  Similarity=0.698  Sum_probs=15.0

Q ss_pred             CCccEEEcCCCcceeecc
Q psy8551         503 PNLYHLNLKENAFTSFSE  520 (581)
Q Consensus       503 ~~L~~L~l~~n~l~~l~~  520 (581)
                      ++|++|++++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468888999999888886

>KOG4308|consensus

Probab=82.93  E-value=0.0063  Score=62.03  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=23.8

Q ss_pred             CCccEEEcCCCcce-----eeccccccCCcceEEecCCCccc
Q psy8551         503 PNLYHLNLKENAFT-----SFSESMLAWPELRTIDIAENPIE  539 (581)
Q Consensus       503 ~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~l~~np~~  539 (581)
                      ..++.++++.|+++     .+.+.+..++.++++.++.|++.
T Consensus       262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            45667777777665     24455556667777777777764

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.78  E-value=0.97  Score=24.32  Aligned_cols=14  Identities=50%  Similarity=0.731  Sum_probs=5.7

Q ss_pred             CCccEEEcCCCcce
Q psy8551         503 PNLYHLNLKENAFT  516 (581)
Q Consensus       503 ~~L~~L~l~~n~l~  516 (581)
                      ++|++|+|++|.|+
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34455555555443

...

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=80.77  E-value=1.4  Score=24.46  Aligned_cols=17  Identities=29%  Similarity=0.348  Sum_probs=11.2

Q ss_pred             CcccEEEcCCCceeecC
Q psy8551          68 LSLQHVDLSHTTWLIIP   84 (581)
Q Consensus        68 ~~L~~L~ls~~~l~~~~   84 (581)
                      ++|+.|+++.|+|+.+.
T Consensus         2 ~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        2 TNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CccCEEECCCCccceec
Confidence            56777777777766544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	581
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		1e-24
3zyn_A	321	Crystal Structure Of The N-Terminal Leucine Rich Re		5e-16
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		2e-24
3zyo_A	411	Crystal Structure Of The N-Terminal Leucine Rich Re		7e-16
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		3e-23
3zyj_A	440	Netring1 In Complex With Ngl1 Length = 440		1e-14
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-23
3zyi_A	452	Netring2 In Complex With Ngl2 Length = 452		5e-14
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-19
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		1e-08
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-16
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		7e-12
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		9e-08
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		1e-13
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		5e-13
3cig_A	697	Crystal Structure Of Mouse Tlr3 Ectodomain Length =		1e-13
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		1e-12
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		8e-08
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-12
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		5e-06
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		2e-05
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		8e-04
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		4e-12
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		5e-11
1ozn_A	285	1.5a Crystal Structure Of The Nogo Receptor Ligand		8e-08
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		4e-12
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		5e-11
1p8t_A	285	Crystal Structure Of Nogo-66 Receptor Length = 285		8e-08
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-12
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		1e-07
3v47_A	455	Crystal Structure Of The N-Tetminal Fragment Of Zeb		6e-12
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-11
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-07
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		1e-11
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		3e-08
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		1e-11
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		8e-06
1xcd_A	329	Dimeric Bovine Tissue-Extracted Decorin, Crystal Fo		8e-04
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		1e-11
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		9e-06
1xku_A	330	Crystal Structure Of The Dimeric Protein Core Of De		9e-04
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		1e-10
2v70_A	220	Third Lrr Domain Of Human Slit2 Length = 220		6e-05
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		6e-10
3e6j_A	229	Crystal Structure Of Variable Lymphocyte Receptor (		1e-04
3v44_A	407	Crystal Structure Of The N-Terminal Fragment Of Zeb		1e-09
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		2e-09
2v9s_A	220	Second Lrr Domain Of Human Slit2 Length = 220		6e-09
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		2e-09
2v9t_B	220	Complex Between The Second Lrr Domain Of Slit2 And		6e-09
2ft3_A	332	Crystal Structure Of The Biglycan Dimer Core Protei		3e-09
3ulu_A	694	Structure Of Quaternary Complex Of Human Tlr3ecd Wi		8e-09
2a0z_A	705	The Molecular Structure Of Toll-like Receptor 3 Lig		8e-09
1ziw_A	680	Human Toll-Like Receptor 3 Extracellular Domain Str		9e-09
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		1e-08
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		3e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		6e-08
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-07
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		3e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-07
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		1e-05
2z62_A	276	Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 A		8e-07
3ula_A	279	Crystal Structure Of The Tv3 Mutant F63w-Md-2-Erito		1e-06
3ul7_A	278	Crystal Structure Of The Tv3 Mutant F63w Length = 2		1e-06
3ul9_A	278	Structure Of The Tv3 Mutant M41e Length = 278		1e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		1e-06
1w8a_A	192	Third Lrr Domain Of Drosophila Slit Length = 192		5e-06
3ul8_A	279	Crystal Structure Of The Tv3 Mutant V134l Length =		2e-06
3j0a_A	844	Homology Model Of Human Toll-Like Receptor 5 Fitted		3e-06
4g8a_A	635	Crystal Structure Of Human Tlr4 Polymorphic Variant		3e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		3e-06
2z63_A	570	Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A		5e-04
3fxi_A	605	Crystal Structure Of The Human Tlr4-Human Md-2-E.Co		4e-06
3o6n_A	390	Crystal Structure Of Apl1 Leucine-Rich Repeat Domai		4e-06
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		1e-05
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		5e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		1e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-05
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		2e-04
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		1e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-05
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		2e-04
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		1e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-05
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-04
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		1e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-05
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-04
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-05
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		1e-04
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		2e-05
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-05
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-04
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		2e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		2e-05
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		8e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		2e-05
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-04
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		2e-04
3oja_B	597	Crystal Structure Of Lrim1APL1C COMPLEX Length = 59		2e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-05
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-04
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		2e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-05
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-04
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		2e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		2e-05
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		6e-05
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		6e-05
3g3b_A	170	Structure Of A Lamprey Variable Lymphocyte Receptor		5e-04
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		5e-04

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 125/283 (44%), Gaps = 36/283 (12%)
Query: 117 RRVEIF--GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
           R +EI    +N + +I+   F GL +L  L L DN+L +VPT +F YL  L EL +  N 
Sbjct: 59  RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 175 FTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
             ++   AFN +  L  LDL     L  IS+ AF GL  LR L L    L+ IP   L+ 
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTA 176
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
           L RLEELE+  N   ++  G F+GL+ L++L +  A   T                    
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT-------------------- 216
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL- 351
                 IE  A   L +L  LNL  N   S    +      L  + +  NP  C C++L 
Sbjct: 217 ------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLW 270
Query: 352 ---WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
              WL+E +    T    C++PA LK + +  L      C   
Sbjct: 271 LSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTCYAG 313

>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats Of Netrin-G Ligand-3 Length = 321

Iteration: 1
 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 130/335 (38%), Gaps = 84/335 (25%)
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXX 299
           L + +N   ++    FK L +L+ L++  + NL R                         
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQL--SKNLVR------------------------K 73
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
           IE GA  GLP+L  L L +N  T+       +  +LR + +  NPIE             
Sbjct: 74  IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE------------- 120
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
                     S     +  + SL   DLG     L  IS+ AF GL  LR L L    L+
Sbjct: 121 ----------SIPSYAFNRVPSLRRLDLG-ELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
            IP   L+ L RLEELE+  N   ++  G F+GL+ L++L +  A   T           
Sbjct: 170 DIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT----------- 216
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
                          IE +A   L +L  LNL  N   S    +      L  + +  NP
Sbjct: 217 ---------------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Query: 538 IECGCNIL----WLREMLVRRNTSAVFCNSPAPLK 568
             C C++L    WL+E +    T    C++PA LK
Sbjct: 262 WHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLK 296

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 125/280 (44%), Gaps = 36/280 (12%)
Query: 117 RRVEIF--GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
           R +EI    +N + +I+   F GL +L  L L DN+L +VPT +F YL  L EL +  N 
Sbjct: 59  RHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP 118
Query: 175 FTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
             ++   AFN +  L  LDL     L  IS+ AF GL  LR L L    L+ IP   L+ 
Sbjct: 119 IESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIP--NLTA 176
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
           L RLEELE+  N   ++  G F+GL+ L++L +  A   T                    
Sbjct: 177 LVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT-------------------- 216
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNIL- 351
                 IE  A   L +L  LNL  N   S    +      L  + +  NP  C C++L 
Sbjct: 217 ------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLW 270
Query: 352 ---WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
              WL+E +    T    C++PA LK + +  L      C
Sbjct: 271 LSWWLKETVPSNTTCCARCHAPAGLKGRYIGELDQSHFTC 310

>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats And Immunoglobulin Domain Of Netrin-G Ligand-3 Length = 411

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 130/335 (38%), Gaps = 84/335 (25%)
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXX 299
           L + +N   ++    FK L +L+ L++  + NL R                         
Sbjct: 40  LNLQENSIQVIRTDTFKHLRHLEILQL--SKNLVR------------------------K 73
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
           IE GA  GLP+L  L L +N  T+       +  +LR + +  NPIE             
Sbjct: 74  IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIE------------- 120
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
                     S     +  + SL   DLG     L  IS+ AF GL  LR L L    L+
Sbjct: 121 ----------SIPSYAFNRVPSLRRLDLG-ELKRLEYISEAAFEGLVNLRYLNLGMCNLK 169
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
            IP   L+ L RLEELE+  N   ++  G F+GL+ L++L +  A   T           
Sbjct: 170 DIP--NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVAT----------- 216
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
                          IE +A   L +L  LNL  N   S    +      L  + +  NP
Sbjct: 217 ---------------IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Query: 538 IECGCNIL----WLREMLVRRNTSAVFCNSPAPLK 568
             C C++L    WL+E +    T    C++PA LK
Sbjct: 262 WHCNCDVLWLSWWLKETVPSNTTCCARCHAPAGLK 296

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 122/280 (43%), Gaps = 36/280 (12%)
Query: 117 RRVEIF--GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
           R +EI    +N I  I+   F GL  L  L L DN+L ++P  +F+YL  L EL +  N 
Sbjct: 88  RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP 147
Query: 175 FTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
             ++   AFN +  L  LDL     L+ IS+ AF GLS LR L L    L+ IP   L+ 
Sbjct: 148 IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTP 205
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
           L +L+EL++  N  S +  G F+GL +L++L +  +                        
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ----------------------- 242
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILW 352
                 IE  A   L +L  +NL  N  T     +      L  I +  NP  C C+ILW
Sbjct: 243 ---IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILW 299
Query: 353 L----REMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
           L    ++M          CN+P  LK + +  L      C
Sbjct: 300 LSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTC 339

>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1 Length = 440

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 110/275 (40%), Gaps = 58/275 (21%)
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
           IE GA  GL NL  L L +N  T+       +  +L+ + +  NPIE             
Sbjct: 103 IEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE------------- 149
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
                     S     +  + SL   DLG     L+ IS+ AF GLS LR L L    L+
Sbjct: 150 ----------SIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
            IP   L+ L +L+EL++  N  S +  G F+GL +L++L +  +               
Sbjct: 199 EIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-------------- 242
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENP 537
                         +IE +A   L +L  +NL  N  T     +      L  I +  NP
Sbjct: 243 ------------IQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290
Query: 538 IECGCNILWL----REMLVRRNTSAVFCNSPAPLK 568
             C C+ILWL    ++M          CN+P  LK
Sbjct: 291 WNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLK 325

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score =  105 bits (263), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 122/276 (44%), Gaps = 36/276 (13%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
            G+N I +I+   F GL +L  L L DN L  +P+ +F YL  L EL +  N   ++   
Sbjct: 106 LGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY 165
Query: 182 AFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
           AFN +  L  LDL     L  IS+ AF GL  L+ L L    ++ +P   L+ L  LEEL
Sbjct: 166 AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEEL 223
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
           E+  N F  +  G F GLS LK+L +  +                              I
Sbjct: 224 EMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ--------------------------VSLI 257
Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWP--ELRTIDIAENPIECGCNIL----WLR 354
           E  A  GL +L  LNL  N  +S    +   P   L  + +  NP  C C+IL    WLR
Sbjct: 258 ERNAFDGLASLVELNLAHNNLSSLPHDLFT-PLRYLVELHLHHNPWNCDCDILWLAWWLR 316
Query: 355 EMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
           E +   +T    C++P  ++ + L+ +      C+ 
Sbjct: 317 EYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSA 352

>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2 Length = 452

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/343 (25%), Positives = 135/343 (39%), Gaps = 86/343 (25%)
Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXX 299
           L + +N   M++A  F+ L +L+ L++   S    +R+                      
Sbjct: 80  LNLMENNIQMIQADTFRHLHHLEVLQLGRNS----IRQ---------------------- 113
Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
           IE GA  GL +L  L L +N  T        +  +LR + +  NPIE             
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE------------- 160
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
                     S     +  + SL   DLG     L  IS+ AF GL  L+ L L    ++
Sbjct: 161 ----------SIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209
Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 478
            +P   L+ L  LEELE+  N F  +  G F GLS LK+L +  +               
Sbjct: 210 DMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-------------- 253
Query: 479 XXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP--ELRTIDIAEN 536
                         +IE +A  GL +L  LNL  N  +S    +   P   L  + +  N
Sbjct: 254 ------------VSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT-PLRYLVELHLHHN 300
Query: 537 PIECGCNIL----WLREMLVRRNTSAVFCNSPAPLKYKSLISL 575
           P  C C+IL    WLRE +   +T    C++P  ++ + L+ +
Sbjct: 301 PWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEV 343

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 94.4 bits (233), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 122/282 (43%), Gaps = 32/282 (11%)
Query: 115 SPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
           S +R+ + G NRIS +  A F+    L IL+L  N L  +   +F  L +L +L +  N 
Sbjct: 32  SSQRIFLHG-NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 175 FTTLAD-GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 233
              + D   F GLG L  L L   GL  +    FRGL+ L+ L L DN LQ++P      
Sbjct: 91  QLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRD 150
Query: 234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXX 293
           L  L  L +  N    +    F+GL  L RL +   +++ RV   AF D           
Sbjct: 151 LGNLTHLFLHGNRIPSVPEHAFRGLHSLDRL-LLHQNHVARVHPHAFRD----------- 198
Query: 294 XXXXXXIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNI-- 350
                         L  L  L L  N  +   +E ++    L+ + + +NP  C C    
Sbjct: 199 --------------LGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARP 244
Query: 351 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL-GCAGA 391
           LW      R ++S V CN P  L  + L  L+A DL GCA A
Sbjct: 245 LWAWLQKFRGSSSEVPCNLPQRLAGRDLKRLAASDLEGCAVA 286

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
           GL  +    FRGL+ L+ L L DN LQ++P      L  L  L +  N    +    F+G
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 452 LSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLK 511
           L  L RL +   +++ RV   AF D                         L  L  L L 
Sbjct: 175 LHSLDRL-LLHQNHVARVHPHAFRD-------------------------LGRLMTLYLF 208
Query: 512 ENAFTSF-SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLK 568
            N  +   +E ++    L+ + + +NP  C C    LW      R ++S V CN P  L 
Sbjct: 209 ANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCNLPQRLA 268
Query: 569 YKSLISLSAEDL 580
            + L  L+A DL
Sbjct: 269 GRDLKRLAASDL 280

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 80/156 (51%), Gaps = 1/156 (0%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N++S +    F  LT LR+LYL+DN+L+++P   F  L  L  L V  N    L  G F+
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD 106
Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
            L  L+ L L    L ++    F  L+ L  L L  N LQS+P     KLT L+EL +  
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN 166
Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 280
           N    +  G F  L+ LK L++   + L RV +GAF
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDN-NQLKRVPEGAF 201

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 26/220 (11%)
Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
           + L L  N+L S+P+ +F  L  L  L +  N   TL  G F  L  L  L +    L  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           +    F  L  L  L L  N+L+S+P +    LT+L  L +G N    L  G F  L+ L
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSL 159
Query: 262 KRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAF 321
           K L +   + L RV +GAF                   + E   + L N     + E AF
Sbjct: 160 KELRLYN-NQLKRVPEGAF-----------------DKLTELKTLKLDNNQLKRVPEGAF 201
Query: 322 TSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRR 360
            S  +       L+ + + ENP +C CN I+++ + L ++
Sbjct: 202 DSLEK-------LKMLQLQENPWDCTCNGIIYMAKWLKKK 234

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 55.1 bits (131), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/234 (24%), Positives = 86/234 (36%), Gaps = 36/234 (15%)
Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
           C CN           N ++V C+S       S I    + L      L+++   AF  L+
Sbjct: 12  CSCN----------NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLT 61
Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT---- 461
            LR L L DN+LQ++P     +L  LE L +  N    L  G F  L  L  L +     
Sbjct: 62  KLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 462 -------------------GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGL 502
                              G + L  + KG F D                 + E A   L
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 503 PNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCN-ILWLREMLVRR 554
             L  L L  N      E    +  +L+ + + ENP +C CN I+++ + L ++
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKK 234

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 140/335 (41%), Gaps = 35/335 (10%)
Query: 43  SNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
           S P ++ L L+ N +  V+  A     +L+ + L      +IP+G F     L +L ++ 
Sbjct: 54  SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113
Query: 102 NKH--FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
           NK       +   + + + +E+ G N +  I    F GL +L  L L+   L S+PT + 
Sbjct: 114 NKIVILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL-RGAGLTNISDNAFRGLSGLRSLVL 218
            +L  L  LR+       + D +F  L RL  L++     L  ++ N   GL+ L SL +
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSI 231
Query: 219 TDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG 278
           T   L ++P   +  L  L  L +  N  S +E      L  L+ +++ G         G
Sbjct: 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG---------G 282
Query: 279 AFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML-AWPELRTI 337
             A                  +E  A  GL  L  LN+  N  T+  ES+  +   L T+
Sbjct: 283 QLA-----------------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETL 325
Query: 338 DIAENPIECGCNILWL--REMLVRRNTSAVFCNSP 370
            +  NP+ C C +LW+  R   +  N     C +P
Sbjct: 326 ILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 153/400 (38%), Gaps = 79/400 (19%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           L +G N   TL    F     L  L+L    ++ +   AF  L  LR+L L  NRL+ IP
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
               + L+ L +L+I +N   +L    F+ L  LK LE+ G ++L  +   AF+      
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV-GDNDLVYISHRAFS------ 149
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
                              GL +L  L L++   TS     L+                G
Sbjct: 150 -------------------GLNSLEQLTLEKCNLTSIPTEALSHLH-------------G 177
Query: 348 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL 407
             +L LR + +         N+     +K L  L   ++      L  ++ N   GL+ L
Sbjct: 178 LIVLRLRHLNI---------NAIRDYSFKRLYRLKVLEIS-HWPYLDTMTPNCLYGLN-L 226
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
            SL +T   L ++P   +  L  L  L +  N  S +E      L  L+ +++ G     
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG----- 281
Query: 468 RVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML-AWP 526
               G  A                 ++E  A  GL  L  LN+  N  T+  ES+  +  
Sbjct: 282 ----GQLA-----------------VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320
Query: 527 ELRTIDIAENPIECGCNILWL--REMLVRRNTSAVFCNSP 564
            L T+ +  NP+ C C +LW+  R   +  N     C +P
Sbjct: 321 NLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360

>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain Length = 697

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 125/532 (23%), Positives = 205/532 (38%), Gaps = 85/532 (15%)
Query: 69  SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH---NKHFPQQIVCSIISPRRVE--IFG 123
           SL+ +DLS         G F+   KL  L LN+   N H  +++ C  +S   ++     
Sbjct: 172 SLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKL-CWELSNTSIQNLSLA 230
Query: 124 QNRISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
            N++    ++ F GL  T L  L L  N L  V   SF YL  L  L +  N    L+  
Sbjct: 231 NNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPR 290
Query: 182 AFNGLGRLSALDLRGA---------GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
           +F GL  L  L L+ A            NI D +F+ L  L  L + DN + S  +   +
Sbjct: 291 SFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSNTFT 350
Query: 233 KLTRLEELEIGQNGFSM--LEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADXXXXXXX 289
            L  L+ L + +   S+  L    F  L++   L +    N ++++  G F+        
Sbjct: 351 GLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTFSWLGQLRIL 410
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
                     +      GL N++ + L  N +   S S  A                   
Sbjct: 411 DLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFAL------------------ 452
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
           +  L+ +++RR        SP+P  ++ L +L+  DL  +   + NI+++   GL  L  
Sbjct: 453 VPSLQRLMLRRVALKNVDISPSP--FRPLRNLTILDL--SNNNIANINEDLLEGLENLEI 508
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
           L    N L  +        P   L  L+ L  L +  NG   +  G FK L  LK + + 
Sbjct: 509 LDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVGVFKNLFELKSINLG 568
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
             + L ++    F D                           +L  LNL++N  TS  + 
Sbjct: 569 LNN-LNKLEPFIFDDQT-------------------------SLRSLNLQKNLITSVEKD 602
Query: 522 MLAWP--ELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
           +   P   L ++D+  NP +C C +I W    + + +T      +   CN+P
Sbjct: 603 VFGPPFQNLNSLDMRFNPFDCTCESISWFVNWINQTHTNISELSTHYLCNTP 654

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 98  QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQAC-----------FEGLTALRILYL 146
           Q+  +  F + I  ++      +   QN ++ IDQ              + L  +R L L
Sbjct: 11  QIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             N+L  +   +   L  L  L +  N   +L +G F+ L  L  L L    L ++ D  
Sbjct: 71  GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           F  L+ L  L L  N+LQS+P     KLT L EL++  N    L  G F  L+ LK L +
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 267 TGASNLTRVRKGAF 280
              + L  V  G F
Sbjct: 189 Y-QNQLKSVPDGVF 201

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 54/180 (30%), Positives = 78/180 (43%), Gaps = 8/180 (4%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
           L   G  L +IS  A + L+ L  L+LT N+LQS+P     KLT L+EL + +N    L 
Sbjct: 68  LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
            G F  L+ L  L +   + L  + KG F D                 + E     L  L
Sbjct: 126 DGVFDKLTNLTYLNL-AHNQLQSLPKGVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRRNTSAVFCNS 563
             L L +N   S  + +      L+ I + +NP +C C  I +L E + +   S V  NS
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH--SGVVRNS 241

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 81/161 (50%), Gaps = 11/161 (6%)
Query: 106 PQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD--DNQLRSVPTPSFIYLG 163
           P +  CS  +   VE + Q R S        G+ A +  YLD   N L+S+P   F  L 
Sbjct: 2   PSRCSCSGTT---VECYSQGRTSVP-----TGIPA-QTTYLDLETNSLKSLPNGVFDELT 52
Query: 164 MLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL 223
            L +L +G N   +L +G FN L  L+ L+L    L ++ +  F  L+ L+ L L  N+L
Sbjct: 53  SLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL 112
Query: 224 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
           QS+P     KLT+L++L + QN    +  G F  L+ L+ +
Sbjct: 113 QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI 153

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 84/208 (40%), Gaps = 38/208 (18%)
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
            + + LDL    L ++ +  F  L+ L  L L  N+LQS+P    +KLT L  L +  N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALV 306
              L  G F  L+ LK L +    N  +++                       + +G   
Sbjct: 88  LQSLPNGVFDKLTQLKELAL----NTNQLQS----------------------LPDGVFD 121
Query: 307 GLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRRNTSA 364
            L  L  L L +N   S  + +      L+ I + +NP +C C  I +L E + +   S 
Sbjct: 122 KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKH--SG 179
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAG 392
           V  NS          S++ +   C+G+G
Sbjct: 180 VVRNSAG--------SVAPDSAKCSGSG 199

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
           +  L SL+   LG  G  L ++ +  F  L+ L  L L+ N+LQS+P     KLT+L+EL
Sbjct: 48  FDELTSLTQLYLG--GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105
Query: 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
            +  N    L  G F  L+ LK L +   + L  V  G F
Sbjct: 106 ALNTNQLQSLPDGVFDKLTQLKDLRLY-QNQLKSVPDGVF 144

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 28/165 (16%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           L ++ +  F  L+ L  L L  N+LQS+P    +KLT L  L +  N    L  G F  L
Sbjct: 40  LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99
Query: 453 SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKE 512
           + LK L +   + L  +  G F                           L  L  L L +
Sbjct: 100 TQLKELALN-TNQLQSLPDGVFDK-------------------------LTQLKDLRLYQ 133
Query: 513 NAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRRN 555
           N   S  + +      L+ I + +NP +C C  I +L E + + +
Sbjct: 134 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHS 178

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 17  YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDL 75
           Y   + +T  P   LQ   +  IP+ S    QR+ L  NRI  V +A      +L  + L
Sbjct: 9   YNEPKVTTSCPQQGLQAVPVG-IPAAS----QRIFLHGNRISHVPAASFRACRNLTILWL 63
Query: 76  SHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR--ISRIDQA 133
                  I    F     L +L L+ N         +     R+     +R  +  +   
Sbjct: 64  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123
Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 193
            F GL AL+ LYL DN L+++P  +F  LG L  L +  N  +++ + AF GL  L  L 
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           L    + ++  +AFR L  L +L L  N L ++PT+ L+ L  L+ L +  N +
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 86/211 (40%), Gaps = 31/211 (14%)
Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTA 140
           +P+G      + + L  N   H P     S  + R + I     N ++RID A F GL  
Sbjct: 26  VPVG-IPAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81
Query: 141 LRILYLDDN-QLRSVPTPSFIYLGMLAEL---RVGL---------------------NVF 175
           L  L L DN QLRSV   +F  LG L  L   R GL                     N  
Sbjct: 82  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
             L D  F  LG L+ L L G  ++++ + AFRGL  L  L+L  NR+  +       L 
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           RL  L +  N  S L       L  L+ L +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding Domain Reveals A Convergent Recognition Scaffold Mediating Inhibition Of Myelination Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
           GL  +    FRGL+ L+ L L DN LQ++P      L  L  L +  N  S +    F+G
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Query: 452 LSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLK 511
           L  L RL +   + +  V   AF D                         L  L  L L 
Sbjct: 176 LHSLDRL-LLHQNRVAHVHPHAFRD-------------------------LGRLMTLYLF 209
Query: 512 ENAFTSF-SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLK 568
            N  ++  +E++     L+ + + +NP  C C    LW      R ++S V C+ P  L 
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269
Query: 569 YKSLISLSAEDL 580
            + L  L+A DL
Sbjct: 270 GRDLKRLAANDL 281

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 8/234 (3%)
Query: 17  YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDL 75
           Y   + +T  P   LQ   +  IP+ S    QR+ L  NRI  V +A      +L  + L
Sbjct: 8   YNEPKVTTSCPQQGLQAVPVG-IPAAS----QRIFLHGNRISHVPAASFRACRNLTILWL 62
Query: 76  SHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR--ISRIDQA 133
                  I    F     L +L L+ N         +     R+     +R  +  +   
Sbjct: 63  HSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 122
Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 193
            F GL AL+ LYL DN L+++P  +F  LG L  L +  N  +++ + AF GL  L  L 
Sbjct: 123 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 182
Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           L    + ++  +AFR L  L +L L  N L ++PT+ L+ L  L+ L +  N +
Sbjct: 183 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 236

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 65/211 (30%), Positives = 86/211 (40%), Gaps = 31/211 (14%)
Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTA 140
           +P+G      + + L  N   H P     S  + R + I     N ++RID A F GL  
Sbjct: 25  VPVG-IPAASQRIFLHGNRISHVP---AASFRACRNLTILWLHSNVLARIDAAAFTGLAL 80
Query: 141 LRILYLDDN-QLRSVPTPSFIYLGMLAEL---RVGL---------------------NVF 175
           L  L L DN QLRSV   +F  LG L  L   R GL                     N  
Sbjct: 81  LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
             L D  F  LG L+ L L G  ++++ + AFRGL  L  L+L  NR+  +       L 
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           RL  L +  N  S L       L  L+ L +
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRL 231

>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor Length = 285

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 78/192 (40%), Gaps = 29/192 (15%)
Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
           GL  +    FRGL+ L+ L L DN LQ++P      L  L  L +  N  S +    F+G
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 174
Query: 452 LSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLK 511
           L  L RL +   + +  V   AF D                         L  L  L L 
Sbjct: 175 LHSLDRL-LLHQNRVAHVHPHAFRD-------------------------LGRLMTLYLF 208
Query: 512 ENAFTSF-SESMLAWPELRTIDIAENPIECGCNI--LWLREMLVRRNTSAVFCNSPAPLK 568
            N  ++  +E++     L+ + + +NP  C C    LW      R ++S V C+ P  L 
Sbjct: 209 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 268
Query: 569 YKSLISLSAEDL 580
            + L  L+A DL
Sbjct: 269 GRDLKRLAANDL 280

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 98  QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQAC-----------FEGLTALRILYL 146
           Q+  +  F + I  ++      +   QN ++ IDQ              + L  +R L L
Sbjct: 11  QIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLAL 70
Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
             N+L  +   +   L  L  L +  N   +L +G F+ L  L  L L    L ++ D  
Sbjct: 71  GGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGV 128
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           F  L+ L  L L  N+LQS+P     KLT L  L++  N    L  G F  L+ LK+L +
Sbjct: 129 FDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSL 188
Query: 267 TGASNLTRVRKGAF 280
              + L  V  G F
Sbjct: 189 ND-NQLKSVPDGVF 201

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 50/171 (29%), Positives = 74/171 (43%), Gaps = 6/171 (3%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
           L   G  L +IS  A + L+ L  L+LT N+LQS+P     KLT L+EL + +N    L 
Sbjct: 68  LALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP 125
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
            G F  L+ L  L +   + L  + KG F D                 + E     L  L
Sbjct: 126 DGVFDKLTNLTYLYLY-HNQLQSLPKGVF-DKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGC-NILWLREMLVRR 554
             L+L +N   S  + +      L  I +  NP +C C +IL+L   + + 
Sbjct: 184 KQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNPWDCACSDILYLSRWISQH 234

>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish Tlr5 In Complex With Salmonella Flagellin Length = 455

Iteration: 1
 Score = 68.9 bits (167), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 107/461 (23%), Positives = 185/461 (40%), Gaps = 75/461 (16%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSV-PTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           N I+ +++  F  L  L+ L ++      V    +F  L  L  L++  N F  L  GAF
Sbjct: 40  NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 184 NGLGRLSALDLRGAGLTN--ISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEEL 240
           NGL  L  L L    L    +S N F+ L+ L  LVL DN ++ I P      + R   L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
           ++    F+ +++ C + L   +    T    L R+      D                  
Sbjct: 160 DLT---FNKVKSICEEDLLNFQGKHFT----LLRLSSITLQDM----------------- 195
Query: 301 EEGALVGLPNLYHLNLKE--NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV 358
                    N Y L  ++  N F + S        + T+D++ N           +E + 
Sbjct: 196 ---------NEYWLGWEKCGNPFKNTS--------ITTLDLSGNG---------FKESMA 229
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN---AFRGL--SGLRSLVLT 413
           +R     F ++ A  K +SLI  ++ ++G +  G TN  D     F+GL  SG+++  L+
Sbjct: 230 KR-----FFDAIAGTKIQSLILSNSYNMG-SSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 414 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 473
            +++ ++     S  T LE+L + QN  + ++   F GL++L +L +  + N        
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL--SQNFLGSIDSR 341
Query: 474 FADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTID 532
             +                 + + + +GLPNL  L L  N   S  + +      L+ I 
Sbjct: 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW 401
Query: 533 IAENPIECGCNIL-----WLREMLVRRNTSAVFCNSPAPLK 568
           +  NP +C C  +     WL +   +   SA    S  P++
Sbjct: 402 LHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSGKPVR 442

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%)
Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
           ++ +  A F GLT L  L LD NQL+++    F  L  L  L +  N   +L  G F+ L
Sbjct: 47  LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
            +L  L L G  L ++    F  L+ L+ L L  N+LQSIP     KLT L+ L +  N 
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 247 FSMLEAGCFKGLSYLKRLEITG 268
              +  G F  L  L+ + + G
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFG 188

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 79/197 (40%), Gaps = 5/197 (2%)
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 424
           V C   +     S I    E L     GL  +SD  FRGL+ L  L L  N+LQ++    
Sbjct: 19  VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXX 484
              LT L  L +  N  + L  G F  L+ L +L + G + L  +  G F D        
Sbjct: 79  FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVF-DRLTKLKEL 136
Query: 485 XXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECG-C 542
                    I   A   L NL  L+L  N   S          +L+TI +  N  +C  C
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 543 NILWLREMLVRRNTSAV 559
             L+L +  +R N++ V
Sbjct: 197 ETLYLSQW-IRENSNKV 212

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 69/142 (48%)
Query: 127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL 186
           ++ +  A F GLT L  L LD NQL+++    F  L  L  L +  N   +L  G F+ L
Sbjct: 47  LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL 106
Query: 187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG 246
            +L  L L G  L ++    F  L+ L+ L L  N+LQSIP     KLT L+ L +  N 
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 247 FSMLEAGCFKGLSYLKRLEITG 268
              +  G F  L  L+ + + G
Sbjct: 167 LQSVPHGAFDRLGKLQTITLFG 188

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 80/197 (40%), Gaps = 5/197 (2%)
Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 424
           V C   +     S I    E L     GL  +SD  FRGL+ L  L L  N+LQ++    
Sbjct: 19  VDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78
Query: 425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXX 484
              LT L  L +  N  + L  G F  L+ L +L + G + L  +  G F D        
Sbjct: 79  FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVF-DRLTKLKEL 136
Query: 485 XXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECG-C 542
                    I   A   L NL  L+L  N   S          +L+TI +  N  +C  C
Sbjct: 137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 543 NILWLREMLVRRNTSAV 559
            IL+L +  +R N++ V
Sbjct: 197 EILYLSQW-IRENSNKV 212

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
           I   N+IS+I    F  L  L  LYL  NQL+ +P         L ELRV  N  T +  
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRK 138
Query: 181 GAFNGLGRLSALDLRGAGL--TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 238
             FNGL ++  ++L    L  + I + AF+G+  L  + + D  + +IP      LT   
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT--- 195
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
           EL +  N  + ++A   KGL+ L +L ++  S ++ V  G+ A+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
           N  T + DG F  L  L  L L    ++ IS  AF  L  L  L L+ N+L+ +P K   
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 233 KLT--RLEELEIGQ------NGF---------------SMLEAGCFKGLSYLKRLEITGA 269
            L   R+ E EI +      NG                S +E G F+G+  L  + I   
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD- 180
Query: 270 SNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML 329
           +N+T + +G                     ++  +L GL NL  L L  N+ ++     L
Sbjct: 181 TNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 330 A-WPELRTIDIAEN 342
           A  P LR + +  N
Sbjct: 237 ANTPHLRELHLNNN 250

>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1 Length = 329

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           FR    LR +  +D  L+ +P K L   T L  L++  N  + ++ G FK L  L  L I
Sbjct: 27  FRCQCHLRVVQCSDLGLEKVP-KDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL-I 82
Query: 267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE 326
              + ++++  GAFA                       LV L  LY   L +N      E
Sbjct: 83  LINNKISKISPGAFA----------------------PLVKLERLY---LSKNQLKELPE 117
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
            M     L+ + + EN I             VR++             +  L  +   +L
Sbjct: 118 KMPKT--LQELRVHENEI-----------TKVRKSV------------FNGLNQMIVVEL 152
Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
           G      + I + AF+G+  L  + + D  + +IP      LT   EL +  N  + ++A
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDA 209
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
              KGL+ L +L ++  S ++ V  G+ A+
Sbjct: 210 ASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 9/164 (5%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
           I   N+IS+I    F  L  L  LYL  NQL+ +P         L ELRV  N  T +  
Sbjct: 82  ILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRK 138
Query: 181 GAFNGLGRLSALDLRGAGL--TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 238
             FNGL ++  ++L    L  + I + AF+G+  L  + + D  + +IP      LT   
Sbjct: 139 SVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT--- 195
Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
           EL +  N  + ++A   KGL+ L +L ++  S ++ V  G+ A+
Sbjct: 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 52/194 (26%), Positives = 77/194 (39%), Gaps = 29/194 (14%)
Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
           N  T + DG F  L  L  L L    ++ IS  AF  L  L  L L+ N+L+ +P K   
Sbjct: 62  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 121
Query: 233 KLT--RLEELEIGQ------NGF---------------SMLEAGCFKGLSYLKRLEITGA 269
            L   R+ E EI +      NG                S +E G F+G+  L  + I   
Sbjct: 122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD- 180
Query: 270 SNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESML 329
           +N+T + +G                     ++  +L GL NL  L L  N+ ++     L
Sbjct: 181 TNITTIPQG----LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236
Query: 330 A-WPELRTIDIAEN 342
           A  P LR + +  N
Sbjct: 237 ANTPHLRELHLNNN 250

>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin, The Archetypal Small Leucine-Rich Repeat Proteoglycan Length = 330

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 58/270 (21%)
Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           FR    LR +  +D  L+ +P K L   T L  L++  N  + ++ G FK L  L  L I
Sbjct: 27  FRCQCHLRVVQCSDLGLEKVP-KDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTL-I 82
Query: 267 TGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE 326
              + ++++  GAFA                       LV L  LY   L +N      E
Sbjct: 83  LINNKISKISPGAFA----------------------PLVKLERLY---LSKNQLKELPE 117
Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
            M     L+ + + EN I             VR++             +  L  +   +L
Sbjct: 118 KMPKT--LQELRVHENEI-----------TKVRKSV------------FNGLNQMIVVEL 152
Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
           G      + I + AF+G+  L  + + D  + +IP      LT   EL +  N  + ++A
Sbjct: 153 GTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDA 209
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
              KGL+ L +L ++  S ++ V  G+ A+
Sbjct: 210 ASLKGLNNLAKLGLSFNS-ISAVDNGSLAN 238

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 92/229 (40%), Gaps = 52/229 (22%)
Query: 166 AELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
           AELR+  N FT L A G F  L +L  ++     +T+I + AF G SG+  ++LT NRL+
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94
Query: 225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXX 284
           ++  K    L  L+ L +  N  + +    F GLS ++ L +   + +T V  GAF    
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYD-NQITTVAPGAF---- 149
Query: 285 XXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
                                    +  H                    L T+++  NP 
Sbjct: 150 -------------------------DTLH-------------------SLSTLNLLANPF 165
Query: 345 ECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
            C C + WL E L ++   T    C  P  LK   +  ++ +D  C  A
Sbjct: 166 NCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDA 214

>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/190 (23%), Positives = 73/190 (38%), Gaps = 51/190 (26%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           +T+I + AF G SG+  ++LT NRL+++  K    L  L+ L +  N  + +    F GL
Sbjct: 69  ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL 128
Query: 453 SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKE 512
           S ++ L +   + +T V  GAF                      D L             
Sbjct: 129 SSVRLLSLYD-NQITTVAPGAF----------------------DTL------------- 152
Query: 513 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYK 570
                          L T+++  NP  C C + WL E L ++   T    C  P  LK  
Sbjct: 153 -------------HSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEI 199
Query: 571 SLISLSAEDL 580
            +  ++ +D 
Sbjct: 200 PIQDVAIQDF 209

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
           T  +ILYL DNQ+  +    F  L  L EL +G N    L  G F+ L +L+ LDL    
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
           LT +    F  L  L+ L +  N+L  +P + + +LT L  L + QN    +  G F  L
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRL 158
Query: 259 SYLKRLEITG 268
           S L    + G
Sbjct: 159 SSLTHAYLFG 168

>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr) Rbc36 In Complex With H-Trisaccharide Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 45/224 (20%)
Query: 340 AENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN 399
           A  P +C C+             + V C S       + I  +A+ L      +T +   
Sbjct: 11  AACPSQCSCS------------GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPG 58
Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
            F  L  L+ L L  N+L ++P      LT+L  L++G N  ++L +  F  L +LK L 
Sbjct: 59  VFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF 118
Query: 460 ITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFS 519
           +   + LT + +G                     IE      L +L HL L +N   S  
Sbjct: 119 MC-CNKLTELPRG---------------------IER-----LTHLTHLALDQNQLKSIP 151
Query: 520 ESMLAWPELRTIDIAE---NPIECGC-NILWLREMLVRRNTSAV 559
               A+  L ++  A    NP +C C +I++LR  +    + A+
Sbjct: 152 HG--AFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHTSIAM 193

>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish Tlr5 Length = 407

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 90/361 (24%), Positives = 152/361 (42%), Gaps = 68/361 (18%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSV-PTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           N I+ +++  F  L  L+ L ++      V    +F  L  L  L++  N F  L  GAF
Sbjct: 40  NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAF 99
Query: 184 NGLGRLSALDLRGAGLTN--ISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEEL 240
           NGL  L  L L    L    +S N F+ L+ L  LVL DN ++ I P      + R   L
Sbjct: 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159
Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXI 300
           ++    F+ +++ C + L   +    T    L R+      D                  
Sbjct: 160 DLT---FNKVKSICEEDLLNFQGKHFT----LLRLSSITLQDM----------------- 195
Query: 301 EEGALVGLPNLYHLNLKE--NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV 358
                    N Y L  ++  N F + S        + T+D++ N           +E + 
Sbjct: 196 ---------NEYWLGWEKCGNPFKNTS--------ITTLDLSGNG---------FKESMA 229
Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN---AFRGL--SGLRSLVLT 413
           +R     F ++ A  K +SLI  ++ ++G +  G TN  D     F+GL  SG+++  L+
Sbjct: 230 KR-----FFDAIAGTKIQSLILSNSYNMG-SSFGHTNFKDPDNFTFKGLEASGVKTCDLS 283
Query: 414 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 473
            +++ ++     S  T LE+L + QN  + ++   F GL++LK L +   + L  V  G 
Sbjct: 284 KSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELAL-DTNQLKSVPDGI 342
Query: 474 F 474
           F
Sbjct: 343 F 343

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 8/201 (3%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           +D RG GLT I  N    ++ +R   L  N ++ IP    S   +L  +++  N  S L 
Sbjct: 16  VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNL 311
              F+GL  L  L + G + +T + K  F +                 +   A   L NL
Sbjct: 73  PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINXLRVDAFQDLHNL 130
Query: 312 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 368
             L+L +N   + ++   +    ++T+ +A+NP  C C++ WL + L      TS   C 
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 369 SPAPLKYKSLISLSAEDLGCA 389
           SP  L  K +  + ++   C+
Sbjct: 191 SPRRLANKRIGQIKSKKFRCS 211

>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2 Length = 220

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
           + C G GLT I  N    ++ +R   L  N ++ IP    S   +L  +++  N  S L 
Sbjct: 16  VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
              F+GL  L  L + G + +T + K  F +                 +  DA   L NL
Sbjct: 73  PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINXLRVDAFQDLHNL 130
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 562
             L+L +N   + ++   +    ++T+ +A+NP  C C++ WL + L      TS   C 
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 563 SPAPLKYKSLISLSAEDL 580
           SP  L  K +  + ++  
Sbjct: 191 SPRRLANKRIGQIKSKKF 208

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 8/201 (3%)
Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           +D RG GLT I  N    ++ +R   L  N ++ IP    S   +L  +++  N  S L 
Sbjct: 16  VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNL 311
              F+GL  L  L + G + +T + K  F +                 +   A   L NL
Sbjct: 73  PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNL 130
Query: 312 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 368
             L+L +N   + ++   +    ++T+ +A+NP  C C++ WL + L      TS   C 
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 369 SPAPLKYKSLISLSAEDLGCA 389
           SP  L  K +  + ++   C+
Sbjct: 191 SPRRLANKRIGQIKSKKFRCS 211

>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 220

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 8/198 (4%)
Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
           + C G GLT I  N    ++ +R   L  N ++ IP    S   +L  +++  N  S L 
Sbjct: 16  VDCRGKGLTEIPTNLPETITEIR---LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA 72
Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNL 505
              F+GL  L  L + G + +T + K  F +                 +  DA   L NL
Sbjct: 73  PDAFQGLRSLNSLVLYG-NKITELPKSLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNL 130
Query: 506 YHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN 562
             L+L +N   + ++   +    ++T+ +A+NP  C C++ WL + L      TS   C 
Sbjct: 131 NLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCT 190
Query: 563 SPAPLKYKSLISLSAEDL 580
           SP  L  K +  + ++  
Sbjct: 191 SPRRLANKRIGQIKSKKF 208

>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein Length = 332

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 30/182 (16%)
Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTL 178
           +   N+IS+I +  F  L  L+ LY+  N L  +P   PS      L ELR+  N    +
Sbjct: 84  VLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPS-----SLVELRIHDNRIRKV 138
Query: 179 ADGAFNGLGRLSALDLRGAGLTN--ISDNAFRGLS--------------------GLRSL 216
             G F+GL  ++ +++ G  L N      AF GL                      L  L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198
Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
            L  N++Q+I  + L + ++L  L +G N   M+E G    L  L+ L +   + L+RV 
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDN-NKLSRVP 257
Query: 277 KG 278
            G
Sbjct: 258 AG 259

>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With Three Fabs (Form1) Length = 694

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 176/472 (37%), Gaps = 83/472 (17%)
Query: 126 RISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           ++S      F GL  T L +L L  N L  V   SF +L  L    +  N    L   + 
Sbjct: 243 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 302
Query: 184 NGLGRLSALDLRG---------AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
           +GL  +  L+L+          A L  I D +F+ L  L  L + DN +  I +   + L
Sbjct: 303 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 362
Query: 235 TRLEELEIGQNGFSMLEA---GCFKGLSY--LKRLEITGASNLTRVRKGAFADXXXXXXX 289
             L+ L +  N F+ L       F  L++  L  L +T  + ++++   AF+        
Sbjct: 363 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVL 420
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
                     +      GL N++ + L  N +   + +  A                   
Sbjct: 421 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL------------------ 462
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
           +  L+ +++RR       +SP+P  ++ L +L+  DL        N       GL  L  
Sbjct: 463 VPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDD--MLEGLEKLEI 518
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
           L L  N L  +        P   L  L+ L  L +  NGF  +    FK L  LK +++ 
Sbjct: 519 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL- 577
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
           G +NL  +    F +                           +L  LNL++N  TS  + 
Sbjct: 578 GLNNLNTLPASVFNNQV-------------------------SLKSLNLQKNLITSVEKK 612
Query: 522 ML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
           +   A+  L  +D+  NP +C C +I W    +   +T      S   CN+P
Sbjct: 613 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 664

>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand Binding Domain Length = 705

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 176/472 (37%), Gaps = 83/472 (17%)
Query: 126 RISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           ++S      F GL  T L +L L  N L  V   SF +L  L    +  N    L   + 
Sbjct: 238 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 297
Query: 184 NGLGRLSALDLRG---------AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
           +GL  +  L+L+          A L  I D +F+ L  L  L + DN +  I +   + L
Sbjct: 298 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 357
Query: 235 TRLEELEIGQNGFSMLEA---GCFKGLSY--LKRLEITGASNLTRVRKGAFADXXXXXXX 289
             L+ L +  N F+ L       F  L++  L  L +T  + ++++   AF+        
Sbjct: 358 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVL 415
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
                     +      GL N++ + L  N +   + +  A                   
Sbjct: 416 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL------------------ 457
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
           +  L+ +++RR       +SP+P  ++ L +L+  DL        N       GL  L  
Sbjct: 458 VPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDD--MLEGLEKLEI 513
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
           L L  N L  +        P   L  L+ L  L +  NGF  +    FK L  LK +++ 
Sbjct: 514 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL- 572
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
           G +NL  +    F +                           +L  LNL++N  TS  + 
Sbjct: 573 GLNNLNTLPASVFNNQV-------------------------SLKSLNLQKNLITSVEKK 607
Query: 522 ML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
           +   A+  L  +D+  NP +C C +I W    +   +T      S   CN+P
Sbjct: 608 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 659

>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure Length = 680

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 107/472 (22%), Positives = 176/472 (37%), Gaps = 83/472 (17%)
Query: 126 RISRIDQACFEGL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           ++S      F GL  T L +L L  N L  V   SF +L  L    +  N    L   + 
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL 292
Query: 184 NGLGRLSALDLRG---------AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
           +GL  +  L+L+          A L  I D +F+ L  L  L + DN +  I +   + L
Sbjct: 293 HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL 352
Query: 235 TRLEELEIGQNGFSMLEA---GCFKGLSY--LKRLEITGASNLTRVRKGAFADXXXXXXX 289
             L+ L +  N F+ L       F  L++  L  L +T  + ++++   AF+        
Sbjct: 353 INLKYLSLS-NSFTSLRTLTNETFVSLAHSPLHILNLT-KNKISKIESDAFSWLGHLEVL 410
Query: 290 XXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
                     +      GL N++ + L  N +   + +  A                   
Sbjct: 411 DLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL------------------ 452
Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
           +  L+ +++RR       +SP+P  ++ L +L+  DL        N       GL  L  
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSP--FQPLRNLTILDLSNNNIANINDD--MLEGLEKLEI 508
Query: 410 LVLTDNRLQSI--------PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
           L L  N L  +        P   L  L+ L  L +  NGF  +    FK L  LK +++ 
Sbjct: 509 LDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDL- 567
Query: 462 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSES 521
           G +NL  +    F +                           +L  LNL++N  TS  + 
Sbjct: 568 GLNNLNTLPASVFNNQV-------------------------SLKSLNLQKNLITSVEKK 602
Query: 522 ML--AWPELRTIDIAENPIECGC-NILWLREMLVRRNT------SAVFCNSP 564
           +   A+  L  +D+  NP +C C +I W    +   +T      S   CN+P
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNTP 654

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 64/120 (53%), Gaps = 4/120 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L+ N+L+S+P   F  L  L +L +  N   +L DG F+ L +L+ L L    L ++ 
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
           +  F  L+ L+ L L  N+L+S+P     +LT L+++ +  N +   +  C + + YL R
Sbjct: 93  NGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW---DCSCPR-IDYLSR 148

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
           + + CNS       + I  SA  L      L ++    F  L+ L  L L+ N++QS+P 
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 423 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
               KLT+L  L + +N    L  G F  L+ LK L +   + L  V  G F
Sbjct: 70  GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL-DTNQLKSVPDGIF 120

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 122/562 (21%), Positives = 215/562 (38%), Gaps = 112/562 (19%)
Query: 34  ANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEK 93
           +++D IP H+  +++ L L +N I ++                      +P G    + K
Sbjct: 118 SSIDFIPLHNQKTLESLYLGSNHISSIK---------------------LPKGFPTEKLK 156
Query: 94  LVELQLNHNKHFPQQIVCSIISPRRVEI-FGQNRISRIDQACFE----------GLTALR 142
           +++ Q N   +  ++ + S+     + +    N I+ I+   F+          G   L 
Sbjct: 157 VLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL 216
Query: 143 ILY--LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS--ALDLRGAG 198
           +++  L ++ ++S      ++LG   ++         ++   F GL  +S  +++L+   
Sbjct: 217 VIFKGLKNSTIQS------LWLGTFEDMDD-----EDISPAVFEGLCEMSVESINLQKHY 265
Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
             NIS N F   SGL+ L LT   L  +P+  L  L+ L++L +  N F  L        
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELPSG-LVGLSTLKKLVLSANKFENLCQISASNF 324
Query: 259 SYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKE 318
             L  L I G  N  R+  G                        G L  L NL       
Sbjct: 325 PSLTHLSIKG--NTKRLELGT-----------------------GCLENLENL------- 352
Query: 319 NAFTSFSESMLAWPELRTIDIAENPIECG-CNILWLREMLVRRNTSAVFCNSPAPLK--- 374
                           R +D++ + IE   C  L LR +   ++ +  + N P  LK   
Sbjct: 353 ----------------RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSY-NEPLSLKTEA 395
Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
           +K    L   DL      + + + + F+ L  L+ L L+ + L     +    L  L+ L
Sbjct: 396 FKECPQLELLDLAFTRLKVKD-AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL 454
Query: 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADXXXXXXXXXXXXXXXX 492
            +  N F          L  L RLEI   S  +L+ + + AF                  
Sbjct: 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTS 514
Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN----ILWL 547
              E AL  L  +Y LNL  N  +    S+L    + RTI++ +NP++C C+    + W 
Sbjct: 515 SSIE-ALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572
Query: 548 REMLVR-RNTSAVFCNSPAPLK 568
           +E + +  +T    C +P  L+
Sbjct: 573 KENMQKLEDTEDTLCENPPLLR 594

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 137 GLT-ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
           GLT A++ L L +N++  +          L  L +  N   T+ + +F+ LG L  LDL 
Sbjct: 23  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQ-NGFSMLEAG 253
              L+N+S + F+ LS L  L L  N  +++  T   S LT+L+ L +G  + F+ ++  
Sbjct: 83  YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 142
Query: 254 CFKGLSYLKRLEITGA 269
            F GL++L+ LEI  +
Sbjct: 143 DFAGLTFLEELEIDAS 158

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 94/411 (22%), Positives = 155/411 (37%), Gaps = 44/411 (10%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           + +LDL    +T IS++  +    L++LVLT N + +I     S L  LE L++  N  S
Sbjct: 28  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 87
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGL 308
            L +  FK LS L  L + G    T      F+                  I+     GL
Sbjct: 88  NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 147
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
             L  L +  +   S+         L++I    + I      + L E+ V   TS+V C 
Sbjct: 148 TFLEELEIDASDLQSYEPK-----SLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVEC- 200
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
               L+   L +    +L     G TN     F      R++ +TD  L  +  K L+++
Sbjct: 201 --LELRDTDLDTFHFSEL---STGETNSLIKKF----TFRNVKITDESLFQV-MKLLNQI 250
Query: 429 TRLEELEIGQ---NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXX 485
           + L ELE      NG     A     +    ++E      L   R   F D         
Sbjct: 251 SGLLELEFDDCTLNGVGNFRASDNDRVIDPGKVETLTIRRLHIPRFYLFYDLSTLYSLTE 310
Query: 486 XXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML------------AWPELRTIDI 533
                   +E   +  +P L   +LK   +   SE+++            AWP L+T+ +
Sbjct: 311 RVKRIT--VENSKVFLVPCLLSQHLKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLIL 368
Query: 534 AENPI----ECGCNILWLREML---VRRNTSAVF---CNSPAPLKYKSLIS 574
            +N +    + G  +L L+ +    + +N+       C  P  +KY +L S
Sbjct: 369 RQNHLASLEKTGETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNLSS 419

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 137 GLT-ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
           GLT A++ L L +N++  +          L  L +  N   T+ + +F+ LG L  LDL 
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQ-NGFSMLEAG 253
              L+N+S + F+ LS L  L L  N  +++  T   S LT+L+ L +G  + F+ ++  
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168
Query: 254 CFKGLSYLKRLEITGA 269
            F GL++L+ LEI  +
Sbjct: 169 DFAGLTFLEELEIDAS 184

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 110/270 (40%), Gaps = 17/270 (6%)
Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           + +LDL    +T IS++  +    L++LVLT N + +I     S L  LE L++  N  S
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113
Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGL 308
            L +  FK LS L  L + G    T      F+                  I+     GL
Sbjct: 114 NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173
Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
             L  L +  +   S+         L++I    + I      + L E+ V   TS+V C 
Sbjct: 174 TFLEELEIDASDLQSYEP-----KSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVEC- 226
Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
               L+   L +    +L     G TN     F      R++ +TD  L  +  K L+++
Sbjct: 227 --LELRDTDLDTFHFSEL---STGETNSLIKKFT----FRNVKITDESLFQV-MKLLNQI 276
Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
           + L ELE  +N    +  G F  L+ L+++
Sbjct: 277 SGLLELEFSRNQLKSVPDGIFDRLTSLQKI 306

>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 276

Iteration: 1
 Score = 52.0 bits (123), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 150
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 151 LEHLDLSS 158

>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran Complex Length = 279

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 35  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 95  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 152
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 153 LEHLDLSS 160

>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 34  LDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 151
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 152 LEHLDLSS 159

>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e Length = 278

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 34  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 93
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 94  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 151
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 152 LEHLDLSS 159

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 30/178 (16%)
Query: 216 LVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 274
           L+L DN L  I +  L  +L  L +LE+ +N  + +E   F+G S+++ L++ G + +  
Sbjct: 34  LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL-GENKIKE 92
Query: 275 VRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS-FSESMLAWPE 333
           +    F                         +GL  L  LNL +N  +     S      
Sbjct: 93  ISNKMF-------------------------LGLHQLKTLNLYDNQISCVMPGSFEHLNS 127
Query: 334 LRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
           L ++++A NP  C C++ W  E L ++  N  A  C +P+ ++   +  L   +  C+
Sbjct: 128 LTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185

>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 79/185 (42%), Gaps = 33/185 (17%)
Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEA 446
           C G GL  I  +     +    L+L DN L  I +  L  +L  L +LE+ +N  + +E 
Sbjct: 15  CTGRGLKEIPRDIPLHTT---ELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP 71
Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLY 506
             F+G S+++ L++ G + +  +    F                         +GL  L 
Sbjct: 72  NAFEGASHIQELQL-GENKIKEISNKMF-------------------------LGLHQLK 105
Query: 507 HLNLKENAFTS-FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNS 563
            LNL +N  +     S      L ++++A NP  C C++ W  E L ++  N  A  C +
Sbjct: 106 TLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA 165
Query: 564 PAPLK 568
           P+ ++
Sbjct: 166 PSKVR 170

>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l Length = 279

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 35  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 94
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 95  LGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 152
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 153 LEHLDLSS 160

>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 129/330 (39%), Gaps = 64/330 (19%)
Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
           FG + I   DQ  F GL    + +LD        +  F++        +   VF TL D 
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLD-------LSHGFVF-------SLNSRVFETLKD- 291
Query: 182 AFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
                  L  L+L    +  I+D AF GL  L+ L L+ N L  + +     L ++  ++
Sbjct: 292 -------LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344
Query: 242 IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIE 301
           + +N  ++++   FK L  L+ L++   +  T     +  D                 + 
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF---------------LS 389
Query: 302 EGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW-------LR 354
              LV LP +   NL  N                 I ++EN +E   +IL+       L+
Sbjct: 390 GNKLVTLPKI---NLTANL----------------IHLSENRLE-NLDILYFLLRVPHLQ 429
Query: 355 EMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTD 414
            +++ +N  +       P +  SL  L   +     A  T +  + F GLS L+ L L  
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489
Query: 415 NRLQSIPTKQLSKLTRLEELEIGQNGFSML 444
           N L S+P    S LT L  L +  N  ++L
Sbjct: 490 NYLNSLPPGVFSHLTALRGLSLNSNRLTVL 519

>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 5/123 (4%)
Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
           N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++  AF 
Sbjct: 62  NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121
Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSYLKRLE 265
           GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ L+ L+
Sbjct: 122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLD 179
Query: 266 ITG 268
           ++ 
Sbjct: 180 LSS 182

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 150
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 151 LEHLDLSS 158

>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 75/332 (22%), Positives = 124/332 (37%), Gaps = 51/332 (15%)
Query: 120 EIFGQNRISRIDQACFEGLTAL-----RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV 174
           E   +  + + D++  EGL  L     R+ YLD             YL  + +L      
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD------------YYLDDIIDL------ 277
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
                   FN L  +S+  L    +  + D ++    G + L L + +    PT +L  L
Sbjct: 278 --------FNCLTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVNCKFGQFPTLKLKSL 327
Query: 235 TRLE-ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG--AFADXXXXXXXXX 291
            RL      G N FS ++         L  LE    S      KG  + +D         
Sbjct: 328 KRLTFTSNKGGNAFSEVD---------LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 292 XXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSE--SMLAWPELRTIDIAENPIECGCN 349
                         +GL  L HL+ + +     SE    L+   L  +DI+        N
Sbjct: 379 DLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN 438
Query: 350 ILW--LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL 407
            ++  L  + V +     F  +  P  +  L +L+  DL  +   L  +S  AF  LS L
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDL--SQCQLEQLSPTAFNSLSSL 496
Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
           + L +  N+L+S+P     +LT L+++ +  N
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 5/128 (3%)
Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L  N LR + + SF     L  L +      T+ DGA+  L  LS L L G  + +++
Sbjct: 33  LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN---GFSMLEAGCFKGLSY 260
             AF GLS L+ LV  +  L S+    +  L  L+EL +  N    F + E   F  L+ 
Sbjct: 93  LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTN 150
Query: 261 LKRLEITG 268
           L+ L+++ 
Sbjct: 151 LEHLDLSS 158

>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain Length = 390

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 62/142 (43%)
Query: 117 RRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 176
           +++  F  + + ++  A  +    + +L L+D Q+  + T +F Y   + +L +G N   
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106
Query: 177 TLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 236
            L    F  +  L+ L L    L+++    F     L +L +++N L+ I        T 
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 237 LEELEIGQNGFSMLEAGCFKGL 258
           L+ L++  N  + ++      L
Sbjct: 167 LQNLQLSSNRLTHVDLSLIPSL 188

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 183/464 (39%), Gaps = 65/464 (14%)
Query: 47  IQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH- 104
           +Q L+L ++RI T++      L SL+H+DLS      +    F P   L  L L  N + 
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111
Query: 105 -------FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 157
                  FP       +    VE F +  I RID   F GLT+L  L +    LR+  + 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSE--IRRID---FAGLTSLNELEIKALSLRNYQSQ 166
Query: 158 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS------ 211
           S   +  +  L + L+    L +   + L  +  L+LR    TN++   F  L       
Sbjct: 167 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD---TNLARFQFSPLPVDEVSS 223
Query: 212 -----GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ---NGFSMLEAGCFKGLSYLKR 263
                  R  VLTD     +  K L  +  L E+E      NG           +S L +
Sbjct: 224 PMKKLAFRGSVLTDESFNEL-LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 264 LEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS 323
           +E      L   +   F D                 +E   +  +P  +  +LK   F  
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLD 340
Query: 324 FSESML------------AWPELRTIDIAENPI----ECGCNILWLREML---VRRNTSA 364
            SE+++            AWP L+T+ +++N +    + G  +L L+ +    + RNT  
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400
Query: 365 VF---CNSPAPLKYKSLISLSAEDLG-CAGAGLT--NISDNAFRGLS----GLRSLVLTD 414
                C  P  +++ +L S     +  C    L   ++S+N     S     L+ L ++ 
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 460
Query: 415 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
           N+L+++P   L  +  L  ++I +N    +  G F  L+ L+++
Sbjct: 461 NKLKTLPDASLFPV--LLVMKISRNQLKSVPDGIFDRLTSLQKI 502

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 145/380 (38%), Gaps = 43/380 (11%)
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
           FT++  G       + +LDL    +T I     R  + L+ L+L  +R+ +I       L
Sbjct: 17  FTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 235 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXX 294
             LE L++  N  S L +  F  LS LK L + G    T      F +            
Sbjct: 74  GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Query: 295 XXXXXIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELR--TIDIAENP--IECGCN 349
                I      GL +L  L +K  +  ++ S+S+ +  ++   T+ ++E+   +E   +
Sbjct: 134 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 193
Query: 350 IL-WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
           IL  +R + +R    A F  SP P+     +S   + L   G+ LT   D +F  L  L 
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDE---VSSPMKKLAFRGSVLT---DESFNELLKLL 247
Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468
             +L              +L+ +E  +   NG           +S L ++E      L  
Sbjct: 248 RYIL--------------ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 293
Query: 469 VRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML----- 523
            +   F D                 +E   +  +P  +  +LK   F   SE+++     
Sbjct: 294 PQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351
Query: 524 -------AWPELRTIDIAEN 536
                  AWP L+T+ +++N
Sbjct: 352 KNSACKGAWPSLQTLVLSQN 371

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           L  L  L L  NQL+S+P      L  L  L V  N  T+L  GA  GLG L  L L+G 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
            L  +          L  L L +N+L  +P   L+ L  L+ L + +N    +  G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           L  L  L L  NQL+S+P      L  L  L V  N  T+L  GA  GLG L  L L+G 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
            L  +          L  L L +N+L  +P   L+ L  L+ L + +N    +  G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           L  L  L L  NQL+S+P      L  L  L V  N  T+L  GA  GLG L  L L+G 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
            L  +          L  L L +N+L  +P   L+ L  L+ L + +N    +  G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           L  L  L L  NQL+S+P      L  L  L V  N  T+L  GA  GLG L  L L+G 
Sbjct: 76  LPVLGTLDLSHNQLQSLPLLGQT-LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
            L  +          L  L L +N+L  +P   L+ L  L+ L + +N    +  G F
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 QLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNQLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 100 LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 159
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 160 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 194

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 94  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 151
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 152 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 194

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           L +  N+  T +        RL+ L+L  A LT +  +    L  L +L L+ N+LQS+P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
                 L  L  L++  N  + L  G  +GL  L+ L + G  N  +             
Sbjct: 94  LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
                       +  G L GL NL  L L+EN+  +  +       L    +  NP  C 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
           C IL+ R  L + N   V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 107/464 (23%), Positives = 182/464 (39%), Gaps = 65/464 (14%)
Query: 47  IQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH- 104
           +Q L+L ++RI T++      L SL+H+DLS      +    F P   L  L L  N + 
Sbjct: 78  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 137
Query: 105 -------FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTP 157
                  FP       +    VE F +  I RID   F GLT+L  L +    LR+  + 
Sbjct: 138 TLGVTSLFPNLTNLQTLRIGNVETFSE--IRRID---FAGLTSLNELEIKALSLRNYQSQ 192
Query: 158 SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS------ 211
           S   +  +  L + L+    L +   + L  +  L+LR    TN++   F  L       
Sbjct: 193 SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD---TNLARFQFSPLPVDEVSS 249
Query: 212 -----GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ---NGFSMLEAGCFKGLSYLKR 263
                  R  VLTD     +  K L  +  L E+E      NG           +S L +
Sbjct: 250 PMKKLAFRGSVLTDESFNEL-LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 308
Query: 264 LEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTS 323
           +E      L   +   F D                 +E   +  +P  +  +LK   F  
Sbjct: 309 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLD 366
Query: 324 FSESML------------AWPELRTIDIAENPI----ECGCNILWLREML---VRRNTSA 364
            SE+++            AWP L+T+ +++N +    + G  +L L+ +    + RNT  
Sbjct: 367 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 426
Query: 365 VF---CNSPAPLKYKSLISLSAEDLG-CAGAGLT--NISDNAFRGLS----GLRSLVLTD 414
                C  P  +++ +L S     +  C    L   ++S+N     S     L+ L ++ 
Sbjct: 427 PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISR 486
Query: 415 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
           N+L+++P   L  +  L  ++I  N    +  G F  L+ L+++
Sbjct: 487 NKLKTLPDASLFPV--LLVMKIASNQLKSVPDGIFDRLTSLQKI 528

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 145/380 (38%), Gaps = 43/380 (11%)
Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 234
           FT++  G       + +LDL    +T I     R  + L+ L+L  +R+ +I       L
Sbjct: 43  FTSIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 235 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXX 294
             LE L++  N  S L +  F  LS LK L + G    T      F +            
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 159
Query: 295 XXXXXIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELR--TIDIAENP--IECGCN 349
                I      GL +L  L +K  +  ++ S+S+ +  ++   T+ ++E+   +E   +
Sbjct: 160 ETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFAD 219
Query: 350 IL-WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
           IL  +R + +R    A F  SP P+     +S   + L   G+ LT   D +F  L  L 
Sbjct: 220 ILSSVRYLELRDTNLARFQFSPLPVDE---VSSPMKKLAFRGSVLT---DESFNELLKLL 273
Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468
             +L              +L+ +E  +   NG           +S L ++E      L  
Sbjct: 274 RYIL--------------ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHI 319
Query: 469 VRKGAFADXXXXXXXXXXXXXXXXIIEEDALVGLPNLYHLNLKENAFTSFSESML----- 523
            +   F D                 +E   +  +P  +  +LK   F   SE+++     
Sbjct: 320 PQFYLFYDLSTVYSLLEKVKRIT--VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 377
Query: 524 -------AWPELRTIDIAEN 536
                  AWP L+T+ +++N
Sbjct: 378 KNSACKGAWPSLQTLVLSQN 397

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           L +  N+  T +        RL+ L+L  A LT +  +    L  L +L L+ N+LQS+P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
                 L  L  L++  N  + L  G  +GL  L+ L + G  N  +             
Sbjct: 94  LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
                       +  G L GL NL  L L+EN+  +  +       L    +  NP  C 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
           C IL+ R  L + N   V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX Length = 597

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/142 (20%), Positives = 62/142 (43%)
Query: 117 RRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT 176
           +++  F  + + ++  A  +    + +L L+D Q+  + T +F Y   + +L +G N   
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112
Query: 177 TLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 236
            L    F  +  L+ L L    L+++    F     L +L +++N L+ I        T 
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172
Query: 237 LEELEIGQNGFSMLEAGCFKGL 258
           L+ L++  N  + ++      L
Sbjct: 173 LQNLQLSSNRLTHVDLSLIPSL 194

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 DLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N  + L AG   GL
Sbjct: 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGL 171
Query: 453 SYLKRLEITGASNLTRVRKGAFA 475
             L  L +   ++L  + KG F 
Sbjct: 172 ENLDTL-LLQENSLYTIPKGFFG 193

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 224
           + EL +  N FT L     +    L+ +DL    ++ +S+ +F  ++ L +L+L+ NRL+
Sbjct: 33  VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
            IP +    L  L  L +  N  S++  G F  LS L  L I GA+ L
Sbjct: 92  CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI-GANPL 138

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L  L+ LD+    LT++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N
Sbjct: 99  LPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158
Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 159 NLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 79/199 (39%), Gaps = 6/199 (3%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           L +  N+  T +        RL+ L+L  A LT +  +    L  L +L L+ N+LQS+P
Sbjct: 36  LHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLP 93
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXX 287
                 L  L  L++  N  + L  G  +GL  L+ L + G  N  +             
Sbjct: 94  LLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG--NELKTLPPGLLTPTPKL 150
Query: 288 XXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 347
                       +  G L GL NL  L L+EN+  +  +       L    +  NP  C 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210
Query: 348 CNILWLREMLVRRNTSAVF 366
           C IL+ R  L + N   V+
Sbjct: 211 CEILYFRRWL-QDNAENVY 228

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
           PL  ++L +L+  D+  +   LT++   A RGL  L+ L L  N L+++P   L+   +L
Sbjct: 93  PLLGQTLPALTVLDV--SFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150
Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           E+L +  N  + L AG   GL  L  L +   ++L  + KG F 
Sbjct: 151 EKLSLANNNLTELPAGLLNGLENLDTL-LLQENSLYTIPKGFFG 193

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 141/359 (39%), Gaps = 22/359 (6%)
Query: 46  SIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIG--GFEPQEKLVELQLNHN 102
           S++ L L  +R   + S     +  LQ +DL+ T    +P G  G    +KLV L +NH 
Sbjct: 252 SVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLV-LSVNHF 310
Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY- 161
               Q    +  S   + I G  +   +   C E L  L+ L L  N + +    S    
Sbjct: 311 DQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLK 370
Query: 162 -LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL-TNISDNAFRGLSGLRSLVLT 219
            L  L  L +  N    L   AF    +L  LDL    L  N   + F+ L  L+ L LT
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLT 430
Query: 220 DNRLQSIPTKQLSKLTRLEELEIGQNGF---SMLEAGCFKGLSYLKRLEITGASNLTRVR 276
              L +     L+ L  L  L +  N F   ++ +    + +  L+ L I  +  L  + 
Sbjct: 431 YCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVL-ILSSCGLLSID 489
Query: 277 KGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLYHLNLKENAFTSFSESMLA-WPELR 335
           + AF                     + +L  L  +Y LNL  N+    S  +L    +  
Sbjct: 490 QQAFHSLGKMSHVDLSHNSLTCDSID-SLSHLKGIY-LNLAANSINIISPRLLPILSQQS 547
Query: 336 TIDIAENPIECGCN----ILWLREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
           TI+++ NP++C C+    + W +E L +   +    C +P  L+    + LS   L C 
Sbjct: 548 TINLSHNPLDCTCSNIHFLTWYKENLHKLEGSEETTCANPPSLRG---VKLSDVKLSCG 603

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 98/442 (22%), Positives = 158/442 (35%), Gaps = 54/442 (12%)
Query: 116 PRRVEI--FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
           P   E   F  N +  I    F  L  L  L L   Q+  +   +F     L+ L +  N
Sbjct: 29  PNTTEFLEFSFNFLPTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGN 88
Query: 174 VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI------P 227
               +A+ + NG   L  L L   G++N+       L  L SL L  N + SI      P
Sbjct: 89  PLIFMAETSLNGPKSLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFP 148
Query: 228 TKQLSKLT---------------RLEE-----LEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
            + L  L                 LE+     L    N    +E G F   +  + L   
Sbjct: 149 ARNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKGIELGAFDS-TIFQSLNFG 207
Query: 268 GASNLTRVRKGAFADXXXXXXXXXXXXXXXXXIEEGALVGLPNLY--HLNLKENAFTSFS 325
           G  NL+ +  G                     I    L GL  +    LNL+E+ F+  S
Sbjct: 208 GTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGLCEMSVESLNLQEHRFSDIS 267
Query: 326 ESML-AWPELRTIDIAENPIEC------GCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
            +    + +L+ +D+    ++       G N+L  +++++  N     C   A   + SL
Sbjct: 268 STTFQCFTQLQELDLTATHLKGLPSGMKGLNLL--KKLVLSVNHFDQLCQISAA-NFPSL 324
Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEI 436
             L             ++       L  L++L L+ N +++    + QL  L+ L+ L +
Sbjct: 325 THLYIR----GNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNL 380
Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADXXXXXXXXXXXXXXXXIIE- 495
             N    L++  FK    L+ L++      TR+   A                    ++ 
Sbjct: 381 SHNEPLGLQSQAFKECPQLELLDLA----FTRLHINAPQSPFQNLHFLQVLNLTYCFLDT 436
Query: 496 --EDALVGLPNLYHLNLKENAF 515
             +  L GLP L HLNLK N F
Sbjct: 437 SNQHLLAGLPVLRHLNLKGNHF 458

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           + +  N    L   +F+    L  LDL    +  I D A+ GL  L +L+LT N +QS  
Sbjct: 37  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
               S LT LE L   +   + LE+     L  LK+L +
Sbjct: 97  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 45/99 (45%)
Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           + +  N    L   +F+    L  LDL    +  I D A+ GL  L +L+LT N +QS  
Sbjct: 32  IDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 91
Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
               S LT LE L   +   + LE+     L  LK+L +
Sbjct: 92  PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 130

>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant In Complex With A Protein Antigen Length = 170

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
           I +  +V     NRI++++   F+ LT L  L LD+NQL  +P   F  L  L +L +  
Sbjct: 28  IPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87
Query: 173 NVFTTLADGAFNGLGRLSAL 192
           N   ++  GAF+ L  L+ +
Sbjct: 88  NQLKSIPRGAFDNLRSLTHI 107

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 40/70 (57%)
Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N+I++++   F+ L  L+ LY + N+L ++PT  F  L  L +L +  N   ++  GAF+
Sbjct: 43  NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102
Query: 185 GLGRLSALDL 194
            L  L+ + L
Sbjct: 103 NLKSLTHIYL 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	581
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-74
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-69
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-65
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-47
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-41
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-64
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-34
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-64
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-58
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-55
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-41
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-62
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-40
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-36
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-54
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-47
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-53
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-29
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-52
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-49
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-40
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-48
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-41
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-48
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-47
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-43
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-37
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-44
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-36
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-42
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-40
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-40
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-36
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-39
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-14
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-37
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-37
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-36
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-32
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-28
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-35
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-24
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-22
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-35
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-33
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-31
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-25
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-21
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-31
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-27
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-31
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-29
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-29
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-26
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-20
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-17
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-18
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-29
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-26
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-28
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-24
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-23
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-20
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-15
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-24
3m19_A	251	Variable lymphocyte receptor A diversity region; a	2e-23
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-22
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-17
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-23
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-22
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-22
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-20
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	6e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-19
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-16
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-20
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-14
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-19
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-15
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	9e-12
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-15
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-14
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-15
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-16
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-15
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-14
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-11
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	5e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-13
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-12
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-11
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	1e-11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	6e-10
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-04
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	8e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-06
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	2e-09
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	6e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	6e-09
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	4e-08
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-06
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	1e-05
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	6e-09
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	2e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-05
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	6e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	5e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	8e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	6e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  243 bits (621), Expect = 5e-74
 Identities = 85/394 (21%), Positives = 151/394 (38%), Gaps = 13/394 (3%)

Query: 23  STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL 81
           S +D +          +P       + L L  NRIKT++      +  L+ ++L+     
Sbjct: 10  SAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS 69

Query: 82  IIPIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLT 139
            +  G F     L  L L  N+    P  +   + +  +++I  +N+I  +    F+ L 
Sbjct: 70  AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDI-SENKIVILLDYMFQDLY 128

Query: 140 ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL 199
            L+ L + DN L  +   +F  L  L +L +     T++   A + L  L  L LR   +
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188

Query: 200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 259
             I D +F+ L  L+ L ++        T        L  L I     + +     + L 
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248

Query: 260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
           YL+ L ++  + ++ +      + L L+ + L    +L  +E  A  GL  L  LN+  N
Sbjct: 249 YLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGN 306

Query: 320 AFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAPLKYK 376
             T+  ES+      L T+ +  NP+ C C +LW+     R   N     C +P  ++ K
Sbjct: 307 QLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFVQGK 366

Query: 377 SLISLS----AEDLGCAGAGLTNISDNAFRGLSG 406
                          C  A + +          G
Sbjct: 367 EFKDFPDVLLPNYFTCRRARIRDRKAQQVFVDEG 400

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  231 bits (590), Expect = 2e-69
 Identities = 95/442 (21%), Positives = 153/442 (34%), Gaps = 82/442 (18%)

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
           R +     +  +VP            L +G N   TL    F     L  L+L    ++ 
Sbjct: 14  RAVLCHRKRFVAVPEGIPTET---RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA 70

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           +   AF  L  LR+L L  NRL+ IP    + L+ L +L+I +N   +L    F+ L  L
Sbjct: 71  VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
           K LE+   ++L  +   AF+   +LE LTL K   L +I   AL  L             
Sbjct: 131 KSLEVGD-NDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHL------------- 175

Query: 322 TSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISL 381
                       L  + +    I                                     
Sbjct: 176 ----------HGLIVLRLRHLNI------------------------------------- 188

Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
                         I D +F+ L  L+ L ++        T        L  L I     
Sbjct: 189 ------------NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL 236

Query: 442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG 501
           + +     + L YL+ L ++  + ++ +      + L L+ + L    +L ++E  A  G
Sbjct: 237 TAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRG 294

Query: 502 LPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVR--RNTSA 558
           L  L  LN+  N  T+  ES+      L T+ +  NP+ C C +LW+     R   N   
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQ 354

Query: 559 VFCNSPAPLKYKSLISLSAEDL 580
             C +P  ++ K         L
Sbjct: 355 PTCATPEFVQGKEFKDFPDVLL 376

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  218 bits (558), Expect = 4e-65
 Identities = 93/372 (25%), Positives = 136/372 (36%), Gaps = 80/372 (21%)

Query: 23  STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
           S +          L  +P     + + L L  N I+                        
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQM----------------------- 89

Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
           I    F     L  LQL  N                        I +I+   F GL +L 
Sbjct: 90  IQADTFRHLHHLEVLQLGRN-----------------------SIRQIEVGAFNGLASLN 126

Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTN 201
            L L DN L  +P+ +F YL  L EL +  N   ++   AFN +  L  LDL     L  
Sbjct: 127 TLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           IS+ AF GL  L+ L L    ++ +P   L+ L  LEELE+  N F  +  G F GLS  
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIKDMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLS-- 242

Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
                                  +L+ L +  + ++  IE  A  GL +L  LNL  N  
Sbjct: 243 -----------------------SLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNL 278

Query: 322 TSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYK 376
           +S    +      L  + +  NP  C C+ILWL   L       +T    C++P  ++ +
Sbjct: 279 SSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGR 338

Query: 377 SLISLSAEDLGC 388
            L+ +      C
Sbjct: 339 YLVEVDQASFQC 350

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  171 bits (434), Expect = 2e-47
 Identities = 78/375 (20%), Positives = 133/375 (35%), Gaps = 89/375 (23%)

Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
              +V T   L  +P   +   +    L + +N   M++A  F+ L              
Sbjct: 56  FSKVVCTRRGLSEVPQG-IP--SNTRYLNLMENNIQMIQADTFRHLH------------- 99

Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-W 331
                       +LE L L +N  ++ IE GA  GL +L  L L +N  T          
Sbjct: 100 ------------HLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146

Query: 332 PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
            +LR + +  NPI                                               
Sbjct: 147 SKLRELWLRNNPI----------------------------------------------- 159

Query: 392 GLTNISDNAFRGLSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
              +I   AF  +  L  L L +  +L+ I       L  L+ L +G      +      
Sbjct: 160 --ESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN--LT 215

Query: 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
            L  L+ LE++G ++   +R G+F    +L+ L +  + ++ +IE +A  GL +L  LNL
Sbjct: 216 PLVGLEELEMSG-NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNL 273

Query: 511 KENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPA 565
             N  +S    +      L  + +  NP  C C+ILWL   L       +T    C++P 
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPM 333

Query: 566 PLKYKSLISLSAEDL 580
            ++ + L+ +     
Sbjct: 334 HMRGRYLVEVDQASF 348

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  153 bits (388), Expect = 5e-41
 Identities = 66/300 (22%), Positives = 97/300 (32%), Gaps = 56/300 (18%)

Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
              +      L  VP            L +  N    +    F  L  L  L L    + 
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSNT---RYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            I   AF GL+ L +L L DN L  IP+     L++L EL +  N    + +  F  +  
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
           L RL++     L  + +GAF    NL+ L L     +K +    L  L  L  L +  N 
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMP--NLTPLVGLEELEMSGNH 229

Query: 321 FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
           F             L+ + +  + +                                   
Sbjct: 230 FPEIRPGSFHGLSSLKKLWVMNSQV----------------------------------- 254

Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
                         + I  NAF GL+ L  L L  N L S+P    + L  L EL +  N
Sbjct: 255 --------------SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  219 bits (561), Expect = 4e-64
 Identities = 118/611 (19%), Positives = 195/611 (31%), Gaps = 69/611 (11%)

Query: 19  PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSH 77
           P      + +    +  L  +P     S + + LS N +K +   +   +  LQ +DLS 
Sbjct: 6   PCIEVVPNITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSR 65

Query: 78  TTWLIIPIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIF--GQNRISRIDQA 133
                I    +     L  L L  N    F      S      +E     + +++ ++  
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG---SFSGLTSLENLVAVETKLASLESF 122

Query: 134 CFEGLTALRILYLDDNQLRSVPTP-SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA- 191
               L  L+ L +  N + S   P  F  L  L  + +  N   T+       L      
Sbjct: 123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQV 182

Query: 192 ---LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS-IPTKQLSKLTRLEELEIGQNGF 247
              LD+    +  I D AF+G+  L  L L  N   S I    L  L  L    +    F
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241

Query: 248 ------SMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTI 300
                  + E    +GL  +   E               F    N+  ++L     +K +
Sbjct: 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYL 300

Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLV-- 358
           E+           L++       F    L  P L+++ +  N        + L  +    
Sbjct: 301 EDVP--KHFKWQSLSIIRCQLKQFPTLDL--PFLKSLTLTMNKGSISFKKVALPSLSYLD 356

Query: 359 -RRNT-SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
             RN  S   C S + L   SL  L   DL  +  G   +S   F GL  L+ L    + 
Sbjct: 357 LSRNALSFSGCCSYSDLGTNSLRHL---DL--SFNGAIIMS-ANFMGLEELQHLDFQHST 410

Query: 417 LQSIPTKQ-LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 475
           L+ +        L +L  L+I      +   G F GL+ L  L++ G S         FA
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 476 DNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA----------- 524
           +  NL  L L+K  +L+ I       L  L  LN+  N       S              
Sbjct: 471 NTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 525 --------------WPELRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFCNSPA 565
                            L   ++  N + C C      + +  +         + C +P 
Sbjct: 530 FNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPV 589

Query: 566 PLKYKSLISLS 576
            +    ++  +
Sbjct: 590 EMNTSLVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  137 bits (346), Expect = 2e-34
 Identities = 60/375 (16%), Positives = 117/375 (31%), Gaps = 85/375 (22%)

Query: 18  EPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
           E      +  S ++    L   P+   P ++ L L+ N+       + +  SL ++DLS 
Sbjct: 301 EDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP-SLSYLDLSR 359

Query: 78  TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE- 136
                                                          N +S      +  
Sbjct: 360 -----------------------------------------------NALSFSGCCSYSD 372

Query: 137 -GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
            G  +LR L L  N    +                            F GL  L  LD +
Sbjct: 373 LGTNSLRHLDLSFNGAIIMS-------------------------ANFMGLEELQHLDFQ 407

Query: 196 GAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF-SMLEAG 253
            + L  +++ +AF  L  L  L ++    +         LT L  L++  N F     + 
Sbjct: 408 HSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467

Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
            F   + L  L+++    L ++  G F     L+ L ++ N  L  ++      L +L  
Sbjct: 468 VFANTTNLTFLDLSK-CQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLST 525

Query: 314 LNLKENAFTSFSESMLAWPE-LRTIDIAENPIECGCNILWLREMLVRRNT-----SAVFC 367
           L+   N   +    +  +P+ L   ++  N + C C      + +  +         + C
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC 585

Query: 368 NSPAPLKYKSLISLS 382
            +P  +    ++  +
Sbjct: 586 ATPVEMNTSLVLDFN 600

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  219 bits (561), Expect = 6e-64
 Identities = 110/570 (19%), Positives = 203/570 (35%), Gaps = 77/570 (13%)

Query: 30  NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPI 85
            L    L  +   +     +++ L      I ++    +    +L+ + L       I +
Sbjct: 87  VLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 86  GGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI-FGQNRISRIDQACFEGLTALR 142
               P EKL  L   +N   +  ++ + S+     + +    N I+ I+   F+     +
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAV-FQ 205

Query: 143 ILYLDDNQLRSVPTP--SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS--ALDLRGAG 198
            L     Q   V         +  L            ++   F GL  +S  +++L+   
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
             NIS N F   SGL+ L LT   L  +P   L  L+ L++L +  N F  L        
Sbjct: 266 FFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLKKLVLSANKFENLCQISASNF 324

Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE--EGALVGLPNLYHLNL 316
             L  L I G +    +  G   +  NL  L L+ +  ++T +     L  L +L  LNL
Sbjct: 325 PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNL 383

Query: 317 KENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 375
             N   S         P+L  +D+A   ++                              
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLK------------------------------ 413

Query: 376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
                                + + F+ L  L+ L L+ + L     +    L  L+ L 
Sbjct: 414 ------------------VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455

Query: 436 IGQN---GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
           +  N     ++ +    + L  L+ L ++   +L+ + + AF     +  + L+ N +L 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSF-CDLSSIDQHAFTSLKMMNHVDLSHN-RLT 513

Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREML 551
               +AL  L  +Y LNL  N  +    S+L    + RTI++ +NP++C C+ ++  E  
Sbjct: 514 SSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWY 572

Query: 552 VRRNT-----SAVFCNSPAPLKYKSLISLS 576
                         C +P  L+   L  ++
Sbjct: 573 KENMQKLEDTEDTLCENPPLLRGVRLSDVT 602

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  203 bits (518), Expect = 6e-58
 Identities = 106/528 (20%), Positives = 171/528 (32%), Gaps = 70/528 (13%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIG 86
           + N +   L+ IP     S + L  S N + T+ +      ++L  +DL+      I   
Sbjct: 16  TYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 87  GFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144
            F+ Q +L  L L  N      +  +    + + +  F Q  IS ID         L  L
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF-FIQTGISSIDFIPLHNQKTLESL 134

Query: 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG--LTNI 202
           YL  N + S+  P       L  L    N    L+    + L + + L L   G  +  I
Sbjct: 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194

Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSMLEAGCFKGLSY 260
              AF      +SL     +   +  K L    +  L            +    F+GL  
Sbjct: 195 EPGAFDSAV-FQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253

Query: 261 LKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
           +    I    +    +    F     L+ L L     L  +  G LVGL  L  L L  N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSG-LVGLSTLKKLVLSAN 311

Query: 320 AFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
            F +  +   +  P L  + I  N                                    
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTK---------------------------------- 337

Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEI 436
                            +       L  LR L L+ + +++      QL  L+ L+ L +
Sbjct: 338 --------------RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKIIE 495
             N    L+   FK    L+ L++   + L     +  F +   L+ L L+ +  L I  
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAF-TRLKVKDAQSPFQNLHLLKVLNLSHS-LLDISS 441

Query: 496 EDALVGLPNLYHLNLKENAFTSFSESMLAW----PELRTIDIAENPIE 539
           E    GLP L HLNL+ N F   +            L  + ++   + 
Sbjct: 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  196 bits (500), Expect = 2e-55
 Identities = 85/410 (20%), Positives = 144/410 (35%), Gaps = 23/410 (5%)

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
           +    ++  L  +P            L    NV  T+ +  F+ L  L+ LDL    +  
Sbjct: 15  KTYNCENLGLNEIPGTLPNS---TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           I ++ F+    L +LVLT N L  +    LS    L+ L   Q G S ++         L
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTL 131

Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL--YHLNLKEN 319
           + L +   ++++ ++         L+ L    N  +  + +  +  L       LNL  N
Sbjct: 132 ESLYLGS-NHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGN 189

Query: 320 AFTSFSESMLAWPELRTIDIAENPIEC-------GCNILWLREMLVRRNTSAVFCNSPAP 372
                          ++++                  I  L                 +P
Sbjct: 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD----EDISP 245

Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
             ++ L  +S E +        NIS N F   SGL+ L LT   L  +P   L  L+ L+
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-SGLVGLSTLK 304

Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
           +L +  N F  L          L  L I G +    +  G   +  NL  L L+ +  ++
Sbjct: 305 KLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD-DIE 363

Query: 493 IIE--EDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIE 539
             +     L  L +L  LNL  N   S         P+L  +D+A   ++
Sbjct: 364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  213 bits (543), Expect = 5e-63
 Identities = 95/379 (25%), Positives = 143/379 (37%), Gaps = 80/379 (21%)

Query: 23  STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
           S +         NL  +P   + + + L L  N+I+                        
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQI----------------------- 78

Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
           I +  F+    L  LQL+ N                        I  I+   F GL  L 
Sbjct: 79  IKVNSFKHLRHLEILQLSRN-----------------------HIRTIEIGAFNGLANLN 115

Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA-GLTN 201
            L L DN+L ++P  +F+YL  L EL +  N   ++   AFN +  L  LDL     L+ 
Sbjct: 116 TLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           IS+ AF GLS LR L L    L+ IP   L+ L +L+EL++  N  S +  G F+GL   
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLREIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLM-- 231

Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
                                  +L+ L + ++ +++ IE  A   L +L  +NL  N  
Sbjct: 232 -----------------------HLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNL 267

Query: 322 TSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYK 376
           T     +      L  I +  NP  C C+ILWL   +             CN+P  LK +
Sbjct: 268 TLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGR 327

Query: 377 SLISLSAEDLGCAGAGLTN 395
            +  L      C    +  
Sbjct: 328 YIGELDQNYFTCYAPVIVE 346

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  167 bits (424), Expect = 4e-46
 Identities = 79/377 (20%), Positives = 136/377 (36%), Gaps = 89/377 (23%)

Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
           +    ++     L+ +P   +S  T    L + +N   +++   FK L            
Sbjct: 43  NQFSKVICVRKNLREVPDG-IS--TNTRLLNLHENQIQIIKVNSFKHLR----------- 88

Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
                         +LE L L++N  ++TIE GA  GL NL  L L +N  T+       
Sbjct: 89  --------------HLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFV 133

Query: 331 W-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
           +  +L+ + +  NPI                                             
Sbjct: 134 YLSKLKELWLRNNPI--------------------------------------------- 148

Query: 390 GAGLTNISDNAFRGLSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
                +I   AF  +  LR L L +  RL  I       L+ L  L +       +    
Sbjct: 149 ----ESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-- 202

Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
              L  L  L+++G ++L+ +R G+F   ++L+ L + ++ ++++IE +A   L +L  +
Sbjct: 203 LTPLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEI 260

Query: 509 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNS 563
           NL  N  T     +      L  I +  NP  C C+ILWL   +             CN+
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNT 320

Query: 564 PAPLKYKSLISLSAEDL 580
           P  LK + +  L     
Sbjct: 321 PPNLKGRYIGELDQNYF 337

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  152 bits (386), Expect = 8e-41
 Identities = 66/300 (22%), Positives = 101/300 (33%), Gaps = 56/300 (18%)

Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
              +      LR VP            L +  N    +   +F  L  L  L L    + 
Sbjct: 45  FSKVICVRKNLREVPDGISTNT---RLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            I   AF GL+ L +L L DNRL +IP      L++L+EL +  N    + +  F  +  
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
           L+RL++     L+ + +GAF    NL  L L     L+ I    L  L  L  L+L  N 
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP--NLTPLIKLDELDLSGNH 218

Query: 321 FTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
            ++           L+ + + ++ I                                   
Sbjct: 219 LSAIRPGSFQGLMHLQKLWMIQSQI----------------------------------- 243

Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
                           I  NAF  L  L  + L  N L  +P    + L  LE + +  N
Sbjct: 244 --------------QVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  218 bits (556), Expect = 8e-62
 Identities = 121/618 (19%), Positives = 225/618 (36%), Gaps = 85/618 (13%)

Query: 29  CNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSA-----------------IPIYL--- 68
              +  NL  +P     + +RL+LS N I+TV ++                  P+ +   
Sbjct: 9   AFYRFCNLTQVPQV-LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE 67

Query: 69  ------SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISP-RRVEI 121
                 +L+ +DL  +    +    F+    L EL+L         +        + +  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 122 --FGQNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGM--LAELRVGLNVFT 176
               +N+I  +     F  L +L+ +    NQ+  V       L    L+   +  N   
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLY 187

Query: 177 TLADGAFNGLG------RLSALDLRGAGLTNISDNAF------------RGLSGLRSLVL 218
           +     +           L  LD+ G G T      F                 +     
Sbjct: 188 SRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

Query: 219 TDNRLQSIPTKQLSKLTR--LEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
             + ++       + L R  +  L++       L +  F+ L  LK L +   + + ++ 
Sbjct: 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAY-NKINKIA 306

Query: 277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELR 335
             AF    NL+ L L+ N  L  +      GLP + +++L++N      +    +  +L+
Sbjct: 307 DEAFYGLDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQ 365

Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
           T+D+ +N +     I  + ++ +  N                 I+L+A  +  +   L N
Sbjct: 366 TLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPK----------INLTANLIHLSENRLEN 415

Query: 396 ISDNAF-RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGF-----SMLEAGC 448
           +    F   +  L+ L+L  NR  S    Q  S+   LE+L +G+N       + L    
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
           F+GLS+L+ L +   + L  +  G F+    L  L+LN N +L ++  + L    NL  L
Sbjct: 476 FEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDL--PANLEIL 531

Query: 509 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML------VRRNTSAVFCN 562
           ++  N   + +  +     L  +DI  N   C C +      L      +    + ++C 
Sbjct: 532 DISRNQLLAPNPDVF--VSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCV 589

Query: 563 SPAPLKYKSLISLSAEDL 580
            P      SL SLS E  
Sbjct: 590 YPDSFSGVSLFSLSTEGC 607

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  206 bits (525), Expect = 3e-59
 Identities = 123/564 (21%), Positives = 196/564 (34%), Gaps = 74/564 (13%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
              E N   IP +   S + L LS N ++ +   +   +  LQ +DLS      I  G +
Sbjct: 13  QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
           +    L  L L  N                        I  +    F GL++L+ L   +
Sbjct: 73  QSLSHLSTLILTGNP-----------------------IQSLALGAFSGLSSLQKLVAVE 109

Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG-AFNGLGRLSALDLRGAGLTNISDNAF 207
             L S+      +L  L EL V  N+  +      F+ L  L  LDL    + +I     
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169

Query: 208 RGLSGLR----SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCFKGLSYLK 262
           R L  +     SL L+ N +  I      ++ RL +L +  N  S+ +   C +GL+ L+
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 263 RL-----EITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN 315
                  E     NL +  K A     NL +E   L                L N+   +
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 316 LKENAFTSFSESMLAW--------------------PELRTIDIAENPIE---CGCNILW 352
           L         +    +                      L+ +    N         ++  
Sbjct: 289 LVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 348

Query: 353 LREMLVRRNT-SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLV 411
           L  + + RN  S   C S +     SL  L       +  G+  +S N F GL  L  L 
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD-----LSFNGVITMSSN-FLGLEQLEHLD 402

Query: 412 LTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 470
              + L+ +        L  L  L+I      +   G F GLS L+ L++ G ++     
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG-NSFQENF 461

Query: 471 KGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PEL 528
                  L NL  L L++  +L+ +   A   L +L  LN+  N   S  + +      L
Sbjct: 462 LPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520

Query: 529 RTIDIAENPIECGCN-ILWLREML 551
           + I +  NP +C C  I +L   L
Sbjct: 521 QKIWLHTNPWDCSCPRIDYLSRWL 544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  192 bits (491), Expect = 3e-57
 Identities = 77/268 (28%), Positives = 113/268 (42%), Gaps = 30/268 (11%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAF 183
           NRIS +  A F     L IL+L  N L  +   +F  L +L +L +  N    ++    F
Sbjct: 42  NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
           +GLGRL  L L   GL  +    FRGL+ L+ L L DN LQ++P      L  L  L + 
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161

Query: 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEG 303
            N  S +    F+GL                          +L+ L L++N ++  +   
Sbjct: 162 GNRISSVPERAFRGLH-------------------------SLDRLLLHQN-RVAHVHPH 195

Query: 304 ALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLV--RR 360
           A   L  L  L L  N  ++     LA    L+ + + +NP  C C    L   L   R 
Sbjct: 196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRG 255

Query: 361 NTSAVFCNSPAPLKYKSLISLSAEDLGC 388
           ++S V C+ P  L  + L  L+A DL  
Sbjct: 256 SSSEVPCSLPQRLAGRDLKRLAANDLQG 283

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  147 bits (374), Expect = 2e-40
 Identities = 70/315 (22%), Positives = 107/315 (33%), Gaps = 81/315 (25%)

Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA-FTSFSESML 329
            ++ V   +F    NL  L L+ N  L  I+  A  GL  L  L+L +NA   S   +  
Sbjct: 43  RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101

Query: 330 AW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
                L T+ +    +                                            
Sbjct: 102 HGLGRLHTLHLDRCGL-------------------------------------------- 117

Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
                  +    FRGL+ L+ L L DN LQ++P      L  L  L +  N  S +    
Sbjct: 118 -----QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
           F+GL                          +L+ L L++N ++  +   A   L  L  L
Sbjct: 173 FRGLH-------------------------SLDRLLLHQN-RVAHVHPHAFRDLGRLMTL 206

Query: 509 NLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLV--RRNTSAVFCNSPA 565
            L  N  ++     LA    L+ + + +NP  C C    L   L   R ++S V C+ P 
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQ 266

Query: 566 PLKYKSLISLSAEDL 580
            L  + L  L+A DL
Sbjct: 267 RLAGRDLKRLAANDL 281

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  134 bits (340), Expect = 9e-36
 Identities = 54/272 (19%), Positives = 92/272 (33%), Gaps = 54/272 (19%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
                 GL  +        +  + + L  NR+  +P         L  L +  N  + ++
Sbjct: 16  TSCPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
           A  F GL+ L++L+++  + L  V    F     L TL L++   L+ +  G   GL  L
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAAL 131

Query: 312 YHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSP 370
            +L L++NA  +  +        L  + +  N I                          
Sbjct: 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-------------------------- 165

Query: 371 APLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR 430
                                  +++ + AFRGL  L  L+L  NR+  +       L R
Sbjct: 166 -----------------------SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGR 202

Query: 431 LEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
           L  L +  N  S L       L  L+ L +  
Sbjct: 203 LMTLYLFANNLSALPTEALAPLRALQYLRLND 234

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 97.4 bits (243), Expect = 1e-22
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 5/153 (3%)

Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
           C   GL  +        +  + + L  NR+  +P         L  L +  N  + ++A 
Sbjct: 18  CPQQGLQAVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74

Query: 448 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH 507
            F GL+ L++L+++  + L  V    F     L TL L++   L+ +      GL  L +
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQY 133

Query: 508 LNLKENAFTSFSESMLAW-PELRTIDIAENPIE 539
           L L++NA  +  +        L  + +  N I 
Sbjct: 134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  194 bits (496), Expect = 3e-54
 Identities = 105/523 (20%), Positives = 197/523 (37%), Gaps = 78/523 (14%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
           +     L  +P     +I  L L+ N+++ +  +    Y  L  +D+             
Sbjct: 10  DCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGF----------- 58

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
                                               N IS+++    + L  L++L L  
Sbjct: 59  ------------------------------------NTISKLEPELCQKLPMLKVLNLQH 82

Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
           N+L  +   +F +   L EL +  N    + +  F     L  LDL   GL++       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 209 GLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
            L  L+ L+L++N++Q++ +++L     + L++LE+  N       GCF  +  L  L +
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 267 TGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKTIEEGALVGL--PNLYHLNLKENAFT 322
                   + +    +  N ++  L+L+ + +L T      +GL   NL  L+L  N   
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261

Query: 323 SFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISL 381
                  AW P+L    +  N I              +   S         ++Y +L   
Sbjct: 262 VVGNDSFAWLPQLEYFFLEYNNI--------------QHLFSHSLHGLFN-VRYLNL-KR 305

Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
           S      + A L  I D +F+ L  L  L + DN +  I +   + L  L+ L +  +  
Sbjct: 306 SFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFT 365

Query: 442 SM--LEAGCFKGL--SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
           S+  L    F  L  S L  L +T  + ++++   AF+   +LE L L  N   + +   
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTK-NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424

Query: 498 ALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIE 539
              GL N++ + L  N +   + +  A  P L+ + +    ++
Sbjct: 425 EWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALK 467

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  175 bits (445), Expect = 2e-47
 Identities = 97/584 (16%), Positives = 190/584 (32%), Gaps = 102/584 (17%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSH---TTWLII 83
           +  +Q    + +   +N S+++L LS+N+IK         +  L  + L++      L  
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE 213

Query: 84  PIGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI-FGQNRISRIDQACFEGLTA 140
            +        +  L L++++           +       +    N ++ +    F  L  
Sbjct: 214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQ 273

Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELR---------VGLNVFTTLADGAFNGLGRLSA 191
           L   +L+ N ++ + + S   L  +  L          + L     + D +F  L  L  
Sbjct: 274 LEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ--SIPTKQLSKL--TRLEELEIGQNGF 247
           L++    +  I  N F GL  L+ L L+++     ++  +    L  + L  L + +N  
Sbjct: 334 LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
           S +E+  F  L +L+ L++        +    +    N+  + L+ N K   +   +   
Sbjct: 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLTRNSFAL 452

Query: 308 LPNLYHLNLKENAFTSFSESMLAW---PELRTIDIAENPIECGCNILWLREMLVRRNTSA 364
           +P+L  L L+  A  +   S   +     L  +D++ N I                    
Sbjct: 453 VPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIA--------------NINDD 498

Query: 365 VFCNSPAPLKYKSLISLSAED---LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 421
           +            L  L  +                    +GLS L  L L  N    IP
Sbjct: 499 MLEGLE------KLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552

Query: 422 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
            +    L  L+ +++G N  + L A  F                             +L+
Sbjct: 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQV-------------------------SLK 587

Query: 482 TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
           +L L KN  +  +E+                               L  +D+  NP +C 
Sbjct: 588 SLNLQKN-LITSVEKKVFGPAF----------------------RNLTELDMRFNPFDCT 624

Query: 542 C-NILWLREML------VRRNTSAVFCNSPAPLKYKSLISLSAE 578
           C +I W    +      +   +S   CN+P       +      
Sbjct: 625 CESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTS 668

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  186 bits (473), Expect = 7e-53
 Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 65/440 (14%)

Query: 148 DNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL-TNISDN 205
           +  L  VP  P+ +       + + LN    L + +F+ L  L  L +        I +N
Sbjct: 19  NRGLHQVPELPAHV-----NYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN 73

Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF--SMLEAGCFKGLSYLKR 263
            FRGLS L  L L  N+   + T   + L  LE L + Q     ++L    FK L+ L+ 
Sbjct: 74  TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEM 133

Query: 264 LEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLP--NLYHLNLKENA 320
           L +   +N+ +++  +F  N+     L L  N  +K+I E  L+     +   L L    
Sbjct: 134 LVLRD-NNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSIT 191

Query: 321 FTSFSESMLAWPE---------LRTIDIAENPIEC--------GCNILWLREMLVRRNTS 363
               +E  L W +         + T+D++ N  +               ++ +++  + +
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 364 AVFC------NSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRL 417
                       P    +K L +   +    + + +  +  + F   + L  L L  N +
Sbjct: 252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEI 311

Query: 418 QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN 477
             I       LT L +L + QN    +++  F+ L                         
Sbjct: 312 NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD------------------------ 347

Query: 478 LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAEN 536
             LE L L+ N  ++ + + + +GLPNL  L L  N   S  + +      L+ I +  N
Sbjct: 348 -KLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405

Query: 537 PIECGCN-ILWLREMLVRRN 555
           P +C C  I +L   L + +
Sbjct: 406 PWDCSCPRIDYLSRWLNKNS 425

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  121 bits (304), Expect = 1e-29
 Identities = 52/281 (18%), Positives = 94/281 (33%), Gaps = 52/281 (18%)

Query: 42  HSNPSIQRLVLSTNRIKTVDSAI--------PIYLSLQHVDLSHTTWLII---PIGGFEP 90
            +      L L+ N++K++               L L  + L       +     G    
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210

Query: 91  QEKLVELQLNHNK--HFPQQIVCSIISPRRVEI------------FGQNRISRIDQACFE 136
              +  L L+ N       +     I+  +++             FG       D   F+
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270

Query: 137 GL--TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
           GL  + ++   L  +++ ++    F +   L +L +  N    + D AF GL  L  L+L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
               L +I    F  L  L  L L+ N ++++  +    L  L+EL +  N         
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN--------- 381

Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
                            L  V  G F    +L+ + L+ NP
Sbjct: 382 ----------------QLKSVPDGIFDRLTSLQKIWLHTNP 406

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  186 bits (473), Expect = 4e-52
 Identities = 97/574 (16%), Positives = 189/574 (32%), Gaps = 80/574 (13%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIG 86
            C+ +  +   IPS    +++ L LS N+I  +    +    +LQ + L  +    I   
Sbjct: 9   VCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68

Query: 87  GFEPQEKLVELQLNHNK-----------------------HFPQQIVCSIISP----RRV 119
            F     L  L L+ N                         +    V S+       + +
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
            I      S I +  F GLT+L  L +    LR+  + S   +  +  L + L+    L 
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
           +   + L  +  L+LR   L     +          +     R   +  +  ++L +L  
Sbjct: 189 EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL-- 246

Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
                     L    F   + L  L     S    V +    + + +  L + +   L  
Sbjct: 247 ----LRYILELSEVEFDDCT-LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-YLFY 300

Query: 300 IEEGALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLV 358
                   L  +  + ++ +       S       L  +D++EN +              
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM-------------- 346

Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD--NAFRGLSGLRSLVLTDNR 416
                    NS     + SL +L    L  +   L ++         L  L SL ++ N 
Sbjct: 347 ---VEEYLKNSACKGAWPSLQTL---VL--SQNHLRSMQKTGEILLTLKNLTSLDISRNT 398

Query: 417 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 476
              +P        ++  L +   G  +++    + L  L         +++     +F+ 
Sbjct: 399 FHPMPD-SCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVL---------DVSNNNLDSFSL 448

Query: 477 NL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIA 534
            L  L+ L +++N KLK + + +L   P L  + +  N   S  + +      L+ I + 
Sbjct: 449 FLPRLQELYISRN-KLKTLPDASL--FPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505

Query: 535 ENPIECGCN-ILWLREML---VRRNTSAVFCNSP 564
            NP +C C  I +L   L    ++   +  C+  
Sbjct: 506 TNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 539

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  115 bits (289), Expect = 2e-27
 Identities = 56/355 (15%), Positives = 111/355 (31%), Gaps = 40/355 (11%)

Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
                         SIP+   + +     L++  N  + +  G  +  + L+ L +   S
Sbjct: 5   DASGVCDGRSRSFTSIPSGLTAAMK---SLDLSFNKITYIGHGDLRACANLQVLILKS-S 60

Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML- 329
            +  +   AF    +LE L L+ N  L ++       L +L +LNL  N + +   + L 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 330 -AWPELRTIDIAEN------PIECGCNILWLREMLVRRNT-SAVFCNSPAPLKYKSLISL 381
                L+T+ I                +  L E+ ++  +       S   ++    ++L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
                    +    + +     LS +R L L D  L       L        ++      
Sbjct: 180 H-------LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

Query: 442 SMLEAGCFKGLSYLKR-----------------LEITGASNLTRVRKGAFADNLNLETLT 484
           S+L    F  L  L R                 L     S    V +    + + +  L 
Sbjct: 233 SVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH 292

Query: 485 LNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPI 538
           + +   L          L  +  + ++ +       S       L  +D++EN +
Sbjct: 293 IPQF-YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM 346

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  172 bits (439), Expect = 2e-49
 Identities = 65/371 (17%), Positives = 122/371 (32%), Gaps = 76/371 (20%)

Query: 19  PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
           PSR S            L  +P+    S  RL L +N++++                   
Sbjct: 2   PSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQS------------------- 42

Query: 79  TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
               +P G F+   +L +L L+ N                                  G 
Sbjct: 43  ----LPHGVFDKLTQLTKLSLSSNGL---------------------SFKGCCSQSDFGT 77

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGA 197
           T+L+ L L  N + ++   +F+ L  L  L    +    +     F  L  L  LD+   
Sbjct: 78  TSLKYLDLSFNGVITMS-SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 256
                 +  F GLS L  L +  N   ++      ++L  L  L++ Q     L    F 
Sbjct: 137 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196

Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
            LS L+ L ++  +N   +    +    +L+ L  + N  + T ++  L   P+      
Sbjct: 197 SLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSS----- 249

Query: 317 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPA 371
                            L  +++ +N   C C      + +  +         + C +P+
Sbjct: 250 -----------------LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292

Query: 372 PLKYKSLISLS 382
             +   ++SL+
Sbjct: 293 DKQGMPVLSLN 303

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  146 bits (370), Expect = 9e-40
 Identities = 61/372 (16%), Positives = 115/372 (30%), Gaps = 87/372 (23%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
             +      L S+PT   S  TRLE   +  N    L  G F  L+              
Sbjct: 10  TEIRCNSKGLTSVPTGIPSSATRLE---LESNKLQSLPHGVFDKLT-------------- 52

Query: 274 RVRKGAFADNLNLETLTLNKNP-KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
                       L  L+L+ N    K     +  G  +L +L+L  N   + S + L   
Sbjct: 53  -----------QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 101

Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
           +L  +D   + ++                                               
Sbjct: 102 QLEHLDFQHSNLK----------------------------------------------- 114

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF-SMLEAGCFKG 451
                 + F  L  L  L ++    +       + L+ LE L++  N F        F  
Sbjct: 115 -QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
           L  L  L+++    L ++   AF    +L+ L ++ N     ++      L +L  L+  
Sbjct: 174 LRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS 231

Query: 512 ENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSP 564
            N   +  +  L      L  +++ +N   C C      + +  +         + C +P
Sbjct: 232 LNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291

Query: 565 APLKYKSLISLS 576
           +  +   ++SL+
Sbjct: 292 SDKQGMPVLSLN 303

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  171 bits (436), Expect = 3e-48
 Identities = 74/432 (17%), Positives = 135/432 (31%), Gaps = 70/432 (16%)

Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
                 +++D            I L     +    +    L     +   ++  L+L   
Sbjct: 20  DCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
            +  I   AF     ++ L +  N ++ +P      +  L  L + +N  S L  G F  
Sbjct: 80  QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHN 139

Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
              L  L ++  +NL R+    F    +L+ L L+ N +L  ++   +   P+L+H N+ 
Sbjct: 140 TPKLTTLSMSN-NNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLI---PSLFHANVS 194

Query: 318 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
            N  ++ +        +  +D + N I                       N         
Sbjct: 195 YNLLSTLAIP----IAVEELDASHNSI-----------------------NVVRGPVNVE 227

Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
           L  L           LT+ +        GL  + L+ N L+ I      K+ RLE L I 
Sbjct: 228 LTILK-----LQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
            N    L                                   L+ L L+ N  L  +E +
Sbjct: 281 NNRLVALNL--------------------------YGQPIPTLKVLDLSHN-HLLHVERN 313

Query: 498 ALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML-VRRNT 556
                  L +L L  N+  +   S      L+ + ++ N  +C       R +     + 
Sbjct: 314 QP-QFDRLENLYLDHNSIVTLKLSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDD 370

Query: 557 SAVFCNSPAPLK 568
           +   C     L+
Sbjct: 371 ADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  153 bits (388), Expect = 2e-41
 Identities = 63/426 (14%), Positives = 128/426 (30%), Gaps = 90/426 (21%)

Query: 8   ELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPI 66
           +   KC++          D   ++Q  ++          + + +    + ++ + +A+  
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 67  YL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN 125
               ++ ++L+      I    F     + +L +                         N
Sbjct: 67  SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGF-----------------------N 103

Query: 126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG 185
            I  +    F+ +  L +L L+ N L S+P   F     L  L +  N    + D  F  
Sbjct: 104 AIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA 163

Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
              L  L L    LT++  +       L    ++ N L ++          +EEL+   N
Sbjct: 164 TTSLQNLQLSSNRLTHVDLSLI---PSLFHANVSYNLLSTLA-----IPIAVEELDASHN 215

Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
             +++       L+ LK        NLT        +   L  + L+ N +L+ I     
Sbjct: 216 SINVVRGPVNVELTILKLQHN----NLTDT--AWLLNYPGLVEVDLSYN-ELEKIMYHPF 268

Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
           V +  L  L +  N   + +      P L+ +D++ N +                     
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL--------------------- 307

Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
                                        ++  N       L +L L  N + ++     
Sbjct: 308 ----------------------------LHVERNQP-QFDRLENLYLDHNSIVTLKLSTH 338

Query: 426 SKLTRL 431
             L  L
Sbjct: 339 HTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  149 bits (377), Expect = 5e-40
 Identities = 67/350 (19%), Positives = 121/350 (34%), Gaps = 47/350 (13%)

Query: 30  NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPI 85
           NL +  ++ I +++     +IQ+L +  N I+ +   +   +  L  + L       +P 
Sbjct: 75  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 86  GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
           G F    KL  L +++                       N + RI+   F+  T+L+ L 
Sbjct: 135 GIFHNTPKLTTLSMSN-----------------------NNLERIEDDTFQATTSLQNLQ 171

Query: 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205
           L  N+L  V       +  L    V  N+ +TLA         +  LD     +  +   
Sbjct: 172 LSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAI-----PIAVEELDASHNSINVVRGP 223

Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
                  L  L L  N L       L     L E+++  N    +    F  +  L+RL 
Sbjct: 224 VN---VELTILKLQHNNLTDTAW--LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278

Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
           I+  + L  +          L+ L L+ N  L  +E         L +L L  N+  +  
Sbjct: 279 ISN-NRLVALN-LYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLENLYLDHNSIVTLK 334

Query: 326 ESMLAWPELRTIDIAENPIECGCNILWLREML-VRRNTSAVFCNSPAPLK 374
            S      L+ + ++ N  +C       R +     + +   C     L+
Sbjct: 335 LSTH--HTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 382

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  175 bits (446), Expect = 7e-48
 Identities = 119/629 (18%), Positives = 205/629 (32%), Gaps = 101/629 (16%)

Query: 18  EPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLS 76
           EP      + +    E N   IP +   S + L LS N ++ +   +   +  LQ +DLS
Sbjct: 1   EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 77  HTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE 136
                 I  G ++    L  L L                         N I  +    F 
Sbjct: 61  RCEIQTIEDGAYQSLSHLSTLILTG-----------------------NPIQSLALGAFS 97

Query: 137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLR 195
           GL++L+ L   +  L S+      +L  L EL V  N+  +      F+ L  L  LDL 
Sbjct: 98  GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 196 GAGLTNISDNAFRGLSGLR----SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-L 250
              + +I     R L  +     SL L+ N +  I      ++ RL +L +  N  S+ +
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNV 216

Query: 251 EAGCFKGLS-----YLKRLEITGASNLTRVRKGAFAD--NLNLETLTLNKNPKLKTIEEG 303
              C +GL+      L   E     NL +  K A     NL +E   L            
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIID 276

Query: 304 ALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 363
               L N+   +L         +    +   + +++           L L+ +     TS
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPT-LKLKSLKRLTFTS 334

Query: 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK 423
               N+ + +   SL  L   DL   G         +  G + L+ L L+ N + ++ + 
Sbjct: 335 NKGGNAFSEVDLPSLEFL---DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS- 390

Query: 424 QLSKLTRLEELEIGQNGFS-MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET 482
               L +LE L+   +    M E   F  L  L  L+I+  ++      G F    +LE 
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH-THTRVAFNGIFNGLSSLEV 449

Query: 483 LTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAEN----- 536
           L +  N   +    D    L NL  L+L +      S +       L+ ++++ N     
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509

Query: 537 --------------------------------------------PIECGCNILWLREMLV 552
                                                          C C      + + 
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK 569

Query: 553 RRNT-----SAVFCNSPAPLKYKSLISLS 576
            +         + C +P+  +   ++SL+
Sbjct: 570 DQRQLLVEVERMECATPSDKQGMPVLSLN 598

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  167 bits (425), Expect = 5e-47
 Identities = 71/360 (19%), Positives = 116/360 (32%), Gaps = 62/360 (17%)

Query: 25  RDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP 84
           R+  C     +L+ IPS    +++ L LS NRI                         I 
Sbjct: 32  RNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-----------------------IS 68

Query: 85  IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144
               +    L  L L  N                        I+ I++  F  L +L  L
Sbjct: 69  NSDLQRCVNLQALVLTSNG-----------------------INTIEEDSFSSLGSLEHL 105

Query: 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDL-RGAGLTNI 202
            L  N L ++ +  F  L  L  L +  N + TL +   F+ L +L  L +      T I
Sbjct: 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165

Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
               F GL+ L  L +  + LQS   K L  +  +  L +      +L        S ++
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVE 225

Query: 263 RLEITG-------ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN 315
            LE+          S L+     +         + +             L  +  L  L 
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDES--LFQVMKLLNQISGLLELE 283

Query: 316 LKENAFTSFSESMLA-WPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAVFCNSP 370
              N   S  + +      L+ I +  NP +C C  I +L   L +   +   +  C+  
Sbjct: 284 FSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGS 343

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  156 bits (395), Expect = 9e-43
 Identities = 68/382 (17%), Positives = 117/382 (30%), Gaps = 85/382 (22%)

Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 252
                 L +I          ++SL L++NR+  I    L +   L+ L +  NG + +E 
Sbjct: 37  KGSSGSLNSIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 253 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLY 312
             F  L                          +LE L L+ N  L  +       L +L 
Sbjct: 94  DSFSSLG-------------------------SLEHLDLSYN-YLSNLSSSWFKPLSSLT 127

Query: 313 HLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
            LNL  N + +  E+                                    ++F +    
Sbjct: 128 FLNLLGNPYKTLGET------------------------------------SLFSH---- 147

Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
                L  L    +G      T I    F GL+ L  L +  + LQS   K L  +  + 
Sbjct: 148 -----LTKLQILRVGN-MDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVS 201

Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITG----ASNLTRVRKGAFADNLNLETLTLNKN 488
            L +      +L        S ++ LE+        + + +  G     +   T    K 
Sbjct: 202 HLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI 261

Query: 489 PKLKIIE-EDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCN-IL 545
               + +    L  +  L  L    N   S  + +      L+ I +  NP +C C  I 
Sbjct: 262 TDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321

Query: 546 WLREMLVR---RNTSAVFCNSP 564
           +L   L +   +   +  C+  
Sbjct: 322 YLSRWLNKNSQKEQGSAKCSGS 343

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  141 bits (358), Expect = 1e-37
 Identities = 69/303 (22%), Positives = 120/303 (39%), Gaps = 45/303 (14%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
            A++ L L +N++  +          L  L +  N   T+ + +F+ LG L  LDL    
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQNG-FSMLEAGCFK 256
           L+N+S + F+ LS L  L L  N  +++  T   S LT+L+ L +G    F+ ++   F 
Sbjct: 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
           GL++L+ LEI  AS+L      +     N+  L L+       + E  +    ++  L L
Sbjct: 172 GLTFLEELEI-DASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLEL 229

Query: 317 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 376
           ++    +F  S L                                 S    NS       
Sbjct: 230 RDTDLDTFHFSEL---------------------------------STGETNSLIKKFTF 256

Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
             + ++ E L                 +SGL  L  + N+L+S+P     +LT L+++ +
Sbjct: 257 RNVKITDESL--------FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWL 308

Query: 437 GQN 439
             N
Sbjct: 309 HTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 25/136 (18%), Positives = 53/136 (38%), Gaps = 7/136 (5%)

Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
                    +   L SIP+        ++ L++  N  + +     +    L+ L +T  
Sbjct: 30  CDRNGICKGSSGSLNSIPS---GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTS- 85

Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
           + +  + + +F+   +LE L L+ N  L  +       L +L  LNL  N + +  E+ L
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 524 --AWPELRTIDIAENP 537
                +L+ + +    
Sbjct: 145 FSHLTKLQILRVGNMD 160

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  160 bits (406), Expect = 1e-44
 Identities = 80/398 (20%), Positives = 134/398 (33%), Gaps = 111/398 (27%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
                +  L+ +P    P    L L  N+I                         I  G 
Sbjct: 35  VVQCSDLGLEKVPKDLPPDTALLDLQNNKITE-----------------------IKDGD 71

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
           F+  + L  L L +NK                       IS+I    F  L  L  LYL 
Sbjct: 72  FKNLKNLHTLILINNK-----------------------ISKISPGAFAPLVKLERLYLS 108

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN--ISDN 205
            NQL+ +P         L ELRV  N  T +    FNGL ++  ++L    L +  I + 
Sbjct: 109 KNQLKELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENG 165

Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
           AF+G+  L  + + D  + +IP      LT   EL +  N  + ++A   KGL+ L +L 
Sbjct: 166 AFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
           ++  ++++ V  G+ A+  +L  L LN N KL  +  G L     +  + L  N  ++  
Sbjct: 223 LSF-NSISAVDNGSLANTPHLRELHLNNN-KLVKV-PGGLADHKYIQVVYLHNNNISAIG 279

Query: 326 ESMLA-------WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
            +                + +  NP++                                 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQ--------------------------------- 306

Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
                            I  + FR +    ++ L + +
Sbjct: 307 --------------YWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  149 bits (379), Expect = 9e-41
 Identities = 73/380 (19%), Positives = 126/380 (33%), Gaps = 90/380 (23%)

Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
           LR++   D  L  VP                L   T L             LDL+   +T
Sbjct: 33  LRVVQCSDLGLEKVPK--------------DLPPDTAL-------------LDLQNNKIT 65

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            I D  F+ L  L +L+L +N++  I     + L +LE L + +N    L     K L  
Sbjct: 66  EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQE 125

Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKTIEEGALVGLPNLYHLNLKEN 319
           L R+     + +T+VRK  F     +  + L  NP K   IE GA  G+  L ++ + + 
Sbjct: 126 L-RVH---ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 181

Query: 320 AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLI 379
             T+  + +   P L  + +  N I                                   
Sbjct: 182 NITTIPQGLP--PSLTELHLDGNKI----------------------------------- 204

Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
                         T +   + +GL+ L  L L+ N + ++    L+    L EL +  N
Sbjct: 205 --------------TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN 250

Query: 440 GFSMLEAGCFKGLSYLKRL-----EITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKI 493
               +  G      Y++ +      I+   +      G      +   ++L  NP +   
Sbjct: 251 KLVKVPGG-LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 494 IEEDALVGLPNLYHLNLKEN 513
           I+      +     + L   
Sbjct: 310 IQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  137 bits (348), Expect = 2e-36
 Identities = 58/360 (16%), Positives = 111/360 (30%), Gaps = 75/360 (20%)

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           L  +     GL  +  +          L L +N++  I       L  L  L +  N  S
Sbjct: 33  LRVVQCSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
            +  G F  L  L+RL ++  + L  + +        L+ L +++N ++  + +    GL
Sbjct: 90  KISPGAFAPLVKLERLYLSK-NQLKELPEKMPK---TLQELRVHEN-EITKVRKSVFNGL 144

Query: 309 PNLYHLNLKENAFTSFSESMLAW---PELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
             +  + L  N   S      A+    +L  I IA+  I                     
Sbjct: 145 NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI--------------------- 183

Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
                                       T I          L  L L  N++  +    L
Sbjct: 184 ----------------------------TTIPQGLP---PSLTELHLDGNKITKVDAASL 212

Query: 426 SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485
             L  L +L +  N  S ++ G      +L+ L +   + L +V  G  AD+  ++ + L
Sbjct: 213 KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-NKLVKV-PGGLADHKYIQVVYL 270

Query: 486 NKNPKLKIIEEDA------LVGLPNLYHLNLKENAFTSFSESMLAW---PELRTIDIAEN 536
           + N  +  I  +            +   ++L  N    +      +        + +   
Sbjct: 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  112 bits (281), Expect = 2e-27
 Identities = 65/330 (19%), Positives = 107/330 (32%), Gaps = 89/330 (26%)

Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
           LR +  +D  L+ +P   L   T    L++  N  + ++ G FK L              
Sbjct: 33  LRVVQCSDLGLEKVPKD-LPPDTA--LLDLQNNKITEIKDGDFKNLK------------- 76

Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
                       NL TL L  N K+  I  GA   L  L  L L +N      E M    
Sbjct: 77  ------------NLHTLILINN-KISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--K 121

Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
            L+ + + EN I                                                
Sbjct: 122 TLQELRVHENEI------------------------------------------------ 133

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
            T +  + F GL+ +  + L  N L+S  I       + +L  + I     + +  G   
Sbjct: 134 -TKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 192

Query: 451 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
            L+ L  L+     N +T+V   +     NL  L L+ N  +  ++  +L   P+L  L+
Sbjct: 193 SLTEL-HLD----GNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELH 246

Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPIE 539
           L  N        +     ++ + +  N I 
Sbjct: 247 LNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  160 bits (405), Expect = 2e-42
 Identities = 70/509 (13%), Positives = 143/509 (28%), Gaps = 140/509 (27%)

Query: 43  SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHN 102
                  +       K +DS +        V +   T  +              +   ++
Sbjct: 2   GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61

Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
                                   + ++  A  +    + +L L+D Q+  + T +F Y 
Sbjct: 62  T-----------------------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 98

Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
             + +L +G N    L    F  +  L+ L L    L+++    F     L +L +++N 
Sbjct: 99  HTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN 158

Query: 223 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
           L+ I        T L+ L++  N  + ++      L +          N++       A 
Sbjct: 159 LERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---------NVSYNLLSTLAI 209

Query: 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 342
            + +E L  + N  +  +          L  L L+ N  T  +  +L +P L  +D++ N
Sbjct: 210 PIAVEELDASHN-SINVVRGPV---NVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN 264

Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
            +                                                   I  + F 
Sbjct: 265 EL-------------------------------------------------EKIMYHPFV 275

Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
            +  L  L +++NRL ++                                          
Sbjct: 276 KMQRLERLYISNNRLVALN----------------------------------------- 294

Query: 463 ASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 522
                            L+ L L+ N  L  +E +       L +L L  N+  +   S 
Sbjct: 295 ---------LYGQPIPTLKVLDLSHN-HLLHVERNQP-QFDRLENLYLDHNSIVTLKLST 343

Query: 523 LAWPELRTIDIAENPIECGCNILWLREML 551
                L+ + ++ N  +C       R + 
Sbjct: 344 H--HTLKNLTLSHNDWDCNSLRALFRNVA 370

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (306), Expect = 2e-29
 Identities = 84/553 (15%), Positives = 163/553 (29%), Gaps = 84/553 (15%)

Query: 30  NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPI 85
           NL +  ++ I +++     +IQ+L +  N I+ +   +   +  L  + L       +P 
Sbjct: 81  NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 86  GGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLT---- 139
           G F    KL  L +++N           +  S + +++   NR++ +D +    L     
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL-SSNRLTHVDLSLIPSLFHANV 199

Query: 140 ------------ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG 187
                       A+  L    N +  V  P  + L     L++  N  T           
Sbjct: 200 SYNLLSTLAIPIAVEELDASHNSINVVRGPVNVEL---TILKLQHNNLTDT--AWLLNYP 254

Query: 188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
            L  +DL    L  I  + F  +  L  L +++NRL ++       +  L+ L++  N  
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPTLKVLDLSHNHL 313

Query: 248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
             +E                                  LE L L+ N  + T++      
Sbjct: 314 LHVERNQP---------------QFD-----------RLENLYLDHN-SIVTLKLST--- 343

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW---------LREMLV 358
              L +L L  N +   S   L +  +    + +    C  +             +  L 
Sbjct: 344 HHTLKNLTLSHNDWDCNSLRAL-FRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLD 402

Query: 359 RRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRL- 417
           R        +    ++       + + +    +    I+      L G   L    N L 
Sbjct: 403 RLLQYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

Query: 418 --------------QSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
                         Q +        T L    + ++G +       K  ++LK  +    
Sbjct: 463 AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKL 522

Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
                 R  A A     E L        K ++             +LK            
Sbjct: 523 RETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKN 582

Query: 524 AWPELRTIDIAEN 536
             P+ R +    +
Sbjct: 583 RNPDTRRVSHHHH 595

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  149 bits (378), Expect = 1e-40
 Identities = 73/378 (19%), Positives = 120/378 (31%), Gaps = 87/378 (23%)

Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
           LR++   D  L++VP            L +  N  + L    F GL  L AL L    ++
Sbjct: 35  LRVVQCSDLGLKAVPKEISPDT---TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            I + AF  L  L+ L ++ N L  IP    S L    EL I  N    +  G F GL  
Sbjct: 92  KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLV---ELRIHDNRIRKVPKGVFSGLRN 148

Query: 261 LKRLEITGASN---LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
           +  +E+    N    +    GAF D L L  L +++  KL  I +        L  L+L 
Sbjct: 149 MNCIEM--GGNPLENSGFEPGAF-DGLKLNYLRISEA-KLTGIPKDL---PETLNELHLD 201

Query: 318 ENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 376
            N   +     L  + +L  + +  N I                                
Sbjct: 202 HNKIQAIELEDLLRYSKLYRLGLGHNQI-------------------------------- 229

Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
                              I + +   L  LR L L +N+L  +P   L  L  L+ + +
Sbjct: 230 -----------------RMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYL 271

Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-KLKIIE 495
             N  + +    F  + +  +                         ++L  NP     ++
Sbjct: 272 HTNNITKVGVNDFCPVGFGVKR-------------------AYYNGISLFNNPVPYWEVQ 312

Query: 496 EDALVGLPNLYHLNLKEN 513
                 + +   +     
Sbjct: 313 PATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  149 bits (377), Expect = 2e-40
 Identities = 60/305 (19%), Positives = 102/305 (33%), Gaps = 24/305 (7%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIG 86
                +  L  +P   +P    L L  N I  +          L  + L +     I   
Sbjct: 37  VVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEK 96

Query: 87  GFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI--FGQNRISRIDQACFEGLTALR 142
            F P  KL +L ++ N     P  +      P  +       NRI ++ +  F GL  + 
Sbjct: 97  AFSPLRKLQKLYISKNHLVEIPPNL------PSSLVELRIHDNRIRKVPKGVFSGLRNMN 150

Query: 143 ILYLDDNQLRSVPTPSFIYLGM-LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
            + +  N L +       + G+ L  LR+     T +          L+ L L    +  
Sbjct: 151 CIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQA 207

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           I        S L  L L  N+++ I    LS L  L EL +  N  S + AG    L  L
Sbjct: 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLL 266

Query: 262 KRLEITGASNLTRVRKGAFAD------NLNLETLTLNKNP-KLKTIEEGALVGLPNLYHL 314
           + + +   +N+T+V    F              ++L  NP     ++      + +   +
Sbjct: 267 QVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325

Query: 315 NLKEN 319
                
Sbjct: 326 QFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  135 bits (343), Expect = 9e-36
 Identities = 65/290 (22%), Positives = 107/290 (36%), Gaps = 24/290 (8%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
               +L L +N +  +    F  L  L  L +  N  + + + AF+ L +L  L +    
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN--GFSMLEAGCFK 256
           L  I  N       L  L + DNR++ +P    S L  +  +E+G N    S  E G F 
Sbjct: 114 LVEIPPNLPS---SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
           GL  L  L I+ A  LT + K        L  L L+ N K++ IE   L+    LY L L
Sbjct: 171 GLK-LNYLRISEA-KLTGIPKDLPE---TLNELHLDHN-KIQAIELEDLLRYSKLYRLGL 224

Query: 317 KENAFTSFSESMLA-WPELRTIDIAENPIEC---------GCNILWLREMLVRRNTSAVF 366
             N         L+  P LR + +  N +              +++L    + +     F
Sbjct: 225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284

Query: 367 CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
           C     +K      +    L         +    FR ++   ++   + +
Sbjct: 285 CPVGFGVKRAYYNGI---SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  104 bits (262), Expect = 8e-25
 Identities = 65/367 (17%), Positives = 111/367 (30%), Gaps = 104/367 (28%)

Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
           LR +  +D  L+++P + +S  T L  L++  N  S L    FKGL              
Sbjct: 35  LRVVQCSDLGLKAVPKE-ISPDTTL--LDLQNNDISELRKDDFKGLQ------------- 78

Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
                       +L  L L  N K+  I E A   L  L  L + +N       ++    
Sbjct: 79  ------------HLYALVLVNN-KISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--S 123

Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
            L  + I +N I                                                
Sbjct: 124 SLVELRIHDNRI------------------------------------------------ 135

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
              +    F GL  +  + +  N L++          L +L  L I +   + +     +
Sbjct: 136 -RKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPE 193

Query: 451 GLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
            L+ L  L+     N +  +          L  L L  N ++++IE  +L  LP L  L+
Sbjct: 194 TLNEL-HLD----HNKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELH 247

Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY 569
           L  N  +     +     L+ + +  N I               +     FC     +K 
Sbjct: 248 LDNNKLSRVPAGLPDLKLLQVVYLHTNNI--------------TKVGVNDFCPVGFGVKR 293

Query: 570 KSLISLS 576
                +S
Sbjct: 294 AYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 6e-05
 Identities = 19/117 (16%), Positives = 43/117 (36%), Gaps = 13/117 (11%)

Query: 45  PSIQRLVLSTNRIKTVDSAIPIYL-SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK 103
             + RL L  N+I+ +++    +L +L+ + L +     +P  G    + L  + L+ N 
Sbjct: 217 SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP-AGLPDLKLLQVVYLHTNN 275

Query: 104 --HFPQQIVCSIISP------RRVEIFGQNRIS--RIDQACFEGLTALRILYLDDNQ 150
                    C +           + +F  N +    +  A F  +T    +   + +
Sbjct: 276 ITKVGVNDFCPVGFGVKRAYYNGISLFN-NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  151 bits (383), Expect = 7e-39
 Identities = 84/564 (14%), Positives = 171/564 (30%), Gaps = 82/564 (14%)

Query: 45  PSIQRLVLSTNRIKTVDSAIP---IYLSLQHVDLSHTTWLIIPIGGFEPQE----KLVEL 97
             ++ L   T+             +   +              +     Q      L++ 
Sbjct: 347 TELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD 406

Query: 98  QLNHNKHFPQQIVCSIISPRRVEIFG-QNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
            +N N         S IS +  +I    NRI+ I +A  + LT L+I+Y  ++       
Sbjct: 407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNI 465

Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
                     +            + +++ L  L+ ++L          +    L  L+SL
Sbjct: 466 AVD-----WEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSL 520

Query: 217 VLTDNRLQSIP---------TKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEI 266
            +  NR  S                   +++   +G N       +   + +  L  L+ 
Sbjct: 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDC 580

Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
              + +  +   AF  N+ L  L L+ N +++ I E        +  L    N       
Sbjct: 581 VH-NKVRHLE--AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPN 636

Query: 327 SMLAW--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAE 384
              A     + ++D + N I                   +   N    +     I+ S  
Sbjct: 637 IFNAKSVYVMGSVDFSYNKI------------------GSEGRNISCSMDDYKGINASTV 678

Query: 385 DLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP-------TKQLSKLTRLEELEIG 437
            L      +       F   S + +++L++N + SIP                L  +++ 
Sbjct: 679 TLS--YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLR 736

Query: 438 QNGFSML-EAGCFKGLSYLKRLEI---------TGASNLTRVRKGAFADNLNL-ETLTLN 486
            N  + L +      L YL  +++         T   N ++++         +       
Sbjct: 737 FNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKA------FGIRHQRDAE 790

Query: 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG----- 541
            N  L+      +   P+L  L +  N      E +   P+L  +DIA+NP         
Sbjct: 791 GNRILRQWPT-GITTCPSLIQLQIGSNDIRKVDEKLT--PQLYILDIADNPNISIDVTSV 847

Query: 542 CNILWLREMLVRRNTSAVFCNSPA 565
           C  +     ++  + +       A
Sbjct: 848 CPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  124 bits (312), Expect = 8e-30
 Identities = 66/414 (15%), Positives = 129/414 (31%), Gaps = 59/414 (14%)

Query: 69  SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK--------HFPQQIVCSIISPRRVE 120
            L  V+L +   +           +L  L +  N+            ++     +  +++
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 121 IF--GQNRISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT 177
           IF  G N +      A  + +  L +L    N++R +   +F     L +L++  N    
Sbjct: 552 IFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEE 609

Query: 178 LADGAFNGLGRLSALDLRGAGLTNISDNA-FRGLSGLRSLVLTDNRLQSIPTKQLS---- 232
           + +       ++  L      L  I +    + +  + S+  + N++ S           
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669

Query: 233 -KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG------ASNLTRVRKGAFADNLN 285
            K      + +  N         F   S +  + ++         N  + + G + +   
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 286 LETLTLNKNPKLKTI-EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
           L T+ L  N KL ++ ++     LP L ++++  N F+SF    L   +L+   I     
Sbjct: 730 LTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRD 788

Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG- 403
             G  IL        R         P      SLI L              I  N  R  
Sbjct: 789 AEGNRIL--------RQWPTGITTCP------SLIQL-------------QIGSNDIRKV 821

Query: 404 ----LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
                  L  L + DN   SI    +          +  +    +      G+ 
Sbjct: 822 DEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  121 bits (306), Expect = 4e-29
 Identities = 70/498 (14%), Positives = 145/498 (29%), Gaps = 93/498 (18%)

Query: 74  DLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQA 133
           +     W   P    +   ++  L L                                  
Sbjct: 305 NKELDMWGDQPGVDLDNNGRVTGLSLAGFG-----------------------AKGRVPD 341

Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTLADGAFNGLGRLSAL 192
               LT L++L    +                       + +         +   RL+  
Sbjct: 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401

Query: 193 DLRGAGLTNISDNAFRGLSGLRSLVLTD-------NRLQSIPTKQLSKLTRLEELEIGQN 245
           DL    +        + +     + L D       NR+  I  K + +LT+L+ +    +
Sbjct: 402 DLLQDAINRN--PEMKPIKKDSRISLKDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANS 458

Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
            F+          +                 + ++++  +L  + L   P +  + +  L
Sbjct: 459 PFTYDNIAVDWEDANSDYA------KQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FL 511

Query: 306 VGLPNLYHLNLKENAFTSFSESMLAW----------PELRTIDIAENPIECGCNILWLRE 355
             LP L  LN+  N   S ++    W          P+++   +  N +E          
Sbjct: 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE---------- 561

Query: 356 MLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN 415
                         PA    + ++ L    L C    + ++   AF     L  L L  N
Sbjct: 562 ------------EFPASASLQKMVKL--GLLDCVHNKVRHLE--AFGTNVKLTDLKLDYN 605

Query: 416 RLQSIPTKQLSKLTRLEELEIGQNGFSML-EAGCFKGLSYLKRLEITGASNLTRVRKGAF 474
           +++ IP    +   ++E L    N    +      K +  +  ++ +  + +    +   
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSY-NKIGSEGRNIS 664

Query: 475 ADN-----LNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA----- 524
                   +N  T+TL+ N +++    +       +  + L  N  TS  E+ L      
Sbjct: 665 CSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

Query: 525 ---WPELRTIDIAENPIE 539
                 L TID+  N + 
Sbjct: 724 YKNTYLLTTIDLRFNKLT 741

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 34/249 (13%), Positives = 69/249 (27%), Gaps = 27/249 (10%)

Query: 35  NLDVIPS----HSNPSIQRLVLSTNRIKTVDSAIPI------YLSLQHVDLSHTTWLIIP 84
            L  IP+     S   +  +  S N+I +    I         ++   V LS+      P
Sbjct: 630 KLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFP 689

Query: 85  IGGFEPQEKLVELQLNHNK------HFPQQIVCSIISPRRVEI--FGQNRISRI-DQACF 135
              F     +  + L++N       +  +    +  +   +       N+++ + D    
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 136 EGLTALRILYLDDNQLRSVPT-----PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS 190
             L  L  + +  N   S PT           G+  +     N               L 
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 191 ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML 250
            L +    +  + +        L  L + DN   SI    +          +  +    +
Sbjct: 810 QLQIGSNDIRKVDEKL---TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866

Query: 251 EAGCFKGLS 259
                 G+ 
Sbjct: 867 RGCDALGIE 875

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.9 bits (132), Expect = 5e-08
 Identities = 26/166 (15%), Positives = 58/166 (34%), Gaps = 6/166 (3%)

Query: 395 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG--- 451
           +           +  L L     +      + +LT L+ L  G +  ++           
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELT 372

Query: 452 --LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLN 509
             +S  ++  I        +      +  +L    +N+NP++K I++D+ + L +    N
Sbjct: 373 PDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGN 432

Query: 510 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN 555
           L  N  T  S+++    +L+ I  A +P       +   +      
Sbjct: 433 L-TNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA 477

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 26/194 (13%), Positives = 50/194 (25%), Gaps = 47/194 (24%)

Query: 45  PSIQRLVLSTNRIKTVDSAIPI--YLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHN 102
             +  + L  N++ ++           L ++D+S+  +   P        +L    + H 
Sbjct: 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS-QLKAFGIRHQ 786

Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
           +                     NRI R          +L  L +  N +R V        
Sbjct: 787 R-----------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE------ 823

Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
                                    +L  LD+      +I   +          VL  ++
Sbjct: 824 ---------------------KLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

Query: 223 LQSIPTKQLSKLTR 236
            Q I       + R
Sbjct: 863 TQDIRGCDALGIER 876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score =  138 bits (350), Expect = 3e-37
 Identities = 67/361 (18%), Positives = 118/361 (32%), Gaps = 103/361 (28%)

Query: 18  EPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
           EP      + +    E N   IP +   S + L LS N ++                   
Sbjct: 1   EPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRH------------------ 42

Query: 78  TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG 137
                +    F    +L  L L+  +                       I  I+   ++ 
Sbjct: 43  -----LGSYSFFSFPELQVLDLSRCE-----------------------IQTIEDGAYQS 74

Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           L+ L  L L  N ++S+                          GAF+GL  L  L     
Sbjct: 75  LSHLSTLILTGNPIQSLAL------------------------GAFSGLSSLQKLVAVET 110

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFK 256
            L ++ +     L  L+ L +  N +QS    +  S LT LE L++  N    +     +
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170

Query: 257 GLSYLKRLEIT---GASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
            L  +  L ++     + +  ++ GAF   + L+ L L+ N +LK++ +G    L +L  
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELALDTN-QLKSVPDGIFDRLTSLQK 228

Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVR---RNTSAVFCNS 369
           + L                         NP +C C  I +L   L +   +   +  C+ 
Sbjct: 229 IWL-----------------------HTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSG 265

Query: 370 P 370
            
Sbjct: 266 S 266

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 98.1 bits (245), Expect = 6e-23
 Identities = 48/206 (23%), Positives = 77/206 (37%), Gaps = 37/206 (17%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           +  I D A++ LS L +L+LT N +QS+     S L+ L++L   +   + LE      L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 453 SYLKRLEITGASN-LTRV-RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL----Y 506
             LK L +  A N +        F++  NLE L L+ N K++ I    L  L  +     
Sbjct: 124 KTLKELNV--AHNLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNL 180

Query: 507 HLNLKENAFTSFSESMLA------------------------WPELRTIDIAENPIECGC 542
            L+L  N                                      L+ I +  NP +C C
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240

Query: 543 N-ILWLREMLVR---RNTSAVFCNSP 564
             I +L   L +   +   +  C+  
Sbjct: 241 PRIDYLSRWLNKNSQKEQGSAKCSGS 266

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  142 bits (359), Expect = 9e-37
 Identities = 56/431 (12%), Positives = 124/431 (28%), Gaps = 48/431 (11%)

Query: 69  SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS 128
             +   ++ ++         +    + EL L+ N                        +S
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-----------------------LS 47

Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
           +I  A     T L +L L  N L          L  L  L +  N    L          
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPS 100

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           +  L      ++ +S +  +   G +++ L +N++  +        +R++ L++  N   
Sbjct: 101 IETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 249 MLEAG-CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
            +           L+ L +     +  V+         L+TL L+ N KL  +       
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFA--KLKTLDLSSN-KLAFMGP-EFQS 212

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC 367
              +  ++L+ N      +++     L   D+  N   CG    +  +         V  
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ---RVQTVAK 269

Query: 368 NSPAPLKYKSLISLSA-EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 426
            +   L  ++    +             ++       L  L+         Q   T++L 
Sbjct: 270 QTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLE 329

Query: 427 K----LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET 482
                  R  E++  +  +  +             LE      L          +  L+ 
Sbjct: 330 CERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKK-KALDEQVSNGRRAHAELDG 388

Query: 483 LTLNKNPKLKI 493
                  ++++
Sbjct: 389 TLQQAVGQIEL 399

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (284), Expect = 6e-27
 Identities = 64/412 (15%), Positives = 121/412 (29%), Gaps = 75/412 (18%)

Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
            +     +I  + D+ L+                                    +  LDL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQAL------------------------ASLRQSAWNVKELDL 41

Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
            G  L+ IS       + L  L L+ N L       L  L+ L  L++  N    L    
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97

Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
                 ++ L     +N++RV           + + L  N K+  + +        + +L
Sbjct: 98  ---GPSIETLHAAN-NNISRVSCSRGQ---GKKNIYLANN-KITMLRDLDEGCRSRVQYL 149

Query: 315 NLKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
           +LK N   + + + LA     L  +++  N I                       +    
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY----------------------DVKGQ 187

Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
           + +  L +L   DL      L  +    F+  +G+  + L +N+L  I  K L     LE
Sbjct: 188 VVFAKLKTL---DLS--SNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-KALRFSQNLE 240

Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
             ++  NGF       F   S  +R++      + ++      +               +
Sbjct: 241 HFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAY-CCE 297

Query: 493 IIEEDALVGLPNLY-----HLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
            +       L  L       L+ + +               R ID  +    
Sbjct: 298 DLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYR 349

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  105 bits (264), Expect = 2e-24
 Identities = 51/371 (13%), Positives = 106/371 (28%), Gaps = 93/371 (25%)

Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
            +  +  +   +TD+ L+            ++EL++  N  S + A      +       
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT------- 58

Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
                              LE L L+ N  L    +  L  L  L  L+L  N       
Sbjct: 59  ------------------KLELLNLSSN-VLYETLD--LESLSTLRTLDLNNNYVQELLV 97

Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
                P + T+  A N I                                          
Sbjct: 98  G----PSIETLHAANNNI------------------------------------------ 111

Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
                  + +S +  +G    +++ L +N++  +        +R++ L++  N    +  
Sbjct: 112 -------SRVSCSRGQGK---KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 447 G-CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL 505
                    L+ L +     +  V+       L  +TL L+ N KL  +          +
Sbjct: 162 AELAASSDTLEHLNLQYN-FIYDVKGQVVFAKL--KTLDLSSN-KLAFMG-PEFQSAAGV 216

Query: 506 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 565
             ++L+ N      +++     L   D+  N   CG    +  +         V   +  
Sbjct: 217 TWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ---RVQTVAKQTVK 273

Query: 566 PLKYKSLISLS 576
            L  ++    +
Sbjct: 274 KLTGQNEEECT 284

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 28/255 (10%), Positives = 64/255 (25%), Gaps = 7/255 (2%)

Query: 30  NLQEANLDVIPS--HSNPSIQRLVLSTNRIKTVD--SAIPIYLSLQHVDLSHTTWLIIPI 85
           +L+   L +I      + +++   L  N                +Q V       L    
Sbjct: 220 SLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 86  GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE---IFGQNRISRIDQACFEGLTALR 142
                   L        +  P      +I+ +R E   + GQ   +   +   E     R
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQR 339

Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNI 202
            +     Q R+V     +       L                    L     +  G   +
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK 262
                          +     +    +Q  +   + + ++ Q+  + L     +      
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459

Query: 263 RLEITGASNLTRVRK 277
             ++  AS    +++
Sbjct: 460 EADLALASANATLQE 474

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  136 bits (345), Expect = 6e-36
 Identities = 46/254 (18%), Positives = 83/254 (32%), Gaps = 14/254 (5%)

Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRV-GLNVFTTLA 179
           F   ++  I +  F G   L  + +  N  L  +    F  L  L E+R+   N    + 
Sbjct: 37  FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN 96

Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLT-RL 237
             AF  L  L  L +   G+ ++ D           L + DN  + +I       L+   
Sbjct: 97  PEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFES 156

Query: 238 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 297
             L + +NG   +    F G   L  L ++  +NL  +    F        L +++   +
Sbjct: 157 VILWLNKNGIQEIHNSAFNGTQ-LDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-I 214

Query: 298 KTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML 357
            ++    L  L  L   +           ++     L    +   P  C     W R++ 
Sbjct: 215 HSLPSYGLENLKKLRARST--YNLKKLP-TLEKLVALMEASLT-YPSHCCAFANWRRQI- 269

Query: 358 VRRNTSAVFCNSPA 371
              +     CN   
Sbjct: 270 ---SELHPICNKSI 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  125 bits (316), Expect = 6e-32
 Identities = 58/354 (16%), Positives = 98/354 (27%), Gaps = 87/354 (24%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
           R  +  ++++  IP+          EL        +++ G F G   L+++EI+    L 
Sbjct: 12  RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 274 RVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWP 332
            +    F++   L  + + K   L  I   A   LPNL +L +         +   +   
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
           +   +DI +N                                                  
Sbjct: 129 QKVLLDIQDNIN------------------------------------------------ 140

Query: 393 LTNISDNAFRGLSG-LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
           +  I  N+F GLS     L L  N +Q I     +     E      N    L    F G
Sbjct: 141 IHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHG 200

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
            S    L+I+  + +  +      +   L   +     KL       L  L  L   +L 
Sbjct: 201 ASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKL-----PTLEKLVALMEASL- 253

Query: 512 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 565
                                    P  C     W R++    +     CN   
Sbjct: 254 -----------------------TYPSHCCAFANWRRQI----SELHPICNKSI 280

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score =  116 bits (292), Expect = 1e-28
 Identities = 45/251 (17%), Positives = 91/251 (36%), Gaps = 12/251 (4%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL-IIPI 85
               QE+ +  IPS    +   L     +++ +   A   +  L+ +++S    L +I  
Sbjct: 13  VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72

Query: 86  GGFEPQEKLVELQLNHN---KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
             F    KL E+++       +   +   ++ + + + I     I  +            
Sbjct: 73  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKV 131

Query: 143 ILYLDDN-QLRSVPTPSFIYLGM-LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
           +L + DN  + ++   SF+ L      L +  N    + + AFNG             L 
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE 191

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            + ++ F G SG   L ++  R+ S+P+  L  L +L             +    + L  
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK----KLPTLEKLVA 247

Query: 261 LKRLEITGASN 271
           L    +T  S+
Sbjct: 248 LMEASLTYPSH 258

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 89.1 bits (221), Expect = 2e-19
 Identities = 39/182 (21%), Positives = 71/182 (39%), Gaps = 12/182 (6%)

Query: 382 SAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
           S     C  + +T I  +  R       L     +L+ I     S    LE++EI QN  
Sbjct: 10  SNRVFLCQESKVTEIPSDLPR---NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66

Query: 442 -SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV 500
             ++EA  F  L  L  + I  A+NL  +   AF +  NL+ L ++    +K + +   +
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKI 125

Query: 501 GLPNLYHLNLKENAF-TSFSESMLAW--PELRTIDIAENPIEC----GCNILWLREMLVR 553
                  L++++N    +   +       E   + + +N I+       N   L E+ + 
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 554 RN 555
            N
Sbjct: 186 DN 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  133 bits (337), Expect = 2e-35
 Identities = 63/236 (26%), Positives = 95/236 (40%), Gaps = 12/236 (5%)

Query: 133 AC-FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA 191
            C    + +   +  D   L ++P            L +  N+  T +        RL+ 
Sbjct: 3   ICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQ 59

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           L+L  A LT +       L  L +L L+ N+LQS+P      L  L  L++  N  + L 
Sbjct: 60  LNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLP 116

Query: 252 AGCFKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN 310
            G  +GL  L+ L +    N L  +  G       LE L+L  N  L  +  G L GL N
Sbjct: 117 LGALRGLGELQELYL--KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLEN 173

Query: 311 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 366
           L  L L+EN+  +  +       L    +  NP  C C IL+ R  L + N   V+
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  106 bits (266), Expect = 1e-25
 Identities = 47/256 (18%), Positives = 83/256 (32%), Gaps = 54/256 (21%)

Query: 40  PSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQL 99
                 S   +      +  +   +P       + LS        +    P  +L +L L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 100 NHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
           +  +    Q+  ++     +++   N++  +     + L AL +L +  N+L        
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSH-NQLQSLPLL-GQTLPALTVLDVSFNRL-------- 112

Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLT 219
                           T+L  GA  GLG L  L L+G  L  +          L  L L 
Sbjct: 113 ----------------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156

Query: 220 DNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA 279
           +N L  +P   L+ L  L+ L + +N                         +L  + KG 
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQEN-------------------------SLYTIPKGF 191

Query: 280 FADNLNLETLTLNKNP 295
           F  +  L    L+ NP
Sbjct: 192 F-GSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  100 bits (252), Expect = 6e-24
 Identities = 50/169 (29%), Positives = 72/169 (42%), Gaps = 8/169 (4%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           LT +       L  L +L L+ N+LQS+P      L  L  L++  N  + L  G  +GL
Sbjct: 67  LTKLQ--VDGTLPVLGTLDLSHNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 453 SYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
             L+ L +    N L  +  G       LE L+L  N  L  +    L GL NL  L L+
Sbjct: 124 GELQELYL--KGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQ 180

Query: 512 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF 560
           EN+  +  +       L    +  NP  C C IL+ R  L + N   V+
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWL-QDNAENVY 228

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 95.2 bits (237), Expect = 7e-22
 Identities = 50/283 (17%), Positives = 85/283 (30%), Gaps = 82/283 (28%)

Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
              ++    +      L ++P            L + +N             +       
Sbjct: 6   VSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYT------- 55

Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
                              L  L L++  +L  ++      LP L  L+L  N   S   
Sbjct: 56  ------------------RLTQLNLDRA-ELTKLQ--VDGTLPVLGTLDLSHNQLQSLPL 94

Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 386
                P L  +D++ N +                                          
Sbjct: 95  LGQTLPALTVLDVSFNRL------------------------------------------ 112

Query: 387 GCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
                  T++   A RGL  L+ L L  N L+++P   L+   +LE+L +  N  + L A
Sbjct: 113 -------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165

Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 489
           G   GL  L  L +   ++L  + KG F  +  L    L+ NP
Sbjct: 166 GLLNGLENLDTLLLQE-NSLYTIPKGFF-GSHLLPFAFLHGNP 206

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 25/159 (15%), Positives = 46/159 (28%), Gaps = 25/159 (15%)

Query: 401 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
              ++    +      L ++P            L + +N             + L +L +
Sbjct: 6   VSKVASHLEVNCDKRNLTALPP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 461 -----------TGASNLTRVR---------KGAFADNLNLETLTLNKNPKLKIIEEDALV 500
                           L  +                   L  L ++ N +L  +   AL 
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALR 121

Query: 501 GLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPI 538
           GL  L  L LK N   +    +L   P+L  + +A N +
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  136 bits (345), Expect = 9e-35
 Identities = 71/406 (17%), Positives = 140/406 (34%), Gaps = 25/406 (6%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
               IL +  N +  + T   + L  L  L +  N    L    F     L  LDL    
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
           L  IS         L+ L L+ N   ++P  K+   +++L+ L +               
Sbjct: 81  LVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN--KNPKLKTIEEGALVGLPNLYHLN 315
           L+  K L + G +   +        + N E+L +    N +   I + ++  + NL   N
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQ-DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSN 196

Query: 316 LKENAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
           +K     +     L+   +L+T     N         W             F      + 
Sbjct: 197 IKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS-----------FIRILQLVW 245

Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
           + ++   S  ++   G       D +   L  L    +  +      +      + +   
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIK 305

Query: 435 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKII 494
               +G  M+   C   +S    L+ +  + LT            LETL L  N +LK +
Sbjct: 306 NFTVSGTRMVHMLCPSKISPFLHLDFSN-NLLTDTVFENCGHLTELETLILQMN-QLKEL 363

Query: 495 EEDALV--GLPNLYHLNLKENAFTSFS-ESMLAWPE-LRTIDIAEN 536
            + A +   + +L  L++ +N+ +    +   +W + L +++++ N
Sbjct: 364 SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  134 bits (340), Expect = 4e-34
 Identities = 98/562 (17%), Positives = 180/562 (32%), Gaps = 109/562 (19%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
             +  +  L  +P   +     L +S N I            L   D+   +        
Sbjct: 4   LVDRSKNGLIHVPKDLSQKTTILNISQNYIS----------ELWTSDILSLS-------- 45

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
                KL  L ++HN+                       I  +D + F+    L  L L 
Sbjct: 46  -----KLRILIISHNR-----------------------IQYLDISVFKFNQELEYLDLS 77

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNISDNA 206
            N+L  +          L  L +  N F  L     F  + +L  L L    L   S   
Sbjct: 78  HNKLVKIS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLP 134

Query: 207 FRGLSGLR-SLVLTDNRLQSIPTKQLSKL--TRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
              L+  +  LVL +   +    + L       L  +      F  +     K ++ L+ 
Sbjct: 135 IAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194

Query: 264 LEITG----------ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
             I             S L +++      NL L  +    N     I    LV    +++
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN---SFIRILQLVWHTTVWY 251

Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPL 373
            ++                + R  D +            L+ + + +  S VF    + +
Sbjct: 252 FSISNVKLQG-------QLDFRDFDYSGTS---------LKALSIHQVVSDVFGFPQSYI 295

Query: 374 KYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 433
            Y+   +++ ++     +G   +       +S    L  ++N L     +    LT LE 
Sbjct: 296 -YEIFSNMNIKNFTV--SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352

Query: 434 LEIGQNGFSMLE--AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN--- 488
           L +  N    L   A     +  L++L+I+  S     +KG  +   +L +L ++ N   
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT 412

Query: 489 --------PKLKIIE---------EDALVGLPNLYHLNLKENAFTSFSESMLAW-PELRT 530
                   P++K+++            +V L  L  LN+  N   S  + +      L+ 
Sbjct: 413 DTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQK 472

Query: 531 IDIAENPIECGCN-ILWLREML 551
           I +  NP +C C  I +L   L
Sbjct: 473 IWLHTNPWDCSCPRIDYLSRWL 494

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  130 bits (329), Expect = 1e-33
 Identities = 60/254 (23%), Positives = 91/254 (35%), Gaps = 45/254 (17%)

Query: 148 DNQLRSVPT--PSFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISD 204
             QL +VP   PS+      A L +  N  + L A+     L  L +L L    L  IS 
Sbjct: 27  KQQLPNVPQSLPSYT-----ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS 81

Query: 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
            AF  +  LR L L+ N L ++     S L  LE L +  N   +++   F+ ++ L++L
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKL 141

Query: 265 EITGASNLTRVRKGAFADNLN---LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAF 321
            ++    ++R       D      L  L L+ N KLK +    L  LP            
Sbjct: 142 YLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVK-------- 191

Query: 322 TSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF-------CNSPAPLK 374
                          + +  NP+EC C +  L      R  S+V        C     L 
Sbjct: 192 -------------NGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLH 238

Query: 375 YKSLISLSAEDLGC 388
                  S +   C
Sbjct: 239 NI----FSLDFFNC 248

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score =  114 bits (286), Expect = 6e-28
 Identities = 43/194 (22%), Positives = 76/194 (39%), Gaps = 16/194 (8%)

Query: 393 LTNI-SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
           L+ + ++     L+ L SL+L+ N L  I ++    +  L  L++  N    L+   F  
Sbjct: 51  LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVG---LPNLYHL 508
           L  L+ L +   +++  V + AF D   L+ L L++N ++     + +     LP L  L
Sbjct: 111 LQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLL 168

Query: 509 NLKENAFTSFSESM---LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF----- 560
           +L  N       +    L       + +  NP+EC C +  L      R  S+V      
Sbjct: 169 DLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKLYQLFSHWQYRQLSSVMDFQED 228

Query: 561 --CNSPAPLKYKSL 572
             C     L     
Sbjct: 229 LYCMHSKKLHNIFS 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (311), Expect = 2e-31
 Identities = 43/290 (14%), Positives = 91/290 (31%), Gaps = 39/290 (13%)

Query: 69  SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRIS 128
             +   ++ ++         +    + EL L+ N                        +S
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-----------------------LS 47

Query: 129 RIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGR 188
           +I  A     T L +L L  N L          L  L  L +  N    L          
Sbjct: 48  QISAADLAPFTKLELLNLSSNVLYET--LDLESLSTLRTLDLNNNYVQELL-----VGPS 100

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
           +  L      ++ +S +  +   G +++ L +N++  +        +R++ L++  N   
Sbjct: 101 IETLHAANNNISRVSCSRGQ---GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

Query: 249 MLEAGCFKG-LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG 307
            +           L+ L +     +  V+         L+TL L+ N KL  +       
Sbjct: 158 TVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV--FAKLKTLDLSSN-KLAFMGP-EFQS 212

Query: 308 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML 357
              +  ++L+ N      +++     L   D+  N   CG    +  +  
Sbjct: 213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  112 bits (281), Expect = 2e-27
 Identities = 55/370 (14%), Positives = 99/370 (26%), Gaps = 114/370 (30%)

Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
                R     +  + L     +  +    ++ L L+ N L  I    L+  T+LE L +
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
             N          + LS                          L TL LN N  ++ +  
Sbjct: 66  SSNVLYETLD--LESLS-------------------------TLRTLDLNNN-YVQELLV 97

Query: 303 GALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT 362
                 P++  L+   N  +  S S       + I +A N I                  
Sbjct: 98  -----GPSIETLHAANNNISRVSCSRG--QGKKNIYLANNKI------------------ 132

Query: 363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT 422
                                          T + D      S ++ L L  N + ++  
Sbjct: 133 -------------------------------TMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 423 KQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
            +L +    LE L +  N    ++                                  L+
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFA---------------------------KLK 194

Query: 482 TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
           TL L+ N KL  +          +  ++L+ N      +++     L   D+  N   CG
Sbjct: 195 TLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 542 CNILWLREML 551
               +  +  
Sbjct: 253 TLRDFFSKNQ 262

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  110 bits (278), Expect = 4e-27
 Identities = 53/404 (13%), Positives = 110/404 (27%), Gaps = 98/404 (24%)

Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
            +     +I  + D+ L+                                    +  LDL
Sbjct: 6   KQNGNRYKIEKVTDSSLKQAL------------------------ASLRQSAWNVKELDL 41

Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
            G  L+ IS       + L  L L+ N L       L  L+ L  L++  N    L    
Sbjct: 42  SGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-- 97

Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
                 ++ L     +N++RV           + + L  N K+  + +        + +L
Sbjct: 98  ---GPSIETLHAAN-NNISRVSCSRGQ---GKKNIYLANN-KITMLRDLDEGCRSRVQYL 149

Query: 315 NLKENAFTSFSESMLA--WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP 372
           +LK N   + + + LA     L  +++  N I                            
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFI---------------------------- 181

Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
                                 ++        + L++L L+ N+L  +   +      + 
Sbjct: 182 ---------------------YDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVT 217

Query: 433 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 492
            + +  N   ++E    +    L+  ++ G        +  F+ N  ++T+      KL 
Sbjct: 218 WISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL- 275

Query: 493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 536
                           +                   R I +  +
Sbjct: 276 --TGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHH 313

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 92.0 bits (229), Expect = 1e-20
 Identities = 43/324 (13%), Positives = 97/324 (29%), Gaps = 61/324 (18%)

Query: 30  NLQEANLDVIPSHS---NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIG 86
           +L    L  I +        ++ L LS+N +      +    +L+ +DL++       + 
Sbjct: 40  DLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-LDLESLSTLRTLDLNNN-----YVQ 93

Query: 87  GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--------GQNRISRIDQACFEGL 138
                  +  L   +N           IS                 N+I+ +        
Sbjct: 94  ELLVGPSIETLHAANNN----------ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCR 143

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
           + ++ L L  N++ +V                                  L  L+L+   
Sbjct: 144 SRVQYLDLKLNEIDTVNFAEL-----------------------AASSDTLEHLNLQYNF 180

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
           + ++        + L++L L+ N+L  +   +      +  + +  N   ++E    +  
Sbjct: 181 IYDVKGQVV--FAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVLIEKA-LRFS 236

Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318
             L+  ++ G        +  F+ N  ++T+      KL T +      +P L H     
Sbjct: 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL-TGQNEEECTVPTLGHYG--A 293

Query: 319 NAFTSFSESMLAWPELRTIDIAEN 342
                           R I +  +
Sbjct: 294 YCCEDLPAPFA----DRLIALGHH 313

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  119 bits (301), Expect = 4e-31
 Identities = 60/228 (26%), Positives = 91/228 (39%), Gaps = 52/228 (22%)

Query: 167 ELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225
           ELR+  N FT L A G F  L +L  ++     +T+I + AF G SG+  ++LT NRL++
Sbjct: 36  ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285
           +  K    L  L+ L +  N  + +    F GLS                         +
Sbjct: 96  VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLS-------------------------S 130

Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
           +  L+L  N ++ T+  GA   L +L  LNL                         NP  
Sbjct: 131 VRLLSLYDN-QITTVAPGAFDTLHSLSTLNL-----------------------LANPFN 166

Query: 346 CGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
           C C + WL E L ++   T    C  P  LK   +  ++ +D  C  A
Sbjct: 167 CNCYLAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDFTCDDA 214

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score =  101 bits (254), Expect = 9e-25
 Identities = 43/192 (22%), Positives = 74/192 (38%), Gaps = 30/192 (15%)

Query: 393 LTNISDNA-FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
            T +     F+ L  LR +  ++N++  I        + + E+ +  N    ++   FKG
Sbjct: 44  FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG 103

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
           L  LK L +   + +T V   +F   L ++  L+L  N ++  +   A   L +L  LNL
Sbjct: 104 LESLKTLMLRS-NRITCVGNDSF-IGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNL 160

Query: 511 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLK 568
                                    NP  C C + WL E L ++   T    C  P  LK
Sbjct: 161 -----------------------LANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYFLK 197

Query: 569 YKSLISLSAEDL 580
              +  ++ +D 
Sbjct: 198 EIPIQDVAIQDF 209

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 90.1 bits (224), Expect = 9e-21
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 125 NRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           N  + ++    F+ L  LR +   +N++  +   +F     + E+ +  N    +    F
Sbjct: 42  NEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMF 101

Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
            GL  L  L LR   +T + +++F GLS +R L L DN++ ++       L  L  L + 
Sbjct: 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161

Query: 244 QN 245
            N
Sbjct: 162 AN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 28/158 (17%), Positives = 50/158 (31%), Gaps = 36/158 (22%)

Query: 28  SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI--YLSLQHVDLSHTTW 80
            C     +     L+ IP H       L L+ N    +++         L+ ++ S+   
Sbjct: 10  RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI 69

Query: 81  LIIPIGGFEPQEKLVELQLNHN--KHFPQ-----------------QIVCSIISP----- 116
             I  G FE    + E+ L  N  ++                    +I C  +       
Sbjct: 70  TDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITC--VGNDSFIG 127

Query: 117 -RRVEIFG--QNRISRIDQACFEGLTALRILYLDDNQL 151
              V +     N+I+ +    F+ L +L  L L  N  
Sbjct: 128 LSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  119 bits (300), Expect = 5e-31
 Identities = 56/226 (24%), Positives = 90/226 (39%), Gaps = 51/226 (22%)

Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
           E+R+  N    +  GAF+   +L  +DL    ++ ++ +AF+GL  L SLVL  N++  +
Sbjct: 36  EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL 95

Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL 286
           P      L  L+ L +  N                          +  +R  AF D  NL
Sbjct: 96  PKSLFEGLFSLQLLLLNAN-------------------------KINCLRVDAFQDLHNL 130

Query: 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 346
             L+L  N KL+TI +G    L  +  ++L                       A+NP  C
Sbjct: 131 NLLSLYDN-KLQTIAKGTFSPLRAIQTMHL-----------------------AQNPFIC 166

Query: 347 GCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
            C++ WL + L      TS   C SP  L  K +  + ++   C+ 
Sbjct: 167 DCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRCSA 212

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score =  108 bits (273), Expect = 3e-27
 Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 27/190 (14%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           +  I   AF     LR + L++N++  +       L  L  L +  N  + L    F+GL
Sbjct: 44  IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103

Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
             L+ L +  A+ +  +R  AF D  NL  L+L  N KL+ I +     L  +  ++L  
Sbjct: 104 FSLQLLLL-NANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHL-- 159

Query: 513 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYK 570
                                A+NP  C C++ WL + L      TS   C SP  L  K
Sbjct: 160 ---------------------AQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANK 198

Query: 571 SLISLSAEDL 580
            +  + ++  
Sbjct: 199 RIGQIKSKKF 208

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 97.4 bits (243), Expect = 3e-23
 Identities = 38/122 (31%), Positives = 54/122 (44%)

Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           QN I  I    F     LR + L +NQ+  +   +F  L  L  L +  N  T L    F
Sbjct: 41  QNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLF 100

Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
            GL  L  L L    +  +  +AF+ L  L  L L DN+LQ+I     S L  ++ + + 
Sbjct: 101 EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLA 160

Query: 244 QN 245
           QN
Sbjct: 161 QN 162

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  125 bits (316), Expect = 8e-31
 Identities = 69/404 (17%), Positives = 123/404 (30%), Gaps = 23/404 (5%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
              + L L  N +  +  P   +L  L  LR+  N   +L    F     L  LD+    
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
           L NIS      ++ LR L L+ N    +P  K+   LT+L  L +    F  L+      
Sbjct: 112 LQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 258 LSYLKRLEITGASNLTRVRKGAFAD-NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
           L     L    + ++      +    N  +  L  + N         ++  L +L   N+
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 317 KENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYK 376
           K N               R       P      +  +        T             +
Sbjct: 229 KLNDENCQRLMTFLSELTR------GPTLLNVTLQHI------ETTWKCSVKLFQFFWPR 276

Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
            +  L+  +L             +   L  L    + +           S    +    +
Sbjct: 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKML 336

Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE 496
             +    +   C    S    L  T  +  T       +    L+TL L +N  LK   +
Sbjct: 337 SISDTPFIHMVCPPSPSSFTFLNFTQ-NVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFK 394

Query: 497 --DALVGLPNLYHLNLKENAFTSFSESML-AWPE-LRTIDIAEN 536
                  + +L  L++  N+  S +     AW E +  ++++ N
Sbjct: 395 VALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  116 bits (293), Expect = 8e-28
 Identities = 100/569 (17%), Positives = 184/569 (32%), Gaps = 110/569 (19%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
             +    NL  +P    P  + L LS N I            L+  D+S  +        
Sbjct: 35  MVDYSNRNLTHVPKDLPPRTKALSLSQNSIS----------ELRMPDISFLS-------- 76

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
                +L  L+L+HN                       RI  +D   F     L  L + 
Sbjct: 77  -----ELRVLRLSHN-----------------------RIRSLDFHVFLFNQDLEYLDVS 108

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA-FNGLGRLSALDLRGAGLTNISDNA 206
            N+L+++       +  L  L +  N F  L     F  L +L+ L L  A    +    
Sbjct: 109 HNRLQNIS---CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165

Query: 207 FRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
              L      L L    ++   T+ L        L +  +  S+        ++ L  L+
Sbjct: 166 VAHLHLSCILLDLVSYHIKGGETESLQIPN-TTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 266 ITG-----------ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
           ++             + L+ + +G    N+ L+ +       +K  +         + +L
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ---FFWPRPVEYL 281

Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
           N+     T          +      +E           L+ +++    + VF        
Sbjct: 282 NIYNLTITER-------IDREEFTYSETA---------LKSLMIEHVKNQVF-LFSKEAL 324

Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
           Y     ++ + L    +    I        S    L  T N       +  S L RL+ L
Sbjct: 325 YSVFAEMNIKMLS--ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTL 382

Query: 435 EIGQNGFSMLE--AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN---- 488
            + +NG       A   K +S L+ L+++  S  +       A   ++  L L+ N    
Sbjct: 383 ILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG 442

Query: 489 -------PKLKIIE---------EDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTI 531
                  PK+K+++            +  L  L  LN+  N   S  + +      L+ I
Sbjct: 443 SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502

Query: 532 DIAENPIECGCN-ILWLREMLVRRNTSAV 559
            + +NP +C C  I +L E  + +++  V
Sbjct: 503 WLHDNPWDCTCPGIRYLSEW-INKHSGVV 530

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  115 bits (291), Expect = 1e-29
 Identities = 45/198 (22%), Positives = 89/198 (44%), Gaps = 6/198 (3%)

Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRG 196
             + + L L +  LR++P+ +F  L  ++ + V ++V    L   +F  L +++ +++R 
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 197 A-GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIGQNGF-SMLEAG 253
              LT I  +A + L  L+ L + +  L+  P    +        LEI  N + + +   
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN-LY 312
            F+GL           +  T V+  AF +   L+ + LNKN  L  I++ A  G+ +   
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208

Query: 313 HLNLKENAFTSFSESMLA 330
            L++ + + T+     L 
Sbjct: 209 LLDVSQTSVTALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  114 bits (287), Expect = 6e-29
 Identities = 41/199 (20%), Positives = 71/199 (35%), Gaps = 8/199 (4%)

Query: 124 QNRISRIDQACFEGLTALRILYLDDN-QLRSVPTPSFIYLGMLAELRVGLN-VFTTLADG 181
           +  +  I    F  L  +  +Y+  +  L+ + + SF  L  +  + +      T +   
Sbjct: 40  ETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99

Query: 182 AFNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLTR-LE 238
           A   L  L  L +   GL    D            L +TDN  + SIP      L     
Sbjct: 100 ALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL 159

Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN-LETLTLNKNPKL 297
            L++  NGF+ ++   F G   L  + +     LT + K AF    +    L +++   +
Sbjct: 160 TLKLYNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SV 217

Query: 298 KTIEEGALVGLPNLYHLNL 316
             +    L  L  L   N 
Sbjct: 218 TALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  112 bits (283), Expect = 2e-28
 Identities = 47/246 (19%), Positives = 93/246 (37%), Gaps = 31/246 (12%)

Query: 26  DPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL-II 83
           +    +   ++  IPS   PS Q L L    ++T+ S A     ++  + +S    L  +
Sbjct: 13  EEDFRVTCKDIQRIPSLP-PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 84  PIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRI 143
               F    K+  +++ + ++                      ++ ID    + L  L+ 
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRN----------------------LTYIDPDALKELPLLKF 109

Query: 144 LYLDDNQLRSVPTPSFIY-LGMLAELRVGLNVF-TTLADGAFNGLGRLSA-LDLRGAGLT 200
           L + +  L+  P  + +Y   +   L +  N + T++   AF GL   +  L L   G T
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 201 NISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKL-TRLEELEIGQNGFSMLEAGCFKGL 258
           ++   AF G   L ++ L  N+ L  I       + +    L++ Q   + L +   + L
Sbjct: 170 SVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228

Query: 259 SYLKRL 264
             L   
Sbjct: 229 KELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  107 bits (269), Expect = 1e-26
 Identities = 40/252 (15%), Positives = 80/252 (31%), Gaps = 32/252 (12%)

Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
                  +T   +Q IP    S     + L++ +     + +  F  L  + R+ ++   
Sbjct: 11  HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
            L ++   +F +   +  + +     L  I+  AL  LP L  L +       F +    
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 331 W--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
           +       ++I +NP      +  +            F                   L  
Sbjct: 127 YSTDIFFILEITDNP-----YMTSIPV--------NAFQGLCNET----------LTLKL 163

Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKL-TRLEELEIGQNGFSMLEA 446
              G T++   AF G   L ++ L  N+ L  I       + +    L++ Q   + L +
Sbjct: 164 YNNGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222

Query: 447 GCFKGLSYLKRL 458
              + L  L   
Sbjct: 223 KGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score =  107 bits (268), Expect = 2e-26
 Identities = 51/295 (17%), Positives = 87/295 (29%), Gaps = 80/295 (27%)

Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG-AGLTNI 202
             +    ++ +P+           L++      T+   AF+ L  +S + +     L  +
Sbjct: 16  FRVTCKDIQRIPSLP----PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL 71

Query: 203 SDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
             ++F  LS +  + + + R L  I    L +L  L+ L I   G  M            
Sbjct: 72  ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTK------ 125

Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPN-LYHLNLKENA 320
                                      L +  NP + +I   A  GL N    L L  N 
Sbjct: 126 ------------------VYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
           FTS         +L  + + +N                                      
Sbjct: 168 FTSVQGYAFNGTKLDAVYLNKNK------------------------------------- 190

Query: 381 LSAEDLGCAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 434
                       LT I  +AF G+ SG   L ++   + ++P+K L  L  L   
Sbjct: 191 -----------YLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIAR 234

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 87.8 bits (218), Expect = 8e-20
 Identities = 46/252 (18%), Positives = 85/252 (33%), Gaps = 69/252 (27%)

Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN---------AFTSFSESMLAWPELR 335
           + +TL L +   L+TI   A   LPN+  + +  +         +F +         ++ 
Sbjct: 32  STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNL-------SKVT 83

Query: 336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN 395
            I+I                                                     LT 
Sbjct: 84  HIEIRNTRN------------------------------------------------LTY 95

Query: 396 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIGQNGF-SMLEAGCFKGLS 453
           I  +A + L  L+ L + +  L+  P    +        LEI  N + + +    F+GL 
Sbjct: 96  IDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC 155

Query: 454 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN-LYHLNLKE 512
                     +  T V+  AF +   L+ + LNKN  L +I++DA  G+ +    L++ +
Sbjct: 156 NETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

Query: 513 NAFTSFSESMLA 524
            + T+     L 
Sbjct: 215 TSVTALPSKGLE 226

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 31/177 (17%)

Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEA 446
                +  I           ++L L +  L++IP+   S L  +  + +  +     LE+
Sbjct: 18  VTCKDIQRIPS----LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES 73

Query: 447 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN------------------ 488
             F  LS +  +EI    NLT +   A  +   L+ L +                     
Sbjct: 74  HSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFF 133

Query: 489 -------PKLKIIEEDALVGLPN-LYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
                  P +  I  +A  GL N    L L  N FTS         +L  + + +N 
Sbjct: 134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 79.3 bits (196), Expect = 8e-17
 Identities = 24/135 (17%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
                  +T   +Q IP    S     + L++ +     + +  F  L  + R+ ++   
Sbjct: 11  HQEEDFRVTCKDIQRIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV 66

Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 524
            L ++   +F +   +  + +     L  I+ DAL  LP L  L +       F +    
Sbjct: 67  TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 525 W--PELRTIDIAENP 537
           +       ++I +NP
Sbjct: 127 YSTDIFFILEITDNP 141

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  117 bits (296), Expect = 3e-29
 Identities = 86/417 (20%), Positives = 154/417 (36%), Gaps = 82/417 (19%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
             I++I       L       L    +  V T                            
Sbjct: 10  APINQIFP--DADLAEGIRAVLQKASVTDVVT--------------------------QE 41

Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
            L  ++ L + G  + +I       L+ L  L L  N++  I    LS L +L  L IG 
Sbjct: 42  ELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGT 97

Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA 304
           N  + + A   + L+ L+ L +    N++ +     A+   + +L L  N  L  +    
Sbjct: 98  NKITDISA--LQNLTNLRELYLNE-DNISDIS--PLANLTKMYSLNLGANHNLSDLSP-- 150

Query: 305 LVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 363
           L  +  L +L + E+     +  + L   +L ++ +  N IE    +             
Sbjct: 151 LSNMTGLNYLTVTESKVKDVTPIANL--TDLYSLSLNYNQIEDISPL------------- 195

Query: 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK 423
                        SL SL           +T+I+      ++ L SL + +N++  +   
Sbjct: 196 ------------ASLTSL--HYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP- 238

Query: 424 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483
            L+ L++L  LEIG N  S + A   K L+ LK L +   + ++ +      +   L +L
Sbjct: 239 -LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGS-NQISDI--SVLNNLSQLNSL 292

Query: 484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 539
            LN N +L   + + + GL NL  L L +N  T     + L   ++ + D A   I+
Sbjct: 293 FLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL--SKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (276), Expect = 1e-26
 Identities = 68/403 (16%), Positives = 136/403 (33%), Gaps = 73/403 (18%)

Query: 37  DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVE 96
            + P        R VL    +  V        S+  + ++     +  I G E    L  
Sbjct: 14  QIFPDADLAEGIRAVLQKASVTDV-VTQEELESITKLVVAGE--KVASIQGIEYLTNLEY 70

Query: 97  LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
           L LN N                       +I+ I       L  L  LY+  N++  +  
Sbjct: 71  LNLNGN-----------------------QITDISP--LSNLVKLTNLYIGTNKITDIS- 104

Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
            +   L  L EL +  +  + ++      L ++ +L+L      +        ++GL  L
Sbjct: 105 -ALQNLTNLRELYLNEDNISDIS--PLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL 160

Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
            +T+++++ +    ++ LT L  L +  N    +       L+ L        + +T + 
Sbjct: 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTA-YVNQITDIT 215

Query: 277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRT 336
               A+   L +L +  N K+  +    L  L  L  L +  N  +  + ++    +L+ 
Sbjct: 216 --PVANMTRLNSLKIGNN-KITDLS--PLANLSQLTWLEIGTNQISDIN-AVKDLTKLKM 269

Query: 337 IDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNI 396
           +++  N I                          + L   +L  L    L      L N 
Sbjct: 270 LNVGSNQIS-----------------------DISVLN--NLSQL--NSLFLNNNQLGNE 302

Query: 397 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
                 GL+ L +L L+ N +  I    L+ L++++  +    
Sbjct: 303 DMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQ 343

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  108 bits (273), Expect = 4e-26
 Identities = 76/377 (20%), Positives = 132/377 (35%), Gaps = 62/377 (16%)

Query: 92  EKLVELQLNHNKHFPQQIVCSIISPRRVE-----IFGQNRISRIDQACFEGLTALRILYL 146
            + +   L          V  +++   +E     +    +++ I     E LT L  L L
Sbjct: 22  AEGIRAVLQKAS------VTDVVTQEELESITKLVVAGEKVASIQG--IEYLTNLEYLNL 73

Query: 147 DDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA 206
           + NQ+  +       L  L  L +G N  T ++  A   L  L  L L    +++IS   
Sbjct: 74  NGNQITDI--SPLSNLVKLTNLYIGTNKITDIS--ALQNLTNLRELYLNEDNISDIS--P 127

Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
              L+ + SL L  N   S     LS +T L  L + ++    +       L+ L  L +
Sbjct: 128 LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184

Query: 267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
              + +  +     A   +L   T   N ++  I    +  +  L  L +  N  T  S 
Sbjct: 185 -NYNQIEDI--SPLASLTSLHYFTAYVN-QITDIT--PVANMTRLNSLKIGNNKITDLSP 238

Query: 327 -SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
            + L   +L  ++I  N I                            +  K L  L  + 
Sbjct: 239 LANL--SQLTWLEIGTNQIS-----------------------DINAV--KDLTKL--KM 269

Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
           L      +++IS      LS L SL L +N+L +   + +  LT L  L + QN  + + 
Sbjct: 270 LNVGSNQISDIS--VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 446 AGCFKGLSYLKRLEITG 462
                 LS +   +   
Sbjct: 328 P--LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 86.4 bits (215), Expect = 1e-18
 Identities = 47/274 (17%), Positives = 105/274 (38%), Gaps = 31/274 (11%)

Query: 30  NLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
            +    +  I +  N  +++ L L+ + I  + S +     +  ++L      +  +   
Sbjct: 94  YIGTNKITDISALQNLTNLRELYLNEDNISDI-SPLANLTKMYSLNLGANH-NLSDLSPL 151

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISP-------RRVEIFGQNRISRIDQACFEGLTAL 141
                L  L +  +K          ++P         + +   N+I  I       LT+L
Sbjct: 152 SNMTGLNYLTVTESK-------VKDVTPIANLTDLYSLSL-NYNQIEDISP--LASLTSL 201

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
                  NQ+  +       +  L  L++G N  T L+      L +L+ L++    +++
Sbjct: 202 HYFTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD 257

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL 261
           I+  A + L+ L+ L +  N++  I    L+ L++L  L +  N     +     GL+ L
Sbjct: 258 IN--AVKDLTKLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313

Query: 262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
             L ++  +++T +R    A    +++       
Sbjct: 314 TTLFLSQ-NHITDIR--PLASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.4 bits (163), Expect = 6e-12
 Identities = 56/329 (17%), Positives = 101/329 (30%), Gaps = 96/329 (29%)

Query: 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 271
           G  +L      +  I     + L       + +                     +T    
Sbjct: 1   GAATLATLPAPINQIFP--DADLAEGIRAVLQKA-------------------SVTDVVT 39

Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLA 330
              +         ++  L +    K+ +I+   +  L NL +LNL  N  T  S  S L 
Sbjct: 40  QEELE--------SITKLVVAGE-KVASIQ--GIEYLTNLEYLNLNGNQITDISPLSNL- 87

Query: 331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
             +L  + I  N I                          + L+  +L +L   +L    
Sbjct: 88  -VKLTNLYIGTNKIT-----------------------DISALQ--NLTNL--RELYLNE 119

Query: 391 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 450
             +++IS      L+ + SL L  N   S     LS +T L  L + ++    +      
Sbjct: 120 DNISDIS--PLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IA 174

Query: 451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
            L+                         +L +L+LN N   +I +   L  L +L++   
Sbjct: 175 NLT-------------------------DLYSLSLNYN---QIEDISPLASLTSLHYFTA 206

Query: 511 KENAFTSFSESMLAWPELRTIDIAENPIE 539
             N  T  +  +     L ++ I  N I 
Sbjct: 207 YVNQITDIT-PVANMTRLNSLKIGNNKIT 234

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  118 bits (298), Expect = 8e-29
 Identities = 97/513 (18%), Positives = 180/513 (35%), Gaps = 74/513 (14%)

Query: 31  LQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
            Q+  ++ I + +      + VL    +    S   +   +  +        I  I G E
Sbjct: 9   TQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD-QVTTLQADRL--GIKSIDGVE 65

Query: 90  PQEKLVELQLNHNKHFPQQIVCSIISPRRVE-----IFGQNRISRIDQACFEGLTALRIL 144
               L ++  ++N+      +  I   + +      +   N+I+ I       LT L  L
Sbjct: 66  YLNNLTQINFSNNQ------LTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD 204
            L +NQ+  +       L  L  L +  N  + +   A +GL  L  L         ++D
Sbjct: 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG----NQVTD 169

Query: 205 -NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
                 L+ L  L ++ N++  I    L+KLT LE L    N  S +       L+ L  
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDE 225

Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS 323
           L + G + L  +  G  A   NL  L L  N ++  +    L GL  L  L L  N  ++
Sbjct: 226 LSLNG-NQLKDI--GTLASLTNLTDLDLANN-QISNLA--PLSGLTKLTELKLGANQISN 279

Query: 324 FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSA 383
            S  +     L  +++ EN +E                         +P+   +L +L  
Sbjct: 280 IS-PLAGLTALTNLELNENQLE-----------------------DISPI--SNLKNL-- 311

Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
             L      +++IS      L+ L+ L   +N++  + +  L+ LT +  L  G N  S 
Sbjct: 312 TYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISD 367

Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 503
           L       L+ + +L +             +  N+++     N    L       +    
Sbjct: 368 LTP--LANLTRITQLGLND--QAWTNAPVNYKANVSIPNTVKNVTGALIAPAT--ISDGG 421

Query: 504 NLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 536
           +    ++  N  +  +E    + +  TI     
Sbjct: 422 SYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTT 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (281), Expect = 2e-26
 Identities = 83/435 (19%), Positives = 157/435 (36%), Gaps = 78/435 (17%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
             I++I       L       L    +      S   L  +  L+       ++      
Sbjct: 12  TPINQIFT--DTALAEKMKTVLGKTNVTDT--VSQTDLDQVTTLQADRLGIKSID--GVE 65

Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
            L  L+ ++     LT+I+    + L+ L  +++ +N++  I    L+ LT L  L +  
Sbjct: 66  YLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121

Query: 245 NGFSMLEAGCFKGLSYLKRL--------EITGASNLTRVRK----------GAFADNLNL 286
           N  + ++    K L+ L RL        +I+  S LT +++             A+   L
Sbjct: 122 NQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTL 179

Query: 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 345
           E L ++ N K+  I    L  L NL  L    N  +  +   +L    L  + +  N ++
Sbjct: 180 ERLDISSN-KVSDIS--VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLK 234

Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS 405
                                      L   SL +L   DL  A   ++N++     GL+
Sbjct: 235 -----------------------DIGTL--ASLTNL--TDLDLANNQISNLAP--LSGLT 265

Query: 406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 465
            L  L L  N++ +I    L+ LT L  LE+ +N    +       L  L  L +   +N
Sbjct: 266 KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF-NN 320

Query: 466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLA 524
           ++ +     +    L+ L    N   K+ +  +L  L N+  L+   N  +  +  + L 
Sbjct: 321 ISDI--SPVSSLTKLQRLFFYNN---KVSDVSSLANLTNINWLSAGHNQISDLTPLANL- 374

Query: 525 WPELRTIDIAENPIE 539
              +  + + +    
Sbjct: 375 -TRITQLGLNDQAWT 388

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  114 bits (287), Expect = 1e-28
 Identities = 60/237 (25%), Positives = 95/237 (40%), Gaps = 46/237 (19%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
           S +     L  IPS+     ++L L +N++ +                       +P   
Sbjct: 20  SVDCSSKKLTAIPSNIPADTKKLDLQSNKLSS-----------------------LPSKA 56

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
           F    KL  L LN NK                       +  +    F+ L  L  L++ 
Sbjct: 57  FHRLTKLRLLYLNDNK-----------------------LQTLPAGIFKELKNLETLWVT 93

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
           DN+L+++P   F  L  LAELR+  N   +L    F+ L +L+ L L    L ++    F
Sbjct: 94  DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
             L+ L+ L L +N+L+ +P     KLT L+ L++  N    +  G F  L  LK L
Sbjct: 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score =  101 bits (255), Expect = 2e-24
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 6/169 (3%)

Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
             L      L  +    F+ L  L +L +TDN+LQ++P     +L  L EL + +N    
Sbjct: 64  RLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS 123

Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGL 502
           L    F  L+ L  L +   + L  + KG F D L +L+ L L  N +LK + E A   L
Sbjct: 124 LPPRVFDSLTKLTYLSLGY-NELQSLPKGVF-DKLTSLKELRLYNN-QLKRVPEGAFDKL 180

Query: 503 PNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCN-ILWLRE 549
             L  L L  N      E       +L+ + + ENP +C CN I+++ +
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAK 229

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 99.7 bits (249), Expect = 1e-23
 Identities = 51/236 (21%), Positives = 89/236 (37%), Gaps = 59/236 (25%)

Query: 148 DNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205
             +L ++P+  P+        +L +  N  ++L   AF+ L +L  L L    L  +   
Sbjct: 25  SKKLTAIPSNIPAD-----TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
            F+ L  L +L +TDN+LQ++P     +L  L EL + +N    L    F  L+      
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT------ 133

Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
                               L  L+L  N +L+++ +G    L +L  L L  N      
Sbjct: 134 -------------------KLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173

Query: 326 ESMLA-------------------------WPELRTIDIAENPIECGCN-ILWLRE 355
           E                               +L+ + + ENP +C CN I+++ +
Sbjct: 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIYMAK 229

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 89.3 bits (222), Expect = 6e-20
 Identities = 58/248 (23%), Positives = 92/248 (37%), Gaps = 74/248 (29%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL+   L+++   AF  L+ LR L L DN+LQ++P     +L  LE L +  N    L 
Sbjct: 42  LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP 101

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
            G F  L                          NL  L L++N +LK++       L  L
Sbjct: 102 IGVFDQLV-------------------------NLAELRLDRN-QLKSLPPRVFDSLTKL 135

Query: 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371
            +L+L  N   S  +                                      VF     
Sbjct: 136 TYLSLGYNELQSLPKG-------------------------------------VF----- 153

Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
                 L SL  ++L      L  + + AF  L+ L++L L +N+L+ +P      L +L
Sbjct: 154 ----DKLTSL--KELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 432 EELEIGQN 439
           + L++ +N
Sbjct: 208 KMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 51/182 (28%), Positives = 88/182 (48%), Gaps = 25/182 (13%)

Query: 30  NLQEANLDVIPS---HSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWLIIPI 85
           +LQ   L  +PS   H    ++ L L+ N+++T+ + I   L  L+ + ++      +PI
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI 102

Query: 86  GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF-----------GQNRISRIDQAC 134
           G F+    L EL+L+ N     Q+    + PR   +F           G N +  + +  
Sbjct: 103 GVFDQLVNLAELRLDRN-----QL--KSLPPR---VFDSLTKLTYLSLGYNELQSLPKGV 152

Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
           F+ LT+L+ L L +NQL+ VP  +F  L  L  L++  N    + +GAF+ L +L  L L
Sbjct: 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

Query: 195 RG 196
           + 
Sbjct: 213 QE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 43/131 (32%), Positives = 62/131 (47%), Gaps = 7/131 (5%)

Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
           C+   LT I  N     +  + L L  N+L S+P+K   +LT+L  L +  N    L AG
Sbjct: 23  CSSKKLTAIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79

Query: 448 CFKGLSYLKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY 506
            FK L  L+ L +T   N L  +  G F   +NL  L L++N +LK +       L  L 
Sbjct: 80  IFKELKNLETLWVT--DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLT 136

Query: 507 HLNLKENAFTS 517
           +L+L  N   S
Sbjct: 137 YLSLGYNELQS 147

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (282), Expect = 3e-26
 Identities = 73/551 (13%), Positives = 172/551 (31%), Gaps = 89/551 (16%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNR-IKTVDSAIPIYLSLQHVDLSHTTWLIIP-- 84
             + Q+  +D  P      + +  ++++   K++  +  I L    +         +   
Sbjct: 142 RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA 201

Query: 85  IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL 144
           +       KL +  + ++  F  + +C        E     +  + +   ++ L  L  +
Sbjct: 202 VMRLT---KLRQFYMGNSP-FVAENICEAWENENSEY---AQQYKTEDLKWDNLKDLTDV 254

Query: 145 YLDD-NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG--------LGRLSALDLR 195
            + +   L  +P      L  +  + V  N   +      +           ++  + + 
Sbjct: 255 EVYNCPNLTKLP-TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313

Query: 196 GAGLTNIS-DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
              L     + + + +  L  L    N+L+           +L  L +  N  + + A  
Sbjct: 314 YNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPANF 372

Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLP---- 309
                 ++ L     + L  +     A ++  +  +  + N ++ +++      L     
Sbjct: 373 CGFTEQVENLSFAH-NKLKYIPNIFDAKSVSVMSAIDFSYN-EIGSVDGKNFDPLDPTPF 430

Query: 310 ---NLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
              N+  +NL  N  + F + + +    L +I++  N                       
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGN----------------------- 467

Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK-Q 424
                       L  +    L           +  F+    L S+ L  N+L  +    +
Sbjct: 468 -----------MLTEIPKNSLKD--------ENENFKNTYLLTSIDLRFNKLTKLSDDFR 508

Query: 425 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK-----GAFADNLN 479
            + L  L  +++  N FS          S LK   I    +    R             +
Sbjct: 509 ATTLPYLVGIDLSYNSFSKFPTQPLN-SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567

Query: 480 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-WPELRTIDIAENPI 538
           L  L +  N  ++ + E      PN+  L++K+N   S   S +  + E     +  +  
Sbjct: 568 LTQLQIGSN-DIRKVNEKIT---PNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623

Query: 539 E--CGCNILWL 547
           +   GC+ L +
Sbjct: 624 QDIRGCDALDI 634

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  111 bits (279), Expect = 6e-26
 Identities = 76/538 (14%), Positives = 156/538 (28%), Gaps = 77/538 (14%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
             +       P   + ++        R+    + +         DL        P     
Sbjct: 116 GEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSI 175

Query: 90  PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDN 149
            +   + L+                          N I+ + +A    LT LR  Y+ ++
Sbjct: 176 KKSSRITLKDTQIGQLS------------------NNITFVSKA-VMRLTKLRQFYMGNS 216

Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
              +               +          D  ++ L  L+ +++             + 
Sbjct: 217 PFVAENICEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKA 271

Query: 210 LSGLRSLVLTDNRLQSIPT--------KQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSY 260
           L  ++ + +  NR  S                  +++ + IG N           + +  
Sbjct: 272 LPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331

Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
           L  LE    + L      AF   + L +L L  N ++  I          + +L+   N 
Sbjct: 332 LGMLECLY-NQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK 388

Query: 321 FTSFSESMLAW--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
                    A     +  ID + N I    +      +             P P K  ++
Sbjct: 389 LKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPL------------DPTPFKGINV 435

Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-------KQLSKLTRL 431
            S+   +L  +   ++      F   S L S+ L  N L  IP        +       L
Sbjct: 436 SSI---NL--SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 432 EELEIGQNGFSML-EAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKN 488
             +++  N  + L +      L YL  +++  + N  ++        N   L+   +   
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDL--SYNSFSKFPTQPL--NSSTLKGFGIRNQ 546

Query: 489 PKL---KIIEE--DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG 541
                 + + E  + +   P+L  L +  N     +E +   P +  +DI +NP    
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI 602

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  110 bits (278), Expect = 9e-26
 Identities = 78/521 (14%), Positives = 154/521 (29%), Gaps = 90/521 (17%)

Query: 45  PSIQRLVLSTNRIK-----TVDSAIPIYLSLQHVDLS--HTTWLIIPIGGFEPQEKLVEL 97
             ++ L L ++  K          I   +S +       H     +     E    L++ 
Sbjct: 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKD 164

Query: 98  QLNHNKHFPQQIVCSIISPRRVEIFGQ-NRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
            +N +         S I+ +  +I    N I+ + +A    LT LR  Y+ ++   +   
Sbjct: 165 CINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKA-VMRLTKLRQFYMGNSPFVAENI 223

Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
                       +          D  ++ L  L+ +++             + L  ++ +
Sbjct: 224 CEAWENENSEYAQ-----QYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 217 VLTDNRLQSIPT--------KQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEIT 267
            +  NR  S                  +++ + IG N           + +  L  LE  
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 268 GASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSES 327
             + L      AF   + L +L L  N ++  I          + +L+   N        
Sbjct: 339 Y-NQLEGKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 328 MLAW--PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
             A     +  ID + N I                                         
Sbjct: 396 FDAKSVSVMSAIDFSYNEIG---------------------------------------- 415

Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
               G     +    F+G++ + S+ L++N++   P +  S  + L  + +  N  + + 
Sbjct: 416 -SVDGKNFDPLDPTPFKGIN-VSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIP 473

Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL-KIIEEDALVGLPN 504
               K  +           N              L ++ L  N KL K+ ++     LP 
Sbjct: 474 KNSLKDEN----ENF---KNTY-----------LLTSIDLRFN-KLTKLSDDFRATTLPY 514

Query: 505 LYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 545
           L  ++L  N+F+ F    L    L+   I       G   L
Sbjct: 515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 3e-22
 Identities = 61/413 (14%), Positives = 116/413 (28%), Gaps = 79/413 (19%)

Query: 69  SLQHVDLSH---TTWLIIPIGGFEPQE-----KLVELQLNHNKHFPQQIVCSIISPRRVE 120
            +Q ++++     +   +        +     K+  + + +N      +    +      
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-----NLKTFPVET---- 324

Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
                          + +  L +L    NQL     P+F     LA L +  N  T +  
Sbjct: 325 -------------SLQKMKKLGMLECLYNQLEGKL-PAFGSEIKLASLNLAYNQITEIPA 370

Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAF-RGLSGLRSLVLTDNRLQSIPTKQLS------- 232
                  ++  L      L  I +    + +S + ++  + N + S+  K          
Sbjct: 371 NFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPF 430

Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL-----EITG-ASNLTRVRKGAFADNLNL 286
           K   +  + +  N  S      F   S L  +      +T    N  +     F +   L
Sbjct: 431 KGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL 490

Query: 287 ETLTLNKNPKLKTI-EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
            ++ L  N KL  + ++     LP L  ++L  N+F+ F    L    L+   I      
Sbjct: 491 TSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549

Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG-- 403
            G   L        R         P      SL  L              I  N  R   
Sbjct: 550 QGNRTL--------REWPEGITLCP------SLTQL-------------QIGSNDIRKVN 582

Query: 404 ---LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
                 +  L + DN   SI    +          +  +    +       + 
Sbjct: 583 EKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 60/374 (16%), Positives = 115/374 (30%), Gaps = 52/374 (13%)

Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLE 238
            N  GR++ L L G G +    +A   L+ L  L L  +  +        K +S     E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
           + +  +  +          + Y  R +                   +L    +N +P+ K
Sbjct: 137 QKQKMRMHYQKTF------VDYDPREDF-----------------SDLIKDCINSDPQQK 173

Query: 299 TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI--ECGCNILWLREM 356
           +I++           +    N  T  S++++   +LR   +  +P   E  C        
Sbjct: 174 SIKKS-SRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS 232

Query: 357 LVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNR 416
              +            LK+ +L  L   D+               + L  ++ + +  NR
Sbjct: 233 EYAQQYKTE------DLKWDNLKDL--TDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284

Query: 417 LQSIPT--------KQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEITGASNLT 467
             S                  +++ + IG N           + +  L  LE    + L 
Sbjct: 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY-NQLE 343

Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW-- 525
                AF   + L +L L  N ++  I  +       + +L+   N          A   
Sbjct: 344 GKLP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSV 401

Query: 526 PELRTIDIAENPIE 539
             +  ID + N I 
Sbjct: 402 SVMSAIDFSYNEIG 415

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 32/245 (13%), Positives = 67/245 (27%), Gaps = 41/245 (16%)

Query: 45  PSIQRLVLSTNRIKTVD----SAIPIYL----SLQHVDLSH---TTWLIIPIGGFEPQEK 93
             +  +  S N I +VD      +        ++  ++LS+   +     P   F     
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK---FPKELFSTGSP 458

Query: 94  LVELQLNHNK--HFPQQIVCSIISPRRVEIFGQ-----------NRISRI-DQACFEGLT 139
           L  + L  N     P+  +         E F             N+++++ D      L 
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDEN-----ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLP 513

Query: 140 ALRILYLDDNQLRSVPT-----PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
            L  + L  N     PT      +    G+  +     N               L+ L +
Sbjct: 514 YLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQI 573

Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
               +  +++        +  L + DN   SI    +          +  +    +    
Sbjct: 574 GSNDIRKVNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCD 630

Query: 255 FKGLS 259
              + 
Sbjct: 631 ALDIK 635

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score =  100 bits (250), Expect = 6e-24
 Identities = 48/152 (31%), Positives = 73/152 (48%), Gaps = 1/152 (0%)

Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           L L    L ++   +F  L  L  L +  N   TL+ G F+ L  L  L L    L ++ 
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
              F  L+ L  L L  N+L+S+P+    +LT+L+EL +  N    + AG F  L+ L+ 
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159

Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
           L ++  + L  V  GAF     L+T+TL  N 
Sbjct: 160 LSLST-NQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 98.6 bits (246), Expect = 2e-23
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 31/202 (15%)

Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
           +L +      TL+D  F GL +L+ L+L    L  +S   F  L+ L +L L +N+L S+
Sbjct: 39  KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98

Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL- 284
           P      LT+L++L +G N    L +G F  L+ LK L +   +N L  +  GAF D L 
Sbjct: 99  PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL--NTNQLQSIPAGAF-DKLT 155

Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
           NL+TL+L+ N +L+++  GA   L  L  + L                         N  
Sbjct: 156 NLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLF-----------------------GNQF 191

Query: 345 ECGCN-ILWLREMLVRRNTSAV 365
           +C    IL+L + + R N++ V
Sbjct: 192 DCSRCEILYLSQWI-RENSNKV 212

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 95.1 bits (237), Expect = 4e-22
 Identities = 68/224 (30%), Positives = 92/224 (41%), Gaps = 31/224 (13%)

Query: 346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL------ISLSAEDLGCAGAGLTNISDN 399
           C CN               V C        KSL      I    E L     GL  +SD 
Sbjct: 10  CTCN----------EGKKEVDCQG------KSLDSVPSGIPADTEKLDLQSTGLATLSDA 53

Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
            FRGL+ L  L L  N+LQ++       LT L  L +  N  + L  G F  L+ L +L 
Sbjct: 54  TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLY 113

Query: 460 ITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS 517
           +    N L  +  G F D L  L+ L LN N +L+ I   A   L NL  L+L  N   S
Sbjct: 114 L--GGNQLKSLPSGVF-DRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQS 169

Query: 518 FSESMLA-WPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 559
                     +L+TI +  N  +C    IL+L + + R N++ V
Sbjct: 170 VPHGAFDRLGKLQTITLFGNQFDCSRCEILYLSQWI-RENSNKV 212

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 81.7 bits (202), Expect = 1e-17
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 25/190 (13%)

Query: 56  RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIIS 115
            + +V S IP     + +DL  T    +    F    KL  L L++N+            
Sbjct: 25  SLDSVPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ------------ 70

Query: 116 PRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF 175
                      +  +    F+ LT L  L L +NQL S+P   F +L  L +L +G N  
Sbjct: 71  -----------LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQL 119

Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
            +L  G F+ L +L  L L    L +I   AF  L+ L++L L+ N+LQS+P     +L 
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179

Query: 236 RLEELEIGQN 245
           +L+ + +  N
Sbjct: 180 KLQTITLFGN 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (256), Expect = 2e-23
 Identities = 71/438 (16%), Positives = 137/438 (31%), Gaps = 78/438 (17%)

Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
              +   D    E L  L  L   ++ +  +       L  L +L    N  TTL     
Sbjct: 27  AFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---L 81

Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
           +    L+ L      LTN+       L+ L  L    N+L  +    +S+   L  L   
Sbjct: 82  SQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCA 135

Query: 244 QNGFSMLEAGCFKGLSYL-----KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
           +N  + ++      L+ L     K++     +  T++     + N  +  L +++N  L 
Sbjct: 136 RNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITELDVSQNKLLN 194

Query: 299 T-------IEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC--GCN 349
                   I +  L     L  L+   N  T    + L   +L   D + NP+       
Sbjct: 195 RLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPL--TQLTYFDCSVNPLTELDVST 252

Query: 350 ILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGL 407
           +  L  +   +         ++        LI   AE       G   I +      + L
Sbjct: 253 LSKLTTLHCIQTDLLEIDLTHNT------QLIYFQAE-------GCRKIKELDVTHNTQL 299

Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
             L      +  +    LS+  +L  L +     + L+                      
Sbjct: 300 YLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD---------------------- 334

Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPE 527
                  + N  L++L+        I +  ++  +P L +    E    +  +  L    
Sbjct: 335 ------VSHNTKLKSLSCVNA---HIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNS 385

Query: 528 LRTIDIAENPIECGCNIL 545
           L TI ++ + ++   N +
Sbjct: 386 L-TIAVSPDLLDQFGNPM 402

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  100 bits (250), Expect = 1e-22
 Identities = 66/362 (18%), Positives = 118/362 (32%), Gaps = 40/362 (11%)

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
            ++       +      +   L+ L SL   ++ +  +    + KLT L +L    N  +
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNIT 77

Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
            L+       + L  L     + LT +          L  L  + N KL  ++       
Sbjct: 78  TLD---LSQNTNLTYLACDS-NKLTNL---DVTPLTKLTYLNCDTN-KLTKLDVS---QN 126

Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
           P L +LN   N  T    S     +L  +D   N      ++    + L   + S    N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHN--TQLTELDCHLNKKITKLDVTPQTQ-LTTLDCSF---N 180

Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
               L       L    L C    +T +          L  L  + N+L  I    ++ L
Sbjct: 181 KITELDVSQNKLL--NRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID---VTPL 232

Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLK----RLEITGASNLTRVRKGAFADNLNLETLT 484
           T+L   +   N  + L+      L+ L      L     ++ T++          ++ L 
Sbjct: 233 TQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 485 LNKNPKLKI-------IEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
           +  N +L +       I E  L   P L +L L     T    S     +L+++      
Sbjct: 293 VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHN--TKLKSLSCVNAH 350

Query: 538 IE 539
           I+
Sbjct: 351 IQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 78.6 bits (194), Expect = 1e-15
 Identities = 50/340 (14%), Positives = 97/340 (28%), Gaps = 67/340 (19%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
           N     L  +    NP +  L  + N +  +D  +     L  +D        I      
Sbjct: 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNK--KITKLDVT 167

Query: 90  PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTALRILYLD 147
           PQ +L  L  + NK         +   + +       N I+++D         L  L   
Sbjct: 168 PQTQLTTLDCSFNKI----TELDVSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCS 220

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA---------------- 191
            N+L  +       L  L      +N  T L     + L  L                  
Sbjct: 221 SNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           +  +  G   I +      + L  L      +  +    LS+  +L  L +     + L+
Sbjct: 278 IYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD 334

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL 311
                                        + N  L++L+      ++      +  +P L
Sbjct: 335 ----------------------------VSHNTKLKSLSCVNA-HIQDFSS--VGKIPAL 363

Query: 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNIL 351
            +    E    +  +  L    L TI ++ + ++   N +
Sbjct: 364 NNNFEAEGQTITMPKETLTNNSL-TIAVSPDLLDQFGNPM 402

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 49/241 (20%)

Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
              L ++  +  +++ ++SV      YL  +  L +G N    +   A   L  L+ L L
Sbjct: 37  QNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92

Query: 195 RGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 254
            G  L ++ +  F  L+ L+ LVL +N+LQS+P     KLT L  L +  N    L  G 
Sbjct: 93  TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152

Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYH 313
           F                          D L NL  L L+ N +L+++ EG    L  L  
Sbjct: 153 F--------------------------DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKD 185

Query: 314 LNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSA 364
           L L +N         F   +        L+ I + +NP +C C  I +L E +  +++  
Sbjct: 186 LRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGV 237

Query: 365 V 365
           V
Sbjct: 238 V 238

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 90.8 bits (226), Expect = 1e-20
 Identities = 62/268 (23%), Positives = 97/268 (36%), Gaps = 57/268 (21%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
            +      + P  +     +  L    +    +   +  S+  +  +++    +   G +
Sbjct: 4   TVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQ--GIQ 60

Query: 90  PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDN 149
               +  L L  NK                       +  I  +  + LT L  L L  N
Sbjct: 61  YLPNVRYLALGGNK-----------------------LHDI--SALKELTNLTYLILTGN 95

Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
           QL+S+P                        +G F+ L  L  L L    L ++ D  F  
Sbjct: 96  QLQSLP------------------------NGVFDKLTNLKELVLVENQLQSLPDGVFDK 131

Query: 210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269
           L+ L  L L  N+LQS+P     KLT L EL++  N    L  G F  L+ LK L +   
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY-- 189

Query: 270 SN-LTRVRKGAFADNL-NLETLTLNKNP 295
            N L  V  G F D L +L+ + L+ NP
Sbjct: 190 QNQLKSVPDGVF-DRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 45/180 (25%), Positives = 70/180 (38%), Gaps = 32/180 (17%)

Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
             L    +      +   L  + ++    +   ++       L  +  L L G  L +IS
Sbjct: 24  ANLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDIS 79

Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
             A + L+ L  L+LT N+LQS+P     KLT L+EL + +N    L  G F  L+    
Sbjct: 80  --ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT---- 133

Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS 323
                                NL  L L  N +L+++ +G    L NL  L+L  N   S
Sbjct: 134 ---------------------NLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS 171

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 71.2 bits (175), Expect = 6e-14
 Identities = 54/171 (31%), Positives = 80/171 (46%), Gaps = 23/171 (13%)

Query: 400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 459
           A + L+ L  L+LT N+LQS+P     KLT L+EL + +N    L  G F  L+ L  L 
Sbjct: 80  ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLN 139

Query: 460 ITGASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN---- 513
           +    N L  + KG F D L NL  L L+ N +L+ + E     L  L  L L +N    
Sbjct: 140 LA--HNQLQSLPKGVF-DKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS 195

Query: 514 ----AFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 559
                F   +        L+ I + +NP +C C  I +L E +  +++  V
Sbjct: 196 VPDGVFDRLT-------SLQYIWLHDNPWDCTCPGIRYLSEWI-NKHSGVV 238

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 63/270 (23%), Positives = 90/270 (33%), Gaps = 64/270 (23%)

Query: 222 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
             Q  P           +  + +   +         L+ + ++     S++  V      
Sbjct: 9   IKQIFPD-DAF--AETIKANLKKKSVTDAVT--QNELNSIDQIIANN-SDIKSV--QGIQ 60

Query: 282 DNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE 341
              N+  L L  N KL  I   AL  L NL +L L  N   S                  
Sbjct: 61  YLPNVRYLALGGN-KLHDI--SALKELTNLTYLILTGNQLQSLP---------------- 101

Query: 342 NPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF 401
                                + VF +    LK           L      L ++ D  F
Sbjct: 102 ---------------------NGVF-DKLTNLKE----------LVLVENQLQSLPDGVF 129

Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
             L+ L  L L  N+LQS+P     KLT L EL++  N    L  G F  L+ LK L + 
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189

Query: 462 GASN-LTRVRKGAFADNL-NLETLTLNKNP 489
              N L  V  G F D L +L+ + L+ NP
Sbjct: 190 --QNQLKSVPDGVF-DRLTSLQYIWLHDNP 216

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 82/497 (16%), Positives = 162/497 (32%), Gaps = 78/497 (15%)

Query: 43  SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHN 102
           SN  +Q  +  ++ +  +        S      + + W      G   Q ++   +L   
Sbjct: 9   SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD- 67

Query: 103 KHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYL 162
                   C       +E+     +S +     E    L  L    N L  +P      L
Sbjct: 68  --------CLDRQAHELEL-NNLGLSSLP----ELPPHLESLVASCNSLTELP-ELPQSL 113

Query: 163 GMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR 222
             L      L   + L          L  L +    L  + +   +  S L+ + + +N 
Sbjct: 114 KSLLVDNNNLKALSDL-------PPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNS 164

Query: 223 LQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD 282
           L+ +P         LE +  G N    L     + L +L  +     ++L ++       
Sbjct: 165 LKKLP----DLPPSLEFIAAGNNQLEELPE--LQNLPFLTAIYADN-NSLKKL----PDL 213

Query: 283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAEN 342
            L+LE++    N  L+ + E  L  LP L  +    N   +  +     P L  +++ +N
Sbjct: 214 PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDLP---PSLEALNVRDN 267

Query: 343 PIECGCNILW-LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF 401
            +     +   L  + V  N  +     P  L Y          L  +   + ++ D   
Sbjct: 268 YLTDLPELPQSLTFLDVSENIFSGLSELPPNLYY----------LNASSNEIRSLCDL-- 315

Query: 402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 461
                L  L +++N+L  +P    +   RLE L    N  + +          LK+L + 
Sbjct: 316 --PPSLEELNVSNNKLIELP----ALPPRLERLIASFNHLAEVPEL----PQNLKQLHVE 365

Query: 462 GASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES 521
             + L            ++E L +N +   ++ E        NL  L+++ N    F + 
Sbjct: 366 Y-NPLREFPDIPE----SVEDLRMN-SHLAEVPEL-----PQNLKQLHVETNPLREFPDI 414

Query: 522 MLAWPELRTIDIAENPI 538
                 +  + +    +
Sbjct: 415 P---ESVEDLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 88.1 bits (219), Expect = 9e-19
 Identities = 67/421 (15%), Positives = 142/421 (33%), Gaps = 58/421 (13%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
            L    L  +P    P ++ LV S N +  +        SL   + +      +P     
Sbjct: 77  ELNNLGLSSLPE-LPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLP----- 130

Query: 90  PQEKLVELQLNHNK--HFPQQIVCSIISPRRVEI--FGQNRISRIDQACFEGLTALRILY 145
               L  L +++N+    P      + +   ++I     N + ++     +   +L  + 
Sbjct: 131 --PLLEYLGVSNNQLEKLP-----ELQNSSFLKIIDVDNNSLKKL----PDLPPSLEFIA 179

Query: 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN 205
             +NQL  +P      L  L  +    N    L     +    L ++      L  + + 
Sbjct: 180 AGNNQLEELP--ELQNLPFLTAIYADNNSLKKL----PDLPLSLESIVAGNNILEELPE- 232

Query: 206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE 265
             + L  L ++   +N L+++P         LE L +  N  + L     + L++L   E
Sbjct: 233 -LQNLPFLTTIYADNNLLKTLP----DLPPSLEALNVRDNYLTDLPE-LPQSLTFLDVSE 286

Query: 266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS 325
               S L+ +         NL  L  + N +++++ +      P+L  LN+  N      
Sbjct: 287 N-IFSGLSELPP-------NLYYLNASSN-EIRSLCDL----PPSLEELNVSNNKLIELP 333

Query: 326 ESMLAWPELRTIDIAENPIECGCNILW-LREMLVRRNTSAVFCNSPAPLKYKSLISLSAE 384
                 P L  +  + N +     +   L+++ V  N    F + P  ++    ++    
Sbjct: 334 ALP---PRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVE-DLRMNSHLA 389

Query: 385 DLGCAGAGLT--NISDNAFR----GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 438
           ++      L   ++  N  R        +  L +   R+            +LE+     
Sbjct: 390 EVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEH 449

Query: 439 N 439
           +
Sbjct: 450 H 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.6 bits (202), Expect = 1e-16
 Identities = 69/408 (16%), Positives = 128/408 (31%), Gaps = 71/408 (17%)

Query: 137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG 196
             T L+      + L  +P      +    E     + +   A             + R 
Sbjct: 9   SNTFLQEPLRHSSNLTEMP-VEAENVKSKTEYYNAWSEWERNA--------PPGNGEQRE 59

Query: 197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK 256
             ++ + D   R       L L +  L S+P         LE L    N  + L     +
Sbjct: 60  MAVSRLRDCLDR---QAHELELNNLGLSSLP----ELPPHLESLVASCNSLTELP----E 108

Query: 257 GLSYLKRLEITGAS--NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
               LK L +   +   L+ +          LE L ++ N +L+ + E  L     L  +
Sbjct: 109 LPQSLKSLLVDNNNLKALSDLPP-------LLEYLGVSNN-QLEKLPE--LQNSSFLKII 158

Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW---LREMLVRRNTSAVFCNSPA 371
           ++  N+     +     P L  I    N +E    +     L  +    N+     + P 
Sbjct: 159 DVDNNSLKKLPDLP---PSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL 215

Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
            L+           +      L  + +   + L  L ++   +N L+++P         L
Sbjct: 216 SLES----------IVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLP----DLPPSL 259

Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 491
           E L +  N  + L     + L++L   E    S L+ +         NL  L  + N   
Sbjct: 260 EALNVRDNYLTDLPE-LPQSLTFLDVSEN-IFSGLSELPP-------NLYYLNASSNEIR 310

Query: 492 KIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
            + +       P+L  LN+  N            P L  +  + N + 
Sbjct: 311 SLCDL-----PPSLEELNVSNNKLIELPALP---PRLERLIASFNHLA 350

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 90.6 bits (224), Expect = 5e-20
 Identities = 27/114 (23%), Positives = 41/114 (35%), Gaps = 1/114 (0%)

Query: 255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
             G   L  L I    +L  +          L  LT+ K+  L+ +   A    P L  L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRL 85

Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
           NL  NA  S S   +    L+ + ++ NP+ C C + WL+              
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 89.0 bits (220), Expect = 2e-19
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 1/114 (0%)

Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
             G   L  L I    +L  +          L  LT+ K+  L+ +  DA    P L  L
Sbjct: 27  LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRL 85

Query: 509 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 562
           NL  NA  S S   +    L+ + ++ NP+ C C + WL+              
Sbjct: 86  NLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 71.7 bits (175), Expect = 1e-13
 Identities = 27/137 (19%), Positives = 45/137 (32%), Gaps = 26/137 (18%)

Query: 111 CSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV 170
           C       +       +  +      G   L  LY+++                      
Sbjct: 5   CCPHGSSGLRCTRDGALDSLHH--LPGAENLTELYIENQ--------------------- 41

Query: 171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ 230
                  L      GLG L  L +  +GL  ++ +AF     L  L L+ N L+S+  K 
Sbjct: 42  --QHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT 99

Query: 231 LSKLTRLEELEIGQNGF 247
           +  L+ L+EL +  N  
Sbjct: 100 VQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 67.1 bits (163), Expect = 3e-12
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 182 AFNGLGRLSALDLRG-AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
              G   L+ L +     L ++     RGL  LR+L +  + L+ +         RL  L
Sbjct: 26  HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL 85

Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITG 268
            +  N    L     +GLS L+ L ++G
Sbjct: 86  NLSFNALESLSWKTVQGLS-LQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 7e-10
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           L ++     RGL  LR+L +  + L+ +         RL  L +  N    L     +GL
Sbjct: 44  LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL 103

Query: 453 SYLKRLEITG 462
           S L+ L ++G
Sbjct: 104 S-LQELVLSG 112

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 3e-19
 Identities = 79/398 (19%), Positives = 141/398 (35%), Gaps = 70/398 (17%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
           N+ E+ L  +P      I  LV+  N + ++ +  P    L+ +++S      +P     
Sbjct: 46  NVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLTSLP----V 98

Query: 90  PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDN 149
               L+EL +  N                        +  +        + L  L++  N
Sbjct: 99  LPPGLLELSIFSNPL--------------------THLPAL-------PSGLCKLWIFGN 131

Query: 150 QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG 209
           QL S+P         L EL V  N   +L          L  L      LT++       
Sbjct: 132 QLTSLPV----LPPGLQELSVSDNQLASLPAL----PSELCKLWAYNNQLTSLPML---- 179

Query: 210 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 269
            SGL+ L ++DN+L S+P    +  + L +L    N  + L A      S LK L ++G 
Sbjct: 180 PSGLQELSVSDNQLASLP----TLPSELYKLWAYNNRLTSLPAL----PSGLKELIVSG- 230

Query: 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
           + LT +          L+ L ++ N +L ++          L  L++  N  T   ES++
Sbjct: 231 NRLTSL----PVLPSELKELMVSGN-RLTSLPML----PSGLLSLSVYRNQLTRLPESLI 281

Query: 330 AWPELRTIDIAENPIE----CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
                 T+++  NP+          +                 + AP + ++L   +A+ 
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADW 341

Query: 386 LGCAGAGLTNISD--NAFRGLSGLRSLVLTDNRLQSIP 421
           L  A  G    +D  + F       +  L  +RL    
Sbjct: 342 LVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETE 379

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 75.7 bits (186), Expect = 1e-14
 Identities = 71/411 (17%), Positives = 128/411 (31%), Gaps = 80/411 (19%)

Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
                +L + ++ L ++P         +  L +  N  T+L          L  L++ G 
Sbjct: 39  NNGNAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLPA----LPPELRTLEVSGN 91

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK---------QLSKL----TRLEELEIGQ 244
            LT++      GL  L         L ++P+          QL+ L      L+EL +  
Sbjct: 92  QLTSLPVL-PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSD 150

Query: 245 NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA 304
           N  + L A      S L +L     + LT +          L+ L+++ N +L ++    
Sbjct: 151 NQLASLPA----LPSELCKLWAYN-NQLTSLPMLPS----GLQELSVSDN-QLASLPT-- 198

Query: 305 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC-GCNILWLREMLVRRNTS 363
                 LY L    N  TS          L+ + ++ N +         L+E++V  N  
Sbjct: 199 --LPSELYKLWAYNNRLTSLPALP---SGLKELIVSGNRLTSLPVLPSELKELMVSGN-- 251

Query: 364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTK 423
                         L SL                       SGL SL +  N+L  +P +
Sbjct: 252 -------------RLTSLPML-------------------PSGLLSLSVYRNQLTRLP-E 278

Query: 424 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483
            L  L+    + +  N  S       + ++         +  + R      +       L
Sbjct: 279 SLIHLSSETTVNLEGNPLSERTLQALREITSAPGY----SGPIIRFDMAGASAPRETRAL 334

Query: 484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENA--FTSFSESMLAWPELRTID 532
            L     L    E         +    ++NA  F+ F + +          
Sbjct: 335 HLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDA 385

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 75/396 (18%), Positives = 131/396 (33%), Gaps = 99/396 (25%)

Query: 189 LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS 248
            + L++  +GLT + D      + + +LV+ DN L S+P    +    L  LE+  N  +
Sbjct: 42  NAVLNVGESGLTTLPDCLP---AHITTLVIPDNNLTSLP----ALPPELRTLEVSGNQLT 94

Query: 249 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL 308
            L      GL  L                             L   P L           
Sbjct: 95  SLPVL-PPGLLELSIFS-----------------------NPLTHLPAL----------P 120

Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
             L  L +  N  TS        P L+ + +++N +                        
Sbjct: 121 SGLCKLWIFGNQLTSLPVLP---PGLQELSVSDNQLAS-------------------LPA 158

Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
            P+ L            L      LT++        SGL+ L ++DN+L S+P    +  
Sbjct: 159 LPSELCK----------LWAYNNQLTSLPML----PSGLQELSVSDNQLASLP----TLP 200

Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
           + L +L    N  + L A      S LK L ++G + LT +          L+ L ++ N
Sbjct: 201 SELYKLWAYNNRLTSLPAL----PSGLKELIVSG-NRLTSL----PVLPSELKELMVSGN 251

Query: 489 PKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE----CGCNI 544
            +L  +          L  L++  N  T   ES++      T+++  NP+          
Sbjct: 252 -RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQALRE 306

Query: 545 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDL 580
           +                 + AP + ++L   +A+ L
Sbjct: 307 ITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 84.3 bits (209), Expect = 5e-19
 Identities = 44/181 (24%), Positives = 78/181 (43%), Gaps = 30/181 (16%)

Query: 214 RSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
             L+L DN L  I +  L  +L  L +LE+ +N  + +E   F+G S+++ L++   + +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKI 90

Query: 273 TRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW 331
             +    F   L  L+TL L  N ++  +  G+   L +L  LNL               
Sbjct: 91  KEISNKMF-LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNL--------------- 133

Query: 332 PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
                   A NP  C C++ W  E L ++  N  A  C +P+ ++   +  L   +  C+
Sbjct: 134 --------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185

Query: 390 G 390
            
Sbjct: 186 S 186

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 73.9 bits (182), Expect = 2e-15
 Identities = 42/176 (23%), Positives = 75/176 (42%), Gaps = 30/176 (17%)

Query: 408 RSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 466
             L+L DN L  I +  L  +L  L +LE+ +N  + +E   F+G S+++ L++   + +
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE-NKI 90

Query: 467 TRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAW 525
             +    F   L  L+TL L  N ++  +   +   L +L  LNL               
Sbjct: 91  KEISNKMF-LGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSLNL--------------- 133

Query: 526 PELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAED 579
                   A NP  C C++ W  E L ++  N  A  C +P+ ++   +  L   +
Sbjct: 134 --------ASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSE 181

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 63.5 bits (155), Expect = 9e-12
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)

Query: 124 QNRISRID-QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
            N + RI     F  L  L  L L  NQL  +   +F     + EL++G N    +++  
Sbjct: 38  DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKM 97

Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
           F GL +L  L+L    ++ +   +F  L+ L SL L  N
Sbjct: 98  FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 33/172 (19%), Positives = 59/172 (34%), Gaps = 50/172 (29%)

Query: 28  SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
            C     +     L  IP         L+L+ N +                        I
Sbjct: 7   HCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGR----------------------I 44

Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
              G F     LV+L+L  N+                       ++ I+   FEG + ++
Sbjct: 45  SSDGLFGRLPHLVKLELKRNQ-----------------------LTGIEPNAFEGASHIQ 81

Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
            L L +N+++ +    F+ L  L  L +  N  + +  G+F  L  L++L+L
Sbjct: 82  ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 7e-18
 Identities = 103/576 (17%), Positives = 182/576 (31%), Gaps = 157/576 (27%)

Query: 43  SNPSIQRLVLSTNRIKTVDSAIPIYL----SLQHVDLSHT--TWLIIPIGGFEPQEKLVE 96
            +  +  + LS+  +    SA+   L     L+ + LS++     +           L  
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSA---SLTS 104

Query: 97  LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLR-SVP 155
           L L+ N      +   +       +                 + L+ L +  N L     
Sbjct: 105 LDLSRN-----SLSGPV--TTLTSLGS--------------CSGLKFLNVSSNTLDFPGK 143

Query: 156 TPSFIYLGMLAELRVGLNVFT---TLADGAFNGLGRLSALDLRGAGLT------------ 200
               + L  L  L +  N  +    +     +G G L  L + G  ++            
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLE 203

Query: 201 --NISDNAFRG-------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSML 250
             ++S N F          S L+ L ++ N+L      + +S  T L+ L I  N F   
Sbjct: 204 FLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNISSNQFV-- 260

Query: 251 EAGCFKGLSYLKRLEITG---ASNLTRVRKGAFADNLNLETLTLNKNPKLK-TIEEGALV 306
                            G      L            +L+ L+L +N K    I +    
Sbjct: 261 -----------------GPIPPLPLK-----------SLQYLSLAEN-KFTGEIPDFLSG 291

Query: 307 GLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN------PIECGCNILWLREMLVR 359
               L  L+L  N F  +      +   L ++ ++ N      P++    +  L+ + + 
Sbjct: 292 ACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS 351

Query: 360 RNT-----SAVFCNSPAPLKYKSLIS------LSAEDLGCAGAGLT--NISDNAFRG--- 403
            N           N  A L    L S      +           L    + +N F G   
Sbjct: 352 FNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411

Query: 404 -----LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSMLEAG----CFKGLS 453
                 S L SL L+ N L  +IP   L  L++L +L++  N       G        + 
Sbjct: 412 PTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLRDLKLWLNMLE----GEIPQELMYVK 466

Query: 454 YLKRLEITGASNLTRVRKGA----FADNLNLETLTLNKNPKLKIIEEDALVG-------- 501
            L+ L +   ++LT    G      ++  NL  ++L+ N          L G        
Sbjct: 467 TLETLIL-DFNDLT----GEIPSGLSNCTNLNWISLSNN---------RLTGEIPKWIGR 512

Query: 502 LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 536
           L NL  L L  N+F+ +    +     L  +D+  N
Sbjct: 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 73.4 bits (181), Expect = 8e-14
 Identities = 106/553 (19%), Positives = 179/553 (32%), Gaps = 109/553 (19%)

Query: 39  IPSHSN-PSIQRLVLSTNRIKTVDSAIPIYL-------SLQHVDLSHTTWLI--IPIGGF 88
           +       S++ L LS N I     A  +          L+H+ +S    +   + +   
Sbjct: 144 VSGGLKLNSLEVLDLSANSI---SGANVVGWVLSDGCGELKHLAISGNK-ISGDVDVSRC 199

Query: 89  EPQEKLVELQLNHNK---HFPQQIVCSIISPRRVEIF--GQNRISRIDQACFEGLTALRI 143
                L  L ++ N      P      +     ++      N++S          T L++
Sbjct: 200 V---NLEFLDVSSNNFSTGIP-----FLGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251

Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLTNI 202
           L +  NQ    P P    L  L  L +  N FT  + D        L+ LDL G      
Sbjct: 252 LNISSNQF-VGPIPPLP-LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309

Query: 203 SDNAFRGLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS-MLEAGCFKGLSY 260
               F   S L SL L+ N     +P   L K+  L+ L++  N FS  L        + 
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369

Query: 261 LKRL-----EITGA--SNLTRVRKGAFADNLNLETLTLNKN------PKLKTIEEGALVG 307
           L  L       +G    NL +  K        L+ L L  N      P         L  
Sbjct: 370 LLTLDLSSNNFSGPILPNLCQNPKN------TLQELYLQNNGFTGKIPP-------TLSN 416

Query: 308 LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN------PIECGCNILWLREMLVRR 360
              L  L+L  N  + +   S+ +  +LR + +  N      P E    +  L  +++  
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL-MYVKTLETLILDF 475

Query: 361 NT-----SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG--------LSGL 407
           N       +   N        +L  +             ++S+N   G        L  L
Sbjct: 476 NDLTGEIPSGLSNC------TNLNWI-------------SLSNNRLTGEIPKWIGRLENL 516

Query: 408 RSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS-MLEAGCFKGLSYLKRLEITGASN 465
             L L++N    +IP  +L     L  L++  N F+  + A  FK    +    I G   
Sbjct: 517 AILKLSNNSFSGNIP-AELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK-- 573

Query: 466 LTRVRKGAFADNLNLETLTLNKNP-KLKIIEEDALVGLPNLYHLNLKENAFT-SFSESML 523
               R     ++   +      N  + + I  + L  L      N+    +    S +  
Sbjct: 574 ----RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD 629

Query: 524 AWPELRTIDIAEN 536
               +  +D++ N
Sbjct: 630 NNGSMMFLDMSYN 642

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 4e-13
 Identities = 81/461 (17%), Positives = 141/461 (30%), Gaps = 88/461 (19%)

Query: 39  IPSHSN-PSIQRLVLSTNRIKTVDSAIPIYL----SLQHVDLSHTTWLIIPIGGFEPQE- 92
           IP   +  ++Q L +S N++          +     L+ +++S          G  P   
Sbjct: 216 IPFLGDCSALQHLDISGNKL---SGDFSRAISTCTELKLLNISSNQ-----FVGPIPPLP 267

Query: 93  --KLVELQLNHNK---HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
              L  L L  NK     P  +  +  +   +++   N         F   + L  L L 
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL-SGNHFYGAVPPFFGSCSLLESLALS 326

Query: 148 DNQLR-SVPTPSFIYLGMLAELRVGLNVFT-TLADGAFNGLGRLSALDLRGAGLT----- 200
            N     +P  + + +  L  L +  N F+  L +   N    L  LDL     +     
Sbjct: 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP 386

Query: 201 -------------NISDNAFRG--------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLE 238
                         + +N F G         S L SL L+ N L  +IP   L  L++L 
Sbjct: 387 NLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP-SSLGSLSKLR 445

Query: 239 ELEIGQNGFSMLEAG----CFKGLSYLKRLEITGASNLTRVRKGA----FADNLNLETLT 290
           +L++  N       G        +  L+ L +   ++LT    G      ++  NL  ++
Sbjct: 446 DLKLWLNMLE----GEIPQELMYVKTLETLIL-DFNDLT----GEIPSGLSNCTNLNWIS 496

Query: 291 LNKNPKLK-TIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN------ 342
           L+ N +L   I +  +  L NL  L L  N+F+ +    +     L  +D+  N      
Sbjct: 497 LSNN-RLTGEIPKW-IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554

Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
           P         +    +         N                           I      
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDG---------MKKECHGAGNLLEFQGIRSEQLN 605

Query: 403 GLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS 442
            LS      +T                  +  L++  N  S
Sbjct: 606 RLSTRNPCNITSRVYGGHTS-PTFDNNGSMMFLDMSYNMLS 645

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.0 bits (97), Expect = 9e-04
 Identities = 34/179 (18%), Positives = 61/179 (34%), Gaps = 20/179 (11%)

Query: 365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTK 423
           V C          + S+          G + +S +    L+GL SL L+++ +  S+   
Sbjct: 45  VTCRD------DKVTSIDLSSKPLNV-GFSAVSSS-LLSLTGLESLFLSNSHINGSVS-- 94

Query: 424 QLSKLTRLEELEIGQNGFSML--EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
                  L  L++ +N  S            S LK L ++  +     +        +LE
Sbjct: 95  GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLE 154

Query: 482 TLTLNKNPKL--KIIEEDALVG-LPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAEN 536
            L L+ N  +    +    L      L HL +  N  +     S      L  +D++ N
Sbjct: 155 VLDLSAN-SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC--VNLEFLDVSSN 210

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 78.6 bits (194), Expect = 6e-17
 Identities = 46/131 (35%), Positives = 67/131 (51%), Gaps = 5/131 (3%)

Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
            L +  N   +L +G F+ L  L+ L L G  L ++ +  F  L+ L  L L+ N+LQS+
Sbjct: 32  YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91

Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL- 284
           P     KLT+L+EL +  N    L  G F  L+ LK L +    N L  V  G F D L 
Sbjct: 92  PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY--QNQLKSVPDGVF-DRLT 148

Query: 285 NLETLTLNKNP 295
           +L+ + L+ NP
Sbjct: 149 SLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 75.1 bits (185), Expect = 1e-15
 Identities = 39/121 (32%), Positives = 62/121 (51%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N +  +    F+ LT+L  LYL  N+L+S+P   F  L  L  L +  N   +L +G F+
Sbjct: 38  NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFD 97

Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ 244
            L +L  L L    L ++ D  F  L+ L+ L L  N+L+S+P     +LT L+ + +  
Sbjct: 98  KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHD 157

Query: 245 N 245
           N
Sbjct: 158 N 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 72.0 bits (177), Expect = 1e-14
 Identities = 49/173 (28%), Positives = 73/173 (42%), Gaps = 18/173 (10%)

Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
           P  C C+            T+ V C S       + I      L      L ++ +  F 
Sbjct: 2   PSRCSCS-----------GTT-VECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFD 49

Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
            L+ L  L L  N+LQS+P    +KLT L  L +  N    L  G F  L+ LK L +  
Sbjct: 50  ELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-- 107

Query: 463 ASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
            +N L  +  G F D L  L+ L L +N +LK + +     L +L ++ L +N
Sbjct: 108 NTNQLQSLPDGVF-DKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 69.3 bits (170), Expect = 1e-13
 Identities = 48/184 (26%), Positives = 73/184 (39%), Gaps = 45/184 (24%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           LDL    L ++ +  F  L+ L  L L  N+LQS+P    +KLT L  L +  N    L 
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPN 310
            G F                          D L  L+ L LN N +L+++ +G    L  
Sbjct: 93  NGVF--------------------------DKLTQLKELALNTN-QLQSLPDGVFDKLTQ 125

Query: 311 LYHLNLKEN--------AFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRN 361
           L  L L +N         F   +        L+ I + +NP +C C  I +L E +  ++
Sbjct: 126 LKDLRLYQNQLKSVPDGVFDRLT-------SLQYIWLHDNPWDCTCPGIRYLSEWI-NKH 177

Query: 362 TSAV 365
           +  V
Sbjct: 178 SGVV 181

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 25/169 (14%)

Query: 53  STNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCS 112
            +    +V + IP      ++DL   +   +P G F+    L +L L             
Sbjct: 15  YSQGRTSVPTGIPA--QTTYLDLETNSLKSLPNGVFDELTSLTQLYLG------------ 60

Query: 113 IISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGL 172
                       N++  +    F  LT+L  L L  NQL+S+P   F  L  L EL +  
Sbjct: 61  -----------GNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNT 109

Query: 173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
           N   +L DG F+ L +L  L L    L ++ D  F  L+ L+ + L DN
Sbjct: 110 NQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 81.3 bits (200), Expect = 2e-16
 Identities = 55/320 (17%), Positives = 104/320 (32%), Gaps = 72/320 (22%)

Query: 47  IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQ-LNHNKHF 105
           +   +  +  IK +      +      +L         +     Q +L  +  +      
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKK-----SVTDAVTQNELNSIDQII----- 49

Query: 106 PQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML 165
                              + I  +     + L  +  L+L+ N+L  +       L  L
Sbjct: 50  ----------------ANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI--KPLTNLKNL 89

Query: 166 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS 225
             L +  N    L+  +   L +L +L L   G+++I+      L  L SL L +N++  
Sbjct: 90  GWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITD 145

Query: 226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN 285
           I    LS+LT+L+ L +  N  S                +I   + LT            
Sbjct: 146 ITV--LSRLTKLDTLSLEDNQIS----------------DIVPLAGLT-----------K 176

Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML----AWPELRTIDIAE 341
           L+ L L+KN  +  +    L GL NL  L L      +   +          ++  D + 
Sbjct: 177 LQNLYLSKN-HISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 342 NPIECGCNILWLREMLVRRN 361
              E   +     +  V+ +
Sbjct: 234 VTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 8e-15
 Identities = 51/347 (14%), Positives = 103/347 (29%), Gaps = 98/347 (28%)

Query: 213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 272
           +   +     ++ I            +  + +   +                +    + L
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVT----------------DAVTQNEL 42

Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
                       +++ +  N +  +K+++   +  LPN+  L L  N  T     +    
Sbjct: 43  N-----------SIDQIIANNS-DIKSVQ--GIQYLPNVTKLFLNGNKLTDIK-PLTNLK 87

Query: 333 ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAG 392
            L  + + EN I                                                
Sbjct: 88  NLGWLFLDENKI------------------------------------------------ 99

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
             ++S  + + L  L+SL L  N +  I    L  L +LE L +G N  + +       L
Sbjct: 100 -KDLS--SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRL 152

Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
           + L  L +   + ++ +     A    L+ L L+KN    I +  AL GL NL  L L  
Sbjct: 153 TKLDTLSLED-NQISDIV--PLAGLTKLQNLYLSKN---HISDLRALAGLKNLDVLELFS 206

Query: 513 NAFTSFSESML----AWPELRTIDIAENPIECGCNILWLREMLVRRN 555
               +   +          ++  D +    E   +     +  V+ +
Sbjct: 207 QECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 64.7 bits (157), Expect = 4e-11
 Identities = 52/300 (17%), Positives = 96/300 (32%), Gaps = 44/300 (14%)

Query: 30  NLQEANL------DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLII 83
              + NL      D +  +   SI +++ + + IK+V   I    ++  + L+     + 
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN--KLT 78

Query: 84  PIGGFEPQEKLVELQLNHNK--------HFPQ---------QIVCSIISP-------RRV 119
            I      + L  L L+ NK           +          I  S I+          +
Sbjct: 79  DIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHLPQLESL 136

Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
            + G N+I+ I       LT L  L L+DNQ+  +       L  L  L +  N  + L 
Sbjct: 137 YL-GNNKITDIT--VLSRLTKLDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHISDLR 191

Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
             A  GL  L  L+L      N   N    L    ++  TD  L +     +S     E+
Sbjct: 192 --ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI--ISDDGDYEK 247

Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
             +  +         F     +   +     +    +       ++ +        K++ 
Sbjct: 248 PNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 77.4 bits (191), Expect = 3e-16
 Identities = 39/130 (30%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 167 ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 226
            L +  N  T L  G F+ L  L  L L    L  +    F  L+ L  L L  N+L  +
Sbjct: 44  ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL 103

Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-N 285
           P+    +L  L+EL +  N  + L  G  + L++L  L +   + L  +  GAF D L +
Sbjct: 104 PSAVFDRLVHLKELFMCCNKLTELPRG-IERLTHLTHLALD-QNQLKSIPHGAF-DRLSS 160

Query: 286 LETLTLNKNP 295
           L    L  NP
Sbjct: 161 LTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 49/173 (28%), Positives = 77/173 (44%), Gaps = 19/173 (10%)

Query: 343 PIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFR 402
           P +C C+            T+ V C S       + I  +A+ L      +T +    F 
Sbjct: 14  PSQCSCS-----------GTT-VDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFD 61

Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
            L  L+ L L  N+L ++P      LT+L  L++G N  ++L +  F  L +LK L +  
Sbjct: 62  SLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM-- 119

Query: 463 ASN-LTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
             N LT + +G   + L +L  L L++N +LK I   A   L +L H  L  N
Sbjct: 120 CCNKLTELPRG--IERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 24/163 (14%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
           + L L DN++  +       L  L+EL +G N    L  G F  L+ L  L++   +N L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG--TNQL 100

Query: 273 TRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN--------AFTS 323
           T +    F D L +L+ L +  N KL  +  G +  L +L HL L +N        AF  
Sbjct: 101 TVLPSAVF-DRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIPHGAFDR 157

Query: 324 FSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAV 365
            S        L    +  NP +C C  I++LR  +   +TS  
Sbjct: 158 LS-------SLTHAYLFGNPWDCECRDIMYLRNWV-ADHTSIA 192

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 30/173 (17%)

Query: 28  SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWL 81
           SC+    +        +P+    + Q L L  N+I  ++  +   L  L+ + L      
Sbjct: 18  SCSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG 77

Query: 82  IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
            +P+G F+   +L  L L                         N+++ +  A F+ L  L
Sbjct: 78  ALPVGVFDSLTQLTVLDLG-----------------------TNQLTVLPSAVFDRLVHL 114

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
           + L++  N+L  +P      L  L  L +  N   ++  GAF+ L  L+   L
Sbjct: 115 KELFMCCNKLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 75.4 bits (186), Expect = 7e-16
 Identities = 29/161 (18%), Positives = 58/161 (36%), Gaps = 12/161 (7%)

Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           +  L+ + L    +T+++         ++ L + +    +     +S L+ LE L I   
Sbjct: 43  MNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGK 98

Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
             +  +     GL+ L  L+I   S               + ++ L+ N  +  I    L
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PL 155

Query: 306 VGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPI 344
             LP L  LN++ +    +   E     P+L  +      I
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 72.3 bits (178), Expect = 8e-15
 Identities = 29/204 (14%), Positives = 59/204 (28%), Gaps = 36/204 (17%)

Query: 120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA 179
            + GQ+  + I +A    + +L  + L +  +  +                         
Sbjct: 28  GLLGQSSTANITEA---QMNSLTYITLANINVTDLT------------------------ 60

Query: 180 DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE 239
                    +  L +     TN +     GLS L  L +    + S     LS LT L  
Sbjct: 61  --GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKT 299
           L+I  +            L  +  ++++    +T +          L++L +  +  +  
Sbjct: 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD-GVHD 173

Query: 300 IEEGALVGLPNLYHLNLKENAFTS 323
                +   P L  L         
Sbjct: 174 YR--GIEDFPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.0 bits (172), Expect = 5e-14
 Identities = 32/173 (18%), Positives = 62/173 (35%), Gaps = 14/173 (8%)

Query: 368 NSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK 427
           +S A +    + SL    +  A   +T+++         ++ L + +    +     +S 
Sbjct: 33  SSTANITEAQMNSL--TYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISG 86

Query: 428 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487
           L+ LE L I     +  +     GL+ L  L+I   S               + ++ L+ 
Sbjct: 87  LSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI-SHSAHDDSILTKINTLPKVNSIDLSY 145

Query: 488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFS--ESMLAWPELRTIDIAENPI 538
           N  +  I    L  LP L  LN++ +    +   E     P+L  +      I
Sbjct: 146 NGAITDIM--PLKTLPELKSLNIQFDGVHDYRGIEDF---PKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.4 bits (155), Expect = 8e-12
 Identities = 24/134 (17%), Positives = 44/134 (32%), Gaps = 7/134 (5%)

Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
           +DL       TN +     GLS L  L +    + S     LS LT L  L+I  +    
Sbjct: 69  KDLTINNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 503
                   L  +  ++++    +T +          L++L +  +    + +   +   P
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFD---GVHDYRGIEDFP 181

Query: 504 NLYHLNLKENAFTS 517
            L  L         
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 21/131 (16%), Positives = 46/131 (35%), Gaps = 7/131 (5%)

Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
                 +  +     GL+ L  L +    + S   P+   L  L  L +  +        
Sbjct: 73  INNIHATNYN--PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 182 AFNGLGRLSALDLRG-AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
             N L +++++DL     +T+I     + L  L+SL +  + +     + +    +L +L
Sbjct: 131 KINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQL 186

Query: 241 EIGQNGFSMLE 251
                     +
Sbjct: 187 YAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 6e-08
 Identities = 29/237 (12%), Positives = 70/237 (29%), Gaps = 61/237 (25%)

Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 270
           S  ++ +       S      +++  L  + +     + L      G+ Y   ++    +
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLT-----GIEYAHNIKDLTIN 74

Query: 271 NLTRVRK-GAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
           N          +   NLE L +     + + +   L GL +L  L++  +A      + +
Sbjct: 75  N-IHATNYNPISGLSNLERLRIMGK-DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 330 AW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
              P++ +ID++ N                                              
Sbjct: 133 NTLPKVNSIDLSYNG--------------------------------------------- 147

Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
               +T+I     + L  L+SL +  + +     + +    +L +L          +
Sbjct: 148 ---AITDIM--PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAFSQTIGGKK 197

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 41/225 (18%), Positives = 85/225 (37%), Gaps = 19/225 (8%)

Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
           I     I+ I       L     +    + +    T     L  +  L       TT+  
Sbjct: 3   ITQPTAINVIF--PDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE- 57

Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
                L  L  L+L+   +T+++    + L+ +  L L+ N L+++    ++ L  ++ L
Sbjct: 58  -GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300
           ++     + +      GLS L+ L +   + +T +     A   NL+ L++    ++  +
Sbjct: 113 DLTSTQITDVTP--LAGLSNLQVLYL-DLNQITNIS--PLAGLTNLQYLSIGNA-QVSDL 166

Query: 301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
               L  L  L  L   +N  +  S  + + P L  + +  N I 
Sbjct: 167 T--PLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQIS 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 49/278 (17%), Positives = 97/278 (34%), Gaps = 53/278 (19%)

Query: 30  NLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
              ++N+    + ++   I  L      + T+   +    +L  ++L      I  +   
Sbjct: 25  AAGKSNVTDTVTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDN--QITDLAPL 81

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPR-----RVEIFGQNRISRIDQACFEGLTALRI 143
           +   K+ EL+L+ N       + ++ +       +       +I+ +      GL+ L++
Sbjct: 82  KNLTKITELELSGNP------LKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQV 133

Query: 144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS 203
           LYLD NQ+ ++                              GL  L  L +  A +++++
Sbjct: 134 LYLDLNQITNIS--------------------------PLAGLTNLQYLSIGNAQVSDLT 167

Query: 204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
                 LS L +L   DN++  I    L+ L  L E+ +  N  S +        S L  
Sbjct: 168 --PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFI 221

Query: 264 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE 301
           + +T       +       N NL    + K P    I 
Sbjct: 222 VTLTN----QTITNQPVFYNNNLVVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.9 bits (174), Expect = 1e-13
 Identities = 55/315 (17%), Positives = 95/315 (30%), Gaps = 94/315 (29%)

Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
            L+    +    + +    T   + L  +  L     G + +E     G+ YL       
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE-----GVQYLN------ 63

Query: 269 ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM 328
                           NL  L L  N ++  +    L  L  +  L L  N   +   ++
Sbjct: 64  ----------------NLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNV-SAI 103

Query: 329 LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGC 388
                ++T+D+    I                                            
Sbjct: 104 AGLQSIKTLDLTSTQI-------------------------------------------- 119

Query: 389 AGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGC 448
                T+++     GLS L+ L L  N++ +I    L+ LT L+ L IG    S L    
Sbjct: 120 -----TDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-- 168

Query: 449 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
              LS L  L+    + ++ +     A   NL  + L  N   +I +   L    NL+ +
Sbjct: 169 LANLSKLTTLKADD-NKISDIS--PLASLPNLIEVHLKNN---QISDVSPLANTSNLFIV 222

Query: 509 NLKENAFTSFSESML 523
            L     T+      
Sbjct: 223 TLTNQTITNQPVFYN 237

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 54/255 (21%), Positives = 96/255 (37%), Gaps = 46/255 (18%)

Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 343
           N   +   K+  +          L  +  L+      T+      L    L  +++ +N 
Sbjct: 20  NAIKIAAGKS-NVTDTVT--QADLDGITTLSAFGTGVTTIEGVQYL--NNLIGLELKDNQ 74

Query: 344 IECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG 403
           I                          APLK  +L  +   +L  +G  L N+S  A  G
Sbjct: 75  IT-----------------------DLAPLK--NLTKI--TELELSGNPLKNVS--AIAG 105

Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
           L  +++L LT  ++  +    L+ L+ L+ L +  N  + +      GL+ L+ L I G 
Sbjct: 106 LQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI-GN 160

Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
           + ++ +     A+   L TL  + N   KI +   L  LPNL  ++LK N  +  S  + 
Sbjct: 161 AQVSDLT--PLANLSKLTTLKADDN---KISDISPLASLPNLIEVHLKNNQISDVSP-LA 214

Query: 524 AWPELRTIDIAENPI 538
               L  + +    I
Sbjct: 215 NTSNLFIVTLTNQTI 229

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 59.3 bits (144), Expect = 7e-10
 Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 15/157 (9%)

Query: 384 EDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM 443
             L   G G+T I     + L+ L  L L DN++  +    L  LT++ ELE+  N    
Sbjct: 44  TTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN 99

Query: 444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLP 503
           + A    GL  +K L++  ++ +T V     A   NL+ L L+ N   +I     L GL 
Sbjct: 100 VSA--IAGLQSIKTLDL-TSTQITDVT--PLAGLSNLQVLYLDLN---QITNISPLAGLT 151

Query: 504 NLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIE 539
           NL +L++     +  +  + L   +L T+   +N I 
Sbjct: 152 NLQYLSIGNAQVSDLTPLANL--SKLTTLKADDNKIS 186

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 71.9 bits (177), Expect = 9e-15
 Identities = 42/180 (23%), Positives = 70/180 (38%), Gaps = 30/180 (16%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
             L L  N+   +P K+LS    L  +++  N  S L    F  ++ L  L ++  + L 
Sbjct: 34  TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLR 91

Query: 274 RVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWP 332
            +    F D L +L  L+L+ N  +  + EGA   L  L HL +                
Sbjct: 92  CIPPRTF-DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI---------------- 133

Query: 333 ELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAPLKYKSLISLSAEDLGCAG 390
                    NP+ C CN+ WL + +    +      C  P  +  K L++  ++   CA 
Sbjct: 134 -------GANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKKFTCAA 186

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 30/175 (17%)

Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
             L L  N+   +P K+LS    L  +++  N  S L    F  ++ L  L ++  + L 
Sbjct: 34  TELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLR 91

Query: 468 RVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWP 526
            +    F D L +L  L+L+ N  + ++ E A   L  L HL +                
Sbjct: 92  CIPPRTF-DGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAI---------------- 133

Query: 527 ELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAPLKYKSLISLSAED 579
                    NP+ C CN+ WL + +    +      C  P  +  K L++  ++ 
Sbjct: 134 -------GANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEMADKLLLTTPSKK 181

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 3/92 (3%)

Query: 399 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 458
                   L  + L++NR+ ++  +  S +T+L  L +  N    +    F GL  L+ L
Sbjct: 48  KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL 107

Query: 459 EITGASNLTRVRKGAFADNL-NLETLTLNKNP 489
            + G ++++ V +GAF ++L  L  L +  NP
Sbjct: 108 SLHG-NDISVVPEGAF-NDLSALSHLAIGANP 137

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N+ + + +        L ++ L +N++ ++   SF  +  L  L +  N    +    F+
Sbjct: 41  NQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFD 99

Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
           GL  L  L L G  ++ + + AF  LS L  L +  N
Sbjct: 100 GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 37/151 (24%), Positives = 58/151 (38%), Gaps = 28/151 (18%)

Query: 28  SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLI 82
           +C           L V+P      +  L L  N+   V   +  Y  L  +DLS+     
Sbjct: 9   TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68

Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
           +    F    +L+ L L++N     ++ C    P R                F+GL +LR
Sbjct: 69  LSNQSFSNMTQLLTLILSYN-----RLRCI---PPRT---------------FDGLKSLR 105

Query: 143 ILYLDDNQLRSVPTPSFIYLGMLAELRVGLN 173
           +L L  N +  VP  +F  L  L+ L +G N
Sbjct: 106 LLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 59/321 (18%), Positives = 105/321 (32%), Gaps = 44/321 (13%)

Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG-LGRLSALD 193
            + L+  +  Y  D                              AD   +       AL+
Sbjct: 29  HDVLSQWQRHYNADRNRWHSAW-RQANSNNPQIETRTGRALKATADLLEDATQPGRVALE 87

Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 253
           LR   L    D AFR LS L+ + +    L  +P   + +   LE L + +N    L A 
Sbjct: 88  LRSVPLPQFPDQAFR-LSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPAS 145

Query: 254 CFKGLSYLKRLEITGASNLTRV-------RKGAFADNL-NLETLTLNKNPKLKTIEEGAL 305
               L+ L+ L I     LT +               L NL++L L     ++++    +
Sbjct: 146 -IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-I 202

Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
             L NL  L ++ +  ++   ++   P+L  +D+       GC  L              
Sbjct: 203 ANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDL------RGCTAL---RNY-------- 245

Query: 366 FCNSPAPLKY-KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPTK 423
               P        L  L  +D     + L  +  +    L+ L  L L     L  +P  
Sbjct: 246 ----PPIFGGRAPLKRLILKD----CSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP-S 295

Query: 424 QLSKLTRLEELEIGQNGFSML 444
            +++L     + +  +  + L
Sbjct: 296 LIAQLPANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.2 bits (170), Expect = 6e-13
 Identities = 59/316 (18%), Positives = 113/316 (35%), Gaps = 27/316 (8%)

Query: 210 LSGLRSLVLTD-NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
            SG  +L       L+      LS+  R    +  +   +          +  +    TG
Sbjct: 11  SSGRENLYFQGSTALRPYHD-VLSQWQRHYNADRNRWHSA----WRQANSNNPQIETRTG 65

Query: 269 ASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM 328
            +          A       L L     L    +     L +L H+ +         ++M
Sbjct: 66  RALKATADLLEDATQPGRVALELRSV-PLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTM 123

Query: 329 LAWPELRTIDIAENPIEC----GCNILWLREMLVRRNTS-----AVFCNSPAPLKYKSLI 379
             +  L T+ +A NP+        ++  LRE+ +R             ++ A  +++ L+
Sbjct: 124 QQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 380 SLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 439
           +L  + L     G+ ++  +    L  L+SL + ++ L ++    +  L +LEEL++   
Sbjct: 184 NL--QSLRLEWTGIRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL--R 237

Query: 440 GFSMLEA--GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
           G + L      F G + LKRL +   SNL  +          LE L L     L  +   
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPS- 295

Query: 498 ALVGLPNLYHLNLKEN 513
            +  LP    + +  +
Sbjct: 296 LIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 2e-11
 Identities = 62/303 (20%), Positives = 100/303 (33%), Gaps = 66/303 (21%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
           +    +A  D++   + P    L L +  +            LQH+ +            
Sbjct: 64  TGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA--------- 114

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
                 L+EL        P  +                               L  L L 
Sbjct: 115 -----GLMEL--------PDTMQQ--------------------------FAGLETLTLA 135

Query: 148 DNQLRSVPTPSFIYLGMLAELRV-GLNVFTTL--------ADGAFNGLGRLSALDLRGAG 198
            N LR++P  S   L  L EL +      T L        A G   GL  L +L L   G
Sbjct: 136 RNPLRALP-ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA--GCFK 256
           + ++  +    L  L+SL + ++ L ++    +  L +LEEL++   G + L      F 
Sbjct: 195 IRSLPAS-IANLQNLKSLKIRNSPLSALG-PAIHHLPKLEELDL--RGCTALRNYPPIFG 250

Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL 316
           G + LKRL +   SNL  +          LE L L     L  +    +  LP    + +
Sbjct: 251 GRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLPSL-IAQLPANCIILV 308

Query: 317 KEN 319
             +
Sbjct: 309 PPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 45/269 (16%), Positives = 83/269 (30%), Gaps = 47/269 (17%)

Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
             E L    +  L+   +  L      Y+ +                          +  
Sbjct: 13  GRENLYFQGSTALRPYHDV-LSQWQRHYNADRNR----------------------WHSA 49

Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404
               N    +             +          ++L   +L      L    D AFR L
Sbjct: 50  WRQANSNNPQIETRTGRALKATADLLEDATQPGRVAL---ELRSVP--LPQFPDQAFR-L 103

Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
           S L+ + +    L  +P   + +   LE L + +N    L A     L+ L+ L I    
Sbjct: 104 SHLQHMTIDAAGLMELP-DTMQQFAGLETLTLARNPLRALPAS-IASLNRLRELSIRACP 161

Query: 465 NLTRV-------RKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT 516
            LT +               L NL++L L     ++ +    +  L NL  L ++ +  +
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIRSLPAS-IANLQNLKSLKIRNSPLS 219

Query: 517 SFSESMLAWPELRTIDIAENPIECGCNIL 545
           +   ++   P+L  +D+       GC  L
Sbjct: 220 ALGPAIHHLPKLEELDL------RGCTAL 242

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 25/221 (11%)

Query: 46  SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP--IGGFEPQEKLVELQLNHN- 102
            +Q + +    +  +   +  +  L+ + L+      +P  I       +L EL +    
Sbjct: 105 HLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLN---RLRELSIRACP 161

Query: 103 --KHFPQQIVCSIISPRRVEI--------FGQNRISRIDQACFEGLTALRILYLDDNQLR 152
                P+ +  S  +    +              I  +  A    L  L+ L + ++ L 
Sbjct: 162 ELTELPEPL-ASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSLKIRNSPLS 219

Query: 153 SVPTPSFIYLGMLAELRV-GLNVFTTLADGAFNGLGRLSALDLRGA-GLTNISDNAFRGL 210
           ++  P+  +L  L EL + G           F G   L  L L+    L  +  +    L
Sbjct: 220 ALG-PAIHHLPKLEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLD-IHRL 276

Query: 211 SGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSML 250
           + L  L L     L  +P   +++L     + +  +  + L
Sbjct: 277 TQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQL 316

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 71.5 bits (175), Expect = 3e-13
 Identities = 55/311 (17%), Positives = 104/311 (33%), Gaps = 31/311 (9%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE 89
            L   NL  +P +  P I  L ++ N + ++        SL+++D        +P    E
Sbjct: 65  QLNRLNLSSLPDNLPPQITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP----E 117

Query: 90  PQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
               L  L +++N+    P+     +           N+++ +     E  T+L +L + 
Sbjct: 118 LPASLKHLDVDNNQLTMLPELP-ALL----EYINADNNQLTMLP----ELPTSLEVLSVR 168

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG---RLSALDLRGAGLTNISD 204
           +NQL  +P         L  L V  N+  +L                   R   +T+I +
Sbjct: 169 NNQLTFLPE----LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224

Query: 205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRL 264
           N    L    +++L DN L S   + LS+ T   +    +  FSM +         L   
Sbjct: 225 N-ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

Query: 265 EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF 324
                    +            E      +  L  + +       +  + +       ++
Sbjct: 284 VTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSD-----TVSARNTSGFREQVAAW 338

Query: 325 SESMLAWPELR 335
            E + A  ELR
Sbjct: 339 LEKLSASAELR 349

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.3 bits (164), Expect = 6e-12
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 32/225 (14%)

Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           +N    + + C   +     L L+   L S+P  +      +  L +  N   +L +   
Sbjct: 46  RNEAVSLLKECL--INQFSELQLNRLNLSSLP-DNL--PPQITVLEITQNALISLPE--- 97

Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
                L  LD     L+ + +      + L+ L + +N+L  +P         LE +   
Sbjct: 98  -LPASLEYLDACDNRLSTLPEL----PASLKHLDVDNNQLTMLP----ELPALLEYINAD 148

Query: 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEE 302
            N  +ML        + L+ L +     LT +      +   +LE L ++ N  L+++  
Sbjct: 149 NNQLTMLPE----LPTSLEVLSVRNN-QLTFL-----PELPESLEALDVSTN-LLESLPA 197

Query: 303 --GALVGLPNLY-HLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
                            +EN  T   E++L+     TI + +NP+
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPL 242

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 66.1 bits (161), Expect = 1e-11
 Identities = 56/424 (13%), Positives = 116/424 (27%), Gaps = 68/424 (16%)

Query: 26  DPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIP- 84
                 +   + ++          L L+   + ++   +P    +  ++++    + +P 
Sbjct: 40  ALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLPE 97

Query: 85  -IGGFEPQEKLVELQLNHNK--HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
                     L  L    N+    P+       S + +++   N+++ +     E    L
Sbjct: 98  LPAS------LEYLDACDNRLSTLPELPA----SLKHLDVDN-NQLTMLP----ELPALL 142

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
             +  D+NQL  +P         L  L V  N  T L +        L ALD+    L +
Sbjct: 143 EYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE----LPESLEALDVSTNLLES 194

Query: 202 ISDNAFRGLS---GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
           +     R              +NR+  IP + +  L     + +  N  S          
Sbjct: 195 LPAVPVRNHHSEETEIFFRCRENRITHIP-ENILSLDPTCTIILEDNPLSSRIRESLSQQ 253

Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318
           +                       N     L           ++  +  + + +      
Sbjct: 254 TAQPDY----HGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHA 309

Query: 319 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL 378
           N F++F + +      R        +       WL ++                    + 
Sbjct: 310 NTFSAFLDRLSDTVSARNTSGFREQVAA-----WLEKL-------------------SAS 345

Query: 379 ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT-------RL 431
             L  +    A     +  D      + LR  +L     + +       L        RL
Sbjct: 346 AELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRL 405

Query: 432 EELE 435
           E LE
Sbjct: 406 EILE 409

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 58/360 (16%), Positives = 106/360 (29%), Gaps = 31/360 (8%)

Query: 172 LNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRG-LSGLRSLVLTDNRLQSIPTKQ 230
            N  +      F+   +     L G              ++    L L    L S+P   
Sbjct: 19  YNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPD-- 76

Query: 231 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT 290
            +   ++  LEI QN    L        + L+ L+    + L+ +         +L+ L 
Sbjct: 77  -NLPPQITVLEITQNALISLPE----LPASLEYLDACD-NRLSTLP----ELPASLKHLD 126

Query: 291 LNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC-GCN 349
           ++ N +L  + E        L ++N   N  T   E       L  + +  N +      
Sbjct: 127 VDNN-QLTMLPE----LPALLEYINADNNQLTMLPELP---TSLEVLSVRNNQLTFLPEL 178

Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS 409
              L  + V  N        P                 C    +T+I +N    L    +
Sbjct: 179 PESLEALDVSTNLLESLPAVPVRN--HHSEETEIF-FRCRENRITHIPEN-ILSLDPTCT 234

Query: 410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV 469
           ++L DN L S   + LS+ T   +    +  FSM +         L            + 
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

Query: 470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELR 529
                      E      +  L  + +       +  + +       ++ E + A  ELR
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLDRLSD-----TVSARNTSGFREQVAAWLEKLSASAELR 349

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 49.2 bits (117), Expect = 3e-06
 Identities = 44/323 (13%), Positives = 89/323 (27%), Gaps = 74/323 (22%)

Query: 215 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 274
           S     N +        S   + E+  +              G +  + + +     +  
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQAL-------------PGENRNEAVSLLKECLIN- 59

Query: 275 VRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPEL 334
                         L LN+   L ++ +      P +  L + +NA  S  E       L
Sbjct: 60  ----------QFSELQLNRL-NLSSLPDN---LPPQITVLEITQNALISLPELP---ASL 102

Query: 335 RTIDIAENPIEC-GCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGL 393
             +D  +N +         L+ + V  N   +    PA L+Y          +      L
Sbjct: 103 EYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEY----------INADNNQL 152

Query: 394 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS 453
           T + +      + L  L + +N+L  +P         LE L++  N    L A       
Sbjct: 153 TMLPEL----PTSLEVLSVRNNQLTFLP----ELPESLEALDVSTNLLESLPA------- 197

Query: 454 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN 513
                      +              +  +     P       + ++ L     + L++N
Sbjct: 198 -----VPVRNHHSEETEIFFRCRENRITHI-----P-------ENILSLDPTCTIILEDN 240

Query: 514 AFTSFSESMLAWPELRTIDIAEN 536
             +S     L+    +       
Sbjct: 241 PLSSRIRESLSQQTAQPDYHGPR 263

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 42/226 (18%), Positives = 77/226 (34%), Gaps = 46/226 (20%)

Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
           I     I+++      GL       L    +  + +                        
Sbjct: 3   IQRPTPINQVF--PDPGLANAVKQNLGKQSVTDLVS------------------------ 36

Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
                L  +   +   + + +++    +  + L+ L L+ N++  +    L  LT+LEEL
Sbjct: 37  --QKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDL--SPLKDLTKLEEL 90

Query: 241 EIGQNGFSMLEAGCFKGLS--YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
            + +N    L       LS  +L   E+    +L            NLE L++  N KLK
Sbjct: 91  SVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSL--------IHLKNLEILSIRNN-KLK 141

Query: 299 TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI 344
           +I    L  L  L  L+L  N  T+    +    ++  ID+     
Sbjct: 142 SIV--MLGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWIDLTGQKC 184

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 40/223 (17%), Positives = 76/223 (34%), Gaps = 51/223 (22%)

Query: 30  NLQEANL------DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLII 83
           N  + NL      D++       +Q      + I+++ + +  + +L+ + LSH    I 
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHN--QIS 76

Query: 84  PIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPR-----RVEIFGQNRISRIDQACFEGL 138
            +   +   KL EL +N N+     +    ++              N +   D      L
Sbjct: 77  DLSPLKDLTKLEELSVNRNR-----L--KNLNGIPSACLSRLFLDNNELRDTD--SLIHL 127

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
             L IL + +N+L+S+                               L +L  LDL G  
Sbjct: 128 KNLEILSIRNNKLKSIV--------------------------MLGFLSKLEVLDLHGNE 161

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
           +TN        L  +  + LT  +  + P K   +L     ++
Sbjct: 162 ITNTGG--LTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 38/250 (15%), Positives = 79/250 (31%), Gaps = 68/250 (27%)

Query: 290 TLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGC 348
           ++ +   +  +      GL N    NL + + T       L    ++  +   + I+   
Sbjct: 2   SIQRPTPINQVFP--DPGLANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQSLA 57

Query: 349 NILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
            +                         +   +L  ++L  +   ++++S    + L+ L 
Sbjct: 58  GM-------------------------QFFTNL--KELHLSHNQISDLS--PLKDLTKLE 88

Query: 409 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR 468
            L +  NRL+++    +     L  L +  N     +      L +LK            
Sbjct: 89  ELSVNRNRLKNLNG--IPSAC-LSRLFLDNNELRDTD-----SLIHLK------------ 128

Query: 469 VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 528
                     NLE L++  N   K+     L  L  L  L+L  N  T+    +    ++
Sbjct: 129 ----------NLEILSIRNN---KLKSIVMLGFLSKLEVLDLHGNEITNTG-GLTRLKKV 174

Query: 529 RTIDIAENPI 538
             ID+     
Sbjct: 175 NWIDLTGQKC 184

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 68.2 bits (167), Expect = 8e-13
 Identities = 44/202 (21%), Positives = 83/202 (41%), Gaps = 16/202 (7%)

Query: 122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG 181
              + I  +     + L  +  L+L+ N+L  +       L  L  L +  N    L+  
Sbjct: 53  ANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLS-- 106

Query: 182 AFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 241
           +   L +L +L L   G+++I+      L  L SL L +N++  I    LS+LT+L+ L 
Sbjct: 107 SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLS 162

Query: 242 IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE 301
           +  N  S +      GL+ L+ L ++  ++++ +R  A A   NL+ L L          
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSK-NHISDLR--ALAGLKNLDVLELFSQE-CLNKP 216

Query: 302 EGALVGLPNLYHLNLKENAFTS 323
                 L     +   + +  +
Sbjct: 217 INHQSNLVVPNTVKNTDGSLVT 238

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 46/291 (15%), Positives = 102/291 (35%), Gaps = 48/291 (16%)

Query: 200 TNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 258
           T I    +    +      L    +    T   ++L  ++++    +    ++     G+
Sbjct: 12  TPIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-----GI 64

Query: 259 SYLKRLEITGASNLTRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
            YL  +     +   ++       NL NL  L L++N K+K +   +L  L  L  L+L+
Sbjct: 65  QYLPNVTKLFLNG-NKLTDIKPLANLKNLGWLFLDEN-KVKDLS--SLKDLKKLKSLSLE 120

Query: 318 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
            N  +     ++  P+L ++ +  N I     +                           
Sbjct: 121 HNGISDI-NGLVHLPQLESLYLGNNKITDITVL-------------------------SR 154

Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
           L  L  + L      +++I      GL+ L++L L+ N +  +  + L+ L  L+ LE+ 
Sbjct: 155 LTKL--DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELF 208

Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
                         L     ++    ++ + V     +D+ + E   +  +
Sbjct: 209 SQECLNKPINHQSNLVVPNTVKN---TDGSLVTPEIISDDGDYEKPNVKWH 256

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 50/254 (19%), Positives = 92/254 (36%), Gaps = 45/254 (17%)

Query: 286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPI 344
           L + T+     +K I   +          NLK+ + T     + L    +  I    + I
Sbjct: 3   LGSETITVPTPIKQIF--SDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDI 58

Query: 345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL 404
           +                       S   ++Y  L ++    L   G  LT+I       L
Sbjct: 59  K-----------------------SVQGIQY--LPNV--TKLFLNGNKLTDIKP--LANL 89

Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
             L  L L +N+++ + +  L  L +L+ L +  NG S +       L  L+ L + G +
Sbjct: 90  KNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDING--LVHLPQLESLYL-GNN 144

Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA 524
            +T +     +    L+TL+L  N   +I +   L GL  L +L L +N  +     +  
Sbjct: 145 KITDIT--VLSRLTKLDTLSLEDN---QISDIVPLAGLTKLQNLYLSKNHISDLRA-LAG 198

Query: 525 WPELRTIDIAENPI 538
              L  +++     
Sbjct: 199 LKNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 45/260 (17%), Positives = 82/260 (31%), Gaps = 49/260 (18%)

Query: 285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENP 343
                 L K   +          L ++  +    +   S      L  P +  + +  N 
Sbjct: 25  ETIKDNLKKK-SVTDAVT--QNELNSIDQIIANNSDIKSVQGIQYL--PNVTKLFLNGNK 79

Query: 344 IECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG 403
           +     +                          +L +L    L      + ++S  + + 
Sbjct: 80  LTDIKPL-------------------------ANLKNL--GWLFLDENKVKDLS--SLKD 110

Query: 404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA 463
           L  L+SL L  N +  I    L  L +LE L +G N  + +       L+ L  L +   
Sbjct: 111 LKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLED- 165

Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
           + ++ +     A    L+ L L+KN    I +  AL GL NL  L L      +   +  
Sbjct: 166 NQISDIV--PLAGLTKLQNLYLSKN---HISDLRALAGLKNLDVLELFSQECLNKPINHQ 220

Query: 524 ----AWPELRTIDIAENPIE 539
                   ++  D +    E
Sbjct: 221 SNLVVPNTVKNTDGSLVTPE 240

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 64.6 bits (158), Expect = 2e-12
 Identities = 30/97 (30%), Positives = 47/97 (48%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N++  +    F+ LT L  L L  NQ++S+P   F  L  L  L +  N   +L +G F+
Sbjct: 38  NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFD 97

Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
            L +L  L L    L ++ D  F  L+ L+ + L  N
Sbjct: 98  KLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 63.8 bits (156), Expect = 4e-12
 Identities = 42/132 (31%), Positives = 60/132 (45%), Gaps = 15/132 (11%)

Query: 365 VFCNSPAPLKYKSL------ISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ 418
           + CNS      K L      I  SA  L      L ++    F  L+ L  L L+ N++Q
Sbjct: 12  IRCNS------KGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65

Query: 419 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL 478
           S+P     KLT+L  L + +N    L  G F  L+ LK L +   + L  V  G F D L
Sbjct: 66  SLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIF-DRL 123

Query: 479 -NLETLTLNKNP 489
            +L+ + L+ NP
Sbjct: 124 TSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 33/107 (30%), Positives = 58/107 (54%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
           ++   L L+ N+L+S+P   F  L  L +L +  N   +L DG F+ L +L+ L L    
Sbjct: 28  SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L ++ +  F  L+ L+ L L  N+L+S+P     +LT L+++ +  N
Sbjct: 88  LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 6/108 (5%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
             L L  N+LQS+P     KLT+L +L + QN    L  G F  L+ L  L +    N L
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL--HENKL 88

Query: 273 TRVRKGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
             +  G F D L  L+ L L+ N +LK++ +G    L +L  + L  N
Sbjct: 89  QSLPNGVF-DKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 134

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 27/129 (20%)

Query: 168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP 227
           L +  N   +L  G F+ L +L+ L L    + ++ D  F  L+ L  L L +N+LQS+P
Sbjct: 33  LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92

Query: 228 TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL-NL 286
                KLT+L+EL +  N                          L  V  G F D L +L
Sbjct: 93  NGVFDKLTQLKELALDTN-------------------------QLKSVPDGIF-DRLTSL 126

Query: 287 ETLTLNKNP 295
           + + L+ NP
Sbjct: 127 QKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 42/144 (29%), Positives = 62/144 (43%), Gaps = 29/144 (20%)

Query: 28  SCNLQEAN-----LDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS-LQHVDLSHTTWL 81
           SC+  E       L  +P+    S  RL L +N+++++   +   L+ L  + LS     
Sbjct: 6   SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65

Query: 82  IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
            +P G F+   KL  L L+ NK      + S+  P  V               F+ LT L
Sbjct: 66  SLPDGVFDKLTKLTILYLHENK------LQSL--PNGV---------------FDKLTQL 102

Query: 142 RILYLDDNQLRSVPTPSFIYLGML 165
           + L LD NQL+SVP   F  L  L
Sbjct: 103 KELALDTNQLKSVPDGIFDRLTSL 126

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 68.3 bits (166), Expect = 5e-12
 Identities = 97/625 (15%), Positives = 187/625 (29%), Gaps = 195/625 (31%)

Query: 25  RDPSCN-LQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQH------VDLSH 77
            +  C  +Q+    ++   S   I  +++S + +          LS Q       V+   
Sbjct: 31  DNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVL 87

Query: 78  TT---WLIIPIGGFEPQEKLVELQL---NHNKHFPQQIVCSIISPRRVEIFGQNRISRID 131
                +L+ PI   E ++  +  ++     ++ +              ++F +  +SR+ 
Sbjct: 88  RINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLY-----------NDNQVFAKYNVSRLQ 135

Query: 132 QACFEGLTALRI-LYLDDNQLRSVPTPSFIYL-GMLAELRVGLNVF--TTLADGAFNGLG 187
                    LR  L     +LR       + + G+L     G      T +A        
Sbjct: 136 P-----YLKLRQALL----ELRPAK---NVLIDGVL-----G---SGKTWVALDVCLSYK 175

Query: 188 RLSALDLR----GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 243
               +D +         N  +     L  L   +  D    S      +   R+  +   
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSI--- 230

Query: 244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG----AFADNLNLETLTLNKNPKLKT 299
           Q     L     K   Y   L +     L  V+      AF  NL+ + L   +  ++  
Sbjct: 231 QAELRRL----LKSKPYENCLLV-----LLNVQNAKAWNAF--NLSCKILLTTRFKQVTD 279

Query: 300 IEEGALVGLPNLYHLNLKEN--AFTSF-SESMLA-WPELRTIDIAENPIE-CGCN----- 349
                 +      H++L  +    T    +S+L  + + R  D+   P E    N     
Sbjct: 280 F-----LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---PREVLTTNPRRLS 331

Query: 350 ILW--LREMLVR-RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSG 406
           I+   +R+ L    N   V C+     K  ++I  S          L  +    +R +  
Sbjct: 332 IIAESIRDGLATWDNWKHVNCD-----KLTTIIESS----------LNVLEPAEYRKM-- 374

Query: 407 LRSL-VLTDNRLQSIPTKQLSKL---TRLEELEIGQNGF---SMLEAGCFKGLSYLKRLE 459
              L V   +    IPT  LS +       ++ +  N     S++E    +    +    
Sbjct: 375 FDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---- 428

Query: 460 ITGASNLTRVRKGAFADNLNLETLTLNKN-PKL--KIIEEDAL--------VGLPNL--- 505
                            ++ LE     +N   L   I++   +        +  P L   
Sbjct: 429 ----------------PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472

Query: 506 ------YHLNLKENA--FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS 557
                 +HL   E+    T F    L   + R                +L + + R +++
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMVFL---DFR----------------FLEQKI-RHDST 512

Query: 558 AVFCNSPAPL--------KYKSLIS 574
           A   N+   +         YK  I 
Sbjct: 513 A--WNASGSILNTLQQLKFYKPYIC 535

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 61.0 bits (148), Expect = 1e-11
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 6/91 (6%)

Query: 307 GLP-NLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA 364
             P +   L L  N  T+    +L   P LRT  +  NP  C C ++ LR  L  R   A
Sbjct: 28  AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87

Query: 365 ----VFCNSPAPLKYKSLISLSAEDLGCAGA 391
               + C +P  L+ + L  L+ ++L  A A
Sbjct: 88  PYRDLRCVAPPALRGRLLPYLAEDELRAACA 118

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 501 GLP-NLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSA 558
             P +   L L  N  T+    +L   P LRT  +  NP  C C ++ LR  L  R   A
Sbjct: 28  AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA 87

Query: 559 ----VFCNSPAPLKYKSLISLSAEDL 580
               + C +P  L+ + L  L+ ++L
Sbjct: 88  PYRDLRCVAPPALRGRLLPYLAEDEL 113

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 8/71 (11%)

Query: 388 CAGAGLTNISDNAFRGL-SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA 446
           C   GLT  S             LVLT N L ++P   L  L  L    +G N +     
Sbjct: 15  CGRRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW----- 67

Query: 447 GCFKGLSYLKR 457
            C   L  L+ 
Sbjct: 68  RCDCRLVPLRA 78

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.0 bits (91), Expect = 8e-04
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 211 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR 263
                LVLT N L ++P   L  L  L    +G N +      C   L  L+ 
Sbjct: 31  VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW-----RCDCRLVPLRA 78

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.8 bits (150), Expect = 1e-10
 Identities = 43/293 (14%), Positives = 91/293 (31%), Gaps = 25/293 (8%)

Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
           C    S  K    +  + L       +    +LE L    + +    +   ++   +L  
Sbjct: 13  CSCNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKR 72

Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT-SAVFCNSPAP 372
           L ++     S          LR + I+            L+E+ +     +         
Sbjct: 73  LTVRAARIPSRILFGA----LRVLGISG-----------LQELTLENLEVTGTAPPPLLE 117

Query: 373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE 432
                L  L+  ++  A      +++       GL+ L +      +   +Q+     L 
Sbjct: 118 ATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALS 176

Query: 433 ELEIGQNGFS----MLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADNLNLETLTLN 486
            L++  N       ++ A C      L+ L +  A     + V     A  + L+ L L+
Sbjct: 177 TLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS 236

Query: 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
            N         +      L  LNL         + +    +L  +D++ N ++
Sbjct: 237 HNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 60.7 bits (147), Expect = 3e-10
 Identities = 41/231 (17%), Positives = 77/231 (33%), Gaps = 22/231 (9%)

Query: 135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDL 194
            +    ++ L L    +R+   PS I  G L  L +      TL +    G      L+ 
Sbjct: 59  GQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118

Query: 195 RGAGLT--NISDNAFRGL------------SGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
            G  L   N+ + ++                GL+ L +      +   +Q+     L  L
Sbjct: 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTL 178

Query: 241 EIGQNGFS----MLEAGCFKGLSYLKRLEITGAS--NLTRVRKGAFADNLNLETLTLNKN 294
           ++  N       ++ A C      L+ L +  A     + V     A  + L+ L L+ N
Sbjct: 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238

Query: 295 PKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
                    +      L  LNL         + +    +L  +D++ N ++
Sbjct: 239 SLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLD 287

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 59.5 bits (144), Expect = 8e-10
 Identities = 35/229 (15%), Positives = 67/229 (29%), Gaps = 33/229 (14%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIP-----IYLSLQHVDLSHTTWLI 82
           +  +       +   + P +  L L      T D+ +      +   L+ + ++    L 
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN 163

Query: 83  IPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALR 142
                      L  L L+ N                           I   C      L+
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPE-------------------LGERGLISALCPLKFPTLQ 204

Query: 143 ILYLDDNQLRSVPTP---SFIYLGMLAELRVGLNVFTTL-ADGAFNGLGRLSALDLRGAG 198
           +L L +  + +              L  L +  N         + +   +L++L+L   G
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264

Query: 199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF 247
           L  +        + L  L L+ NRL   P     +L ++  L +  N F
Sbjct: 265 LKQVPKGLP---AKLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 6e-08
 Identities = 48/288 (16%), Positives = 84/288 (29%), Gaps = 58/288 (20%)

Query: 46  SIQRLVLSTNRIKTVDSAIPI----YLSLQHVDLS--HTTWLIIPIGGFEPQEKLVELQL 99
           S++RL +   RI +      +       LQ + L     T    P         L  L L
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 100 NHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF 159
            +                        R + + +        L++L +      +      
Sbjct: 129 RNVSW-------------------ATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169

Query: 160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLT 219
                L+ L +  N                            IS         L+ L L 
Sbjct: 170 RVFPALSTLDLSDNPELG--------------------ERGLISALCPLKFPTLQVLALR 209

Query: 220 DNRLQSIP---TKQLSKLTRLEELEIGQNGFS-MLEAGCFKGLSYLKRLEITGASN-LTR 274
           +  +++     +   +   +L+ L++  N       A      S L  L +  +   L +
Sbjct: 210 NAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL--SFTGLKQ 267

Query: 275 VRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT 322
           V KG  A    L  L L+ N +L      +   LP + +L+LK N F 
Sbjct: 268 VPKGLPA---KLSVLDLSYN-RLDRNP--SPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 52/317 (16%), Positives = 92/317 (29%), Gaps = 58/317 (18%)

Query: 209 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 268
           G S    L   D          + K   L+ L +               +  +  L+   
Sbjct: 42  GRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELT 101

Query: 269 ASNLTRVRKG----AFADNLNLETLTLNKN---PKLKTIEEGALVGLPNLYHLNLKENAF 321
             NL            A   +L  L L       +   + E      P L  L++ +   
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS 161

Query: 322 TSFSESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
            +FS   +   P L T+D+++NP                        ++  PLK+ +L  
Sbjct: 162 LNFSCEQVRVFPALSTLDLSDNPE----------------LGERGLISALCPLKFPTLQV 205

Query: 381 LSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQN 439
           L+  + G      + +          L+ L L+ N L+           ++L  L +   
Sbjct: 206 LALRNAG--METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 440 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDAL 499
           G   +  G                                L  L L+ N   ++    + 
Sbjct: 264 GLKQVPKGLPA----------------------------KLSVLDLSYN---RLDRNPSP 292

Query: 500 VGLPNLYHLNLKENAFT 516
             LP + +L+LK N F 
Sbjct: 293 DELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 54/270 (20%), Positives = 92/270 (34%), Gaps = 46/270 (17%)

Query: 188 RLSALDLRGAGLTNISDN---AFRGLSGLRSLVLTDNRLQSIPTKQLSKLT--RLEELEI 242
            L  L +R A + +          G+SGL+ L L +  +       L + T   L  L +
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 243 GQNGFSMLEAGCFKGLSY----LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK 298
               ++  +A   +   +    LK L I   ++              L TL L+ NP+L 
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 299 TI---EEGALVGLPNLYHLNLKENAFTSFSESMLAW----PELRTIDIAENPIECGCNIL 351
                     +  P L  L L+     + S    A      +L+ +D++ N +       
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL------- 240

Query: 352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLV 411
                  R    A  C+ P+ L   +L          +  GL  +        + L  L 
Sbjct: 241 -------RDAAGAPSCDWPSQLNSLNL----------SFTGLKQVPKGLP---AKLSVLD 280

Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGF 441
           L+ NRL   P     +L ++  L +  N F
Sbjct: 281 LSYNRLDRNP--SPDELPQVGNLSLKGNPF 308

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 43/326 (13%), Positives = 93/326 (28%), Gaps = 83/326 (25%)

Query: 176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT 235
            ++   AF     ++ + L   GL +I D AF   S ++ +V     L+ +         
Sbjct: 125 KSIPKDAFRNSQ-IAKVVL-NEGLKSIGDMAFFN-STVQEIVFPST-LEQLKEDIFYYCY 180

Query: 236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP 295
            L++ ++ +   + L A  F     ++ + +     L  +   AF     L+T+ + +N 
Sbjct: 181 NLKKADLSKTKITKLPASTFVYAG-IEEVLLP--VTLKEIGSQAFLKTSQLKTIEIPEN- 236

Query: 296 KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE------CGCN 349
            + TI + A                   F ES      + T+ +              C 
Sbjct: 237 -VSTIGQEA-------------------FRES-----GITTVKLPNGVTNIASRAFYYCP 271

Query: 350 ILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAG-------AGLTNISDNAFR 402
            L                 S      +++I       GC           +  +      
Sbjct: 272 EL----------AEVTTYGSTFNDDPEAMIHPYC-LEGCPKLARFEIPESIRILGQGLLG 320

Query: 403 GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITG 462
           G   +  L +  N +  I                            F   + +K +++ G
Sbjct: 321 GNRKVTQLTIPAN-VTQI------------------------NFSAFNN-TGIKEVKVEG 354

Query: 463 ASNLTRVRKGAFADNLNLETLTLNKN 488
            +      K  +    ++  + +   
Sbjct: 355 TTPPQVFEKVWYGFPDDITVIRVPAE 380

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Length = 401

 Score = 47.8 bits (114), Expect = 6e-06
 Identities = 22/122 (18%), Positives = 47/122 (38%), Gaps = 7/122 (5%)

Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
            L  + ++ F     L+   L+  ++  +P         +EE+ +       + +  F  
Sbjct: 167 TLEQLKEDIFYYCYNLKKADLSKTKITKLP-ASTFVYAGIEEVLLP-VTLKEIGSQAFLK 224

Query: 452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK 511
            S LK +EI    N++ + + AF ++  + T+ L     +  I   A    P L  +   
Sbjct: 225 TSQLKTIEI--PENVSTIGQEAFRES-GITTVKLPNG--VTNIASRAFYYCPELAEVTTY 279

Query: 512 EN 513
            +
Sbjct: 280 GS 281

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 56.7 bits (137), Expect = 6e-09
 Identities = 42/290 (14%), Positives = 81/290 (27%), Gaps = 55/290 (18%)

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
             +N+ +   +G   L  ++L++  +++I          L+  +I +     L       
Sbjct: 88  AFSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD 146

Query: 258 ---LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHL 314
                ++            R    AF +   LET        +  +E+  +        +
Sbjct: 147 SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPRDI 204

Query: 315 NLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 374
           N                      +     I      L           S     +     
Sbjct: 205 NFLTIEGKLD-------------NADFKLIRDYMPNL----------VSLDISKT----- 236

Query: 375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE-E 433
                              T I D  F     L  + L  N L++I  +  S   RL   
Sbjct: 237 -----------------NATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278

Query: 434 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 483
           LE+     + +E G F G   L+ +  TG   +T +    F + +  + +
Sbjct: 279 LELP-ASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 40/274 (14%), Positives = 78/274 (28%), Gaps = 34/274 (12%)

Query: 229 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLET 288
             L  L  +   EI             K   Y+       A   + V  G       LE 
Sbjct: 49  PSLKVLD-ISNAEIKMYSGKAGTYPNGKFYIYMA--NFVPAYAFSNVVNGVTKGKQTLEK 105

Query: 289 LTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGC 348
           + L++   +K IE+ A  G  NL    +++                    +     E   
Sbjct: 106 VILSEK--IKNIEDAAFKGCDNLKICQIRKK--------------TAPNLLP----EALA 145

Query: 349 NILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLR 408
           + +    + +  + +  F N      +     L           +  + D   +     R
Sbjct: 146 DSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQ---VGAMGKLEDEIMKAGLQPR 202

Query: 409 SLVLTDNRLQSIPTK----QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS 464
            +         +           +  L  L+I +   + +    F    YL ++++    
Sbjct: 203 DINFLTI-EGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP--H 259

Query: 465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDA 498
           NL  + +  F++   L   TL     +  IE  A
Sbjct: 260 NLKTIGQRVFSNCGRL-AGTLELPASVTAIEFGA 292

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 39/257 (15%), Positives = 76/257 (29%), Gaps = 44/257 (17%)

Query: 175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT----KQ 230
           F+ + +G   G   L  + L    + NI D AF+G   L+   +      ++        
Sbjct: 89  FSNVVNGVTKGKQTLEKVIL-SEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADS 147

Query: 231 LSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT 290
           ++ +             +  E   F     L+         + ++        L    + 
Sbjct: 148 VTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE--TTIQVGAMGKLEDEIMKAGLQPRDIN 205

Query: 291 LNKNPKLKTIEEGA----LVGLPNLYHLNLKENAFTSFSESMLAW-PELRTIDIAENPIE 345
                    ++          +PNL  L++ +   T+  +   A    L  I +  N   
Sbjct: 206 FLTIEG--KLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKT 263

Query: 346 CGCNILWLREMLVRRNTSAVF--CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRG 403
            G                 VF  C     L     +           A +T I   AF G
Sbjct: 264 IGQR---------------VFSNCGR---LAGTLEL----------PASVTAIEFGAFMG 295

Query: 404 LSGLRSLVLTDNRLQSI 420
              LR ++ T +++ ++
Sbjct: 296 CDNLRYVLATGDKITTL 312

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 46.7 bits (111), Expect = 1e-05
 Identities = 32/170 (18%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
              +R +   F     L         +  +            ++   L +   L +  F 
Sbjct: 162 RFKNRWEHFAFIEGEPLETTIQVGA-MGKLEDEIMKAGLQPRDINF-LTIEGKLDNADFK 219

Query: 185 GLGR----LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE-E 239
            +      L +LD+     T I D  F     L  + L  N L++I  +  S   RL   
Sbjct: 220 LIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278

Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 289
           LE+     + +E G F G   L+ +  TG   +T +    F + +  + +
Sbjct: 279 LELP-ASVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Length = 329

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 23/158 (14%), Positives = 51/158 (32%), Gaps = 16/158 (10%)

Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 451
             +N+ +   +G   L  ++L++  +++I          L+  +I +     L       
Sbjct: 88  AFSNVVNGVTKGKQTLEKVILSEK-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALAD 146

Query: 452 ---LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL 508
                ++            R    AF +   LET        +  +E++ +        +
Sbjct: 147 SVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGA--MGKLEDEIMKAGLQPRDI 204

Query: 509 N-------LKENAFTSFSESMLAWPELRTIDIAENPIE 539
           N       L    F    + M   P L ++DI++    
Sbjct: 205 NFLTIEGKLDNADFKLIRDYM---PNLVSLDISKTNAT 239

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 54.5 bits (132), Expect = 6e-09
 Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 16/116 (13%)

Query: 380 SLSAEDLGCAGAGLT----NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
           S S   + C+G  L      I           + L L DN++  +      +LT+L  L+
Sbjct: 8   SCSGTTVDCSGKSLASVPTGIPTTT-------QVLYLYDNQITKLEPGVFDRLTQLTRLD 60

Query: 436 IGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNP 489
           +  N  ++L AG F  L+ L +L +    N L  + +GAF DNL +L  + L  NP
Sbjct: 61  LDNNQLTVLPAGVFDKLTQLTQLSLN--DNQLKSIPRGAF-DNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 5/84 (5%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
           + L L DN++  +      +LT+L  L++  N  ++L AG F  L+ L +L +    N L
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN--DNQL 90

Query: 273 TRVRKGAFADNL-NLETLTLNKNP 295
             + +GAF DNL +L  + L  NP
Sbjct: 91  KSIPRGAF-DNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 28/83 (33%), Positives = 39/83 (46%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
           T  ++LYL DNQ+  +    F  L  L  L +  N  T L  G F+ L +L+ L L    
Sbjct: 30  TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89

Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
           L +I   AF  L  L  + L +N
Sbjct: 90  LKSIPRGAFDNLKSLTHIWLLNN 112

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 46.8 bits (112), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N+I++++   F+ LT L  L LD+NQL  +P   F  L  L +L +  N   ++  GAF+
Sbjct: 40  NQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99

Query: 185 GLGRLSALDLRG 196
            L  L+ + L  
Sbjct: 100 NLKSLTHIWLLN 111

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 12/100 (12%)

Query: 144 LYLDDNQLRSVPTPSFIYLGMLA---ELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
           +      L SVPT      G+      L +  N  T L  G F+ L +L+ LDL    LT
Sbjct: 14  VDCSGKSLASVPT------GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT 67

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPT---KQLSKLTRL 237
            +    F  L+ L  L L DN+L+SIP      L  LT +
Sbjct: 68  VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHI 107

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 380 SLSAEDLGCAGAGLT----NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE 435
           S     + C    L      I  +        + L L +N++  +       L  L++L 
Sbjct: 11  SCDQTLVNCQNIRLASVPAGIPTDK-------QRLWLNNNQITKLEPGVFDHLVNLQQLY 63

Query: 436 IGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGAFADNL-NLETLTLNKNP 489
              N  + +  G F  L+ L +L++    N L  + +GAF DNL +L  + L  NP
Sbjct: 64  FNSNKLTAIPTGVFDKLTQLTQLDLN--DNHLKSIPRGAF-DNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.9 bits (125), Expect = 5e-08
 Identities = 26/83 (31%), Positives = 41/83 (49%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG 198
           T  + L+L++NQ+  +    F +L  L +L    N  T +  G F+ L +L+ LDL    
Sbjct: 33  TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92

Query: 199 LTNISDNAFRGLSGLRSLVLTDN 221
           L +I   AF  L  L  + L +N
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNN 115

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-L 272
           + L L +N++  +       L  L++L    N  + +  G F  L+ L +L++    N L
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN--DNHL 93

Query: 273 TRVRKGAFADNL-NLETLTLNKNP 295
             + +GAF DNL +L  + L  NP
Sbjct: 94  KSIPRGAF-DNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 22/72 (30%), Positives = 40/72 (55%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
           N+I++++   F+ L  L+ LY + N+L ++PT  F  L  L +L +  N   ++  GAF+
Sbjct: 43  NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFD 102

Query: 185 GLGRLSALDLRG 196
            L  L+ + L  
Sbjct: 103 NLKSLTHIYLYN 114

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 37/101 (36%), Positives = 47/101 (46%), Gaps = 9/101 (8%)

Query: 221 NRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN-LTRVRKGA 279
            RL S+P       T  + L +  N  + LE G F  L  L++L     SN LT +  G 
Sbjct: 22  IRLASVPA---GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYF--NSNKLTAIPTGV 76

Query: 280 FADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
           F D L  L  L LN N  LK+I  GA   L +L H+ L  N
Sbjct: 77  F-DKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHIYLYNN 115

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 218 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 277
           LT   ++     Q +   R  EL++      ++E      L     ++ +  + + ++  
Sbjct: 4   LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSD-NEIRKLDG 59

Query: 278 GAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE--SMLAWPELR 335
             F     L+TL +N N ++  I EG    LP+L  L L  N+     +   + +   L 
Sbjct: 60  --FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 336 TIDIAENPI 344
            + I  NP+
Sbjct: 117 YLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 9/129 (6%)

Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 471
           LT   ++     Q +   R  EL++      ++E      L     ++ +  + + ++  
Sbjct: 4   LTAELIEQAA--QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSD-NEIRKLDG 59

Query: 472 GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAWPELR 529
             F     L+TL +N N ++  I E     LP+L  L L  N+     +   + +   L 
Sbjct: 60  --FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLT 116

Query: 530 TIDIAENPI 538
            + I  NP+
Sbjct: 117 YLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
             I +  Q  +      R L L   ++  +       L     +    N    L    F 
Sbjct: 7   ELIEQAAQ--YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDG--FP 61

Query: 185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIG 243
            L RL  L +    +  I +   + L  L  L+LT+N L  +     L+ L  L  L I 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 244 QNGFSMLE 251
           +N  +  +
Sbjct: 122 RNPVTNKK 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 28/142 (19%)

Query: 30  NLQEANLDVIPSHSNPSIQR-LVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
            L    ++    ++N    R L L   +I  +++          +D S     I  + GF
Sbjct: 3   KLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN--EIRKLDGF 60

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
               +L  L +N+                       NRI RI +   + L  L  L L +
Sbjct: 61  PLLRRLKTLLVNN-----------------------NRICRIGEGLDQALPDLTELILTN 97

Query: 149 NQLRSVPTPSFIYLGMLAELRV 170
           N L  +       L  L  L  
Sbjct: 98  NSLVELGD--LDPLASLKSLTY 117

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 52.0 bits (125), Expect = 6e-08
 Identities = 35/153 (22%), Positives = 54/153 (35%), Gaps = 9/153 (5%)

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           L      +  + D     L   + L L+ N ++ I    LS +  L  L +G+N    +E
Sbjct: 30  LHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKIE 86

Query: 252 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE-GALVGLPN 310
                    L+ L I  + N      G     +NL  L ++ N K+    E   L  L  
Sbjct: 87  -NLDAVADTLEELWI--SYNQIASLSG-IEKLVNLRVLYMSNN-KITNWGEIDKLAALDK 141

Query: 311 LYHLNLKENAFTSFSESMLAWPELRTIDIAENP 343
           L  L L  N   +  +   A  E R   +   P
Sbjct: 142 LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 36/162 (22%), Positives = 56/162 (34%), Gaps = 9/162 (5%)

Query: 377 SLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
                   +L      +  + D     L   + L L+ N ++ I    LS +  L  L +
Sbjct: 21  VATEAEKVELHGMIPPIEKM-DATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSL 77

Query: 437 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE 496
           G+N    +E         L+ L I  + N      G     +NL  L ++ N K+    E
Sbjct: 78  GRNLIKKIE-NLDAVADTLEELWI--SYNQIASLSG-IEKLVNLRVLYMSNN-KITNWGE 132

Query: 497 -DALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP 537
            D L  L  L  L L  N   +  +   A  E R   +   P
Sbjct: 133 IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLP 174

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 6/111 (5%)

Query: 123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGA 182
             N I +I      G+  LRIL L  N ++ +          L EL +  N   +L+   
Sbjct: 56  STNNIEKISS--LSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWISYNQIASLSG-- 110

Query: 183 FNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
              L  L  L +    +TN  + +    L  L  L+L  N L +   +  +
Sbjct: 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNA 161

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 20/258 (7%)

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
           +   +   E  L  ++        +             + + + Q+  E    L+ L  +
Sbjct: 322 WTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPE 380

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
           +             L  L   +  L  F+TL          L  L  +     ++    +
Sbjct: 381 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEY 440

Query: 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
             +   R L L    L  +    L +L  +  L++  N    L       L+ L+ LE+ 
Sbjct: 441 ADV---RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP----PALAALRCLEVL 491

Query: 268 GASN--LTRVRKGAFADNLNLETLTLNKNPKLKTIEE-GALVGLPNLYHLNLKENAFTSF 324
            AS+  L  V     A+   L+ L L  N +L+       LV  P L  LNL+ N+    
Sbjct: 492 QASDNALENVDG--VANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548

Query: 325 SES----MLAWPELRTID 338
                      P + +I 
Sbjct: 549 EGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 7e-07
 Identities = 25/133 (18%), Positives = 45/133 (33%), Gaps = 33/133 (24%)

Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
           R L L    L  +    L +L  +  L++  N    L       L+ L+           
Sbjct: 444 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALP----PALAALR----------- 486

Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE--SMLAW 525
                       LE L  + N  L+ ++   +  LP L  L L  N     +    +++ 
Sbjct: 487 -----------CLEVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSAAIQPLVSC 532

Query: 526 PELRTIDIAENPI 538
           P L  +++  N +
Sbjct: 533 PRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 2e-04
 Identities = 34/210 (16%), Positives = 55/210 (26%), Gaps = 64/210 (30%)

Query: 35  NLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL 94
            +D + +     ++   L  N +  ++ A    L L H DL+        +   E    +
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-------LCHLEQLLLV 465

Query: 95  VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV 154
             L L+HN                       R+  +       L  L +L   DN L +V
Sbjct: 466 THLDLSHN-----------------------RLRALPP-ALAALRCLEVLQASDNALENV 501

Query: 155 PTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFRGLSGL 213
                                          L RL  L L    L   +          L
Sbjct: 502 D--------------------------GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 214 RSLVLTDNRLQSIP------TKQLSKLTRL 237
             L L  N L           + L  ++ +
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 15/228 (6%)

Query: 312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA 371
           +      N  +      L    L                   +E ++ ++    +C   A
Sbjct: 287 WRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSA 346

Query: 372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL 431
             +      LS E      + L +  +        L+ L   +          +  L  L
Sbjct: 347 TDEQLFRCELSVEKSTVLQSELESCKE--------LQELEPENKWCLLTIILLMRALDPL 398

Query: 432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL 491
              +     FS L+A      +YL  L     S           +  ++  L L      
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLR----SKFLLENSVLKMEYADVRVLHLAHK--- 451

Query: 492 KIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
            +     L  L  + HL+L  N   +   ++ A   L  +  ++N +E
Sbjct: 452 DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE 499

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 41.7 bits (97), Expect = 5e-04
 Identities = 35/238 (14%), Positives = 65/238 (27%), Gaps = 41/238 (17%)

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            +  +       L+ L   +          +  L  L   +     FS L+A      +Y
Sbjct: 362 TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 421

Query: 261 LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA 320
           L  L     S           +  ++  L L     L  +    L  L  + HL+L  N 
Sbjct: 422 LDDLR----SKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNR 474

Query: 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
             +   ++ A   L  +  ++N +E    +                          +L  
Sbjct: 475 LRALPPALAALRCLEVLQASDNALENVDGV-------------------------ANLPR 509

Query: 381 LSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIP------TKQLSKLTRL 431
           L  ++L      L   +          L  L L  N L           + L  ++ +
Sbjct: 510 L--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 402 RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
           R  S ++ LVL ++R      + L  +   LE L     G + +       L  L +L+ 
Sbjct: 14  RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-----NLPKLNKLKK 68

Query: 461 TGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS 517
              S+  ++   +       NL  L L+ N K+K +   + L  L NL  L+L     T+
Sbjct: 69  LELSDNRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCEVTN 127

Query: 518 FS---ESMLAW-PELRTID 532
            +   E++    P+L  +D
Sbjct: 128 LNDYRENVFKLLPQLTYLD 146

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 51.5 bits (123), Expect = 6e-07
 Identities = 61/385 (15%), Positives = 115/385 (29%), Gaps = 46/385 (11%)

Query: 165 LAELRVGLNVFTTLADGAFNGLGR----LSALDLRGAGLTNISDNA----FRGLSGLRSL 216
           +  L +  + F+       + L +    L  L+        IS        R    L S+
Sbjct: 166 IKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR 276
            + D  +  +          LEE   G     +     +  L + ++L   G S +    
Sbjct: 226 KVGDFEILEL-VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNE 284

Query: 277 KGAFADNL-NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA--WPE 333
                     +  L L             +   PNL  L    N        +LA    +
Sbjct: 285 MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLET-RNVIGDRGLEVLAQYCKQ 343

Query: 334 LRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGL 393
           L+ + I     E G         + +R   A+            L  +    +       
Sbjct: 344 LKRLRIERGADEQGMEDEEGL--VSQRGLIALAQGCQ------ELEYM---AVYV----- 387

Query: 394 TNISDNAFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           ++I++ +   +   L++L       + +   +  ++T L       NG   L  GC K  
Sbjct: 388 SDITNESLESIGTYLKNLC----DFRLVLLDREERITDL----PLDNGVRSLLIGCKK-- 437

Query: 453 SYLKRLEITGAS-NLTRVRKGAFADNL-NLETLTLNKNPKLKIIEEDALVGLPNLYHLNL 510
             L+R         LT +          N+  + L    +      +   G PNL  L +
Sbjct: 438 --LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM 495

Query: 511 KENAFTSFSESMLA--WPELRTIDI 533
           +   F+  + +      P LR + +
Sbjct: 496 RGCCFSERAIAAAVTKLPSLRYLWV 520

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 68/368 (18%), Positives = 111/368 (30%), Gaps = 81/368 (22%)

Query: 43  SNPSIQRLVLSTNRI-----KTVDSAIPIYLSLQHVDLSHTTWLIIPIG---------GF 88
           +  SI+   L  + I     K+V + +    S++ + LS  T     IG           
Sbjct: 2   ARFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-----IGTEAARWLSENI 56

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
             ++ L   + +                +         + +           L  + L D
Sbjct: 57  ASKKDLEIAEFSDI---------FTGRVKDEIPEALRLLLQ----ALLKCPKLHTVRLSD 103

Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLA--DGAFNGLGRLSALDLRGAGLTNISDNA 206
           N                  L   L+  T L       NGLG  +   +  A      +  
Sbjct: 104 NAFGPT--------AQEP-LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 207 FRGLSGLRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQN-----GFSMLEAGCFKG 257
            +    LRS++   NRL++   K+ +K       L  +++ QN     G   L       
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 258 LSYLKRLEI-------TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA------ 304
              LK L++        G+S L      A     NL  L LN    L     GA      
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAI----ALKSWPNLRELGLNDC-LLSA--RGAAAVVDA 267

Query: 305 LVGLPN--LYHLNLKENAFTSFSESMLA------WPELRTIDIAENPI-ECGCNILWLRE 355
              L N  L  L L+ N     +   L        P+L  +++  N   E    +  +RE
Sbjct: 268 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE 327

Query: 356 MLVRRNTS 363
           +   R   
Sbjct: 328 VFSTRGRG 335

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 61/334 (18%), Positives = 109/334 (32%), Gaps = 80/334 (23%)

Query: 279 AFADNLNLETLTLNKNPKLKTI-EEGA------LVGLPNLYHLNLKEN-----------A 320
              ++ +++ + L+ N    TI  E A      +    +L      +            A
Sbjct: 27  VLLEDDSVKEIVLSGN----TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA 82

Query: 321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS 380
                +++L  P+L T+ +++N          L + L  ++T          L++   + 
Sbjct: 83  LRLLLQALLKCPKLHTVRLSDNAFGPTA-QEPLIDFL-SKHTP---------LEH---LY 128

Query: 381 LSAEDLGCAGAG------LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL----TR 430
           L    LG                +   +    LRS++   NRL++   K+ +K       
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 188

Query: 431 LEELEIGQN-----GFSMLEAGCFKGLSYLKRLEI-------TGASNLTRVRKGAFADNL 478
           L  +++ QN     G   L          LK L++        G+S L      A     
Sbjct: 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSWP 244

Query: 479 NLETLTLNKNPKLKIIEE------DALVGLPN--LYHLNLKENAFTSFSESMLA------ 524
           NL  L LN      +         DA   L N  L  L L+ N     +   L       
Sbjct: 245 NLRELGLNDC---LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301

Query: 525 WPELRTIDIAENPI-ECGCNILWLREMLVRRNTS 557
            P+L  +++  N   E    +  +RE+   R   
Sbjct: 302 MPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRG 335

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 46/297 (15%), Positives = 85/297 (28%), Gaps = 71/297 (23%)

Query: 42  HSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH 101
              P +  + LS N      +  P+   L      HT               L  L L++
Sbjct: 91  LKCPKLHTVRLSDNAF-GPTAQEPLIDFLS----KHTP--------------LEHLYLHN 131

Query: 102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIY 161
           N           + P+      +           +    LR +    N+L +        
Sbjct: 132 NG----------LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENG------- 174

Query: 162 LGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN 221
             M             L       + ++    +R  G+ ++          L+ L L DN
Sbjct: 175 -SMKE-WAKTFQSHRLLHT-----V-KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226

Query: 222 RLQSIPTKQLSK----LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK 277
               + +  L+        L EL +                     L   GA+ +     
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDC-----------------LLSARGAAAVVDAFS 269

Query: 278 GAFADNLNLETLTLNKNP----KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA 330
               +N+ L+TL L  N      ++T++      +P+L  L L  N F+   + +  
Sbjct: 270 K--LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 34/139 (24%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 402 RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
           R  + +R LVL + +      + L ++   LE L +   G   +       L  L +L+ 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKK 75

Query: 461 TGASN--LTRVRKGAFADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS 517
              S   +            NL  L L+ N KLK I   + L  L  L  L+L     T+
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134

Query: 518 FS---ESMLAW-PELRTID 532
            +   ES+    P+L  +D
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 46.7 bits (111), Expect = 3e-06
 Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 14/139 (10%)

Query: 208 RGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 266
           R  + +R LVL + +      + L ++   LE L +   G   +       L  L +L+ 
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS-----NLPKLPKLKK 75

Query: 267 TGASN--LTRVRKGAFADNLNLETLTLNKNPKLKTIEE-GALVGLPNLYHLNLKENAFTS 323
              S   +            NL  L L+ N KLK I     L  L  L  L+L     T+
Sbjct: 76  LELSENRIFGGLDMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134

Query: 324 FS---ESMLAW-PELRTID 338
            +   ES+    P+L  +D
Sbjct: 135 LNDYRESVFKLLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 28/123 (22%)

Query: 124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF 183
           ++   +I+         L  L L +  L SV                             
Sbjct: 35  KSNDGKIEGLT-AEFVNLEFLSLINVGLISVSN--------------------------L 67

Query: 184 NGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEI 242
             L +L  L+L    +    D     L  L  L L+ N+L+ I T + L KL  L+ L++
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDL 127

Query: 243 GQN 245
              
Sbjct: 128 FNC 130

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 89/473 (18%), Positives = 135/473 (28%), Gaps = 113/473 (23%)

Query: 136 EGLTALRILYLDDNQLRSVPTPSF----IYLGMLAELRVGLNVFT-----TLADGAFNGL 186
             L   +++ LDD  L                 LAEL +  N         +  G     
Sbjct: 25  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84

Query: 187 GRLSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-----TRL 237
            ++  L L+   LT        +  R L  L+ L L+DN L     + L +       RL
Sbjct: 85  CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRL 144

Query: 238 EELEIGQNGFSMLEAGC------FKGLSYLKRLEI-------TGASNLTRVRKGAFADNL 284
           E+L++     S   A C       +     K L +        G   L +  K +     
Sbjct: 145 EKLQLEYCSLS--AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDS---PC 199

Query: 285 NLETLTLNKNPKLKTIEEG------ALVGLPNLYHLNLKENAFTSFSESMLAW------P 332
            LE L L          +        +    +L  L L  N       + L         
Sbjct: 200 QLEALKLESC---GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS 256

Query: 333 ELRTIDIAENPI-ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSL--ISLSAEDLGCA 389
            LRT+ I E  I   GC  L             +          +SL  +SL+  +LG  
Sbjct: 257 RLRTLWIWECGITAKGCGDL----------CRVLRAK-------ESLKELSLAGNELGDE 299

Query: 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL----TRLEELEIGQNGFSMLE 445
           GA L  + +        L SL +      +      S +      L EL+I  N      
Sbjct: 300 GARL--LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN------ 351

Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE------DAL 499
                      RLE  G   L +           L  L L       + +         L
Sbjct: 352 -----------RLEDAGVRELCQGLGQP---GSVLRVLWLADC---DVSDSSCSSLAATL 394

Query: 500 VGLPNLYHLNLKENAFTSFSESMLA------WPELRTIDIAENPI-ECGCNIL 545
           +   +L  L+L  N         L          L  + + +    E   + L
Sbjct: 395 LANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 88/531 (16%), Positives = 157/531 (29%), Gaps = 153/531 (28%)

Query: 28  SCNLQEANLDVIPS--HSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPI 85
            C L EA    I S    NP++  L L +N +        +   LQ              
Sbjct: 37  DCGLTEARCKDISSALRVNPALAELNLRSNEL-GDVGVHCVLQGLQT------------- 82

Query: 86  GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY 145
               P  K+ +L L +            ++     +                L  L+ L+
Sbjct: 83  ----PSCKIQKLSLQNCC----------LTGAGCGVLSS---------TLRTLPTLQELH 119

Query: 146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD- 204
           L DN L                   G      L +G  +   RL  L L    L+  S  
Sbjct: 120 LSDNLL-------------------GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE 160

Query: 205 ---NAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-----TRLEELEIGQNGFSMLEAGCFK 256
              +  R     + L +++N +     + L +       +LE L++   G +     C +
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT--SDNC-R 217

Query: 257 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP----KLKTIEEGALVGLPNLY 312
            L                   G  A   +L  L L  N      +  +  G L     L 
Sbjct: 218 DLC------------------GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR 259

Query: 313 HLNLKENAFTS-----FSESMLAWPELRTIDIAENPIEC-GCNILWLREMLVRRNTSAVF 366
            L + E   T+         + A   L+ + +A N +   G  +L   E L+        
Sbjct: 260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC--ETLLEPGCQ--- 314

Query: 367 CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 426
                 L+    + + +     A    ++ S +       L  L +++NRL+    ++L 
Sbjct: 315 ------LES---LWVKSCSFTAACC--SHFS-SVLAQNRFLLELQISNNRLEDAGVRELC 362

Query: 427 KL-----TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE 481
           +      + L  L +     S  ++ C   L+                       N +L 
Sbjct: 363 QGLGQPGSVLRVLWLADCDVS--DSSC-SSLAA------------------TLLANHSLR 401

Query: 482 TLTLNKNPKLKIIEEDALVGL--------PNLYHLNLKENAFTSFSESMLA 524
            L L+ N     + +  ++ L          L  L L +  ++   E  L 
Sbjct: 402 ELDLSNNC----LGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQ 448

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 58/292 (19%), Positives = 95/292 (32%), Gaps = 92/292 (31%)

Query: 185 GLGRLSALDLRGAGLT---NISDNAFRGLSGLRSLVLTD-NRLQ-SIPTKQLSKLTRLEE 239
              R++ LDL G  L     I   +   L  L  L +   N L   IP   ++KLT+L  
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHY 105

Query: 240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGA-----SNLTRVRKGAFADNLNLETLTLNKN 294
           L I     S                   GA     S +             L TL  + N
Sbjct: 106 LYITHTNVS-------------------GAIPDFLSQIK-----------TLVTLDFSYN 135

Query: 295 PKLKTIEEG----ALVGLPNLYHLNLKENAFT-SFSESMLAWPELRT-IDIAEN------ 342
             L     G    ++  LPNL  +    N  + +  +S  ++ +L T + I+ N      
Sbjct: 136 -AL----SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 343 PIECG-CNILWLREMLVRRNTSAVFCNS---PAPLKYKSLISLSAEDLGCAGAGLTNISD 398
           P      N+ ++           +  N     A + + S  +     L          + 
Sbjct: 191 PPTFANLNLAFVD----------LSRNMLEGDASVLFGSDKNTQKIHL----------AK 230

Query: 399 NAFRG-------LSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFS 442
           N+             L  L L +NR+  ++P + L++L  L  L +  N   
Sbjct: 231 NSLAFDLGKVGLSKNLNGLDLRNNRIYGTLP-QGLTQLKFLHSLNVSFNNLC 281

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 73/513 (14%), Positives = 139/513 (27%), Gaps = 75/513 (14%)

Query: 7   QELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPI 66
           +++         P+    R P   ++   L   P  ++ ++            +++    
Sbjct: 46  RKVFIGNCYAVSPATVIRRFP--KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103

Query: 67  YLSLQHVDLSHTTW----LIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF 122
           Y  L+ + L         L +    F   +    L L+          C   S   +   
Sbjct: 104 YTWLEEIRLKRMVVTDDCLELIAKSF---KNFKVLVLSS---------CEGFSTDGLAAI 151

Query: 123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV---FTTLA 179
                             L+ L L ++ +  V      +        V LN+    + ++
Sbjct: 152 AAT------------CRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVS 199

Query: 180 DGAFNGLGR----LSALDLRGAGLTNISDNAFRGLSGLRSLVL------TDNRLQSIPTK 229
             A   L      L +L L  A          +    L  L            + S  + 
Sbjct: 200 FSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259

Query: 230 QLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL 289
            LS    L  L    +         +   S L  L ++ A+  +            L+ L
Sbjct: 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRL 319

Query: 290 TLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN 349
            +    +   +E  A     +L  L +        SE  +  P +   +     +  GC 
Sbjct: 320 WVLDYIEDAGLEVLAS-TCKDLRELRV------FPSEPFVMEPNVALTEQGLVSVSMGCP 372

Query: 350 ILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF----RG 403
              L  +L      T+A            +   L   +            D  F      
Sbjct: 373 --KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430

Query: 404 LSGLRSLVL----TDNRLQSIPTKQLSKLTRLEEL-----EIGQNGFSMLEAGCFKGLSY 454
              LR L L    TD   + I     +   ++E L          G   + +GC      
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYI----GTYAKKMEMLSVAFAGDSDLGMHHVLSGC----DS 482

Query: 455 LKRLEITGASNLTRVRKGAFADNLNLETLTLNK 487
           L++LEI       +      +    + +L ++ 
Sbjct: 483 LRKLEIRDCPFGDKALLANASKLETMRSLWMSS 515

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	581
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.98
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.98
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.98
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.97
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.95
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.94
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.94
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.92
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.92
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.92
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.91
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.9
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.89
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.88
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.88
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.87
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.87
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.87
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.85
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.85
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.84
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.78
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.77
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.76
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.75
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.74
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.71
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.71
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.69
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.66
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.63
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.62
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.58
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.58
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.37
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	99.36
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.22
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.0
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.98
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.47
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	98.45
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.44
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.24
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.69
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.57
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.79
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.67
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	91.81
2lz0_A	100	Uncharacterized protein; hypothetical leucine rich	87.47

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.3e-55  Score=471.45  Aligned_cols=533  Identities=22%  Similarity=0.310  Sum_probs=437.1

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      +.|+..|.|.. ..+.+.|  .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|.++.+.+.+|.
T Consensus         2 ~~~~~~C~~~~-~~~~~~c--~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~   78 (606)
T 3t6q_A            2 TSSDQKCIEKE-VNKTYNC--ENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQ   78 (606)
T ss_dssp             ----CCCEEEE-TTTEEEC--TTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTT
T ss_pred             ccccCceeccc-CCceEEC--CCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhcc
Confidence            57888999875 4467899  999999999999999999999999999884 5899999999999999999999889999


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE  167 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  167 (581)
                      ++++|++|++++|.+. .-.+..+...++|+  +++.|.++.+.+..++++++|++|++++|.+..++...+..+++|++
T Consensus        79 ~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  157 (606)
T 3t6q_A           79 SQHRLDTLVLTANPLI-FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKV  157 (606)
T ss_dssp             TCTTCCEEECTTCCCS-EECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCE
T ss_pred             CccccCeeeCCCCccc-ccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCE
Confidence            9999999999999862 22223445567777  77889999988888999999999999999999876556666999999


Q ss_pred             EECCCCcceeccCCcCCCCCCCc--EEEcCCCCccccCccccCCC-----------------------------------
Q psy8551         168 LRVGLNVFTTLADGAFNGLGRLS--ALDLRGAGLTNISDNAFRGL-----------------------------------  210 (581)
Q Consensus       168 L~L~~n~~~~~~~~~l~~l~~L~--~L~L~~~~l~~~~~~~l~~~-----------------------------------  210 (581)
                      |++++|.++++.+..+..+++|+  .|++++|.++.+.+..+...                                   
T Consensus       158 L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~  237 (606)
T 3t6q_A          158 LDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFED  237 (606)
T ss_dssp             EECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTT
T ss_pred             EEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhcc
Confidence            99999999988777788888888  88999998887665443321                                   


Q ss_pred             ----------------CCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCcee
Q psy8551         211 ----------------SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR  274 (581)
Q Consensus       211 ----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  274 (581)
                                      .+|+.|++++|.++.+++..+..+++|++|++++|.++.++. .+..+++|+.|++.+| .+..
T Consensus       238 ~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~l~~l~~L~~L~l~~n-~l~~  315 (606)
T 3t6q_A          238 MDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS-GLVGLSTLKKLVLSAN-KFEN  315 (606)
T ss_dssp             SCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS-SCCSCTTCCEEECTTC-CCSB
T ss_pred             ccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCCh-hhcccccCCEEECccC-CcCc
Confidence                            167888889999998888889999999999999999886655 4788899999999986 5566


Q ss_pred             ecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccc---cccccCCCCcceEEccCCCCccCCchh
Q psy8551         275 VRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF---SESMLAWPELRTIDIAENPIECGCNIL  351 (581)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~  351 (581)
                      +.+..+..+++|++|++++|...+.++...+..+++|++|++++|.++..   +..+..+++|++|++++|.+....+. 
T Consensus       316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-  394 (606)
T 3t6q_A          316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE-  394 (606)
T ss_dssp             GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT-
T ss_pred             CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH-
Confidence            66677888899999999999655577777788999999999999998866   45677889999999999876422110 


Q ss_pred             hHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCcccc-CccccCCCCCCCEEEcCCCcCCccChhhhcCCCC
Q psy8551         352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNI-SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR  430 (581)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i-~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~  430 (581)
                                            .......+...  ....+.+... ....|.++++|++|++++|.+++..+..+..+++
T Consensus       395 ----------------------~~~~l~~L~~L--~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~  450 (606)
T 3t6q_A          395 ----------------------AFKECPQLELL--DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA  450 (606)
T ss_dssp             ----------------------TTTTCTTCSEE--ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTT
T ss_pred             ----------------------HhcCCccCCeE--ECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCC
Confidence                                  01111222222  2223333333 2345778999999999999999988888999999


Q ss_pred             CcEeecCCCcceee---ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccE
Q psy8551         431 LEELEIGQNGFSML---EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYH  507 (581)
Q Consensus       431 L~~L~l~~~~i~~~---~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~  507 (581)
                      |++|++++|.+.+.   .+..+..+++|++|++++| .++.+.+..|.++++|++|++++| .+..+++..+.++++| +
T Consensus       451 L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~  527 (606)
T 3t6q_A          451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-Y  527 (606)
T ss_dssp             CCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-E
T ss_pred             CCEEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-E
Confidence            99999999998762   3356889999999999984 788888889999999999999999 7777778889999999 9


Q ss_pred             EEcCCCcceeec-cccccCCcceEEecCCCcccccCchhHHHHHHhhc-----CCCceeeCCCcccccccccccCc
Q psy8551         508 LNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLSA  577 (581)
Q Consensus       508 L~l~~n~l~~l~-~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~  577 (581)
                      |++++|.++.++ ..+..+++|++|++++||+.|+|+..||.+|.+..     +...+.|..|..++|+++.+++.
T Consensus       528 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~w~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~  603 (606)
T 3t6q_A          528 LNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTL  603 (606)
T ss_dssp             EECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHHHHHHCGGGEECGGGCBEEESGGGTTCBGGGCCC
T ss_pred             EECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHHHHHhCcccccCCCCCeeCCchHhCCCeeeeeec
Confidence            999999999775 45678899999999999999999999999999874     34556899999999999999875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.3e-53  Score=456.18  Aligned_cols=520  Identities=21%  Similarity=0.250  Sum_probs=386.1

Q ss_pred             CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCccc
Q psy8551          17 YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV   95 (581)
Q Consensus        17 c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~   95 (581)
                      |.|.. ..+++.|  .+.+++.+|..+++++++|+|++|.++.++. .|.++++|++|++++|.++.+++.+|.++++|+
T Consensus         7 c~~~~-~~~~~~c--~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~   83 (606)
T 3vq2_A            7 CIEVV-PNITYQC--MDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS   83 (606)
T ss_dssp             CEEEE-TTTEEEC--TTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred             ceecC-CCCceEc--cCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcC
Confidence            55532 4467999  9999999999999999999999999998876 899999999999999999999888999999999


Q ss_pred             EEeCCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECCC
Q psy8551          96 ELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGL  172 (581)
Q Consensus        96 ~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~  172 (581)
                      +|++++|.+ ..-.+..+..+++|+  +++.|.++.+.+..++++++|++|++++|.+..+. +..+.++++|++|++++
T Consensus        84 ~L~Ls~n~l-~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~  162 (606)
T 3vq2_A           84 NLILTGNPI-QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSY  162 (606)
T ss_dssp             EEECTTCCC-CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred             EeECCCCcc-cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccC
Confidence            999999986 222233455567777  77889999988788999999999999999998633 44789999999999999


Q ss_pred             CcceeccCCcCCCCCCCc----EEEcCCCCccccCccccCCCCCCcEEECCCCcCC------------------------
Q psy8551         173 NVFTTLADGAFNGLGRLS----ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ------------------------  224 (581)
Q Consensus       173 n~~~~~~~~~l~~l~~L~----~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~------------------------  224 (581)
                      |.++++++..+..+++|+    .+++++|.++.+.+..+... +|+.|++++|.++                        
T Consensus       163 n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~  241 (606)
T 3vq2_A          163 NYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF  241 (606)
T ss_dssp             SCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred             CcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence            999988776676665544    78888888887766555443 6777777666542                        


Q ss_pred             ----------------------------------ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC
Q psy8551         225 ----------------------------------SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS  270 (581)
Q Consensus       225 ----------------------------------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  270 (581)
                                                        +..+. +..+++|++|+++++.+..++  .+..+++|+.|++.+|.
T Consensus       242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--~l~~~~~L~~L~l~~n~  318 (606)
T 3vq2_A          242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--DVPKHFKWQSLSIIRCQ  318 (606)
T ss_dssp             TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--CCCTTCCCSEEEEESCC
T ss_pred             ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhhh--hccccccCCEEEccccc
Confidence                                              11111 445567777777777766555  46667777777777764


Q ss_pred             CceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccc---cccccCCCCcceEEccCCCCccC
Q psy8551         271 NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF---SESMLAWPELRTIDIAENPIECG  347 (581)
Q Consensus       271 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~  347 (581)
                      . ..++  .+ .+++|+.|++++|......   .+..+++|+.|++++|.++..   +..+..+++|++|++++|.+...
T Consensus       319 l-~~lp--~~-~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~  391 (606)
T 3vq2_A          319 L-KQFP--TL-DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM  391 (606)
T ss_dssp             C-SSCC--CC-CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE
T ss_pred             C-cccc--cC-CCCccceeeccCCcCccch---hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc
Confidence            3 4444  23 6667777777776434333   355667777777777766654   45556667777777777654321


Q ss_pred             CchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCc-cccCCCCCCCEEEcCCCcCCccChhhhc
Q psy8551         348 CNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLS  426 (581)
Q Consensus       348 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~  426 (581)
                      .                        .....+..+..  +....+.+..+.. ..|.++++|+.|++++|.+++..+..+.
T Consensus       392 ~------------------------~~~~~l~~L~~--L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  445 (606)
T 3vq2_A          392 S------------------------ANFMGLEELQH--LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFL  445 (606)
T ss_dssp             C------------------------CCCTTCTTCCE--EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             h------------------------hhccCCCCCCe--eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhc
Confidence            0                        00011111111  1122223333333 5677899999999999999988888899


Q ss_pred             CCCCCcEeecCCCccee-eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCc
Q psy8551         427 KLTRLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNL  505 (581)
Q Consensus       427 ~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L  505 (581)
                      .+++|++|++++|.+++ ..+..+..+++|++|++++| .++...+..+.++++|++|++++| .+..+.+..+.++++|
T Consensus       446 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L  523 (606)
T 3vq2_A          446 GLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSL  523 (606)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGGTTTCTTC
T ss_pred             CCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCC-cCCCcCHHHccCCCcC
Confidence            99999999999999987 57888999999999999985 788888889999999999999999 6777767889999999


Q ss_pred             cEEEcCCCcceeeccccccCC-cceEEecCCCcccccCchhHHHHHHhhc-----CCCceeeCCCcccccccccccCccc
Q psy8551         506 YHLNLKENAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLSAED  579 (581)
Q Consensus       506 ~~L~l~~n~l~~l~~~~~~~~-~L~~L~l~~np~~c~c~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~~~  579 (581)
                      ++|++++|+++.+|..+..++ +|++|++++||+.|+|+++||.+|.+..     ....+.|..|..++|+++.++++++
T Consensus       524 ~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~~~~  603 (606)
T 3vq2_A          524 STLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTCATPVEMNTSLVLDFNNST  603 (606)
T ss_dssp             CEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHTTTTTSSSSBSSGGGCCCC-----------------
T ss_pred             CEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCccHHHHHHHHcCcccccCCccceeCCChHhCCCEeeeccccc
Confidence            999999999999999888887 5999999999999999999999999774     3345689999999999999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=4e-54  Score=466.16  Aligned_cols=553  Identities=22%  Similarity=0.279  Sum_probs=359.0

Q ss_pred             CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCccc
Q psy8551          17 YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLV   95 (581)
Q Consensus        17 c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~   95 (581)
                      |.|..   ..+.|  ++.+++.||..+++++++|+|++|.++.++. .|.++++|++|++++|.++.+++.+|.++++|+
T Consensus         2 C~~~~---~~~~c--s~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~   76 (680)
T 1ziw_A            2 CTVSH---EVADC--SHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLK   76 (680)
T ss_dssp             --CBS---SEEEC--CSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCC
T ss_pred             ceeEC---CeeEC--CCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcC
Confidence            55554   56889  9999999999999999999999999998875 689999999999999999998888899999999


Q ss_pred             EEeCCCCCC--CCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551          96 ELQLNHNKH--FPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG  171 (581)
Q Consensus        96 ~L~l~~n~~--~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~  171 (581)
                      +|++++|.+  ++...   +..+++|+  +++.|.++.+.+..|+++++|++|++++|.++..+...+..+++|++|+++
T Consensus        77 ~L~L~~n~l~~l~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  153 (680)
T 1ziw_A           77 VLNLQHNELSQLSDKT---FAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS  153 (680)
T ss_dssp             EEECCSSCCCCCCTTT---TTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred             EEECCCCccCccChhh---hccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence            999999876  33333   34446666  667788888888888889999999999988888777677788888888888


Q ss_pred             CCcceeccCCcC--CCCCCCcEEEcCCCCccccCcc--------------------------------------------
Q psy8551         172 LNVFTTLADGAF--NGLGRLSALDLRGAGLTNISDN--------------------------------------------  205 (581)
Q Consensus       172 ~n~~~~~~~~~l--~~l~~L~~L~L~~~~l~~~~~~--------------------------------------------  205 (581)
                      +|.++++++..+  ..+++|+.|++++|.++...+.                                            
T Consensus       154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~  233 (680)
T 1ziw_A          154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ  233 (680)
T ss_dssp             SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred             CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence            887766554332  2345666666666655544433                                            


Q ss_pred             -------ccCCCC--CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC------
Q psy8551         206 -------AFRGLS--GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS------  270 (581)
Q Consensus       206 -------~l~~~~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~------  270 (581)
                             .+..++  +|+.|++++|+++.+++..+..+++|++|++++|.+....+..+..+++|+.+++.++.      
T Consensus       234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~  313 (680)
T 1ziw_A          234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS  313 (680)
T ss_dssp             CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred             ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence                   222222  36666666666666655556666666666666666666655556666666666665432      


Q ss_pred             --CceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCC----------------------------
Q psy8551         271 --NLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENA----------------------------  320 (581)
Q Consensus       271 --~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----------------------------  320 (581)
                        .+..+....+..+++|++|++++| .+..++...|..+++|++|++++|.                            
T Consensus       314 ~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~  392 (680)
T 1ziw_A          314 LASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK  392 (680)
T ss_dssp             ---CCEECTTTTTTCTTCCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC
T ss_pred             cccccccChhhcccCCCCCEEECCCC-ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC
Confidence              112233334555666666666666 4555554455555555555555543                            


Q ss_pred             Cccc-cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceee--cCCCcccccccccCCccccccCCCCccccC
Q psy8551         321 FTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFC--NSPAPLKYKSLISLSAEDLGCAGAGLTNIS  397 (581)
Q Consensus       321 l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~  397 (581)
                      ++.+ +..+..+++|++|++++|.+.+..+...+.............+  ....+..+.....+....+...........
T Consensus       393 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  472 (680)
T 1ziw_A          393 ISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSS  472 (680)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCS
T ss_pred             CCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccC
Confidence            2222 1233444555555555555432111111000000000000000  000000011111222222211111111233


Q ss_pred             ccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeecc--------ccccCCccccEEeecCCCCeeEe
Q psy8551         398 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA--------GCFKGLSYLKRLEITGASNLTRV  469 (581)
Q Consensus       398 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~--------~~~~~~~~L~~L~l~~~~~l~~~  469 (581)
                      ...|.++++|+.|++++|.++++++..+..+++|++|++++|.++.+..        ..+..+++|++|++++ +.++.+
T Consensus       473 p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~i  551 (680)
T 1ziw_A          473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES-NGFDEI  551 (680)
T ss_dssp             SCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS-SCCCCC
T ss_pred             CcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC-CCCCCC
Confidence            4567788999999999999999988889999999999999999887533        2378899999999998 577788


Q ss_pred             cCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecccc-c-cCCcceEEecCCCcccccCch-hH
Q psy8551         470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-L-AWPELRTIDIAENPIECGCNI-LW  546 (581)
Q Consensus       470 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~-~~~~L~~L~l~~np~~c~c~~-~~  546 (581)
                      +...|.++++|++|++++| .++.+++..+.++++|++|++++|+++.++... . .+++|+++++++|||.|+|+. +|
T Consensus       552 ~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~  630 (680)
T 1ziw_A          552 PVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW  630 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred             CHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHH
Confidence            8888999999999999999 888998888999999999999999999887653 3 689999999999999999996 99


Q ss_pred             HHHHHhhcC------CCceeeCCCcccccccccccCcccc
Q psy8551         547 LREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       547 ~~~~~~~~~------~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      |.+|.....      ...++|+.|..++|+++.++++++.
T Consensus       631 ~~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~~~  670 (680)
T 1ziw_A          631 FVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSC  670 (680)
T ss_dssp             EECCSSCC--------------------------------
T ss_pred             HHHHHHhcCcccccccCCcEECCchHHCCCcccccChhhc
Confidence            999986642      3467899999999999999998865

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=4e-49  Score=424.51  Aligned_cols=525  Identities=19%  Similarity=0.227  Sum_probs=335.8

Q ss_pred             hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCC
Q psy8551          10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF   88 (581)
Q Consensus        10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~   88 (581)
                      .|.|+.+|.+.. ..+++.|  ++.++++||..+|+++++|+|++|+|+.++. .|.++++|++|||++|+|+.+++.+|
T Consensus        20 ~p~~~~~c~~~~-~~~~~~c--~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f   96 (635)
T 4g8a_A           20 IPESWEPCVEVV-PNITYQC--MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY   96 (635)
T ss_dssp             -----CCSEEEE-TTTEEEC--TTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT
T ss_pred             CCCCCCCccccC-CCCEEEC--CCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHh
Confidence            455556676654 4467899  9999999999999999999999999999975 79999999999999999999999999


Q ss_pred             CCCCcccEEeCCCCCC--CCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCc
Q psy8551          89 EPQEKLVELQLNHNKH--FPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLG  163 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~  163 (581)
                      .++++|++|+|++|.+  ++...+..+   .+|+  +++.|.++.+++..|+++++|++|++++|.+..+. +..+..++
T Consensus        97 ~~L~~L~~L~Ls~N~l~~l~~~~f~~L---~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~  173 (635)
T 4g8a_A           97 QSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT  173 (635)
T ss_dssp             TTCTTCCEEECTTCCCCEECGGGGTTC---TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred             cCCCCCCEEEccCCcCCCCCHHHhcCC---CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccch
Confidence            9999999999999975  222222222   2333  34444555554444555555555555555544332 12334445


Q ss_pred             cCcEEECCCCcceeccCCcCCCCCC----CcEEEcCCCCccccCccccCCCCCCcEEECCCCcCC-ccCccc--------
Q psy8551         164 MLAELRVGLNVFTTLADGAFNGLGR----LSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTKQ--------  230 (581)
Q Consensus       164 ~L~~L~L~~n~~~~~~~~~l~~l~~----L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~--------  230 (581)
                      +|++|++++|.++++.+..+..+.+    ...++++.+.++.+.+..+. ...+..+++.+|... .+....        
T Consensus       174 ~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~  252 (635)
T 4g8a_A          174 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLE  252 (635)
T ss_dssp             TCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCE
T ss_pred             hhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCccccc-chhhhhhhhhcccccccccchhhcCCcccc
Confidence            5555555555554444333332222    22344444444433322111 111222222222111 000000        


Q ss_pred             -------------------------------------------------cCCCCCCCEEECCCCcccccCCcccCCCccc
Q psy8551         231 -------------------------------------------------LSKLTRLEELEIGQNGFSMLEAGCFKGLSYL  261 (581)
Q Consensus       231 -------------------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  261 (581)
                                                                       +..+.+++.+.+..+.+.....  +.....+
T Consensus       253 ~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L  330 (635)
T 4g8a_A          253 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGW  330 (635)
T ss_dssp             EEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhh
Confidence                                                             1111122222222222222111  2233445


Q ss_pred             ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcc---ccccccCCCCcceEE
Q psy8551         262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTS---FSESMLAWPELRTID  338 (581)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~  338 (581)
                      +.+++.++. +..+   ....+..|+.+.+..+. .....  ....+++|+.++++.|.+..   .+.......+|++++
T Consensus       331 ~~L~l~~~~-~~~~---~~~~l~~L~~l~l~~n~-~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~  403 (635)
T 4g8a_A          331 QHLELVNCK-FGQF---PTLKLKSLKRLTFTSNK-GGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD  403 (635)
T ss_dssp             SEEEEESCE-ESSC---CCCBCTTCCEEEEESCC-SCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEE
T ss_pred             hhhhccccc-ccCc---Ccccchhhhhccccccc-CCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhh
Confidence            555555432 1111   12234567777776662 33222  23456777777777777653   223444566777777


Q ss_pred             ccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCC
Q psy8551         339 IAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQ  418 (581)
Q Consensus       339 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~  418 (581)
                      +..+.......                        .......+....+... ..........|..++.++.++++.|.+.
T Consensus       404 ~~~~~~~~~~~------------------------~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~l~~l~~l~ls~n~l~  458 (635)
T 4g8a_A          404 LSFNGVITMSS------------------------NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTR  458 (635)
T ss_dssp             CCSCSEEEECS------------------------CCTTCTTCCEEECTTS-EEESTTSSCTTTTCTTCCEEECTTSCCE
T ss_pred             ccccccccccc------------------------cccccccccchhhhhc-cccccccccccccccccccccccccccc
Confidence            77664321100                        0001111111111000 0111223456777899999999999999


Q ss_pred             ccChhhhcCCCCCcEeecCCCcc-eeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCC
Q psy8551         419 SIPTKQLSKLTRLEELEIGQNGF-SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED  497 (581)
Q Consensus       419 ~~~~~~l~~l~~L~~L~l~~~~i-~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  497 (581)
                      ...+..+..++.|+.|++++|.+ ....+..+..+++|++|++++ +.++.+.+..|.++++|++|++++| .+..+++.
T Consensus       459 ~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~  536 (635)
T 4g8a_A          459 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTF  536 (635)
T ss_dssp             ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCG
T ss_pred             cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChh
Confidence            88888899999999999999974 456788899999999999998 4899999999999999999999999 88889888


Q ss_pred             ccCCCCCccEEEcCCCcceeec-cccccC-CcceEEecCCCcccccCchhHHHHHHhhcC-----CCceeeCCCcccccc
Q psy8551         498 ALVGLPNLYHLNLKENAFTSFS-ESMLAW-PELRTIDIAENPIECGCNILWLREMLVRRN-----TSAVFCNSPAPLKYK  570 (581)
Q Consensus       498 ~~~~l~~L~~L~l~~n~l~~l~-~~~~~~-~~L~~L~l~~np~~c~c~~~~~~~~~~~~~-----~~~~~c~~~~~~~~~  570 (581)
                      .+.++++|++|++++|+|++++ ..+..+ ++|++|++++|||.|+|+++||.+|+++..     ...++|+.|..++|+
T Consensus       537 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~~~~~~~C~~P~~~~g~  616 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  616 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBSCGGGCBBCSSTTTTTC
T ss_pred             HHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccCCCCCceeCCchHHCCC
Confidence            8999999999999999999875 456666 689999999999999999999999998743     345789999999999


Q ss_pred             cccccCc
Q psy8551         571 SLISLSA  577 (581)
Q Consensus       571 ~~~~~~~  577 (581)
                      +|.+++.
T Consensus       617 ~l~~~~~  623 (635)
T 4g8a_A          617 PVLSLNI  623 (635)
T ss_dssp             BGGGCCC
T ss_pred             Eeeeecc
Confidence            9999853

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-49  Score=439.22  Aligned_cols=538  Identities=24%  Similarity=0.295  Sum_probs=399.8

Q ss_pred             CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccc-cccccCCCcccEEEcCCC-ceeecCCCCCCCCCc
Q psy8551          16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHT-TWLIIPIGGFEPQEK   93 (581)
Q Consensus        16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~-~l~~~~~~~~~~l~~   93 (581)
                      .|++..   ..+.|  ....++.||. +++++++|+|++|.|+.+ +..|.++++|++|++++| .+..+++.+|.++++
T Consensus         1 ~C~~~~---~~~dc--s~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~   74 (844)
T 3j0a_A            1 SCSFDG---RIAFY--RFCNLTQVPQ-VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPN   74 (844)
T ss_dssp             CCBTTT---EEEEE--SCCCSSCCCS-SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTT
T ss_pred             CceEec---eEEEc--cCCCCCCCCC-CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCC
Confidence            367765   67888  9999999999 999999999999999987 468999999999999999 566787889999999


Q ss_pred             ccEEeCCCCCCCCcccccccCCccccc--ccCcccccccch--hhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEE
Q psy8551          94 LVELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQ--ACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAEL  168 (581)
Q Consensus        94 L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~--~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L  168 (581)
                      |++|++++|.+ ..-.+..+..+++|+  +++.|.+++..+  ..++++++|++|++++|.+..+.. ..+.++++|++|
T Consensus        75 L~~L~Ls~N~l-~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L  153 (844)
T 3j0a_A           75 LRILDLGSSKI-YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI  153 (844)
T ss_dssp             CCEEECTTCCC-CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred             CCEEECCCCcC-cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence            99999999986 222233445556777  777888887433  348899999999999999987754 468899999999


Q ss_pred             ECCCCcceeccCCcCCCC--CCCcEEEcCCCCccccCccccCCCCC------CcEEECCCCcCCccCcc-----------
Q psy8551         169 RVGLNVFTTLADGAFNGL--GRLSALDLRGAGLTNISDNAFRGLSG------LRSLVLTDNRLQSIPTK-----------  229 (581)
Q Consensus       169 ~L~~n~~~~~~~~~l~~l--~~L~~L~L~~~~l~~~~~~~l~~~~~------L~~L~l~~n~l~~~~~~-----------  229 (581)
                      ++++|.+++..+..+..+  ++|+.|++++|.+....+..+..+.+      |+.|++++|.++...+.           
T Consensus       154 ~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l  233 (844)
T 3j0a_A          154 DFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA  233 (844)
T ss_dssp             EEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCB
T ss_pred             ECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccc
Confidence            999999887766666655  77888888888777655555554444      78888887765422111           


Q ss_pred             -------------------------ccCC--CCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551         230 -------------------------QLSK--LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD  282 (581)
Q Consensus       230 -------------------------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  282 (581)
                                               .+..  .++|++|++++|.+....+..+..+++|+.|++.+| .+..+.+..|..
T Consensus       234 ~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~  312 (844)
T 3j0a_A          234 FSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYG  312 (844)
T ss_dssp             SEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTT
T ss_pred             cceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcC
Confidence                                     1111  257888888888888777777888888888888875 566676777788


Q ss_pred             CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcC
Q psy8551         283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRN  361 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~  361 (581)
                      +++|++|++++| .++.+....+..+++|+.|++++|.+..+++ .+..+++|++|++++|.+........+..+....+
T Consensus       313 l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N  391 (844)
T 3j0a_A          313 LDNLQVLNLSYN-LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGN  391 (844)
T ss_dssp             CSSCCEEEEESC-CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESC
T ss_pred             CCCCCEEECCCC-CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCC
Confidence            888888888888 5666666678888888888888888876665 46677888888888887753222111100000000


Q ss_pred             CCceeecCCCcccccccccCCccccccCCCCccccCc-cccCCCCCCCEEEcCCCcCCccChh-hhcCCCCCcEeecCCC
Q psy8551         362 TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTK-QLSKLTRLEELEIGQN  439 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~~~~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~~  439 (581)
                      ...   ..+..       ......+....+.+..+.. ..+.++++|+.|++++|.+++.++. .+..+++|++|++++|
T Consensus       392 ~l~---~l~~~-------~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N  461 (844)
T 3j0a_A          392 KLV---TLPKI-------NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN  461 (844)
T ss_dssp             CCC---CCCCC-------CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC
T ss_pred             Ccc---ccccc-------ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC
Confidence            000   00000       0111112222333333322 1234688999999999998865532 4566899999999999


Q ss_pred             ccee-----eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCc
Q psy8551         440 GFSM-----LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA  514 (581)
Q Consensus       440 ~i~~-----~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~  514 (581)
                      .+..     ..+..+..+++|+.|++++ +.++.+.+..|.++++|++|++++| .++.+++..+.  ++|+.|++++|.
T Consensus       462 ~l~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~--~~L~~L~Ls~N~  537 (844)
T 3j0a_A          462 MLQLAWETELCWDVFEGLSHLQVLYLNH-NYLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLP--ANLEILDISRNQ  537 (844)
T ss_dssp             CCSSSCCSCCCSSCSSCBCCEECCCCCH-HHHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCC--SCCCEEEEEEEC
T ss_pred             ccccccccccchhhhcCcccccEEECCC-CcccccChhHccchhhhheeECCCC-CCCccChhhhh--ccccEEECCCCc
Confidence            8873     3445678899999999998 4788888888999999999999999 78888776665  899999999999


Q ss_pred             ceeeccccccCCcceEEecCCCcccccCchhHHHHHHhhc------CCCceeeCCCcccccccccccCcc
Q psy8551         515 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR------NTSAVFCNSPAPLKYKSLISLSAE  578 (581)
Q Consensus       515 l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~------~~~~~~c~~~~~~~~~~~~~~~~~  578 (581)
                      ++++++..  +++|+.+++++||+.|+|++.||.+|....      .+..+.|..|...+|.++.+++.+
T Consensus       538 l~~~~~~~--~~~L~~l~l~~Np~~C~c~~~~f~~~~~~~~~~~~~~~~~~~C~~p~~~~g~~l~~~~~~  605 (844)
T 3j0a_A          538 LLAPNPDV--FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTE  605 (844)
T ss_dssp             CCCCCSCC--CSSCCEEEEEEECCCCSSSCCSHHHHHHHTTTTTCCCGGGCCCSSCSSSCSCCTTTCCCC
T ss_pred             CCCCChhH--hCCcCEEEecCCCcccccccHHHHHHHHhcCcccccccccCccCCchhhCCCccccCccc
Confidence            99876543  468999999999999999999999999763      345678999999999999887653

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.3e-48  Score=410.70  Aligned_cols=511  Identities=21%  Similarity=0.258  Sum_probs=310.9

Q ss_pred             CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcc
Q psy8551          16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL   94 (581)
Q Consensus        16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L   94 (581)
                      .|+|.. ....+.|  .+.+++.+|..+++++++|+|++|.++.++. .|.++++|++|++++|.++.++..+|.++++|
T Consensus         2 ~c~~~~-~~~~~~c--~~~~l~~ip~~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L   78 (570)
T 2z63_A            2 PCVEVV-PNITYQC--MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL   78 (570)
T ss_dssp             CSEEEE-TTTEEEC--CSSCCSSCCSSSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CccccC-CCcEEEe--CCCCccccCCCccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhC
Confidence            455544 3467899  9999999999999999999999999998865 79999999999999999999998999999999


Q ss_pred             cEEeCCCCCCCCcccccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECC
Q psy8551          95 VELQLNHNKHFPQQIVCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVG  171 (581)
Q Consensus        95 ~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~  171 (581)
                      ++|++++|.+. .-....+...++|+  +++.|.++.++...++++++|++|++++|.+..+. +..+.++++|++|+++
T Consensus        79 ~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~  157 (570)
T 2z63_A           79 STLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (570)
T ss_dssp             CEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred             CEEeCcCCcCC-ccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence            99999999741 11111222223333  34444555544444555555555555555554421 2244555555555555


Q ss_pred             CCcceeccCCcCCCCCCC----cEEEcCCCCccccCccccCCCCCCcEEECCCCcCC-----------------------
Q psy8551         172 LNVFTTLADGAFNGLGRL----SALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-----------------------  224 (581)
Q Consensus       172 ~n~~~~~~~~~l~~l~~L----~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-----------------------  224 (581)
                      +|.++.+++..+..+++|    +.+++++|.++.+.+..+... +|+.|++++|...                       
T Consensus       158 ~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             TSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             CCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeecccc
Confidence            555554444444444444    455555555554444433332 4444444443110                       


Q ss_pred             --------ccCccccCCCC--CCCEEECCCC-cccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCC
Q psy8551         225 --------SIPTKQLSKLT--RLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  293 (581)
Q Consensus       225 --------~~~~~~~~~l~--~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (581)
                              .++...+..++  .++.+++.++ .+....+..+..+++|+.+++.++. +..++. .+... +|++|++++
T Consensus       237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~l~~-~~~~~-~L~~L~l~~  313 (570)
T 2z63_A          237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT-IERVKD-FSYNF-GWQHLELVN  313 (570)
T ss_dssp             CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCE-ECSCCB-CCSCC-CCSEEEEES
T ss_pred             ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCcc-chhhhh-hhccC-CccEEeecc
Confidence                    00000000000  0000001000 1111112223334444444444431 222221 22223 444444444


Q ss_pred             CCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCc-hhhHHHHHhhcCCCceeecCCCc
Q psy8551         294 NPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNTSAVFCNSPAP  372 (581)
Q Consensus       294 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~  372 (581)
                      | .+..++.   ..+++|+.|++++|.+...... ..+++|++|++++|.+..... ..++                   
T Consensus       314 n-~~~~l~~---~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~-------------------  369 (570)
T 2z63_A          314 C-KFGQFPT---LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSD-------------------  369 (570)
T ss_dssp             C-BCSSCCB---CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHH-------------------
T ss_pred             C-cccccCc---ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccc-------------------
Confidence            4 2333332   2334444444444443322211 334455555555554431100 0000                   


Q ss_pred             ccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccC
Q psy8551         373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKG  451 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~  451 (581)
                         ..+..+.  .+....+.+..+... +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..
T Consensus       370 ---~~~~~L~--~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  443 (570)
T 2z63_A          370 ---FGTTSLK--YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG  443 (570)
T ss_dssp             ---HTCSCCC--EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred             ---cccCccC--EEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc
Confidence               0000111  111122223334444 7779999999999999987654 56889999999999999999999999999


Q ss_pred             CccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceE
Q psy8551         452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRT  530 (581)
Q Consensus       452 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~  530 (581)
                      +++|++|++++|.......+..+..+++|++|++++| .+..+++..+..+++|++|++++|++++++. .+..+++|++
T Consensus       444 l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  522 (570)
T 2z63_A          444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK  522 (570)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcE
Confidence            9999999999964332345578899999999999999 7777877889999999999999999998764 5778999999


Q ss_pred             EecCCCcccccCchhHHH-HHHhhcCCCce---eeCCCc
Q psy8551         531 IDIAENPIECGCNILWLR-EMLVRRNTSAV---FCNSPA  565 (581)
Q Consensus       531 L~l~~np~~c~c~~~~~~-~~~~~~~~~~~---~c~~~~  565 (581)
                      |++++||++|+|+..|+. +|.+.......   .|+.|.
T Consensus       523 L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~~C~~~~  561 (570)
T 2z63_A          523 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  561 (570)
T ss_dssp             EECCSSCBCCCTTTTHHHHHHHHHTGGGEESCCBBTTTC
T ss_pred             EEecCCcccCCCcchHHHHHHHHhccccCCCchhhCCCC
Confidence            999999999999998887 99887422211   798874

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=1.5e-46  Score=396.83  Aligned_cols=501  Identities=17%  Similarity=0.202  Sum_probs=333.9

Q ss_pred             ccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCC--CCcc
Q psy8551          32 QEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH--FPQQ  108 (581)
Q Consensus        32 ~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~--~~~~  108 (581)
                      .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|.++.+++.+|..+++|++|++++|.+  .+..
T Consensus        13 ~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   92 (549)
T 2z81_A           13 RSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS   92 (549)
T ss_dssp             TTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred             CCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence            888999999999999999999999999875 5899999999999999999999988999999999999999986  2222


Q ss_pred             cccccCCccccc--ccCcccccccc-hhhcCCCCCCcEEeCCCCc-CcccCCcccccCccCcEEECCCCcceeccCCcCC
Q psy8551         109 IVCSIISPRRVE--IFGQNRISRID-QACFEGLTALRILYLDDNQ-LRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN  184 (581)
Q Consensus       109 ~~~~~~~~~~L~--~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~  184 (581)
                      .   +...++|+  +++.|.++.+. +..++++++|++|++++|. +..++...+..+++|++|++++|.+++..+..+.
T Consensus        93 ~---~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  169 (549)
T 2z81_A           93 W---FGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK  169 (549)
T ss_dssp             H---HTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred             H---hccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence            2   33345555  55666666542 3456677777777777776 5555555666777777777777777766666677


Q ss_pred             CCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccC---ccccCCCCCCCEEECCCCcccccCC----cccCC
Q psy8551         185 GLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP---TKQLSKLTRLEELEIGQNGFSMLEA----GCFKG  257 (581)
Q Consensus       185 ~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~  257 (581)
                      .+++|+.|+++++.+..++...+..+++|++|++++|++++.+   ......+++|+.|+++++.+.....    ..+..
T Consensus       170 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~  249 (549)
T 2z81_A          170 SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY  249 (549)
T ss_dssp             TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred             ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence            7777777777777665554444445677777777777776542   1223445677777777776553221    12344


Q ss_pred             CcccceeeecCCCCce--ee---cCccCCCCCCCCEEeCCCCCCcccccc-----ccccCCCCCcEEecCCCCCcccccc
Q psy8551         258 LSYLKRLEITGASNLT--RV---RKGAFADNLNLETLTLNKNPKLKTIEE-----GALVGLPNLYHLNLKENAFTSFSES  327 (581)
Q Consensus       258 ~~~L~~L~l~~~~~~~--~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~L~~L~l~~~~l~~~~~~  327 (581)
                      ++.|+.+++.+|....  .+   ....+..+.+++.+.+.++. +.....     ..+...++|+.+++++|.+..+|..
T Consensus       250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~  328 (549)
T 2z81_A          250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLH-IPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCS  328 (549)
T ss_dssp             CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCB-CSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHH
T ss_pred             hccccccccccccccccccccccchhhhhhhcccccccccccc-cchhhhcccchhhhhhcccceEEEeccCccccCCHH
Confidence            5566666666553111  00   11123344555555555542 211110     0012234566666666666666654


Q ss_pred             c-cCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCc--cccCCC
Q psy8551         328 M-LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD--NAFRGL  404 (581)
Q Consensus       328 ~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~--~~~~~~  404 (581)
                      + ..+++|++|++++|.+....+.    ..   .             ....+..+..  +....+.+..+..  ..+..+
T Consensus       329 ~~~~l~~L~~L~Ls~N~l~~~~~~----~~---~-------------~~~~l~~L~~--L~Ls~N~l~~~~~~~~~~~~l  386 (549)
T 2z81_A          329 FSQHLKSLEFLDLSENLMVEEYLK----NS---A-------------CKGAWPSLQT--LVLSQNHLRSMQKTGEILLTL  386 (549)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHH----HH---T-------------CTTSSTTCCE--EECTTSCCCCHHHHHHHGGGC
T ss_pred             HHhcCccccEEEccCCcccccccc----ch---h-------------hhhccccCcE--EEccCCcccccccchhhhhcC
Confidence            4 2466666666666655421000    00   0             0000011111  1111222222221  346678


Q ss_pred             CCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeee
Q psy8551         405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLT  484 (581)
Q Consensus       405 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~  484 (581)
                      ++|++|++++|+++.++ ..+..+++|++|++++|.++.++...   .++|++|++++| .+++.    ...+++|++|+
T Consensus       387 ~~L~~L~Ls~N~l~~lp-~~~~~~~~L~~L~Ls~N~l~~l~~~~---~~~L~~L~Ls~N-~l~~~----~~~l~~L~~L~  457 (549)
T 2z81_A          387 KNLTSLDISRNTFHPMP-DSCQWPEKMRFLNLSSTGIRVVKTCI---PQTLEVLDVSNN-NLDSF----SLFLPRLQELY  457 (549)
T ss_dssp             TTCCEEECTTCCCCCCC-SCCCCCTTCCEEECTTSCCSCCCTTS---CTTCSEEECCSS-CCSCC----CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCccCC-hhhcccccccEEECCCCCcccccchh---cCCceEEECCCC-Chhhh----cccCChhcEEE
Confidence            99999999999998776 56778899999999999988664432   368999999985 55544    35789999999


Q ss_pred             CCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcccccCc-hhHHHHHHhhcC---CCce
Q psy8551         485 LNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCN-ILWLREMLVRRN---TSAV  559 (581)
Q Consensus       485 l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~---~~~~  559 (581)
                      +++| .++.+|.  ...+++|++|++++|+++++++ .+..+++|++|++++||+.|+|+ ..|+.+|.+...   ...+
T Consensus       458 Ls~N-~l~~ip~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~~~l~~~~~~~~~~~  534 (549)
T 2z81_A          458 ISRN-KLKTLPD--ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA  534 (549)
T ss_dssp             CCSS-CCSSCCC--GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHHHHHHHCTTTEESCC
T ss_pred             CCCC-ccCcCCC--cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHHHHHHhcccccCCCC
Confidence            9999 7788865  4679999999999999998765 47889999999999999999999 678889997753   3445


Q ss_pred             eeCCCcccccccccc
Q psy8551         560 FCNSPAPLKYKSLIS  574 (581)
Q Consensus       560 ~c~~~~~~~~~~~~~  574 (581)
                      .|..|    |+++.+
T Consensus       535 ~C~~~----~~~~~~  545 (549)
T 2z81_A          535 KCSGS----GKPVRS  545 (549)
T ss_dssp             BBTTT----CCBGGG
T ss_pred             eECCC----Ccchhh
Confidence            78877    466554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.4e-45  Score=397.91  Aligned_cols=471  Identities=21%  Similarity=0.184  Sum_probs=301.9

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCC--CCCCCCcccEEeCCCCCCCCccccccc-CCccccc--
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIG--GFEPQEKLVELQLNHNKHFPQQIVCSI-ISPRRVE--  120 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~~-~~~~~L~--  120 (581)
                      +++.++++.+.+..+|..+.++++|++|+|++|.+++..+.  .+.++++|++|++++|.+. ...+... ..+++|+  
T Consensus        78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~~l~~L~~L  156 (768)
T 3rgz_A           78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVSGGLKLNSLEVL  156 (768)
T ss_dssp             TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE-CCSSCCSCCCCTTCSEE
T ss_pred             cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC-CcCCHHHhccCCCCCEE
Confidence            34444444444444445566666666666666665543323  4566666666666666431 1111111 2334444  


Q ss_pred             ccCcccccccchhh---cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCC
Q psy8551         121 IFGQNRISRIDQAC---FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA  197 (581)
Q Consensus       121 ~l~~~~l~~~~~~~---l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~  197 (581)
                      +++.|.+++..+..   +.++++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+. +.++++|++|++++|
T Consensus       157 ~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n  233 (768)
T 3rgz_A          157 DLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGN  233 (768)
T ss_dssp             ECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSS
T ss_pred             ECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCC
Confidence            45556665555544   5566666666666666554432  24566666666666666554443 566666666666666


Q ss_pred             CccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCC-CcccceeeecCCCCceeec
Q psy8551         198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG-LSYLKRLEITGASNLTRVR  276 (581)
Q Consensus       198 ~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~  276 (581)
                      .+++..+..+..+++|++|++++|++++..+..  .+++|++|++++|.+.+..+..+.. +++|+.|++++| .+....
T Consensus       234 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n-~l~~~~  310 (768)
T 3rgz_A          234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN-HFYGAV  310 (768)
T ss_dssp             CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSS-EEEECC
T ss_pred             cCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCC-cCCCcc
Confidence            666555555666666666666666665433221  5566666666666665433333333 366666666654 333344


Q ss_pred             CccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCC-CcceEEccCCCCccCCchhhHH
Q psy8551         277 KGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWP-ELRTIDIAENPIECGCNILWLR  354 (581)
Q Consensus       277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~  354 (581)
                      +..+..+++|++|++++|...+.++...+..+++|++|++++|.++ .+|..+..++ +|++|++++|.+.+..      
T Consensus       311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~------  384 (768)
T 3rgz_A          311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------  384 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEEC------
T ss_pred             chHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCc------
Confidence            4455666666666666663333555444566666666666666665 4555555554 6666666666543211      


Q ss_pred             HHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEe
Q psy8551         355 EMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL  434 (581)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  434 (581)
                                     +..........  ...+....+.+.......+.++++|++|++++|.+++..+..+..+++|++|
T Consensus       385 ---------------~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L  447 (768)
T 3rgz_A          385 ---------------LPNLCQNPKNT--LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL  447 (768)
T ss_dssp             ---------------CTTTTCSTTCC--CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEE
T ss_pred             ---------------ChhhhhcccCC--ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEE
Confidence                           11111100111  2223334444554556678889999999999999998888899999999999


Q ss_pred             ecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCc
Q psy8551         435 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENA  514 (581)
Q Consensus       435 ~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~  514 (581)
                      ++++|.+.+..+..+..+++|++|++++| .+....+..+.++++|++|++++| .+....+.+++.+++|++|++++|+
T Consensus       448 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~  525 (768)
T 3rgz_A          448 KLWLNMLEGEIPQELMYVKTLETLILDFN-DLTGEIPSGLSNCTNLNWISLSNN-RLTGEIPKWIGRLENLAILKLSNNS  525 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSS-CCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred             ECCCCcccCcCCHHHcCCCCceEEEecCC-cccCcCCHHHhcCCCCCEEEccCC-ccCCcCChHHhcCCCCCEEECCCCc
Confidence            99999999988889999999999999984 666667788999999999999999 5554446789999999999999999


Q ss_pred             ce-eeccccccCCcceEEecCCCcccccCchhHHH
Q psy8551         515 FT-SFSESMLAWPELRTIDIAENPIECGCNILWLR  548 (581)
Q Consensus       515 l~-~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~  548 (581)
                      ++ .+|..+..+++|++|++++|++++.++..++.
T Consensus       526 l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~  560 (768)
T 3rgz_A          526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK  560 (768)
T ss_dssp             CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred             ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence            98 68889999999999999999999999865543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.6e-43  Score=382.02  Aligned_cols=410  Identities=19%  Similarity=0.129  Sum_probs=215.9

Q ss_pred             cCccEEEcccCCcc-cccc--cccCCCcccEEEcCCCceeecCCCC-CCCCCcccEEeCCCCCCC--CcccccccCCccc
Q psy8551          45 PSIQRLVLSTNRIK-TVDS--AIPIYLSLQHVDLSHTTWLIIPIGG-FEPQEKLVELQLNHNKHF--PQQIVCSIISPRR  118 (581)
Q Consensus        45 ~~l~~L~L~~~~i~-~l~~--~~~~~~~L~~L~ls~~~l~~~~~~~-~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~  118 (581)
                      +++++|+|++|.+. .+|.  .+.++++|++|++++|.++...+.. +.++++|++|++++|.+.  ....+..+...++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence            79999999999997 4676  8999999999999999988544433 478999999999999862  1111111333445


Q ss_pred             cc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCC
Q psy8551         119 VE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG  196 (581)
Q Consensus       119 L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  196 (581)
                      |+  +++.|.+++..+  +..+++|++|++++|.+....+. +..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus       180 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~  256 (768)
T 3rgz_A          180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS  256 (768)
T ss_dssp             CCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred             CCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence            55  455555554433  35566666666666666654443 56666666666666666654444566666666666666


Q ss_pred             CCccccCccccCCCCCCcEEECCCCcCCccCccccCC-CCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceee
Q psy8551         197 AGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK-LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV  275 (581)
Q Consensus       197 ~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  275 (581)
                      |.+++..+..  .+++|++|++++|++++..+..+.. +++|++|++++|.+....+..+..+++|+.|++++|.....+
T Consensus       257 n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~i  334 (768)
T 3rgz_A          257 NQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL  334 (768)
T ss_dssp             SCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEEC
T ss_pred             CcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcC
Confidence            6555433321  4455555555555555222222322 355555555555555444444555555555555544322233


Q ss_pred             cCccCCCCCC-------------------------CCEEeCCCCCCccccccccccC--CCCCcEEecCCCCCc-ccccc
Q psy8551         276 RKGAFADNLN-------------------------LETLTLNKNPKLKTIEEGALVG--LPNLYHLNLKENAFT-SFSES  327 (581)
Q Consensus       276 ~~~~~~~~~~-------------------------L~~L~l~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~l~-~~~~~  327 (581)
                      +...+..+++                         |++|++++|...+.++. .+..  +++|+.|++++|.++ .+|..
T Consensus       335 p~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~p~~  413 (768)
T 3rgz_A          335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILP-NLCQNPKNTLQELYLQNNGFTGKIPPT  413 (768)
T ss_dssp             CHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCT-TTTCSTTCCCCEEECCSSEEEEECCGG
T ss_pred             CHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcCh-hhhhcccCCccEEECCCCccccccCHH
Confidence            3333444444                         44444444422112221 1222  455666666666665 44556


Q ss_pred             ccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecC--CCcccccccccCCccccccCCCCccccCccccCCCC
Q psy8551         328 MLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNS--PAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS  405 (581)
Q Consensus       328 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~  405 (581)
                      +..+++|++|++++|.+.+..+..+ ..+..-.......+..  ..+........+..  +....+.+.......+.+++
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~--L~L~~N~l~~~~p~~l~~l~  490 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSL-GSLSKLRDLKLWLNMLEGEIPQELMYVKTLET--LILDFNDLTGEIPSGLSNCT  490 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE--EECCSSCCCSCCCGGGGGCT
T ss_pred             HhcCCCCCEEECcCCcccCcccHHH-hcCCCCCEEECCCCcccCcCCHHHcCCCCceE--EEecCCcccCcCCHHHhcCC
Confidence            6666677777777766543222111 0000000000000000  00111111112221  11222333333334455566


Q ss_pred             CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCC
Q psy8551         406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA  463 (581)
Q Consensus       406 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~  463 (581)
                      +|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus       491 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence            6666666666665554555556666666666666666555555555555555555543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.1e-41  Score=363.93  Aligned_cols=486  Identities=19%  Similarity=0.255  Sum_probs=389.2

Q ss_pred             ccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCc
Q psy8551          47 IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQ  124 (581)
Q Consensus        47 l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~  124 (581)
                      -+.++.++..++.+|..+.  +++++|++++|.++.+++..|.++++|++|++++|.+ ..-.+..+..+++|+  +++.
T Consensus        14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i-~~~~~~~~~~l~~L~~L~Ls~   90 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTA   90 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCC-CEECTTTTTTCTTCCEEECTT
T ss_pred             CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCcc-ceeChhhccCccccCeeeCCC
Confidence            4578889999999998664  4799999999999999888999999999999999986 222223445567777  7788


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                      |.++.+.+..|+++++|++|++++|.++.++...+..+++|++|++++|.+.++....+..+++|+.|++++|.++.+.+
T Consensus        91 n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           91 NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred             CcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence            99999999999999999999999999999877788999999999999999998765556679999999999999999988


Q ss_pred             cccCCCCCCc--EEECCCCcCCccCccccCCC------------------------------------------------
Q psy8551         205 NAFRGLSGLR--SLVLTDNRLQSIPTKQLSKL------------------------------------------------  234 (581)
Q Consensus       205 ~~l~~~~~L~--~L~l~~n~l~~~~~~~~~~l------------------------------------------------  234 (581)
                      ..+..+++|+  .|++++|.++++++..+...                                                
T Consensus       171 ~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~  250 (606)
T 3t6q_A          171 EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG  250 (606)
T ss_dssp             HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGG
T ss_pred             hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhch
Confidence            8899999999  99999999998776554321                                                


Q ss_pred             ---CCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCC
Q psy8551         235 ---TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNL  311 (581)
Q Consensus       235 ---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  311 (581)
                         .+|+++++++|.+..+++..+..+++|+.|+++++ .++.++. .+..+++|++|++++| .+..+++..+..+++|
T Consensus       251 l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~lp~-~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L  327 (606)
T 3t6q_A          251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPS-GLVGLSTLKKLVLSAN-KFENLCQISASNFPSL  327 (606)
T ss_dssp             GGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTS-CCSCCCS-SCCSCTTCCEEECTTC-CCSBGGGGCGGGCTTC
T ss_pred             hhcCceeEEEeecCccCccCHHHhccccCCCEEeccCC-ccCCCCh-hhcccccCCEEECccC-CcCcCchhhhhccCcC
Confidence               15778888888888888888999999999999997 4555544 5788899999999999 6777766678999999


Q ss_pred             cEEecCCCCCc-cccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccC
Q psy8551         312 YHLNLKENAFT-SFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA  389 (581)
Q Consensus       312 ~~L~l~~~~l~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  389 (581)
                      +.|++++|.+. .++. .+..+++|++|++++|.+......                     +.....+..+..  +...
T Consensus       328 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---------------------~~~~~~l~~L~~--L~l~  384 (606)
T 3t6q_A          328 THLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC---------------------NLQLRNLSHLQS--LNLS  384 (606)
T ss_dssp             SEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEES---------------------TTTTTTCTTCCE--EECC
T ss_pred             CEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCc---------------------chhcccCCCCCE--EECC
Confidence            99999999887 5554 477899999999999987532100                     001111222222  2233


Q ss_pred             CCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeE
Q psy8551         390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTR  468 (581)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~  468 (581)
                      .+.+..+....|..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.....
T Consensus       385 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  464 (606)
T 3t6q_A          385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG  464 (606)
T ss_dssp             SCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGG
T ss_pred             CCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCcc
Confidence            445566677788889999999999999987644 4588999999999999999998888899999999999999653321


Q ss_pred             --ecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcccccCchh
Q psy8551         469 --VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNIL  545 (581)
Q Consensus       469 --~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~~~  545 (581)
                        .....+..+++|++|++++| .+..+++..+.++++|++|++++|+++.+ |+.+..+++| +|++++|+++. ....
T Consensus       465 ~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~-~~~~  541 (606)
T 3t6q_A          465 NIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISI-ILPS  541 (606)
T ss_dssp             EECSSCGGGGCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCC-CCGG
T ss_pred             ccccchhhccCCCccEEECCCC-ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccc-cCHh
Confidence              22356888999999999999 78888788899999999999999999864 5778889999 99999999984 3333


Q ss_pred             HHHHHHhh----cCCCceeeCCC
Q psy8551         546 WLREMLVR----RNTSAVFCNSP  564 (581)
Q Consensus       546 ~~~~~~~~----~~~~~~~c~~~  564 (581)
                      ++..+..-    -......|.++
T Consensus       542 ~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          542 LLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             GHHHHHTSSEEECTTCCEECSGG
T ss_pred             hcccCCCCCEEeCCCCCccccCC
Confidence            44443321    23334456655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.6e-44  Score=378.28  Aligned_cols=452  Identities=19%  Similarity=0.210  Sum_probs=296.4

Q ss_pred             CCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCC
Q psy8551          25 RDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK  103 (581)
Q Consensus        25 ~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~  103 (581)
                      +.+.|  ++..++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|+++.+++..|.++++|++|++++|.
T Consensus         3 ~~l~l--s~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            3 FLVDR--SKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             CEEEC--TTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred             ceEec--CCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence            56777  999999999999999999999999999887 589999999999999999999987889999999999999997


Q ss_pred             CCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECCCCcceeccCCc
Q psy8551         104 HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGLNVFTTLADGA  182 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~~  182 (581)
                      +                       +.++..   .+++|++|++++|.++.++ +..++.+++|++|++++|.+++.   .
T Consensus        81 l-----------------------~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~  131 (520)
T 2z7x_B           81 L-----------------------VKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S  131 (520)
T ss_dssp             C-----------------------CEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G
T ss_pred             e-----------------------eecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h
Confidence            5                       222221   4555666666666555432 23455555666666655555431   2


Q ss_pred             CCCCCCC--cEEEcCCCCc--cccCccccCCCC-CCcEEECCCCcCCc-cCccccCCCCCCCEEECCCCc-------ccc
Q psy8551         183 FNGLGRL--SALDLRGAGL--TNISDNAFRGLS-GLRSLVLTDNRLQS-IPTKQLSKLTRLEELEIGQNG-------FSM  249 (581)
Q Consensus       183 l~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~-------~~~  249 (581)
                      +..+++|  +.|++++|.+  ....+..+..+. ....+++.+|.+.+ ++...+..+++|+.+++++|.       +.+
T Consensus       132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  211 (520)
T 2z7x_B          132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS  211 (520)
T ss_dssp             GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred             ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence            3444444  5556555555  333333333322 12234444444432 233334445555555555443       222


Q ss_pred             cCCcccCCCcccceeee---------------------------cCCCCceeecCccC----CCCCCCCEEeCCCCCCcc
Q psy8551         250 LEAGCFKGLSYLKRLEI---------------------------TGASNLTRVRKGAF----ADNLNLETLTLNKNPKLK  298 (581)
Q Consensus       250 ~~~~~~~~~~~L~~L~l---------------------------~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~  298 (581)
                      ..+ .+..+++|+.|++                           ++|.....++...+    ..+++|+.++++++. + 
T Consensus       212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~-~-  288 (520)
T 2z7x_B          212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDV-F-  288 (520)
T ss_dssp             HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECC-C-
T ss_pred             chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccc-e-
Confidence            111 2334444444444                           44321111221111    334444444444442 2 


Q ss_pred             ccccccccCC---CCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccc
Q psy8551         299 TIEEGALVGL---PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY  375 (581)
Q Consensus       299 ~~~~~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  375 (581)
                      .++...+..+   .+|+.|++++|.+...+. ...+++|++|++++|.+.                              
T Consensus       289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~------------------------------  337 (520)
T 2z7x_B          289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLT------------------------------  337 (520)
T ss_dssp             CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC------------------------------
T ss_pred             ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccC------------------------------
Confidence            2221112111   345555555554443221 134455555555555432                              


Q ss_pred             cccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccC--hhhhcCCCCCcEeecCCCccee-eccccccCC
Q psy8551         376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP--TKQLSKLTRLEELEIGQNGFSM-LEAGCFKGL  452 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~l~~~~i~~-~~~~~~~~~  452 (581)
                                         ......+.++++|++|++++|.+++++  +..+..+++|++|++++|.+++ .+...+..+
T Consensus       338 -------------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          338 -------------------DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT  398 (520)
T ss_dssp             -------------------TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred             -------------------hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC
Confidence                               223345677899999999999999743  3678999999999999999998 666668899


Q ss_pred             ccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEE
Q psy8551         453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTI  531 (581)
Q Consensus       453 ~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L  531 (581)
                      ++|++|++++| .++...+..+.  ++|++|++++| .++.+|.. +..+++|++|++++|+++.+|.. +..+++|++|
T Consensus       399 ~~L~~L~Ls~N-~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~-~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          399 KSLLSLNMSSN-ILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQ-VVKLEALQELNVASNQLKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             TTCCEEECCSS-CCCGGGGGSCC--TTCCEEECCSS-CCCCCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCEEECcCC-CCCcchhhhhc--ccCCEEECCCC-cccccchh-hhcCCCCCEEECCCCcCCccCHHHhccCCcccEE
Confidence            99999999985 44443333332  69999999999 78888654 55999999999999999999976 7789999999


Q ss_pred             ecCCCcccccCchhHH-HHHHhhcCC---CceeeCCCc
Q psy8551         532 DIAENPIECGCNILWL-REMLVRRNT---SAVFCNSPA  565 (581)
Q Consensus       532 ~l~~np~~c~c~~~~~-~~~~~~~~~---~~~~c~~~~  565 (581)
                      ++++||++|+|+++|+ ..|.++...   ..+.|+.|.
T Consensus       474 ~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~C~~p~  511 (520)
T 2z7x_B          474 WLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  511 (520)
T ss_dssp             ECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred             ECcCCCCcccCCchHHHHHHHHhccccCCCCCCcCCcc
Confidence            9999999999999999 899977543   456799984

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.1e-42  Score=358.37  Aligned_cols=420  Identities=21%  Similarity=0.317  Sum_probs=282.3

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccc-cccccCCCcccEEEcCCCcee-ecCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWL-IIPIGGF   88 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~-~~~~~~~   88 (581)
                      .+||..|.|..   +.+.|  .+.+++.+|. +++++++|+|++|.++.+ |..+.++++|++|++++|.+. .++...|
T Consensus         2 ~p~~~~c~~~~---~~~~c--~~~~l~~lp~-l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~   75 (455)
T 3v47_A            2 DPGTSECSVIG---YNAIC--INRGLHQVPE-LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF   75 (455)
T ss_dssp             -----CCEEET---TEEEC--CSSCCSSCCC-CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTT
T ss_pred             CCccceeEEEc---cccCc--CCCCcccCCC-CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccc
Confidence            36888999877   67999  9999999998 889999999999999987 567889999999999999875 6666778


Q ss_pred             CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCccc--CCcccccCccCc
Q psy8551          89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV--PTPSFIYLGMLA  166 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~~~L~  166 (581)
                      .++++|++|++++|.                       ++.+.+..|+++++|++|++++|.+++.  ....+..+++|+
T Consensus        76 ~~l~~L~~L~Ls~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~  132 (455)
T 3v47_A           76 RGLSSLIILKLDYNQ-----------------------FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLE  132 (455)
T ss_dssp             TTCTTCCEEECTTCT-----------------------TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCC
T ss_pred             cccccCCEEeCCCCc-----------------------cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCC
Confidence            888888888888875                       3444455677777777777777777652  222355556666


Q ss_pred             EEECCCCcceeccCCc-CCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCC--CCCCEEECC
Q psy8551         167 ELRVGLNVFTTLADGA-FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL--TRLEELEIG  243 (581)
Q Consensus       167 ~L~L~~n~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~  243 (581)
                      +|++++|.++++.+.. +.++++|++|++++|.++...+                        ..+..+  .+|+.++++
T Consensus       133 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~------------------------~~l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          133 MLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE------------------------EDLLNFQGKHFTLLRLS  188 (455)
T ss_dssp             EEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT------------------------TTSGGGTTCEEEEEECT
T ss_pred             EEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh------------------------hhhhccccccccccccc
Confidence            6666666555543332 4445555555555554444433                        333332  355555565


Q ss_pred             CCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccccccccc---CCCCCcEEecCCCC
Q psy8551         244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALV---GLPNLYHLNLKENA  320 (581)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~  320 (581)
                      +|.+.......+..                 .....+...++|++|++++|...+..+. .+.   ..++++.+++++|.
T Consensus       189 ~n~l~~~~~~~~~~-----------------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L~~L~l~~~~  250 (455)
T 3v47_A          189 SITLQDMNEYWLGW-----------------EKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKIQSLILSNSY  250 (455)
T ss_dssp             TCBCTTCSTTCTTH-----------------HHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCEEEEECTTCT
T ss_pred             cCcccccchhhccc-----------------cccccccccceeeeEecCCCcccccchh-hhhccccccceeeEeecccc
Confidence            55554433321110                 0000011223344444444421111111 111   11344444444443


Q ss_pred             CccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccc
Q psy8551         321 FTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNA  400 (581)
Q Consensus       321 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~  400 (581)
                      ..........                                                              +.......
T Consensus       251 ~~~~~~~~~~--------------------------------------------------------------~~~~~~~~  268 (455)
T 3v47_A          251 NMGSSFGHTN--------------------------------------------------------------FKDPDNFT  268 (455)
T ss_dssp             TTSCCTTCCS--------------------------------------------------------------SCCCCTTT
T ss_pred             ccccccchhh--------------------------------------------------------------hccCcccc
Confidence            2211000000                                                              00000111


Q ss_pred             cC--CCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCC
Q psy8551         401 FR--GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  478 (581)
Q Consensus       401 ~~--~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~  478 (581)
                      +.  ..++|+.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++ +.++.+.+..+.+++
T Consensus       269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~  347 (455)
T 3v47_A          269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLD  347 (455)
T ss_dssp             TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGTTCT
T ss_pred             cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhcCcc
Confidence            11  146899999999999988888899999999999999999999888899999999999998 477888888899999


Q ss_pred             CCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhcCC
Q psy8551         479 NLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRRNT  556 (581)
Q Consensus       479 ~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~~  556 (581)
                      +|++|++++| .+..+++..+.++++|++|++++|+++.+|.. +..+++|++|++++||++|+|+ ..|+.+|.+....
T Consensus       348 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~  426 (455)
T 3v47_A          348 KLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQ  426 (455)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTTT
T ss_pred             cCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHHHHhCcc
Confidence            9999999999 77888788899999999999999999998864 5689999999999999999998 7899999987533


Q ss_pred             ---CceeeCCCc
Q psy8551         557 ---SAVFCNSPA  565 (581)
Q Consensus       557 ---~~~~c~~~~  565 (581)
                         ....|..+.
T Consensus       427 ~~~~~~~c~~~~  438 (455)
T 3v47_A          427 KEQGSAKCSGSG  438 (455)
T ss_dssp             TEESCCBBTTTC
T ss_pred             ceeeeeeecCCC
Confidence               334677654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=4.4e-43  Score=370.31  Aligned_cols=475  Identities=19%  Similarity=0.221  Sum_probs=312.6

Q ss_pred             hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCC
Q psy8551          10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGF   88 (581)
Q Consensus        10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~   88 (581)
                      ...++..|.|..  .+.+.|  ++..++.+|..+++++++|+|++|.++.++ ..|.++++|++|++++|.++.+++.+|
T Consensus        21 ~~~~~~~~~~~~--~~~l~l--s~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~   96 (562)
T 3a79_B           21 IVGSMTPFSNEL--ESMVDY--SNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF   96 (562)
T ss_dssp             --------------CCEEEC--TTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT
T ss_pred             HhccccccccCC--CcEEEc--CCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh
Confidence            344556666765  267888  999999999999999999999999999987 489999999999999999999988899


Q ss_pred             CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcE
Q psy8551          89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAE  167 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~  167 (581)
                      .++++|++|++++|.+                       +.++..   .+++|++|++++|.++.++. ..+.++++|++
T Consensus        97 ~~l~~L~~L~Ls~N~l-----------------------~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~  150 (562)
T 3a79_B           97 LFNQDLEYLDVSHNRL-----------------------QNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTF  150 (562)
T ss_dssp             TTCTTCCEEECTTSCC-----------------------CEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCE
T ss_pred             CCCCCCCEEECCCCcC-----------------------CccCcc---ccccCCEEECCCCCccccCchHhhcccCcccE
Confidence            9999999999999975                       222222   46667777777776666542 45666667777


Q ss_pred             EECCCCcceeccCCcCCCCCCC--cEEEcCCCCc--cccCccccCCCC-CCcEEECCCCcCCc-cCccccCCCCCCCEEE
Q psy8551         168 LRVGLNVFTTLADGAFNGLGRL--SALDLRGAGL--TNISDNAFRGLS-GLRSLVLTDNRLQS-IPTKQLSKLTRLEELE  241 (581)
Q Consensus       168 L~L~~n~~~~~~~~~l~~l~~L--~~L~L~~~~l--~~~~~~~l~~~~-~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~  241 (581)
                      |++++|.++..   .+..+++|  +.|++++|.+  +...+..+..+. ..-.+++.+|.+.. ++...+..+++|+.++
T Consensus       151 L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~  227 (562)
T 3a79_B          151 LGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN  227 (562)
T ss_dssp             EEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEE
T ss_pred             EecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEec
Confidence            77776666542   23334444  6677766666  444444444332 11134455554443 2333344555555555


Q ss_pred             CCCCcc-----cccCCcccCCCc---------------------------ccceeeecCCCCceeecCccC----CCCCC
Q psy8551         242 IGQNGF-----SMLEAGCFKGLS---------------------------YLKRLEITGASNLTRVRKGAF----ADNLN  285 (581)
Q Consensus       242 l~~~~~-----~~~~~~~~~~~~---------------------------~L~~L~l~~~~~~~~~~~~~~----~~~~~  285 (581)
                      +++|..     .... ..+..++                           +|+.|++++|.....++...+    ..++.
T Consensus       228 l~~n~~~~~~l~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~  306 (562)
T 3a79_B          228 IKLNDENCQRLMTFL-SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKS  306 (562)
T ss_dssp             EECCSTTHHHHHHHH-HHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCE
T ss_pred             ccccccccchHHHHH-HHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchh
Confidence            555421     0000 1122233                           455555554421112222211    22233


Q ss_pred             CCEEeCCCCCCcccccccccc---CCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC
Q psy8551         286 LETLTLNKNPKLKTIEEGALV---GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT  362 (581)
Q Consensus       286 L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~  362 (581)
                      |+.+++..+. + .++...+.   ...+++.|++++|.+..++. ...+++|++|++++|.+.                 
T Consensus       307 L~~~~~~~~~-~-~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~-----------------  366 (562)
T 3a79_B          307 LMIEHVKNQV-F-LFSKEALYSVFAEMNIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFT-----------------  366 (562)
T ss_dssp             EEEEEEEECC-C-SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCC-----------------
T ss_pred             eehhhcccce-e-ecChhhhhhhhccCcceEEEccCCCcccccC-ccCCCCceEEECCCCccc-----------------
Confidence            3333333331 1 22211111   11346666666666553321 135566777777666553                 


Q ss_pred             CceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh--hhhcCCCCCcEeecCCCc
Q psy8551         363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT--KQLSKLTRLEELEIGQNG  440 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~--~~l~~l~~L~~L~l~~~~  440 (581)
                                                      ......+.++++|++|++++|.+++++.  ..+..+++|++|++++|.
T Consensus       367 --------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~  414 (562)
T 3a79_B          367 --------------------------------DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS  414 (562)
T ss_dssp             --------------------------------TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSC
T ss_pred             --------------------------------cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCc
Confidence                                            2233456778999999999999998653  568899999999999999


Q ss_pred             cee-eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec
Q psy8551         441 FSM-LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS  519 (581)
Q Consensus       441 i~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~  519 (581)
                      +++ .+...+..+++|++|++++| .++...+..+.  ++|++|++++| .++.+|... ..+++|++|++++|+++.+|
T Consensus       415 l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~-~~l~~L~~L~L~~N~l~~l~  489 (562)
T 3a79_B          415 LNSHAYDRTCAWAESILVLNLSSN-MLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDV-THLQALQELNVASNQLKSVP  489 (562)
T ss_dssp             CBSCCSSCCCCCCTTCCEEECCSS-CCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTT-TSSCCCSEEECCSSCCCCCC
T ss_pred             CCCccChhhhcCcccCCEEECCCC-CCCcchhhhhc--CcCCEEECCCC-cCcccChhh-cCCCCCCEEECCCCCCCCCC
Confidence            998 66667889999999999985 45443333332  69999999999 888887654 49999999999999999999


Q ss_pred             cc-cccCCcceEEecCCCcccccCchhHHHH-HHhhcC-----------CCceeeCCCcccccccccccCccc
Q psy8551         520 ES-MLAWPELRTIDIAENPIECGCNILWLRE-MLVRRN-----------TSAVFCNSPAPLKYKSLISLSAED  579 (581)
Q Consensus       520 ~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~-~~~~~~-----------~~~~~c~~~~~~~~~~~~~~~~~~  579 (581)
                      .. +..+++|++|++++||+.|+|++.|+.+ |.....           +..+.|..    +|+++.++...+
T Consensus       490 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~----~g~~l~~~~c~~  558 (562)
T 3a79_B          490 DGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG----SGKPVRSIICPT  558 (562)
T ss_dssp             TTSTTTCTTCCCEECCSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS----SCCCTTTCCCC-
T ss_pred             HHHHhcCCCCCEEEecCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC----CCcEeeeecCCC
Confidence            87 7889999999999999999999999966 876532           34556776    899998886554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2.3e-41  Score=366.21  Aligned_cols=465  Identities=20%  Similarity=0.276  Sum_probs=308.2

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCcc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQN  125 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~  125 (581)
                      +.++.+++.++++|..+.  +++++|++++|.++.++...|.++++|++|++++|.+. .-.+..+..+++|+  +++.|
T Consensus         7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-KLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-CCCTTHHHHCTTCCEEECCSS
T ss_pred             CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-ccCHHHHhcccCcCEEECCCC
Confidence            578999999999998664  79999999999999999888999999999999999862 11122233446666  77889


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN  205 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  205 (581)
                      .++.+++.+|+++++|++|++++|.+..+++..+..+++|++|++++|.+++.++..+.++++|+.|++++|.++...+.
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence            99999988899999999999999999999888899999999999999999988888899999999999999999988776


Q ss_pred             ccC--CCCCCcEEECCCCcCCccCccccCCC---------------------------CCCCEEECCCCcccccCCcccC
Q psy8551         206 AFR--GLSGLRSLVLTDNRLQSIPTKQLSKL---------------------------TRLEELEIGQNGFSMLEAGCFK  256 (581)
Q Consensus       206 ~l~--~~~~L~~L~l~~n~l~~~~~~~~~~l---------------------------~~L~~L~l~~~~~~~~~~~~~~  256 (581)
                      .+.  .+++|++|++++|+++++++..+..+                           ++|++|++++|.+....+..+.
T Consensus       164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~  243 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL  243 (680)
T ss_dssp             HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred             HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence            554  45789999999998887765544433                           3455555555555555555555


Q ss_pred             CCcc--cceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecC-----------------
Q psy8551         257 GLSY--LKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK-----------------  317 (581)
Q Consensus       257 ~~~~--L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~-----------------  317 (581)
                      .++.  |+.|++++| .+..+.+..+..+++|++|++++| .+..+.+..+..+++|+.|+++                 
T Consensus       244 ~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~  321 (680)
T 1ziw_A          244 GLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKID  321 (680)
T ss_dssp             GGGGSCCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSC-CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEEC
T ss_pred             ccCcCCCCEEECCCC-CcCccCcccccCcccccEeeCCCC-ccCccChhhhcCCCCccEEeccchhhhcccccccccccC
Confidence            5443  666666664 344555555566666666666666 3444433344555555555554                 


Q ss_pred             ----------------CCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccccccccc
Q psy8551         318 ----------------ENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS  380 (581)
Q Consensus       318 ----------------~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (581)
                                      +|.++.+++ .+..+++|++|++++|.+......                     ...+.....
T Consensus       322 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~---------------------~~~f~~~~~  380 (680)
T 1ziw_A          322 DFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT---------------------NETFVSLAH  380 (680)
T ss_dssp             TTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC---------------------TTTTGGGTT
T ss_pred             hhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc---------------------hhhhccccc
Confidence                            444443322 233444455555444432110000                     000000000


Q ss_pred             CCccccccCCCCccccCc-------------------------cccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEee
Q psy8551         381 LSAEDLGCAGAGLTNISD-------------------------NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE  435 (581)
Q Consensus       381 l~~~~~~~~~~~~~~i~~-------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  435 (581)
                      .....+....+.+..+..                         ..|.++++|++|++++|.+.+..+..+..+++|++|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            011111122222333333                         3444455555555555555544444555555555555


Q ss_pred             cCCCcce--eeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecC--------CccCCCCCc
Q psy8551         436 IGQNGFS--MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEE--------DALVGLPNL  505 (581)
Q Consensus       436 l~~~~i~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--------~~~~~l~~L  505 (581)
                      +++|.+.  +..+..+..+++|+.|++++ +.++.+.+..|.++++|++|++++| .+..++.        ..+.++++|
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L  538 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSN-NNIANINDDMLEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHL  538 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTC
T ss_pred             hccccccccccCCcccccCCCCCEEECCC-CCCCcCChhhhccccccCEEeCCCC-CccccchhhccCCcchhhcCCCCC
Confidence            5555544  23445566677777777776 4566677777777888888888888 5555422        236778888


Q ss_pred             cEEEcCCCcceeecc-ccccCCcceEEecCCCcccc
Q psy8551         506 YHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       506 ~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c  540 (581)
                      ++|++++|+++.+|. .+..+++|++|++++|.++.
T Consensus       539 ~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~  574 (680)
T 1ziw_A          539 HILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT  574 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CEEECCCCCCCCCCHHHcccccCcceeECCCCCCCc
Confidence            888888888888775 46778889999998888863

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-41  Score=361.34  Aligned_cols=456  Identities=23%  Similarity=0.255  Sum_probs=364.8

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccC
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFG  123 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~  123 (581)
                      .-++++.++..++.+|..+.  +++++|++++|.++.++...|.++++|++|++++|.+. .-.+..+...++|+  +++
T Consensus        12 ~~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls   88 (606)
T 3vq2_A           12 PNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILT   88 (606)
T ss_dssp             TTTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECT
T ss_pred             CCCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECC
Confidence            34679999999999998654  89999999999999999989999999999999999862 11122344556677  777


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCcccc
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                      .|.++.+.+..|+++++|++|++++|.+..++...++.+++|++|++++|.+.++. +..+.++++|++|++++|.++.+
T Consensus        89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred             CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence            89999998888999999999999999999888778999999999999999988633 55788999999999999999988


Q ss_pred             CccccCCCCCC----cEEECCCCcCCccCccccCCCCCCCEEECCCCcccc-----------------------------
Q psy8551         203 SDNAFRGLSGL----RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-----------------------------  249 (581)
Q Consensus       203 ~~~~l~~~~~L----~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~-----------------------------  249 (581)
                      .+..+..+.+|    .+|++++|.++.+++..+... +|++|++++|.+..                             
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l  247 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL  247 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence            77666655544    489999999998887666554 89999998886531                             


Q ss_pred             -----------------------------cCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccc
Q psy8551         250 -----------------------------LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI  300 (581)
Q Consensus       250 -----------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (581)
                                                   ..+. +..+++|+.+++.++. +..++  .+..+++|+.|++++| .++.+
T Consensus       248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~-~~~l~--~l~~~~~L~~L~l~~n-~l~~l  322 (606)
T 3vq2_A          248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVS-IKYLE--DVPKHFKWQSLSIIRC-QLKQF  322 (606)
T ss_dssp             SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCC-CCCCC--CCCTTCCCSEEEEESC-CCSSC
T ss_pred             cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCcc-chhhh--hccccccCCEEEcccc-cCccc
Confidence                                         1111 4556788888888864 44454  6788899999999999 55888


Q ss_pred             ccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccccccccc
Q psy8551         301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS  380 (581)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (581)
                      +.  + .+++|+.|++++|...... .+..+++|++|++++|.+.......                     ........
T Consensus       323 p~--~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~---------------------~~~~~~~~  377 (606)
T 3vq2_A          323 PT--L-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCS---------------------YSDLGTNS  377 (606)
T ss_dssp             CC--C-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECC---------------------HHHHCCSC
T ss_pred             cc--C-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchh---------------------hhhccCCc
Confidence            73  4 9999999999999544322 5668899999999999875321000                     00111112


Q ss_pred             CCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccCCccccEEe
Q psy8551         381 LSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE  459 (581)
Q Consensus       381 l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  459 (581)
                      +..  +....+.+..++ ..|.++++|+.|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus       378 L~~--L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          378 LRH--LDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             CCE--EECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             ccE--eECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            222  222333445554 567889999999999999988776 6789999999999999999999999999999999999


Q ss_pred             ecCCCCeeE-ecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCc
Q psy8551         460 ITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENP  537 (581)
Q Consensus       460 l~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np  537 (581)
                      +++| .+.+ ..+..+.++++|++|++++| .+..+++..+.++++|++|++++|+++.+ |..+..+++|++|++++|+
T Consensus       455 l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          455 MAGN-SFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCCC-cCCCcchHHhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            9986 4444 56778999999999999999 77778788899999999999999999976 7788899999999999999


Q ss_pred             ccc
Q psy8551         538 IEC  540 (581)
Q Consensus       538 ~~c  540 (581)
                      ++.
T Consensus       533 l~~  535 (606)
T 3vq2_A          533 IET  535 (606)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            973

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=344.91  Aligned_cols=370  Identities=28%  Similarity=0.398  Sum_probs=251.0

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      ++||..|.|.. ..+.+.|  .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|+|++|.++.+.+..|.
T Consensus         1 ~~Cp~~C~C~~-~~~~v~c--~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~   77 (477)
T 2id5_A            1 TGCPPRCECSA-QDRAVLC--HRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN   77 (477)
T ss_dssp             CCCSTTCEEET-TTTEEEC--CSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CcccCCCeECC-CCCEEEe--CCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhh
Confidence            47999999976 4567999  999999999999999999999999999875 4788888999999988888888777777


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR  169 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  169 (581)
                      ++++|++|++++|.                       ++.++...|.++++|++|++++|.+..+....+..+       
T Consensus        78 ~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-------  127 (477)
T 2id5_A           78 NLFNLRTLGLRSNR-----------------------LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDL-------  127 (477)
T ss_dssp             TCTTCCEEECCSSC-----------------------CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTC-------
T ss_pred             CCccCCEEECCCCc-----------------------CCccCcccccCCCCCCEEECCCCccccCChhHcccc-------
Confidence            77777777777764                       333344445555666666666555555444444444       


Q ss_pred             CCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccc
Q psy8551         170 VGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM  249 (581)
Q Consensus       170 L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~  249 (581)
                                       ++|+.|++++|.++.+.+..|..+++|++|++++|+++.++...+..+++|+.|++++|.+..
T Consensus       128 -----------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          128 -----------------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             -----------------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             -----------------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence                             445555555554444444455555666666666666666665556666777777776665554


Q ss_pred             cCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccccccc
Q psy8551         250 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML  329 (581)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~  329 (581)
                      +....+..+++|+.|++                         ++|...+.+                        +....
T Consensus       191 ~~~~~~~~l~~L~~L~l-------------------------~~~~~~~~~------------------------~~~~~  221 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEI-------------------------SHWPYLDTM------------------------TPNCL  221 (477)
T ss_dssp             ECTTCSCSCTTCCEEEE-------------------------ECCTTCCEE------------------------CTTTT
T ss_pred             eChhhcccCcccceeeC-------------------------CCCcccccc------------------------Ccccc
Confidence            43333333333333322                         222111111                        11100


Q ss_pred             CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCE
Q psy8551         330 AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRS  409 (581)
Q Consensus       330 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~  409 (581)
                      .                                                                         ..+|++
T Consensus       222 ~-------------------------------------------------------------------------~~~L~~  228 (477)
T 2id5_A          222 Y-------------------------------------------------------------------------GLNLTS  228 (477)
T ss_dssp             T-------------------------------------------------------------------------TCCCSE
T ss_pred             c-------------------------------------------------------------------------CccccE
Confidence            0                                                                         124566


Q ss_pred             EEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCC
Q psy8551         410 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP  489 (581)
Q Consensus       410 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~  489 (581)
                      |++++|.++.++...+..+++|++|++++|.++...+..                         |.++++|++|++++| 
T Consensus       229 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-------------------------~~~l~~L~~L~L~~n-  282 (477)
T 2id5_A          229 LSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM-------------------------LHELLRLQEIQLVGG-  282 (477)
T ss_dssp             EEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS-------------------------CTTCTTCCEEECCSS-
T ss_pred             EECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh-------------------------ccccccCCEEECCCC-
Confidence            666666666666666777777777777777666554433                         344555666666666 


Q ss_pred             CceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhh--cCCCceeeCCCcc
Q psy8551         490 KLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVR--RNTSAVFCNSPAP  566 (581)
Q Consensus       490 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~--~~~~~~~c~~~~~  566 (581)
                      .+..+.+..+.++++|++|++++|.++.++.. +..+++|++|++++||+.|+|++.|+.+|...  .....+.|..|..
T Consensus       283 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~  362 (477)
T 2id5_A          283 QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEF  362 (477)
T ss_dssp             CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGG
T ss_pred             ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchH
Confidence            56666667788899999999999999988754 56789999999999999999999999887643  3445678999999


Q ss_pred             cccccccccCcc
Q psy8551         567 LKYKSLISLSAE  578 (581)
Q Consensus       567 ~~~~~~~~~~~~  578 (581)
                      ++|+.+.+++..
T Consensus       363 ~~g~~l~~~~~~  374 (477)
T 2id5_A          363 VQGKEFKDFPDV  374 (477)
T ss_dssp             GTTCBGGGSCSS
T ss_pred             HcCCchhhCccc
Confidence            999999887643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.2e-39  Score=343.65  Aligned_cols=435  Identities=20%  Similarity=0.274  Sum_probs=293.7

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      ..+.++.++..++++|..+  .+++++|++++|.++.++...|.++++|++|++++|.+                     
T Consensus         8 ~~~~~~c~~~~l~~ip~~l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i---------------------   64 (570)
T 2z63_A            8 PNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI---------------------   64 (570)
T ss_dssp             TTTEEECCSSCCSSCCSSS--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCC---------------------
T ss_pred             CCcEEEeCCCCccccCCCc--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcC---------------------
Confidence            3456888888999999754  36899999999999999988999999999999999864                     


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC-c
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS-D  204 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~-~  204 (581)
                        +.+.+.+|+++++|++|++++|.++.+++..|..+++|++|++++|.++.++...+.++++|++|++++|.++.+. +
T Consensus        65 --~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp  142 (570)
T 2z63_A           65 --QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP  142 (570)
T ss_dssp             --CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCC
T ss_pred             --CccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecCh
Confidence              3344444555666666666666665555555555666666666666655555444555666666666666555432 4


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCC----CEEECCCCcccccCCcccCCCcccceeeecCC-----------
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL----EELEIGQNGFSMLEAGCFKGLSYLKRLEITGA-----------  269 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-----------  269 (581)
                      ..+..+++|++|++++|+++.+++..++.+++|    +++++++|.+..+.+..+... .|+.+++.++           
T Consensus       143 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~  221 (570)
T 2z63_A          143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCI  221 (570)
T ss_dssp             GGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHH
T ss_pred             hhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhh
Confidence            445555666666666666655554445555555    556666665555555444433 4555554443           


Q ss_pred             ----------------------------------------------CCceeecCccCCCCCCCCEEeCCCCCCccccccc
Q psy8551         270 ----------------------------------------------SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEG  303 (581)
Q Consensus       270 ----------------------------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  303 (581)
                                                                    ..+....+..+..+++|+.++++++ .+..++. 
T Consensus       222 ~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l~~-  299 (570)
T 2z63_A          222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV-TIERVKD-  299 (570)
T ss_dssp             HTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESC-EECSCCB-
T ss_pred             cCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCc-cchhhhh-
Confidence                                                          1122222334445566666666666 4445544 


Q ss_pred             cccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCc
Q psy8551         304 ALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSA  383 (581)
Q Consensus       304 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  383 (581)
                      .+..+ +|++|++++|.+..+|.  ..+++|+.|++++|.+....                         ....+..+..
T Consensus       300 ~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~~~-------------------------~~~~~~~L~~  351 (570)
T 2z63_A          300 FSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGNAF-------------------------SEVDLPSLEF  351 (570)
T ss_dssp             CCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCCBC-------------------------CCCBCTTCCE
T ss_pred             hhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccccc-------------------------ccccCCCCCE
Confidence            34445 66666666666665554  34566667776666543110                         0011222222


Q ss_pred             cccccCCCCccccC--ccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeecc-ccccCCccccEEee
Q psy8551         384 EDLGCAGAGLTNIS--DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEI  460 (581)
Q Consensus       384 ~~~~~~~~~~~~i~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~l  460 (581)
                      ..+  ..+.+....  ...+.++++|++|++++|.+.+.++. +..+++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus       352 L~l--~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  428 (570)
T 2z63_A          352 LDL--SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  428 (570)
T ss_dssp             EEC--CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred             EeC--cCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence            222  222233222  34567789999999999999888765 8899999999999999988755 56889999999999


Q ss_pred             cCCCCeeEecCCccCCCCCCCeeeCCCCCCc-eeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcc
Q psy8551         461 TGASNLTRVRKGAFADNLNLETLTLNKNPKL-KIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       461 ~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~  538 (581)
                      ++| .+....+..+.++++|++|++++|... +.+ +..+..+++|++|++++|.++.+ |..+..+++|++|++++|++
T Consensus       429 ~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  506 (570)
T 2z63_A          429 SHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFL-PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL  506 (570)
T ss_dssp             TTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEE-CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             cCC-cccccchhhhhcCCcCcEEECcCCcCccccc-hhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcC
Confidence            985 677777888999999999999999433 245 47789999999999999999987 67888999999999999999


Q ss_pred             ccc
Q psy8551         539 ECG  541 (581)
Q Consensus       539 ~c~  541 (581)
                      +..
T Consensus       507 ~~~  509 (570)
T 2z63_A          507 KSV  509 (570)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.5e-39  Score=346.72  Aligned_cols=448  Identities=18%  Similarity=0.212  Sum_probs=337.9

Q ss_pred             CCCcccc---ccCCCccCCCCCCcCccEEEcccCCcc-cccccccCCCcccEEEcCCCceeecCCCCCC------C----
Q psy8551          25 RDPSCNL---QEANLDVIPSHSNPSIQRLVLSTNRIK-TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFE------P----   90 (581)
Q Consensus        25 ~~~~c~~---~~~~l~~ip~~~~~~l~~L~L~~~~i~-~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~------~----   90 (581)
                      ....|.|   .+..+..     ..+++.|+|+++.+. .+|..++++++|++|+|++|.+...+ ..+.      .    
T Consensus        63 ~~~~c~w~~~~GV~C~~-----~~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~-~~~~~~~~~~~~~~~  136 (636)
T 4eco_A           63 NKELDMWGAQPGVSLNS-----NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE-RLFGPKGISANMSDE  136 (636)
T ss_dssp             SSCGGGTTCCTTEEECT-----TCCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTC-CSBSTTSBCTTCCHH
T ss_pred             CCCcccccCCCCeEEcC-----CCCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCC-ccccccccccCchHH
Confidence            4566766   4444432     158999999999997 78889999999999999999752111 0111      0    


Q ss_pred             -CCcccEEeCCCCCCCCcccccccC----------------------Cccccc-ccCcccccccchhhcCCCCCCcEEeC
Q psy8551          91 -QEKLVELQLNHNKHFPQQIVCSII----------------------SPRRVE-IFGQNRISRIDQACFEGLTALRILYL  146 (581)
Q Consensus        91 -l~~L~~L~l~~n~~~~~~~~~~~~----------------------~~~~L~-~l~~~~l~~~~~~~l~~~~~L~~L~l  146 (581)
                       +.+|+ ++++.+.+ ....+..+.                      ..+.+. ....|.++++ +..++++++|++|++
T Consensus       137 ~~~~l~-l~l~~~~l-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~i-p~~l~~l~~L~~L~L  213 (636)
T 4eco_A          137 QKQKMR-MHYQKTFV-DYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV-SKAVMRLTKLRQFYM  213 (636)
T ss_dssp             HHHHHH-THHHHHHT-CCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEE
T ss_pred             HHHHHH-hhHHHhhh-ccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccC-CHHHhcccCCCEEEC
Confidence             12233 33333321 111111110                      111111 1125678884 556999999999999


Q ss_pred             CCCcCcc------------------cCCcccc--cCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-ccc-cCc
Q psy8551         147 DDNQLRS------------------VPTPSFI--YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTN-ISD  204 (581)
Q Consensus       147 ~~~~i~~------------------~~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~-~~~  204 (581)
                      ++|.+++                  +|. .+.  ++++|++|++++|.+.+..+..+.++++|++|++++|+ +++ ..+
T Consensus       214 s~n~l~~~~~~~~~~~~~~~~~~~~ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp  292 (636)
T 4eco_A          214 GNSPFVAENICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK  292 (636)
T ss_dssp             ESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred             cCCccccccccccccccccchhcccCch-hhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence            9999998                  665 677  89999999999999888777889999999999999998 886 455


Q ss_pred             cccCCC------CCCcEEECCCCcCCccCc-cccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecC
Q psy8551         205 NAFRGL------SGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK  277 (581)
Q Consensus       205 ~~l~~~------~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  277 (581)
                      ..+..+      ++|++|++++|+++.+|. ..+..+++|++|++++|.+.+..+ .+..+++|+.|++++| .+..++.
T Consensus       293 ~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N-~l~~lp~  370 (636)
T 4eco_A          293 DDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN-QITEIPA  370 (636)
T ss_dssp             HHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS-EEEECCT
T ss_pred             HHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC-ccccccH
Confidence            555554      899999999999997774 278999999999999999994444 6888999999999987 3444443


Q ss_pred             ccCCCCCC-CCEEeCCCCCCccccccccccCC--CCCcEEecCCCCCcc-cccccc-------CCCCcceEEccCCCCcc
Q psy8551         278 GAFADNLN-LETLTLNKNPKLKTIEEGALVGL--PNLYHLNLKENAFTS-FSESML-------AWPELRTIDIAENPIEC  346 (581)
Q Consensus       278 ~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~l~~-~~~~~~-------~~~~L~~L~l~~~~~~~  346 (581)
                       .+..+++ |++|++++| .++.++. .+...  ++|+.|++++|.++. .|..+.       ..++|++|++++|.+. 
T Consensus       371 -~l~~l~~~L~~L~Ls~N-~l~~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-  446 (636)
T 4eco_A          371 -NFCGFTEQVENLSFAHN-KLKYIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-  446 (636)
T ss_dssp             -TSEEECTTCCEEECCSS-CCSSCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-
T ss_pred             -hhhhhcccCcEEEccCC-cCcccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-
Confidence             4777788 999999999 5667775 45554  489999999999885 444555       6679999999998764 


Q ss_pred             CCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhc
Q psy8551         347 GCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS  426 (581)
Q Consensus       347 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  426 (581)
                                                                      .++...+..+++|++|++++|.++.++...+.
T Consensus       447 ------------------------------------------------~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~  478 (636)
T 4eco_A          447 ------------------------------------------------KFPKELFSTGSPLSSINLMGNMLTEIPKNSLK  478 (636)
T ss_dssp             ------------------------------------------------SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE
T ss_pred             ------------------------------------------------cCCHHHHccCCCCCEEECCCCCCCCcCHHHhc
Confidence                                                            24445566789999999999999988765555


Q ss_pred             CCC-------CCcEeecCCCcceeeccccc-cCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC------CCCce
Q psy8551         427 KLT-------RLEELEIGQNGFSMLEAGCF-KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK------NPKLK  492 (581)
Q Consensus       427 ~l~-------~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~------~~~l~  492 (581)
                      ...       +|++|++++|.++.++...+ ..+++|++|++++| .++. .+..+.++++|++|++++      |...+
T Consensus       479 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~  556 (636)
T 4eco_A          479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR  556 (636)
T ss_dssp             ETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred             cccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCcccc
Confidence            443       99999999999996554333 38999999999995 5655 466778899999999954      53445


Q ss_pred             eecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCccccc
Q psy8551         493 IIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG  541 (581)
Q Consensus       493 ~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~  541 (581)
                      .+ +..+.++++|++|++++|.++.+|..+.  ++|++|++++||+.|.
T Consensus       557 ~~-p~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          557 EW-PEGITLCPSLTQLQIGSNDIRKVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             CC-CTTGGGCSSCCEEECCSSCCCBCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             cC-hHHHhcCCCCCEEECCCCcCCccCHhHh--CcCCEEECcCCCCccc
Confidence            55 5678899999999999999999998765  8999999999999873

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=2.8e-39  Score=356.44  Aligned_cols=478  Identities=22%  Similarity=0.242  Sum_probs=346.9

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCcc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQN  125 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~  125 (581)
                      +..+.++++++.+|.   ..++|++|||++|.++.+.+..|.++++|++|++++|.....-.+..+..+++|+  +++.|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            467889999999997   5689999999999999998889999999999999999642221133445567777  77889


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCC--cccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCcccc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                      .++.+.+..|+++++|++|++++|.+++...  ..+..+++|++|++++|.+.+... ..|.++++|+.|++++|.++..
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            9999989999999999999999999986332  248889999999999999987654 4688999999999999999888


Q ss_pred             CccccCCC--CCCcEEECCCCcCCccCccccCCCCC------CCEEECCCCcccccCCcc--------------------
Q psy8551         203 SDNAFRGL--SGLRSLVLTDNRLQSIPTKQLSKLTR------LEELEIGQNGFSMLEAGC--------------------  254 (581)
Q Consensus       203 ~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~------L~~L~l~~~~~~~~~~~~--------------------  254 (581)
                      .+..+..+  ++|+.|++++|.+....+..+..+++      |++|++++|.+....+..                    
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            77777766  88999999999988755455555554      999999998665332211                    


Q ss_pred             ----------------cCC--CcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEec
Q psy8551         255 ----------------FKG--LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNL  316 (581)
Q Consensus       255 ----------------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  316 (581)
                                      |..  .++|+.|+++++ .+..+.+..+..+++|+.|++++| .+..+....|..+++|+.|++
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSLNSRVFETLKDLKVLNLAYN-KINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEECSCCSSSCCCCCEEEEESC-CCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCC-cccccChhhhhcCCCCCEEECCCC-cCCCCChHHhcCCCCCCEEEC
Confidence                            111  256888888775 456666777888888888888888 567776667888888888888


Q ss_pred             CCCCCccc-cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccc
Q psy8551         317 KENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTN  395 (581)
Q Consensus       317 ~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  395 (581)
                      ++|.++.+ +..+..+++|++|++++|.+.......+ ..+   ..........-.-.......++.  .+....+.+..
T Consensus       322 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~-~~l---~~L~~L~Ls~N~l~~i~~~~~L~--~L~l~~N~l~~  395 (844)
T 3j0a_A          322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTF-KFL---EKLQTLDLRDNALTTIHFIPSIP--DIFLSGNKLVT  395 (844)
T ss_dssp             ESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCS-CSC---CCCCEEEEETCCSCCCSSCCSCS--EEEEESCCCCC
T ss_pred             CCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhh-cCC---CCCCEEECCCCCCCcccCCCCcc--hhccCCCCccc
Confidence            88888766 4567788888888888887653221000 000   00000000000000000011111  11111222222


Q ss_pred             cCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccc-cccCCccccEEeecCCCCee-----E
Q psy8551         396 ISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAG-CFKGLSYLKRLEITGASNLT-----R  468 (581)
Q Consensus       396 i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~l~-----~  468 (581)
                      ++..    ...++.|++++|.+++... ..+..+++|++|++++|.+++..+. .+..+++|+.|++++| .++     .
T Consensus       396 l~~~----~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~~~~~  470 (844)
T 3j0a_A          396 LPKI----NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN-MLQLAWETE  470 (844)
T ss_dssp             CCCC----CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESC-CCSSSCCSC
T ss_pred             cccc----ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCC-ccccccccc
Confidence            2211    3457777777777776543 3356899999999999999876443 4567899999999985 443     3


Q ss_pred             ecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCc
Q psy8551         469 VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       469 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~  543 (581)
                      ..+..|.++++|++|++++| .+..+++..+.++++|++|++++|+++.++..... ++|+.|++++|+++..-+
T Consensus       471 ~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~~~~~  543 (844)
T 3j0a_A          471 LCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLLAPNP  543 (844)
T ss_dssp             CCSSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCCCCCS
T ss_pred             cchhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCCCCCh
Confidence            34456888999999999999 88888888899999999999999999998866555 899999999999976544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=5.4e-38  Score=339.90  Aligned_cols=434  Identities=20%  Similarity=0.250  Sum_probs=313.1

Q ss_pred             cCccEEEcccCCcc-cccccccCCCcccEEEc-CCCceeecCCCCCCCC----Cc--ccEEe------------------
Q psy8551          45 PSIQRLVLSTNRIK-TVDSAIPIYLSLQHVDL-SHTTWLIIPIGGFEPQ----EK--LVELQ------------------   98 (581)
Q Consensus        45 ~~l~~L~L~~~~i~-~l~~~~~~~~~L~~L~l-s~~~l~~~~~~~~~~l----~~--L~~L~------------------   98 (581)
                      .+++.|+|+++.+. .+|+.++++++|++|+| ++|.+....+......    ..  ++.+.                  
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            58999999999997 78889999999999999 8887664421110000    00  00000                  


Q ss_pred             -----CCCCCCCCcccccccCCccccc-ccCcccccccchhhcCCCCCCcEEeCCCCcCcc------------------c
Q psy8551          99 -----LNHNKHFPQQIVCSIISPRRVE-IFGQNRISRIDQACFEGLTALRILYLDDNQLRS------------------V  154 (581)
Q Consensus        99 -----l~~n~~~~~~~~~~~~~~~~L~-~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~------------------~  154 (581)
                           +..+................+. ....|.++.+ +..++++++|+.|++++|.+++                  +
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~I-P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFI-SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEE-CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccch-hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                 0000000000000001111111 1124677775 4568999999999999999988                  6


Q ss_pred             CCcccc--cCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-ccc-cCcccc-------CCCCCCcEEECCCCcC
Q psy8551         155 PTPSFI--YLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTN-ISDNAF-------RGLSGLRSLVLTDNRL  223 (581)
Q Consensus       155 ~~~~~~--~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~-~~~~~l-------~~~~~L~~L~l~~n~l  223 (581)
                      |. .++  ++++|++|+|++|.+.+..+..+.++++|+.|++++|+ +++ ..|..+       ..+++|+.|++++|++
T Consensus       482 P~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          482 NE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             Ch-hhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            65 555  89999999999998887777788899999999999997 775 334333       3456999999999999


Q ss_pred             CccCc-cccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCC-CCEEeCCCCCCccccc
Q psy8551         224 QSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN-LETLTLNKNPKLKTIE  301 (581)
Q Consensus       224 ~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~  301 (581)
                      +.+|. ..+..+++|++|++++|.+..++  .+..+++|+.|++++|. +..++. .+..+++ |+.|++++| .+..++
T Consensus       561 ~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~-l~~lp~-~l~~l~~~L~~L~Ls~N-~L~~lp  635 (876)
T 4ecn_A          561 EEFPASASLQKMVKLGLLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQ-IEEIPE-DFCAFTDQVEGLGFSHN-KLKYIP  635 (876)
T ss_dssp             CBCCCHHHHTTCTTCCEEECTTSCCCBCC--CCCTTSEESEEECCSSC-CSCCCT-TSCEECTTCCEEECCSS-CCCSCC
T ss_pred             CccCChhhhhcCCCCCEEECCCCCcccch--hhcCCCcceEEECcCCc-cccchH-HHhhccccCCEEECcCC-CCCcCc
Confidence            97774 26888999999999999988555  68888999999998874 444443 4677777 999999988 466776


Q ss_pred             cccccCCC--CCcEEecCCCCCcccccccc------CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcc
Q psy8551         302 EGALVGLP--NLYHLNLKENAFTSFSESML------AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPL  373 (581)
Q Consensus       302 ~~~~~~~~--~L~~L~l~~~~l~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  373 (581)
                      . .+...+  +|+.|++++|.+.+.++.+.      ..++|+.|++++|.+.                            
T Consensus       636 ~-~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~----------------------------  686 (876)
T 4ecn_A          636 N-IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ----------------------------  686 (876)
T ss_dssp             S-CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC----------------------------
T ss_pred             h-hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC----------------------------
Confidence            4 455554  48999999998875433222      3458889999888764                            


Q ss_pred             cccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCC-------CCCcEeecCCCcceeecc
Q psy8551         374 KYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL-------TRLEELEIGQNGFSMLEA  446 (581)
Q Consensus       374 ~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l-------~~L~~L~l~~~~i~~~~~  446 (581)
                                           .++...+..+++|+.|++++|.++.++...+...       ++|++|++++|.++.++ 
T Consensus       687 ---------------------~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-  744 (876)
T 4ecn_A          687 ---------------------KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-  744 (876)
T ss_dssp             ---------------------SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-
T ss_pred             ---------------------ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccch-
Confidence                                 3444555668899999999999997776544433       38999999999999654 


Q ss_pred             cccc--CCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC------CCCceeecCCccCCCCCccEEEcCCCcceee
Q psy8551         447 GCFK--GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK------NPKLKIIEEDALVGLPNLYHLNLKENAFTSF  518 (581)
Q Consensus       447 ~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l  518 (581)
                      ..+.  .+++|+.|++++| .+..+ +..+.++++|+.|++++      |...+.+ +..+.++++|++|++++|.++.+
T Consensus       745 ~~l~~~~l~~L~~L~Ls~N-~L~~l-p~~l~~L~~L~~L~Ls~N~~ls~N~l~~~i-p~~l~~L~~L~~L~Ls~N~L~~I  821 (876)
T 4ecn_A          745 DDFRATTLPYLSNMDVSYN-CFSSF-PTQPLNSSQLKAFGIRHQRDAEGNRILRQW-PTGITTCPSLIQLQIGSNDIRKV  821 (876)
T ss_dssp             GGGSTTTCTTCCEEECCSS-CCSSC-CCGGGGCTTCCEEECCCCBCTTCCBCCCCC-CTTGGGCSSCCEEECCSSCCCBC
T ss_pred             HHhhhccCCCcCEEEeCCC-CCCcc-chhhhcCCCCCEEECCCCCCcccccccccC-hHHHhcCCCCCEEECCCCCCCcc
Confidence            4454  8999999999985 55554 56677899999999977      5334444 56788999999999999999999


Q ss_pred             ccccccCCcceEEecCCCccccc
Q psy8551         519 SESMLAWPELRTIDIAENPIECG  541 (581)
Q Consensus       519 ~~~~~~~~~L~~L~l~~np~~c~  541 (581)
                      |..+.  ++|+.|++++||+...
T Consensus       822 p~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          822 DEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             CSCCC--SSSCEEECCSCTTCEE
T ss_pred             CHhhc--CCCCEEECCCCCCCcc
Confidence            98765  7999999999999653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.8e-37  Score=325.77  Aligned_cols=452  Identities=19%  Similarity=0.255  Sum_probs=325.7

Q ss_pred             EEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccCccc
Q psy8551          49 RLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFGQNR  126 (581)
Q Consensus        49 ~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~~~~  126 (581)
                      ..+.+++.++.+|..+.  ++|++|++++|.++.+++..|.++++|++|++++|.+. .-....+...++|+  +++.|.
T Consensus         9 ~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~   85 (549)
T 2z81_A            9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNH   85 (549)
T ss_dssp             EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSC
T ss_pred             eEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCc
Confidence            35778999999998654  89999999999999998889999999999999999862 11112344456666  677888


Q ss_pred             ccccchhhcCCCCCCcEEeCCCCcCcccC-CcccccCccCcEEECCCCc-ceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         127 ISRIDQACFEGLTALRILYLDDNQLRSVP-TPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       127 l~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                      ++++.+..|+++++|++|++++|.++.++ ...+..+++|++|++++|. +..+++..+.++++|+.|++++|.++...+
T Consensus        86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  165 (549)
T 2z81_A           86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS  165 (549)
T ss_dssp             CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence            88888888888888888888888887643 2367788888888888887 566666678888888888888888887777


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccC---CcccCCCcccceeeecCCCCceeec----C
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE---AGCFKGLSYLKRLEITGASNLTRVR----K  277 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~----~  277 (581)
                      ..+..+++|++|++++|.+..++...+..+++|++|++++|.+....   ......++.|+.|++.++. +....    .
T Consensus       166 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~  244 (549)
T 2z81_A          166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV-LTDESFNELL  244 (549)
T ss_dssp             TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE-EEHHHHHHHH
T ss_pred             hhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc-cchhHHHHHH
Confidence            77888888888888888877766544556788888888888877652   2223456778888887753 22211    1


Q ss_pred             ccCCCCCCCCEEeCCCCCCccccc------cccccCCCCCcEEecCCCCCcccc------ccccCCCCcceEEccCCCCc
Q psy8551         278 GAFADNLNLETLTLNKNPKLKTIE------EGALVGLPNLYHLNLKENAFTSFS------ESMLAWPELRTIDIAENPIE  345 (581)
Q Consensus       278 ~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~~L~~L~l~~~~~~  345 (581)
                      ..+..+.+|+.+++++| ....+.      ...+..+++++.+++.++.+....      ..+...++|+.+++++|.+.
T Consensus       245 ~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~  323 (549)
T 2z81_A          245 KLLRYILELSEVEFDDC-TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF  323 (549)
T ss_dssp             GGGGGCTTCCEEEEESC-EEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC
T ss_pred             HHhhhhccccccccccc-cccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc
Confidence            22345678888888887 333321      123456778888888888665432      11223568999999998765


Q ss_pred             cCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccC---ccccCCCCCCCEEEcCCCcCCccCh
Q psy8551         346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNIS---DNAFRGLSGLRSLVLTDNRLQSIPT  422 (581)
Q Consensus       346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~---~~~~~~~~~L~~L~l~~n~l~~~~~  422 (581)
                      .. +..+..                      .+..+...++  ..+.+....   ...+..+++|++|++++|.+++++.
T Consensus       324 ~i-p~~~~~----------------------~l~~L~~L~L--s~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  378 (549)
T 2z81_A          324 LV-PCSFSQ----------------------HLKSLEFLDL--SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK  378 (549)
T ss_dssp             CC-CHHHHH----------------------HCTTCCEEEC--CSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH
T ss_pred             cC-CHHHHh----------------------cCccccEEEc--cCCccccccccchhhhhccccCcEEEccCCccccccc
Confidence            21 111100                      1112222222  222222211   1235678999999999999988753


Q ss_pred             --hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccC
Q psy8551         423 --KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALV  500 (581)
Q Consensus       423 --~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~  500 (581)
                        ..+..+++|++|++++|.++.+ +..+..+++|++|++++| .++.+....   .++|++|++++| .+..++    .
T Consensus       379 ~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N-~l~~l~~~~---~~~L~~L~Ls~N-~l~~~~----~  448 (549)
T 2z81_A          379 TGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSST-GIRVVKTCI---PQTLEVLDVSNN-NLDSFS----L  448 (549)
T ss_dssp             HHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTS-CCSCCCTTS---CTTCSEEECCSS-CCSCCC----C
T ss_pred             chhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCC-Ccccccchh---cCCceEEECCCC-Chhhhc----c
Confidence              5688999999999999999865 445778899999999985 455443322   258999999999 666553    5


Q ss_pred             CCCCccEEEcCCCcceeeccccccCCcceEEecCCCccccc
Q psy8551         501 GLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECG  541 (581)
Q Consensus       501 ~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~  541 (581)
                      .+++|++|++++|+++.+|. ...+++|++|++++|+++..
T Consensus       449 ~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          449 FLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             CCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCC
T ss_pred             cCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCc
Confidence            78999999999999999987 46789999999999999753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.8e-38  Score=327.58  Aligned_cols=431  Identities=18%  Similarity=0.199  Sum_probs=331.9

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI  127 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l  127 (581)
                      ++++++++.++.+|..+.  ++|++|++++|.++.+++..|.++++|++|++++|.                       +
T Consensus         3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-----------------------l   57 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNR-----------------------I   57 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-----------------------C
T ss_pred             ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCc-----------------------c
Confidence            689999999999998765  899999999999999887789999999999999986                       5


Q ss_pred             cccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCccccCccc
Q psy8551         128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNISDNA  206 (581)
Q Consensus       128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~  206 (581)
                      +++.+..|+++++|++|++++|.++.++..   .+++|++|++++|.++++. +..+.++++|++|++++|.++.   ..
T Consensus        58 ~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~  131 (520)
T 2z7x_B           58 QYLDISVFKFNQELEYLDLSHNKLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS  131 (520)
T ss_dssp             CEEEGGGGTTCTTCCEEECCSSCCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG
T ss_pred             CCcChHHhhcccCCCEEecCCCceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh
Confidence            666677899999999999999999988764   7999999999999998753 4578999999999999999876   34


Q ss_pred             cCCCCCC--cEEECCCCcC--CccCccccCCCC-CCCEEECCCCcccc-cCCcccCCCcccceeeecCCCC------cee
Q psy8551         207 FRGLSGL--RSLVLTDNRL--QSIPTKQLSKLT-RLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASN------LTR  274 (581)
Q Consensus       207 l~~~~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~------~~~  274 (581)
                      +..+++|  +.|++++|.+  ....+..+..+. +...+++++|.+.. +....+..++.|+.+++++|..      +..
T Consensus       132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  211 (520)
T 2z7x_B          132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS  211 (520)
T ss_dssp             GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred             ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence            6667777  9999999998  655555666554 23466778877654 4455678899999999988641      111


Q ss_pred             ecCccCCCCCCCCEEeCCCCCCcccc-ccccc--cCCCCCcEEecCCCCCc-cccccc-----cCCCCcceEEccCCCCc
Q psy8551         275 VRKGAFADNLNLETLTLNKNPKLKTI-EEGAL--VGLPNLYHLNLKENAFT-SFSESM-----LAWPELRTIDIAENPIE  345 (581)
Q Consensus       275 ~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~--~~~~~L~~L~l~~~~l~-~~~~~~-----~~~~~L~~L~l~~~~~~  345 (581)
                      ..+ .+..+++|+.+++.++. +... .....  ...++|++|++++|.++ .+|..+     ..++.|+.+++++|.+ 
T Consensus       212 ~~~-~l~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-  288 (520)
T 2z7x_B          212 ILA-KLQTNPKLSNLTLNNIE-TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-  288 (520)
T ss_dssp             HHH-GGGGCTTCCEEEEEEEE-EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-
T ss_pred             chh-hhccccchhhccccccc-cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-
Confidence            112 56778899999998873 3321 11111  12468999999999988 777777     7888999999998877 


Q ss_pred             cCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhh
Q psy8551         346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL  425 (581)
Q Consensus       346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l  425 (581)
                       ..+..++..........                     .+......+..+.  .+..+++|++|++++|.+++..+..+
T Consensus       289 -~~p~~~~~~~~~~~~L~---------------------~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~  344 (520)
T 2z7x_B          289 -GFPQSYIYEIFSNMNIK---------------------NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC  344 (520)
T ss_dssp             -CSCTHHHHHHHHTCCCS---------------------EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC
T ss_pred             -ecchhhhhcccccCcee---------------------EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh
Confidence             22223333322111111                     1111111222221  12568999999999999998777889


Q ss_pred             cCCCCCcEeecCCCcceee--ccccccCCccccEEeecCCCCeeE-ecCCccCCCCCCCeeeCCCCCCceeecCCccCCC
Q psy8551         426 SKLTRLEELEIGQNGFSML--EAGCFKGLSYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVGL  502 (581)
Q Consensus       426 ~~l~~L~~L~l~~~~i~~~--~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l  502 (581)
                      ..+++|++|++++|.++++  .+..+..+++|++|++++| .+.. ++...+..+++|++|++++|...+.++ ..+.  
T Consensus       345 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~l~--  420 (520)
T 2z7x_B          345 GHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF-RCLP--  420 (520)
T ss_dssp             CCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG-GSCC--
T ss_pred             ccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccCccCCEEECcCCCCCcchh-hhhc--
Confidence            9999999999999999974  3466889999999999985 5555 766678889999999999994434443 3332  


Q ss_pred             CCccEEEcCCCcceeeccccccCCcceEEecCCCcccc
Q psy8551         503 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       503 ~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c  540 (581)
                      ++|++|++++|+++.+|..+..+++|++|++++|+++.
T Consensus       421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~  458 (520)
T 2z7x_B          421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKS  458 (520)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCc
Confidence            79999999999999999988899999999999999984

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=2.3e-36  Score=322.26  Aligned_cols=399  Identities=16%  Similarity=0.217  Sum_probs=283.5

Q ss_pred             CCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcC--CCCCCcEEeCCCCcCccc
Q psy8551          77 HTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE--GLTALRILYLDDNQLRSV  154 (581)
Q Consensus        77 ~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~~i~~~  154 (581)
                      +|+++++| ..+.++++|++|++++|.+........... .     ......+..+..++  ++++|++|++++|.+.+.
T Consensus       192 ~n~l~~ip-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~-~-----~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~  264 (636)
T 4eco_A          192 SNNITFVS-KAVMRLTKLRQFYMGNSPFVAENICEAWEN-E-----NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK  264 (636)
T ss_dssp             SCEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCSC-T-----TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred             cCCCccCC-HHHhcccCCCEEECcCCccccccccccccc-c-----ccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence            56788866 468899999999999988522111100000 0     00001111344466  788888888888887765


Q ss_pred             CCcccccCccCcEEECCCCc-cee-ccCCcCCCC------CCCcEEEcCCCCccccCc-cccCCCCCCcEEECCCCcCC-
Q psy8551         155 PTPSFIYLGMLAELRVGLNV-FTT-LADGAFNGL------GRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQ-  224 (581)
Q Consensus       155 ~~~~~~~~~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~-  224 (581)
                      .+..+.++++|++|++++|. +++ ..+..+..+      ++|+.|++++|.++.++. ..+..+++|++|++++|+++ 
T Consensus       265 ~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred             ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc
Confidence            55678888888888888887 775 333344443      788888888888885443 26788888888888888888 


Q ss_pred             ccCccccCCCCCCCEEECCCCcccccCCcccCCCcc-cceeeecCCCCceeecCccCCCC--CCCCEEeCCCCCCccccc
Q psy8551         225 SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY-LKRLEITGASNLTRVRKGAFADN--LNLETLTLNKNPKLKTIE  301 (581)
Q Consensus       225 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~  301 (581)
                      .++  .+..+++|++|++++|.+..++.. +..+++ |+.|++++|. +..++. .+...  ++|+.|++++|. +....
T Consensus       345 ~ip--~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~~L~~L~Ls~N~-l~~lp~-~~~~~~l~~L~~L~Ls~N~-l~~~~  418 (636)
T 4eco_A          345 KLP--AFGSEIKLASLNLAYNQITEIPAN-FCGFTEQVENLSFAHNK-LKYIPN-IFDAKSVSVMSAIDFSYNE-IGSVD  418 (636)
T ss_dssp             ECC--CCEEEEEESEEECCSSEEEECCTT-SEEECTTCCEEECCSSC-CSSCCS-CCCTTCSSCEEEEECCSSC-TTTTT
T ss_pred             chh--hhCCCCCCCEEECCCCccccccHh-hhhhcccCcEEEccCCc-Ccccch-hhhhcccCccCEEECcCCc-CCCcc
Confidence            555  677788888888888888855443 777777 8888888864 444443 34443  378999999984 44433


Q ss_pred             ccccc-------CCCCCcEEecCCCCCcccccccc-CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcc
Q psy8551         302 EGALV-------GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPL  373 (581)
Q Consensus       302 ~~~~~-------~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  373 (581)
                      +..+.       .+++|+.|++++|.++.+|..+. .+++|++|++++|.+..                           
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~---------------------------  471 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE---------------------------  471 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB---------------------------
T ss_pred             hhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC---------------------------
Confidence            33455       67799999999999998887544 58999999999987641                           


Q ss_pred             cccccccCCccccccCCCCccccCccc-------cCCCCCCCEEEcCCCcCCccChhhhc--CCCCCcEeecCCCcceee
Q psy8551         374 KYKSLISLSAEDLGCAGAGLTNISDNA-------FRGLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSML  444 (581)
Q Consensus       374 ~~~~~~~l~~~~~~~~~~~~~~i~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~~~i~~~  444 (581)
                                            ++...       +.++++|+.|++++|.++.++ ..+.  .+++|++|++++|.+++ 
T Consensus       472 ----------------------i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~~~l~~L~~L~Ls~N~l~~-  527 (636)
T 4eco_A          472 ----------------------IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS-DDFRATTLPYLVGIDLSYNSFSK-  527 (636)
T ss_dssp             ----------------------CCSSSSEETTEECTTGGGCCEEECCSSCCCBCC-GGGSTTTCTTCCEEECCSSCCSS-
T ss_pred             ----------------------cCHHHhccccccccccCCccEEECcCCcCCccC-hhhhhccCCCcCEEECCCCCCCC-
Confidence                                  11111       223458999999999999777 4554  89999999999999998 


Q ss_pred             ccccccCCccccEEeecCC-----CCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec
Q psy8551         445 EAGCFKGLSYLKRLEITGA-----SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS  519 (581)
Q Consensus       445 ~~~~~~~~~~L~~L~l~~~-----~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~  519 (581)
                      .+..+..+++|++|++++|     +.+....+..+.++++|++|++++| .++.+|.. +.  ++|++|++++|+++.++
T Consensus       528 ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~-~~--~~L~~L~Ls~N~l~~~~  603 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK-IT--PNISVLDIKDNPNISID  603 (636)
T ss_dssp             CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CC--TTCCEEECCSCTTCEEE
T ss_pred             cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh-Hh--CcCCEEECcCCCCcccc
Confidence            5667888999999999653     3455666778899999999999999 66888754 33  89999999999988655


Q ss_pred             cc-c-c-cCCcceEEecCCCcccccCc
Q psy8551         520 ES-M-L-AWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       520 ~~-~-~-~~~~L~~L~l~~np~~c~c~  543 (581)
                      .. + . ....+..+.....+..++|+
T Consensus       604 ~~~~~~~~~~~~~~l~~~~~~~i~~C~  630 (636)
T 4eco_A          604 LSYVCPYIEAGMYMLFYDKTQDIRGCD  630 (636)
T ss_dssp             CTTTHHHHHTTCCEEECCTTSEEESCG
T ss_pred             HHhcchhhhcccceeecCCccccCCCc
Confidence            21 1 1 11334445555555556666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.5e-35  Score=320.85  Aligned_cols=400  Identities=16%  Similarity=0.192  Sum_probs=297.5

Q ss_pred             CceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcC--CCCCCcEEeCCCCcCcccC
Q psy8551          78 TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFE--GLTALRILYLDDNQLRSVP  155 (581)
Q Consensus        78 ~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~~i~~~~  155 (581)
                      |.++.+| ..+.++++|++|++++|.+....+.....      ..+.+..+...+..++  ++++|++|++++|.+....
T Consensus       435 N~L~~IP-~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~------~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i  507 (876)
T 4ecn_A          435 NRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVDWE------DANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL  507 (876)
T ss_dssp             CEEEEEC-GGGGGCTTCCEEEEESCCCCGGGBSSSCS------CTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC
T ss_pred             Ccccchh-HHHhcCCCCCEEECcCCcCCCCccccccc------ccccccccccCChhhhhccCCCCCEEECcCCCCCccC
Confidence            7788876 46999999999999999863322211110      0111223333455566  8999999999999877665


Q ss_pred             CcccccCccCcEEECCCCc-cee-ccCC-------cCCCCCCCcEEEcCCCCccccCc-cccCCCCCCcEEECCCCcCCc
Q psy8551         156 TPSFIYLGMLAELRVGLNV-FTT-LADG-------AFNGLGRLSALDLRGAGLTNISD-NAFRGLSGLRSLVLTDNRLQS  225 (581)
Q Consensus       156 ~~~~~~~~~L~~L~L~~n~-~~~-~~~~-------~l~~l~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~l~~  225 (581)
                      +..+.++++|++|++++|. +++ ..+.       .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|+++.
T Consensus       508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~  587 (876)
T 4ecn_A          508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH  587 (876)
T ss_dssp             CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCB
T ss_pred             hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCccc
Confidence            6688899999999999997 775 2222       34556699999999999985543 268889999999999999997


Q ss_pred             cCccccCCCCCCCEEECCCCcccccCCcccCCCcc-cceeeecCCCCceeecCccCCCC--CCCCEEeCCCCCCcccccc
Q psy8551         226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY-LKRLEITGASNLTRVRKGAFADN--LNLETLTLNKNPKLKTIEE  302 (581)
Q Consensus       226 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~  302 (581)
                      +|  .+..+++|++|++++|.+..++ ..+..+++ |+.|++++|. +..++ ..+...  ++|+.|++++|...+.++.
T Consensus       588 lp--~~~~L~~L~~L~Ls~N~l~~lp-~~l~~l~~~L~~L~Ls~N~-L~~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          588 LE--AFGTNVKLTDLKLDYNQIEEIP-EDFCAFTDQVEGLGFSHNK-LKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             CC--CCCTTSEESEEECCSSCCSCCC-TTSCEECTTCCEEECCSSC-CCSCC-SCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             ch--hhcCCCcceEEECcCCccccch-HHHhhccccCCEEECcCCC-CCcCc-hhhhccccCCCCEEECcCCcCCCcccc
Confidence            77  6888999999999999988544 34778888 9999999875 44444 344444  3499999999954433332


Q ss_pred             c--ccc--CCCCCcEEecCCCCCcccccccc-CCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccc
Q psy8551         303 G--ALV--GLPNLYHLNLKENAFTSFSESML-AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS  377 (581)
Q Consensus       303 ~--~~~--~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  377 (581)
                      .  .+.  .+++|+.|++++|.++.+|..+. .+++|+.|++++|.+..                               
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~-------------------------------  711 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTS-------------------------------  711 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSC-------------------------------
T ss_pred             chhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCc-------------------------------
Confidence            1  122  44589999999999999887655 78999999999997641                               


Q ss_pred             cccCCccccccCCCCccccCccc-------cCCCCCCCEEEcCCCcCCccChhhhc--CCCCCcEeecCCCcceeecccc
Q psy8551         378 LISLSAEDLGCAGAGLTNISDNA-------FRGLSGLRSLVLTDNRLQSIPTKQLS--KLTRLEELEIGQNGFSMLEAGC  448 (581)
Q Consensus       378 ~~~l~~~~~~~~~~~~~~i~~~~-------~~~~~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~~~i~~~~~~~  448 (581)
                                        ++...       +.++++|+.|++++|.++.++ ..+.  .+++|+.|++++|.++++ +..
T Consensus       712 ------------------ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp-~~l~~~~l~~L~~L~Ls~N~L~~l-p~~  771 (876)
T 4ecn_A          712 ------------------IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLS-DDFRATTLPYLSNMDVSYNCFSSF-PTQ  771 (876)
T ss_dssp             ------------------CCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCC-GGGSTTTCTTCCEEECCSSCCSSC-CCG
T ss_pred             ------------------cChHHhccccccccccCCccEEECCCCCCccch-HHhhhccCCCcCEEEeCCCCCCcc-chh
Confidence                              11111       223458999999999999777 4555  899999999999999985 666


Q ss_pred             ccCCccccEEeecCC-----CCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec-ccc
Q psy8551         449 FKGLSYLKRLEITGA-----SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESM  522 (581)
Q Consensus       449 ~~~~~~L~~L~l~~~-----~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~  522 (581)
                      +..+++|+.|++++|     +.+....+..+.++++|++|++++| .++.+|.. +.  ++|+.|+|++|++..+. ..+
T Consensus       772 l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~-l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEK-LT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             GGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC-CC--SSSCEEECCSCTTCEEECGGG
T ss_pred             hhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCccCHh-hc--CCCCEEECCCCCCCccChHHc
Confidence            889999999999873     3455666778899999999999999 66888755 33  69999999999998765 333


Q ss_pred             ccCCcceEEecCCCcccc--cCch
Q psy8551         523 LAWPELRTIDIAENPIEC--GCNI  544 (581)
Q Consensus       523 ~~~~~L~~L~l~~np~~c--~c~~  544 (581)
                      .....+..+.+.+|++.+  +|+.
T Consensus       848 ~~~~~~~~~~L~~n~~~~I~gC~~  871 (876)
T 4ecn_A          848 CPYIEAGMYVLLYDKTQDIRGCDA  871 (876)
T ss_dssp             HHHHHTTCCEEECCTTSEEESCGG
T ss_pred             cccccchheeecCCCccccCCCCC
Confidence            333455667777777765  7764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.7e-34  Score=308.86  Aligned_cols=456  Identities=23%  Similarity=0.267  Sum_probs=288.6

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCC--CCcccccccCCccccc--ccC
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKH--FPQQIVCSIISPRRVE--IFG  123 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~--~l~  123 (581)
                      ...+-++-+++.+|..+.  +++++|||++|+|+.++..+|.++++|++|++++|.+  +++.++..   +++|+  +|+
T Consensus        34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~---L~~L~~L~Ls  108 (635)
T 4g8a_A           34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS---LSHLSTLILT  108 (635)
T ss_dssp             TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT---CTTCCEEECT
T ss_pred             CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcC---CCCCCEEEcc
Confidence            345677778889997553  5899999999999999999999999999999999975  22222222   23333  444


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCcccc
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                      .|.++.+++..|+++++|++|++++|+++.++...|+++++|++|++++|.++.+. +..+..+++|++|++++|+++.+
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  188 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  188 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccc
Confidence            55555555555555555555555555555555444555555555555555554332 22344455555555555555544


Q ss_pred             CccccCCCC----CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccc-cCCcccCCCc------------------
Q psy8551         203 SDNAFRGLS----GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCFKGLS------------------  259 (581)
Q Consensus       203 ~~~~l~~~~----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~------------------  259 (581)
                      .+..+..+.    ....++++.|.++.+++..+.. ..++.+++.+|.... .....+..+.                  
T Consensus       189 ~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l  267 (635)
T 4g8a_A          189 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL  267 (635)
T ss_dssp             CGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhcccccccccchhhcCCccccccccccccccccccc
Confidence            444333222    1224455555555444332222 223344443332110 0000000111                  


Q ss_pred             ---------------------------------------ccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcccc
Q psy8551         260 ---------------------------------------YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI  300 (581)
Q Consensus       260 ---------------------------------------~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  300 (581)
                                                             .++.+.+.++. +  .....+....+++.+++.++ .+..+
T Consensus       268 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~--~~~~~~~~~~~L~~L~l~~~-~~~~~  343 (635)
T 4g8a_A          268 EKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT-I--ERVKDFSYNFGWQHLELVNC-KFGQF  343 (635)
T ss_dssp             SCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCE-E--EECGGGGSCCCCSEEEEESC-EESSC
T ss_pred             ccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccc-c--ccccccccchhhhhhhcccc-cccCc
Confidence                                                   11111111110 0  01112334567888888887 45554


Q ss_pred             ccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccccccccc
Q psy8551         301 EEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLIS  380 (581)
Q Consensus       301 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (581)
                      +.   ..++.++.+++..+.....+. ...+++|+.+++++|.+........                     .......
T Consensus       344 ~~---~~l~~L~~l~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~---------------------~~~~~~~  398 (635)
T 4g8a_A          344 PT---LKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQ---------------------SDFGTIS  398 (635)
T ss_dssp             CC---CBCTTCCEEEEESCCSCCBCC-CCBCTTCCEEECCSSCCBEEEECCH---------------------HHHSCSC
T ss_pred             Cc---ccchhhhhcccccccCCCCcc-cccccccccchhhcccccccccccc---------------------chhhhhh
Confidence            43   356788999999887765443 3468999999999997742211100                     0000111


Q ss_pred             CCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCcc-ChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEe
Q psy8551         381 LSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI-PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE  459 (581)
Q Consensus       381 l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  459 (581)
                      +.  .+.........+ ...+..++.|+.+++.++..... +...+..+++++.++++.|.+....+..+..+++|+.|+
T Consensus       399 L~--~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~  475 (635)
T 4g8a_A          399 LK--YLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK  475 (635)
T ss_dssp             CC--EEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             hh--hhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhh
Confidence            11  111122222222 23466789999999998876543 335678899999999999999999999999999999999


Q ss_pred             ecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcc
Q psy8551         460 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPI  538 (581)
Q Consensus       460 l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~  538 (581)
                      +++|.....+.+..|..+++|++|++++| .+..+++..|.++++|++|+|++|+|++++. .+..+++|++|++++|++
T Consensus       476 Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l  554 (635)
T 4g8a_A          476 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  554 (635)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCC
T ss_pred             hhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcC
Confidence            99987777777888999999999999999 8888888999999999999999999998864 577899999999999999


Q ss_pred             cccC
Q psy8551         539 ECGC  542 (581)
Q Consensus       539 ~c~c  542 (581)
                      +..-
T Consensus       555 ~~~~  558 (635)
T 4g8a_A          555 MTSK  558 (635)
T ss_dssp             CBCC
T ss_pred             CCCC
Confidence            7643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=7.6e-35  Score=307.38  Aligned_cols=432  Identities=18%  Similarity=0.174  Sum_probs=317.9

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      ..+++++++++++.+|..+.  ++|++|++++|.++.+++..|.++++|++|++++|.                      
T Consensus        32 ~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~----------------------   87 (562)
T 3a79_B           32 LESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR----------------------   87 (562)
T ss_dssp             -CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC----------------------
T ss_pred             CCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCC----------------------
Confidence            44899999999999998654  899999999999999998889999999999999986                      


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceecc-CCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLA-DGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                       ++.+.+.+|+++++|++|++++|.++.++..   .+++|++|++++|.+++++ +..+.++++|++|++++|.++... 
T Consensus        88 -l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-  162 (562)
T 3a79_B           88 -IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-  162 (562)
T ss_dssp             -CCEECTTTTTTCTTCCEEECTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-
T ss_pred             -CCcCCHHHhCCCCCCCEEECCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc-
Confidence             5667777899999999999999999998874   7899999999999999865 357899999999999999887643 


Q ss_pred             cccCCCCCC--cEEECCCCcC--CccCccccCCCC-CCCEEECCCCcccc-cCCcccCCCcccceeeecCCCCc-eee--
Q psy8551         205 NAFRGLSGL--RSLVLTDNRL--QSIPTKQLSKLT-RLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASNL-TRV--  275 (581)
Q Consensus       205 ~~l~~~~~L--~~L~l~~n~l--~~~~~~~~~~l~-~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~-~~~--  275 (581)
                        +..+++|  +.|++++|.+  +...+..+..+. ..-.++++.|.+.. .....+..++.|+.+++.++... ..+  
T Consensus       163 --~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~  240 (562)
T 3a79_B          163 --LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT  240 (562)
T ss_dssp             --TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH
T ss_pred             --hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH
Confidence              4444555  9999999998  666656666544 12256777777664 33344667888999999876311 000  


Q ss_pred             cCccCCCCCCCCEEeCCCCCCccc-----cccccccCCCCCcEEecCCCCCc-cccccc-----cCCCCcceEEccCCCC
Q psy8551         276 RKGAFADNLNLETLTLNKNPKLKT-----IEEGALVGLPNLYHLNLKENAFT-SFSESM-----LAWPELRTIDIAENPI  344 (581)
Q Consensus       276 ~~~~~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-----~~~~~L~~L~l~~~~~  344 (581)
                      ....+...++++.+++.++. +..     ++.  ....++|++|++++|.++ .+|..+     ..++.|+.+++..+.+
T Consensus       241 ~~~~l~~l~~L~~L~L~~~~-l~~~~~~~~~~--~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~  317 (562)
T 3a79_B          241 FLSELTRGPTLLNVTLQHIE-TTWKCSVKLFQ--FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF  317 (562)
T ss_dssp             HHHHHHSCSSCEEEEEEEEE-ECHHHHHHHHH--HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC
T ss_pred             HHHHHhccCcceEEEecCCc-CcHHHHHHHHH--hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee
Confidence            01234556677777776652 221     221  123358888888888887 666655     4555555555555554


Q ss_pred             ccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhh
Q psy8551         345 ECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQ  424 (581)
Q Consensus       345 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~  424 (581)
                        ..+..++........                     ...+......+..+.  ....+++|++|++++|.+++..+..
T Consensus       318 --~~p~~~~~~~~~~~~---------------------L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~  372 (562)
T 3a79_B          318 --LFSKEALYSVFAEMN---------------------IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQG  372 (562)
T ss_dssp             --SSCHHHHHHHHHTCC---------------------CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTT
T ss_pred             --ecChhhhhhhhccCc---------------------ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhh
Confidence              222233332221111                     111111111111111  1256899999999999999877788


Q ss_pred             hcCCCCCcEeecCCCcceeec--cccccCCccccEEeecCCCCeeE-ecCCccCCCCCCCeeeCCCCCCceeecCCccCC
Q psy8551         425 LSKLTRLEELEIGQNGFSMLE--AGCFKGLSYLKRLEITGASNLTR-VRKGAFADNLNLETLTLNKNPKLKIIEEDALVG  501 (581)
Q Consensus       425 l~~l~~L~~L~l~~~~i~~~~--~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  501 (581)
                      +..+++|++|++++|.+++..  +..+..+++|++|++++| .++. ++...+..+++|++|++++|...+.+ +..+. 
T Consensus       373 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~-  449 (562)
T 3a79_B          373 CSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLP-  449 (562)
T ss_dssp             CCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCC-
T ss_pred             hcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhc-
Confidence            999999999999999999754  456889999999999995 4555 77777889999999999999433433 33232 


Q ss_pred             CCCccEEEcCCCcceeeccccccCCcceEEecCCCcccc
Q psy8551         502 LPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       502 l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c  540 (581)
                       ++|++|++++|+++.+|..+..+++|++|++++|+++.
T Consensus       450 -~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~  487 (562)
T 3a79_B          450 -PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS  487 (562)
T ss_dssp             -TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCC
T ss_pred             -CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCC
Confidence             79999999999999999988899999999999999973

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1e-33  Score=284.88  Aligned_cols=339  Identities=19%  Similarity=0.286  Sum_probs=252.2

Q ss_pred             CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEE
Q psy8551         138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLV  217 (581)
Q Consensus       138 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  217 (581)
                      +++++.++++++.+..++...+..+++|++|++++|.++.+++..+..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            57888999999888888887788888999999999988888877888888999999999888888887788888899999


Q ss_pred             CCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCc
Q psy8551         218 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL  297 (581)
Q Consensus       218 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (581)
                      +++|+++.++...+..+++|++|++++|.+..+.+..+..+++|+.|++++|                          .+
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n--------------------------~l  177 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN--------------------------RL  177 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS--------------------------CC
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC--------------------------cC
Confidence            9998888888777788888889998888887776666666666666666554                          22


Q ss_pred             cccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccc
Q psy8551         298 KTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS  377 (581)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  377 (581)
                      +.++   +..+++|+.+++++|.++.++    ..+.|++|++++|.+..                               
T Consensus       178 ~~~~---~~~l~~L~~L~l~~n~l~~~~----~~~~L~~L~l~~n~l~~-------------------------------  219 (390)
T 3o6n_A          178 THVD---LSLIPSLFHANVSYNLLSTLA----IPIAVEELDASHNSINV-------------------------------  219 (390)
T ss_dssp             SBCC---GGGCTTCSEEECCSSCCSEEE----CCSSCSEEECCSSCCCE-------------------------------
T ss_pred             Cccc---cccccccceeecccccccccC----CCCcceEEECCCCeeee-------------------------------
Confidence            2221   334455666666666555432    22456666666665431                               


Q ss_pred             cccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccE
Q psy8551         378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR  457 (581)
Q Consensus       378 ~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  457 (581)
                                        ++.   ...++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus       220 ------------------~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  276 (390)
T 3o6n_A          220 ------------------VRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  276 (390)
T ss_dssp             ------------------EEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             ------------------ccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence                              000   1135677777777777765  35777888888888888888777777888888888


Q ss_pred             EeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCc
Q psy8551         458 LEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENP  537 (581)
Q Consensus       458 L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np  537 (581)
                      |++++| .++.++ ..+..+++|++|++++| .+..+++ .+..+++|++|++++|.++.++  +..+++|++|++++||
T Consensus       277 L~L~~n-~l~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          277 LYISNN-RLVALN-LYGQPIPTLKVLDLSHN-HLLHVER-NQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             EECCSS-CCCEEE-CSSSCCTTCCEEECCSS-CCCCCGG-GHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC
T ss_pred             EECCCC-cCcccC-cccCCCCCCCEEECCCC-cceecCc-cccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC
Confidence            888874 555553 33467889999999999 7777754 4678899999999999999886  6788999999999999


Q ss_pred             ccccCchhHHHHHHhhc-CCCceeeCCCccccc
Q psy8551         538 IECGCNILWLREMLVRR-NTSAVFCNSPAPLKY  569 (581)
Q Consensus       538 ~~c~c~~~~~~~~~~~~-~~~~~~c~~~~~~~~  569 (581)
                      +.|+|..+|+..|.+.. ......|..+....+
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~  383 (390)
T 3o6n_A          351 WDCNSLRALFRNVARPAVDDADQHCKIDYQLEH  383 (390)
T ss_dssp             EEHHHHHHHTTTCCTTTBCCCCSCCCTTCEEET
T ss_pred             ccchhHHHHHHHHHhhcccccCceecccccccc
Confidence            99998877777666543 333345776655444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=3.2e-33  Score=287.75  Aligned_cols=348  Identities=27%  Similarity=0.408  Sum_probs=250.7

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      ++++.|++.++.+..+|. +..+++|++|++++|.++.++.  +..+++|++|++++|.+                    
T Consensus        46 ~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l--------------------  102 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--------------------  102 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred             ccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcc--------------------
Confidence            688888888888888875 7788888999998888888775  78888888888888753                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         ..+.+  ++++++|++|++++|.++.++.  +..+++|++|++++|.+..++  .+..+++|+.|+++ +.+.... 
T Consensus       103 ---~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~-  171 (466)
T 1o6v_A          103 ---ADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK-  171 (466)
T ss_dssp             ---CCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG-
T ss_pred             ---ccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch-
Confidence               33333  7788888888888888887754  777888888888888877664  37788888888885 3444333 


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  284 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (581)
                       .+..+++|+.|++++|.++.++  .+..+++|++|++++|.+....+  +..++                         
T Consensus       172 -~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~-------------------------  221 (466)
T 1o6v_A          172 -PLANLTTLERLDISSNKVSDIS--VLAKLTNLESLIATNNQISDITP--LGILT-------------------------  221 (466)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG--GGGCT-------------------------
T ss_pred             -hhccCCCCCEEECcCCcCCCCh--hhccCCCCCEEEecCCccccccc--ccccC-------------------------
Confidence             3677788888888888877764  36777788888888777665433  33344                         


Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA  364 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~  364 (581)
                      +|+.|++++| .+..++  .+..+++|+.|++++|.++.+++ +..+++|++|++++|.+..                  
T Consensus       222 ~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~------------------  279 (466)
T 1o6v_A          222 NLDELSLNGN-QLKDIG--TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN------------------  279 (466)
T ss_dssp             TCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC------------------
T ss_pred             CCCEEECCCC-Ccccch--hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCCccCc------------------
Confidence            4555555555 333332  35666777777777777766554 5667777777777775531                  


Q ss_pred             eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551         365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  444 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  444 (581)
                                                     +.  .+..+++|+.|++++|.+++.++  +..+++|++|++++|.+++.
T Consensus       280 -------------------------------~~--~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          280 -------------------------------IS--PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             -------------------------------CG--GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC
T ss_pred             -------------------------------cc--cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc
Confidence                                           11  14456778888888887777654  67788888888888887776


Q ss_pred             ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc
Q psy8551         445 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES  521 (581)
Q Consensus       445 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~  521 (581)
                      .+  +..+++|++|++++| .++..  ..+.++++|+.|++++| .+..+++  +..+++|++|++++|.++.+|..
T Consensus       325 ~~--~~~l~~L~~L~l~~n-~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~~~~~p~~  393 (466)
T 1o6v_A          325 SP--VSSLTKLQRLFFYNN-KVSDV--SSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQAWTNAPVN  393 (466)
T ss_dssp             GG--GGGCTTCCEEECCSS-CCCCC--GGGTTCTTCCEEECCSS-CCCBCGG--GTTCTTCCEEECCCEEEECCCBC
T ss_pred             hh--hccCccCCEeECCCC-ccCCc--hhhccCCCCCEEeCCCC-ccCccch--hhcCCCCCEEeccCCcccCCchh
Confidence            55  667788888888775 45444  35778888999999988 5555544  78889999999999988876543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.8e-33  Score=298.32  Aligned_cols=120  Identities=23%  Similarity=0.298  Sum_probs=84.2

Q ss_pred             CCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCee
Q psy8551         404 LSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETL  483 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L  483 (581)
                      +++|+.|++++|.+++..+..+..+++|++|++++|.+++++                          ..+..+++|+.|
T Consensus       253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~--------------------------~~~~~l~~L~~L  306 (597)
T 3oja_B          253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN--------------------------LYGQPIPTLKVL  306 (597)
T ss_dssp             CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE--------------------------CSSSCCTTCCEE
T ss_pred             CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC--------------------------cccccCCCCcEE
Confidence            445555555555555544445555555555555555444332                          223456788888


Q ss_pred             eCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCchhHHHHHHhh
Q psy8551         484 TLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVR  553 (581)
Q Consensus       484 ~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~  553 (581)
                      ++++| .+..++ ..+..+++|++|++++|.++.++  +..+++|++|++++|||.|+|...|+..|...
T Consensus       307 ~Ls~N-~l~~i~-~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~~  372 (597)
T 3oja_B          307 DLSHN-HLLHVE-RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARP  372 (597)
T ss_dssp             ECCSS-CCCCCG-GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHHHHHHHTTTCCTT
T ss_pred             ECCCC-CCCccC-cccccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCChhHHHHHHHHhhh
Confidence            88888 666775 44678999999999999999886  67789999999999999999987777666544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.9e-33  Score=283.59  Aligned_cols=246  Identities=21%  Similarity=0.266  Sum_probs=127.7

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcc-------------cEEeCCCCCCCCccccc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL-------------VELQLNHNKHFPQQIVC  111 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L-------------~~L~l~~n~~~~~~~~~  111 (581)
                      .++++|++++|.++.+|..++++++|++|++++|.+.+..+..+..+++|             ++|++++|.+       
T Consensus        11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l-------   83 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL-------   83 (454)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC-------
T ss_pred             ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc-------
Confidence            68999999999999999999999999999999999886556678888776             7777777653       


Q ss_pred             ccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcE
Q psy8551         112 SIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA  191 (581)
Q Consensus       112 ~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  191 (581)
                                      ++++.    -.++|++|++++|.+++++.    ...+|++|++++|.+++++.  +  .++|++
T Consensus        84 ----------------~~lp~----~~~~L~~L~l~~n~l~~lp~----~~~~L~~L~l~~n~l~~l~~--~--~~~L~~  135 (454)
T 1jl5_A           84 ----------------SSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEY  135 (454)
T ss_dssp             ----------------SCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCE
T ss_pred             ----------------ccCCC----CcCCCCEEEccCCcCCcccc----ccCCCcEEECCCCccCcccC--C--CCCCCE
Confidence                            22221    12456666666666655443    12556666666665554332  1  145666


Q ss_pred             EEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCC
Q psy8551         192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN  271 (581)
Q Consensus       192 L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  271 (581)
                      |++++|.++.++  .+..+++|++|++++|++++++. .   .++|++|++++|.+..++  .+..+++|+.|++++|. 
T Consensus       136 L~L~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~-  206 (454)
T 1jl5_A          136 LGVSNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLPD-L---PPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNS-  206 (454)
T ss_dssp             EECCSSCCSSCC--CCTTCTTCCEEECCSSCCSCCCC-C---CTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSC-
T ss_pred             EECcCCCCCCCc--ccCCCCCCCEEECCCCcCcccCC-C---cccccEEECcCCcCCcCc--cccCCCCCCEEECCCCc-
Confidence            666666655543  35556666666666666655542 1   135666666666655543  25556666666665542 


Q ss_pred             ceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551         272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI  344 (581)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  344 (581)
                      +..++..    ..+|++|++++| .+..++.  +..+++|+.|++++|.++.+|..   .++|++|++++|.+
T Consensus       207 l~~l~~~----~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l  269 (454)
T 1jl5_A          207 LKKLPDL----PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYL  269 (454)
T ss_dssp             CSSCCCC----CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCC
T ss_pred             CCcCCCC----cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcc
Confidence            2222211    135666666666 4445542  55666666666666666655542   25666666666654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.9e-32  Score=281.91  Aligned_cols=353  Identities=20%  Similarity=0.301  Sum_probs=241.2

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI  127 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l  127 (581)
                      +.++.+++.++.+|.   -.++|++|++++|.++.+++..|.++++|++|++++|.+                      .
T Consensus        13 ~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~----------------------~   67 (455)
T 3v47_A           13 YNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP----------------------G   67 (455)
T ss_dssp             TEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCST----------------------T
T ss_pred             cccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcc----------------------c
Confidence            356666777777765   226677777777777766666666666666666666542                      1


Q ss_pred             cccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc--c
Q psy8551         128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD--N  205 (581)
Q Consensus       128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~--~  205 (581)
                      ..+.+..|.++++                        |++|++++|.++++.+..+.++++|++|++++|.+++..+  .
T Consensus        68 ~~i~~~~~~~l~~------------------------L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  123 (455)
T 3v47_A           68 LVIRNNTFRGLSS------------------------LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGN  123 (455)
T ss_dssp             CEECTTTTTTCTT------------------------CCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSS
T ss_pred             ceECccccccccc------------------------CCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcc
Confidence            1222333444444                        4555555555444444455555666666666665554222  2


Q ss_pred             ccCCCCCCcEEECCCCcCCccCccc-cCCCCCCCEEECCCCcccccCCcccCCC--cccceeeecCCCCceeecCccCCC
Q psy8551         206 AFRGLSGLRSLVLTDNRLQSIPTKQ-LSKLTRLEELEIGQNGFSMLEAGCFKGL--SYLKRLEITGASNLTRVRKGAFAD  282 (581)
Q Consensus       206 ~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~  282 (581)
                      .+..+++|++|++++|+++++.+.. +..+++|++|++++|.+....+..+..+  ..++.+                  
T Consensus       124 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L------------------  185 (455)
T 3v47_A          124 FFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL------------------  185 (455)
T ss_dssp             TTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE------------------
T ss_pred             cccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc------------------
Confidence            3667788888888888888775443 7888999999999998887666555433  334444                  


Q ss_pred             CCCCCEEeCCCCCCccccccc--------cccCCCCCcEEecCCCCCcc-cccccc---CCCCcceEEccCCCCccCCch
Q psy8551         283 NLNLETLTLNKNPKLKTIEEG--------ALVGLPNLYHLNLKENAFTS-FSESML---AWPELRTIDIAENPIECGCNI  350 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~l~~-~~~~~~---~~~~L~~L~l~~~~~~~~~~~  350 (581)
                             +++++ .+..++..        .+..+++|+.|++++|.++. .+..+.   ..++++.+++++|.....   
T Consensus       186 -------~l~~n-~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---  254 (455)
T 3v47_A          186 -------RLSSI-TLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS---  254 (455)
T ss_dssp             -------ECTTC-BCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSC---
T ss_pred             -------ccccC-cccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccc---
Confidence                   44444 23332221        23456788888888888773 333332   236778888777643210   


Q ss_pred             hhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhc--CC
Q psy8551         351 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS--KL  428 (581)
Q Consensus       351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~--~l  428 (581)
                                                                                  .+..+.+.......+.  ..
T Consensus       255 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~  274 (455)
T 3v47_A          255 ------------------------------------------------------------SFGHTNFKDPDNFTFKGLEA  274 (455)
T ss_dssp             ------------------------------------------------------------CTTCCSSCCCCTTTTGGGTT
T ss_pred             ------------------------------------------------------------ccchhhhccCcccccccccc
Confidence                                                                        0111122222222222  34


Q ss_pred             CCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEE
Q psy8551         429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL  508 (581)
Q Consensus       429 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L  508 (581)
                      ++|++|++++|.+.+..+..+..+++|++|++++ +.+..+.+..|.++++|++|++++| .++.+++..+.++++|++|
T Consensus       275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  352 (455)
T 3v47_A          275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL  352 (455)
T ss_dssp             SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred             cCceEEEecCccccccchhhcccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence            7899999999999999999999999999999998 5788888889999999999999999 7888878889999999999


Q ss_pred             EcCCCcceee-ccccccCCcceEEecCCCcccc
Q psy8551         509 NLKENAFTSF-SESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       509 ~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c  540 (581)
                      ++++|.++.+ |..+..+++|++|++++|+++.
T Consensus       353 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  385 (455)
T 3v47_A          353 DLSYNHIRALGDQSFLGLPNLKELALDTNQLKS  385 (455)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred             ECCCCcccccChhhccccccccEEECCCCcccc
Confidence            9999999987 6778899999999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.8e-32  Score=282.24  Aligned_cols=346  Identities=24%  Similarity=0.371  Sum_probs=272.8

Q ss_pred             CCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEe
Q psy8551          66 IYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY  145 (581)
Q Consensus        66 ~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~  145 (581)
                      .++++++|+++++.++.++  .+..+++|++|++++|.+                       +.+++  ++++++|++|+
T Consensus        44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l-----------------------~~~~~--~~~l~~L~~L~   96 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL-----------------------TDITP--LKNLTKLVDIL   96 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCC-----------------------CCCGG--GTTCTTCCEEE
T ss_pred             HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCcc-----------------------CCchh--hhccccCCEEE
Confidence            4678889999988888776  377788888888888753                       33333  67788888888


Q ss_pred             CCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCc
Q psy8551         146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS  225 (581)
Q Consensus       146 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  225 (581)
                      +++|.+..++.  +..+++|++|++++|.++++++  +..+++|++|++++|.+..+.  .+..+++|++|++. +.+..
T Consensus        97 l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~  169 (466)
T 1o6v_A           97 MNNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTD  169 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCC
T ss_pred             CCCCccccChh--hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccC
Confidence            88888887764  7778888888888888777654  777888888888888777654  36777788888875 34444


Q ss_pred             cCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccc
Q psy8551         226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL  305 (581)
Q Consensus       226 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  305 (581)
                      ++  .+..+++|++|++++|.+..+.                           .+..+++|++|++++| .+..+..  +
T Consensus       170 ~~--~~~~l~~L~~L~l~~n~l~~~~---------------------------~l~~l~~L~~L~l~~n-~l~~~~~--~  217 (466)
T 1o6v_A          170 LK--PLANLTTLERLDISSNKVSDIS---------------------------VLAKLTNLESLIATNN-QISDITP--L  217 (466)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCG---------------------------GGGGCTTCSEEECCSS-CCCCCGG--G
T ss_pred             ch--hhccCCCCCEEECcCCcCCCCh---------------------------hhccCCCCCEEEecCC-ccccccc--c
Confidence            43  2667777777777777654321                           1344567777777777 4555543  6


Q ss_pred             cCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccc
Q psy8551         306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED  385 (581)
Q Consensus       306 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  385 (581)
                      +.+++|+.|++++|.++.++ .+..+++|++|++++|.+..                                       
T Consensus       218 ~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~---------------------------------------  257 (466)
T 1o6v_A          218 GILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN---------------------------------------  257 (466)
T ss_dssp             GGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC---------------------------------------
T ss_pred             cccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcccc---------------------------------------
Confidence            77899999999999998874 57788999999999997642                                       


Q ss_pred             cccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCC
Q psy8551         386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN  465 (581)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  465 (581)
                                +.  .+.++++|++|++++|.+++.++  +..+++|++|++++|.+++..+  +..+++|++|++++| .
T Consensus       258 ----------~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n-~  320 (466)
T 1o6v_A          258 ----------LA--PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN-N  320 (466)
T ss_dssp             ----------CG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSS-C
T ss_pred             ----------ch--hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCC-c
Confidence                      11  15668999999999999998875  8899999999999999998765  788999999999996 5


Q ss_pred             eeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccc
Q psy8551         466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       466 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c  540 (581)
                      +.+..+  +..+++|++|++++| .+..++  .+.++++|++|++++|.++++++ +..+++|++|++++|+++.
T Consensus       321 l~~~~~--~~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          321 ISDISP--VSSLTKLQRLFFYNN-KVSDVS--SLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CSCCGG--GGGCTTCCEEECCSS-CCCCCG--GGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             CCCchh--hccCccCCEeECCCC-ccCCch--hhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            655544  678999999999999 677663  58899999999999999998876 8889999999999999976

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=2.6e-31  Score=270.85  Aligned_cols=383  Identities=21%  Similarity=0.237  Sum_probs=197.6

Q ss_pred             ccCCCccCCCCCC--cCccEEEcccCCcc-cccccccCCCcc-------------cEEEcCCCceeecCCCCCCCCCccc
Q psy8551          32 QEANLDVIPSHSN--PSIQRLVLSTNRIK-TVDSAIPIYLSL-------------QHVDLSHTTWLIIPIGGFEPQEKLV   95 (581)
Q Consensus        32 ~~~~l~~ip~~~~--~~l~~L~L~~~~i~-~l~~~~~~~~~L-------------~~L~ls~~~l~~~~~~~~~~l~~L~   95 (581)
                      ++..++.+|..+.  +++++|++++|.+. .+|..++.+++|             ++|++++|.++.++..    .++|+
T Consensus        19 ~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~----~~~L~   94 (454)
T 1jl5_A           19 HSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL----PPHLE   94 (454)
T ss_dssp             ---------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC----CTTCS
T ss_pred             ccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC----cCCCC
Confidence            6677889997765  79999999999987 788888888875             9999999999988752    37899


Q ss_pred             EEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcc
Q psy8551          96 ELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVF  175 (581)
Q Consensus        96 ~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~  175 (581)
                      +|++++|.+                       ++++.    ..++|++|++++|.+++++..    .++|++|++++|.+
T Consensus        95 ~L~l~~n~l-----------------------~~lp~----~~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l  143 (454)
T 1jl5_A           95 SLVASCNSL-----------------------TELPE----LPQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQL  143 (454)
T ss_dssp             EEECCSSCC-----------------------SSCCC----CCTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCC
T ss_pred             EEEccCCcC-----------------------Ccccc----ccCCCcEEECCCCccCcccCC----CCCCCEEECcCCCC
Confidence            999999874                       22111    125666777776666655431    25667777777766


Q ss_pred             eeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCccc
Q psy8551         176 TTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF  255 (581)
Q Consensus       176 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  255 (581)
                      ++++  .+.++++|++|++++|+++.++.    ...+|++|++++|++++++  .+..+++|++|++++|.+..++..  
T Consensus       144 ~~lp--~~~~l~~L~~L~l~~N~l~~lp~----~~~~L~~L~L~~n~l~~l~--~~~~l~~L~~L~l~~N~l~~l~~~--  213 (454)
T 1jl5_A          144 EKLP--ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEELP--ELQNLPFLTAIYADNNSLKKLPDL--  213 (454)
T ss_dssp             SSCC--CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred             CCCc--ccCCCCCCCEEECCCCcCcccCC----CcccccEEECcCCcCCcCc--cccCCCCCCEEECCCCcCCcCCCC--
Confidence            6644  36666777777777766665432    1246677777777666655  366667777777777666654321  


Q ss_pred             CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcc
Q psy8551         256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR  335 (581)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  335 (581)
                        .++|+.|++++| .+..++  .+..+++|++|++++| .+..++.    ..++|+.|++++|.++++|..   .++|+
T Consensus       214 --~~~L~~L~l~~n-~l~~lp--~~~~l~~L~~L~l~~N-~l~~l~~----~~~~L~~L~l~~N~l~~l~~~---~~~L~  280 (454)
T 1jl5_A          214 --PLSLESIVAGNN-ILEELP--ELQNLPFLTTIYADNN-LLKTLPD----LPPSLEALNVRDNYLTDLPEL---PQSLT  280 (454)
T ss_dssp             --CTTCCEEECCSS-CCSSCC--CCTTCTTCCEEECCSS-CCSSCCS----CCTTCCEEECCSSCCSCCCCC---CTTCC
T ss_pred             --cCcccEEECcCC-cCCccc--ccCCCCCCCEEECCCC-cCCcccc----cccccCEEECCCCcccccCcc---cCcCC
Confidence              146667777665 333443  2556667777777766 4444443    235677777777777666543   25677


Q ss_pred             eEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC
Q psy8551         336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN  415 (581)
Q Consensus       336 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n  415 (581)
                      +|++++|.+.+.                                                 +.    -.++|+.|++++|
T Consensus       281 ~L~ls~N~l~~l-------------------------------------------------~~----~~~~L~~L~l~~N  307 (454)
T 1jl5_A          281 FLDVSENIFSGL-------------------------------------------------SE----LPPNLYYLNASSN  307 (454)
T ss_dssp             EEECCSSCCSEE-------------------------------------------------SC----CCTTCCEEECCSS
T ss_pred             EEECcCCccCcc-------------------------------------------------cC----cCCcCCEEECcCC
Confidence            777777655310                                                 00    0134555555555


Q ss_pred             cCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeec
Q psy8551         416 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE  495 (581)
Q Consensus       416 ~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  495 (581)
                      .+++++.    ..++|++|++++|.+++++.    .+++|++|++++| .++.++.    .+++|++|++++| .+..++
T Consensus       308 ~l~~i~~----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N-~l~~lp~----~l~~L~~L~L~~N-~l~~l~  373 (454)
T 1jl5_A          308 EIRSLCD----LPPSLEELNVSNNKLIELPA----LPPRLERLIASFN-HLAEVPE----LPQNLKQLHVEYN-PLREFP  373 (454)
T ss_dssp             CCSEECC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSS-CCSSCC
T ss_pred             cCCcccC----CcCcCCEEECCCCccccccc----cCCcCCEEECCCC-ccccccc----hhhhccEEECCCC-CCCcCC
Confidence            5554321    11355555555555554322    1355555555553 3333322    2445555555555 222211


Q ss_pred             --CCccCCC-------------CCccEEEcCCCcceeeccccccCCcceEEecCCCcccccC
Q psy8551         496 --EDALVGL-------------PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGC  542 (581)
Q Consensus       496 --~~~~~~l-------------~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c  542 (581)
                        +.++..+             ++|++|++++|.+++++..   -++++.|.+.+|.+.|.-
T Consensus       374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~i---P~sl~~L~~~~~~~~~~~  432 (454)
T 1jl5_A          374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDI---PESVEDLRMNSERVVDPY  432 (454)
T ss_dssp             CCCTTCCEEECCC-------------------------------------------------
T ss_pred             CChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccc---hhhHhheeCcCcccCCcc
Confidence              2233333             7899999999998865432   145778888888886643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=5.5e-31  Score=264.92  Aligned_cols=262  Identities=19%  Similarity=0.275  Sum_probs=199.8

Q ss_pred             cCccEEEcccCCccccccc-ccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          45 PSIQRLVLSTNRIKTVDSA-IPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~-~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      +++++|+++++.++.+|.. +..+++|++|++++|.++.++...|..+++|++|++++|.                    
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--------------------  104 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--------------------  104 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------------
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC--------------------
Confidence            7899999999999999874 6889999999999999999998899999999999999986                    


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                         ++.+.+..|+++++|++|++++|.++.++...+..+++|++|++++|.+..+++..+..+++|+.|++++|.++.+.
T Consensus       105 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  181 (390)
T 3o6n_A          105 ---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  181 (390)
T ss_dssp             ---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC
T ss_pred             ---CCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc
Confidence               45566667888999999999999999988877888999999999999999888878889999999999999888764


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN  283 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (581)
                         +..+++|+.|++++|.++.++     ..++|++|++++|.+...+..   ..++|+.|++.+|. ++..  ..+..+
T Consensus       182 ---~~~l~~L~~L~l~~n~l~~~~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~-l~~~--~~l~~l  247 (390)
T 3o6n_A          182 ---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNN-LTDT--AWLLNY  247 (390)
T ss_dssp             ---GGGCTTCSEEECCSSCCSEEE-----CCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSC-CCCC--GGGGGC
T ss_pred             ---cccccccceeecccccccccC-----CCCcceEEECCCCeeeecccc---ccccccEEECCCCC-Cccc--HHHcCC
Confidence               455788999999998887654     235789999999888766443   23566777776653 2222  234555


Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI  344 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  344 (581)
                      ++|++|++++| .+..+.+..+..+++|+.|++++|.++.++..+..+++|++|++++|++
T Consensus       248 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l  307 (390)
T 3o6n_A          248 PGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL  307 (390)
T ss_dssp             TTCSEEECCSS-CCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred             CCccEEECCCC-cCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcc
Confidence            66666666666 4444444455666666666666666665555555555566666655544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.98  E-value=5e-31  Score=261.01  Aligned_cols=306  Identities=26%  Similarity=0.406  Sum_probs=219.1

Q ss_pred             CCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcE
Q psy8551         136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS  215 (581)
Q Consensus       136 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  215 (581)
                      ..+++|+.|+++++.+..++  .+..+++|++|++++|.++++++  +..+++|++|++++|.++.+.  .+..+++|++
T Consensus        41 ~~l~~L~~L~l~~~~i~~~~--~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~~l~~L~~  114 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASIQ--GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQNLTNLRE  114 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred             hhcccccEEEEeCCccccch--hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHcCCCcCCE
Confidence            35677777777777777665  36667777777777777766654  667777777777777666543  4666677777


Q ss_pred             EECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCC
Q psy8551         216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP  295 (581)
Q Consensus       216 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (581)
                      |++++|.++.++.  +..+++|++|++++|.....                        ...  +..+++|++|++++| 
T Consensus       115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~------------------------~~~--~~~l~~L~~L~l~~~-  165 (347)
T 4fmz_A          115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSD------------------------LSP--LSNMTGLNYLTVTES-  165 (347)
T ss_dssp             EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC------------------------CGG--GTTCTTCCEEECCSS-
T ss_pred             EECcCCcccCchh--hccCCceeEEECCCCCCccc------------------------ccc--hhhCCCCcEEEecCC-
Confidence            7777776666653  56666666666666633221                        111  344556666666666 


Q ss_pred             CccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccc
Q psy8551         296 KLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY  375 (581)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  375 (581)
                      .+..++.  +..+++|+.|++++|.+..++. +..+++|+.+++++|.+..                             
T Consensus       166 ~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-----------------------------  213 (347)
T 4fmz_A          166 KVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITD-----------------------------  213 (347)
T ss_dssp             CCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC-----------------------------
T ss_pred             CcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCC-----------------------------
Confidence            3444443  6677788888888887776655 6677788888888776531                             


Q ss_pred             cccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccc
Q psy8551         376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL  455 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L  455 (581)
                                          +.  .+..+++|++|++++|.+++.++  +..+++|++|++++|.++..  ..+..+++|
T Consensus       214 --------------------~~--~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L  267 (347)
T 4fmz_A          214 --------------------IT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL  267 (347)
T ss_dssp             --------------------CG--GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             --------------------Cc--hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence                                11  14457888888888888887764  77888888888888888775  347788889


Q ss_pred             cEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCC
Q psy8551         456 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE  535 (581)
Q Consensus       456 ~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~  535 (581)
                      ++|++++| .++.+  ..+..+++|++|++++| .+...++..+..+++|++|++++|+++.++. +..+++|++|++++
T Consensus       268 ~~L~l~~n-~l~~~--~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          268 KMLNVGSN-QISDI--SVLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN  342 (347)
T ss_dssp             CEEECCSS-CCCCC--GGGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred             CEEEccCC-ccCCC--hhhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence            99999885 55554  34778899999999999 6776667778899999999999999998876 78899999999999


Q ss_pred             Cccc
Q psy8551         536 NPIE  539 (581)
Q Consensus       536 np~~  539 (581)
                      |+++
T Consensus       343 N~i~  346 (347)
T 4fmz_A          343 QVIK  346 (347)
T ss_dssp             C---
T ss_pred             hccc
Confidence            9985

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.98  E-value=3.5e-30  Score=262.76  Aligned_cols=350  Identities=18%  Similarity=0.227  Sum_probs=223.6

Q ss_pred             CcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      .+++++|+++++.++++| .+..+++|++|++++|.++.++   +..+++|++|++++|.+                   
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l-------------------   97 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKL-------------------   97 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCC-------------------
T ss_pred             cCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCC-------------------
Confidence            378999999999999987 6889999999999999998875   78889999999999874                   


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-cccc
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTNI  202 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~~  202 (581)
                          ++++   ++++++|++|++++|.++.++   +..+++|++|++++|.+++++   +..+++|+.|++++|. +..+
T Consensus        98 ----~~~~---~~~l~~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~  164 (457)
T 3bz5_A           98 ----TNLD---VTPLTKLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL  164 (457)
T ss_dssp             ----SCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC
T ss_pred             ----ceee---cCCCCcCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc
Confidence                2221   556677777777777776653   566677777777777766642   5666777777777763 3332


Q ss_pred             CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551         203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD  282 (581)
Q Consensus       203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  282 (581)
                         .+..+++|+.|++++|+++.++   +..+++|++|++++|.++.+.   +..+++|+.|++++| .++.++   +..
T Consensus       165 ---~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N-~l~~ip---~~~  231 (457)
T 3bz5_A          165 ---DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSN-KLTEID---VTP  231 (457)
T ss_dssp             ---CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSS-CCSCCC---CTT
T ss_pred             ---ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCC-cccccC---ccc
Confidence               3556677777777777777664   556677777777777766652   566677777777765 333333   556


Q ss_pred             CCCCCEEeCCCCCCccccccccccCCCCC----------cEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchh
Q psy8551         283 NLNLETLTLNKNPKLKTIEEGALVGLPNL----------YHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNIL  351 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L----------~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  351 (581)
                      +++|+.|++++| .++.++.   ..+++|          +.+++++|.+. .+|  +..+++|+.|++++|......+  
T Consensus       232 l~~L~~L~l~~N-~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~--  303 (457)
T 3bz5_A          232 LTQLTYFDCSVN-PLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD--  303 (457)
T ss_dssp             CTTCSEEECCSS-CCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE--
T ss_pred             cCCCCEEEeeCC-cCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec--
Confidence            667777777777 4555543   333444          44455555433 222  3467889999999886431100  


Q ss_pred             hHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCC
Q psy8551         352 WLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRL  431 (581)
Q Consensus       352 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L  431 (581)
                                     +                     ..   ..+..-.+.++++|++|++++|++++++   +..+++|
T Consensus       304 ---------------~---------------------~~---~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L  341 (457)
T 3bz5_A          304 ---------------C---------------------QA---AGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKL  341 (457)
T ss_dssp             ---------------C---------------------TT---CCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTC
T ss_pred             ---------------c---------------------CC---CcceEechhhcccCCEEECCCCcccccc---cccCCcC
Confidence                           0                     00   0111112455677888888888877753   6777788


Q ss_pred             cEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCcc
Q psy8551         432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLY  506 (581)
Q Consensus       432 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~  506 (581)
                      +.|++++|++++.        +.|..|.+.+ +.+...     ..+..|+.+++++|...+.+|+..+....++.
T Consensus       342 ~~L~l~~N~l~~l--------~~L~~L~l~~-n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~~~~~~~  402 (457)
T 3bz5_A          342 KSLSCVNAHIQDF--------SSVGKIPALN-NNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLDQFGNPM  402 (457)
T ss_dssp             SEEECCSSCCCBC--------TTGGGSSGGG-TSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBCTTSCCC
T ss_pred             cEEECCCCCCCCc--------cccccccccC-CcEEec-----ceeeecCccccccCcEEEEcChhHhcccCcee
Confidence            8888877777652        3455555554 233332     23345566666666545555544443333333

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.98  E-value=1.6e-30  Score=265.52  Aligned_cols=304  Identities=29%  Similarity=0.471  Sum_probs=198.7

Q ss_pred             hhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCC
Q psy8551           9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGG   87 (581)
Q Consensus         9 ~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~   87 (581)
                      ....||..|.|.. ....+.|  .+..++.+|..+++++++|+|++|+++.++ ..|.++++|++|+|++|.++.++...
T Consensus        31 ~~~~Cp~~C~C~~-~~~~v~c--~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~  107 (440)
T 3zyj_A           31 SAQTCPSVCSCSN-QFSKVIC--VRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGA  107 (440)
T ss_dssp             --CCCCSSSEECT-TSCEEEC--CSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGG
T ss_pred             ccccCCCCCEeCC-CCCEEEe--CCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhh
Confidence            3568999999986 4567999  999999999999999999999999988776 46788888888888888877777666


Q ss_pred             CCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551          88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE  167 (581)
Q Consensus        88 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  167 (581)
                      |.++++|++|++++|.                       ++.+++..|..+++|++|++++|.+..++...|..+++|++
T Consensus       108 ~~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  164 (440)
T 3zyj_A          108 FNGLANLNTLELFDNR-----------------------LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRR  164 (440)
T ss_dssp             GTTCSSCCEEECCSSC-----------------------CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             ccCCccCCEEECCCCc-----------------------CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCE
Confidence            6666777777666654                       33344444555566666666655555555544555555555


Q ss_pred             EECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc
Q psy8551         168 LRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF  247 (581)
Q Consensus       168 L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~  247 (581)
                      |++++|                       +.+..+....|..+++|++|++++|+++.++  .+..+++|++|++++|.+
T Consensus       165 L~l~~~-----------------------~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          165 LDLGEL-----------------------KRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCCC-----------------------TTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCTTCSSCCEEECTTSCC
T ss_pred             eCCCCC-----------------------CCcceeCcchhhcccccCeecCCCCcCcccc--ccCCCcccCEEECCCCcc
Confidence            555442                       2333344444555556666666666666554  255666666666666666


Q ss_pred             cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-
Q psy8551         248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-  326 (581)
Q Consensus       248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-  326 (581)
                      +.+.+..|..++                         +|+.|++++| .+..++...|..+++|+.|++++|.++.++. 
T Consensus       220 ~~~~~~~~~~l~-------------------------~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  273 (440)
T 3zyj_A          220 SAIRPGSFQGLM-------------------------HLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHD  273 (440)
T ss_dssp             CEECTTTTTTCT-------------------------TCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTT
T ss_pred             CccChhhhccCc-------------------------cCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChh
Confidence            555444444333                         3334444444 3444445566777888888888888887765 


Q ss_pred             cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC----CceeecCCCcccccccccCCccccccC
Q psy8551         327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT----SAVFCNSPAPLKYKSLISLSAEDLGCA  389 (581)
Q Consensus       327 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~  389 (581)
                      .+..+++|+.|++++|++.|+|...|+..+......    ....|..|.......+..+....+.|.
T Consensus       274 ~~~~l~~L~~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~C~  340 (440)
T 3zyj_A          274 LFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYFTCY  340 (440)
T ss_dssp             TTSSCTTCCEEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCSCCC
T ss_pred             HhccccCCCEEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhccCC
Confidence            456789999999999999999999999877655432    234566676666555555554444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.97  E-value=3.8e-30  Score=262.80  Aligned_cols=288  Identities=27%  Similarity=0.463  Sum_probs=197.7

Q ss_pred             CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeC
Q psy8551         212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL  291 (581)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  291 (581)
                      ....++..+..++.+|.. +  .++++.|++++|.+..+....|..+++|+.|++++| .+..+....|.++++|++|++
T Consensus        44 ~~~~v~c~~~~l~~iP~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           44 QFSKVICVRKNLREVPDG-I--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             TSCEEECCSCCCSSCCSC-C--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEEC
T ss_pred             CCCEEEeCCCCcCcCCCC-C--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEEC
Confidence            356788888888888853 2  257888888888888777766777776776666664 344444445555555555555


Q ss_pred             CCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551         292 NKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA  371 (581)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  371 (581)
                      ++| .+..++...|..+++|++|++++|.++.++.                                             
T Consensus       120 ~~n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------------------------------------------  153 (440)
T 3zyj_A          120 FDN-RLTTIPNGAFVYLSKLKELWLRNNPIESIPS---------------------------------------------  153 (440)
T ss_dssp             CSS-CCSSCCTTTSCSCSSCCEEECCSCCCCEECT---------------------------------------------
T ss_pred             CCC-cCCeeCHhHhhccccCceeeCCCCcccccCH---------------------------------------------
Confidence            555 4444444445555555555555555544433                                             


Q ss_pred             cccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC-cCCccChhhhcCCCCCcEeecCCCcceeecccccc
Q psy8551         372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK  450 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~  450 (581)
                                                 ..|.++++|++|++++| .+..++...|..+++|++|++++|.++.++  .+.
T Consensus       154 ---------------------------~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~  204 (440)
T 3zyj_A          154 ---------------------------YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--NLT  204 (440)
T ss_dssp             ---------------------------TTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--CCT
T ss_pred             ---------------------------HHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--ccC
Confidence                                       23444555555555552 344444445556666666666666665443  255


Q ss_pred             CCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcce
Q psy8551         451 GLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELR  529 (581)
Q Consensus       451 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~  529 (581)
                      .+++|++|++++ +.++.+.+..|.++++|++|++++| .+..+++..+.++++|++|+|++|+++.++.. +..+++|+
T Consensus       205 ~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  282 (440)
T 3zyj_A          205 PLIKLDELDLSG-NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLE  282 (440)
T ss_dssp             TCSSCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCC
T ss_pred             CCcccCEEECCC-CccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCC
Confidence            666677777766 3566666677788888888888888 78888888899999999999999999988754 56789999


Q ss_pred             EEecCCCcccccCchhHHHHHHhhcCC----CceeeCCCcccccccccccCcccc
Q psy8551         530 TIDIAENPIECGCNILWLREMLVRRNT----SAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       530 ~L~l~~np~~c~c~~~~~~~~~~~~~~----~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      .|++++|||.|+|+++||..|.+....    ..+.|..|..++|+.+.+++.++.
T Consensus       283 ~L~L~~Np~~CdC~l~~l~~~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~  337 (440)
T 3zyj_A          283 RIHLHHNPWNCNCDILWLSWWIKDMAPSNTACCARCNTPPNLKGRYIGELDQNYF  337 (440)
T ss_dssp             EEECCSSCEECSSTTHHHHHHHHTTSCSSCSCCCBEEESTTTTTCBCC----CCS
T ss_pred             EEEcCCCCccCCCCchHHHHHHHhccccCCccccCCCChhHhcCccHhHhhhhhc
Confidence            999999999999999999999987533    345799999999999988877653

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=4.1e-30  Score=263.52  Aligned_cols=304  Identities=28%  Similarity=0.453  Sum_probs=204.5

Q ss_pred             hhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCC
Q psy8551           9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGG   87 (581)
Q Consensus         9 ~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~   87 (581)
                      ....||..|.|.. ....+.|  .+.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|+|++|.++.++...
T Consensus        42 ~~~~Cp~~C~C~~-~~~~v~c--~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~  118 (452)
T 3zyi_A           42 GPQNCPSVCSCSN-QFSKVVC--TRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGA  118 (452)
T ss_dssp             --CCCCTTSEECS-SSCEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             CcCCCCCCCEECC-CCcEEEE--CCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhh
Confidence            3678999999975 4467899  999999999999999999999999999874 57889999999999999998888888


Q ss_pred             CCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551          88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE  167 (581)
Q Consensus        88 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  167 (581)
                      |.++++|++|++++|.                       ++.+++..|.++++|++|++++|.+..++...+..+++|++
T Consensus       119 ~~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  175 (452)
T 3zyi_A          119 FNGLASLNTLELFDNW-----------------------LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR  175 (452)
T ss_dssp             TTTCTTCCEEECCSSC-----------------------CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             ccCcccCCEEECCCCc-----------------------CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccE
Confidence            8888888888888875                       34455555667777777777777777666666666666666


Q ss_pred             EECCC-CcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCc
Q psy8551         168 LRVGL-NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG  246 (581)
Q Consensus       168 L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~  246 (581)
                      |++++ +.+..++...+.++++|+.|++                        ++|+++.++  .+..+++|++|++++|.
T Consensus       176 L~l~~~~~l~~i~~~~~~~l~~L~~L~L------------------------~~n~l~~~~--~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          176 LDLGELKKLEYISEGAFEGLFNLKYLNL------------------------GMCNIKDMP--NLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             EECCCCTTCCEECTTTTTTCTTCCEEEC------------------------TTSCCSSCC--CCTTCTTCCEEECTTSC
T ss_pred             EeCCCCCCccccChhhccCCCCCCEEEC------------------------CCCcccccc--cccccccccEEECcCCc
Confidence            66665 3344444444444445555554                        444444443  24445555555555555


Q ss_pred             ccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc
Q psy8551         247 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE  326 (581)
Q Consensus       247 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~  326 (581)
                      +..+.+..|..+++|                         +.|++++| .+..+....|..+++|+.|++++|.++.++.
T Consensus       230 l~~~~~~~~~~l~~L-------------------------~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSL-------------------------KKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             CSEECGGGGTTCTTC-------------------------CEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcccCcccccCccCC-------------------------CEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence            544443333333333                         33333333 2333334456667777777777777776665


Q ss_pred             -cccCCCCcceEEccCCCCccCCchhhHHHHHhhcC----CCceeecCCCcccccccccCCccccccCC
Q psy8551         327 -SMLAWPELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNSPAPLKYKSLISLSAEDLGCAG  390 (581)
Q Consensus       327 -~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  390 (581)
                       .+..+++|+.|++++|++.|+|...|+..+.....    .....|..|.......+..+......|..
T Consensus       284 ~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~~~C~~  352 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNPWNCDCDILWLAWWLREYIPTNSTCCGRCHAPMHMRGRYLVEVDQASFQCSA  352 (452)
T ss_dssp             TSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHHHC---CCSSCBEEESTTTTTCBTTSCCGGGCCCCC
T ss_pred             HHhccccCCCEEEccCCCcCCCCCchHHHHHHHHhCccCCccCcEeCCchHhccchhhccchhhhcccC
Confidence             45678899999999999999999988876554332    22346777776666555555555444443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1e-29  Score=259.27  Aligned_cols=334  Identities=21%  Similarity=0.216  Sum_probs=257.5

Q ss_pred             hhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCC
Q psy8551         132 QACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLS  211 (581)
Q Consensus       132 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~  211 (581)
                      +..++++++|++|++++|.+++++  .+..+++|++|++++|.+++++   +..+++|++|++++|.++++.   +..++
T Consensus        35 ~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~---~~~l~  106 (457)
T 3bz5_A           35 TISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD---VTPLT  106 (457)
T ss_dssp             EEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC---CTTCT
T ss_pred             ccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee---cCCCC
Confidence            334677899999999999999885  5888999999999999998873   788999999999999998863   78899


Q ss_pred             CCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeC
Q psy8551         212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL  291 (581)
Q Consensus       212 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l  291 (581)
                      +|++|++++|++++++   +..+++|++|++++|.++.++   +..+++|+.|++++|..+..+   .+..+++|+.|++
T Consensus       107 ~L~~L~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~l  177 (457)
T 3bz5_A          107 KLTYLNCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDC  177 (457)
T ss_dssp             TCCEEECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC---CCTTCTTCCEEEC
T ss_pred             cCCEEECCCCcCCeec---CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc---ccccCCcCCEEEC
Confidence            9999999999999875   788999999999999998863   778899999999998766655   4677889999999


Q ss_pred             CCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551         292 NKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA  371 (581)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  371 (581)
                      ++| .++.++   +..+++|+.|++++|.++.+  .+..+++|++|++++|.+..                         
T Consensus       178 s~n-~l~~l~---l~~l~~L~~L~l~~N~l~~~--~l~~l~~L~~L~Ls~N~l~~-------------------------  226 (457)
T 3bz5_A          178 SFN-KITELD---VSQNKLLNRLNCDTNNITKL--DLNQNIQLTFLDCSSNKLTE-------------------------  226 (457)
T ss_dssp             CSS-CCCCCC---CTTCTTCCEEECCSSCCSCC--CCTTCTTCSEEECCSSCCSC-------------------------
T ss_pred             CCC-ccceec---cccCCCCCEEECcCCcCCee--ccccCCCCCEEECcCCcccc-------------------------
Confidence            999 677665   77889999999999999887  37788999999999987641                         


Q ss_pred             cccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCC-------CCcEeecCCCcceee
Q psy8551         372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT-------RLEELEIGQNGFSML  444 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~-------~L~~L~l~~~~i~~~  444 (581)
                                              ++   +..+++|+.|++++|.+++.++..+..++       +|+.|++++|...+.
T Consensus       227 ------------------------ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~  279 (457)
T 3bz5_A          227 ------------------------ID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIY  279 (457)
T ss_dssp             ------------------------CC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCE
T ss_pred             ------------------------cC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCc
Confidence                                    11   45678899999999999888744443333       344555555544433


Q ss_pred             ccccccCCccccEEeecCCCCeeEecC-------CccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCccee
Q psy8551         445 EAGCFKGLSYLKRLEITGASNLTRVRK-------GAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS  517 (581)
Q Consensus       445 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~  517 (581)
                      .+  +..+++|+.|++++|..+..++.       -.+.++++|++|++++| .++.++   ++++++|+.|++++|++++
T Consensus       280 ~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~l~---l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          280 FQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTELD---VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             EE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSCCC---CTTCTTCSEEECCSSCCCB
T ss_pred             cc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCC-cccccc---cccCCcCcEEECCCCCCCC
Confidence            32  45678888888888765554432       12556778888888888 566653   7788888888888888876


Q ss_pred             eccc--c----------ccCCcceEEecCCCcccccCchhH
Q psy8551         518 FSES--M----------LAWPELRTIDIAENPIECGCNILW  546 (581)
Q Consensus       518 l~~~--~----------~~~~~L~~L~l~~np~~c~c~~~~  546 (581)
                      ++.-  +          ..+..|+.+++++|.++...+..|
T Consensus       354 l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          354 FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred             ccccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence            5321  0          112456677788888776665443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=9e-31  Score=270.82  Aligned_cols=300  Identities=24%  Similarity=0.365  Sum_probs=253.6

Q ss_pred             cccCCCccCCCC-C--CcCccEEEcccCCcccc-cccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCC
Q psy8551          31 LQEANLDVIPSH-S--NPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFP  106 (581)
Q Consensus        31 ~~~~~l~~ip~~-~--~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~  106 (581)
                      +++..++.++.. +  .++|++|+|++|.++.+ |..|.++++|++|++++|.++.++...|.++++|++|++++|.   
T Consensus        39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~---  115 (477)
T 2id5_A           39 LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK---  115 (477)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC---
T ss_pred             CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc---
Confidence            478888888643 3  37999999999999987 5689999999999999999999998889999999999999986   


Q ss_pred             cccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCC
Q psy8551         107 QQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGL  186 (581)
Q Consensus       107 ~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l  186 (581)
                                          ++.+.+..|.++++|++|++++|.+..+....|..+++|++|++++|.++.++...+.++
T Consensus       116 --------------------i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (477)
T 2id5_A          116 --------------------IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL  175 (477)
T ss_dssp             --------------------CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred             --------------------cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence                                344555667888899999999888888877788888899999999888888777678888


Q ss_pred             CCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCC-ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceee
Q psy8551         187 GRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQ-SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLE  265 (581)
Q Consensus       187 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  265 (581)
                      ++|+.|++++|.+..+.+..+..+++|+.|++++|... .++.. .....+|++|++++|.++.++...+..+++|+.|+
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  254 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN  254 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCcccccCHHHhcCccccCeeE
Confidence            89999999988888888778888889999999887654 44433 33445889999999988887777788888999999


Q ss_pred             ecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCC
Q psy8551         266 ITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPI  344 (581)
Q Consensus       266 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~  344 (581)
                      +++| .+..+....+..+++|+.|++++| .+..+....|..+++|+.|++++|.++.+++ .+..+++|++|++++|++
T Consensus       255 Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l  332 (477)
T 2id5_A          255 LSYN-PISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL  332 (477)
T ss_dssp             CCSS-CCCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred             CCCC-cCCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence            9886 467777778888999999999999 6777777789999999999999999998876 456789999999999999


Q ss_pred             ccCCchhhHHHH
Q psy8551         345 ECGCNILWLREM  356 (581)
Q Consensus       345 ~~~~~~~~l~~~  356 (581)
                      .|+|...|+...
T Consensus       333 ~c~c~~~~~~~~  344 (477)
T 2id5_A          333 ACDCRLLWVFRR  344 (477)
T ss_dssp             ECSGGGHHHHTT
T ss_pred             cCccchHhHHhh
Confidence            999999998654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.9e-30  Score=252.84  Aligned_cols=300  Identities=23%  Similarity=0.364  Sum_probs=193.7

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      +++++|+++++.+..++. +..+++|++|++++|.++.++.  +..+++|++|++++|.+                    
T Consensus        44 ~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i--------------------  100 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--------------------  100 (347)
T ss_dssp             TTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred             ccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcc--------------------
Confidence            567777777777776654 6667777777777777666654  66667777777776642                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.+  ..+.++++|++|++++|.+..++.  +..+++|++|++++|......+ .+..+++|+.|++++|.+....+
T Consensus       101 ---~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~  172 (347)
T 4fmz_A          101 ---TDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP  172 (347)
T ss_dssp             ---CCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG
T ss_pred             ---cCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh
Confidence               222  125666677777777766666543  5566666666666664332222 25566666666666666554443


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  284 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (581)
                        +..+++|++|++++|.++.++.  +..+++|+.+++++|.+.....                           +..++
T Consensus       173 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---------------------------~~~~~  221 (347)
T 4fmz_A          173 --IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---------------------------VANMT  221 (347)
T ss_dssp             --GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---------------------------GGGCT
T ss_pred             --hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---------------------------hhcCC
Confidence              5556666666666666655543  5555666666666655543332                           33445


Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA  364 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~  364 (581)
                      +|++|++++| .+..++.  +..+++|+.|++++|.++.+ +.+..+++|++|++++|.+..                  
T Consensus       222 ~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~------------------  279 (347)
T 4fmz_A          222 RLNSLKIGNN-KITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISD------------------  279 (347)
T ss_dssp             TCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCC------------------
T ss_pred             cCCEEEccCC-ccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCC------------------
Confidence            5666666666 4555443  66777777777777777765 346667778888887776531                  


Q ss_pred             eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551         365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  444 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  444 (581)
                                                     +  ..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       280 -------------------------------~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  326 (347)
T 4fmz_A          280 -------------------------------I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDI  326 (347)
T ss_dssp             -------------------------------C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCC
T ss_pred             -------------------------------C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccc
Confidence                                           1  1244577888888888888877777788888888888888888877


Q ss_pred             ccccccCCccccEEeecCC
Q psy8551         445 EAGCFKGLSYLKRLEITGA  463 (581)
Q Consensus       445 ~~~~~~~~~~L~~L~l~~~  463 (581)
                      .+  +..+++|++|++++|
T Consensus       327 ~~--~~~l~~L~~L~l~~N  343 (347)
T 4fmz_A          327 RP--LASLSKMDSADFANQ  343 (347)
T ss_dssp             GG--GGGCTTCSEESSSCC
T ss_pred             cC--hhhhhccceeehhhh
Confidence            66  677888888888875

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=6.7e-30  Score=270.95  Aligned_cols=262  Identities=19%  Similarity=0.275  Sum_probs=198.9

Q ss_pred             cCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          45 PSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      ++++.++++++.++.+|. .+.++++|++|++++|.++.+++..|..+++|++|++++|.                    
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--------------------  110 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA--------------------  110 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--------------------
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc--------------------
Confidence            688999999999999987 46789999999999999999988889999999999999885                    


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                         ++.+++..|+++++|++|++++|.++.++...|..+++|++|++++|.+.++++..+..+++|+.|++++|.++.+.
T Consensus       111 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  187 (597)
T 3oja_B          111 ---IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD  187 (597)
T ss_dssp             ---CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC
T ss_pred             ---CCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC
Confidence               45566667888999999999999999988877888999999999999999888888889999999999999888765


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN  283 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (581)
                         +..+++|+.|++++|.++.++     ..++|++|++++|.+..++...   .++|+.|++++|. +...  ..+..+
T Consensus       188 ---~~~l~~L~~L~l~~n~l~~l~-----~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~-l~~~--~~l~~l  253 (597)
T 3oja_B          188 ---LSLIPSLFHANVSYNLLSTLA-----IPIAVEELDASHNSINVVRGPV---NVELTILKLQHNN-LTDT--AWLLNY  253 (597)
T ss_dssp             ---GGGCTTCSEEECCSSCCSEEE-----CCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSC-CCCC--GGGGGC
T ss_pred             ---hhhhhhhhhhhcccCcccccc-----CCchhheeeccCCccccccccc---CCCCCEEECCCCC-CCCC--hhhccC
Confidence               445678999999998887654     2457889999998887665432   2456777776653 2221  345555


Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI  344 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  344 (581)
                      ++|+.|++++| .+..+.+..+..+++|+.|++++|.++.++..+..+++|+.|++++|.+
T Consensus       254 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l  313 (597)
T 3oja_B          254 PGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL  313 (597)
T ss_dssp             TTCSEEECCSS-CCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCC
T ss_pred             CCCCEEECCCC-ccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCC
Confidence            66666666666 4444444456666666666666666666655555556666666666544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.4e-30  Score=251.47  Aligned_cols=299  Identities=20%  Similarity=0.325  Sum_probs=197.4

Q ss_pred             hhhhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCC
Q psy8551           7 QELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPI   85 (581)
Q Consensus         7 ~~~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~   85 (581)
                      .+..+.||..|.|.-   +.+.|  .+.+++.+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.+.+
T Consensus        19 ~~~~~~cp~~c~c~l---~~l~~--~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (330)
T 1xku_A           19 EPMGPVCPFRCQCHL---RVVQC--SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP   93 (330)
T ss_dssp             ---CCCCCTTCEEET---TEEEC--TTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT
T ss_pred             ccccCCCCCCCcCCC---eEEEe--cCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH
Confidence            344567999998865   67889  9999999999999999999999999999876 79999999999999999999988


Q ss_pred             CCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccC
Q psy8551          86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML  165 (581)
Q Consensus        86 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  165 (581)
                      ..|..+++|++|++++|.+.                       .++.. +  .++|++|++++|.+..++...+..+++|
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~-----------------------~l~~~-~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L  147 (330)
T 1xku_A           94 GAFAPLVKLERLYLSKNQLK-----------------------ELPEK-M--PKTLQELRVHENEITKVRKSVFNGLNQM  147 (330)
T ss_dssp             TTTTTCTTCCEEECCSSCCS-----------------------BCCSS-C--CTTCCEEECCSSCCCBBCHHHHTTCTTC
T ss_pred             HHhcCCCCCCEEECCCCcCC-----------------------ccChh-h--cccccEEECCCCcccccCHhHhcCCccc
Confidence            89999999999999998751                       11111 1  1456666666666665555555556666


Q ss_pred             cEEECCCCccee--ccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECC
Q psy8551         166 AELRVGLNVFTT--LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG  243 (581)
Q Consensus       166 ~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  243 (581)
                      ++|++++|.+..  ..+..+.++++|+.|++++|.++.++...   .++|++|++++|+++.+++..+..+++|++|+++
T Consensus       148 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  224 (330)
T 1xku_A          148 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS  224 (330)
T ss_dssp             CEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred             cEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            666666665542  33344555566666666666555544321   1456666666666665555556666666666666


Q ss_pred             CCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccC------CCCCcEEecC
Q psy8551         244 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG------LPNLYHLNLK  317 (581)
Q Consensus       244 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~L~~L~l~  317 (581)
                      +|.+....+..+..+++|+.|++++| .+..++. .+..+++|++|++++| .++.++...|..      .+.++.+++.
T Consensus       225 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~  301 (330)
T 1xku_A          225 FNSISAVDNGSLANTPHLRELHLNNN-KLVKVPG-GLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLF  301 (330)
T ss_dssp             SSCCCEECTTTGGGSTTCCEEECCSS-CCSSCCT-TTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECC
T ss_pred             CCcCceeChhhccCCCCCCEEECCCC-cCccCCh-hhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEee
Confidence            66666555555555666666666654 2333322 3455666777777766 456655544432      3567788888


Q ss_pred             CCCCcc--c-cccccCCCCcceEEccCC
Q psy8551         318 ENAFTS--F-SESMLAWPELRTIDIAEN  342 (581)
Q Consensus       318 ~~~l~~--~-~~~~~~~~~L~~L~l~~~  342 (581)
                      +|.+..  + |..+..++.++.+++++|
T Consensus       302 ~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          302 SNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCcccccccCccccccccceeEEEeccc
Confidence            887652  2 345666777888888776

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.97  E-value=1.2e-29  Score=259.94  Aligned_cols=266  Identities=30%  Similarity=0.470  Sum_probs=165.2

Q ss_pred             CCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEe
Q psy8551         236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN  315 (581)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  315 (581)
                      ++++|++++|.+..+.+..|..+++|+.|++++| .+..+.+..|.++++|++|++++| .+..++...|..+++|++|+
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEEE
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEEE
Confidence            3444444444444443333444444444443332 223333333444445555555555 45555555566666666666


Q ss_pred             cCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCcc
Q psy8551         316 LKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLT  394 (581)
Q Consensus       316 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  394 (581)
                      +++|.++.++. .+..+++|++|++++|..                                                +.
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~------------------------------------------------l~  185 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKK------------------------------------------------LE  185 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTT------------------------------------------------CC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCC------------------------------------------------cc
Confidence            66666665544 344555555555554321                                                11


Q ss_pred             ccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCcc
Q psy8551         395 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF  474 (581)
Q Consensus       395 ~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  474 (581)
                      .+....|.++++|++|++++|.+++++  .+..+++|++|++++|.                         ++.+.+..|
T Consensus       186 ~i~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~-------------------------l~~~~~~~~  238 (452)
T 3zyi_A          186 YISEGAFEGLFNLKYLNLGMCNIKDMP--NLTPLVGLEELEMSGNH-------------------------FPEIRPGSF  238 (452)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCSSCC--CCTTCTTCCEEECTTSC-------------------------CSEECGGGG
T ss_pred             ccChhhccCCCCCCEEECCCCcccccc--cccccccccEEECcCCc-------------------------CcccCcccc
Confidence            122233444555555555555555443  24444444444444444                         444444556


Q ss_pred             CCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhh
Q psy8551         475 ADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVR  553 (581)
Q Consensus       475 ~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~  553 (581)
                      .++++|++|++++| .+..+++..+.++++|++|++++|+++.++.. +..+++|++|++++|||.|+|++.|+..|.++
T Consensus       239 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~~l~~~l~~  317 (452)
T 3zyi_A          239 HGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWLRE  317 (452)
T ss_dssp             TTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTHHHHHHHHH
T ss_pred             cCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCchHHHHHHHH
Confidence            66677777777777 67777778889999999999999999988754 56789999999999999999999999999987


Q ss_pred             cC----CCceeeCCCcccccccccccCccc
Q psy8551         554 RN----TSAVFCNSPAPLKYKSLISLSAED  579 (581)
Q Consensus       554 ~~----~~~~~c~~~~~~~~~~~~~~~~~~  579 (581)
                      ..    ...+.|..|..++|+.+.+++..+
T Consensus       318 ~~~~~~~~~~~C~~P~~l~g~~l~~~~~~~  347 (452)
T 3zyi_A          318 YIPTNSTCCGRCHAPMHMRGRYLVEVDQAS  347 (452)
T ss_dssp             HC---CCSSCBEEESTTTTTCBTTSCCGGG
T ss_pred             hCccCCccCcEeCCchHhccchhhccchhh
Confidence            42    234689999999999998887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.97  E-value=6.2e-30  Score=248.30  Aligned_cols=284  Identities=20%  Similarity=0.325  Sum_probs=222.7

Q ss_pred             cEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCC
Q psy8551         214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  293 (581)
Q Consensus       214 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (581)
                      +.++.+++.++.+|...   .++|++|++++|.++.++...+..+++|+.|++++                         
T Consensus        10 ~~l~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~-------------------------   61 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSS-------------------------   61 (306)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS-------------------------
T ss_pred             CEEEcCCCCcccCCCCC---CCCCCEEECCCCccCccCHhHhhccccCCEEECCC-------------------------
Confidence            46777777787777432   25788888888877766655555555555555544                         


Q ss_pred             CCCccccc--cccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551         294 NPKLKTIE--EGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA  371 (581)
Q Consensus       294 ~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  371 (581)
                      | .+..+.  ...+..+++|+.|++++|.++.++..+..+++|++|++++|.+..                         
T Consensus        62 n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~-------------------------  115 (306)
T 2z66_A           62 N-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ-------------------------  115 (306)
T ss_dssp             S-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEES-------------------------
T ss_pred             C-ccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccc-------------------------
Confidence            4 232221  123456778888888888888777777788888888888876531                         


Q ss_pred             cccccccccCCccccccCCCCccccCc-cccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee-eccccc
Q psy8551         372 PLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCF  449 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~-~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~~  449 (581)
                                              +.. ..+.++++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+
T Consensus       116 ------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A          116 ------------------------MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             ------------------------STTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             ------------------------cccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence                                    111 345667889999999999888877888899999999999998886 567778


Q ss_pred             cCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCC-c
Q psy8551         450 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWP-E  527 (581)
Q Consensus       450 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~-~  527 (581)
                      ..+++|++|++++ +.++.+.+..+..+++|++|++++| .+..+++..+..+++|++|++++|.+++. +..+..++ +
T Consensus       172 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~  249 (306)
T 2z66_A          172 TELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS  249 (306)
T ss_dssp             TTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTT
T ss_pred             hhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhcc
Confidence            8999999999998 4778888888999999999999999 77888777789999999999999999875 45677774 8


Q ss_pred             ceEEecCCCcccccCchhHHHHHHhhc-----CCCceeeCCCcccccccccccCc
Q psy8551         528 LRTIDIAENPIECGCNILWLREMLVRR-----NTSAVFCNSPAPLKYKSLISLSA  577 (581)
Q Consensus       528 L~~L~l~~np~~c~c~~~~~~~~~~~~-----~~~~~~c~~~~~~~~~~~~~~~~  577 (581)
                      |++|++++||++|+|+..||.+|+++.     ....+.|..|..++|+++.+++.
T Consensus       250 L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~~~~~~~~  304 (306)
T 2z66_A          250 LAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI  304 (306)
T ss_dssp             CCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTCBGGGCCC
T ss_pred             CCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCceeeeecC
Confidence            999999999999999999999999874     33456899999999999999865

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=5.8e-30  Score=251.41  Aligned_cols=297  Identities=23%  Similarity=0.328  Sum_probs=230.4

Q ss_pred             hhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCC
Q psy8551           9 LRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGG   87 (581)
Q Consensus         9 ~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~   87 (581)
                      +...||..|.|.-   +.+.|  .+..++.+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.+.+..
T Consensus        23 ~~~~cp~~c~c~l---~~l~~--~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~   97 (332)
T 2ft3_A           23 YSAMCPFGCHCHL---RVVQC--SDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA   97 (332)
T ss_dssp             --CCCCSSCEEET---TEEEC--CSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG
T ss_pred             ccCCCCCCCcccC---CEEEC--CCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH
Confidence            3567999998865   67889  9999999999999999999999999998864 7999999999999999999998788


Q ss_pred             CCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcE
Q psy8551          88 FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAE  167 (581)
Q Consensus        88 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~  167 (581)
                      |..+++|++|++++|.+                       +.++...+   ++|++|++++|.+..++...+..+++|++
T Consensus        98 ~~~l~~L~~L~L~~n~l-----------------------~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           98 FSPLRKLQKLYISKNHL-----------------------VEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNC  151 (332)
T ss_dssp             STTCTTCCEEECCSSCC-----------------------CSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCE
T ss_pred             hhCcCCCCEEECCCCcC-----------------------CccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCE
Confidence            99999999999999874                       22222211   67888888888888887777788888888


Q ss_pred             EECCCCccee--ccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCC
Q psy8551         168 LRVGLNVFTT--LADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN  245 (581)
Q Consensus       168 L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~  245 (581)
                      |++++|.++.  ..+..+..+ +|+.|++++|.++.++...   .++|++|++++|.++.+++..+..+++|++|++++|
T Consensus       152 L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N  227 (332)
T 2ft3_A          152 IEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN  227 (332)
T ss_dssp             EECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS
T ss_pred             EECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC
Confidence            8888888763  445556666 8888888888887765432   267888888888888877777888888888888888


Q ss_pred             cccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccC------CCCCcEEecCCC
Q psy8551         246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVG------LPNLYHLNLKEN  319 (581)
Q Consensus       246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------~~~L~~L~l~~~  319 (581)
                      .+....+..+..+++|+.|++++| .+..++. .+..+++|+.|++++| .++.++...|..      .+.++.+++.+|
T Consensus       228 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~-~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          228 QIRMIENGSLSFLPTLRELHLDNN-KLSRVPA-GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             CCCCCCTTGGGGCTTCCEEECCSS-CCCBCCT-TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             cCCcCChhHhhCCCCCCEEECCCC-cCeecCh-hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecC
Confidence            888877777778888888888876 4444444 3677788888888888 577776655554      357889999999


Q ss_pred             CCc--cc-cccccCCCCcceEEccCCC
Q psy8551         320 AFT--SF-SESMLAWPELRTIDIAENP  343 (581)
Q Consensus       320 ~l~--~~-~~~~~~~~~L~~L~l~~~~  343 (581)
                      .+.  .+ +..+..+++|+.+++++|.
T Consensus       305 ~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          305 PVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             SSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             cccccccCcccccccchhhhhhccccc
Confidence            876  33 3467778889999988763

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=4.7e-29  Score=244.91  Aligned_cols=256  Identities=28%  Similarity=0.413  Sum_probs=179.3

Q ss_pred             ccCCCccCCCCCC--------cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCC
Q psy8551          32 QEANLDVIPSHSN--------PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNK  103 (581)
Q Consensus        32 ~~~~l~~ip~~~~--------~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~  103 (581)
                      ....++.+|....        .+++.++++++.++.+|..+  .++|++|++++|.++.+++..|.++++|++|++++|.
T Consensus        12 ~~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~   89 (332)
T 2ft3_A           12 GIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK   89 (332)
T ss_dssp             -------------CCCCSSCEEETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCCccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc
Confidence            4455555554321        36899999999999988765  3789999999999999888889999999999999875


Q ss_pred             CCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcC
Q psy8551         104 HFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAF  183 (581)
Q Consensus       104 ~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l  183 (581)
                                             ++.+.+..|+++++|++|++++|.++.++...+   ++|++|++++|.++.+++..+
T Consensus        90 -----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~  143 (332)
T 2ft3_A           90 -----------------------ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVF  143 (332)
T ss_dssp             -----------------------CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGG
T ss_pred             -----------------------cCccCHhHhhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHh
Confidence                                   455666778889999999999998888776433   788888888888888777778


Q ss_pred             CCCCCCcEEEcCCCCccc--cCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCccc
Q psy8551         184 NGLGRLSALDLRGAGLTN--ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL  261 (581)
Q Consensus       184 ~~l~~L~~L~L~~~~l~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L  261 (581)
                      .++++|+.|++++|.++.  ..+..+..+ +|++|++++|+++.++....   ++|++|++++|.+....+..+..+++|
T Consensus       144 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L  219 (332)
T 2ft3_A          144 SGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKL  219 (332)
T ss_dssp             SSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTC
T ss_pred             CCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCC
Confidence            888888888888887753  445556655 78888888888877764322   567777777777666555445544444


Q ss_pred             ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccC
Q psy8551         262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE  341 (581)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  341 (581)
                      +.                         |++++| .+..++...+..+++|+.|++++|.++.+|..+..+++|++|++++
T Consensus       220 ~~-------------------------L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~  273 (332)
T 2ft3_A          220 YR-------------------------LGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT  273 (332)
T ss_dssp             SC-------------------------CBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCS
T ss_pred             CE-------------------------EECCCC-cCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCC
Confidence            44                         444444 3444444456666777777777777777766666667777777777


Q ss_pred             CCCc
Q psy8551         342 NPIE  345 (581)
Q Consensus       342 ~~~~  345 (581)
                      |++.
T Consensus       274 N~l~  277 (332)
T 2ft3_A          274 NNIT  277 (332)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            6654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.7e-28  Score=240.86  Aligned_cols=244  Identities=28%  Similarity=0.443  Sum_probs=171.9

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .+++.++++++.++.+|..+.  +++++|++++|.++.++...|.++++|++|++++|.                     
T Consensus        31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~---------------------   87 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK---------------------   87 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC---------------------
T ss_pred             CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc---------------------
Confidence            378889999999988887553  688999999999988888788888899999888875                     


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccc--c
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN--I  202 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~--~  202 (581)
                        ++.+.+..|+++++|++|++++|.++.++...+   ++|++|++++|.++.+++..+.++++|+.|++++|.++.  .
T Consensus        88 --l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  162 (330)
T 1xku_A           88 --ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  162 (330)
T ss_dssp             --CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             --CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCc
Confidence              445556667888888888888888887766332   678888888887777766667777778888887777653  4


Q ss_pred             CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551         203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD  282 (581)
Q Consensus       203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  282 (581)
                      .+..+..+++|++|++++|.++.++....   ++|++|++++|.++...+..+..++                       
T Consensus       163 ~~~~~~~l~~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~-----------------------  216 (330)
T 1xku_A          163 ENGAFQGMKKLSYIRIADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLN-----------------------  216 (330)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCCSCCSSCC---TTCSEEECTTSCCCEECTGGGTTCT-----------------------
T ss_pred             ChhhccCCCCcCEEECCCCccccCCcccc---ccCCEEECCCCcCCccCHHHhcCCC-----------------------
Confidence            45566677777777777777776664322   5677777777766655544444444                       


Q ss_pred             CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCc
Q psy8551         283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE  345 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~  345 (581)
                        +|+.|++++| .++.++...+..+++|++|++++|.++.+|..+..+++|++|++++|++.
T Consensus       217 --~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          217 --NLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             --TCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCC
T ss_pred             --CCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCC
Confidence              4444555544 34444444556666677777777776666666666666777777666554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.97  E-value=9.8e-29  Score=237.13  Aligned_cols=245  Identities=24%  Similarity=0.384  Sum_probs=204.0

Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccc-cccccCCCCcceEEccCCC-CccCCchhhHHHHHhhcC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENP-IECGCNILWLREMLVRRN  361 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~~~  361 (581)
                      +++++|+++++ .++.++...+..+++|++|++++|.++.+ +..+..+++|++|++++|. +.                
T Consensus        32 ~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~----------------   94 (285)
T 1ozn_A           32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR----------------   94 (285)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC----------------
T ss_pred             CCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc----------------
Confidence            35666777766 56666666677778888888888877766 4466777888888888775 32                


Q ss_pred             CCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcc
Q psy8551         362 TSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF  441 (581)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i  441 (581)
                                                       .+....|.++++|++|++++|.+++.++..+..+++|++|++++|.+
T Consensus        95 ---------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  141 (285)
T 1ozn_A           95 ---------------------------------SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL  141 (285)
T ss_dssp             ---------------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------------------------------ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcc
Confidence                                             22334566788899999999998888778888899999999999999


Q ss_pred             eeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-
Q psy8551         442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-  520 (581)
Q Consensus       442 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-  520 (581)
                      +...+..+..+++|++|++++ +.++.+....+..+++|++|++++| .+..+.+..+..+++|++|++++|.++.++. 
T Consensus       142 ~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  219 (285)
T 1ozn_A          142 QALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTE  219 (285)
T ss_dssp             CCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHH
T ss_pred             cccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCC-cccccCHhHccCcccccEeeCCCCcCCcCCHH
Confidence            888888888899999999988 4778888888999999999999999 7777777889999999999999999998874 


Q ss_pred             ccccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCCCcccccccccccCcccc
Q psy8551         521 SMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       521 ~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      .+..+++|++|++++||+.|+|+..|+.+|++..  ....+.|..|..++|+.+.+++..|+
T Consensus       220 ~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l  281 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             HcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHh
Confidence            4788999999999999999999999999999885  44556799999999999999999886

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=5.8e-30  Score=253.65  Aligned_cols=300  Identities=22%  Similarity=0.319  Sum_probs=241.0

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      ..|+..|.|..    ...|+.++..++.+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.+++..|.
T Consensus        22 ~~~~~~~~C~~----~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   97 (353)
T 2z80_A           22 SSNQASLSCDR----NGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFS   97 (353)
T ss_dssp             -----CCEECT----TSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred             CCCccCCCCCC----CeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcC
Confidence            34555555554    1125559999999999999999999999999999886 799999999999999999999888899


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAEL  168 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L  168 (581)
                      ++++|++|++++|.                       ++.+++..++++++|++|++++|.++.++. ..+..+++|++|
T Consensus        98 ~l~~L~~L~Ls~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           98 SLGSLEHLDLSYNY-----------------------LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             TCTTCCEEECCSSC-----------------------CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCCCCCEEECCCCc-----------------------CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence            99999999999986                       455666678899999999999999999887 678899999999


Q ss_pred             ECCCC-cceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc
Q psy8551         169 RVGLN-VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF  247 (581)
Q Consensus       169 ~L~~n-~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~  247 (581)
                      ++++| .+..+++..+.++++|+.|++++|.++...+..+..+++|++|++++|+++.++...+..+++|++|++++|.+
T Consensus       155 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l  234 (353)
T 2z80_A          155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL  234 (353)
T ss_dssp             EEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBC
T ss_pred             ECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcc
Confidence            99998 57888777899999999999999999988888899999999999999999888766666788999999999988


Q ss_pred             cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCC----CccccccccccCCCCCcEEecCCCCCcc
Q psy8551         248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP----KLKTIEEGALVGLPNLYHLNLKENAFTS  323 (581)
Q Consensus       248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~~~~~~~~L~~L~l~~~~l~~  323 (581)
                      +......+...                      .....++.++++++.    .+..++. .+..+++|+.|++++|.++.
T Consensus       235 ~~~~~~~l~~~----------------------~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~  291 (353)
T 2z80_A          235 DTFHFSELSTG----------------------ETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKS  291 (353)
T ss_dssp             TTCCCC----------------------------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCC
T ss_pred             ccccccccccc----------------------cccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCc
Confidence            76554322210                      112334455555442    1223433 57889999999999999999


Q ss_pred             ccccc-cCCCCcceEEccCCCCccCCc-hhhHHHHHhhc
Q psy8551         324 FSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRR  360 (581)
Q Consensus       324 ~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~~  360 (581)
                      +|..+ ..+++|++|++++|++.|.++ ..|+..+....
T Consensus       292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l~~~~~~~  330 (353)
T 2z80_A          292 VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKN  330 (353)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHT
T ss_pred             cCHHHHhcCCCCCEEEeeCCCccCcCCCcHHHHHHHHhc
Confidence            98864 789999999999999999986 67776665444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.96  E-value=2.4e-29  Score=249.22  Aligned_cols=306  Identities=19%  Similarity=0.299  Sum_probs=203.6

Q ss_pred             CCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551         137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL  216 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  216 (581)
                      .|+.....+.+++.++.+|.. +  .++|++|++++|.++.++...+.++++|+.|++++|.++.+.+..+..+++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~-~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSG-L--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTT-C--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCccccccc-c--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            355566678888888888763 2  2588999999999988887778889999999999999888887788888999999


Q ss_pred             ECCCCcCCccCccccCCCCCCCEEECCCCcccccCC-cccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCC
Q psy8551         217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP  295 (581)
Q Consensus       217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  295 (581)
                      ++++|+++.++...+..+++|++|++++|.+..++. ..+..+++|+.|++++|..+                       
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-----------------------  162 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-----------------------  162 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-----------------------
Confidence            999999998887778888999999999988887665 45666666666666654333                       


Q ss_pred             CccccccccccCCCCCcEEecCCCCCccc-cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCccc
Q psy8551         296 KLKTIEEGALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK  374 (581)
Q Consensus       296 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  374 (581)
                        +.++...+..+++|++|++++|.++.+ +..+..+++|++|++++|.                               
T Consensus       163 --~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-------------------------------  209 (353)
T 2z80_A          163 --TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-------------------------------  209 (353)
T ss_dssp             --CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-------------------------------
T ss_pred             --cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-------------------------------
Confidence              333333455556666666666655543 3334444444444444433                               


Q ss_pred             ccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccc---cC
Q psy8551         375 YKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF---KG  451 (581)
Q Consensus       375 ~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~---~~  451 (581)
                                                                ++..+...+..+++|++|++++|.+++.....+   ..
T Consensus       210 ------------------------------------------l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          210 ------------------------------------------HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             ------------------------------------------STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             ------------------------------------------cccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence                                                      222222222223333333333333332221111   11


Q ss_pred             CccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecccc-ccCCcceE
Q psy8551         452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRT  530 (581)
Q Consensus       452 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~  530 (581)
                      .+.++.+++.+                    +.++++ .+..++ .++..+++|++|++++|.++.+|..+ ..+++|++
T Consensus       248 ~~~l~~l~L~~--------------------~~l~~~-~l~~l~-~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~  305 (353)
T 2z80_A          248 NSLIKKFTFRN--------------------VKITDE-SLFQVM-KLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK  305 (353)
T ss_dssp             CCCCCEEEEES--------------------CBCCHH-HHHHHH-HHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cchhhcccccc--------------------ccccCc-chhhhH-HHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence            12222233222                    222223 333443 45778999999999999999999875 78999999


Q ss_pred             EecCCCcccccCc-hhHHHHHHhhcCC---CceeeCCCc
Q psy8551         531 IDIAENPIECGCN-ILWLREMLVRRNT---SAVFCNSPA  565 (581)
Q Consensus       531 L~l~~np~~c~c~-~~~~~~~~~~~~~---~~~~c~~~~  565 (581)
                      |++++||+.|+|+ +.|+..|.+....   ..+.|..|.
T Consensus       306 L~L~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C~~p~  344 (353)
T 2z80_A          306 IWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  344 (353)
T ss_dssp             EECCSSCBCCCHHHHHHHHHHHHHTTTTEESCCBBTTTC
T ss_pred             EEeeCCCccCcCCCcHHHHHHHHhccccCCCCcccCCCC
Confidence            9999999999997 8899999988533   245798873

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=1.1e-28  Score=236.78  Aligned_cols=234  Identities=27%  Similarity=0.378  Sum_probs=197.3

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEP   90 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~   90 (581)
                      +||..|.|.....+.+.|  .+.+++.+|..+++++++|+|++|.++.++. .+..+++|++|++++|.++.+.+..|..
T Consensus         1 ~CP~~C~C~~~~~~~~~c--~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~   78 (285)
T 1ozn_A            1 PCPGACVCYNEPKVTTSC--PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (285)
T ss_dssp             CCCTTCEEECSSSCEEEC--CSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCceECCCCCeEEEc--CcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC
Confidence            599999998644467899  9999999999999999999999999999874 6899999999999999999998889999


Q ss_pred             CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551          91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  170 (581)
Q Consensus        91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L  170 (581)
                      +++|++|++++|..                      ++.+.+..+..+++|++|++++|.++.++...+..+++|++|++
T Consensus        79 l~~L~~L~l~~n~~----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  136 (285)
T 1ozn_A           79 LALLEQLDLSDNAQ----------------------LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (285)
T ss_dssp             CTTCCEEECCSCTT----------------------CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccCCCEEeCCCCCC----------------------ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEEC
Confidence            99999999999852                      34445566788899999999999998887777888889999999


Q ss_pred             CCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccccc
Q psy8551         171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  250 (581)
Q Consensus       171 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  250 (581)
                      ++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|++|++++|.++++.+..+..+++|++|++++|.++.+
T Consensus       137 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence            99988888777788888888888888888888777788888888888888888887667788888888888888888776


Q ss_pred             CCcccCCCcccceeeecCC
Q psy8551         251 EAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~  269 (581)
                      ++..+..+++|+.+++++|
T Consensus       217 ~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSS
T ss_pred             CHHHcccCcccCEEeccCC
Confidence            6655666666666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=1.4e-28  Score=238.73  Aligned_cols=267  Identities=20%  Similarity=0.308  Sum_probs=163.7

Q ss_pred             CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecC--CCCCC
Q psy8551          13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIP--IGGFE   89 (581)
Q Consensus        13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~--~~~~~   89 (581)
                      ||..|.|..   ..+.|  .+.+++.+|..+++++++|+|++|.++.+|. .+.++++|++|++++|.++.+.  ...+.
T Consensus         1 CP~~C~C~~---~~l~c--~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~   75 (306)
T 2z66_A            1 CPSRCSCSG---TEIRC--NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF   75 (306)
T ss_dssp             CCTTCEEET---TEEEC--CSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHH
T ss_pred             CcCCCeeCC---CEEEc--CCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccc
Confidence            899999976   57999  9999999999999999999999999998886 4678888888888888776442  12344


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAEL  168 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L  168 (581)
                      .+++|++|++++|.+                       +.++. .+..+++|++|++++|.++.++. ..+..+++|++|
T Consensus        76 ~~~~L~~L~Ls~n~i-----------------------~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  131 (306)
T 2z66_A           76 GTTSLKYLDLSFNGV-----------------------ITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  131 (306)
T ss_dssp             SCSCCCEEECCSCSE-----------------------EEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEE
T ss_pred             cccccCEEECCCCcc-----------------------ccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEE
Confidence            566667776666642                       22211 24455666666666665555443 334445555555


Q ss_pred             ECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCc-cCccccCCCCCCCEEECCCCcc
Q psy8551         169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS-IPTKQLSKLTRLEELEIGQNGF  247 (581)
Q Consensus       169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~~~~  247 (581)
                      ++++|.+....+..+..+++|+.|++++|                        .+++ ..+..+..+++|++|++++|.+
T Consensus       132 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------------------------~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          132 DISHTHTRVAFNGIFNGLSSLEVLKMAGN------------------------SFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             ECTTSCCEECSTTTTTTCTTCCEEECTTC------------------------EEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             ECCCCcCCccchhhcccCcCCCEEECCCC------------------------ccccccchhHHhhCcCCCEEECCCCCc
Confidence            55555554444444444444444444444                        4433 2223344445555555555544


Q ss_pred             cccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-c
Q psy8551         248 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-E  326 (581)
Q Consensus       248 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~  326 (581)
                      +...+..+..+                         ++|++|++++| .+..++...+..+++|+.|++++|.++..+ .
T Consensus       188 ~~~~~~~~~~l-------------------------~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  241 (306)
T 2z66_A          188 EQLSPTAFNSL-------------------------SSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ  241 (306)
T ss_dssp             CEECTTTTTTC-------------------------TTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS
T ss_pred             CCcCHHHhcCC-------------------------CCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH
Confidence            44333323222                         23333333333 233333334566677777777777776543 3


Q ss_pred             cccCC-CCcceEEccCCCCccCCchhhHHHHHh
Q psy8551         327 SMLAW-PELRTIDIAENPIECGCNILWLREMLV  358 (581)
Q Consensus       327 ~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~  358 (581)
                      .+..+ ++|++|++++|++.|.+...|+..+..
T Consensus       242 ~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~  274 (306)
T 2z66_A          242 ELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIK  274 (306)
T ss_dssp             SCCCCCTTCCEEECTTCCEECSGGGHHHHHHHH
T ss_pred             HHHhhhccCCEEEccCCCeecccChHHHHHHHH
Confidence            55555 489999999999999988777666543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.95  E-value=6.9e-27  Score=226.87  Aligned_cols=251  Identities=16%  Similarity=0.146  Sum_probs=195.3

Q ss_pred             cCccEEEcccCCcc---cccccccCCCcccEEEcCC-CceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc
Q psy8551          45 PSIQRLVLSTNRIK---TVDSAIPIYLSLQHVDLSH-TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE  120 (581)
Q Consensus        45 ~~l~~L~L~~~~i~---~l~~~~~~~~~L~~L~ls~-~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~  120 (581)
                      .++++|+|+++.+.   .+|..+.++++|++|++++ |.+....+..+.++++|++|++++|.                 
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~-----------------  112 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-----------------  112 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEEC-----------------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCe-----------------
Confidence            58999999999998   4888999999999999995 88886666778999999999999876                 


Q ss_pred             ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCC-CCcEEEcCCCCc
Q psy8551         121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG-RLSALDLRGAGL  199 (581)
Q Consensus       121 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~L~~~~l  199 (581)
                            ++...+..+.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..++ +|+.|++++|.+
T Consensus       113 ------l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          113 ------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             ------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred             ------eCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence                  3444455688899999999999999866666888899999999999999866666777877 899999999988


Q ss_pred             cccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCcc
Q psy8551         200 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA  279 (581)
Q Consensus       200 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  279 (581)
                      ++..+..+..+. |++|++++|++++.++..+..+++|++|++++|.++...+. +.                       
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~-----------------------  241 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VG-----------------------  241 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CC-----------------------
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-cc-----------------------
Confidence            877777777776 88889888888877777788888888888888877643332 22                       


Q ss_pred             CCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCcc
Q psy8551         280 FADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC  346 (581)
Q Consensus       280 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~  346 (581)
                        .+++|++|++++| .+....+..+..+++|+.|++++|.+++..+....+++|+.+++.+|+.-|
T Consensus       242 --~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          242 --LSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             --CCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             --ccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence              3356666666666 344223335777888888888888887333333677888888888887543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.94  E-value=5.1e-27  Score=218.86  Aligned_cols=226  Identities=23%  Similarity=0.333  Sum_probs=194.3

Q ss_pred             hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCc-eeecCCCC
Q psy8551          10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTT-WLIIPIGG   87 (581)
Q Consensus        10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~-l~~~~~~~   87 (581)
                      +++||..|.|..|....+.|  .+  ++.+|. +++++++|+|++|+++.++. .|.++++|++|++++|. ++.++...
T Consensus         1 ~~~cp~~C~C~~~~~~~v~c--~~--l~~ip~-~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~   75 (239)
T 2xwt_C            1 MGCSSPPCECHQEEDFRVTC--KD--IQRIPS-LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS   75 (239)
T ss_dssp             --CCSSSCSEEECSTTEEEE--CS--CSSCCC-CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTT
T ss_pred             CCCCCCCCeeCCCCcceeEc--cC--ccccCC-CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhH
Confidence            46899999998766677789  55  999999 88999999999999999986 78999999999999997 99999889


Q ss_pred             CCCCCcccEEeCCC-CCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCc
Q psy8551          88 FEPQEKLVELQLNH-NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLA  166 (581)
Q Consensus        88 ~~~l~~L~~L~l~~-n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~  166 (581)
                      |..+++|++|++++ |.                       ++.+++..|.++++|++|++++|.++.++.  +..+++|+
T Consensus        76 f~~l~~L~~L~l~~~n~-----------------------l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~  130 (239)
T 2xwt_C           76 FYNLSKVTHIEIRNTRN-----------------------LTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTD  130 (239)
T ss_dssp             EESCTTCCEEEEEEETT-----------------------CCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCC
T ss_pred             cCCCcCCcEEECCCCCC-----------------------eeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccc
Confidence            99999999999998 64                       556667778899999999999999998775  77788888


Q ss_pred             ---EEECCCC-cceeccCCcCCCCCCCc-EEEcCCCCccccCccccCCCCCCcEEECCCCc-CCccCccccCCC-CCCCE
Q psy8551         167 ---ELRVGLN-VFTTLADGAFNGLGRLS-ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNR-LQSIPTKQLSKL-TRLEE  239 (581)
Q Consensus       167 ---~L~L~~n-~~~~~~~~~l~~l~~L~-~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l-~~L~~  239 (581)
                         +|++++| .++.+++..|.++++|+ .|++++|+++.++...+.. ++|+.|++++|+ ++.+++..+..+ ++|++
T Consensus       131 ~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~  209 (239)
T 2xwt_C          131 IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSL  209 (239)
T ss_dssp             SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSE
T ss_pred             cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcE
Confidence               9999999 89999888899999999 9999999998887766666 789999999995 999888888888 89999


Q ss_pred             EECCCCcccccCCcccCCCcccceeeecCC
Q psy8551         240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  269 (581)
                      |++++|.++.++..   .+++|+.|.+.++
T Consensus       210 L~l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          210 LDVSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             EECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             EECCCCccccCChh---HhccCceeeccCc
Confidence            99999988877654   4556777776654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=7.8e-30  Score=262.87  Aligned_cols=388  Identities=19%  Similarity=0.214  Sum_probs=217.8

Q ss_pred             CcCccEEEcccCCcccccc--cccCCCcccEEEcCCCceeecC----CCCCCCCCcccEEeCCCCCCCCcccccccCCcc
Q psy8551          44 NPSIQRLVLSTNRIKTVDS--AIPIYLSLQHVDLSHTTWLIIP----IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPR  117 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~~l~~--~~~~~~~L~~L~ls~~~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  117 (581)
                      ++++++|+|+++++++.+.  .+..+++|++|++++|.++...    ...+..+++|++|++++|.+             
T Consensus         2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-------------   68 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-------------   68 (461)
T ss_dssp             CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-------------
T ss_pred             CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-------------
Confidence            5688899999998876543  3778888999999988877321    23466678888888888763             


Q ss_pred             cccccCcccccccchhh-cCCCC----CCcEEeCCCCcCcccC----CcccccCccCcEEECCCCcceeccCC-----cC
Q psy8551         118 RVEIFGQNRISRIDQAC-FEGLT----ALRILYLDDNQLRSVP----TPSFIYLGMLAELRVGLNVFTTLADG-----AF  183 (581)
Q Consensus       118 ~L~~l~~~~l~~~~~~~-l~~~~----~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~L~~n~~~~~~~~-----~l  183 (581)
                                ++..... +..++    +|++|++++|.++...    ...+..+++|++|++++|.++.....     ..
T Consensus        69 ----------~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~  138 (461)
T 1z7x_W           69 ----------GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL  138 (461)
T ss_dssp             ----------HHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred             ----------ChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence                      1111111 11222    5777777777776422    33456666777777777766532211     12


Q ss_pred             CCCCCCcEEEcCCCCccccC----ccccCCCCCCcEEECCCCcCCccCccccC-----CCCCCCEEECCCCcccccCCcc
Q psy8551         184 NGLGRLSALDLRGAGLTNIS----DNAFRGLSGLRSLVLTDNRLQSIPTKQLS-----KLTRLEELEIGQNGFSMLEAGC  254 (581)
Q Consensus       184 ~~l~~L~~L~L~~~~l~~~~----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~~~~  254 (581)
                      ...++|+.|++++|.++...    +..+..+++|++|++++|.++......+.     ..++|++|++++|.++......
T Consensus       139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  218 (461)
T 1z7x_W          139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD  218 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred             cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence            22445666666666655433    22333455666666666655533221121     2345556666555444321000


Q ss_pred             cCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc-----cccccCCCCCcEEecCCCCCcc-----c
Q psy8551         255 FKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE-----EGALVGLPNLYHLNLKENAFTS-----F  324 (581)
Q Consensus       255 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~l~~-----~  324 (581)
                      +                     ...+..+++|++|++++| .+++..     ...+..+++|++|++++|.++.     +
T Consensus       219 l---------------------~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          219 L---------------------CGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             H---------------------HHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             H---------------------HHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence            0                     111233455666666666 333321     2223356677777777777764     4


Q ss_pred             cccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCC
Q psy8551         325 SESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGL  404 (581)
Q Consensus       325 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~  404 (581)
                      +..+..+++|++|++++|.+..... ..                                           +........
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~-~~-------------------------------------------l~~~l~~~~  312 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGA-RL-------------------------------------------LCETLLEPG  312 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHH-HH-------------------------------------------HHHHHTSTT
T ss_pred             HHHHhhCCCcceEECCCCCCchHHH-HH-------------------------------------------HHHHhccCC
Confidence            5555566777777777775531100 00                                           000111123


Q ss_pred             CCCCEEEcCCCcCCccC----hhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccC-CCCC
Q psy8551         405 SGLRSLVLTDNRLQSIP----TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA-DNLN  479 (581)
Q Consensus       405 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~-~~~~  479 (581)
                      ++|++|++++|.++...    +..+..+++|++|++++|.+++..+..+..                     .+. ..++
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---------------------~l~~~~~~  371 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------------------GLGQPGSV  371 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH---------------------HHTSTTCC
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH---------------------HHcCCCCc
Confidence            56777777777766542    234555677777777777665543322211                     111 2457


Q ss_pred             CCeeeCCCCCCce-----eecCCccCCCCCccEEEcCCCcceee-----cccccc-CCcceEEecCCCcccccCc
Q psy8551         480 LETLTLNKNPKLK-----IIEEDALVGLPNLYHLNLKENAFTSF-----SESMLA-WPELRTIDIAENPIECGCN  543 (581)
Q Consensus       480 L~~L~l~~~~~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~l-----~~~~~~-~~~L~~L~l~~np~~c~c~  543 (581)
                      |++|++++| .++     .+ +..+..+++|++|++++|.++..     .+.+.. ..+|+.|.+.++.+.+...
T Consensus       372 L~~L~L~~n-~i~~~~~~~l-~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~  444 (461)
T 1z7x_W          372 LRVLWLADC-DVSDSSCSSL-AATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEME  444 (461)
T ss_dssp             CCEEECTTS-CCCHHHHHHH-HHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHH
T ss_pred             eEEEECCCC-CCChhhHHHH-HHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHH
Confidence            777777777 455     34 34566788999999999988732     222222 3468888888888866443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.94  E-value=2.1e-25  Score=211.79  Aligned_cols=237  Identities=26%  Similarity=0.472  Sum_probs=194.7

Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCC
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS  363 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~  363 (581)
                      ..+.++++++ .++.+|.. +  .+++++|++++|.++.++. .+..+++|++|++++|.+.                  
T Consensus        17 ~~~~l~~~~~-~l~~ip~~-~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------   74 (270)
T 2o6q_A           17 NKNSVDCSSK-KLTAIPSN-I--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ------------------   74 (270)
T ss_dssp             TTTEEECTTS-CCSSCCSC-C--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS------------------
T ss_pred             CCCEEEccCC-CCCccCCC-C--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC------------------
Confidence            4567777776 56666642 2  2578888888888887765 6777888888888887653                  


Q ss_pred             ceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee
Q psy8551         364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~  443 (581)
                                                     .++...|.++++|++|++++|.++.+++..+..+++|++|++++|.++.
T Consensus        75 -------------------------------~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           75 -------------------------------TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             -------------------------------CCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             -------------------------------eeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence                                           2344556778899999999999998888888899999999999999999


Q ss_pred             eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-c
Q psy8551         444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-M  522 (581)
Q Consensus       444 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~  522 (581)
                      ..+..+..+++|++|++++ +.++.++...|..+++|++|++++| .+..+++..+..+++|++|++++|.++.++.. +
T Consensus       124 ~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  201 (270)
T 2o6q_A          124 LPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF  201 (270)
T ss_dssp             CCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             eCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence            8888889999999999998 4677887778899999999999999 88888888899999999999999999988864 6


Q ss_pred             ccCCcceEEecCCCcccccCc-hhHHHHHHhhcC------CCceeeCCCcccccccccccCcccc
Q psy8551         523 LAWPELRTIDIAENPIECGCN-ILWLREMLVRRN------TSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       523 ~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~------~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      ..+++|+.|++++|||.|+|+ ..|+.+|++...      ...+.|+.    .|+.+.+++++|.
T Consensus       202 ~~l~~L~~L~l~~N~~~c~c~~~~~~~~~l~~~~~~~~~~~~~~~C~~----~~~~~~~~~~~~~  262 (270)
T 2o6q_A          202 DSLEKLKMLQLQENPWDCTCNGIIYMAKWLKKKADEGLGGVDTAGCEK----GGKAVLEITEKDA  262 (270)
T ss_dssp             TTCTTCCEEECCSSCBCCSSSSSHHHHHHHHHHHHTTCSSTTCCBBSS----SCSBGGGCCTTTT
T ss_pred             ccccCCCEEEecCCCeeCCCccHHHHHHHHHhhccccccCccccccCC----CCeEeEEecchhh
Confidence            678999999999999999998 778888887642      23346764    4799999988874

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.94  E-value=1.8e-29  Score=260.09  Aligned_cols=355  Identities=19%  Similarity=0.208  Sum_probs=217.9

Q ss_pred             CCCcEEeCCCCcCcccCCcc-cccCccCcEEECCCCcceec----cCCcCCCCCCCcEEEcCCCCccccCcccc-CCCC-
Q psy8551         139 TALRILYLDDNQLRSVPTPS-FIYLGMLAELRVGLNVFTTL----ADGAFNGLGRLSALDLRGAGLTNISDNAF-RGLS-  211 (581)
Q Consensus       139 ~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~~~l~~~~~~~l-~~~~-  211 (581)
                      ++|++|+++++.++...... +..+++|++|++++|.++..    .+..+..+++|++|++++|.++......+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            34555555555554433222 34455555555555554421    11234445556666665555544322111 1122 


Q ss_pred             ---CCcEEECCCCcCCcc----CccccCCCCCCCEEECCCCcccccCCcc-----cCCCcccceeeecCCCCceeec---
Q psy8551         212 ---GLRSLVLTDNRLQSI----PTKQLSKLTRLEELEIGQNGFSMLEAGC-----FKGLSYLKRLEITGASNLTRVR---  276 (581)
Q Consensus       212 ---~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~---  276 (581)
                         +|++|++++|+++..    .+..+..+++|++|++++|.+.......     ....++|+.|++++|. ++...   
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~  161 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEP  161 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHH
Confidence               466666666655531    1244555666666666666554322111     1223456666665542 22211   


Q ss_pred             -CccCCCCCCCCEEeCCCCCCcccccccccc-----CCCCCcEEecCCCCCcc-----ccccccCCCCcceEEccCCCCc
Q psy8551         277 -KGAFADNLNLETLTLNKNPKLKTIEEGALV-----GLPNLYHLNLKENAFTS-----FSESMLAWPELRTIDIAENPIE  345 (581)
Q Consensus       277 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~~~  345 (581)
                       ...+..+++|++|++++| .++......+.     ..++|++|++++|.++.     ++..+..+++|++|++++|.+.
T Consensus       162 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  240 (461)
T 1z7x_W          162 LASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG  240 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCC
Confidence             223444578888888888 35543332232     35689999999998875     4566677889999999998764


Q ss_pred             cCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccC----
Q psy8551         346 CGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP----  421 (581)
Q Consensus       346 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~----  421 (581)
                      ...                                            ...+....+..+++|++|++++|.++...    
T Consensus       241 ~~~--------------------------------------------~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  276 (461)
T 1z7x_W          241 DVG--------------------------------------------MAELCPGLLHPSSRLRTLWIWECGITAKGCGDL  276 (461)
T ss_dssp             HHH--------------------------------------------HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             hHH--------------------------------------------HHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence            210                                            01111222334788999999999988642    


Q ss_pred             hhhhcCCCCCcEeecCCCcceeecccccc-----CCccccEEeecCCCCeeEe----cCCccCCCCCCCeeeCCCCCCce
Q psy8551         422 TKQLSKLTRLEELEIGQNGFSMLEAGCFK-----GLSYLKRLEITGASNLTRV----RKGAFADNLNLETLTLNKNPKLK  492 (581)
Q Consensus       422 ~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~l~~~~~l~~~----~~~~~~~~~~L~~L~l~~~~~l~  492 (581)
                      +..+..+++|++|++++|.+++.....+.     ..++|++|++++|. ++..    .+..+..+++|++|++++| .++
T Consensus       277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~  354 (461)
T 1z7x_W          277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLE  354 (461)
T ss_dssp             HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred             HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence            35677799999999999988765443332     33689999999864 4433    2334566799999999999 666


Q ss_pred             eecCCccC-----CCCCccEEEcCCCcce-----eeccccccCCcceEEecCCCccccc
Q psy8551         493 IIEEDALV-----GLPNLYHLNLKENAFT-----SFSESMLAWPELRTIDIAENPIECG  541 (581)
Q Consensus       493 ~~~~~~~~-----~l~~L~~L~l~~n~l~-----~l~~~~~~~~~L~~L~l~~np~~c~  541 (581)
                      ......+.     ..++|++|++++|.++     .++..+..+++|++|++++|++...
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence            54333232     2789999999999998     6788888899999999999999653

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.94  E-value=2.6e-25  Score=212.92  Aligned_cols=216  Identities=25%  Similarity=0.385  Sum_probs=172.9

Q ss_pred             CCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhh
Q psy8551         281 ADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVR  359 (581)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  359 (581)
                      ..++++++++++++ .++.++...   .+.++.|++++|.++.++ ..+..+++|++|++++|.+..             
T Consensus         7 ~~l~~l~~l~~~~~-~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-------------   69 (290)
T 1p9a_G            7 SKVASHLEVNCDKR-NLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-------------   69 (290)
T ss_dssp             ECSTTCCEEECTTS-CCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-------------
T ss_pred             cccCCccEEECCCC-CCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-------------
Confidence            34456667777666 566665432   256777777777777654 356677777777777776531             


Q ss_pred             cCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC
Q psy8551         360 RNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN  439 (581)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~  439 (581)
                                                          +..  ...+++|++|++++|.++.++ ..+..+++|++|++++|
T Consensus        70 ------------------------------------~~~--~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~l~~N  110 (290)
T 1p9a_G           70 ------------------------------------LQV--DGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFN  110 (290)
T ss_dssp             ------------------------------------EEC--CSCCTTCCEEECCSSCCSSCC-CCTTTCTTCCEEECCSS
T ss_pred             ------------------------------------ccC--CCCCCcCCEEECCCCcCCcCc-hhhccCCCCCEEECCCC
Confidence                                                111  134678888888888888766 46778888899999988


Q ss_pred             cceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec
Q psy8551         440 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS  519 (581)
Q Consensus       440 ~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~  519 (581)
                      +++..++..|..+++|++|++++ +.++.+++..|..+++|++|++++| .++.+++..+..+++|++|++++|.++.+|
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip  188 (290)
T 1p9a_G          111 RLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIP  188 (290)
T ss_dssp             CCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCcCCccC
Confidence            88888888888889999999988 5777787788888999999999999 888998888899999999999999999999


Q ss_pred             cccccCCcceEEecCCCcccccCchhHHHHHHhhc
Q psy8551         520 ESMLAWPELRTIDIAENPIECGCNILWLREMLVRR  554 (581)
Q Consensus       520 ~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~  554 (581)
                      ..+...++|+.+++++|||.|+|++.||.+|++++
T Consensus       189 ~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          189 KGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             TTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             hhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence            99999999999999999999999999999999863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=4.3e-25  Score=209.69  Aligned_cols=209  Identities=27%  Similarity=0.446  Sum_probs=184.7

Q ss_pred             CCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCc
Q psy8551          15 NPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEK   93 (581)
Q Consensus        15 ~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~   93 (581)
                      ..|.|.. ....+.|  .+..++.+|..+++++++|+|++|+++.++. .|.++++|++|++++|.++.++...|..+++
T Consensus        10 ~~C~c~~-~~~~l~~--~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~   86 (270)
T 2o6q_A           10 GVCSCNN-NKNSVDC--SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN   86 (270)
T ss_dssp             CSBEEET-TTTEEEC--TTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTT
T ss_pred             CCCEeCC-CCCEEEc--cCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCC
Confidence            4477754 4567899  9999999999999999999999999998875 7899999999999999999999888999999


Q ss_pred             ccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCC
Q psy8551          94 LVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN  173 (581)
Q Consensus        94 L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n  173 (581)
                      |++|++++|.                       ++.+++..|.++++|++|++++|.++.++...+..+++|++|++++|
T Consensus        87 L~~L~l~~n~-----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  143 (270)
T 2o6q_A           87 LETLWVTDNK-----------------------LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN  143 (270)
T ss_dssp             CCEEECCSSC-----------------------CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEECCCCc-----------------------CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC
Confidence            9999999986                       44555666888999999999999999998878889999999999999


Q ss_pred             cceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccc
Q psy8551         174 VFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM  249 (581)
Q Consensus       174 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~  249 (581)
                      .++.++...+..+++|+.|++++|.++.+.+..+..+++|++|++++|+++.++...+..+++|+.|++++|.+..
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            9998888778899999999999999998888778889999999999999999887788889999999999987653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=2.8e-25  Score=211.93  Aligned_cols=227  Identities=26%  Similarity=0.336  Sum_probs=181.1

Q ss_pred             CCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcc
Q psy8551          16 PYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL   94 (581)
Q Consensus        16 ~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L   94 (581)
                      +|.+.. ....+.|  .+..+..+|..+++++++|+|++|.++.++. .+.++++|++|++++|.++.++...|..+++|
T Consensus         2 ~C~~~~-~~~~~~c--~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L   78 (276)
T 2z62_A            2 PCVEVV-PNITYQC--MELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHL   78 (276)
T ss_dssp             CSEEEE-TTTEEEC--TTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTC
T ss_pred             Cceecc-CCceEEe--cCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCC
Confidence            455443 3457889  9999999999999999999999999998876 78999999999999999999998889999999


Q ss_pred             cEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCc
Q psy8551          95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV  174 (581)
Q Consensus        95 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~  174 (581)
                      ++|++++|.                       ++.+.+..|.++++|++|++++|.+..++...+..+++|++|++++|.
T Consensus        79 ~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  135 (276)
T 2z62_A           79 STLILTGNP-----------------------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL  135 (276)
T ss_dssp             CEEECTTCC-----------------------CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             CEEECCCCc-----------------------cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCc
Confidence            999999986                       445556668888999999999999888877678888889999998888


Q ss_pred             ceecc-CCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc----EEECCCCcCCccCccccCCCCCCCEEECCCCcccc
Q psy8551         175 FTTLA-DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR----SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM  249 (581)
Q Consensus       175 ~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~  249 (581)
                      ++.+. +..+..+++|+.|++++|+++.+.+..+..+++|+    .|++++|.++.+++..+.. .+|++|++++|.++.
T Consensus       136 l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS  214 (276)
T ss_dssp             CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred             cceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence            87643 45677888888888888888877766666555555    7888888888777554443 478888888887776


Q ss_pred             cCCcccCCCcccceeeecCC
Q psy8551         250 LEAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       250 ~~~~~~~~~~~L~~L~l~~~  269 (581)
                      ++...+..+++|+.+++++|
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSS
T ss_pred             cCHhHhcccccccEEEccCC
Confidence            66655666666666666554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1.7e-25  Score=217.14  Aligned_cols=254  Identities=20%  Similarity=0.215  Sum_probs=168.3

Q ss_pred             CCCcEEECCCCcCCc--cCccccCCCCCCCEEECCC-CcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCC
Q psy8551         211 SGLRSLVLTDNRLQS--IPTKQLSKLTRLEELEIGQ-NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE  287 (581)
Q Consensus       211 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  287 (581)
                      .+++.|+++++.+++  ..+..+..+++|++|++++ |.+....+..+..+++|+.|++++| .+....+.         
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~---------  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPD---------  119 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCG---------
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCH---------
Confidence            467888888888875  3445677788888888874 6666555555666666666666554 22222222         


Q ss_pred             EEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCcee
Q psy8551         288 TLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVF  366 (581)
Q Consensus       288 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~  366 (581)
                                      .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.                   
T Consensus       120 ----------------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-------------------  164 (313)
T 1ogq_A          120 ----------------FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA-------------------  164 (313)
T ss_dssp             ----------------GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE-------------------
T ss_pred             ----------------HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCc-------------------
Confidence                            3455555555555555555 3444555555666666655544210                   


Q ss_pred             ecCCCcccccccccCCccccccCCCCccccCccccCCCC-CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551         367 CNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  445 (581)
Q Consensus       367 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~  445 (581)
                                                    ....+..++ .|+.|++++|.+++..+..+..++ |++|++++|.+++..
T Consensus       165 ------------------------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~  213 (313)
T 1ogq_A          165 ------------------------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA  213 (313)
T ss_dssp             ------------------------------CCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred             ------------------------------CCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence                                          011233344 677777777777655556666665 777777777777777


Q ss_pred             cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCccee-ecccccc
Q psy8551         446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS-FSESMLA  524 (581)
Q Consensus       446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~  524 (581)
                      +..+..+++|++|++++| .+....+. +..+++|++|++++| .+....+..+..+++|++|++++|++++ +|. ...
T Consensus       214 ~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~  289 (313)
T 1ogq_A          214 SVLFGSDKNTQKIHLAKN-SLAFDLGK-VGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGN  289 (313)
T ss_dssp             GGGCCTTSCCSEEECCSS-EECCBGGG-CCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STT
T ss_pred             CHHHhcCCCCCEEECCCC-ceeeecCc-ccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCC-Ccc
Confidence            777777777777777764 34333322 667789999999999 5554446778999999999999999994 555 478


Q ss_pred             CCcceEEecCCCcccccCch
Q psy8551         525 WPELRTIDIAENPIECGCNI  544 (581)
Q Consensus       525 ~~~L~~L~l~~np~~c~c~~  544 (581)
                      +++|+.+++++||..|+-+.
T Consensus       290 l~~L~~l~l~~N~~lc~~p~  309 (313)
T 1ogq_A          290 LQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             GGGSCGGGTCSSSEEESTTS
T ss_pred             ccccChHHhcCCCCccCCCC
Confidence            99999999999999887543

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.3e-24  Score=228.00  Aligned_cols=270  Identities=24%  Similarity=0.277  Sum_probs=218.8

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEP   90 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~   90 (581)
                      .+||..|.|.....+.+.|  ++..++.+|..+++++++|+|++|.++.+|.   .+++|++|++++|+++.++.    .
T Consensus        29 ~~~~~~~~c~~~~l~~L~l--s~n~L~~lp~~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~   99 (622)
T 3g06_A           29 AVVQKMRACLNNGNAVLNV--GESGLTTLPDCLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----L   99 (622)
T ss_dssp             HHHHHHHHHHHHCCCEEEC--CSSCCSCCCSCCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----C
T ss_pred             ccCcccccccCCCCcEEEe--cCCCcCccChhhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----C
Confidence            4566677776534567888  9999999999999999999999999999987   67899999999999998885    6


Q ss_pred             CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551          91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  170 (581)
Q Consensus        91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L  170 (581)
                      +++|++|++++|.+                       +.++.    .+++|+.|++++|+++.++.    .+++|++|++
T Consensus       100 l~~L~~L~Ls~N~l-----------------------~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~L  148 (622)
T 3g06_A          100 PPGLLELSIFSNPL-----------------------THLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSV  148 (622)
T ss_dssp             CTTCCEEEECSCCC-----------------------CCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEEC
T ss_pred             CCCCCEEECcCCcC-----------------------CCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEEC
Confidence            78999999999864                       22322    45788899999998888775    2478999999


Q ss_pred             CCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccccc
Q psy8551         171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  250 (581)
Q Consensus       171 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  250 (581)
                      ++|.+++++.    .+++|+.|++++|.++.++    ..+++|+.|++++|+++.++.    .+++|+.|++++|.++.+
T Consensus       149 s~N~l~~l~~----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l  216 (622)
T 3g06_A          149 SDNQLASLPA----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSL  216 (622)
T ss_dssp             CSSCCSCCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC
T ss_pred             cCCcCCCcCC----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCccccc
Confidence            9998887653    3468889999999888765    346789999999998888774    247889999999988866


Q ss_pred             CCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccC
Q psy8551         251 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA  330 (581)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~  330 (581)
                      +.    .+++|+.|++++| .++.++    ..+++|+.|++++| .++.++.    .+++|+.|++++|.++.+|..+..
T Consensus       217 ~~----~~~~L~~L~Ls~N-~L~~lp----~~l~~L~~L~Ls~N-~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~  282 (622)
T 3g06_A          217 PA----LPSGLKELIVSGN-RLTSLP----VLPSELKELMVSGN-RLTSLPM----LPSGLLSLSVYRNQLTRLPESLIH  282 (622)
T ss_dssp             CC----CCTTCCEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCCSCCGGGGG
T ss_pred             CC----CCCCCCEEEccCC-ccCcCC----CCCCcCcEEECCCC-CCCcCCc----ccccCcEEeCCCCCCCcCCHHHhh
Confidence            54    2477899999886 455544    34578999999999 6777765    568999999999999999998999


Q ss_pred             CCCcceEEccCCCCcc
Q psy8551         331 WPELRTIDIAENPIEC  346 (581)
Q Consensus       331 ~~~L~~L~l~~~~~~~  346 (581)
                      +++|+.|++++|++.+
T Consensus       283 l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          283 LSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SCTTCEEECCSCCCCH
T ss_pred             ccccCEEEecCCCCCC
Confidence            9999999999999864

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.92  E-value=2.2e-24  Score=205.71  Aligned_cols=228  Identities=23%  Similarity=0.402  Sum_probs=149.9

Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCC
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS  363 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~  363 (581)
                      ++++|++++| .++.++...+..+++|++|++++|.++.++. .+..+++|++|++++|.+.                  
T Consensus        29 ~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------------------   89 (276)
T 2z62_A           29 STKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ------------------   89 (276)
T ss_dssp             TCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC------------------
T ss_pred             CccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC------------------
Confidence            4555555555 4445544445555666666666665555443 4455556666666655442                  


Q ss_pred             ceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee
Q psy8551         364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~  443 (581)
                                                     .+....|.++++|++|++++|.+.+.++..+..+++|++|++++|.++.
T Consensus        90 -------------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  138 (276)
T 2z62_A           90 -------------------------------SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS  138 (276)
T ss_dssp             -------------------------------EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCC
T ss_pred             -------------------------------ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccce
Confidence                                           1222334555666666666666666555456666666666666666665


Q ss_pred             ec-cccccCCccccEEeecCCCCeeEecCCccCCCCCCC----eeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee
Q psy8551         444 LE-AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE----TLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF  518 (581)
Q Consensus       444 ~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l  518 (581)
                      .. +..+..+++|++|++++ +.++.+....+..+++|+    +|++++| .+..+++..+.. .+|++|++++|.++.+
T Consensus       139 ~~l~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~-~~L~~L~L~~n~l~~~  215 (276)
T 2z62_A          139 FKLPEYFSNLTNLEHLDLSS-NKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKE-IRLKELALDTNQLKSV  215 (276)
T ss_dssp             CCCCGGGGGCTTCCEEECCS-SCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCS-CCEEEEECCSSCCSCC
T ss_pred             ecCchhhccCCCCCEEECCC-CCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCC-CcccEEECCCCceeec
Confidence            42 55566666666666666 345555555555555555    7899999 778887665544 4899999999999998


Q ss_pred             ccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhc---CCCceeeCCCc
Q psy8551         519 SES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRR---NTSAVFCNSPA  565 (581)
Q Consensus       519 ~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~---~~~~~~c~~~~  565 (581)
                      +.. +..+++|++|++++||+.|+|+ +.|+..|.+..   ......|..|.
T Consensus       216 ~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~~~~~~~~~~~~~~C~~~~  267 (276)
T 2z62_A          216 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKCSGSG  267 (276)
T ss_dssp             CTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGBCSCCBBTTTC
T ss_pred             CHhHhcccccccEEEccCCcccccCCchHHHHHHHHhcccccCCCceeeCCC
Confidence            865 4679999999999999999997 78999998774   33445788774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.92  E-value=1.4e-24  Score=198.89  Aligned_cols=191  Identities=29%  Similarity=0.538  Sum_probs=169.4

Q ss_pred             cccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCC
Q psy8551         386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN  465 (581)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  465 (581)
                      +.+....+..++...   .++++.|++++|.++.+++..|..+++|++|++++|.++...+..|..+++|++|++++ +.
T Consensus        16 v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~-N~   91 (220)
T 2v9t_B           16 VDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG-NK   91 (220)
T ss_dssp             EECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS-SC
T ss_pred             EEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC-Cc
Confidence            344455566665543   26899999999999999988899999999999999999999999999999999999998 57


Q ss_pred             eeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcccccCch
Q psy8551         466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNI  544 (581)
Q Consensus       466 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~c~~  544 (581)
                      ++.++...|.++++|++|++++| .+..+++..+..+++|++|++++|.++.++. .+..+++|++|++++|||.|+|++
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            88888888999999999999999 8888888889999999999999999998875 477799999999999999999999


Q ss_pred             hHHHHHHhhc--CCCceeeCCCcccccccccccCccccC
Q psy8551         545 LWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDLG  581 (581)
Q Consensus       545 ~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~~~~  581 (581)
                      +|+.+|....  ....+.|..|..++|+.+.+++++|+.
T Consensus       171 ~~l~~~l~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~~  209 (220)
T 2v9t_B          171 KWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFR  209 (220)
T ss_dssp             HHHHHHHHHCCCBCSCCBEEESGGGTTCBGGGSCGGGCC
T ss_pred             HHHHHHHHhCCCCccCCCcCCchHHcCCchhhCCHHHCc
Confidence            9999998764  345568999999999999999998863

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.92  E-value=7.6e-27  Score=248.49  Aligned_cols=326  Identities=15%  Similarity=0.096  Sum_probs=177.5

Q ss_pred             cCccCcEEECCCCcceeccC----CcCCCCCCCcEEEcCCCCccccCc----cccCCCCCCcEEECCCCcCCccCccccC
Q psy8551         161 YLGMLAELRVGLNVFTTLAD----GAFNGLGRLSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQSIPTKQLS  232 (581)
Q Consensus       161 ~~~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~~~~~~~~  232 (581)
                      .+++|++|++++|.+++...    ..+..+++|+.|+++++.++.+..    ..+..+++|+.|++.+|.+.+++ ..+.
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~  240 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFK  240 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHh
Confidence            45556666665555443211    112345556666666655542222    12234566666666666555544 3455


Q ss_pred             CCCCCCEEECCCCccc---ccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc-cccccCC
Q psy8551         233 KLTRLEELEIGQNGFS---MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE-EGALVGL  308 (581)
Q Consensus       233 ~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~  308 (581)
                      .+++|++|+++.....   ......+..+++|+.+.+.+.. . ...+..+..+++|++|++++|. ++... ...+..+
T Consensus       241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~-~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~  317 (592)
T 3ogk_B          241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-P-NEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKC  317 (592)
T ss_dssp             HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-T-TTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTC
T ss_pred             hhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-h-hHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhC
Confidence            5666666666532111   1111234455566666665421 1 1112234455677777777764 33222 1235667


Q ss_pred             CCCcEEecCCCCCc--cccccccCCCCcceEEccC-----------CCCccCCchhhHHHHHhhcCCCceeecCCCcccc
Q psy8551         309 PNLYHLNLKENAFT--SFSESMLAWPELRTIDIAE-----------NPIECGCNILWLREMLVRRNTSAVFCNSPAPLKY  375 (581)
Q Consensus       309 ~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  375 (581)
                      ++|+.|++. +.+.  .++.....+++|++|++++           +.+...                            
T Consensus       318 ~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----------------------------  368 (592)
T 3ogk_B          318 PNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----------------------------  368 (592)
T ss_dssp             TTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----------------------------
T ss_pred             cCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----------------------------
Confidence            777777777 3333  2333334567777777773           111100                            


Q ss_pred             cccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcC-CCCCcEeecC----CCcceee-----c
Q psy8551         376 KSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSK-LTRLEELEIG----QNGFSML-----E  445 (581)
Q Consensus       376 ~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~----~~~i~~~-----~  445 (581)
                                         . ....+.++++|++|+++.+.+++.....+.. +++|++|+++    .+.+++.     .
T Consensus       369 -------------------~-~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~  428 (592)
T 3ogk_B          369 -------------------G-LIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGV  428 (592)
T ss_dssp             -------------------H-HHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHH
T ss_pred             -------------------H-HHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHH
Confidence                               0 0011223677888888777776655455544 7788888885    4555543     1


Q ss_pred             cccccCCccccEEeecCCCC-eeEecCCcc-CCCCCCCeeeCCCCCCcee-ecCCccCCCCCccEEEcCCCccee--ecc
Q psy8551         446 AGCFKGLSYLKRLEITGASN-LTRVRKGAF-ADNLNLETLTLNKNPKLKI-IEEDALVGLPNLYHLNLKENAFTS--FSE  520 (581)
Q Consensus       446 ~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~-~~~~~L~~L~l~~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~--l~~  520 (581)
                      ...+..+++|++|+++.|.. +++.....+ ..+++|++|++++|. ++. ..+..+.++++|++|++++|.++.  ++.
T Consensus       429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            22245677888888866442 333222222 246778888888883 433 222345677888888888888763  444


Q ss_pred             ccccCCcceEEecCCCcccc
Q psy8551         521 SMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       521 ~~~~~~~L~~L~l~~np~~c  540 (581)
                      .+..+++|++|++++|+++.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCT
T ss_pred             HHHhcCccCeeECcCCcCCH
Confidence            45567888888888888654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.91  E-value=2.2e-23  Score=195.63  Aligned_cols=210  Identities=26%  Similarity=0.440  Sum_probs=174.8

Q ss_pred             CCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccC
Q psy8551         310 NLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA  389 (581)
Q Consensus       310 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  389 (581)
                      ..+.++++++.++.+|..+.  +.++.|++++|.+.                                            
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~--------------------------------------------   48 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLA--------------------------------------------   48 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCC--------------------------------------------
T ss_pred             CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcC--------------------------------------------
Confidence            46678888888888877654  57888888887654                                            


Q ss_pred             CCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEe
Q psy8551         390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRV  469 (581)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~  469 (581)
                           .+....|.++++|++|++++|.+++.++..+..+++|++|++++|.++..++..+..+++|++|++++ +.++.+
T Consensus        49 -----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~  122 (251)
T 3m19_A           49 -----TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGG-NQLKSL  122 (251)
T ss_dssp             -----CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCC
T ss_pred             -----ccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCC-CcCCCc
Confidence                 23344567788999999999999988888889999999999999999988888889999999999998 578888


Q ss_pred             cCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCccccc-CchhHH
Q psy8551         470 RKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECG-CNILWL  547 (581)
Q Consensus       470 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~-c~~~~~  547 (581)
                      .+..|..+++|++|++++| .++.+++..+..+++|++|++++|.++.++. .+..+++|++|++++||+.|+ |++.|+
T Consensus       123 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~l  201 (251)
T 3m19_A          123 PSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYL  201 (251)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTTHHHH
T ss_pred             ChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccccHHH
Confidence            8888899999999999999 8888888889999999999999999998875 577899999999999999999 999999


Q ss_pred             HHHHhhc--------------CCCceeeCCCcccccccc
Q psy8551         548 REMLVRR--------------NTSAVFCNSPAPLKYKSL  572 (581)
Q Consensus       548 ~~~~~~~--------------~~~~~~c~~~~~~~~~~~  572 (581)
                      .+|++..              .+..+.|..+..+++.+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~  240 (251)
T 3m19_A          202 SQWIRENSNKVKDGTGQNLHESPDGVTCSDGKVVRTVTN  240 (251)
T ss_dssp             HHHHHHSGGGBCC-------CCGGGCBBTTSCBGGGCCT
T ss_pred             HHHHHhcccceeeccCcccccCCCcCccCCCcEEeeech
Confidence            9999764              233456776654444433

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.9e-24  Score=210.23  Aligned_cols=248  Identities=19%  Similarity=0.267  Sum_probs=176.2

Q ss_pred             CcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCC
Q psy8551         213 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN  292 (581)
Q Consensus       213 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~  292 (581)
                      ++..+++.+.+...+...+..+++|++|++++|.++...+..+..++                         +|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-------------------------~L~~L~Ls   66 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFT-------------------------KLELLNLS   66 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCT-------------------------TCCEEECT
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCC-------------------------cCCEEECC
Confidence            34445555555544444455566677777777766655544454444                         45555555


Q ss_pred             CCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCc
Q psy8551         293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAP  372 (581)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  372 (581)
                      +| .+...++  +..+++|+.|++++|.++.++.    .++|++|++++|.+..                          
T Consensus        67 ~n-~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~--------------------------  113 (317)
T 3o53_A           67 SN-VLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISR--------------------------  113 (317)
T ss_dssp             TS-CCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSE--------------------------
T ss_pred             CC-cCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECCCCccCC--------------------------
Confidence            55 3333332  5666777777777777665553    2677777777776531                          


Q ss_pred             ccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccc-cC
Q psy8551         373 LKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF-KG  451 (581)
Q Consensus       373 ~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~-~~  451 (581)
                                             +   ....+++|++|++++|.+++.++..+..+++|++|++++|.++...+..+ ..
T Consensus       114 -----------------------~---~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  167 (317)
T 3o53_A          114 -----------------------V---SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAAS  167 (317)
T ss_dssp             -----------------------E---EECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGG
T ss_pred             -----------------------c---CccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhc
Confidence                                   0   11125678888888888888777777888888888888888888766655 46


Q ss_pred             CccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEE
Q psy8551         452 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI  531 (581)
Q Consensus       452 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L  531 (581)
                      +++|++|++++| .++.+..  ...+++|++|++++| .+..+++. +..+++|++|++++|.++.+|..+..+++|+.|
T Consensus       168 l~~L~~L~L~~N-~l~~~~~--~~~l~~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L  242 (317)
T 3o53_A          168 SDTLEHLNLQYN-FIYDVKG--QVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF  242 (317)
T ss_dssp             TTTCCEEECTTS-CCCEEEC--CCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEE
T ss_pred             cCcCCEEECCCC-cCccccc--ccccccCCEEECCCC-cCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEE
Confidence            788888888884 5655533  234889999999999 78888655 888999999999999999999999899999999


Q ss_pred             ecCCCcccccCchhHHHH
Q psy8551         532 DIAENPIECGCNILWLRE  549 (581)
Q Consensus       532 ~l~~np~~c~c~~~~~~~  549 (581)
                      ++++|++.|++...|+..
T Consensus       243 ~l~~N~~~~~~~~~~~~~  260 (317)
T 3o53_A          243 DLRGNGFHCGTLRDFFSK  260 (317)
T ss_dssp             ECTTCCCBHHHHHHHHHT
T ss_pred             EccCCCccCcCHHHHHhc
Confidence            999999999887766653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=4e-27  Score=250.58  Aligned_cols=393  Identities=12%  Similarity=0.073  Sum_probs=256.8

Q ss_pred             CCCcccEEEcCCCceeecCCCCCCC-CCc-ccEEeCCCCCCCCcccccccCCcccccccCccccccc-chhhcCCCCCCc
Q psy8551          66 IYLSLQHVDLSHTTWLIIPIGGFEP-QEK-LVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRI-DQACFEGLTALR  142 (581)
Q Consensus        66 ~~~~L~~L~ls~~~l~~~~~~~~~~-l~~-L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~-~~~~l~~~~~L~  142 (581)
                      .+++|++|+|++|.++......+.. +++ |++|++++|..                      ++.. .......+++|+
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----------------------~~~~~l~~~~~~~~~L~  167 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----------------------FTTDGLLSIVTHCRKIK  167 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----------------------EEHHHHHHHHHHCTTCS
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----------------------cCHHHHHHHHhhCCCCC
Confidence            5677777777777655332222332 233 77777776641                      1111 111234689999


Q ss_pred             EEeCCCCcCcccCCc----ccccCccCcEEECCCCcceecc----CCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551         143 ILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR  214 (581)
Q Consensus       143 ~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~  214 (581)
                      +|++++|.+++....    .+..+++|++|++++|.++++.    +..+.++++|+.|++++|.+..+. ..+..+++|+
T Consensus       168 ~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~-~~~~~~~~L~  246 (592)
T 3ogk_B          168 TLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELV-GFFKAAANLE  246 (592)
T ss_dssp             EEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGH-HHHHHCTTCC
T ss_pred             EEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHH-HHHhhhhHHH
Confidence            999999987665432    3456889999999999886322    223457899999999999887754 4677889999


Q ss_pred             EEECCCCcCC---ccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecC-ccCCCCCCCCEEe
Q psy8551         215 SLVLTDNRLQ---SIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRK-GAFADNLNLETLT  290 (581)
Q Consensus       215 ~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~  290 (581)
                      +|+++.....   ......+..+++|+.++++++....+ +..+..+++|+.|++++|. +..... ..+..+++|++|+
T Consensus       247 ~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM-PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             EEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTG-GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEE
T ss_pred             hhcccccccccchHHHHHHhhccccccccCccccchhHH-HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEe
Confidence            9999753222   11224567788999999987643333 3346678899999999876 433322 3357789999999


Q ss_pred             CCCCCCcccc-ccccccCCCCCcEEecCC-----------CCCc--cccccccCCCCcceEEccCCCCccCCchhhHHHH
Q psy8551         291 LNKNPKLKTI-EEGALVGLPNLYHLNLKE-----------NAFT--SFSESMLAWPELRTIDIAENPIECGCNILWLREM  356 (581)
Q Consensus       291 l~~~~~~~~~-~~~~~~~~~~L~~L~l~~-----------~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  356 (581)
                      +.++  +.+. .......+++|++|++.+           +.++  .+......+++|++|++..+.+....        
T Consensus       325 L~~~--~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~--------  394 (592)
T 3ogk_B          325 TRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES--------  394 (592)
T ss_dssp             EEGG--GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHH--------
T ss_pred             ccCc--cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHH--------
Confidence            9844  3322 222345788999999993           4555  23333446899999999776654210        


Q ss_pred             HhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcccc-CCCCCCCEEEcC----CCcCCccCh-----hhhc
Q psy8551         357 LVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF-RGLSGLRSLVLT----DNRLQSIPT-----KQLS  426 (581)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~-~~~~~L~~L~l~----~n~l~~~~~-----~~l~  426 (581)
                                                               ...+ ..+++|+.|+++    .+.+++.+.     ..+.
T Consensus       395 -----------------------------------------~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~  433 (592)
T 3ogk_B          395 -----------------------------------------LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI  433 (592)
T ss_dssp             -----------------------------------------HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH
T ss_pred             -----------------------------------------HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHH
Confidence                                                     0111 126789999996    556766432     2356


Q ss_pred             CCCCCcEeecCCCc--ceeeccccc-cCCccccEEeecCCCCeeEe-cCCccCCCCCCCeeeCCCCCCceee-cCCccCC
Q psy8551         427 KLTRLEELEIGQNG--FSMLEAGCF-KGLSYLKRLEITGASNLTRV-RKGAFADNLNLETLTLNKNPKLKII-EEDALVG  501 (581)
Q Consensus       427 ~l~~L~~L~l~~~~--i~~~~~~~~-~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~  501 (581)
                      .+++|++|++++|.  +++.....+ ..+++|++|++++|. +++. .+..+..+++|++|++++|+ ++.. .+..+..
T Consensus       434 ~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~  511 (592)
T 3ogk_B          434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTK  511 (592)
T ss_dssp             HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHH
T ss_pred             hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHh
Confidence            78999999997643  554433333 358889999999764 4432 22345678999999999995 4432 2233457


Q ss_pred             CCCccEEEcCCCcceee--ccccccCCcceEEecCCC
Q psy8551         502 LPNLYHLNLKENAFTSF--SESMLAWPELRTIDIAEN  536 (581)
Q Consensus       502 l~~L~~L~l~~n~l~~l--~~~~~~~~~L~~L~l~~n  536 (581)
                      +++|++|++++|+++..  ......+|.++...+..+
T Consensus       512 l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          512 LPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             CSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             cCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            89999999999998842  223345777777666654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.91  E-value=6.4e-23  Score=215.16  Aligned_cols=268  Identities=21%  Similarity=0.234  Sum_probs=195.9

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .++++|+++++.++.+|..+.  ++|++|++++|.++.++.    .+++|++|++++|.+                    
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l--------------------   93 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQL--------------------   93 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCC--------------------
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcC--------------------
Confidence            468999999999999998665  899999999999998885    468899999999863                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.++.    .+++|++|++++|.++.++.    .+++|++|++++|.++.++.    .+++|++|++++|.++.++.
T Consensus        94 ---~~lp~----~l~~L~~L~Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~  158 (622)
T 3g06_A           94 ---TSLPV----LPPGLLELSIFSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA  158 (622)
T ss_dssp             ---SCCCC----CCTTCCEEEECSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             ---CcCCC----CCCCCCEEECcCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC
Confidence               33332    56889999999999888775    46788999999998887664    24788888888888876543


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  284 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (581)
                          ...+|+.|++++|.++.++    ..+++|+.|++++|.++.++..    .+                         
T Consensus       159 ----~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~----~~-------------------------  201 (622)
T 3g06_A          159 ----LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL----PS-------------------------  201 (622)
T ss_dssp             ----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC----CT-------------------------
T ss_pred             ----ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc----cc-------------------------
Confidence                3467888888888888876    3357788888888877654321    13                         


Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA  364 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~  364 (581)
                      +|+.|++++| .+..++.    .+++|+.|++++|.++.+|   ..+++|++|++++|.+..                  
T Consensus       202 ~L~~L~L~~N-~l~~l~~----~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~------------------  255 (622)
T 3g06_A          202 ELYKLWAYNN-RLTSLPA----LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTS------------------  255 (622)
T ss_dssp             TCCEEECCSS-CCSSCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC------------------
T ss_pred             hhhEEECcCC-cccccCC----CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCc------------------
Confidence            4555555555 3444443    2367777888888777766   344677888888776531                  


Q ss_pred             eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551         365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  444 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  444 (581)
                                                     ++.    .+++|+.|++++|.++.++ ..+..+++|+.|++++|.+++.
T Consensus       256 -------------------------------lp~----~~~~L~~L~Ls~N~L~~lp-~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          256 -------------------------------LPM----LPSGLLSLSVYRNQLTRLP-ESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             -------------------------------CCC----CCTTCCEEECCSSCCCSCC-GGGGGSCTTCEEECCSCCCCHH
T ss_pred             -------------------------------CCc----ccccCcEEeCCCCCCCcCC-HHHhhccccCEEEecCCCCCCc
Confidence                                           111    2567888888888888765 4678888888888888888876


Q ss_pred             ccccccCC
Q psy8551         445 EAGCFKGL  452 (581)
Q Consensus       445 ~~~~~~~~  452 (581)
                      .+..+..+
T Consensus       300 ~~~~l~~L  307 (622)
T 3g06_A          300 TLQALREI  307 (622)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHhc
Confidence            66554433

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.90  E-value=1.8e-23  Score=206.29  Aligned_cols=247  Identities=21%  Similarity=0.301  Sum_probs=196.0

Q ss_pred             CCCC-CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCce-eecCCCCCC
Q psy8551          13 CMNP-YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTW-LIIPIGGFE   89 (581)
Q Consensus        13 ~~~~-c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l-~~~~~~~~~   89 (581)
                      ||.. |+|..   +++.|  ++.++++||..+++++++|+|++|+|+.+|. .|.++++|++|+|++|++ +.++..+|.
T Consensus         2 Cp~~~C~C~~---~~v~C--~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~   76 (350)
T 4ay9_X            2 CHHRICHCSN---RVFLC--QESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   76 (350)
T ss_dssp             CCCSSSEEET---TEEEE--ESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBC
T ss_pred             CCCCccEeeC---CEEEe--cCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhh
Confidence            7765 99976   67999  9999999999999999999999999999986 689999999999999986 567888899


Q ss_pred             CCCcccEE-eCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551          90 PQEKLVEL-QLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL  168 (581)
Q Consensus        90 ~l~~L~~L-~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  168 (581)
                      ++++++++ .+++|                       +++.+.+..|..+++|++|++++|++..++...+....++..+
T Consensus        77 ~L~~l~~~l~~~~N-----------------------~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l  133 (350)
T 4ay9_X           77 NLPKLHEIRIEKAN-----------------------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL  133 (350)
T ss_dssp             SCTTCCEEEEEEET-----------------------TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE
T ss_pred             cchhhhhhhcccCC-----------------------cccccCchhhhhccccccccccccccccCCchhhcccchhhhh
Confidence            99887764 44444                       3677778889999999999999999999888777777788888


Q ss_pred             ECCC-CcceeccCCcCCCCC-CCcEEEcCCCCccccCccccCCCCCCcEEECC-CCcCCccCccccCCCCCCCEEECCCC
Q psy8551         169 RVGL-NVFTTLADGAFNGLG-RLSALDLRGAGLTNISDNAFRGLSGLRSLVLT-DNRLQSIPTKQLSKLTRLEELEIGQN  245 (581)
Q Consensus       169 ~L~~-n~~~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~~  245 (581)
                      ++.+ +.+..++...|..+. .++.|++++|+++.+.+..+. ..+|+.+++. +|.++.++..+|..+++|++|++++|
T Consensus       134 ~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT  212 (350)
T ss_dssp             EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred             hhccccccccccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence            8855 678888877777764 688999999999988776554 4678999987 47888998888899999999999999


Q ss_pred             cccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCC
Q psy8551         246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  293 (581)
Q Consensus       246 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  293 (581)
                      .++.++...+.+   |+.|.+.++..++.++.  +..+++|+.+++.+
T Consensus       213 ~l~~lp~~~~~~---L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          213 RIHSLPSYGLEN---LKKLRARSTYNLKKLPT--LEKLVALMEASLTY  255 (350)
T ss_dssp             CCCCCCSSSCTT---CCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred             CcCccChhhhcc---chHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence            998887765544   44444444444444442  44455555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.90  E-value=4.9e-23  Score=188.56  Aligned_cols=190  Identities=25%  Similarity=0.472  Sum_probs=165.7

Q ss_pred             cccCCCCccccCccccCCCCCCCEEEcCCCcCCccCh-hhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCC
Q psy8551         386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS  464 (581)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  464 (581)
                      +.+....+..++...   .+.+++|++++|.++.+++ ..+..+++|++|++++|.++...+..|..+++|++|++++ +
T Consensus        16 l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~-N   91 (220)
T 2v70_A           16 VDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS-N   91 (220)
T ss_dssp             EECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-S
T ss_pred             eEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC-C
Confidence            344455555665433   3567999999999998853 5688999999999999999999998999999999999998 5


Q ss_pred             CeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcccccCc
Q psy8551         465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       465 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~  543 (581)
                      .++.+.+..|.++++|++|++++| .+..+++..+.++++|++|++++|.++.+ |..+..+++|++|++++|||.|+|+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            788888888999999999999999 78888788899999999999999999987 6778889999999999999999999


Q ss_pred             hhHHHHHHhhcC--CCceeeCCCcccccccccccCcccc
Q psy8551         544 ILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       544 ~~~~~~~~~~~~--~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      +.|+.+|.....  .....|..|..++|+++.+++.+++
T Consensus       171 l~~l~~~~~~~~~~~~~~~C~~P~~l~g~~l~~l~~~~~  209 (220)
T 2v70_A          171 LAWLGEWLRKKRIVTGNPRCQKPYFLKEIPIQDVAIQDF  209 (220)
T ss_dssp             GHHHHHHHHHSCCBCCCCEEEESGGGTTEEGGGSCGGGC
T ss_pred             hHHHHHHHHhcCccccCCccCCChHHCCCChhhCCHHHc
Confidence            999999998643  3445899999999999999998875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=1.5e-23  Score=203.94  Aligned_cols=244  Identities=19%  Similarity=0.188  Sum_probs=150.6

Q ss_pred             ccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          47 IQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        47 l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      ++..+++.+.+...+. .+..+++|++|++++|.++.+++..|..+++|++|++++|.+                     
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---------------------   70 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL---------------------   70 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCC---------------------
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcC---------------------
Confidence            4444555555554432 344566777777777777776655677777777777777653                     


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN  205 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  205 (581)
                        ++..+  +..+++|++|++++|.++.++.     .++|++|++++|.+++++..   .+++|+.|++++|.++.+.+.
T Consensus        71 --~~~~~--~~~l~~L~~L~Ls~n~l~~l~~-----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~  138 (317)
T 3o53_A           71 --YETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL  138 (317)
T ss_dssp             --EEEEE--ETTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred             --Ccchh--hhhcCCCCEEECcCCccccccC-----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence              22222  5666777777777776665442     36677777777766665543   245666666766666666555


Q ss_pred             ccCCCCCCcEEECCCCcCCccCcccc-CCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551         206 AFRGLSGLRSLVLTDNRLQSIPTKQL-SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  284 (581)
Q Consensus       206 ~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (581)
                      .+..+++|++|++++|.++.+++..+ ..+++|++|++++|.++..+..                           ..++
T Consensus       139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---------------------------~~l~  191 (317)
T 3o53_A          139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ---------------------------VVFA  191 (317)
T ss_dssp             CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC---------------------------CCCT
T ss_pred             hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc---------------------------cccc
Confidence            56666666666666666665544433 3456666666666665544221                           1245


Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhh
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW  352 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  352 (581)
                      +|++|++++| .+..++.. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++.|.....|
T Consensus       192 ~L~~L~Ls~N-~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~  257 (317)
T 3o53_A          192 KLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF  257 (317)
T ss_dssp             TCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred             cCCEEECCCC-cCCcchhh-hcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence            5666666666 45555553 666677777777777777777666667777777777777765544444

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=3.3e-22  Score=191.31  Aligned_cols=218  Identities=28%  Similarity=0.379  Sum_probs=194.8

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR  214 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~  214 (581)
                      +.++++++.+++++++++.+|...   .+++++|++++|.++.+.+..+..+++|+.|++++|.++.+..  ...+++|+
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~   80 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLG   80 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCC
T ss_pred             ccccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCC
Confidence            567889999999999999888633   3689999999999998888889999999999999999988765  36789999


Q ss_pred             EEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCC
Q psy8551         215 SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN  294 (581)
Q Consensus       215 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (581)
                      +|++++|+++.++ ..+..+++|++|++++|.++.+++..|..+++|+.|++++| .+..+++..|..+++|+.|++++|
T Consensus        81 ~L~Ls~N~l~~l~-~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           81 TLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             EEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             EEECCCCcCCcCc-hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCC
Confidence            9999999999888 46788999999999999999998888999999999999986 677788888889999999999999


Q ss_pred             CCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhc
Q psy8551         295 PKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR  360 (581)
Q Consensus       295 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~  360 (581)
                       .++.++...+..+++|+.|++++|.++.+|..+...+.|+.+++.+|++.|.|...|+..+....
T Consensus       159 -~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~~~~l~~wl~~~  223 (290)
T 1p9a_G          159 -NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (290)
T ss_dssp             -CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             -cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCccHHHHHHHHhC
Confidence             78889888889999999999999999999999999999999999999999999998888776543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=4.8e-23  Score=193.24  Aligned_cols=186  Identities=27%  Similarity=0.447  Sum_probs=128.3

Q ss_pred             cCCCC--CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCC
Q psy8551          12 KCMNP--YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF   88 (581)
Q Consensus        12 ~~~~~--c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~   88 (581)
                      +||.+  |+|.. ..+.+.|  ++..++.+|..+++++++|+|++|.+..++. .+.++++|++|++++|.++.++...|
T Consensus         3 ~Cp~~~gC~C~~-~~~~l~~--~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~   79 (251)
T 3m19_A            3 TCETVTGCTCNE-GKKEVDC--QGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVF   79 (251)
T ss_dssp             -CHHHHSSEEEG-GGTEEEC--TTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred             cCCCCCceEcCC-CCeEEec--CCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHh
Confidence            57877  88854 4567889  9999999999999999999999999988765 68889999999999998888887778


Q ss_pred             CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551          89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL  168 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  168 (581)
                      ..+++|++|++++|.                       ++.+++..|..+++|++|++++|.++.++...+..+++|++|
T Consensus        80 ~~l~~L~~L~L~~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           80 DDLTELGTLGLANNQ-----------------------LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             TTCTTCCEEECTTSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCcCCEEECCCCc-----------------------ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEE
Confidence            888888888888775                       334444556666777777777777666665555556666666


Q ss_pred             ECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcC
Q psy8551         169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRL  223 (581)
Q Consensus       169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l  223 (581)
                      ++++|.++.+++..+..+++|+.|++++|.++.+.+..+..+++|+.|++++|.+
T Consensus       137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            6666665555554455555555555555555544444444444444444444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=1e-23  Score=205.81  Aligned_cols=241  Identities=17%  Similarity=0.162  Sum_probs=190.6

Q ss_pred             CCccccccCCCccCCCC----CCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCC
Q psy8551          26 DPSCNLQEANLDVIPSH----SNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNH  101 (581)
Q Consensus        26 ~~~c~~~~~~l~~ip~~----~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~  101 (581)
                      ...|.|.+..+..++..    ..+++++|+|+++.++.+|..+..+++|++|++++|.++.++ ..+..+++|++|++++
T Consensus        58 ~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp-~~~~~l~~L~~L~Ls~  136 (328)
T 4fcg_A           58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELP-DTMQQFAGLETLTLAR  136 (328)
T ss_dssp             TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCC-SCGGGGTTCSEEEEES
T ss_pred             ccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchh-HHHhccCCCCEEECCC
Confidence            34555555555443332    236899999999999999999999999999999999999776 5789999999999999


Q ss_pred             CCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCccc---------ccCccCcEEECCC
Q psy8551         102 NKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF---------IYLGMLAELRVGL  172 (581)
Q Consensus       102 n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~---------~~~~~L~~L~L~~  172 (581)
                      |.+                       +.+ +..++++++|++|++++|++....+..+         ..+++|++|++++
T Consensus       137 n~l-----------------------~~l-p~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~  192 (328)
T 4fcg_A          137 NPL-----------------------RAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW  192 (328)
T ss_dssp             CCC-----------------------CCC-CGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE
T ss_pred             Ccc-----------------------ccC-cHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC
Confidence            864                       223 3347788899999998865554333333         3488999999999


Q ss_pred             CcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCC
Q psy8551         173 NVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA  252 (581)
Q Consensus       173 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  252 (581)
                      |.++.++. .+.++++|+.|++++|.++.+++ .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+
T Consensus       193 n~l~~lp~-~l~~l~~L~~L~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          193 TGIRSLPA-SIANLQNLKSLKIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             ECCCCCCG-GGGGCTTCCEEEEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             CCcCcchH-hhcCCCCCCEEEccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence            98886554 58888999999999998887665 57888999999999988877666778889999999999988877777


Q ss_pred             cccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCC
Q psy8551         253 GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN  294 (581)
Q Consensus       253 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  294 (581)
                      ..+..+++|+.|++++|...+.++. .+..+++++.+++..+
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~-~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPS-LIAQLPANCIILVPPH  311 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCG-GGGGSCTTCEEECCGG
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccH-HHhhccCceEEeCCHH
Confidence            7788889999999998876665554 5778888998888765

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=5.3e-24  Score=206.67  Aligned_cols=244  Identities=17%  Similarity=0.140  Sum_probs=171.6

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCC-CC-------CCCcccEEeCCCCCCCCcccccccCCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG-FE-------PQEKLVELQLNHNKHFPQQIVCSIISP  116 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~-~~-------~l~~L~~L~l~~n~~~~~~~~~~~~~~  116 (581)
                      ++++++++++|.+ .+|..+...  |++|++++|.++...... +.       ++++|++|++++|.+            
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l------------  107 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEV------------  107 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBC------------
T ss_pred             CCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcc------------
Confidence            5788889999988 777655544  888899998886533211 22       577888888888753            


Q ss_pred             ccccccCcccccccchhhc--CCCCCCcEEeCCCCcCcccCCcccccC-----ccCcEEECCCCcceeccCCcCCCCCCC
Q psy8551         117 RRVEIFGQNRISRIDQACF--EGLTALRILYLDDNQLRSVPTPSFIYL-----GMLAELRVGLNVFTTLADGAFNGLGRL  189 (581)
Q Consensus       117 ~~L~~l~~~~l~~~~~~~l--~~~~~L~~L~l~~~~i~~~~~~~~~~~-----~~L~~L~L~~n~~~~~~~~~l~~l~~L  189 (581)
                                 ++..+..+  +.+++|++|++++|.+++.+ ..+..+     ++|++|++++|.+.++++..+..+++|
T Consensus       108 -----------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L  175 (312)
T 1wwl_A          108 -----------TGTAPPPLLEATGPDLNILNLRNVSWATRD-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL  175 (312)
T ss_dssp             -----------BSCCCCCSSSCCSCCCSEEEEESCBCSSSS-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred             -----------cchhHHHHHHhcCCCccEEEccCCCCcchh-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence                       32223323  77888899999988888874 466655     788888888888888887778888888


Q ss_pred             cEEEcCCCCccccC--cccc--CCCCCCcEEECCCCcCCc---cCccccCCCCCCCEEECCCCcccccCC-cccCCCccc
Q psy8551         190 SALDLRGAGLTNIS--DNAF--RGLSGLRSLVLTDNRLQS---IPTKQLSKLTRLEELEIGQNGFSMLEA-GCFKGLSYL  261 (581)
Q Consensus       190 ~~L~L~~~~l~~~~--~~~l--~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L  261 (581)
                      +.|++++|++.+..  +..+  ..+++|++|++++|+++.   ++...+..+++|++|++++|.+....+ ..+.     
T Consensus       176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----  250 (312)
T 1wwl_A          176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD-----  250 (312)
T ss_dssp             CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC-----
T ss_pred             CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh-----
Confidence            88888888765421  1122  677888888888888873   333444567788888888887765442 2222     


Q ss_pred             ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccC
Q psy8551         262 KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE  341 (581)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  341 (581)
                                          .+++|++|++++| .++.++... .  ++|+.|++++|.++.+|. +..+++|++|++++
T Consensus       251 --------------------~l~~L~~L~Ls~N-~l~~ip~~~-~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~  305 (312)
T 1wwl_A          251 --------------------WPSQLNSLNLSFT-GLKQVPKGL-P--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKG  305 (312)
T ss_dssp             --------------------CCTTCCEEECTTS-CCSSCCSSC-C--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTT
T ss_pred             --------------------hcCCCCEEECCCC-ccChhhhhc-c--CCceEEECCCCCCCCChh-HhhCCCCCEEeccC
Confidence                                2346666666666 455665532 2  788888888888887765 77788888888888


Q ss_pred             CCCc
Q psy8551         342 NPIE  345 (581)
Q Consensus       342 ~~~~  345 (581)
                      |++.
T Consensus       306 N~l~  309 (312)
T 1wwl_A          306 NPFL  309 (312)
T ss_dssp             CTTT
T ss_pred             CCCC
Confidence            8775

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.89  E-value=1.5e-22  Score=208.21  Aligned_cols=226  Identities=20%  Similarity=0.282  Sum_probs=156.2

Q ss_pred             CCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcE
Q psy8551         234 LTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH  313 (581)
Q Consensus       234 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~  313 (581)
                      +++|++|++++|.+...++..+..+++|+.|+                         +++| .+...++  +..+++|+.
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-------------------------Ls~N-~l~~~~~--l~~l~~L~~   84 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLN-------------------------LSSN-VLYETLD--LESLSTLRT   84 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEE-------------------------CTTS-CCEEEEE--CTTCTTCCE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEE-------------------------eeCC-CCCCCcc--cccCCCCCE
Confidence            34677777777766665555555555555554                         4444 2333332  556666666


Q ss_pred             EecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCc
Q psy8551         314 LNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGL  393 (581)
Q Consensus       314 L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  393 (581)
                      |++++|.++.++..    ++|++|++++|.+..                                               
T Consensus        85 L~Ls~N~l~~l~~~----~~L~~L~L~~N~l~~-----------------------------------------------  113 (487)
T 3oja_A           85 LDLNNNYVQELLVG----PSIETLHAANNNISR-----------------------------------------------  113 (487)
T ss_dssp             EECCSSEEEEEEEC----TTCCEEECCSSCCCC-----------------------------------------------
T ss_pred             EEecCCcCCCCCCC----CCcCEEECcCCcCCC-----------------------------------------------
Confidence            66666666655432    667777777765531                                               


Q ss_pred             cccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeecccccc-CCccccEEeecCCCCeeEecCC
Q psy8551         394 TNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK-GLSYLKRLEITGASNLTRVRKG  472 (581)
Q Consensus       394 ~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~  472 (581)
                        +.   ...+++|+.|++++|.+++.++..+..+++|++|++++|.+++..+..+. .+++|++|++++| .++.+.. 
T Consensus       114 --~~---~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~-  186 (487)
T 3oja_A          114 --VS---CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKG-  186 (487)
T ss_dssp             --EE---ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEEC-
T ss_pred             --CC---ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCC-ccccccc-
Confidence              00   11246678888888888777766777788888888888888877666664 6788888888874 4555533 


Q ss_pred             ccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCchhHHH
Q psy8551         473 AFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLR  548 (581)
Q Consensus       473 ~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~  548 (581)
                       ...+++|++|++++| .+..+++. +..+++|+.|++++|.++.+|..+..+++|+.|++++|++.|++...|+.
T Consensus       187 -~~~l~~L~~L~Ls~N-~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~  259 (487)
T 3oja_A          187 -QVVFAKLKTLDLSSN-KLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS  259 (487)
T ss_dssp             -CCCCTTCCEEECCSS-CCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred             -cccCCCCCEEECCCC-CCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence             335788888999888 67777654 77888999999999999988888888889999999999998877655544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1e-22  Score=209.52  Aligned_cols=149  Identities=21%  Similarity=0.189  Sum_probs=71.6

Q ss_pred             cccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCC
Q psy8551          69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD  148 (581)
Q Consensus        69 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~  148 (581)
                      +|++|+|++|.++.+++..|..+++|++|++++|.+                       ++..+  ++.+++|++|++++
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l-----------------------~~~~~--l~~l~~L~~L~Ls~   89 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL-----------------------YETLD--LESLSTLRTLDLNN   89 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCC-----------------------EEEEE--CTTCTTCCEEECCS
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCC-----------------------CCCcc--cccCCCCCEEEecC
Confidence            555555555555555444455555555555555432                       11111  44445555555555


Q ss_pred             CcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc
Q psy8551         149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT  228 (581)
Q Consensus       149 ~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  228 (581)
                      |.++.++.     .++|++|++++|.+++++..   .+++|+.|++++|.++...+..+..+++|+.|++++|.++++++
T Consensus        90 N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~  161 (487)
T 3oja_A           90 NYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF  161 (487)
T ss_dssp             SEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred             CcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcCh
Confidence            55444332     24455555555555444332   23445555555555554444444445555555555555554333


Q ss_pred             cccC-CCCCCCEEECCCCccccc
Q psy8551         229 KQLS-KLTRLEELEIGQNGFSML  250 (581)
Q Consensus       229 ~~~~-~l~~L~~L~l~~~~~~~~  250 (581)
                      ..+. .+++|++|++++|.++..
T Consensus       162 ~~l~~~l~~L~~L~Ls~N~l~~~  184 (487)
T 3oja_A          162 AELAASSDTLEHLNLQYNFIYDV  184 (487)
T ss_dssp             GGGGGGTTTCCEEECTTSCCCEE
T ss_pred             HHHhhhCCcccEEecCCCccccc
Confidence            3332 445555555555554433

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.88  E-value=4.3e-25  Score=235.05  Aligned_cols=417  Identities=14%  Similarity=0.153  Sum_probs=235.9

Q ss_pred             EEEcccCCcccccccccCCCcccEEEcCCCc-eeecCC--------------CCCCCCCcccEEeCCCCCCCCccccccc
Q psy8551          49 RLVLSTNRIKTVDSAIPIYLSLQHVDLSHTT-WLIIPI--------------GGFEPQEKLVELQLNHNKHFPQQIVCSI  113 (581)
Q Consensus        49 ~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~-l~~~~~--------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~  113 (581)
                      .+++.+.........+..+++|++|+++++. +..+..              .....+++|++|++++|.+         
T Consensus        47 ~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~---------  117 (594)
T 2p1m_B           47 KVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVV---------  117 (594)
T ss_dssp             EEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBC---------
T ss_pred             EEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEE---------
Confidence            4444443332222345566777777777653 221110              0123456777777777642         


Q ss_pred             CCcccccccCcccccccchhhcC-CCCCCcEEeCCCC-cCcccC-CcccccCccCcEEECCCCcceeccCC----cCCCC
Q psy8551         114 ISPRRVEIFGQNRISRIDQACFE-GLTALRILYLDDN-QLRSVP-TPSFIYLGMLAELRVGLNVFTTLADG----AFNGL  186 (581)
Q Consensus       114 ~~~~~L~~l~~~~l~~~~~~~l~-~~~~L~~L~l~~~-~i~~~~-~~~~~~~~~L~~L~L~~n~~~~~~~~----~l~~l  186 (581)
                                    ++.....+. .+++|++|++++| .++... ...+..+++|++|++++|.+++....    ....+
T Consensus       118 --------------~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          118 --------------TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             --------------CHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             --------------cHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence                          222222232 4677777777776 444311 11234577777777777776543322    22356


Q ss_pred             CCCcEEEcCCCCccccCccc----cCCCCCCcEEECCCC-cCCccCccccCCCCCCCEEECCCCc-------ccccCCcc
Q psy8551         187 GRLSALDLRGAGLTNISDNA----FRGLSGLRSLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNG-------FSMLEAGC  254 (581)
Q Consensus       187 ~~L~~L~L~~~~l~~~~~~~----l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~  254 (581)
                      ++|+.|+++++. ..+....    +..+++|++|++.+| .+..++ ..+..+++|++|+++.+.       +..+.. .
T Consensus       184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~  260 (594)
T 2p1m_B          184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLA-TLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-A  260 (594)
T ss_dssp             CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHH-HHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-H
T ss_pred             CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHH-HHHhcCCcceEcccccccCccchhhHHHHHH-H
Confidence            778888887775 2222221    234578888888877 333433 456667788888765442       222222 3


Q ss_pred             cCCCccccee-eecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc-cccccCCCCCcEEecCCCCCc--cccccccC
Q psy8551         255 FKGLSYLKRL-EITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE-EGALVGLPNLYHLNLKENAFT--SFSESMLA  330 (581)
Q Consensus       255 ~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~  330 (581)
                      +.++++|+.+ .+.+.. ... ....+..+++|++|++++|. ++... ...+..+++|++|++.+| +.  .++.....
T Consensus       261 l~~~~~L~~Ls~~~~~~-~~~-l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~  336 (594)
T 2p1m_B          261 LSGCKELRCLSGFWDAV-PAY-LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAST  336 (594)
T ss_dssp             HHTCTTCCEEECCBTCC-GGG-GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHH
T ss_pred             HhcCCCcccccCCcccc-hhh-HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHh
Confidence            5566777776 332211 011 11112245788888888885 44322 223567888888888887 43  22223334


Q ss_pred             CCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcc-ccCCCCCCCE
Q psy8551         331 WPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN-AFRGLSGLRS  409 (581)
Q Consensus       331 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~-~~~~~~~L~~  409 (581)
                      +++|++|++.++...+..                                        ....+...... ...++++|++
T Consensus       337 ~~~L~~L~L~~~~~~g~~----------------------------------------~~~~l~~~~l~~l~~~~~~L~~  376 (594)
T 2p1m_B          337 CKDLRELRVFPSEPFVME----------------------------------------PNVALTEQGLVSVSMGCPKLES  376 (594)
T ss_dssp             CTTCCEEEEECSCTTCSS----------------------------------------CSSCCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCCEEEEecCcccccc----------------------------------------cCCCCCHHHHHHHHHhchhHHH
Confidence            788888888553210000                                        00000000001 1123688888


Q ss_pred             EEcCCCcCCccChhhhc-CCCCCcEeecC--C----Ccceeec-----cccccCCccccEEeecCCCCeeEecCCccCC-
Q psy8551         410 LVLTDNRLQSIPTKQLS-KLTRLEELEIG--Q----NGFSMLE-----AGCFKGLSYLKRLEITGASNLTRVRKGAFAD-  476 (581)
Q Consensus       410 L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----~~i~~~~-----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-  476 (581)
                      |.+..+.++......+. .+++|++|+++  +    +.++..+     ...+..+++|++|++++  .+++.....+.. 
T Consensus       377 L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~  454 (594)
T 2p1m_B          377 VLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTY  454 (594)
T ss_dssp             EEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHH
T ss_pred             HHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHh
Confidence            88888888765544454 58889999988  3    4555321     12246778899999965  444443333443 


Q ss_pred             CCCCCeeeCCCCCCceeecCCcc-CCCCCccEEEcCCCccee--eccccccCCcceEEecCCCcc
Q psy8551         477 NLNLETLTLNKNPKLKIIEEDAL-VGLPNLYHLNLKENAFTS--FSESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       477 ~~~L~~L~l~~~~~l~~~~~~~~-~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~l~~np~  538 (581)
                      +++|++|++++|. ++......+ .++++|++|++++|.++.  +...+..+++|++|++++|++
T Consensus       455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            7889999999984 433322223 568999999999999863  233445688999999999988

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.88  E-value=5e-22  Score=177.61  Aligned_cols=168  Identities=21%  Similarity=0.422  Sum_probs=142.6

Q ss_pred             CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551         408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  487 (581)
Q Consensus       408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~  487 (581)
                      +.++++++.++.++.. +  .++|++|++++|.++.++ ..+..+++|++|++++ +.++.+.+..|.++++|++|++++
T Consensus        13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSN-NRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCchhH-HHhhcccCCCEEECCC-CcCCEeCHhHccCCCCCCEEECCC
Confidence            5677888888777632 2  357888888888887654 5678888888888887 567777778888999999999999


Q ss_pred             CCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCCC
Q psy8551         488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSP  564 (581)
Q Consensus       488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~~  564 (581)
                      | .+..+++..|.++++|++|++++|.++.++.. +..+++|+.|++++|||.|+|+++||.+|....  ....+.|+.|
T Consensus        88 N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P  166 (193)
T 2wfh_A           88 N-RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGP  166 (193)
T ss_dssp             S-CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEES
T ss_pred             C-ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCc
Confidence            9 88888888899999999999999999998864 667999999999999999999999999999874  4455789999


Q ss_pred             cccccccccccCccccC
Q psy8551         565 APLKYKSLISLSAEDLG  581 (581)
Q Consensus       565 ~~~~~~~~~~~~~~~~~  581 (581)
                      ..++|+.+.++++++++
T Consensus       167 ~~l~g~~l~~~~~~~~~  183 (193)
T 2wfh_A          167 GEMADKLLLTTPSKKFT  183 (193)
T ss_dssp             GGGTTCBTTTSCGGGCC
T ss_pred             hHHCCCCcccCChHHee
Confidence            99999999999998763

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=4.7e-22  Score=193.95  Aligned_cols=224  Identities=21%  Similarity=0.250  Sum_probs=152.6

Q ss_pred             CCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEe
Q psy8551          66 IYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY  145 (581)
Q Consensus        66 ~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~  145 (581)
                      ..+++++|++++|.++.++. .+..+++|++|++++|.+                       +.+ +..++++++|++|+
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~-~l~~l~~L~~L~L~~n~l-----------------------~~l-p~~~~~l~~L~~L~  133 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPD-QAFRLSHLQHMTIDAAGL-----------------------MEL-PDTMQQFAGLETLT  133 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCS-CGGGGTTCSEEEEESSCC-----------------------CCC-CSCGGGGTTCSEEE
T ss_pred             cccceeEEEccCCCchhcCh-hhhhCCCCCEEECCCCCc-----------------------cch-hHHHhccCCCCEEE
Confidence            45789999999999998885 467799999999999864                       222 34477889999999


Q ss_pred             CCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCC---------CCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551         146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN---------GLGRLSALDLRGAGLTNISDNAFRGLSGLRSL  216 (581)
Q Consensus       146 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~---------~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  216 (581)
                      +++|.++.++. .+..+++|++|++++|.+.+..+..+.         ++++|+.|++++|.++.++ ..+..+++|++|
T Consensus       134 Ls~n~l~~lp~-~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp-~~l~~l~~L~~L  211 (328)
T 4fcg_A          134 LARNPLRALPA-SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLP-ASIANLQNLKSL  211 (328)
T ss_dssp             EESCCCCCCCG-GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCC-GGGGGCTTCCEE
T ss_pred             CCCCccccCcH-HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcch-HhhcCCCCCCEE
Confidence            99999997765 788899999999999776655444443         3777888888887777544 357777788888


Q ss_pred             ECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCC
Q psy8551         217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPK  296 (581)
Q Consensus       217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (581)
                      ++++|++++++. .+..+++|++|++++|.+....+..+..+++|+.|++++|.....++. .+..+++|++|++++|..
T Consensus       212 ~L~~N~l~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~L~L~~n~~  289 (328)
T 4fcg_A          212 KIRNSPLSALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL-DIHRLTQLEKLDLRGCVN  289 (328)
T ss_dssp             EEESSCCCCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT-TGGGCTTCCEEECTTCTT
T ss_pred             EccCCCCCcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcch-hhhcCCCCCEEeCCCCCc
Confidence            888887777764 477777788888877776665555566666666666655443333322 234444555555555444


Q ss_pred             ccccccccccCCCCCcEEecCCC
Q psy8551         297 LKTIEEGALVGLPNLYHLNLKEN  319 (581)
Q Consensus       297 ~~~~~~~~~~~~~~L~~L~l~~~  319 (581)
                      .+.+|. .+..+++++.+++..+
T Consensus       290 ~~~iP~-~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          290 LSRLPS-LIAQLPANCIILVPPH  311 (328)
T ss_dssp             CCCCCG-GGGGSCTTCEEECCGG
T ss_pred             hhhccH-HHhhccCceEEeCCHH
Confidence            444433 3444444444444433

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.87  E-value=4.5e-22  Score=180.97  Aligned_cols=188  Identities=24%  Similarity=0.327  Sum_probs=151.3

Q ss_pred             CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCC
Q psy8551          13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQ   91 (581)
Q Consensus        13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l   91 (581)
                      ||..|.|..   .++.|  .+.+++.+|..+++++++|+|++|+++.++. .+..+++|++|++++|+++.++...|..+
T Consensus         1 Cp~~C~C~~---~~v~c--~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   75 (208)
T 2o6s_A            1 CPSRCSCSG---TTVEC--YSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL   75 (208)
T ss_dssp             CCTTCEEET---TEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CcCCCEECC---CEEEe--cCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCC
Confidence            899999976   67999  9999999999999999999999999998876 57899999999999999999988888899


Q ss_pred             CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551          92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG  171 (581)
Q Consensus        92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~  171 (581)
                      ++|++|++++|.                       ++.+++..|.++++|++|++++|.++.++...+..+++|++|+++
T Consensus        76 ~~L~~L~Ls~n~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  132 (208)
T 2o6s_A           76 TSLTYLNLSTNQ-----------------------LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLY  132 (208)
T ss_dssp             TTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcCEEECCCCc-----------------------CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECC
Confidence            999999999875                       344555557788888888888888888877667788888888888


Q ss_pred             CCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCC
Q psy8551         172 LNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLT  235 (581)
Q Consensus       172 ~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  235 (581)
                      +|.++++++..+..+++|+.|++++|.+.       ..++.|+.|++..|++++..+..++.++
T Consensus       133 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          133 QNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            88888777766777788888888777543       3455677777777766654444454443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=4.9e-21  Score=181.81  Aligned_cols=195  Identities=29%  Similarity=0.450  Sum_probs=161.2

Q ss_pred             ccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCcc
Q psy8551         305 LVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAE  384 (581)
Q Consensus       305 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  384 (581)
                      ...+++|+.|++.++.++.++ .+..+++|++|++++|.+..                                      
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~--------------------------------------   77 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD--------------------------------------   77 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC--------------------------------------
T ss_pred             cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC--------------------------------------
Confidence            445677788888887777654 35667888888888876531                                      


Q ss_pred             ccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCC
Q psy8551         385 DLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS  464 (581)
Q Consensus       385 ~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~  464 (581)
                                 +  ..+..+++|++|++++|.+++.++..+..+++|++|++++|.+++..+..+..+++|++|++++| 
T Consensus        78 -----------~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-  143 (272)
T 3rfs_A           78 -----------I--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-  143 (272)
T ss_dssp             -----------C--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred             -----------c--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-
Confidence                       1  13556788999999999888888777888999999999999999888888888999999999884 


Q ss_pred             CeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc
Q psy8551         465 NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN  543 (581)
Q Consensus       465 ~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~  543 (581)
                      .++.+.+..+..+++|++|++++| .+..+++..+..+++|++|++++|.++.++.. +..+++|++|++++||+.|+|+
T Consensus       144 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          144 QLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            677787777889999999999999 78888888889999999999999999987754 6789999999999999999997


Q ss_pred             -hhHHHHHHhh
Q psy8551         544 -ILWLREMLVR  553 (581)
Q Consensus       544 -~~~~~~~~~~  553 (581)
                       ++|+..|...
T Consensus       223 ~l~~l~~~~n~  233 (272)
T 3rfs_A          223 GIRYLSEWINK  233 (272)
T ss_dssp             TTHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence             7777777655

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.87  E-value=1.8e-21  Score=192.77  Aligned_cols=207  Identities=21%  Similarity=0.369  Sum_probs=168.4

Q ss_pred             cEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCC
Q psy8551         312 YHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA  391 (581)
Q Consensus       312 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  391 (581)
                      +.++.+++.++.+|..+.  +.++.|++++|.+.                                              
T Consensus        21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~----------------------------------------------   52 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLS----------------------------------------------   52 (361)
T ss_dssp             TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCC----------------------------------------------
T ss_pred             CEEEeCCCCcCccCccCC--CCCCEEECCCCCCC----------------------------------------------
Confidence            567788888887776543  45788888887653                                              


Q ss_pred             CccccCccccC-CCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEec
Q psy8551         392 GLTNISDNAFR-GLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVR  470 (581)
Q Consensus       392 ~~~~i~~~~~~-~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  470 (581)
                         .+....|. ++++|+.|++++|.++.+++..|..+++|++|++++|.++.+.+..|..+++|+.|++++ +.+..+.
T Consensus        53 ---~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~  128 (361)
T 2xot_A           53 ---RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN-NHIVVVD  128 (361)
T ss_dssp             ---EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCEEC
T ss_pred             ---ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCC-CcccEEC
Confidence               23344455 688999999999999998888899999999999999999999888899999999999998 5788888


Q ss_pred             CCccCCCCCCCeeeCCCCCCceeecCCcc---CCCCCccEEEcCCCcceeec-cccccCCc--ceEEecCCCcccccCch
Q psy8551         471 KGAFADNLNLETLTLNKNPKLKIIEEDAL---VGLPNLYHLNLKENAFTSFS-ESMLAWPE--LRTIDIAENPIECGCNI  544 (581)
Q Consensus       471 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~---~~l~~L~~L~l~~n~l~~l~-~~~~~~~~--L~~L~l~~np~~c~c~~  544 (581)
                      +..|.++++|++|++++| .+..++...+   ..+++|+.|+|++|+|+.++ ..+..++.  ++.|++++|||.|+|++
T Consensus       129 ~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          129 RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            888999999999999999 8888877766   57999999999999999987 45666776  48999999999999999


Q ss_pred             hHH-HHHHhhc------CCCceeeCCCccccccc
Q psy8551         545 LWL-REMLVRR------NTSAVFCNSPAPLKYKS  571 (581)
Q Consensus       545 ~~~-~~~~~~~------~~~~~~c~~~~~~~~~~  571 (581)
                      .|+ ..|....      ....+.|..|....+..
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~C~~p~~~~~~~  241 (361)
T 2xot_A          208 YQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIF  241 (361)
T ss_dssp             HHHHHHHHHTTCHHHHTTGGGCEEESSSCCEEGG
T ss_pred             HHHHHHHHHhcCCchhccCcCCEeCCChHHcCcc
Confidence            986 5677653      24567899997666543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.87  E-value=2e-25  Score=237.60  Aligned_cols=414  Identities=14%  Similarity=0.078  Sum_probs=230.1

Q ss_pred             cCccEEEcccCCc-ccc---c------------ccccCCCcccEEEcCCCceeecCCCCCC-CCCcccEEeCCCCCCCCc
Q psy8551          45 PSIQRLVLSTNRI-KTV---D------------SAIPIYLSLQHVDLSHTTWLIIPIGGFE-PQEKLVELQLNHNKHFPQ  107 (581)
Q Consensus        45 ~~l~~L~L~~~~i-~~l---~------------~~~~~~~~L~~L~ls~~~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~  107 (581)
                      +++++|+|+++.. .++   |            .....+++|++|++++|.++......+. .+++|++|++++|..+..
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            6899999998752 221   1            1234688999999999987754433343 578999999998842111


Q ss_pred             ccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCccc----ccCccCcEEECCCCc--ceec-cC
Q psy8551         108 QIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF----IYLGMLAELRVGLNV--FTTL-AD  180 (581)
Q Consensus       108 ~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~----~~~~~L~~L~L~~n~--~~~~-~~  180 (581)
                      ..                     ....+.++++|++|++++|.+++.....+    ..+++|++|+++++.  +... ..
T Consensus       146 ~~---------------------l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          146 DG---------------------LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HH---------------------HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHH
T ss_pred             HH---------------------HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHH
Confidence            11                     11223357788888888877665443333    256678888887775  2110 11


Q ss_pred             CcCCCCCCCcEEEcCCC-CccccCccccCCCCCCcEEECCCCc-------CCccCccccCCCCCCCEE-ECCCCcccccC
Q psy8551         181 GAFNGLGRLSALDLRGA-GLTNISDNAFRGLSGLRSLVLTDNR-------LQSIPTKQLSKLTRLEEL-EIGQNGFSMLE  251 (581)
Q Consensus       181 ~~l~~l~~L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L-~l~~~~~~~~~  251 (581)
                      ..+..+++|+.|++++| .++. .+..+..+++|++|++..+.       +.+++ ..+.++++|+.+ .+.......+ 
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~-~~l~~~~~L~~Ls~~~~~~~~~l-  281 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLS-VALSGCKELRCLSGFWDAVPAYL-  281 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHH-HHHHTCTTCCEEECCBTCCGGGG-
T ss_pred             HHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHH-HHHhcCCCcccccCCcccchhhH-
Confidence            11234678888888877 3333 33445567778888765442       22333 245667777777 3333222111 


Q ss_pred             CcccCCCcccceeeecCCCCceeec-CccCCCCCCCCEEeCCCCCCccccc-cccccCCCCCcEEecCC---------CC
Q psy8551         252 AGCFKGLSYLKRLEITGASNLTRVR-KGAFADNLNLETLTLNKNPKLKTIE-EGALVGLPNLYHLNLKE---------NA  320 (581)
Q Consensus       252 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~L~~L~l~~---------~~  320 (581)
                      +..+..+++|+.|++++|. +.... ...+..+++|++|++++|  ++... ......+++|++|++.+         +.
T Consensus       282 ~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~  358 (594)
T 2p1m_B          282 PAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVA  358 (594)
T ss_dssp             GGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSC
T ss_pred             HHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCCCEEEEecCcccccccCCC
Confidence            1222345677777777765 33221 222446677888888776  22211 11223467788887732         33


Q ss_pred             Ccc--ccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCc
Q psy8551         321 FTS--FSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD  398 (581)
Q Consensus       321 l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~  398 (581)
                      ++.  +......+++|++|.+..+.+.....                                                .
T Consensus       359 l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~------------------------------------------------~  390 (594)
T 2p1m_B          359 LTEQGLVSVSMGCPKLESVLYFCRQMTNAAL------------------------------------------------I  390 (594)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEEESCCCHHHH------------------------------------------------H
T ss_pred             CCHHHHHHHHHhchhHHHHHHhcCCcCHHHH------------------------------------------------H
Confidence            331  11112236777777766655431100                                                0


Q ss_pred             cccCCCCCCCEEEcC--C----CcCCccCh-----hhhcCCCCCcEeecCCCcceeeccccccC-CccccEEeecCCCCe
Q psy8551         399 NAFRGLSGLRSLVLT--D----NRLQSIPT-----KQLSKLTRLEELEIGQNGFSMLEAGCFKG-LSYLKRLEITGASNL  466 (581)
Q Consensus       399 ~~~~~~~~L~~L~l~--~----n~l~~~~~-----~~l~~l~~L~~L~l~~~~i~~~~~~~~~~-~~~L~~L~l~~~~~l  466 (581)
                      .....+++|+.|+++  +    +.++..+.     ..+..+++|++|++++ .+++.....+.. +++|+.|++++|. +
T Consensus       391 ~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~-i  468 (594)
T 2p1m_B          391 TIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG-D  468 (594)
T ss_dssp             HHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC-S
T ss_pred             HHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC-C
Confidence            001125677777776  3    34443221     1245677777777766 455443333433 6777777777654 3


Q ss_pred             eEecCCcc-CCCCCCCeeeCCCCCCceeecC-CccCCCCCccEEEcCCCccee-ecccc-ccCCcceEEecCCC
Q psy8551         467 TRVRKGAF-ADNLNLETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTS-FSESM-LAWPELRTIDIAEN  536 (581)
Q Consensus       467 ~~~~~~~~-~~~~~L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-l~~~~-~~~~~L~~L~l~~n  536 (581)
                      ++.....+ ..+++|++|++++|+. +.... .....+++|++|++++|+++. ....+ ..+|.++...+.++
T Consensus       469 ~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~  541 (594)
T 2p1m_B          469 SDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDER  541 (594)
T ss_dssp             SHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred             cHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCC
Confidence            33322222 4577888888888844 33222 234457788888888887752 11122 34666665555544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=5e-23  Score=199.78  Aligned_cols=228  Identities=20%  Similarity=0.177  Sum_probs=169.9

Q ss_pred             CCCCCcCccEEEcccCCccc--cccccc-------CCCcccEEEcCCCceeecCCCCC--CCCCcccEEeCCCCCCCCcc
Q psy8551          40 PSHSNPSIQRLVLSTNRIKT--VDSAIP-------IYLSLQHVDLSHTTWLIIPIGGF--EPQEKLVELQLNHNKHFPQQ  108 (581)
Q Consensus        40 p~~~~~~l~~L~L~~~~i~~--l~~~~~-------~~~~L~~L~ls~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~  108 (581)
                      |..++..+++|+|++|.++.  ++..+.       ++++|++|++++|.++...+..+  ..+++|++|++++|.+    
T Consensus        58 p~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l----  133 (312)
T 1wwl_A           58 LGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSW----  133 (312)
T ss_dssp             CHHHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBC----
T ss_pred             HHHHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCC----
Confidence            77777789999999999964  555554       79999999999999985443444  8999999999999874    


Q ss_pred             cccccCCcccccccCcccccccchhhcCCC-----CCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceec---c-
Q psy8551         109 IVCSIISPRRVEIFGQNRISRIDQACFEGL-----TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTL---A-  179 (581)
Q Consensus       109 ~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~-----~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~---~-  179 (581)
                                         +++ +..++.+     ++|++|++++|.+..++...+..+++|++|++++|.+.+.   + 
T Consensus       134 -------------------~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          134 -------------------ATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             -------------------SSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             -------------------cch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence                               222 2223333     8999999999999999887899999999999999987643   2 


Q ss_pred             CCcCCCCCCCcEEEcCCCCcccc---CccccCCCCCCcEEECCCCcCCccC-ccccCCCCCCCEEECCCCcccccCCccc
Q psy8551         180 DGAFNGLGRLSALDLRGAGLTNI---SDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGCF  255 (581)
Q Consensus       180 ~~~l~~l~~L~~L~L~~~~l~~~---~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~  255 (581)
                      ...+..+++|+.|++++|.++.+   ....+..+++|++|++++|++++.+ ...+..+++|++|++++|.++.++...+
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~  273 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP  273 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc
Confidence            12247889999999999998843   3344567899999999999999865 3456678999999999998885544321


Q ss_pred             CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc
Q psy8551         256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT  322 (581)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  322 (581)
                         ++|                         ++|++++| .++.++.  +..+++|+.|++++|.++
T Consensus       274 ---~~L-------------------------~~L~Ls~N-~l~~~p~--~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          274 ---AKL-------------------------SVLDLSYN-RLDRNPS--PDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             ---SEE-------------------------EEEECCSS-CCCSCCC--TTTSCEEEEEECTTCTTT
T ss_pred             ---CCc-------------------------eEEECCCC-CCCCChh--HhhCCCCCEEeccCCCCC
Confidence               344                         44555555 3444432  556666777777766655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=2.6e-21  Score=177.09  Aligned_cols=162  Identities=27%  Similarity=0.389  Sum_probs=135.9

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      ++||..|.|..   ..+.|  .+.+++.+|..+++++++|+|++|.++.++. .|..+++|++|+|++|.++.+.+..|.
T Consensus         3 ~~CP~~C~C~~---~~v~c--~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~   77 (220)
T 2v9t_B            3 LHCPAACTCSN---NIVDC--RGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQ   77 (220)
T ss_dssp             CCSCTTSEEET---TEEEC--TTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             CCCCCCCEECC---CEEEc--CCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhh
Confidence            58999999986   67999  9999999999999999999999999998876 788999999999999999998888899


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR  169 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  169 (581)
                      ++++|++|++++|.                       ++.+++..|.++++|+.|++++|.++.++...|..+++|++|+
T Consensus        78 ~l~~L~~L~Ls~N~-----------------------l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B           78 GLRSLNSLVLYGNK-----------------------ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             TCSSCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCcCCCEEECCCCc-----------------------CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEE
Confidence            99999999999875                       4455566677788888888888888887777777788888888


Q ss_pred             CCCCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551         170 VGLNVFTTLADGAFNGLGRLSALDLRGAGLT  200 (581)
Q Consensus       170 L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~  200 (581)
                      |++|.++.+++..+..+++|+.|++++|.+.
T Consensus       135 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          135 LYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            8888877777666777777777777777654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=2.2e-21  Score=180.53  Aligned_cols=207  Identities=18%  Similarity=0.281  Sum_probs=148.2

Q ss_pred             CcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhc
Q psy8551          56 RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACF  135 (581)
Q Consensus        56 ~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l  135 (581)
                      .++.+|. +  .++|++|++++|+++.++...|..+++|++|++++|..                      ++.+++.+|
T Consensus        22 ~l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~----------------------l~~i~~~~f   76 (239)
T 2xwt_C           22 DIQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVT----------------------LQQLESHSF   76 (239)
T ss_dssp             SCSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSS----------------------CCEECTTTE
T ss_pred             CccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCC----------------------cceeCHhHc
Confidence            3777877 3  34899999999999999988889999999999998741                      445566668


Q ss_pred             CCCCCCcEEeCCC-CcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCc---EEEcCCC-CccccCccccCCC
Q psy8551         136 EGLTALRILYLDD-NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS---ALDLRGA-GLTNISDNAFRGL  210 (581)
Q Consensus       136 ~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~---~L~L~~~-~l~~~~~~~l~~~  210 (581)
                      .++++|++|++++ |.++.++...|..+++|++|++++|.+++++.  +..+++|+   .|++++| .++.+++..|..+
T Consensus        77 ~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l  154 (239)
T 2xwt_C           77 YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGL  154 (239)
T ss_dssp             ESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTT
T ss_pred             CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccch
Confidence            8888999999988 88888887778888888888888888877654  66777776   7888877 7777776667777


Q ss_pred             CCCc-EEECCCCcCCccCccccCCCCCCCEEECCCCc-ccccCCcccCCC-cccceeeecCCCCceeecCccCCCCCCCC
Q psy8551         211 SGLR-SLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG-FSMLEAGCFKGL-SYLKRLEITGASNLTRVRKGAFADNLNLE  287 (581)
Q Consensus       211 ~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~  287 (581)
                      ++|+ +|++++|+++.++...+.. ++|++|++++|. ++.+++..|..+ ++|+.|+++++ .++.++..   .+++|+
T Consensus       155 ~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~---~~~~L~  229 (239)
T 2xwt_C          155 CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK---GLEHLK  229 (239)
T ss_dssp             BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCT---TCTTCS
T ss_pred             hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChh---HhccCc
Confidence            7777 7777777777776555554 677777777773 666666556655 55666665553 23333322   233444


Q ss_pred             EEeCCCC
Q psy8551         288 TLTLNKN  294 (581)
Q Consensus       288 ~L~l~~~  294 (581)
                      .|++.++
T Consensus       230 ~L~l~~~  236 (239)
T 2xwt_C          230 ELIARNT  236 (239)
T ss_dssp             EEECTTC
T ss_pred             eeeccCc
Confidence            4444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=6.2e-21  Score=181.10  Aligned_cols=221  Identities=25%  Similarity=0.311  Sum_probs=115.9

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      .+..+++.++.+.++. ....+++|+.|+++++.++.++  .+..+++|++|++++|.+                     
T Consensus        20 ~l~~l~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~--~l~~l~~L~~L~l~~n~l---------------------   75 (272)
T 3rfs_A           20 ETIKANLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVRYLALGGNKL---------------------   75 (272)
T ss_dssp             HHHHHHHTCSCTTSEE-CHHHHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECTTSCC---------------------
T ss_pred             HHHHHHhcCccccccc-ccccccceeeeeeCCCCccccc--ccccCCCCcEEECCCCCC---------------------
Confidence            3344444444444332 2334555666666665555443  355555666666665542                     


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN  205 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  205 (581)
                        +.+  ..+..+++|++|++++|.++.++...+..+++|++|++++|.++++++..+..+++|++|++++|.++.+.+.
T Consensus        76 --~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  151 (272)
T 3rfs_A           76 --HDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG  151 (272)
T ss_dssp             --CCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             --CCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence              111  1244555555555555555555554455555555555555555555554455555555555555555555554


Q ss_pred             ccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCC
Q psy8551         206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN  285 (581)
Q Consensus       206 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  285 (581)
                      .+..+++|++|++++|+++++++..+..+++|++|++++|.+...++..+..+++|+.|++.+|..        ...+++
T Consensus       152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------~~~~~~  223 (272)
T 3rfs_A          152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------DCTCPG  223 (272)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB--------CCCTTT
T ss_pred             HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc--------cccCcH
Confidence            455555566666665555555544455555566666665555555555555555566665555421        122344


Q ss_pred             CCEEeCCCCCCcccccc
Q psy8551         286 LETLTLNKNPKLKTIEE  302 (581)
Q Consensus       286 L~~L~l~~~~~~~~~~~  302 (581)
                      ++.+++..|...+.++.
T Consensus       224 l~~l~~~~n~~~g~ip~  240 (272)
T 3rfs_A          224 IRYLSEWINKHSGVVRN  240 (272)
T ss_dssp             THHHHHHHHHTGGGBBC
T ss_pred             HHHHHHHHHhCCCcccC
Confidence            55555555433344443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.85  E-value=8.4e-21  Score=169.75  Aligned_cols=168  Identities=26%  Similarity=0.494  Sum_probs=146.1

Q ss_pred             CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccc-cccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551         408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG-CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN  486 (581)
Q Consensus       408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~  486 (581)
                      +.++++++.++.++. .+  .++|++|++++|.++...+. .+..+++|++|++++ +.++.+.+..|.++++|++|+++
T Consensus        11 ~~l~~s~~~l~~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPR-DI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCSSCCS-CC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcCcCcc-CC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHcCCcccCCEEECC
Confidence            688899998888774 23  23889999999999888764 578899999999988 57888888889999999999999


Q ss_pred             CCCCceeecCCccCCCCCccEEEcCCCcceee-ccccccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCC
Q psy8551         487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSF-SESMLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNS  563 (581)
Q Consensus       487 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l-~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~  563 (581)
                      +| .+..+++..+.++++|++|++++|+++.+ |..+..+++|++|++++|||.|+|++.|+..|.+..  ......|..
T Consensus        87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~  165 (192)
T 1w8a_A           87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGA  165 (192)
T ss_dssp             SC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCS
T ss_pred             CC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCC
Confidence            99 88888888899999999999999999976 667888999999999999999999999999999774  333457999


Q ss_pred             CcccccccccccCcccc
Q psy8551         564 PAPLKYKSLISLSAEDL  580 (581)
Q Consensus       564 ~~~~~~~~~~~~~~~~~  580 (581)
                      |..++|+++.+++.+++
T Consensus       166 P~~l~~~~l~~l~~~~~  182 (192)
T 1w8a_A          166 PSKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             STTTTTSBGGGSCTTTC
T ss_pred             ChHHcCCChhhCcHhhc
Confidence            99999999999998876

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.4e-21  Score=193.51  Aligned_cols=192  Identities=24%  Similarity=0.299  Sum_probs=133.0

Q ss_pred             hhhhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-ccc-CCCcccEEEcCCCceeecCC
Q psy8551           8 ELRSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIP-IYLSLQHVDLSHTTWLIIPI   85 (581)
Q Consensus         8 ~~~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~-~~~~L~~L~ls~~~l~~~~~   85 (581)
                      ....+||..|.|..   ..+.|  .+..++.+|..+++.+++|+|++|+++.++. .+. .+++|++|+|++|+|+.++.
T Consensus         7 ~~~~~Cp~~C~C~~---~~l~c--~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~   81 (361)
T 2xot_A            7 RSVVSCPANCLCAS---NILSC--SKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS   81 (361)
T ss_dssp             CCCTTCCTTCEEET---TEEEC--CSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT
T ss_pred             CcCCCCCCCCEECC---CEEEe--CCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh
Confidence            34578999999976   57899  9999999999999999999999999998876 455 88999999999999988887


Q ss_pred             CCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccC
Q psy8551          86 GGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGML  165 (581)
Q Consensus        86 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L  165 (581)
                      ..|..+++|++|++++|.                       ++.+.+..|.++++|+.|++++|.+..++...|..+++|
T Consensus        82 ~~~~~l~~L~~L~Ls~N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L  138 (361)
T 2xot_A           82 EAFVPVPNLRYLDLSSNH-----------------------LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQL  138 (361)
T ss_dssp             TTTTTCTTCCEEECCSSC-----------------------CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred             hhccCCCCCCEEECCCCc-----------------------CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccC
Confidence            778888888888888775                       344445556666667777666666666655555555666


Q ss_pred             cEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCC--CCEEECC
Q psy8551         166 AELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTR--LEELEIG  243 (581)
Q Consensus       166 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~  243 (581)
                      ++|+|++|.++.++...+..                     +..+++|+.|++++|+++.++...+..++.  ++.|++.
T Consensus       139 ~~L~L~~N~l~~l~~~~~~~---------------------~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          139 QKLYLSQNQISRFPVELIKD---------------------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CEEECCSSCCCSCCGGGTC-------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CEEECCCCcCCeeCHHHhcC---------------------cccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEec
Confidence            66666665555544433310                     033555555666666555555444554544  3566666


Q ss_pred             CCccc
Q psy8551         244 QNGFS  248 (581)
Q Consensus       244 ~~~~~  248 (581)
                      +|.+.
T Consensus       198 ~N~~~  202 (361)
T 2xot_A          198 NNPLE  202 (361)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            66554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.85  E-value=1.6e-20  Score=172.98  Aligned_cols=185  Identities=22%  Similarity=0.407  Sum_probs=158.2

Q ss_pred             cccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCC
Q psy8551         386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN  465 (581)
Q Consensus       386 ~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~  465 (581)
                      +.+....+..++...   .++|+.|++++|.++++.+..+..+++|++|++++|.+..+++..|..+++|+.|++++ +.
T Consensus        24 v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~-N~   99 (229)
T 3e6j_A           24 VDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT-NQ   99 (229)
T ss_dssp             EECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SC
T ss_pred             eEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC-Cc
Confidence            445555566666543   38899999999999999888999999999999999999999888899999999999998 57


Q ss_pred             eeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-ccccCCcceEEecCCCcccccCc-
Q psy8551         466 LTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCN-  543 (581)
Q Consensus       466 l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~l~~np~~c~c~-  543 (581)
                      ++.+....|..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++||+.|+|. 
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~  177 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCN-KLTELP-RGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD  177 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSS-CCCSCC-TTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred             CCccChhHhCcchhhCeEeccCC-cccccC-cccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence            88888888999999999999999 788885 557899999999999999999884 46779999999999999999996 


Q ss_pred             hhHHHHHHhhc-------------CCCceeeCCCcccccccccccCcccc
Q psy8551         544 ILWLREMLVRR-------------NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       544 ~~~~~~~~~~~-------------~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      ..|+..|...+             ....+.|+.+    |.++.+++++++
T Consensus       178 ~~~l~~~~~~~~~~~~~~~g~~v~~~~~~~C~~~----~~~~~~~~~~~~  223 (229)
T 3e6j_A          178 IMYLRNWVADHTSIAMRWDGKAVNDPDSAKCAGT----NTPVRAVTEAST  223 (229)
T ss_dssp             GHHHHHHHHHCGGGEEEESSSEEECTTCSBBTTT----CCBGGGCCGGGC
T ss_pred             hHHHHHHHHhCccccccccCcccCCCCcCccCCC----Cccceecccccc
Confidence            88999999874             2334568776    678888887764

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=173.10  Aligned_cols=162  Identities=27%  Similarity=0.398  Sum_probs=135.5

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc--cccCCCcccEEEcCCCceeecCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS--AIPIYLSLQHVDLSHTTWLIIPIGGF   88 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~--~~~~~~~L~~L~ls~~~l~~~~~~~~   88 (581)
                      .+||..|.|..   ..+.|  ++..++.+|..+++.+++|+|++|.++.++.  .|..+++|++|++++|.++.++...|
T Consensus         3 ~~CP~~C~C~~---~~l~~--s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~   77 (220)
T 2v70_A            3 LACPEKCRCEG---TTVDC--SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF   77 (220)
T ss_dssp             -CCCTTCEEET---TEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTT
T ss_pred             CCCCCCCEECC---CEeEe--CCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHh
Confidence            57999999986   57889  9999999999999999999999999998843  58899999999999999999998889


Q ss_pred             CCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEE
Q psy8551          89 EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAEL  168 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L  168 (581)
                      ..+++|++|++++|.                       ++.+.+..|.++++|++|++++|.++.+++..+..+++|++|
T Consensus        78 ~~l~~L~~L~Ls~N~-----------------------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           78 EGASGVNEILLTSNR-----------------------LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             TTCTTCCEEECCSSC-----------------------CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCCCCCEEECCCCc-----------------------cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            999999999999875                       455566667888888888888888888877677778888888


Q ss_pred             ECCCCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551         169 RVGLNVFTTLADGAFNGLGRLSALDLRGAGLT  200 (581)
Q Consensus       169 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~  200 (581)
                      ++++|.++++.+..|..+++|+.|++++|.+.
T Consensus       135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            88888887776667777777777777777655

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.84  E-value=1.3e-18  Score=174.54  Aligned_cols=335  Identities=18%  Similarity=0.316  Sum_probs=165.4

Q ss_pred             eeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCccc
Q psy8551          80 WLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSF  159 (581)
Q Consensus        80 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~  159 (581)
                      ++.+...+|.++.+|+.+.+..+                        ++.+...+|.+|++|+.+++..+ ++.++..+|
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~------------------------i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF  113 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST------------------------VREIGEFAFENCSKLEIINIPDS-VKMIGRCTF  113 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT------------------------CCEECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC------------------------ccCcchhHhhCCCCCcEEEeCCC-ceEccchhh
Confidence            45555566666666666666542                        34455555666666666666533 555555555


Q ss_pred             ccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCE
Q psy8551         160 IYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEE  239 (581)
Q Consensus       160 ~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  239 (581)
                      .++.+|+.+.+..+ +..+...+|.++..++.....  .+..+...+|..+.+|+.+.+..+ +..+...+|..+++|+.
T Consensus       114 ~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~--~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~  189 (394)
T 4fs7_A          114 SGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPE--GVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKS  189 (394)
T ss_dssp             TTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCB
T ss_pred             cccccchhhcccCc-eeeecceeeecccccccccCc--cccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceE
Confidence            55666655555432 344444445444333222211  122333344555555555555443 33444445555555555


Q ss_pred             EECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCC
Q psy8551         240 LEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN  319 (581)
Q Consensus       240 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  319 (581)
                      +.+..+ +..+....|.++..|+.+.+..  ....+....+ ...+|+.+.+...  ...+....+..+..++.+.+..+
T Consensus       190 i~l~~~-~~~I~~~~F~~~~~L~~i~~~~--~~~~i~~~~~-~~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~  263 (394)
T 4fs7_A          190 IKLPRN-LKIIRDYCFAECILLENMEFPN--SLYYLGDFAL-SKTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN  263 (394)
T ss_dssp             CCCCTT-CCEECTTTTTTCTTCCBCCCCT--TCCEECTTTT-TTCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT
T ss_pred             EEcCCC-ceEeCchhhccccccceeecCC--CceEeehhhc-ccCCCceEEECCC--ceecccccccccccceeEEcCCC
Confidence            555443 3444444444444444444432  1222222211 1234444444332  33333334444444444444333


Q ss_pred             CCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcc
Q psy8551         320 AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDN  399 (581)
Q Consensus       320 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~  399 (581)
                      ...                                                                         +...
T Consensus       264 ~~~-------------------------------------------------------------------------i~~~  270 (394)
T 4fs7_A          264 KLR-------------------------------------------------------------------------IGGS  270 (394)
T ss_dssp             TCE-------------------------------------------------------------------------ECSC
T ss_pred             cce-------------------------------------------------------------------------eecc
Confidence            211                                                                         2233


Q ss_pred             ccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCC
Q psy8551         400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN  479 (581)
Q Consensus       400 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  479 (581)
                      .|..+..++.+......   ++...+..+.+|+.+.+..+ ++.++..+|.+|++|+.+++.+  .++.+...+|.+|.+
T Consensus       271 ~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~  344 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTS  344 (394)
T ss_dssp             TTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTT
T ss_pred             ccccccccceeccCcee---eccccccccccccccccccc-cceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCC
Confidence            34444555555444332   22233555556666655433 5555555666666666666642  356666666666666


Q ss_pred             CCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEE
Q psy8551         480 LETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTI  531 (581)
Q Consensus       480 L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L  531 (581)
                      |+.+.+..+  ++.++..+|.+|++|+++++..+ ++.+...+..+++|+++
T Consensus       345 L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          345 LSNINFPLS--LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCEECCCTT--CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEEEEE
T ss_pred             CCEEEECcc--ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCCcEE
Confidence            666666544  55666666666666766666542 44444455566666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.83  E-value=1.5e-18  Score=173.99  Aligned_cols=318  Identities=16%  Similarity=0.273  Sum_probs=212.5

Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN  205 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  205 (581)
                      .++.+...+|.+|.+|+.+.+.. .++.+...+|.+|.+|+.+++..+ ++.+...+|.+++.|+.+.+..+ +..+...
T Consensus        58 ~VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           58 DVVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             eEeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            35666677777777777777763 466676667777777777777643 55666666666666666555432 3334444


Q ss_pred             ccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCC
Q psy8551         206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN  285 (581)
Q Consensus       206 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~  285 (581)
                      +|..+..+. ..+.. ....+...+|                        .++.+|+.+.+..  .+..+....|.++.+
T Consensus       135 aF~~~~~~~-~~~~~-~~~~i~~~aF------------------------~~c~~L~~i~l~~--~~~~I~~~~F~~c~~  186 (394)
T 4fs7_A          135 AFKGCDFKE-ITIPE-GVTVIGDEAF------------------------ATCESLEYVSLPD--SMETLHNGLFSGCGK  186 (394)
T ss_dssp             TTTTCCCSE-EECCT-TCCEECTTTT------------------------TTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred             eeecccccc-cccCc-cccccchhhh------------------------cccCCCcEEecCC--ccceeccccccCCCC
Confidence            444443222 11111 1223333344                        4444455444432  334455555566666


Q ss_pred             CCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551         286 LETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV  365 (581)
Q Consensus       286 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~  365 (581)
                      |+.+.+..+  +..++..+|..+..|+.+.+..+.. .+.+.......|+.+.+...                       
T Consensus       187 L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~i~ip~~-----------------------  240 (394)
T 4fs7_A          187 LKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKNIIIPDS-----------------------  240 (394)
T ss_dssp             CCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCEEEECTT-----------------------
T ss_pred             ceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCceEEECCC-----------------------
Confidence            666666553  5555566677777777766655432 23334444566777766542                       


Q ss_pred             eecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551         366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~  445 (581)
                                                 ...+....|.++..++.+.+..+ ...+....+..+..++.+......   .+
T Consensus       241 ---------------------------~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~---i~  289 (394)
T 4fs7_A          241 ---------------------------FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVI---VP  289 (394)
T ss_dssp             ---------------------------CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSE---EC
T ss_pred             ---------------------------ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCcee---ec
Confidence                                       23455667888999999999875 444555778899999999886653   45


Q ss_pred             cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec-ccccc
Q psy8551         446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ESMLA  524 (581)
Q Consensus       446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~~  524 (581)
                      ..+|..+.+|+.+.+.+  .++.+...+|.+|.+|+.+++.+  .++.++..+|.+|.+|+.+++..+ ++.+. ..+..
T Consensus       290 ~~~F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~  364 (394)
T 4fs7_A          290 EKTFYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQG  364 (394)
T ss_dssp             TTTTTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTT
T ss_pred             ccccccccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhC
Confidence            66788999999999974  58899999999999999999975  488898999999999999999876 77775 56778


Q ss_pred             CCcceEEecCCC
Q psy8551         525 WPELRTIDIAEN  536 (581)
Q Consensus       525 ~~~L~~L~l~~n  536 (581)
                      |++|+++++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            999999999654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.83  E-value=8e-20  Score=180.17  Aligned_cols=240  Identities=22%  Similarity=0.253  Sum_probs=159.8

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI  127 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l  127 (581)
                      +.++.++++++.+|..+  .+++++|+|++|+|+.++..+|.++++|++|++++|.+                      .
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i----------------------~   67 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----------------------L   67 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT----------------------C
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC----------------------C
Confidence            56788999999999765  46899999999999999988899999999999999864                      2


Q ss_pred             cccchhhcCCCCCCcE-EeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCC-CCccccCcc
Q psy8551         128 SRIDQACFEGLTALRI-LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRG-AGLTNISDN  205 (581)
Q Consensus       128 ~~~~~~~l~~~~~L~~-L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~-~~l~~~~~~  205 (581)
                      +.++..+|.++++++. +.+.+|++..+++..|..+++|++|++++|.+..+++..+....++..+++.+ +.+..+...
T Consensus        68 ~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~  147 (350)
T 4ay9_X           68 EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN  147 (350)
T ss_dssp             CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT
T ss_pred             CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc
Confidence            3345566777877665 45566788888777788888888888888888777765565666677777754 456666655


Q ss_pred             ccCCCC-CCcEEECCCCcCCccCccccCCCCCCCEEECCC-CcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551         206 AFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ-NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN  283 (581)
Q Consensus       206 ~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (581)
                      .|..+. .++.|++++|+++.++...+. ..+|+++++.+ |.++.++...|..+++|+.|++++| .++.++...+   
T Consensus       148 ~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~---  222 (350)
T 4ay9_X          148 SFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGL---  222 (350)
T ss_dssp             SSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSC---
T ss_pred             chhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhh---
Confidence            555543 466777777777766654443 34566666653 5555565555666666666666654 3444444332   


Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE  318 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (581)
                      .+|+.|.+.++..++.+|.  +..+++|+.+++.+
T Consensus       223 ~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          223 ENLKKLRARSTYNLKKLPT--LEKLVALMEASLTY  255 (350)
T ss_dssp             TTCCEEECTTCTTCCCCCC--TTTCCSCCEEECSC
T ss_pred             ccchHhhhccCCCcCcCCC--chhCcChhhCcCCC
Confidence            3444444444434444442  44555555555543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=6.3e-20  Score=177.27  Aligned_cols=188  Identities=23%  Similarity=0.331  Sum_probs=145.3

Q ss_pred             CcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      .+++++|+++++.++.++ .+..+++|++|++++|.++.++.  +..+++|++|++++|.+                   
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l-------------------   97 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-------------------   97 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-------------------
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-------------------
Confidence            468899999999888887 57888899999999998888775  88888899999988863                   


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                          +.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.++++++  +..+++|+.|++++|.++.+.
T Consensus        98 ----~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~  167 (308)
T 1h6u_A           98 ----KNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT  167 (308)
T ss_dssp             ----SCCG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG
T ss_pred             ----CCch--hhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCCh
Confidence                2221  3677788888888888887765  37778888888888888777654  677788888888888877665


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  269 (581)
                      +  +..+++|+.|++++|+++.+++  +..+++|++|++++|.+....+  +..+++|+.|++.+|
T Consensus       168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEE
T ss_pred             h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCC
Confidence            4  7778888888888888877764  6777888888888887776653  566777777777664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=3.6e-19  Score=171.94  Aligned_cols=197  Identities=25%  Similarity=0.371  Sum_probs=130.4

Q ss_pred             CCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcc
Q psy8551         256 KGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELR  335 (581)
Q Consensus       256 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  335 (581)
                      ..++.|+.|++.++ .+..++  .+..+++|++|++++| .+..++.  +..+++|+.|++++|.++.++ .+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~-~i~~l~--~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGT-GVTTIE--GVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTS-CCCCCT--TGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred             HHcCCcCEEEeeCC-CccCch--hhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence            34566777777765 344433  3556677777777777 5666554  667777777777777777654 466677777


Q ss_pred             eEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC
Q psy8551         336 TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN  415 (581)
Q Consensus       336 ~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n  415 (581)
                      +|++++|.+..                                                 ++  .+..+++|+.|++++|
T Consensus       111 ~L~l~~n~l~~-------------------------------------------------~~--~l~~l~~L~~L~l~~n  139 (308)
T 1h6u_A          111 TLDLTSTQITD-------------------------------------------------VT--PLAGLSNLQVLYLDLN  139 (308)
T ss_dssp             EEECTTSCCCC-------------------------------------------------CG--GGTTCTTCCEEECCSS
T ss_pred             EEECCCCCCCC-------------------------------------------------ch--hhcCCCCCCEEECCCC
Confidence            77777776531                                                 11  2455677777777777


Q ss_pred             cCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeec
Q psy8551         416 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE  495 (581)
Q Consensus       416 ~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~  495 (581)
                      .+++.++  +..+++|++|++++|.+++..+  +..+++|++|++++| .++.+.+  +..+++|++|++++| .+..++
T Consensus       140 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N-~l~~~~  211 (308)
T 1h6u_A          140 QITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNN-QISDVS  211 (308)
T ss_dssp             CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTS-CCCBCG
T ss_pred             ccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC-ccCcChh--hcCCCCCCEEEccCC-ccCccc
Confidence            7776654  6677777777777777776554  667777777777763 4544433  566777777777777 555554


Q ss_pred             CCccCCCCCccEEEcCCCcceeecc
Q psy8551         496 EDALVGLPNLYHLNLKENAFTSFSE  520 (581)
Q Consensus       496 ~~~~~~l~~L~~L~l~~n~l~~l~~  520 (581)
                      +  +..+++|++|++++|.++..|.
T Consensus       212 ~--l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          212 P--LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             G--GTTCTTCCEEEEEEEEEECCCE
T ss_pred             c--ccCCCCCCEEEccCCeeecCCe
Confidence            2  6677777777777777765443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=3e-20  Score=182.69  Aligned_cols=250  Identities=16%  Similarity=0.145  Sum_probs=174.1

Q ss_pred             cCccEEEcccCCcccccccccCC--CcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccccc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIY--LSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF  122 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~--~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  122 (581)
                      ..+++++++++.+.  +..+..+  ++++.|++++|.++..... +..+++|++|++++|.+                  
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l------------------  105 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVI------------------  105 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEE------------------
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCc------------------
Confidence            35788999988877  4456666  8899999999998877755 45689999999998853                  


Q ss_pred             Cccccccc-chhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCC-cceec-cCCcCCCCCCCcEEEcCCC-C
Q psy8551         123 GQNRISRI-DQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLN-VFTTL-ADGAFNGLGRLSALDLRGA-G  198 (581)
Q Consensus       123 ~~~~l~~~-~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~L~~~-~  198 (581)
                           +.. .+..+..+++|++|++++|.+++.....+..+++|++|++++| .+++. .+..+.++++|+.|++++| .
T Consensus       106 -----~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~  180 (336)
T 2ast_B          106 -----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD  180 (336)
T ss_dssp             -----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred             -----CHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence                 221 2344677889999999988887655556777888999999888 56542 2334667788888888888 7


Q ss_pred             cccc-CccccCCCC-CCcEEECCCC--cCC--ccCccccCCCCCCCEEECCCCc-ccccCCcccCCCcccceeeecCCCC
Q psy8551         199 LTNI-SDNAFRGLS-GLRSLVLTDN--RLQ--SIPTKQLSKLTRLEELEIGQNG-FSMLEAGCFKGLSYLKRLEITGASN  271 (581)
Q Consensus       199 l~~~-~~~~l~~~~-~L~~L~l~~n--~l~--~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~  271 (581)
                      ++.. .+..+..++ +|++|++++|  .++  .++ ..+..+++|++|++++|. ++......+..+++|+.|++++|..
T Consensus       181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~  259 (336)
T 2ast_B          181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYD  259 (336)
T ss_dssp             CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHH-HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTT
T ss_pred             cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHH-HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCC
Confidence            7753 234466778 8888998888  444  233 456678888888888887 5555455567778888888887764


Q ss_pred             ceeecCccCCCCCCCCEEeCCCCCCccccccccccCC-CCCcEEecCCCCCccccc
Q psy8551         272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGL-PNLYHLNLKENAFTSFSE  326 (581)
Q Consensus       272 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~  326 (581)
                      +.......+..+++|+.|++++|  +   +...+..+ ..+..|++++|.+++..+
T Consensus       260 ~~~~~~~~l~~~~~L~~L~l~~~--i---~~~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          260 IIPETLLELGEIPTLKTLQVFGI--V---PDGTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEECTTS--S---CTTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CCHHHHHHHhcCCCCCEEeccCc--c---CHHHHHHHHhhCcceEEecccCccccC
Confidence            44333345666778888888876  2   22222222 235556677777775433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=1.8e-18  Score=159.34  Aligned_cols=159  Identities=23%  Similarity=0.381  Sum_probs=132.1

Q ss_pred             CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccc-cccccCCCcccEEEcCCCceeecCCCCCCCC
Q psy8551          13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQ   91 (581)
Q Consensus        13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l   91 (581)
                      ....|.|..   .++.|  ++.+++.+|..+++++++|+|++|.+..+ +..+..+++|++|+|++|.++.++...|..+
T Consensus        13 ~~~~~~Cs~---~~v~c--~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l   87 (229)
T 3e6j_A           13 CPSQCSCSG---TTVDC--RSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL   87 (229)
T ss_dssp             CCTTCEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             CCCCCEEeC---CEeEc--cCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC
Confidence            344555554   46999  99999999999999999999999999987 4578899999999999999999998888999


Q ss_pred             CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551          92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG  171 (581)
Q Consensus        92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~  171 (581)
                      ++|++|++++|.                       ++.+++..|..+++|+.|++++|+++.++. .+..+++|++|+++
T Consensus        88 ~~L~~L~Ls~N~-----------------------l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~  143 (229)
T 3e6j_A           88 TQLTVLDLGTNQ-----------------------LTVLPSAVFDRLVHLKELFMCCNKLTELPR-GIERLTHLTHLALD  143 (229)
T ss_dssp             TTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCCSCCT-TGGGCTTCSEEECC
T ss_pred             CCcCEEECCCCc-----------------------CCccChhHhCcchhhCeEeccCCcccccCc-ccccCCCCCEEECC
Confidence            999999999886                       445556667888999999999998887765 56778888888888


Q ss_pred             CCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551         172 LNVFTTLADGAFNGLGRLSALDLRGAGLT  200 (581)
Q Consensus       172 ~n~~~~~~~~~l~~l~~L~~L~L~~~~l~  200 (581)
                      +|.++.+++..+..+++|+.|++.+|.+.
T Consensus       144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            88888777766777788888888777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.4e-18  Score=157.86  Aligned_cols=179  Identities=27%  Similarity=0.333  Sum_probs=134.7

Q ss_pred             ccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCccc
Q psy8551          47 IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR  126 (581)
Q Consensus        47 l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~  126 (581)
                      -+.++.+++.++.+|..+  .++|++|++++|+++.++...|..+++|++|++++|.                       
T Consensus         9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------------   63 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-----------------------   63 (208)
T ss_dssp             TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-----------------------
T ss_pred             CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-----------------------
Confidence            356778888888888654  4689999999999888887778888889999888875                       


Q ss_pred             ccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccc
Q psy8551         127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA  206 (581)
Q Consensus       127 l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~  206 (581)
                      ++.+++..|..+++|++|++++|.++.++...+..+++|++|++++|.++.+++..+..+++|+.|++++|.++.+.+..
T Consensus        64 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~  143 (208)
T 2o6s_A           64 LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV  143 (208)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence            34455555777888888888888888877766777888888888888888777766777788888888888777777666


Q ss_pred             cCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCC
Q psy8551         207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG  257 (581)
Q Consensus       207 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  257 (581)
                      +..+++|++|++++|.+.       ..+++|++|++..|.+++..+..++.
T Consensus       144 ~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~  187 (208)
T 2o6s_A          144 FDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGS  187 (208)
T ss_dssp             TTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSS
T ss_pred             hccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcc
Confidence            777777888888777433       34566777777777666555544443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.78  E-value=1.1e-18  Score=155.73  Aligned_cols=138  Identities=27%  Similarity=0.418  Sum_probs=119.4

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEP   90 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~   90 (581)
                      ++||..|.|..   ..+.|  ++..++.+|..+++++++|+|++|.++.+|..+.++++|++|++++|.|+.++...|.+
T Consensus         2 ~~CP~~C~C~~---~~l~~--~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~   76 (193)
T 2wfh_A            2 SRCPTECTCLD---TVVRC--SNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN   76 (193)
T ss_dssp             --CCTTCEEET---TEEEC--TTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCCCCCEeCC---CEEEc--CCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC
Confidence            57999999976   67899  99999999999999999999999999999999999999999999999999999888999


Q ss_pred             CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551          91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  170 (581)
Q Consensus        91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L  170 (581)
                      +++|++|++++|.                       ++.+.+..|.++++|+.|++++|.++.++...|..+++|++|++
T Consensus        77 l~~L~~L~Ls~N~-----------------------l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           77 MTQLLTLILSYNR-----------------------LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             CTTCCEEECCSSC-----------------------CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred             CCCCCEEECCCCc-----------------------cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEe
Confidence            9999999999875                       45566667888888888888888888887767777788888888


Q ss_pred             CCCcce
Q psy8551         171 GLNVFT  176 (581)
Q Consensus       171 ~~n~~~  176 (581)
                      ++|.+.
T Consensus       134 ~~N~~~  139 (193)
T 2wfh_A          134 GANPLY  139 (193)
T ss_dssp             CSSCEE
T ss_pred             CCCCee
Confidence            877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.77  E-value=3.3e-20  Score=185.84  Aligned_cols=267  Identities=18%  Similarity=0.146  Sum_probs=170.3

Q ss_pred             cccCCcccccccccCCCcccEEEcCCCceeecCC----CCCCCCCcccEEeCCCCCC--CCcccccccCCcccccccCcc
Q psy8551          52 LSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPI----GGFEPQEKLVELQLNHNKH--FPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        52 L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~----~~~~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      +....+..++..+..+++|++|+|++|.++....    ..+..+++|++|++++|.+  ++...+..             
T Consensus        16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~-------------   82 (386)
T 2ca6_A           16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEA-------------   82 (386)
T ss_dssp             CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHH-------------
T ss_pred             CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHH-------------
Confidence            3334445666678888999999999998885422    3477889999999998753  11111100             


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCccc----CCcccccCccCcEEECCCCcceeccCCc----CCCC---------CC
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSV----PTPSFIYLGMLAELRVGLNVFTTLADGA----FNGL---------GR  188 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~n~~~~~~~~~----l~~l---------~~  188 (581)
                       +..+ ..++..+++|++|++++|.+...    ....+..+++|++|++++|.++......    +..+         ++
T Consensus        83 -~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~  160 (386)
T 2ca6_A           83 -LRLL-LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPP  160 (386)
T ss_dssp             -HHHH-HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred             -HHHH-HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCC
Confidence             0111 23357889999999999988862    2235677889999999998876433222    2233         78


Q ss_pred             CcEEEcCCCCccccCc----cccCCCCCCcEEECCCCcCCc-----cCccccCCCCCCCEEECCCCcccccCCcccCCCc
Q psy8551         189 LSALDLRGAGLTNISD----NAFRGLSGLRSLVLTDNRLQS-----IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLS  259 (581)
Q Consensus       189 L~~L~L~~~~l~~~~~----~~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~  259 (581)
                      |++|++++|+++....    ..+..+++|++|++++|+++.     +.+..+..+++|++|++++|.++.....      
T Consensus       161 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~------  234 (386)
T 2ca6_A          161 LRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSS------  234 (386)
T ss_dssp             CCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHH------
T ss_pred             CcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHH------
Confidence            8888888887763322    245567788888888887772     2222566777888888888776421100      


Q ss_pred             ccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc----cccc--cCCCCCcEEecCCCCCcc-----ccccc
Q psy8551         260 YLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE----EGAL--VGLPNLYHLNLKENAFTS-----FSESM  328 (581)
Q Consensus       260 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~--~~~~~L~~L~l~~~~l~~-----~~~~~  328 (581)
                                    .+ +..+..+++|++|++++| .++...    ...+  ..+++|+.|++++|.++.     ++..+
T Consensus       235 --------------~l-~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          235 --------------AL-AIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             --------------HH-HHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             --------------HH-HHHHccCCCcCEEECCCC-CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence                          00 112334456666666666 344331    1133  337888888888888886     66666


Q ss_pred             -cCCCCcceEEccCCCCccCCc-hhhHHH
Q psy8551         329 -LAWPELRTIDIAENPIECGCN-ILWLRE  355 (581)
Q Consensus       329 -~~~~~L~~L~l~~~~~~~~~~-~~~l~~  355 (581)
                       ..+++|++|++++|++..... ...+..
T Consensus       299 ~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  327 (386)
T 2ca6_A          299 DEKMPDLLFLELNGNRFSEEDDVVDEIRE  327 (386)
T ss_dssp             HHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred             HhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence             457888899998888876654 344433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=169.18  Aligned_cols=227  Identities=17%  Similarity=0.159  Sum_probs=148.9

Q ss_pred             CccEEEcccCCccc--ccc--cccCCCcccEEEcCCCceeecCCCCC--CCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551          46 SIQRLVLSTNRIKT--VDS--AIPIYLSLQHVDLSHTTWLIIPIGGF--EPQEKLVELQLNHNKHFPQQIVCSIISPRRV  119 (581)
Q Consensus        46 ~l~~L~L~~~~i~~--l~~--~~~~~~~L~~L~ls~~~l~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  119 (581)
                      .++.+.+.+..+..  +..  .+..+++|++|++++|.++...+..+  ..+++|++|++++|.+...            
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~------------  132 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG------------  132 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST------------
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch------------
Confidence            56778888777652  111  12245668888888888886665566  7888888888888864110            


Q ss_pred             cccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCccee---ccC-CcCCCCCCCcEEEcC
Q psy8551         120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTT---LAD-GAFNGLGRLSALDLR  195 (581)
Q Consensus       120 ~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~---~~~-~~l~~l~~L~~L~L~  195 (581)
                             ...+....+..+++|++|++++|.+..++...+..+++|++|++++|.+.+   ++. ..+..+++|++|+++
T Consensus       133 -------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls  205 (310)
T 4glp_A          133 -------RSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR  205 (310)
T ss_dssp             -------TSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred             -------hhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence                   011122335567888888888888888877778888888888888887653   222 234677788888888


Q ss_pred             CCCccccCcc---ccCCCCCCcEEECCCCcCCccCccccCCC---CCCCEEECCCCcccccCCcccCCCcccceeeecCC
Q psy8551         196 GAGLTNISDN---AFRGLSGLRSLVLTDNRLQSIPTKQLSKL---TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       196 ~~~l~~~~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  269 (581)
                      +|+++.+...   .+..+++|++|++++|++++..+..+..+   ++|++|++++|.++.++...+              
T Consensus       206 ~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--------------  271 (310)
T 4glp_A          206 NTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--------------  271 (310)
T ss_dssp             SSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--------------
T ss_pred             CCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--------------
Confidence            8877644331   23566788888888888877633444444   578888888877764433211              


Q ss_pred             CCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc
Q psy8551         270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT  322 (581)
Q Consensus       270 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  322 (581)
                                    ++|++|++++| .+..++.  +..+++|+.|++++|.++
T Consensus       272 --------------~~L~~L~Ls~N-~l~~~~~--~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          272 --------------AKLRVLDLSSN-RLNRAPQ--PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             --------------SCCSCEECCSC-CCCSCCC--TTSCCCCSCEECSSTTTS
T ss_pred             --------------CCCCEEECCCC-cCCCCch--hhhCCCccEEECcCCCCC
Confidence                          35556666666 4554432  456677777777777665

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=6.1e-20  Score=182.01  Aligned_cols=254  Identities=17%  Similarity=0.188  Sum_probs=159.4

Q ss_pred             EEEcccCCcccc-cccccCCCcccEEEcCCCceeecCC----CCCCCCC-cccEEeCCCCCCCCcccccccCCccccccc
Q psy8551          49 RLVLSTNRIKTV-DSAIPIYLSLQHVDLSHTTWLIIPI----GGFEPQE-KLVELQLNHNKHFPQQIVCSIISPRRVEIF  122 (581)
Q Consensus        49 ~L~L~~~~i~~l-~~~~~~~~~L~~L~ls~~~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  122 (581)
                      +++|+.+.+... |..+...++|++|++++|.++..+.    ..+..++ +|++|++++|.+                  
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l------------------   63 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL------------------   63 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCG------------------
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCC------------------
Confidence            456777777754 3444455558888888888877665    5667777 788888888763                  


Q ss_pred             CcccccccchhhcCC-----CCCCcEEeCCCCcCcccCCccc----ccC-ccCcEEECCCCcceeccCCc----CCC-CC
Q psy8551         123 GQNRISRIDQACFEG-----LTALRILYLDDNQLRSVPTPSF----IYL-GMLAELRVGLNVFTTLADGA----FNG-LG  187 (581)
Q Consensus       123 ~~~~l~~~~~~~l~~-----~~~L~~L~l~~~~i~~~~~~~~----~~~-~~L~~L~L~~n~~~~~~~~~----l~~-l~  187 (581)
                           +...+..+..     .++|++|++++|.++......+    ..+ ++|++|++++|.++......    +.. .+
T Consensus        64 -----~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~  138 (362)
T 3goz_A           64 -----GFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA  138 (362)
T ss_dssp             -----GGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCT
T ss_pred             -----CHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCC
Confidence                 2222222322     2788888888888876665433    333 67888888888876554422    333 35


Q ss_pred             CCcEEEcCCCCccccCcccc----CCCC-CCcEEECCCCcCCccCcc----ccCCC-CCCCEEECCCCcccccCCcccCC
Q psy8551         188 RLSALDLRGAGLTNISDNAF----RGLS-GLRSLVLTDNRLQSIPTK----QLSKL-TRLEELEIGQNGFSMLEAGCFKG  257 (581)
Q Consensus       188 ~L~~L~L~~~~l~~~~~~~l----~~~~-~L~~L~l~~n~l~~~~~~----~~~~l-~~L~~L~l~~~~~~~~~~~~~~~  257 (581)
                      +|++|++++|.++......+    ...+ +|++|++++|+++.....    .+..+ ++|++|++++|.+.......+. 
T Consensus       139 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~-  217 (362)
T 3goz_A          139 SITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA-  217 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH-
T ss_pred             ceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH-
Confidence            78888888887775444332    3344 788888888877765543    23344 4788888888876642211110 


Q ss_pred             CcccceeeecCCCCceeecCccCCC-CCCCCEEeCCCCCCcccccc----ccccCCCCCcEEecCCCCCc--------cc
Q psy8551         258 LSYLKRLEITGASNLTRVRKGAFAD-NLNLETLTLNKNPKLKTIEE----GALVGLPNLYHLNLKENAFT--------SF  324 (581)
Q Consensus       258 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~--------~~  324 (581)
                                         . .+.. .++|++|++++| .++..+.    ..+..+++|+.|++++|.+.        .+
T Consensus       218 -------------------~-~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l  276 (362)
T 3goz_A          218 -------------------Y-IFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKAL  276 (362)
T ss_dssp             -------------------H-HHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred             -------------------H-HHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHH
Confidence                               0 1111 235666666666 4444332    23466778888888888733        34


Q ss_pred             cccccCCCCcceEEccCCCCccC
Q psy8551         325 SESMLAWPELRTIDIAENPIECG  347 (581)
Q Consensus       325 ~~~~~~~~~L~~L~l~~~~~~~~  347 (581)
                      +..+..+++|++|++++|++...
T Consensus       277 ~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          277 GAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHhccCCceEEEecCCCcCCCc
Confidence            44566778888899998887654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.77  E-value=4.7e-20  Score=182.80  Aligned_cols=202  Identities=16%  Similarity=0.168  Sum_probs=120.9

Q ss_pred             cCcccccccchhhcCCCCCCcEEeCCCCcCcccCC----cccccCc-cCcEEECCCCcceeccCCcCCCC-----CCCcE
Q psy8551         122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT----PSFIYLG-MLAELRVGLNVFTTLADGAFNGL-----GRLSA  191 (581)
Q Consensus       122 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~  191 (581)
                      ++.|.+++..+..+...++|++|++++|.++..+.    ..+..++ +|++|++++|.++......+..+     ++|+.
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~   84 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS   84 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence            34455666666656666668888888888887776    5666677 78888888888776544334332     77888


Q ss_pred             EEcCCCCccccCcccc----CCC-CCCcEEECCCCcCCccCccc----cCC-CCCCCEEECCCCcccccCCcccCCCccc
Q psy8551         192 LDLRGAGLTNISDNAF----RGL-SGLRSLVLTDNRLQSIPTKQ----LSK-LTRLEELEIGQNGFSMLEAGCFKGLSYL  261 (581)
Q Consensus       192 L~L~~~~l~~~~~~~l----~~~-~~L~~L~l~~n~l~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~L  261 (581)
                      |++++|.++...+..+    ..+ ++|++|++++|+++..+...    +.. .++|++|++++|.++......+.     
T Consensus        85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-----  159 (362)
T 3goz_A           85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI-----  159 (362)
T ss_dssp             EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH-----
T ss_pred             EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH-----
Confidence            8888887776665433    333 67777777777777655433    233 24777777777766543222110     


Q ss_pred             ceeeecCCCCceeecCccCCCC-CCCCEEeCCCCCCccccccc----cccCC-CCCcEEecCCCCCcc-----ccccccC
Q psy8551         262 KRLEITGASNLTRVRKGAFADN-LNLETLTLNKNPKLKTIEEG----ALVGL-PNLYHLNLKENAFTS-----FSESMLA  330 (581)
Q Consensus       262 ~~L~l~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~  330 (581)
                                      ..+... .+|++|++++| .++.....    .+..+ ++|+.|++++|.++.     ++..+..
T Consensus       160 ----------------~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~  222 (362)
T 3goz_A          160 ----------------QILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS  222 (362)
T ss_dssp             ----------------HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred             ----------------HHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence                            001111 25566666666 34433322    23334 367777777776664     4444443


Q ss_pred             -CCCcceEEccCCCCc
Q psy8551         331 -WPELRTIDIAENPIE  345 (581)
Q Consensus       331 -~~~L~~L~l~~~~~~  345 (581)
                       .++|++|++++|.+.
T Consensus       223 ~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          223 IPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             SCTTCCEEECCSSCCC
T ss_pred             CCCCceEEECcCCCCC
Confidence             246777777766554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=1.1e-18  Score=170.53  Aligned_cols=265  Identities=20%  Similarity=0.224  Sum_probs=149.2

Q ss_pred             CCCCcEEeCCCCcCc--ccCCcccccCccCcEEECCCCcceeccCCcCCC--------CCCCcEEEcCCCCccccCcccc
Q psy8551         138 LTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNG--------LGRLSALDLRGAGLTNISDNAF  207 (581)
Q Consensus       138 ~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~--------l~~L~~L~L~~~~l~~~~~~~l  207 (581)
                      +++|+.||+++|.+.  ......   .+.++.+.+..+   .++..+|.+        +++|+.+++++ .++.+...+|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF  120 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF  120 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred             hccCeEEecCcceeEEecCcccc---cccccccccccc---ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence            677888888887776  332211   222344444444   445555666        77777777777 6777777777


Q ss_pred             CCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcc----cccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551         208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGF----SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN  283 (581)
Q Consensus       208 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (581)
                      ..|++|+.|++.+|.+..++..+|..+.++..+.......    ..+....|.++..|+.                    
T Consensus       121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~--------------------  180 (329)
T 3sb4_A          121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET--------------------  180 (329)
T ss_dssp             TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE--------------------
T ss_pred             hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce--------------------
Confidence            7777777777777777777767776666665555544211    1122222323333330                    


Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccc-cCCCCcceEEccCCCCccCCchhhHHHHHhhcCC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCNILWLREMLVRRNT  362 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~  362 (581)
                          .+.+.....+.......-....++..+.+.++-...-...+ ..+++|+++++.+|.+                  
T Consensus       181 ----~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i------------------  238 (329)
T 3sb4_A          181 ----TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA------------------  238 (329)
T ss_dssp             ----EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC------------------
T ss_pred             ----eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc------------------
Confidence                22222111111110000112233444444433111111111 1246666666665543                  


Q ss_pred             CceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCc-EeecCCCcc
Q psy8551         363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE-ELEIGQNGF  441 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~-~L~l~~~~i  441 (581)
                                                     ..++..+|.+|++|+++++.+| +..++..+|..+++|+ .+++.+ .+
T Consensus       239 -------------------------------~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l  285 (329)
T 3sb4_A          239 -------------------------------TTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV  285 (329)
T ss_dssp             -------------------------------CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred             -------------------------------ceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence                                           3455566777777777777775 6667767777777777 777766 67


Q ss_pred             eeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeC
Q psy8551         442 SMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL  485 (581)
Q Consensus       442 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l  485 (581)
                      +.+...+|.+|++|+.+++.+ +.++.+...+|.++++|+.++.
T Consensus       286 ~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          286 TAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred             eEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence            777777777777777777765 5677777777777777777653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=7.8e-19  Score=170.11  Aligned_cols=197  Identities=18%  Similarity=0.144  Sum_probs=149.0

Q ss_pred             cCccEEEcccCCccc-ccccc--cCCCcccEEEcCCCceeecCC----CCCCCCCcccEEeCCCCCCCCcccccccCCcc
Q psy8551          45 PSIQRLVLSTNRIKT-VDSAI--PIYLSLQHVDLSHTTWLIIPI----GGFEPQEKLVELQLNHNKHFPQQIVCSIISPR  117 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~-l~~~~--~~~~~L~~L~ls~~~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~  117 (581)
                      +++++|+|++|.+.. .|..+  ..+++|++|++++|.++....    ..+..+++|++|++++|.              
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--------------  156 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--------------  156 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--------------
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--------------
Confidence            469999999999985 45566  899999999999999886322    234578999999999986              


Q ss_pred             cccccCcccccccchhhcCCCCCCcEEeCCCCcCcc---cCC-cccccCccCcEEECCCCcceeccCC---cCCCCCCCc
Q psy8551         118 RVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRS---VPT-PSFIYLGMLAELRVGLNVFTTLADG---AFNGLGRLS  190 (581)
Q Consensus       118 ~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~---~~~-~~~~~~~~L~~L~L~~n~~~~~~~~---~l~~l~~L~  190 (581)
                               ++.+.+..++.+++|++|++++|++..   ++. ..+..+++|++|++++|.++.++..   .+..+++|+
T Consensus       157 ---------l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~  227 (310)
T 4glp_A          157 ---------SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPH  227 (310)
T ss_dssp             ---------SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCS
T ss_pred             ---------cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCC
Confidence                     445556668888999999999998754   222 2346788899999999988754431   245778999


Q ss_pred             EEEcCCCCccccCccccCCC---CCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeec
Q psy8551         191 ALDLRGAGLTNISDNAFRGL---SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT  267 (581)
Q Consensus       191 ~L~L~~~~l~~~~~~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  267 (581)
                      +|++++|.++...+..+..+   ++|++|++++|+++.+|.. +  .++|++|++++|.++.++.  +..+++|+.|+++
T Consensus       228 ~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~-~--~~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~  302 (310)
T 4glp_A          228 SLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG-L--PAKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLD  302 (310)
T ss_dssp             SEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSC-C--CSCCSCEECCSCCCCSCCC--TTSCCCCSCEECS
T ss_pred             EEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhh-h--cCCCCEEECCCCcCCCCch--hhhCCCccEEECc
Confidence            99999999888755555555   6899999999999988743 3  2789999999998886533  4566667777766


Q ss_pred             CC
Q psy8551         268 GA  269 (581)
Q Consensus       268 ~~  269 (581)
                      +|
T Consensus       303 ~N  304 (310)
T 4glp_A          303 GN  304 (310)
T ss_dssp             ST
T ss_pred             CC
Confidence            65

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=4.4e-18  Score=162.77  Aligned_cols=171  Identities=23%  Similarity=0.338  Sum_probs=126.8

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      +++++|+++++.++.++. +..+++|++|++++|.++.++.  +..+++|++|++++|.+                    
T Consensus        46 ~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l--------------------  102 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV--------------------  102 (291)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred             CcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC--------------------
Confidence            678888888888877754 6777888888888888777764  77778888888887753                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.++  .+..+++|++|++++|.++.++  .+..+++|++|++++|.++++  ..+..+++|+.|++++|.++.+.+
T Consensus       103 ---~~~~--~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~  173 (291)
T 1h6t_A          103 ---KDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP  173 (291)
T ss_dssp             ---CCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ---CCCh--hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh
Confidence               2222  2677788888888888877763  567778888888888887766  247777888888888887777654


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  251 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~  251 (581)
                        +..+++|+.|++++|.++.++  .+..+++|+.|++++|.+...+
T Consensus       174 --l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~~~  216 (291)
T 1h6t_A          174 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKP  216 (291)
T ss_dssp             --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEECCC
T ss_pred             --hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccCCc
Confidence              677788888888888887765  3777788888888877766544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.76  E-value=1e-16  Score=159.65  Aligned_cols=261  Identities=16%  Similarity=0.294  Sum_probs=158.9

Q ss_pred             CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEE
Q psy8551         138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLV  217 (581)
Q Consensus       138 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  217 (581)
                      +..++.+.+.+ .++.++..+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|..|.+|+.++
T Consensus       112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            34555555553 3555555555553 4666665544 555555555553 466666654 45555555566666666666


Q ss_pred             CCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCc
Q psy8551         218 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKL  297 (581)
Q Consensus       218 l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  297 (581)
                      +..|.++.++..+|. +.+|+.+.+..+ +..+....|.++++|+.+.+..  +++.+...+|.+ .+|+.+.+.+  .+
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i  259 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GV  259 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TC
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--Cc
Confidence            666666666655555 356666666533 5555566666666666666654  355666666665 5666666644  35


Q ss_pred             cccccccccCCCCCcEEecCCCCCc-----cccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCC
Q psy8551         298 KTIEEGALVGLPNLYHLNLKENAFT-----SFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPA  371 (581)
Q Consensus       298 ~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  371 (581)
                      ..++..+|.++++|+.+++.++.+.     .++. .|..+++|+.+.+..+                             
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-----------------------------  310 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-----------------------------  310 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-----------------------------
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-----------------------------
Confidence            6666666666677777766665543     3332 5556667776666532                             


Q ss_pred             cccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccC
Q psy8551         372 PLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG  451 (581)
Q Consensus       372 ~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~  451 (581)
                                           +..+...+|.+|++|+.+.+.. .++.+...+|..+ +|+.+.+.++....+....|.+
T Consensus       311 ---------------------i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~  367 (401)
T 4fdw_A          311 ---------------------IRILGQGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYG  367 (401)
T ss_dssp             ---------------------CCEECTTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCC
T ss_pred             ---------------------eEEEhhhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcCCCCcccccccccC
Confidence                                 2345566777777777777754 3666666777777 7888888777777776667766


Q ss_pred             Cc-cccEEeecC
Q psy8551         452 LS-YLKRLEITG  462 (581)
Q Consensus       452 ~~-~L~~L~l~~  462 (581)
                      ++ .++.|++..
T Consensus       368 ~~~~l~~l~vp~  379 (401)
T 4fdw_A          368 FPDDITVIRVPA  379 (401)
T ss_dssp             SCTTCCEEEECG
T ss_pred             CCCCccEEEeCH
Confidence            64 577777754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.76  E-value=1.4e-16  Score=158.67  Aligned_cols=270  Identities=16%  Similarity=0.250  Sum_probs=225.9

Q ss_pred             cccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCC
Q psy8551         159 FIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLE  238 (581)
Q Consensus       159 ~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  238 (581)
                      +..+..++.+.+.. .++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .++.+...+|..|++|+
T Consensus       109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            34567888888876 4778888888885 7999999876 888888888885 799999987 78889888999999999


Q ss_pred             EEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCC
Q psy8551         239 ELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE  318 (581)
Q Consensus       239 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~  318 (581)
                      .+++..|.++.++...|. ...|+.+.+..  .++.+...+|.++.+|+.+.+..+  +..++..+|.+ .+|+.+.+ .
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~l-p  256 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKL-P  256 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEE-E
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEe-C
Confidence            999999999999988887 58999999974  588999999999999999999975  78888888888 78999999 4


Q ss_pred             CCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccC
Q psy8551         319 NAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNIS  397 (581)
Q Consensus       319 ~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~  397 (581)
                      +.++.++. +|..+++|+.+.+.++...                                            ......+.
T Consensus       257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~--------------------------------------------~~~~~~I~  292 (401)
T 4fdw_A          257 NGVTNIASRAFYYCPELAEVTTYGSTFN--------------------------------------------DDPEAMIH  292 (401)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEESSCCC--------------------------------------------CCTTCEEC
T ss_pred             CCccEEChhHhhCCCCCCEEEeCCcccc--------------------------------------------CCcccEEC
Confidence            55776654 7778999999999887542                                            01123567


Q ss_pred             ccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCC
Q psy8551         398 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN  477 (581)
Q Consensus       398 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  477 (581)
                      ...|.+|++|+.+.+. +.++.+....|.+|++|+.+.|..+ ++.+...+|.++ +|+.+++.++ ....+....|.++
T Consensus       293 ~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~~  368 (401)
T 4fdw_A          293 PYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYGF  368 (401)
T ss_dssp             TTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCCS
T ss_pred             HHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccCC
Confidence            7889999999999999 4688888889999999999999654 888899999999 9999999984 6667777788887


Q ss_pred             C-CCCeeeCCCC
Q psy8551         478 L-NLETLTLNKN  488 (581)
Q Consensus       478 ~-~L~~L~l~~~  488 (581)
                      + +++.|++..+
T Consensus       369 ~~~l~~l~vp~~  380 (401)
T 4fdw_A          369 PDDITVIRVPAE  380 (401)
T ss_dssp             CTTCCEEEECGG
T ss_pred             CCCccEEEeCHH
Confidence            4 7889998876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=2.2e-19  Score=176.50  Aligned_cols=57  Identities=14%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             CCcEEEcCCCCccccCccccCCC--CCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccc
Q psy8551         188 RLSALDLRGAGLTNISDNAFRGL--SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS  248 (581)
Q Consensus       188 ~L~~L~L~~~~l~~~~~~~l~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~  248 (581)
                      .++.++++++.+.   +..+..+  ++++.|++++|.+.+.++. +..+++|++|++++|.+.
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~  106 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE  106 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC
Confidence            3667777766554   2233434  5677777777766665533 445666777777666554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.75  E-value=1.7e-18  Score=169.07  Aligned_cols=260  Identities=17%  Similarity=0.171  Sum_probs=161.6

Q ss_pred             CcCccEEEcccCCcc-cccccccC-CCcccEEEcCCCcee--ecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551          44 NPSIQRLVLSTNRIK-TVDSAIPI-YLSLQHVDLSHTTWL--IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRV  119 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~-~l~~~~~~-~~~L~~L~ls~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  119 (581)
                      .+++++|.++++--. ++ ..+.. +++|++|||++|++.  ......+   +.++.+.+..+                 
T Consensus        24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~-----------------   82 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN-----------------   82 (329)
T ss_dssp             HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT-----------------
T ss_pred             hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc-----------------
Confidence            357888888865211 11 12333 778888888888877  3332222   22334444433                 


Q ss_pred             cccCcccccccchhhcCC--------CCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcE
Q psy8551         120 EIFGQNRISRIDQACFEG--------LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSA  191 (581)
Q Consensus       120 ~~l~~~~l~~~~~~~l~~--------~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~  191 (581)
                               .++..+|.+        |++|+.+++++ .++.++..+|.+|++|+.++++.|.+..+.+.+|.++.++..
T Consensus        83 ---------~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~  152 (329)
T 3sb4_A           83 ---------FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIF  152 (329)
T ss_dssp             ---------EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEE
T ss_pred             ---------ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEE
Confidence                     233344445        67777777776 666666666777777777777777666666666666666665


Q ss_pred             EEcCCCC----ccccCccccCCCCCCc--------------------------EEECCCCcCCccCcccc-CCCCCCCEE
Q psy8551         192 LDLRGAG----LTNISDNAFRGLSGLR--------------------------SLVLTDNRLQSIPTKQL-SKLTRLEEL  240 (581)
Q Consensus       192 L~L~~~~----l~~~~~~~l~~~~~L~--------------------------~L~l~~n~l~~~~~~~~-~~l~~L~~L  240 (581)
                      +.+....    ...+....|..+..|+                          .+.+.++ +.......+ ..+++|+++
T Consensus       153 l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l  231 (329)
T 3sb4_A          153 IPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSL  231 (329)
T ss_dssp             ECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEE
T ss_pred             ecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEE
Confidence            5554421    1122222333334443                          2222221 110000011 126778888


Q ss_pred             ECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCC-EEeCCCCCCccccccccccCCCCCcEEecCCC
Q psy8551         241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLE-TLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN  319 (581)
Q Consensus       241 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~  319 (581)
                      ++++|.++.++...|.++.+|+.+.+.++  ++.++..+|.++.+|+ .+.+++  .+..++..+|.++++|+.+++.++
T Consensus       232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          232 DISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             ECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSS
T ss_pred             ECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCC
Confidence            88888888888888888888888888764  7778888888888888 888877  477777778888888888888888


Q ss_pred             CCccccc-cccCCCCcceEEc
Q psy8551         320 AFTSFSE-SMLAWPELRTIDI  339 (581)
Q Consensus       320 ~l~~~~~-~~~~~~~L~~L~l  339 (581)
                      .++.+++ .|..+++|+.+..
T Consensus       308 ~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          308 KITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             CCCEECTTTTCTTCCCCEEEC
T ss_pred             ccCccchhhhcCCcchhhhcc
Confidence            8887765 6667778887754

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.74  E-value=3.7e-16  Score=156.54  Aligned_cols=322  Identities=18%  Similarity=0.287  Sum_probs=198.1

Q ss_pred             ccccchhhcCCCC-CCcEEeCCCCcCcccCCcccccCccCcEEECCCCc---ceeccCCcCCCCCCCcEEEcCCCCcccc
Q psy8551         127 ISRIDQACFEGLT-ALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV---FTTLADGAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       127 l~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~---~~~~~~~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                      ++.+...+|.+++ .|+.+.+.. .++.+...+|.+|.+|+.+.+..+.   ++.+...+|..+.+|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            5566677777764 477777764 3667777777777777777776542   55555566666666666555432 4444


Q ss_pred             CccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCC
Q psy8551         203 SDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFAD  282 (581)
Q Consensus       203 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~  282 (581)
                      ....|..+.+|+.+.+..+ +..+....+..+..|+.+.+..+                          +..+...+|..
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--------------------------~~~I~~~aF~~  181 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS--------------------------VTAIEERAFTG  181 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT--------------------------CCEECTTTTTT
T ss_pred             hhhhhhhhcccccccccce-eeeecccceecccccccccccce--------------------------eeEeccccccc
Confidence            4445555555665555432 44444445555555555555432                          33333333332


Q ss_pred             CCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccC--------------CCCcceEEccCCCCccCC
Q psy8551         283 NLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA--------------WPELRTIDIAENPIECGC  348 (581)
Q Consensus       283 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--------------~~~L~~L~l~~~~~~~~~  348 (581)
                       ..|+.+.+...  ...+...+|..+..+................+..              ...+..+.+         
T Consensus       182 -~~l~~i~ip~~--~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i---------  249 (394)
T 4gt6_A          182 -TALTQIHIPAK--VTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKI---------  249 (394)
T ss_dssp             -CCCSEEEECTT--CCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEEC---------
T ss_pred             -cceeEEEECCc--ccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEc---------
Confidence             23444444432  3334444455555555554443333222211111              011111111         


Q ss_pred             chhhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCC
Q psy8551         349 NILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL  428 (581)
Q Consensus       349 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l  428 (581)
                                                               ...+..+...+|.+|..|+.+.+..+ +..+....|..+
T Consensus       250 -----------------------------------------p~~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c  287 (394)
T 4gt6_A          250 -----------------------------------------PNGVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNC  287 (394)
T ss_dssp             -----------------------------------------CTTEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTC
T ss_pred             -----------------------------------------CCcceEcccceeeecccccEEecccc-cceecCcccccc
Confidence                                                     12345667788999999999999764 445666788999


Q ss_pred             CCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEE
Q psy8551         429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHL  508 (581)
Q Consensus       429 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L  508 (581)
                      +.|+.+.+. +.++.++..+|.+|++|+.+.+..  .++.+...+|.+|.+|+++.+..+  ++.++..+|.+|++|+.+
T Consensus       288 ~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i  362 (394)
T 4gt6_A          288 PALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNI  362 (394)
T ss_dssp             TTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEE
T ss_pred             cccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEE
Confidence            999999996 568888889999999999999974  588999999999999999999754  778888899999999999


Q ss_pred             EcCCCcceeeccccccCCcceEEecCCCcc
Q psy8551         509 NLKENAFTSFSESMLAWPELRTIDIAENPI  538 (581)
Q Consensus       509 ~l~~n~l~~l~~~~~~~~~L~~L~l~~np~  538 (581)
                      ++.++....  ..+..+..|+.+.+..+.+
T Consensus       363 ~~~~~~~~~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          363 EYSGSRSQW--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EESSCHHHH--HTCBCCCCC----------
T ss_pred             EECCceeeh--hhhhccCCCCEEEeCCCCE
Confidence            999876432  3566788888888876543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.74  E-value=8.4e-18  Score=150.18  Aligned_cols=137  Identities=28%  Similarity=0.365  Sum_probs=109.2

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc--cccCCCcccEEEcCCCceeecCCCCCC
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS--AIPIYLSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~--~~~~~~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      +||..|.|..   +.+.|  ++.+++.+|..+++++++|+|++|.++.++.  .+..+++|++|++++|.++.+.+..|.
T Consensus         1 ~CP~~C~C~~---~~l~~--s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~   75 (192)
T 1w8a_A            1 DCPAMCHCEG---TTVDC--TGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE   75 (192)
T ss_dssp             CCCTTSEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT
T ss_pred             CcCCCCEECC---CEEEc--CCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC
Confidence            5999999986   67899  9999999999999999999999999998876  388999999999999999888777888


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELR  169 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~  169 (581)
                      .+++|++|++++|.                       ++.+.+..|.++++|++|++++|.++.+.+..+..+++|++|+
T Consensus        76 ~l~~L~~L~Ls~N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           76 GASHIQELQLGENK-----------------------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             TCTTCCEEECCSCC-----------------------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CcccCCEEECCCCc-----------------------CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            88888888888875                       3444555566677777777777777766555666666666666


Q ss_pred             CCCCcce
Q psy8551         170 VGLNVFT  176 (581)
Q Consensus       170 L~~n~~~  176 (581)
                      +++|.+.
T Consensus       133 L~~N~l~  139 (192)
T 1w8a_A          133 LASNPFN  139 (192)
T ss_dssp             CTTCCBC
T ss_pred             eCCCCcc
Confidence            6666554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=4.4e-17  Score=168.79  Aligned_cols=179  Identities=18%  Similarity=0.213  Sum_probs=93.1

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccc--ccC
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVE--IFG  123 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~--~l~  123 (581)
                      ++++|+|++|.++.+|..+  +++|++|++++|.++.++    ..+++|++|++++|.+..  ++. +..  .|+  +++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP----ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCC--cch-hhc--CCCEEECC
Confidence            4555555555555555433  245555555555555444    223455555555554310  000 000  111  222


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                      .|.++.++.    .+++|+.|++++|.++.++.    .+++|++|++++|.+++++.  +.  ++|+.|++++|.++.++
T Consensus       129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          129 NNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             SSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred             CCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence            223333333    35666666666666666554    35666666666666666544  33  66666666666666554


Q ss_pred             ccccCCCCCC-------cEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCC
Q psy8551         204 DNAFRGLSGL-------RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA  252 (581)
Q Consensus       204 ~~~l~~~~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  252 (581)
                      .  +..  +|       +.|++++|+++.+|. .+..+++|+.|++++|.++...+
T Consensus       197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp~-~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          197 A--VPV--RNHHSEETEIFFRCRENRITHIPE-NILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             C--CC----------CCEEEECCSSCCCCCCG-GGGGSCTTEEEECCSSSCCHHHH
T ss_pred             h--HHH--hhhcccccceEEecCCCcceecCH-HHhcCCCCCEEEeeCCcCCCcCH
Confidence            4  332  44       666666666666663 34446666666666666655443

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=1.3e-17  Score=159.53  Aligned_cols=186  Identities=25%  Similarity=0.345  Sum_probs=151.4

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      .+..+.+....+.++.. +..+++|++|++++|.++.++  .+..+++|++|++++|.+                     
T Consensus        25 ~~~~~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~--~~~~l~~L~~L~L~~n~l---------------------   80 (291)
T 1h6t_A           25 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL---------------------   80 (291)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCC---------------------
T ss_pred             HHHHHHhcCCCcccccc-hhhcCcccEEEccCCCcccCh--hHhcCCCCCEEEccCCcc---------------------
Confidence            44555667777766532 457889999999999998886  488899999999999863                     


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcc
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDN  205 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  205 (581)
                        +++.+  +.++++|+.|++++|.++.++  .+..+++|++|++++|.++.+.  .+..+++|+.|++++|.++.+  .
T Consensus        81 --~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~i~~~~--~l~~l~~L~~L~l~~n~l~~~--~  150 (291)
T 1h6t_A           81 --TDIKP--LANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--T  150 (291)
T ss_dssp             --CCCGG--GTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCC--G
T ss_pred             --CCCcc--cccCCCCCEEECCCCcCCCCh--hhccCCCCCEEECCCCcCCCCh--hhcCCCCCCEEEccCCcCCcc--h
Confidence              33433  788999999999999998865  4888999999999999988764  478889999999999998877  3


Q ss_pred             ccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCC
Q psy8551         206 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       206 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  269 (581)
                      .+..+++|+.|++++|+++++++  +..+++|++|++++|.++.++.  +..+++|+.|++++|
T Consensus       151 ~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          151 VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG--GTTCTTCSEEEEEEE
T ss_pred             hhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCChh--hccCCCCCEEECcCC
Confidence            67888999999999999998874  8889999999999998887643  677777777777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.72  E-value=8.1e-17  Score=142.00  Aligned_cols=153  Identities=24%  Similarity=0.408  Sum_probs=128.6

Q ss_pred             CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551         407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN  486 (581)
Q Consensus       407 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~  486 (581)
                      .+.+++++++++.++..   ..++|++|++++|.+++..+..+..+++|++|++++ +.++.+.+..|..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHccCCCccCEEECC
Confidence            56788888888877732   336888999999988888877788889999999988 46777777778899999999999


Q ss_pred             CCCCceeecCCccCCCCCccEEEcCCCcceeecccc-ccCCcceEEecCCCcccccCc-hhHHHHHHhhcCC---Cceee
Q psy8551         487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM-LAWPELRTIDIAENPIECGCN-ILWLREMLVRRNT---SAVFC  561 (581)
Q Consensus       487 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~-~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~~~---~~~~c  561 (581)
                      +| .++.+++..+..+++|++|++++|.++.++... ..+++|++|++++||+.|+|+ +.|+..|......   ....|
T Consensus        85 ~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~~~~~~~~~~~~~C  163 (177)
T 2o6r_A           85 EN-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSAKC  163 (177)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHHHHHHHHTGGGEESCCBB
T ss_pred             CC-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHHHHHHHhhCccccccCcEe
Confidence            99 788888888899999999999999999988764 679999999999999999998 8899999877533   44567


Q ss_pred             CCC
Q psy8551         562 NSP  564 (581)
Q Consensus       562 ~~~  564 (581)
                      +.+
T Consensus       164 ~~~  166 (177)
T 2o6r_A          164 SGS  166 (177)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=5.4e-17  Score=170.07  Aligned_cols=179  Identities=23%  Similarity=0.317  Sum_probs=149.5

Q ss_pred             CcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      .++|++|+++++.+..++ .+..+++|++|+|++|.++.+++  +..+++|++|+|++|.+                   
T Consensus        42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l-------------------   99 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI-------------------   99 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC-------------------
T ss_pred             CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC-------------------
Confidence            378999999999999887 48889999999999999988875  88899999999999864                   


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                          ..++  .+..+++|+.|++++|.+..++  .+..+++|+.|+|++|.+..+  ..+..+++|+.|+|++|.+..+.
T Consensus       100 ----~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~  169 (605)
T 1m9s_A          100 ----KDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV  169 (605)
T ss_dssp             ----CCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred             ----CCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence                2222  3778899999999999998864  588899999999999998887  35888999999999999998876


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL  258 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~  258 (581)
                      +  +..+++|+.|+|++|+++.++  .+..+++|+.|++++|.+...+...+..+
T Consensus       170 ~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~l~~~p~~~~~~l  220 (605)
T 1m9s_A          170 P--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLNKPINHQSNL  220 (605)
T ss_dssp             G--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred             h--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCcCcCCcccccccE
Confidence            6  888999999999999999875  48889999999999998887655444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=2.6e-18  Score=172.03  Aligned_cols=119  Identities=23%  Similarity=0.354  Sum_probs=67.6

Q ss_pred             CCCCCCCEEeCCCCCCccc-----cccccccCCCCCcEEecCCCCC-----ccccccccCCCCcceEEccCCCCccCCch
Q psy8551         281 ADNLNLETLTLNKNPKLKT-----IEEGALVGLPNLYHLNLKENAF-----TSFSESMLAWPELRTIDIAENPIECGCNI  350 (581)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~  350 (581)
                      ..+++|++|++++| .++.     +....+..+++|+.|++++|.+     ..++..+..+++|++|++++|.+......
T Consensus       184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~  262 (386)
T 2ca6_A          184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  262 (386)
T ss_dssp             HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence            34456666666666 3331     1122456667777777777776     34555666677777777777765421000


Q ss_pred             hhHHHHHhhcCCCceeecCCCcccccccccCCccccccCCCCccccCcccc--CCCCCCCEEEcCCCcCCc----cChhh
Q psy8551         351 LWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAF--RGLSGLRSLVLTDNRLQS----IPTKQ  424 (581)
Q Consensus       351 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~--~~~~~L~~L~l~~n~l~~----~~~~~  424 (581)
                      .                                            + ...+  ..+++|+.|++++|.++.    ..+..
T Consensus       263 ~--------------------------------------------l-~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~  297 (386)
T 2ca6_A          263 A--------------------------------------------V-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTV  297 (386)
T ss_dssp             H--------------------------------------------H-HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH
T ss_pred             H--------------------------------------------H-HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHH
Confidence            0                                            0 0112  225677777777777766    12233


Q ss_pred             h-cCCCCCcEeecCCCcceeec
Q psy8551         425 L-SKLTRLEELEIGQNGFSMLE  445 (581)
Q Consensus       425 l-~~l~~L~~L~l~~~~i~~~~  445 (581)
                      + .++++|++|++++|.+++..
T Consensus       298 l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          298 IDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHhcCCCceEEEccCCcCCcch
Confidence            3 55677777777777776544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.71  E-value=5.5e-17  Score=143.09  Aligned_cols=136  Identities=29%  Similarity=0.426  Sum_probs=110.8

Q ss_pred             CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCC
Q psy8551          13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQ   91 (581)
Q Consensus        13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l   91 (581)
                      ||..|+|..   +.+.|  .+.+++.+|..+++++++|++++|+++.++. .+..+++|++|++++|.++.++...|..+
T Consensus         1 Cp~~C~C~~---~~l~~--~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l   75 (177)
T 2o6r_A            1 CPSRCSCSG---TEIRC--NSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKL   75 (177)
T ss_dssp             CCTTCEEET---TEEEC--CSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CcCCCEeCC---CEEEe--cCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCC
Confidence            899999965   67899  9999999999999999999999999998875 56889999999999999998887778888


Q ss_pred             CcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECC
Q psy8551          92 EKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVG  171 (581)
Q Consensus        92 ~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~  171 (581)
                      ++|++|++++|.                       ++.+++..+..+++|++|++++|.++.++...+..+++|++|+++
T Consensus        76 ~~L~~L~l~~N~-----------------------l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~  132 (177)
T 2o6r_A           76 TKLTILYLHENK-----------------------LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  132 (177)
T ss_dssp             TTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             CccCEEECCCCC-----------------------ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence            888888888875                       344445556777788888888887777776566667777777777


Q ss_pred             CCcce
Q psy8551         172 LNVFT  176 (581)
Q Consensus       172 ~n~~~  176 (581)
                      +|.+.
T Consensus       133 ~N~~~  137 (177)
T 2o6r_A          133 TNPWD  137 (177)
T ss_dssp             SSCBC
T ss_pred             CCCee
Confidence            77654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.71  E-value=1.9e-15  Score=151.35  Aligned_cols=314  Identities=15%  Similarity=0.298  Sum_probs=204.7

Q ss_pred             ccccccchhhcCCCCCCcEEeCCCC---cCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDN---QLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN  201 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~---~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~  201 (581)
                      +.++.+...+|.+|.+|+.+.+..+   .++.+...+|..+.+|+.+.+..+ ++.+...+|..+.+|+.+.+.. .+..
T Consensus        73 ~svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~-~~~~  150 (394)
T 4gt6_A           73 DTVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPE-GVTS  150 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCT-TCCE
T ss_pred             CCeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccc-eeee
Confidence            4578889999999999999999865   377888889999999999988764 6778888899999999999975 4566


Q ss_pred             cCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCC
Q psy8551         202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA  281 (581)
Q Consensus       202 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~  281 (581)
                      +....|..+..|+.+.+..+ ++.+...+|.. .+|+.+.+..+ +..+....|..+..++........ ........+.
T Consensus       151 I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~~~~~-~~~~~~~~~~  226 (394)
T 4gt6_A          151 VADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAK-VTRIGTNAFSECFALSTITSDSES-YPAIDNVLYE  226 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTT-CCEECTTTTTTCTTCCEEEECCSS-SCBSSSCEEE
T ss_pred             ecccceecccccccccccce-eeEeccccccc-cceeEEEECCc-ccccccchhhhccccceecccccc-cccccceeec
Confidence            77778999999999999875 77777777765 57999988764 455566667777777766654321 1111110000


Q ss_pred             CCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhhc
Q psy8551         282 DNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRR  360 (581)
Q Consensus       282 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~  360 (581)
                      .           + .........+.....+..+.+.. .++.+. .+|..+..|+.+.+..+                  
T Consensus       227 ~-----------~-~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~------------------  275 (394)
T 4gt6_A          227 K-----------S-ANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDS------------------  275 (394)
T ss_dssp             E-----------C-TTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTT------------------
T ss_pred             c-----------c-ccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccc------------------
Confidence            0           0 00000000111222233333322 222222 24455566666666442                  


Q ss_pred             CCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCc
Q psy8551         361 NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNG  440 (581)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~  440 (581)
                                                      +..+....|.+|+.|+.+.+. +.++.++...|..|++|+++.|..+ 
T Consensus       276 --------------------------------~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-  321 (394)
T 4gt6_A          276 --------------------------------VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-  321 (394)
T ss_dssp             --------------------------------CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred             --------------------------------cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-
Confidence                                            223455667777888888885 3566677777888888888888653 


Q ss_pred             ceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcc
Q psy8551         441 FSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAF  515 (581)
Q Consensus       441 i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l  515 (581)
                      ++.+...+|.+|++|+++.+..  .++.+...+|.+|.+|+.+++.++ ... +  ..+..+.+|+.+.+..+.+
T Consensus       322 v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~-~~~-~--~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          322 ITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS-RSQ-W--NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC-HHH-H--HTCBCCCCC----------
T ss_pred             ccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc-eee-h--hhhhccCCCCEEEeCCCCE
Confidence            7777778888888888888853  477788888888888888888876 222 2  3466778888888776543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.71  E-value=2.4e-16  Score=163.24  Aligned_cols=181  Identities=21%  Similarity=0.225  Sum_probs=137.6

Q ss_pred             cccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCC
Q psy8551          69 SLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD  148 (581)
Q Consensus        69 ~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~  148 (581)
                      +|++|++++|.++.+|...+   ++|++|++++|.+                       +.++    ..+++|+.|++++
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~---~~L~~L~Ls~N~l-----------------------~~ip----~~l~~L~~L~Ls~  109 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP---PQITVLEITQNAL-----------------------ISLP----ELPASLEYLDACD  109 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC---TTCSEEECCSSCC-----------------------SCCC----CCCTTCCEEECCS
T ss_pred             CccEEEeCCCCCCccCHhHc---CCCCEEECcCCCC-----------------------cccc----cccCCCCEEEccC
Confidence            89999999999999886543   7899999999874                       2233    2368888999999


Q ss_pred             CcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc
Q psy8551         149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT  228 (581)
Q Consensus       149 ~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  228 (581)
                      |.++.++.  +..  +|++|++++|.+++++.    .+++|+.|++++|.++.++.    .+++|+.|++++|+++.++.
T Consensus       110 N~l~~ip~--l~~--~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~  177 (571)
T 3cvr_A          110 NRLSTLPE--LPA--SLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE  177 (571)
T ss_dssp             SCCSCCCC--CCT--TCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             CCCCCcch--hhc--CCCEEECCCCcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch
Confidence            98888765  443  88899999988888655    57889999999988887654    46788999999998888775


Q ss_pred             cccCCCCCCCEEECCCCcccccCCcccCCCccc-------ceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccc
Q psy8551         229 KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYL-------KRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIE  301 (581)
Q Consensus       229 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  301 (581)
                        +.  ++|+.|++++|.++.++.  +..  +|       +.|++++| .++.++.. +..+++|+.|++++|...+.++
T Consensus       178 --l~--~~L~~L~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~lp~~-l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          178 --LP--ESLEALDVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITHIPEN-ILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             --CC--TTCCEEECCSSCCSSCCC--CC----------CCEEEECCSS-CCCCCCGG-GGGSCTTEEEECCSSSCCHHHH
T ss_pred             --hh--CCCCEEECcCCCCCchhh--HHH--hhhcccccceEEecCCC-cceecCHH-HhcCCCCCEEEeeCCcCCCcCH
Confidence              54  789999999998886665  433  66       88888886 56666554 3448889999999995444433

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1.2e-17  Score=157.11  Aligned_cols=171  Identities=20%  Similarity=0.251  Sum_probs=141.1

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .++..++++++.+++++ .+..+++|++|++++|.++.++  .+..+++|++|++++|.                     
T Consensus        19 ~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~---------------------   74 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQ---------------------   74 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSC---------------------
T ss_pred             HHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCc---------------------
Confidence            56778888999998887 5778899999999999998877  58888999999999886                     


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                        ++++++  ++++++|+.|++++|.++.++.  +.. ++|++|++++|.+++++  .+..+++|+.|++++|+++.+. 
T Consensus        75 --i~~~~~--l~~l~~L~~L~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-  144 (263)
T 1xeu_A           75 --ISDLSP--LKDLTKLEELSVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-  144 (263)
T ss_dssp             --CCCCGG--GTTCSSCCEEECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-
T ss_pred             --cCCChh--hccCCCCCEEECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-
Confidence              334444  7788999999999999988765  233 88999999999988864  4888899999999999888774 


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEA  252 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  252 (581)
                       .+..+++|+.|++++|+++++  ..+..+++|+.|++++|.+...+.
T Consensus       145 -~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          145 -MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             -GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             -HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence             577888999999999999887  458888999999999988776543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.69  E-value=1.5e-16  Score=138.82  Aligned_cols=141  Identities=21%  Similarity=0.386  Sum_probs=104.7

Q ss_pred             CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCC
Q psy8551         407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN  486 (581)
Q Consensus       407 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~  486 (581)
                      .+.++++++.++.++.. +  .++|++|++++|.+++                         +.+..|.++++|++|+++
T Consensus        11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~-------------------------~~~~~~~~l~~L~~L~Ls   62 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITK-------------------------LEPGVFDRLTQLTRLDLD   62 (170)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCC-------------------------CCTTTTTTCTTCSEEECC
T ss_pred             CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCc-------------------------cChhhhcCcccCCEEECC
Confidence            45666666666655521 1  2455555555555444                         444556667778888888


Q ss_pred             CCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhc----------
Q psy8551         487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRR----------  554 (581)
Q Consensus       487 ~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~----------  554 (581)
                      +| .+..+++..|.++++|++|++++|+|+.++.. +..+++|++|++++||+.|+|. +.|+.+|++..          
T Consensus        63 ~N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l~~~l~~~~~~~~~~~~~  141 (170)
T 3g39_A           63 NN-QLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYLSRWISQHPGLVFGYLNL  141 (170)
T ss_dssp             SS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHHHHHHHHCGGGEECSSSB
T ss_pred             CC-CcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHHHHHHHhCcceeeccccC
Confidence            88 78888888889999999999999999998864 7789999999999999999995 99999999874          


Q ss_pred             CCCceeeCCCcccccccccccCcccc
Q psy8551         555 NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       555 ~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      .+..+.|+.+    |.++.++++++.
T Consensus       142 ~~~~~~C~~~----~~~~~~~~~~~~  163 (170)
T 3g39_A          142 DPDSARCSGT----NTPVRAVTEAST  163 (170)
T ss_dssp             CGGGSBBCC-----CCBGGGCCSTTC
T ss_pred             CcccceeCCC----Cccchhcccccc
Confidence            2334568765    688888887653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=6.7e-17  Score=169.41  Aligned_cols=188  Identities=24%  Similarity=0.340  Sum_probs=160.8

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      ..+..+.+..+.+.++.. +..+++|+.|++++|.+..++  .+..+++|++|+|++|.+                    
T Consensus        21 ~~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l--------------------   77 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKL--------------------   77 (605)
T ss_dssp             HHHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCC--------------------
T ss_pred             HHHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCC--------------------
Confidence            456667777777776644 568899999999999999887  588999999999999863                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.+.+  +..+++|+.|++++|.+..++  .+..+++|+.|+|++|.+..++  .+..+++|+.|+|++|.++.+  
T Consensus        78 ---~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~Ls~N~l~~l--  146 (605)
T 1m9s_A           78 ---TDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDI--  146 (605)
T ss_dssp             ---CCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEECTTSCCCCCG--GGGGCTTCSEEECCSSCCCCC--
T ss_pred             ---CCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEecCCCCCCCc--cccCCCccCEEECCCCccCCc--
Confidence               33333  778999999999999999876  5888999999999999998864  488999999999999999987  


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS  270 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  270 (581)
                      ..+..+++|+.|+|++|.++.+++  +..+++|++|++++|.+..++  .+..+++|+.|++.+|.
T Consensus       147 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          147 TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQE  208 (605)
T ss_dssp             GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEECCSEE
T ss_pred             hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCCh--HHccCCCCCEEEccCCc
Confidence            468899999999999999998875  889999999999999998863  47889999999999863

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=9e-17  Score=144.33  Aligned_cols=154  Identities=19%  Similarity=0.240  Sum_probs=106.0

Q ss_pred             cCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEE
Q psy8551          65 PIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRIL  144 (581)
Q Consensus        65 ~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L  144 (581)
                      ..+++|++|++++|.++.++  .+..+++|++|++++|.+                       +.+  ..+..+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~-----------------------~~~--~~l~~l~~L~~L   93 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHA-----------------------TNY--NPISGLSNLERL   93 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCC-----------------------SCC--GGGTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCC-----------------------Ccc--hhhhcCCCCCEE
Confidence            45667777777777777655  466677777777777642                       111  135667777777


Q ss_pred             eCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCC-ccccCccccCCCCCCcEEECCCCcC
Q psy8551         145 YLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAG-LTNISDNAFRGLSGLRSLVLTDNRL  223 (581)
Q Consensus       145 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~l~~n~l  223 (581)
                      ++++|.++......+..+++|++|++++|.+++..+..+..+++|+.|++++|. ++.++  .+..+++|+.|++++|++
T Consensus        94 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i  171 (197)
T 4ezg_A           94 RIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGV  171 (197)
T ss_dssp             EEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCC
T ss_pred             EeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCC
Confidence            777777776444467777778888888777776544557777888888888876 66554  467778888888888888


Q ss_pred             CccCccccCCCCCCCEEECCCCcccc
Q psy8551         224 QSIPTKQLSKLTRLEELEIGQNGFSM  249 (581)
Q Consensus       224 ~~~~~~~~~~l~~L~~L~l~~~~~~~  249 (581)
                      +.++  .+..+++|++|++++|++.+
T Consensus       172 ~~~~--~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          172 HDYR--GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCT--TGGGCSSCCEEEECBC----
T ss_pred             cChH--HhccCCCCCEEEeeCcccCC
Confidence            8765  47778888888888887653

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=5.1e-17  Score=145.93  Aligned_cols=150  Identities=13%  Similarity=0.179  Sum_probs=82.7

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      +++++|+++++.++.+| .+..+++|++|++++|.++.++  .+..+++|++|++++|.+                    
T Consensus        44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~n~l--------------------  100 (197)
T 4ezg_A           44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--PISGLSNLERLRIMGKDV--------------------  100 (197)
T ss_dssp             HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--GGTTCTTCCEEEEECTTC--------------------
T ss_pred             CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--hhhcCCCCCEEEeECCcc--------------------
Confidence            45666666666666555 4556666666666666554443  355566666666665542                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCc-ceeccCCcCCCCCCCcEEEcCCCCccccC
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV-FTTLADGAFNGLGRLSALDLRGAGLTNIS  203 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~L~~~~l~~~~  203 (581)
                         +...+..++.+++|++|++++|.++......+..+++|++|++++|. ++.++  .+..+++|+.|++++|.++.+.
T Consensus       101 ---~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          101 ---TSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             ---BGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT
T ss_pred             ---CcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH
Confidence               22222335555666666666666655333445556666666666665 44443  3555666666666666655543


Q ss_pred             ccccCCCCCCcEEECCCCcCC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQ  224 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~  224 (581)
                        .+..+++|+.|++++|++.
T Consensus       176 --~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 --GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             --TGGGCSSCCEEEECBC---
T ss_pred             --HhccCCCCCEEEeeCcccC
Confidence              3555566666666665543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.66  E-value=7.8e-16  Score=134.69  Aligned_cols=140  Identities=24%  Similarity=0.422  Sum_probs=104.6

Q ss_pred             CEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551         408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  487 (581)
Q Consensus       408 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~  487 (581)
                      +.++++++.++.++.. +  .++|++|++++|.+++.                         .+..|.++++|++|++++
T Consensus        15 ~~l~~~~n~l~~iP~~-~--~~~L~~L~Ls~N~l~~~-------------------------~~~~~~~l~~L~~L~Ls~   66 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAG-I--PTDKQRLWLNNNQITKL-------------------------EPGVFDHLVNLQQLYFNS   66 (174)
T ss_dssp             SEEECCSSCCSSCCSC-C--CTTCSEEECCSSCCCCC-------------------------CTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCccCCC-c--CCCCcEEEeCCCCcccc-------------------------CHHHhcCCcCCCEEECCC
Confidence            5667777666666532 2  25566666665555544                         344566677777778887


Q ss_pred             CCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCc-hhHHHHHHhhc-----------
Q psy8551         488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCN-ILWLREMLVRR-----------  554 (581)
Q Consensus       488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~-~~~~~~~~~~~-----------  554 (581)
                      | .+..+++..+.++++|++|++++|.|+.++.. +..+++|++|++++|||.|+|. +.|+..|....           
T Consensus        67 N-~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~~  145 (174)
T 2r9u_A           67 N-KLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNWVADHTSIVMRWDGKA  145 (174)
T ss_dssp             S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHHHHHCGGGEEEESSSE
T ss_pred             C-CCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHHHHhcccccccccccc
Confidence            8 77888777788999999999999999998875 7789999999999999999996 88999999774           


Q ss_pred             --CCCceeeCCCcccccccccccCcccc
Q psy8551         555 --NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       555 --~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                        ++..+.|+.+    |.++.+++++++
T Consensus       146 ~~~~~~~~C~~~----~~~~~~~~~~~~  169 (174)
T 2r9u_A          146 VNDPDSAKCAGT----NTPVRAVTEAST  169 (174)
T ss_dssp             EECGGGSBBTTT----CCBGGGCCGGGC
T ss_pred             cCCcccCEECCC----Cccceecccccc
Confidence              2344567764    577777777654

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.63  E-value=9.7e-16  Score=144.04  Aligned_cols=162  Identities=23%  Similarity=0.358  Sum_probs=135.9

Q ss_pred             ccCCCccCCC-CCCcCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccc
Q psy8551          32 QEANLDVIPS-HSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIV  110 (581)
Q Consensus        32 ~~~~l~~ip~-~~~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  110 (581)
                      .+..++.++. .-.+++++|++++|.++.++ .+..+++|++|++++|+++.++.  +..+++|++|++++|.+      
T Consensus        27 ~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l------   97 (263)
T 1xeu_A           27 GKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRL------   97 (263)
T ss_dssp             TCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCC------
T ss_pred             cCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCcc------
Confidence            6677777662 22389999999999999998 68899999999999999999886  89999999999999874      


Q ss_pred             cccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCc
Q psy8551         111 CSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLS  190 (581)
Q Consensus       111 ~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~  190 (581)
                                       +.++.  +.. ++|+.|++++|.++.++  .+..+++|++|++++|.+++++  .+..+++|+
T Consensus        98 -----------------~~l~~--~~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~--~l~~l~~L~  153 (263)
T 1xeu_A           98 -----------------KNLNG--IPS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV--MLGFLSKLE  153 (263)
T ss_dssp             -----------------SCCTT--CCC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG--GGGGCTTCC
T ss_pred             -----------------CCcCc--ccc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh--HHccCCCCC
Confidence                             22222  223 88999999999998874  5888999999999999998875  488899999


Q ss_pred             EEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc
Q psy8551         191 ALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT  228 (581)
Q Consensus       191 ~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~  228 (581)
                      .|++++|.++..  ..+..+++|+.|++++|.++..+.
T Consensus       154 ~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          154 VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             EEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            999999999887  468889999999999998887664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.62  E-value=3e-13  Score=134.78  Aligned_cols=300  Identities=18%  Similarity=0.267  Sum_probs=182.8

Q ss_pred             ccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccc
Q psy8551         127 ISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNA  206 (581)
Q Consensus       127 l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~  206 (581)
                      ++.+...+|.+|.+|+.+++.. .++.+...+|.++ +|+.+.+..+ ++.+...+|..+ +|+.+.+..+ ++.+....
T Consensus        57 vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~  131 (379)
T 4h09_A           57 ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYI  131 (379)
T ss_dssp             EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTT
T ss_pred             ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccc
Confidence            6677777888888888888864 4777777778776 5777776543 566666666654 6888887754 44455555


Q ss_pred             cCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCC
Q psy8551         207 FRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL  286 (581)
Q Consensus       207 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  286 (581)
                      |..+ ++..+.+..+ ++.+....+..+..++.+.+.............. ...            .......+.....+
T Consensus       132 F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~  196 (379)
T 4h09_A          132 FYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-YNK------------NKTILESYPAAKTG  196 (379)
T ss_dssp             TTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-EET------------TSSEEEECCTTCCC
T ss_pred             cccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-ccc------------ccceeccccccccc
Confidence            5544 5666665543 5556556677777777776654432211110000 000            00001122333445


Q ss_pred             CEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccc-ccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551         287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFS-ESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV  365 (581)
Q Consensus       287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~  365 (581)
                      ..+.+...  ...+....+..+..++.+.+..+ +..+. ..+..+..|+.+.+..+                       
T Consensus       197 ~~~~~~~~--~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-----------------------  250 (379)
T 4h09_A          197 TEFTIPST--VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-----------------------  250 (379)
T ss_dssp             SEEECCTT--CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-----------------------
T ss_pred             cccccccc--eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-----------------------
Confidence            55555443  33344445556666666666544 33332 24455666666666442                       


Q ss_pred             eecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551         366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~  445 (581)
                                                 +..+....|.++..|+.+.+.. .+..++...|..|++|+.+.+.++.++.+.
T Consensus       251 ---------------------------v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~  302 (379)
T 4h09_A          251 ---------------------------VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLE  302 (379)
T ss_dssp             ---------------------------CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEEC
T ss_pred             ---------------------------ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceeh
Confidence                                       2345556677777777777754 355666667777788888887777777777


Q ss_pred             cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCC
Q psy8551         446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPN  504 (581)
Q Consensus       446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~  504 (581)
                      ..+|.+|++|+.+.+..  .++.+...+|.+|.+|+++.+..+  ++.++..+|.+++.
T Consensus       303 ~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip~~--v~~I~~~aF~~c~~  357 (379)
T 4h09_A          303 PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISYPKS--ITLIESGAFEGSSI  357 (379)
T ss_dssp             TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTSSC
T ss_pred             hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEECCc--cCEEchhHhhCCCC
Confidence            77788888888887753  477777778888888888877654  66777777777643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.62  E-value=3.8e-18  Score=177.77  Aligned_cols=199  Identities=19%  Similarity=0.231  Sum_probs=140.9

Q ss_pred             CcCccEEEcccCCcccccccccCCCcccEEEcCCCc-------------eeecCCCCCCCCCcccEEe-CCCCCCCCccc
Q psy8551          44 NPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTT-------------WLIIPIGGFEPQEKLVELQ-LNHNKHFPQQI  109 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~-------------l~~~~~~~~~~l~~L~~L~-l~~n~~~~~~~  109 (581)
                      .++++.|+|++|+++.+|..++++++|+.|++++|.             .....+..+..+++|+.|+ ++.|.+     
T Consensus       348 ~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-----  422 (567)
T 1dce_A          348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-----  422 (567)
T ss_dssp             TTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-----
T ss_pred             CccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-----
Confidence            357777778888777777777777888887776653             1122223344555555555 343321     


Q ss_pred             ccccCCccccc--ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCC
Q psy8551         110 VCSIISPRRVE--IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLG  187 (581)
Q Consensus       110 ~~~~~~~~~L~--~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~  187 (581)
                             ..|.  .+..|.++.++.      ..|+.|++++|.++.++.  +..+++|+.|++++|.++.++. .+..++
T Consensus       423 -------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~  486 (567)
T 1dce_A          423 -------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPP-ALAALR  486 (567)
T ss_dssp             -------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCG-GGGGCT
T ss_pred             -------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccch-hhhcCC
Confidence                   1222  233344444432      258899999999998874  8889999999999999986654 688899


Q ss_pred             CCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccC-ccccCCCCCCCEEECCCCcccccCCcc---cCCCcccce
Q psy8551         188 RLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEAGC---FKGLSYLKR  263 (581)
Q Consensus       188 ~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~L~~  263 (581)
                      +|+.|++++|.++.++  .+..+++|+.|++++|++++++ +..+..+++|+.|++++|.++..++..   +..+++|+.
T Consensus       487 ~L~~L~Ls~N~l~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~  564 (567)
T 1dce_A          487 CLEVLQASDNALENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS  564 (567)
T ss_dssp             TCCEEECCSSCCCCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred             CCCEEECCCCCCCCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence            9999999999998864  6888999999999999999885 577888999999999999888776532   223455555


Q ss_pred             ee
Q psy8551         264 LE  265 (581)
Q Consensus       264 L~  265 (581)
                      |+
T Consensus       565 L~  566 (567)
T 1dce_A          565 IL  566 (567)
T ss_dssp             EE
T ss_pred             cC
Confidence            53

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.59  E-value=8.4e-13  Score=131.55  Aligned_cols=300  Identities=18%  Similarity=0.215  Sum_probs=184.6

Q ss_pred             CCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551         137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL  216 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  216 (581)
                      ...+|+.+.+.. .++.++..+|.+|.+|+.+.+..+ ++.+...+|.++ +|+.+.+..+                   
T Consensus        44 ~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-------------------  101 (379)
T 4h09_A           44 DRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-------------------  101 (379)
T ss_dssp             GGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-------------------
T ss_pred             cccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-------------------
Confidence            344555555542 344555555555555555555432 444444445444 3444444322                   


Q ss_pred             ECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCC
Q psy8551         217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPK  296 (581)
Q Consensus       217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  296 (581)
                            ++.+...+|..+ +|+.+.+..+ +..+....|.+. .++.+.+.  ..++.+....|..+..++.+.+.....
T Consensus       102 ------l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~--~~v~~i~~~~f~~~~~l~~~~~~~~~~  170 (379)
T 4h09_A          102 ------VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIP--KSVTTIKDGIGYKAENLEKIEVSSNNK  170 (379)
T ss_dssp             ------CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEEC--TTCCEECSCTTTTCTTCCEEEECTTCS
T ss_pred             ------eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeecc--ceeeccccchhcccccccccccccccc
Confidence                  333333334332 4444444432 223333333332 23333332  234444444555555555554443311


Q ss_pred             cc-----------ccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551         297 LK-----------TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV  365 (581)
Q Consensus       297 ~~-----------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~  365 (581)
                      ..           ......+.....+..+.+...........+.....++.+.+..+                       
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-----------------------  227 (379)
T 4h09_A          171 NYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-----------------------  227 (379)
T ss_dssp             SEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-----------------------
T ss_pred             eeecccceecccccceeccccccccccccccccceeEEeecccccccccceeeeccc-----------------------
Confidence            10           01111344555666666655433333345566777887777543                       


Q ss_pred             eecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeec
Q psy8551         366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE  445 (581)
Q Consensus       366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~  445 (581)
                                                 +..+....|.++..|+.+.+..+ ++.+....+..+.+|+.+.+.. .+...+
T Consensus       228 ---------------------------~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~  278 (379)
T 4h09_A          228 ---------------------------VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVP  278 (379)
T ss_dssp             ---------------------------CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEEC
T ss_pred             ---------------------------eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecc
Confidence                                       34466678888999999999875 7778878899999999999965 477888


Q ss_pred             cccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeecc-cccc
Q psy8551         446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE-SMLA  524 (581)
Q Consensus       446 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~~~~  524 (581)
                      ..+|.+|++|+.+.+.+ +.++.+...+|.+|.+|+.+.+..+  ++.++..+|.+|++|+++.+..+ ++.+.+ .+..
T Consensus       279 ~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~  354 (379)
T 4h09_A          279 YLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEG  354 (379)
T ss_dssp             TTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTT
T ss_pred             ccccccccccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhC
Confidence            88999999999999976 5788999999999999999999764  78898899999999999999764 776653 3444


Q ss_pred             C
Q psy8551         525 W  525 (581)
Q Consensus       525 ~  525 (581)
                      +
T Consensus       355 c  355 (379)
T 4h09_A          355 S  355 (379)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.58  E-value=1.8e-15  Score=132.06  Aligned_cols=136  Identities=21%  Similarity=0.253  Sum_probs=76.9

Q ss_pred             CCCCCCcCccEEEcccCCcc--cccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCc
Q psy8551          39 IPSHSNPSIQRLVLSTNRIK--TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISP  116 (581)
Q Consensus        39 ip~~~~~~l~~L~L~~~~i~--~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~  116 (581)
                      ++...++++++|++++|.++  .+|..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+            
T Consensus        18 ~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l------------   83 (168)
T 2ell_A           18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRI------------   83 (168)
T ss_dssp             HTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCC------------
T ss_pred             hccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcC------------
Confidence            34455567778888877777  6777677777777777777777666  4566666777777766653            


Q ss_pred             ccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcceeccC---CcCCCCCCCcEE
Q psy8551         117 RRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSAL  192 (581)
Q Consensus       117 ~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L  192 (581)
                                 +...+..+..+++|++|++++|.++.++. ..+..+++|++|++++|.++..+.   ..+..+++|+.|
T Consensus        84 -----------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L  152 (168)
T 2ell_A           84 -----------FGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYL  152 (168)
T ss_dssp             -----------CSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEE
T ss_pred             -----------chHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEe
Confidence                       22122233445566666666665555432 244445555555555554444333   233344444444


Q ss_pred             EcCCCCc
Q psy8551         193 DLRGAGL  199 (581)
Q Consensus       193 ~L~~~~l  199 (581)
                      ++++|.+
T Consensus       153 ~l~~n~~  159 (168)
T 2ell_A          153 DGYDRED  159 (168)
T ss_dssp             TTEETTS
T ss_pred             cCCCCCh
Confidence            4444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.58  E-value=6.5e-15  Score=145.05  Aligned_cols=140  Identities=26%  Similarity=0.364  Sum_probs=102.1

Q ss_pred             EEEcCCC-cCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCC
Q psy8551         409 SLVLTDN-RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNK  487 (581)
Q Consensus       409 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~  487 (581)
                      .++.+++ .++.+|.  +..+++|++|+|++                        ++.+..+.+..|.++++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~------------------------~n~l~~~~~~~~~~l~~L~~L~l~~   65 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH--LPGAENLTELYIEN------------------------QQHLQHLELRDLRGLGELRNLTIVK   65 (347)
T ss_dssp             CEECCSSCCCTTTTT--SCSCSCCSEEECCS------------------------CSSCCEECGGGSCSCCCCSEEECCS
T ss_pred             EEEcCCCCCCCccCC--CCCCCCeeEEEccC------------------------CCCCCCcChhHhccccCCCEEECCC
Confidence            3455555 5655553  55555555555553                        2344444445566677777888888


Q ss_pred             CCCceeecCCccCCCCCccEEEcCCCcceeeccccccCCcceEEecCCCcccccCchhHHHHHHhhcC----CCceeeCC
Q psy8551         488 NPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRN----TSAVFCNS  563 (581)
Q Consensus       488 ~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~~----~~~~~c~~  563 (581)
                      | .+..+++..|.++++|++|+|++|+|+.+|..+.....|++|++.+|++.|+|++.||..|.+...    ...+.|..
T Consensus        66 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~  144 (347)
T 2ifg_A           66 S-GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHG  144 (347)
T ss_dssp             S-CCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSS
T ss_pred             C-ccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCCceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCC
Confidence            8 788887888899999999999999999988766655559999999999999999999999998743    35678998


Q ss_pred             Cccccccccccc
Q psy8551         564 PAPLKYKSLISL  575 (581)
Q Consensus       564 ~~~~~~~~~~~~  575 (581)
                      |..++..++..+
T Consensus       145 ~~~l~~l~~~~c  156 (347)
T 2ifg_A          145 QGPLAHMPNASC  156 (347)
T ss_dssp             SSCSSCCCCTTC
T ss_pred             ChHHhcCCcccC
Confidence            876665554433

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=5.2e-15  Score=129.01  Aligned_cols=115  Identities=23%  Similarity=0.427  Sum_probs=98.8

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEP   90 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~   90 (581)
                      +||..|+|..   ..+.|  ++..++.+|..+++++++|+|++|.|+.++ ..|.++++|++|+|++|+|+.++...|..
T Consensus         2 ~CP~~C~C~~---~~l~~--s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~   76 (170)
T 3g39_A            2 ACPSQCSCSG---TTVDC--SGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDK   76 (170)
T ss_dssp             CCC-CCEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred             cCcCcCCcCC---CEEEe--CCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccC
Confidence            6999999976   67899  999999999999999999999999999884 57889999999999999999999888899


Q ss_pred             CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCccc
Q psy8551          91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSV  154 (581)
Q Consensus        91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~  154 (581)
                      +++|++|++++|.                       ++.+++..|..+++|+.|++++|.+...
T Consensus        77 l~~L~~L~L~~N~-----------------------l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           77 LTQLTQLSLNDNQ-----------------------LKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             CTTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCCCCEEECCCCc-----------------------cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999999999875                       4555566678888888999888877644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=7.1e-15  Score=128.55  Aligned_cols=117  Identities=25%  Similarity=0.420  Sum_probs=101.9

Q ss_pred             hcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccccc-ccccCCCcccEEEcCCCceeecCCCCCC
Q psy8551          11 SKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGFE   89 (581)
Q Consensus        11 ~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~   89 (581)
                      .+||..|+|..   ..+.|  ++.+++.+|..+++++++|+|++|.++.++ ..|.++++|++|+|++|+|+.++...|.
T Consensus         4 ~~CP~~C~C~~---~~l~~--~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~   78 (174)
T 2r9u_A            4 AGCPSQCSCDQ---TLVNC--QNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD   78 (174)
T ss_dssp             CSSCTTSEECS---SEEEC--CSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             CCCCCCCEECC---cEEEe--CCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhC
Confidence            57999999976   67899  999999999999999999999999999884 5788999999999999999999988889


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccC
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP  155 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~  155 (581)
                      .+++|++|++++|.                       ++.+++..|..+++|++|++++|.+...+
T Consensus        79 ~l~~L~~L~L~~N~-----------------------l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           79 KLTQLTQLDLNDNH-----------------------LKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCTTCCEEECCSSC-----------------------CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CcchhhEEECCCCc-----------------------cceeCHHHhccccCCCEEEeCCCCccccc
Confidence            99999999999886                       44555666888889999999988877554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=1.6e-14  Score=123.16  Aligned_cols=126  Identities=23%  Similarity=0.245  Sum_probs=74.8

Q ss_pred             CcCccEEEcccCCcc--cccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccc
Q psy8551          44 NPSIQRLVLSTNRIK--TVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEI  121 (581)
Q Consensus        44 ~~~l~~L~L~~~~i~--~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~  121 (581)
                      ++++++|++++|.++  .+|..+..+++|++|++++|.++.+  ..+..+++|++|++++|.+                 
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i-----------------   76 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRV-----------------   76 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCC-----------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcc-----------------
Confidence            467777777777776  6666667777777777777777666  4566667777777776653                 


Q ss_pred             cCcccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcceeccC---CcCCCCCCCcEEEc
Q psy8551         122 FGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTLAD---GAFNGLGRLSALDL  194 (581)
Q Consensus       122 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~L  194 (581)
                            +...+..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+++.++   ..+..+++|+.|++
T Consensus        77 ------~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           77 ------SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             ------CSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             ------cchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence                  22223334455666666666666655431 245555555555555555554443   23444445555444

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.50  E-value=4.2e-14  Score=123.32  Aligned_cols=136  Identities=21%  Similarity=0.138  Sum_probs=98.7

Q ss_pred             CCCcccEEEcCCCcee--ecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcE
Q psy8551          66 IYLSLQHVDLSHTTWL--IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRI  143 (581)
Q Consensus        66 ~~~~L~~L~ls~~~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~  143 (581)
                      ..++|++|++++|.++  .++. .+..+++|++|++++|.+                       +.+  ..+..+++|++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l-----------------------~~~--~~~~~l~~L~~   75 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGL-----------------------ISV--SNLPKLPKLKK   75 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCC-----------------------CCC--SSCCCCSSCCE
T ss_pred             CcccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCC-----------------------CCh--hhhccCCCCCE
Confidence            4578999999999988  6664 578888999999988763                       223  34677888888


Q ss_pred             EeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccccCc---cccCCCCCCcEEECC
Q psy8551         144 LYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNISD---NAFRGLSGLRSLVLT  219 (581)
Q Consensus       144 L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~~---~~l~~~~~L~~L~l~  219 (581)
                      |++++|.++...+..+..+++|++|++++|.+++++. ..+..+++|+.|++++|.++..++   ..+..+++|++|+++
T Consensus        76 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  155 (168)
T 2ell_A           76 LELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY  155 (168)
T ss_dssp             EEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred             EECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence            8888888887555456668888888888888776543 456677777777777777766654   456666677777777


Q ss_pred             CCcCCccC
Q psy8551         220 DNRLQSIP  227 (581)
Q Consensus       220 ~n~l~~~~  227 (581)
                      +|.+..++
T Consensus       156 ~n~~~~~~  163 (168)
T 2ell_A          156 DREDQEAP  163 (168)
T ss_dssp             ETTSCBCC
T ss_pred             CCChhhcc
Confidence            66666555

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=7e-14  Score=122.85  Aligned_cols=136  Identities=21%  Similarity=0.299  Sum_probs=115.6

Q ss_pred             ccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCC
Q psy8551         400 AFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLN  479 (581)
Q Consensus       400 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  479 (581)
                      .+..+++|+.|++++|.++.++ ......++|++|++++|.+++.  ..+..+++|++|++++ +.++.+++..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~-~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIE-NLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNN-NRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCC-CGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCS-SCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchhH-HhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCC-CcccccCcchhhcCCC
Confidence            3556889999999999999774 3333345999999999999987  5688999999999998 5778887777789999


Q ss_pred             CCeeeCCCCCCceeecC-CccCCCCCccEEEcCCCcceeeccc----cccCCcceEEecCCCcccc
Q psy8551         480 LETLTLNKNPKLKIIEE-DALVGLPNLYHLNLKENAFTSFSES----MLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       480 L~~L~l~~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~l~~~----~~~~~~L~~L~l~~np~~c  540 (581)
                      |++|++++| .++.++. ..+..+++|++|++++|.++.+|..    +..+++|+.|++++|+..-
T Consensus        90 L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            999999999 7787764 3688999999999999999988875    7889999999999998753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=6.2e-14  Score=123.18  Aligned_cols=90  Identities=22%  Similarity=0.238  Sum_probs=40.8

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccccCcc---ccCCC
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNISDN---AFRGL  210 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~~~~---~l~~~  210 (581)
                      +..+++|+.|++++|.++.++...+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++..+..   .+..+
T Consensus        60 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l  139 (176)
T 1a9n_A           60 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKV  139 (176)
T ss_dssp             CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHC
T ss_pred             cccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHC
Confidence            3334444444444444444443333444444444444444443332 1344445555555555554443321   24445


Q ss_pred             CCCcEEECCCCcCC
Q psy8551         211 SGLRSLVLTDNRLQ  224 (581)
Q Consensus       211 ~~L~~L~l~~n~l~  224 (581)
                      ++|+.|++++|...
T Consensus       140 ~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          140 PQVRVLDFQKVKLK  153 (176)
T ss_dssp             TTCSEETTEECCHH
T ss_pred             CccceeCCCcCCHH
Confidence            55555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.44  E-value=1.8e-13  Score=116.58  Aligned_cols=128  Identities=20%  Similarity=0.200  Sum_probs=106.2

Q ss_pred             CCCCCcEEeCCCCcCc--ccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551         137 GLTALRILYLDDNQLR--SVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR  214 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~  214 (581)
                      ..++|+.|++++|.++  .++. .+..+++|++|++++|.++++  ..+..+++|+.|++++|.++...+..+..+++|+
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             CCccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            3478999999999998  5554 678899999999999999887  5688999999999999999886666677789999


Q ss_pred             EEECCCCcCCccC-ccccCCCCCCCEEECCCCcccccCC---cccCCCcccceeeec
Q psy8551         215 SLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSYLKRLEIT  267 (581)
Q Consensus       215 ~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~  267 (581)
                      +|++++|++++++ +..+..+++|++|++++|.++..+.   ..+..+++|+.|+++
T Consensus        92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            9999999998864 2568889999999999999887766   456777777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.42  E-value=4.7e-15  Score=154.48  Aligned_cols=121  Identities=25%  Similarity=0.322  Sum_probs=92.2

Q ss_pred             CCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeC
Q psy8551         406 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL  485 (581)
Q Consensus       406 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l  485 (581)
                      .|+.|++++|.+++++.  +..+++|+.|++++|.++.+ |..+..+++|+.|++++ +.++.++  .+.++++|++|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~-N~l~~lp--~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASD-NALENVD--GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCS-SCCCCCG--GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCCCcC--ccccccCcEeecCccccccc-chhhhcCCCCCEEECCC-CCCCCCc--ccCCCCCCcEEEC
Confidence            48889999998888763  88888899999998888854 45678888888888887 4555553  6778888888888


Q ss_pred             CCCCCceeec-CCccCCCCCccEEEcCCCcceeeccccc----cCCcceEEec
Q psy8551         486 NKNPKLKIIE-EDALVGLPNLYHLNLKENAFTSFSESML----AWPELRTIDI  533 (581)
Q Consensus       486 ~~~~~l~~~~-~~~~~~l~~L~~L~l~~n~l~~l~~~~~----~~~~L~~L~l  533 (581)
                      ++| .+..++ +..+..+++|+.|++++|.++++|+...    .+++|+.|++
T Consensus       516 s~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            888 666664 5667888888888888888887665432    3677777754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=9.5e-14  Score=149.34  Aligned_cols=155  Identities=19%  Similarity=0.183  Sum_probs=59.9

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEE-----cCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVD-----LSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRV  119 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~-----ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  119 (581)
                      ++++.|+|.++.+...+..+....+|..+.     ++.|.+. ++...+..+++|++|+|++|.+               
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l---------------  236 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQI---------------  236 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCC---------------
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCC---------------
Confidence            567888888887776654333332222222     2223222 3345566677777777777653               


Q ss_pred             cccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCc
Q psy8551         120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGL  199 (581)
Q Consensus       120 ~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l  199 (581)
                              ..++.. +.++++|++|+|++|.++.++. .+..+++|++|+|++|.++.++ ..+.++++|+.|+|++|.+
T Consensus       237 --------~~l~~~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L~~N~l  305 (727)
T 4b8c_D          237 --------FNISAN-IFKYDFLTRLYLNGNSLTELPA-EIKNLSNLRVLDLSHNRLTSLP-AELGSCFQLKYFYFFDNMV  305 (727)
T ss_dssp             --------SCCCGG-GGGCCSCSCCBCTTSCCSCCCG-GGGGGTTCCEEECTTSCCSSCC-SSGGGGTTCSEEECCSSCC
T ss_pred             --------CCCChh-hcCCCCCCEEEeeCCcCcccCh-hhhCCCCCCEEeCcCCcCCccC-hhhcCCCCCCEEECCCCCC
Confidence                    122222 2245556666666666554443 4555556666666666555442 2355555555555555555


Q ss_pred             cccCccccCCCCCCcEEECCCCcCCccC
Q psy8551         200 TNISDNAFRGLSGLRSLVLTDNRLQSIP  227 (581)
Q Consensus       200 ~~~~~~~l~~~~~L~~L~l~~n~l~~~~  227 (581)
                      +.++. .|..+++|+.|+|++|.+++.+
T Consensus       306 ~~lp~-~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          306 TTLPW-EFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             CCCCS-STTSCTTCCCEECTTSCCCSHH
T ss_pred             CccCh-hhhcCCCccEEeCCCCccCCCC
Confidence            54433 2555555555555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.37  E-value=7.8e-14  Score=150.03  Aligned_cols=165  Identities=24%  Similarity=0.163  Sum_probs=109.4

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI  127 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l  127 (581)
                      ..+++..+.+...+..+..+++|+.|+|++|.+..++...+ .+++|++|+|++|.+                       
T Consensus       204 ~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l-----------------------  259 (727)
T 4b8c_D          204 DEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSL-----------------------  259 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCC-----------------------
T ss_pred             cCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcC-----------------------
Confidence            33344444444445678899999999999999998886544 899999999999864                       


Q ss_pred             cccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCcccc
Q psy8551         128 SRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF  207 (581)
Q Consensus       128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l  207 (581)
                      +.+ +..|+++++|+.|+|++|.++.+|. .+..+++|++|+|++|.++.++. .|..+++|+.|+|++|.+++..+..+
T Consensus       260 ~~l-p~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~lp~-~~~~l~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          260 TEL-PAEIKNLSNLRVLDLSHNRLTSLPA-ELGSCFQLKYFYFFDNMVTTLPW-EFGNLCNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             SCC-CGGGGGGTTCCEEECTTSCCSSCCS-SGGGGTTCSEEECCSSCCCCCCS-STTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred             ccc-ChhhhCCCCCCEEeCcCCcCCccCh-hhcCCCCCCEEECCCCCCCccCh-hhhcCCCccEEeCCCCccCCCChHHH
Confidence            333 3457889999999999999998866 78899999999999999987766 49999999999999999987766555


Q ss_pred             CCCC-CCcEEECCCCcCCccCccccCCCCCCCEEECCCC
Q psy8551         208 RGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN  245 (581)
Q Consensus       208 ~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~  245 (581)
                      .... .+..+++++|.++...+      ..|+.|+++.|
T Consensus       337 ~~~~~~~~~l~l~~N~l~~~~p------~~l~~l~l~~n  369 (727)
T 4b8c_D          337 TEKSVTGLIFYLRDNRPEIPLP------HERRFIEINTD  369 (727)
T ss_dssp             HHHHHHHHHHHHHHCCCCCCCC------CC---------
T ss_pred             hhcchhhhHHhhccCcccCcCc------cccceeEeecc
Confidence            3321 11235667776664432      24555666555

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=99.36  E-value=1.2e-12  Score=107.25  Aligned_cols=95  Identities=25%  Similarity=0.426  Sum_probs=79.0

Q ss_pred             eeeCCCCCCce--eecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhhcC---
Q psy8551         482 TLTLNKNPKLK--IIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVRRN---  555 (581)
Q Consensus       482 ~L~l~~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~~---  555 (581)
                      .++.+++ .++  .+|.. +  -++|++|+|++|+|+.++.. +..+++|++|+|++|||.|+|+++||.+|++...   
T Consensus        12 ~v~Cs~~-~L~~~~vP~~-l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~wl~~~~~~~   87 (130)
T 3rfe_A           12 LVDCGRR-GLTWASLPTA-F--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAWLAGRPERA   87 (130)
T ss_dssp             EEECCSS-CCCTTTSCSC-C--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHHHHHTSSCSG
T ss_pred             EEEeCCC-CCccccCCCC-C--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCccHHHHHHHHhCcccc
Confidence            5666666 666  66532 1  24799999999999999865 5678999999999999999999999999998753   


Q ss_pred             -CCceeeCCCcccccccccccCcccc
Q psy8551         556 -TSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       556 -~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                       ...++|..|..++|+++.+++++++
T Consensus        88 ~~~~~~C~~P~~l~g~~l~~l~~~~l  113 (130)
T 3rfe_A           88 PYRDLRCVAPPALRGRLLPYLAEDEL  113 (130)
T ss_dssp             GGTTCBCCBSTTTTTCBGGGCCHHHH
T ss_pred             cccCcEeCcChHHcCCCcccCCHHHh
Confidence             2457899999999999999998875

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.28  E-value=1.1e-11  Score=121.89  Aligned_cols=111  Identities=16%  Similarity=0.311  Sum_probs=82.1

Q ss_pred             CCCCC-CCCCCccCCCccccccC-CCccCCCCCC--cCccEEEccc-CCcccccc-cccCCCcccEEEcCCCceeecCCC
Q psy8551          13 CMNPY-EPSRFSTRDPSCNLQEA-NLDVIPSHSN--PSIQRLVLST-NRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIG   86 (581)
Q Consensus        13 ~~~~c-~~~~~~~~~~~c~~~~~-~l~~ip~~~~--~~l~~L~L~~-~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~   86 (581)
                      ||..| .|..   ..+.|  .+. +++.||. ++  ++|++|+|++ |.++.++. .|.++++|++|+|++|+|+.+++.
T Consensus         1 cp~~c~~C~~---~~v~~--~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   74 (347)
T 2ifg_A            1 CPDACCPHGS---SGLRC--TRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD   74 (347)
T ss_dssp             CCSSSCCSSS---SCEEC--CSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred             CCCcCccccC---CEEEc--CCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHH
Confidence            89999 9976   57899  887 8888888 65  4588888885 88887774 677888888888888888888777


Q ss_pred             CCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcc
Q psy8551          87 GFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRS  153 (581)
Q Consensus        87 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~  153 (581)
                      .|.++++|++|+|++|.                       ++.+++..|..++ |+.|++.+|.+..
T Consensus        75 ~~~~l~~L~~L~l~~N~-----------------------l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           75 AFHFTPRLSRLNLSFNA-----------------------LESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             GGGSCSCCCEEECCSSC-----------------------CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             HhcCCcCCCEEeCCCCc-----------------------cceeCHHHcccCC-ceEEEeeCCCccC
Confidence            77778888888887775                       3334444444444 7777777776653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.22  E-value=8e-14  Score=125.07  Aligned_cols=129  Identities=23%  Similarity=0.246  Sum_probs=87.6

Q ss_pred             CccEEEcccC--CcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccC
Q psy8551          46 SIQRLVLSTN--RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFG  123 (581)
Q Consensus        46 ~l~~L~L~~~--~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~  123 (581)
                      .++...+.+.  .++.+|..+..+++|++|++++|.++.++  .+..+++|++|++++|.+                   
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l-------------------   82 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLI-------------------   82 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEE-------------------
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCc-------------------
Confidence            5666666654  56667778888889999999988888876  677788888888888753                   


Q ss_pred             cccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCcccc
Q psy8551         124 QNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       124 ~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                          +.++ ..+..+++|+.|++++|.++.++  .+..+++|++|++++|.++.++. ..+..+++|+.|++++|.++..
T Consensus        83 ----~~l~-~~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~  155 (198)
T 1ds9_A           83 ----KKIE-NLDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             ----CSCS-SHHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred             ----cccc-chhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence                2221 22344577778888777777764  46667777777777777665443 2355666666666666655443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=5.7e-14  Score=126.04  Aligned_cols=87  Identities=26%  Similarity=0.391  Sum_probs=42.7

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc-cccCCCCCC
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD-NAFRGLSGL  213 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~-~~l~~~~~L  213 (581)
                      +..+++|+.|++++|.++.++. .+..+++|++|++++|.+++++  .+..+++|+.|++++|.++.+.. ..+..+++|
T Consensus        66 ~~~l~~L~~L~l~~n~l~~l~~-~~~~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L  142 (198)
T 1ds9_A           66 LSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL  142 (198)
T ss_dssp             HHHHTTCCEEEEEEEEECSCSS-HHHHHHHCSEEEEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred             cccCCCCCEEECCCCCcccccc-hhhcCCcCCEEECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCC
Confidence            4444555555555555554443 3344455555555555555443  24444555555555555444332 234445555


Q ss_pred             cEEECCCCcCC
Q psy8551         214 RSLVLTDNRLQ  224 (581)
Q Consensus       214 ~~L~l~~n~l~  224 (581)
                      ++|++++|.++
T Consensus       143 ~~L~l~~N~l~  153 (198)
T 1ds9_A          143 EDLLLAGNPLY  153 (198)
T ss_dssp             SEEEECSCHHH
T ss_pred             CEEEecCCccc
Confidence            55555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.00  E-value=2.7e-11  Score=119.30  Aligned_cols=111  Identities=20%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CCcEEeCCCCcCcccCCccc-----ccCccCcEEECCCCcceeccC----CcCCCCCCCcEEEcCCCCccccC----ccc
Q psy8551         140 ALRILYLDDNQLRSVPTPSF-----IYLGMLAELRVGLNVFTTLAD----GAFNGLGRLSALDLRGAGLTNIS----DNA  206 (581)
Q Consensus       140 ~L~~L~l~~~~i~~~~~~~~-----~~~~~L~~L~L~~n~~~~~~~----~~l~~l~~L~~L~L~~~~l~~~~----~~~  206 (581)
                      +|+.|++++|.++......+     ...++|++|+|++|.++....    ..+..+++|++|+|++|.++...    ...
T Consensus       127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~  206 (372)
T 3un9_A          127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ  206 (372)
T ss_dssp             TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred             hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence            45555555555543322222     123455555555555543211    12244556666666666655432    223


Q ss_pred             cCCCCCCcEEECCCCcCCccCc----cccCCCCCCCEEECCCCccccc
Q psy8551         207 FRGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLEELEIGQNGFSML  250 (581)
Q Consensus       207 l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~  250 (581)
                      +...++|++|++++|.++....    ..+...++|++|++++|.++..
T Consensus       207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence            4445667777777776664221    2233456677777777766543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.98  E-value=1.4e-11  Score=121.38  Aligned_cols=89  Identities=18%  Similarity=0.126  Sum_probs=45.9

Q ss_pred             CCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCCcceecc----CCcCCCCCCCcEEEcCCCCccccCcc---
Q psy8551         137 GLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNISDN---  205 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~~~~---  205 (581)
                      ..++|++|++++|.++.....    .+..+++|++|+|++|.+++..    ...+...++|+.|+|++|.++.....   
T Consensus       153 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~  232 (372)
T 3un9_A          153 DQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALA  232 (372)
T ss_dssp             TTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHH
T ss_pred             cCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHH
Confidence            345566666666665542221    2244556666666666655322    12344455666666666665543321   


Q ss_pred             -ccCCCCCCcEEECCCCcCCc
Q psy8551         206 -AFRGLSGLRSLVLTDNRLQS  225 (581)
Q Consensus       206 -~l~~~~~L~~L~l~~n~l~~  225 (581)
                       .+...++|++|++++|.++.
T Consensus       233 ~~L~~~~~L~~L~Ls~N~i~~  253 (372)
T 3un9_A          233 RAAREHPSLELLHLYFNELSS  253 (372)
T ss_dssp             HHHHHCSSCCEEECTTSSCCH
T ss_pred             HHHHhCCCCCEEeccCCCCCH
Confidence             22234566666666666553

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=8e-09  Score=88.15  Aligned_cols=85  Identities=11%  Similarity=0.129  Sum_probs=39.2

Q ss_pred             CCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCC----CCCCeeeCCCCCCceeecCCccCCCCCc
Q psy8551         430 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN----LNLETLTLNKNPKLKIIEEDALVGLPNL  505 (581)
Q Consensus       430 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~l~~L  505 (581)
                      .|++|+++++.++......+..+++|++|++++|..+++.....+..+    ++|++|++++|..+++-....+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            344444444444444333344444445555544444444433333332    2455555555544444333334445555


Q ss_pred             cEEEcCCCc
Q psy8551         506 YHLNLKENA  514 (581)
Q Consensus       506 ~~L~l~~n~  514 (581)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.47  E-value=5.6e-08  Score=94.77  Aligned_cols=135  Identities=19%  Similarity=0.182  Sum_probs=77.4

Q ss_pred             CCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceeeccccc--cCCccccEEeecCCC-------CeeEecCC
Q psy8551         402 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF--KGLSYLKRLEITGAS-------NLTRVRKG  472 (581)
Q Consensus       402 ~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~~--~~~~~L~~L~l~~~~-------~l~~~~~~  472 (581)
                      ..+|+|+.|.+.++.-..+++  + .+++|++|++..+.+.......+  ..+++|++|+|+.+.       .+..+.. 
T Consensus       169 ~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~-  244 (362)
T 2ra8_A          169 DAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP-  244 (362)
T ss_dssp             HTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG-
T ss_pred             hcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH-
Confidence            446677777776652112221  2 26677777776666554332223  256777777764211       1111111 


Q ss_pred             cc--CCCCCCCeeeCCCCCCceeecCCc--cCCCCCccEEEcCCCccee-----eccccccCCcceEEecCCCcccc
Q psy8551         473 AF--ADNLNLETLTLNKNPKLKIIEEDA--LVGLPNLYHLNLKENAFTS-----FSESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       473 ~~--~~~~~L~~L~l~~~~~l~~~~~~~--~~~l~~L~~L~l~~n~l~~-----l~~~~~~~~~L~~L~l~~np~~c  540 (581)
                      .+  ..+++|++|++.+|..........  ...+++|++|+|+.|.++.     ++..+..+++|+.|++++|+++-
T Consensus       245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            12  246788888888883322211111  1357788889988888874     44555667888888888887753

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=98.45  E-value=1.3e-07  Score=77.19  Aligned_cols=65  Identities=18%  Similarity=0.352  Sum_probs=55.7

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCc--cCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCcee
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLD--VIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL   81 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~--~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~   81 (581)
                      +||..|.|..   ..+.|  ++.+++  .||..+++++++|+|++|+|+.++. .|..+++|++|+|++|.+.
T Consensus         1 ~CP~~C~C~~---~~v~C--s~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A            1 PCPAPCSCAG---TLVDC--GRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             CCCTTCEEET---TEEEC--CSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CcCCCCEEcC---CEEEe--CCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5999999976   68999  999999  9999999999999999999998876 5677888888888877543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.44  E-value=2.5e-08  Score=85.06  Aligned_cols=90  Identities=20%  Similarity=0.152  Sum_probs=78.1

Q ss_pred             CCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC-cceeeccccccCC----ccccEEeecCCCCeeEecCCccCCCCC
Q psy8551         405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGL----SYLKRLEITGASNLTRVRKGAFADNLN  479 (581)
Q Consensus       405 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~~~~~----~~L~~L~l~~~~~l~~~~~~~~~~~~~  479 (581)
                      ..|+.|+++++.++......+..+++|++|++++| .+++.....+..+    ++|++|++++|..+++.....+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            46999999999998877778899999999999999 4887766666654    589999999999999988778889999


Q ss_pred             CCeeeCCCCCCceee
Q psy8551         480 LETLTLNKNPKLKII  494 (581)
Q Consensus       480 L~~L~l~~~~~l~~~  494 (581)
                      |++|++++|+.+++.
T Consensus       141 L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          141 LKYLFLSDLPGVKEK  155 (176)
T ss_dssp             CCEEEEESCTTCCCH
T ss_pred             CCEEECCCCCCCCch
Confidence            999999999877764

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=2.1e-07  Score=81.72  Aligned_cols=120  Identities=13%  Similarity=0.055  Sum_probs=78.7

Q ss_pred             cccCCCCCCCEEEcCCC-cCCccC----hhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCc
Q psy8551         399 NAFRGLSGLRSLVLTDN-RLQSIP----TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGA  473 (581)
Q Consensus       399 ~~~~~~~~L~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  473 (581)
                      ..+...+.|++|++++| .+....    ...+...++|++|+|++|.+.......+.                     ..
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~---------------------~~   88 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------------EM   88 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------------HH
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH---------------------HH
Confidence            34556788888888888 776432    24456677788888888777654322211                     11


Q ss_pred             cCCCCCCCeeeCCCCCCceeec----CCccCCCCCccEEEc--CCCccee-----eccccccCCcceEEecCCCcccc
Q psy8551         474 FADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNL--KENAFTS-----FSESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       474 ~~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l--~~n~l~~-----l~~~~~~~~~L~~L~l~~np~~c  540 (581)
                      +...++|++|++++| .++...    ...+...++|++|+|  ++|.++.     +.+.+...++|++|++++|.+..
T Consensus        89 L~~n~~L~~L~L~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~  165 (185)
T 1io0_A           89 LKVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  165 (185)
T ss_dssp             HHHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             HHhCCCcCEEECcCC-cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence            223456677777777 444421    234666788999999  7788873     55666778899999999998854

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.24  E-value=4.2e-07  Score=88.55  Aligned_cols=66  Identities=18%  Similarity=0.181  Sum_probs=42.1

Q ss_pred             CCCCCcEEEcCCCCccccCcccc---CCCCCCcEEECCCCcCCccCc----cccCCCCCCCEEECCCCccccc
Q psy8551         185 GLGRLSALDLRGAGLTNISDNAF---RGLSGLRSLVLTDNRLQSIPT----KQLSKLTRLEELEIGQNGFSML  250 (581)
Q Consensus       185 ~l~~L~~L~L~~~~l~~~~~~~l---~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~~~~~~~  250 (581)
                      .+++|+.|++.+|.++......+   ..+++|++|+++.|.++....    ..+..+++|+.|+++.|.++..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~  322 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE  322 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH
Confidence            46788888887777654222122   246778888888887775211    2234567888888888876643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=6.1e-07  Score=78.70  Aligned_cols=117  Identities=10%  Similarity=0.026  Sum_probs=81.9

Q ss_pred             hhhcCCCCCCcEEeCCCC-cCcccCC----cccccCccCcEEECCCCcceecc----CCcCCCCCCCcEEEcCCCCcccc
Q psy8551         132 QACFEGLTALRILYLDDN-QLRSVPT----PSFIYLGMLAELRVGLNVFTTLA----DGAFNGLGRLSALDLRGAGLTNI  202 (581)
Q Consensus       132 ~~~l~~~~~L~~L~l~~~-~i~~~~~----~~~~~~~~L~~L~L~~n~~~~~~----~~~l~~l~~L~~L~L~~~~l~~~  202 (581)
                      ...+...+.|++|++++| .+.....    ..+...++|++|+|++|.+....    ...+...+.|++|+|++|.++..
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            455778899999999998 8875322    23455688999999999886432    22345567888899988888754


Q ss_pred             C----ccccCCCCCCcEEEC--CCCcCCccC----ccccCCCCCCCEEECCCCccc
Q psy8551         203 S----DNAFRGLSGLRSLVL--TDNRLQSIP----TKQLSKLTRLEELEIGQNGFS  248 (581)
Q Consensus       203 ~----~~~l~~~~~L~~L~l--~~n~l~~~~----~~~~~~l~~L~~L~l~~~~~~  248 (581)
                      .    ...+...++|++|++  ++|.+....    ...+...++|++|++++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            3    234556778888888  778887422    134555678888888888765

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.69  E-value=8.5e-06  Score=75.08  Aligned_cols=65  Identities=25%  Similarity=0.289  Sum_probs=41.1

Q ss_pred             CCCCCCcEEeCCCCcCcccCC--cccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccc
Q psy8551         136 EGLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTN  201 (581)
Q Consensus       136 ~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~  201 (581)
                      .++++|+.|+|++|.++++..  ..+..+++|+.|+|++|.+.+... ..+..+ +|+.|++.+|.++.
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            456788888888888877542  245567778888888877765521 122222 66666666666553

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.57  E-value=7.2e-06  Score=75.57  Aligned_cols=63  Identities=27%  Similarity=0.373  Sum_probs=28.9

Q ss_pred             CCCCcEEEcCCCCccccCc--cccCCCCCCcEEECCCCcCCccC-ccccCCCCCCCEEECCCCcccc
Q psy8551         186 LGRLSALDLRGAGLTNISD--NAFRGLSGLRSLVLTDNRLQSIP-TKQLSKLTRLEELEIGQNGFSM  249 (581)
Q Consensus       186 l~~L~~L~L~~~~l~~~~~--~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~~~~~~  249 (581)
                      +++|+.|+|++|.++.+..  ..+..+++|+.|+|++|+++++. ...+..+ +|++|++++|.+..
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCcc
Confidence            3444555555554444321  22334555555555555555441 1112222 55666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.79  E-value=0.0012  Score=57.42  Aligned_cols=42  Identities=14%  Similarity=0.061  Sum_probs=21.3

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcc----cccCccCcEEECCCCcce
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPS----FIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~----~~~~~~L~~L~L~~n~~~  176 (581)
                      +..-..|+.|+|++|.+.+.....    +..-+.|++|+|++|.|+
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            444556666666666655432222    223345555555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.67  E-value=0.00089  Score=58.14  Aligned_cols=63  Identities=19%  Similarity=0.146  Sum_probs=28.6

Q ss_pred             CCCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCC---cceec----cCCcCCCCCCCcEEEcCCCC
Q psy8551         136 EGLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLN---VFTTL----ADGAFNGLGRLSALDLRGAG  198 (581)
Q Consensus       136 ~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n---~~~~~----~~~~l~~l~~L~~L~L~~~~  198 (581)
                      ..-+.|++|+|++|.|......    ++..-+.|++|+|+++   .+...    ...++...+.|+.|+++.+.
T Consensus        95 ~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A           95 ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence            3345556666665555532221    2233344666666543   22211    11233444566666665543

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=91.81  E-value=0.34  Score=36.62  Aligned_cols=49  Identities=18%  Similarity=0.294  Sum_probs=37.4

Q ss_pred             CCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCC
Q psy8551         390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN  439 (581)
Q Consensus       390 ~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~  439 (581)
                      +..++.|....|.+|.+|+++.|.. .++.+....|..|.+|+.+.+...
T Consensus         5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~   53 (100)
T 2lz0_A            5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGE   53 (100)
T ss_dssp             CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred             CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCC
Confidence            4456778888888888888888876 466677677888888888887654

>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}

Probab=87.47  E-value=1.6  Score=32.85  Aligned_cols=45  Identities=20%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             ccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCC
Q psy8551         199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ  244 (581)
Q Consensus       199 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  244 (581)
                      ++.+....|.+|.+|+.+.+..+ ++.+...+|..|.+|+.+.+..
T Consensus         8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~   52 (100)
T 2lz0_A            8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG   52 (100)
T ss_dssp             CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred             cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence            33344444444444444444442 4444444455555555555443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	581
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-17
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-05
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-17
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-13
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-14
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-12
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	4e-09
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-07
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.001
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	4e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	3e-05
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	4e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.1 bits (196), Expect = 4e-17
 Identities = 61/308 (19%), Positives = 120/308 (38%), Gaps = 17/308 (5%)

Query: 19  PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTV-DSAIPIYLSLQHVDLSH 77
           P R           +  L+ +P    P    L L  N+I  + D       +L  + L +
Sbjct: 5   PFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILIN 64

Query: 78  TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG 137
                I  G F P  KL  L L+ N+   +++   +    +     +N I+++ ++ F G
Sbjct: 65  NKISKISPGAFAPLVKLERLYLSKNQL--KELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 138 LTALRILYLDDNQLRSVPTP--SFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLR 195
           L  + ++ L  N L+S      +F  +  L+ +R+     TT+  G       L+ L L 
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP---SLTELHLD 179

Query: 196 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCF 255
           G  +T +   + +GL+ L  L L+ N + ++    L+    L EL +  N    +  G  
Sbjct: 180 GNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA 239

Query: 256 KGLSYLKRLEITGASNLTRVRKGAFAD------NLNLETLTLNKNP-KLKTIEEGALVGL 308
               Y++ + +   +N++ +    F          +   ++L  NP +   I+      +
Sbjct: 240 -DHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 297

Query: 309 PNLYHLNL 316
                + L
Sbjct: 298 YVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 4e-14
 Identities = 61/306 (19%), Positives = 102/306 (33%), Gaps = 22/306 (7%)

Query: 141 LRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT 200
           LR++   D  L  VP          A L +  N  T + DG F  L  L  L L    ++
Sbjct: 12  LRVVQCSDLGLEKVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
            IS  AF  L  L  L L+ N+L+ +P K       L+EL + +N  + +    F GL+ 
Sbjct: 69  KISPGAFAPLVKLERLYLSKNQLKELPEKM---PKTLQELRVHENEITKVRKSVFNGLNQ 125

Query: 261 LKRLEITGASN-LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKEN 319
           +  +E+       + +  GAF     L  + +     + TI +G     P+L  L+L  N
Sbjct: 126 MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL---PPSLTELHLDGN 181

Query: 320 AFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN-SPAPLKYKSL 378
             T    + L                   +   L      R            P      
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 379 ISLSAEDLGCAGAGLTNISDNAFRG------LSGLRSLVLTDNRLQ--SIPTKQLSKLTR 430
             +  + +      ++ I  N F         +    + L  N +Q   I       +  
Sbjct: 242 KYI--QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299

Query: 431 LEELEI 436
              +++
Sbjct: 300 RAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 51/278 (18%), Positives = 97/278 (34%), Gaps = 17/278 (6%)

Query: 259 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKE 318
                L++   + +T ++ G F +  NL TL L  N K+  I  GA   L  L  L L +
Sbjct: 31  PDTALLDLQN-NKITEIKDGDFKNLKNLHTLILI-NNKISKISPGAFAPLVKLERLYLSK 88

Query: 319 NAFTSFSESMLAWP-ELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
           N      E M     ELR  +     +         + ++V   T+ +  +      ++ 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 148

Query: 378 LISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG 437
           +  LS   +  A   +T I          L  L L  N++  +    L  L  L +L + 
Sbjct: 149 MKKLSYIRI--ADTNITTIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 203

Query: 438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEED 497
            N  S ++ G      +L+ L +     +        AD+  ++ + L+ N  +  I  +
Sbjct: 204 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPG--GLADHKYIQVVYLHNN-NISAIGSN 260

Query: 498 ALVG------LPNLYHLNLKENAFTSFSESMLAWPELR 529
                       +   ++L  N    +      +  + 
Sbjct: 261 DFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 298

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 48/252 (19%), Positives = 87/252 (34%), Gaps = 36/252 (14%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD---- 180
           N+I+ I    F+ L  L  L L +N++  +   +F  L  L  L +  N    L +    
Sbjct: 41  NKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPK 100

Query: 181 -----------------GAFNGLGRLSALDLRGAGL--TNISDNAFRGLSGLRSLVLTDN 221
                              FNGL ++  ++L    L  + I + AF+G+  L  + + D 
Sbjct: 101 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT 160

Query: 222 RLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFA 281
            + +IP      LT   EL +  N  + ++A   KGL+ L +L ++  S           
Sbjct: 161 NITTIPQGLPPSLT---ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 282 DNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPE-------L 334
                E    N                  +  + L  N  ++   +    P         
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLA---DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 274

Query: 335 RTIDIAENPIEC 346
             + +  NP++ 
Sbjct: 275 SGVSLFSNPVQY 286

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 53.1 bits (126), Expect = 3e-08
 Identities = 35/174 (20%), Positives = 60/174 (34%), Gaps = 26/174 (14%)

Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
           C+  GL  +  +          L L +N++  I       L  L  L +  N  S +  G
Sbjct: 17  CSDLGLEKVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73

Query: 448 CFKGLSYLKRLEITGAS--------------------NLTRVRKGAFADNLNLETLTL-N 486
            F  L  L+RL ++                        +T+VRK  F     +  + L  
Sbjct: 74  AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT 133

Query: 487 KNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 540
              K   IE  A  G+  L ++ + +   T+  + +   P L  + +  N I  
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITK 185

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 5e-05
 Identities = 36/208 (17%), Positives = 61/208 (29%), Gaps = 26/208 (12%)

Query: 361 NTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSI 420
           +   V C+     K    +      L      +T I D  F+ L  L +L+L +N++  I
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI 70

Query: 421 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGAS---------------- 464
                + L +LE L + +N    L     K L  L+  E                     
Sbjct: 71  SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130

Query: 465 ------NLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSF 518
                   + +  GAF     L  + +     +  I +      P+L  L+L  N  T  
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLP---PSLTELHLDGNKITKV 186

Query: 519 SESMLAWPELRTIDIAENPIECGCNILW 546
             + L                   +   
Sbjct: 187 DAASLKGLNNLAKLGLSFNSISAVDNGS 214

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 7e-17
 Identities = 63/255 (24%), Positives = 97/255 (38%), Gaps = 7/255 (2%)

Query: 139 TALRILYLDDNQLRSVPTPSFIYLGML-AELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
            A + ++L  N++  VP  SF     L         +    A                 A
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
            L ++    F GL  L +L L    LQ +       L  L+ L +  N    L    F+ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
           L  L  L + G + ++ V + AF    +L+ L L++N     +   A   L  L  L L 
Sbjct: 152 LGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLF 209

Query: 318 ENAFTSFSESMLA-WPELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPLK 374
            N  ++     LA    L+ + + +NP  C C    L   L +   S+  V C+ P  L 
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLA 269

Query: 375 YKSLISLSAEDL-GC 388
            + L  L+A DL GC
Sbjct: 270 GRDLKRLAANDLQGC 284

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 3/190 (1%)

Query: 393 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGL 452
           L ++    F GL  L +L L    LQ +       L  L+ L +  N    L    F+ L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 453 SYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKE 512
             L  L + G + ++ V + AF    +L+ L L++N    +           +       
Sbjct: 153 GNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 513 NAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA--VFCNSPAPLKYK 570
           N     +E++     L+ + + +NP  C C    L   L +   S+  V C+ P  L  +
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGR 271

Query: 571 SLISLSAEDL 580
            L  L+A DL
Sbjct: 272 DLKRLAANDL 281

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 9e-11
 Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 21/241 (8%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGG 87
           + +  +  L  +P     + QR+ L  NRI  V +A                 L I    
Sbjct: 15  TTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAA----------SFRACRNLTILWLH 64

Query: 88  FEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLD 147
                       N            +    ++++    ++  +D A F GL  L  L+LD
Sbjct: 65  S-----------NVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 148 DNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAF 207
              L+ +    F  L  L  L +  N    L D  F  LG L+ L L G  ++++ + AF
Sbjct: 114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173

Query: 208 RGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT 267
           RGL  L  L+L  NR+  +       L RL  L +  N  S L       L  L+ L + 
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLN 233

Query: 268 G 268
            
Sbjct: 234 D 234

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (169), Expect = 7e-14
 Identities = 40/253 (15%), Positives = 72/253 (28%), Gaps = 11/253 (4%)

Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           + +   +  D   L ++P            L +  N+  T +        RL+ L+L   
Sbjct: 9   VASHLEVNCDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNLD-- 63

Query: 198 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKG 257
                     +    L  L   D     + +  L   T      +  +   +        
Sbjct: 64  ---RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 258 LSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLK 317
               +  E+    N  +                   N  L  +  G L GL NL  L L+
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 318 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKS 377
           EN+  +  +       L    +  NP  C C IL+ R  L     +         +K   
Sbjct: 181 ENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK--- 237

Query: 378 LISLSAEDLGCAG 390
            ++ +   + C  
Sbjct: 238 AMTSNVASVQCDN 250

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (153), Expect = 8e-12
 Identities = 37/226 (16%), Positives = 61/226 (26%), Gaps = 50/226 (22%)

Query: 388 CAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 447
           C    LT +  +  +       L L++N L +     L   TRL +L +  +   + +  
Sbjct: 17  CDKRNLTALPPDLPKDT---TILHLSENLLYTFSLATLMPYTRLTQLNL--DRAELTKLQ 71

Query: 448 CFKGLSYLKRLEITGA-------------------------------------------- 463
               L  L  L+++                                              
Sbjct: 72  VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYL 131

Query: 464 -SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESM 522
             N  +                   N  L  +    L GL NL  L L+EN+  +  +  
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 523 LAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLK 568
                L    +  NP  C C IL+ R  L     +         +K
Sbjct: 192 FGSHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVK 237

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 9e-10
 Identities = 50/196 (25%), Positives = 75/196 (38%), Gaps = 4/196 (2%)

Query: 30  NLQEANLDVIPSHSNPSIQRLVLSTNRIKTVD-SAIPIYLSLQHVDLSHTTWLIIPIGGF 88
           N  + NL  +P         L LS N + T   + +  Y  L  ++L       + + G 
Sbjct: 16  NCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGT 75

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
            P   L  L L+HN+     ++   +    V     NR++ +      GL  L+ LYL  
Sbjct: 76  LP--VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133

Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFR 208
           N+L+++P         L +L +  N  T L  G  NGL  L  L L+   L  I    F 
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF- 192

Query: 209 GLSGLRSLVLTDNRLQ 224
           G   L    L  N   
Sbjct: 193 GSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 44/274 (16%), Positives = 87/274 (31%), Gaps = 16/274 (5%)

Query: 227 PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL 286
           P  ++SK+    E+   +   + L     K       L ++  + L             L
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPPDLPKDT---TILHLSE-NLLYTFSLATLMPYTRL 57

Query: 287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIEC 346
             L L++    K   +G L  L  L   + +  +     +++ A   L         +  
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 347 GCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSG 406
           G          +    + +    P  L     +         A   LT +      GL  
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL----SLANNNLTELPAGLLNGLEN 173

Query: 407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNL 466
           L +L+L +N L +IP K       L    +  N +      C   + Y +R     A N+
Sbjct: 174 LDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNPWL-----CNCEILYFRRWLQDNAENV 227

Query: 467 TRVRKGAFADNL--NLETLTLNKNPKLKIIEEDA 498
              ++G     +  N+ ++  + + K  + +   
Sbjct: 228 YVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPG 261

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 37/181 (20%), Positives = 65/181 (35%), Gaps = 9/181 (4%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNL 272
            ++  T   L+ IP           EL +  N    +   G F  L +L +LE+      
Sbjct: 11  TTVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 273 TRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLA-W 331
                     +   E        K   I     +GL  L  LNL +N  +          
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 332 PELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDLGCA 389
             L ++++A NP  C C++ W  E L +++    A  C +P+ ++   +  L   +  C+
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEFKCS 185

Query: 390 G 390
            
Sbjct: 186 S 186

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 36/177 (20%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN-GFSMLEAGCFKGLSYLKRLEITGASNL 466
            ++  T   L+ IP           EL +  N    +   G F  L +L +LE+      
Sbjct: 11  TTVDCTGRGLKEIPR---DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT 67

Query: 467 TRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLA-W 525
                     +   E        K   I     +GL  L  LNL +N  +          
Sbjct: 68  GIEPNAFEGASHIQELQLGENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 526 PELRTIDIAENPIECGCNILWLREMLVRRN--TSAVFCNSPAPLKYKSLISLSAEDL 580
             L ++++A NP  C C++ W  E L +++    A  C +P+ ++   +  L   + 
Sbjct: 126 NSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 25/141 (17%), Positives = 39/141 (27%), Gaps = 21/141 (14%)

Query: 19  PSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHT 78
           P+       + +     L  IP         L+L+ N          +            
Sbjct: 3   PAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDN---------ELGRISSDGLFGRL 53

Query: 79  TWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGL 138
             L+                  +     +       S  +    G+N+I  I    F GL
Sbjct: 54  PHLVKLELKR------------NQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101

Query: 139 TALRILYLDDNQLRSVPTPSF 159
             L+ L L DNQ+  V   SF
Sbjct: 102 HQLKTLNLYDNQISCVMPGSF 122

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.8 bits (133), Expect = 7e-09
 Identities = 64/354 (18%), Positives = 123/354 (34%), Gaps = 32/354 (9%)

Query: 186 LGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
           L +++ L     G+ +I       L+ L  +  ++N+L  I    L  LT+L ++ +  N
Sbjct: 43  LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNN 98

Query: 246 GFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGAL 305
             + +             L     +++  ++     + L L + T++    L        
Sbjct: 99  QIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALS------- 151

Query: 306 VGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV 365
                     L      +  + +     L  +DI+ N +     +  L  +     T+  
Sbjct: 152 ---GLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 208

Query: 366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQL 425
             +        +L     ++L   G  L +I       L+ L  L L +N++ ++    L
Sbjct: 209 ISDITPLGILTNL-----DELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP--L 259

Query: 426 SKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL 485
           S LT+L EL++G N  S +       L+ L  L     +          ++  NL  LTL
Sbjct: 260 SGLTKLTELKLGANQISNISP-----LAGLTALTNLELNENQLEDISPISNLKNLTYLTL 314

Query: 486 NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 539
             N    I +   +  L  L  L    N  +  S S+     +  +    N I 
Sbjct: 315 YFN---NISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.9 bits (128), Expect = 2e-08
 Identities = 32/209 (15%), Positives = 68/209 (32%), Gaps = 36/209 (17%)

Query: 37  DVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVE 96
           D+ P     ++  L L+ N++K + + +    +L  +DL++       I    P   L +
Sbjct: 211 DITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ-----ISNLAPLSGLTK 264

Query: 97  LQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPT 156
           L            +  +     +     N     D +    L  L  L L  N +  +  
Sbjct: 265 LTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS- 323

Query: 157 PSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL 216
                                      + L +L  L      ++++S  +   L+ +  L
Sbjct: 324 -------------------------PVSSLTKLQRLFFANNKVSDVS--SLANLTNINWL 356

Query: 217 VLTDNRLQSIPTKQLSKLTRLEELEIGQN 245
               N++  +    L+ LTR+ +L +   
Sbjct: 357 SAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 18/200 (9%)

Query: 121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD 180
           I   N+IS I        T L  L L+ NQL+ +   +   L  L +L +  N  + LA 
Sbjct: 203 IATNNQISDITPLGIL--TNLDELSLNGNQLKDIG--TLASLTNLTDLDLANNQISNLAP 258

Query: 181 GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL 240
              +GL +L+ L L    ++NIS     GL+ L +L L +N+L+ I       L  L  L
Sbjct: 259 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPIS--NLKNLTYL 312

Query: 241 EIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTI 300
            +  N  S +       L+ L+RL     + ++ V   + A+  N+  L+   N ++  +
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFAN-NKVSDVS--SLANLTNINWLSAGHN-QISDL 366

Query: 301 EEGALVGLPNLYHLNLKENA 320
               L  L  +  L L + A
Sbjct: 367 TP--LANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 49.2 bits (116), Expect = 7e-07
 Identities = 70/349 (20%), Positives = 115/349 (32%), Gaps = 35/349 (10%)

Query: 125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFN 184
             I  ID    E L  L  +   +NQL  +       L  L ++ +  N    +   A  
Sbjct: 54  LGIKSID--GVEYLNNLTQINFSNNQLTDI--TPLKNLTKLVDILMNNNQIADITPLANL 109

Query: 185 GLGRL------------SALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLS 232
                               +L       +S N    +S L  L              L 
Sbjct: 110 TNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLK 169

Query: 233 KLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLN 292
            L  L  LE      + +               I   + ++ +       NL  + L+LN
Sbjct: 170 PLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL--DELSLN 227

Query: 293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILW 352
            N +LK I  G L  L NL  L+L  N  ++ +  +    +L  + +  N I    NI  
Sbjct: 228 GN-QLKDI--GTLASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGANQI---SNISP 280

Query: 353 LREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISD-NAFRGLSGLRSLV 411
           L  +    N               +L +L+   L        NISD +    L+ L+ L 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYF-----NNISDISPVSSLTKLQRLF 335

Query: 412 LTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI 460
             +N++  + +  L+ LT +  L  G N  S L       L+ + +L +
Sbjct: 336 FANNKVSDVSS--LANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 19/189 (10%)

Query: 19  PSRFSTRDPSCNLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSH 77
           P    T     +L    L  I + ++  ++  L L+ N+I  + + +     L  + L  
Sbjct: 214 PLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNL-APLSGLTKLTELKLGA 272

Query: 78  TTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEG 137
                I           +EL  N  +          +          N IS I       
Sbjct: 273 NQISNISPLAGLTALTNLELNENQLEDISPISNLKNL---TYLTLYFNNISDISP--VSS 327

Query: 138 LTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGA 197
           LT L+ L+  +N++  V   S   L  +  L  G N  + L       L R++ L L   
Sbjct: 328 LTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDLT--PLANLTRITQLGL--- 380

Query: 198 GLTNISDNA 206
                +D A
Sbjct: 381 -----NDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 4e-06
 Identities = 63/353 (17%), Positives = 112/353 (31%), Gaps = 53/353 (15%)

Query: 30  NLQEANLDVIPSHSN-PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGF 88
            L + N+    S ++   +  L      IK++D  +    +L  ++ S+       +   
Sbjct: 28  VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQ-----LTDI 81

Query: 89  EPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDD 148
            P + L +L      +     +  + +   +           D    + LT L  L L  
Sbjct: 82  TPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSS 141

Query: 149 NQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-----------------GAFNGLGRLSA 191
           N +  +   S +           +     LA+                      L  L +
Sbjct: 142 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLES 201

Query: 192 LDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 251
           L      +++I+       + L  L L  N+L+ I T  L+ LT L +L++  N  S L 
Sbjct: 202 LIATNNQISDITPLGIL--TNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLA 257

Query: 252 AGCFKGLSYLKRLEITGAS--------NLTRVRKGAFADN-----------LNLETLTLN 292
                GL+ L  L++             LT +      +N            NL  LTL 
Sbjct: 258 P--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLY 315

Query: 293 KNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIE 345
            N  +  I    +  L  L  L    N  +  S S+     +  +    N I 
Sbjct: 316 FN-NISDISP--VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQIS 364

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 39/206 (18%), Positives = 68/206 (33%), Gaps = 40/206 (19%)

Query: 309 PNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCN 368
            NL  L+L  N       ++ +   L  +D+A N I     +  L ++   +  +    N
Sbjct: 219 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN 277

Query: 369 SPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKL 428
                   +L +L   +             +    L  L  L L  N +  I    +S L
Sbjct: 278 ISPLAGLTALTNLELNENQL-------EDISPISNLKNLTYLTLYFNNISDIS--PVSSL 328

Query: 429 TRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKN 488
           T+L+ L    N  S                +++  +NLT           N+  L+   N
Sbjct: 329 TKLQRLFFANNKVS----------------DVSSLANLT-----------NINWLSAGHN 361

Query: 489 PKLKIIEEDALVGLPNLYHLNLKENA 514
              +I +   L  L  +  L L + A
Sbjct: 362 ---QISDLTPLANLTRITQLGLNDQA 384

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 44/209 (21%), Positives = 81/209 (38%), Gaps = 17/209 (8%)

Query: 134 CFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALD 193
               LT L  L   +NQ+  +     +    L EL +  N    +  G    L  L+ LD
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDI--GTLASLTNLTDLD 247

Query: 194 LRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAG 253
           L    ++N++     GL+ L  L L  N++ +I    L+ LT L  LE+ +N    +   
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDIS-- 301

Query: 254 CFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYH 313
               L  L  L +   +N++ +     +    L+ L    N K+  +    L  L N+  
Sbjct: 302 PISNLKNLTYLTLYF-NNISDI--SPVSSLTKLQRLFFANN-KVSDVSS--LANLTNINW 355

Query: 314 LNLKENAFTSFSESMLAWPELRTIDIAEN 342
           L+   N  +  +  +     +  + + + 
Sbjct: 356 LSAGHNQISDLTP-LANLTRITQLGLNDQ 383

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (123), Expect = 4e-08
 Identities = 31/221 (14%), Positives = 60/221 (27%), Gaps = 6/221 (2%)

Query: 28  SCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDSAIPIYLS------LQHVDLSHTTWL 81
               QE+ +  IPS    +   L     +++ +               +   D+      
Sbjct: 12  VFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 71

Query: 82  IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTAL 141
            +     +  E  +E   N     P+           +      +              L
Sbjct: 72  DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 131

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
             +  + N                  L +  N    + + AFNG             L  
Sbjct: 132 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEE 191

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
           + ++ F G SG   L ++  R+ S+P+  L  L +L     
Sbjct: 192 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 1e-06
 Identities = 26/225 (11%), Positives = 60/225 (26%), Gaps = 5/225 (2%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLK--RLEITGASN 271
           R  +  ++++  IP+          EL        +++ G F G   L+   +       
Sbjct: 11  RVFLCQESKVTEIPS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAW 331
           +      +    L+   +    N      E    +       ++            + + 
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 127

Query: 332 PELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGA 391
            ++         I       ++                          +   E       
Sbjct: 128 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNN 187

Query: 392 GLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 436
            L  + ++ F G SG   L ++  R+ S+P+  L  L +L     
Sbjct: 188 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 37/230 (16%), Positives = 66/230 (28%), Gaps = 9/230 (3%)

Query: 270 SNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESML 329
           S +T +         N   L      KL+ I++GA  G  +L  + + +N      E+ +
Sbjct: 18  SKVTEIPSDLPR---NAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV 73

Query: 330 AWPELR----TIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAED 385
                +     I+ A N +            L     S         +     +     D
Sbjct: 74  FSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD 133

Query: 386 LGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLE 445
           +       T   ++          L L  N +Q I     +     E      N    L 
Sbjct: 134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP 193

Query: 446 AGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIE 495
              F G S    L+I+  + +  +      +   L   +     KL  +E
Sbjct: 194 NDVFHGASGPVILDISR-TRIHSLPSYGLENLKKLRARSTYNLKKLPTLE 242

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.7 bits (105), Expect = 3e-06
 Identities = 27/113 (23%), Positives = 41/113 (36%), Gaps = 6/113 (5%)

Query: 408 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 467
           R L L    L  +    L +L  +  L++  N            L+ L+ LE+  AS+  
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54

Query: 468 RVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSE 520
                  A+   L+ L L  N   +      LV  P L  LNL+ N+      
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 6e-06
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 214 RSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLT 273
           R L L    L  +    L +L  +  L++  N            L+ L+ LE+  AS+  
Sbjct: 1   RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNA 54

Query: 274 RVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE 326
                  A+   L+ L L  N   ++     LV  P L  LNL+ N+      
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 107

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 28/125 (22%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTN 201
           R+L+L    L  +       L ++  L +  N    L       L  L  L      L N
Sbjct: 1   RVLHLAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 57

Query: 202 ISDNAFRGLSGLRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEAGCFKGLSY 260
           +   A      L+ L+L +NRLQ     + L    RL  L +  N     E    +    
Sbjct: 58  VDGVANL--PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

Query: 261 LKRLE 265
           L  + 
Sbjct: 116 LPSVS 120

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 28/112 (25%)

Query: 291 LNKNPKLKTIEEGALVGLPNLYHLNLK------------------------ENAFTSFSE 326
           +     L+ +E   L GL  L +L +                          NA  S S 
Sbjct: 38  IENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW 97

Query: 327 SMLAWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 374
             +    L+ + ++ NP+ C C + WL+              + C+   PL 
Sbjct: 98  KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 4e-05
 Identities = 35/169 (20%), Positives = 49/169 (28%), Gaps = 32/169 (18%)

Query: 405 SGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI-GQNGFSMLEAGCFKGLSYLKRLEITGA 463
            G   L  T +         L     L EL I  Q     LE    +GL  L+ L I  +
Sbjct: 8   HGSSGLRCTRDGALDSLH-HLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 464 SNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML 523
                                                  P L  LNL  NA  S S   +
Sbjct: 67  GLRFVAPDAFHFT--------------------------PRLSRLNLSFNALESLSWKTV 100

Query: 524 AWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLK 568
               L+ + ++ NP+ C C + WL+              + C+   PL 
Sbjct: 101 QGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLA 149

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 4e-05
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 33/142 (23%)

Query: 96  ELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVP 155
           EL  +       + + S +S     ++  N  S   ++  +   +L  L + +N+L  +P
Sbjct: 241 ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP 300

Query: 156 TPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS 215
                                           RL  L      L  + +        L+ 
Sbjct: 301 ----------------------------ALPPRLERLIASFNHLAEVPEL----PQNLKQ 328

Query: 216 LVLTDNRLQSIPTKQLSKLTRL 237
           L +  N L+  P      +  L
Sbjct: 329 LHVEYNPLREFP-DIPESVEDL 349

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.001
 Identities = 45/341 (13%), Positives = 92/341 (26%), Gaps = 46/341 (13%)

Query: 212 GLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASN 271
            L+   +T    +S+    L +   ++E+ +  N                       A  
Sbjct: 9   SLKLDAITTEDEKSVF-AVLLEDDSVKEIVLSGNTIG-----------------TEAARW 50

Query: 272 LTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA--LVGLPNLYHLNLKENAFTSFSESML 329
           L+       A   +LE    +     +  +E    L  L        K +       +  
Sbjct: 51  LSE----NIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 106

Query: 330 AWPELRTIDIAENPIECGCNILWLREMLVRRNTSAVFCNSPAPLKYKSLISLSAEDLGCA 389
              +   ID            L    +  +             +  K+  +     + C 
Sbjct: 107 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG 166

Query: 390 GAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELE-------------- 435
              L N S   +        L+ T   +Q+    +  +   LE L               
Sbjct: 167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT 226

Query: 436 ----IGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNP-- 489
                       L++        L    ++       V   +  +N+ L+TL L  N   
Sbjct: 227 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE 286

Query: 490 --KLKIIEEDALVGLPNLYHLNLKENAFTSFSESMLAWPEL 528
              ++ ++      +P+L  L L  N F+   + +    E+
Sbjct: 287 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREV 327

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 20/136 (14%), Positives = 42/136 (30%), Gaps = 1/136 (0%)

Query: 183 FNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEI 242
           +    R   LDLRG  +  I +N    L    ++  +DN ++ +    L +  +   +  
Sbjct: 14  YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNN 72

Query: 243 GQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEE 302
            +                   L       L  +   A   +L    +  N     K    
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 303 GALVGLPNLYHLNLKE 318
             +  +P +  L+ ++
Sbjct: 133 YVIYKVPQVRVLDFQK 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	581
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.96
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.95
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.79
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.78
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.77
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.69
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.64
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.59
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.5
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.44
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.3
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.99
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.97
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.69
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.65

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.6e-28  Score=229.79  Aligned_cols=246  Identities=24%  Similarity=0.386  Sum_probs=209.9

Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT  362 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~  362 (581)
                      .++++|++++| .++.++...|.++++|++++++++.+..++. .+.....++.+.+..+.                   
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~-------------------   91 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-------------------   91 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT-------------------
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc-------------------
Confidence            35778888888 6778877778888888888888888876655 33445666766654432                   


Q ss_pred             CceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcce
Q psy8551         363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS  442 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~  442 (581)
                                                   .+..+....|.++++|++|++++|.+.......+..+++|+.+++++|.++
T Consensus        92 -----------------------------~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~  142 (284)
T d1ozna_          92 -----------------------------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ  142 (284)
T ss_dssp             -----------------------------TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             -----------------------------ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc
Confidence                                         123445567888999999999999998888778888999999999999999


Q ss_pred             eeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeec-cc
Q psy8551         443 MLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFS-ES  521 (581)
Q Consensus       443 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~-~~  521 (581)
                      .+++..|..++.|++|++.+ +.++.+.+.+|.++++|+.+++++| .+..+.+..|.++++|++|++++|+++.++ ..
T Consensus       143 ~i~~~~f~~~~~L~~L~l~~-N~l~~l~~~~f~~l~~L~~l~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~  220 (284)
T d1ozna_         143 ALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA  220 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH
T ss_pred             ccChhHhccccchhhccccc-Ccccccchhhhccccccchhhhhhc-cccccChhHhhhhhhcccccccccccccccccc
Confidence            99888899999999999998 4788999999999999999999999 777888899999999999999999999876 56


Q ss_pred             cccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeCCCcccccccccccCcccc
Q psy8551         522 MLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCNSPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       522 ~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~~~~~~~~~~~~~~~~~~~  580 (581)
                      +..+++|++|++++||+.|+|.++|+..|+++.  ....++|..|..++|+++.+++++||
T Consensus       221 ~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p~~l~g~~l~~l~~~~l  281 (284)
T d1ozna_         221 LAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDL  281 (284)
T ss_dssp             HTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGS
T ss_pred             cccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCchHHcCCccccCCHHHC
Confidence            778999999999999999999999999999884  55677899999999999999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.4e-26  Score=222.12  Aligned_cols=246  Identities=22%  Similarity=0.363  Sum_probs=160.6

Q ss_pred             hhcCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCC
Q psy8551          10 RSKCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGF   88 (581)
Q Consensus        10 ~~~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~   88 (581)
                      .+.||..|.|..   ..+.|  ++.+++++|..+++++++|+|++|+|+.+|. .|.++++|++|++++|.+..+++.+|
T Consensus         1 ~~~~p~~c~c~~---~~~~C--~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f   75 (305)
T d1xkua_           1 GPVCPFRCQCHL---RVVQC--SDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF   75 (305)
T ss_dssp             CCCCCTTCEEET---TEEEC--TTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTT
T ss_pred             CCCCCCCCEecC---CEEEe--cCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhh
Confidence            368999999976   67999  9999999999999999999999999999986 79999999999999999999988899


Q ss_pred             CCCCcccEEeCCCCCC--CCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCc--ccCCcccccCcc
Q psy8551          89 EPQEKLVELQLNHNKH--FPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLR--SVPTPSFIYLGM  164 (581)
Q Consensus        89 ~~l~~L~~L~l~~n~~--~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~--~~~~~~~~~~~~  164 (581)
                      .++++|++|++++|.+  ++.....   ....| .+..|.+..+....+.....+..++...+...  ......+..+++
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~~~---~l~~L-~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~  151 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKMPK---TLQEL-RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK  151 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCT---TCCEE-ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTT
T ss_pred             hCCCccCEecccCCccCcCccchhh---hhhhh-hccccchhhhhhhhhhccccccccccccccccccCCCccccccccc
Confidence            9999999999999976  2221111   01111 23344555555555555555555555554322  222224445555


Q ss_pred             CcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCC
Q psy8551         165 LAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ  244 (581)
Q Consensus       165 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  244 (581)
                      |+++++++|.+..++..   .+++|+.|++.+|..+...+..+..++.++.|++++|.++.+++.++..+++|++|++++
T Consensus       152 L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~  228 (305)
T d1xkua_         152 LSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN  228 (305)
T ss_dssp             CCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS
T ss_pred             cCccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccc
Confidence            56666655555544322   234555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcccccCCcccCCCcccceeeecC
Q psy8551         245 NGFSMLEAGCFKGLSYLKRLEITG  268 (581)
Q Consensus       245 ~~~~~~~~~~~~~~~~L~~L~l~~  268 (581)
                      |+++.++. .+..+++|+.|++++
T Consensus       229 N~L~~lp~-~l~~l~~L~~L~Ls~  251 (305)
T d1xkua_         229 NKLVKVPG-GLADHKYIQVVYLHN  251 (305)
T ss_dssp             SCCSSCCT-TTTTCSSCCEEECCS
T ss_pred             cccccccc-ccccccCCCEEECCC
Confidence            55554432 344444555555444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-27  Score=224.22  Aligned_cols=234  Identities=27%  Similarity=0.379  Sum_probs=205.7

Q ss_pred             cCCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551          12 KCMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEP   90 (581)
Q Consensus        12 ~~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~   90 (581)
                      .||..|.|.......+.|  ++.++++||..+|+++++|+|++|+|+.+|. .|.++++|++|++++|++..++...+..
T Consensus         1 ~cp~~C~C~~~~~~~v~c--~~~~L~~iP~~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~   78 (284)
T d1ozna_           1 PCPGACVCYNEPKVTTSC--PQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG   78 (284)
T ss_dssp             CCCTTCEEECSSSCEEEC--CSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred             CcCCCCEEcCCCCeEEEc--CCCCCCccCCCCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccc
Confidence            599999997545667889  9999999999999999999999999999986 7999999999999999999999999999


Q ss_pred             CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551          91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  170 (581)
Q Consensus        91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L  170 (581)
                      +..++.+....+.                      .++.+.+..|+++++|++|++++|.+..+....+....+|+.+++
T Consensus        79 ~~~~~~l~~~~~~----------------------~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l  136 (284)
T d1ozna_          79 LALLEQLDLSDNA----------------------QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYL  136 (284)
T ss_dssp             CTTCCEEECCSCT----------------------TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccccccccccccc----------------------ccccccchhhcccccCCEEecCCcccccccccccchhcccchhhh
Confidence            9999999887653                      355666777899999999999999998888777888899999999


Q ss_pred             CCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccccc
Q psy8551         171 GLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  250 (581)
Q Consensus       171 ~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~  250 (581)
                      ++|.++.+++..|..+++|+.|++++|++..+.+..|..+++|+.+++.+|+++.+.+..|..+++|++|++++|.+..+
T Consensus       137 ~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         137 QDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence            99999988888888899999999999999988888888999999999999999988878899999999999999998888


Q ss_pred             CCcccCCCcccceeeecCC
Q psy8551         251 EAGCFKGLSYLKRLEITGA  269 (581)
Q Consensus       251 ~~~~~~~~~~L~~L~l~~~  269 (581)
                      ++..|..+++|+.+++++|
T Consensus       217 ~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         217 PTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CHHHHTTCTTCCEEECCSS
T ss_pred             cccccccccccCEEEecCC
Confidence            7777777777777776665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.2e-25  Score=210.56  Aligned_cols=212  Identities=26%  Similarity=0.405  Sum_probs=166.0

Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccc-cccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCC
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSE-SMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTS  363 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~  363 (581)
                      .+.+++.+++ .++.+|.. +.  +++++|++++|.++.++. .+..+++|++|++++|.+..                 
T Consensus        11 ~~~~v~C~~~-~L~~iP~~-lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-----------------   69 (266)
T d1p9ag_          11 SHLEVNCDKR-NLTALPPD-LP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-----------------   69 (266)
T ss_dssp             TCCEEECTTS-CCSSCCSC-CC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-----------------
T ss_pred             CCeEEEccCC-CCCeeCcC-cC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-----------------
Confidence            3444555555 45555542 21  357777777777776664 45667777777777775531                 


Q ss_pred             ceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee
Q psy8551         364 AVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM  443 (581)
Q Consensus       364 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~  443 (581)
                                                      ++  .+..+++|++|++++|+++..+ ..+..+++|++|+++++.+..
T Consensus        70 --------------------------------l~--~~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~l~~~~~~~  114 (266)
T d1p9ag_          70 --------------------------------LQ--VDGTLPVLGTLDLSHNQLQSLP-LLGQTLPALTVLDVSFNRLTS  114 (266)
T ss_dssp             --------------------------------EE--CCSCCTTCCEEECCSSCCSSCC-CCTTTCTTCCEEECCSSCCCC
T ss_pred             --------------------------------cc--cccccccccccccccccccccc-cccccccccccccccccccce
Confidence                                            11  1234677888888888877665 457778888888888888888


Q ss_pred             eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcceeeccccc
Q psy8551         444 LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSESML  523 (581)
Q Consensus       444 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~  523 (581)
                      .....+..+.++++|++.+ +.+..+.+..+..+++|+.+++++| .+..+++..+..+++|++|+|++|+|+.+|+.+.
T Consensus       115 ~~~~~~~~l~~l~~L~l~~-n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~  192 (266)
T d1p9ag_         115 LPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF  192 (266)
T ss_dssp             CCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             eeccccccccccccccccc-cccceeccccccccccchhcccccc-cccccCccccccccccceeecccCCCcccChhHC
Confidence            7777788888888888887 4677777788888999999999999 8888888889999999999999999999999999


Q ss_pred             cCCcceEEecCCCcccccCchhHHHHHHhhc
Q psy8551         524 AWPELRTIDIAENPIECGCNILWLREMLVRR  554 (581)
Q Consensus       524 ~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~  554 (581)
                      .+++|+.|+++||||.|+|+++||.+|+++.
T Consensus       193 ~~~~L~~L~L~~Np~~CdC~~~~l~~wl~~~  223 (266)
T d1p9ag_         193 GSHLLPFAFLHGNPWLCNCEILYFRRWLQDN  223 (266)
T ss_dssp             TTCCCSEEECCSCCBCCSGGGHHHHHHHHHT
T ss_pred             CCCCCCEEEecCCCCCCCcchHHHHHHHHhc
Confidence            9999999999999999999999999999763

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=7.6e-25  Score=217.56  Aligned_cols=323  Identities=24%  Similarity=0.373  Sum_probs=236.4

Q ss_pred             CCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEE
Q psy8551         137 GLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSL  216 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L  216 (581)
                      .+.+|++|++++++|+.+.  .+..+++|++|++++|.++++++  +.++++|++|++++|.+..+.+  +..+++|+.|
T Consensus        42 ~l~~l~~L~l~~~~I~~l~--gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred             HhCCCCEEECCCCCCCCcc--ccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc--cccccccccc
Confidence            4567999999999998874  57789999999999999988864  8899999999999999887654  7889999999


Q ss_pred             ECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccC-------------------CCcccceeeecCCCCceeecC
Q psy8551         217 VLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFK-------------------GLSYLKRLEITGASNLTRVRK  277 (581)
Q Consensus       217 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-------------------~~~~L~~L~l~~~~~~~~~~~  277 (581)
                      ++.++.++.+..  ......+.......+.+.........                   ............+   .....
T Consensus       116 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  190 (384)
T d2omza2         116 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN---KVSDI  190 (384)
T ss_dssp             ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS---CCCCC
T ss_pred             cccccccccccc--ccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccc---ccccc
Confidence            999998887653  33445566666555544332221111                   1111111111111   11112


Q ss_pred             ccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHH
Q psy8551         278 GAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREML  357 (581)
Q Consensus       278 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  357 (581)
                      ..+..+++++.++++++ .+..+.+  +..+++|+++++++|.++.++ .+..+++|+.+++++|.+..           
T Consensus       191 ~~~~~l~~~~~l~l~~n-~i~~~~~--~~~~~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~-----------  255 (384)
T d2omza2         191 SVLAKLTNLESLIATNN-QISDITP--LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISN-----------  255 (384)
T ss_dssp             GGGGGCTTCSEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-----------
T ss_pred             cccccccccceeeccCC-ccCCCCc--ccccCCCCEEECCCCCCCCcc-hhhcccccchhccccCccCC-----------
Confidence            23445667777888777 4555543  455677888888888777654 45567778888887776531           


Q ss_pred             hhcCCCceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecC
Q psy8551         358 VRRNTSAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIG  437 (581)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  437 (581)
                                                            +  ..+..+++|++|+++++++++.++  +..++.++.+.+.
T Consensus       256 --------------------------------------~--~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~l~~l~~~  293 (384)
T d2omza2         256 --------------------------------------L--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELN  293 (384)
T ss_dssp             --------------------------------------C--GGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECC
T ss_pred             --------------------------------------C--CcccccccCCEeeccCcccCCCCc--ccccccccccccc
Confidence                                                  1  135668899999999999987753  7789999999999


Q ss_pred             CCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCccee
Q psy8551         438 QNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFTS  517 (581)
Q Consensus       438 ~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~  517 (581)
                      .+.+++..  .+..+++++.|++++| .+.++.  .+..+++|++|++++| .++.++  .++++++|++|++++|++++
T Consensus       294 ~n~l~~~~--~~~~~~~l~~L~ls~n-~l~~l~--~l~~l~~L~~L~L~~n-~l~~l~--~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         294 ENQLEDIS--PISNLKNLTYLTLYFN-NISDIS--PVSSLTKLQRLFFANN-KVSDVS--SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             SSCCSCCG--GGGGCTTCSEEECCSS-CCSCCG--GGGGCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSSCCCB
T ss_pred             cccccccc--ccchhcccCeEECCCC-CCCCCc--ccccCCCCCEEECCCC-CCCCCh--hHcCCCCCCEEECCCCcCCC
Confidence            99888653  3778899999999985 666654  3788899999999999 777774  48899999999999999998


Q ss_pred             eccccccCCcceEEecCCC
Q psy8551         518 FSESMLAWPELRTIDIAEN  536 (581)
Q Consensus       518 l~~~~~~~~~L~~L~l~~n  536 (581)
                      +++ +..+++|++|++++|
T Consensus       366 l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         366 LTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG-GTTCTTCSEEECCCE
T ss_pred             Chh-hccCCCCCEeeCCCC
Confidence            875 788999999999987

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2e-24  Score=214.47  Aligned_cols=340  Identities=25%  Similarity=0.353  Sum_probs=194.0

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .++++|+++++.|++++ .+.++++|++|++++|+|+.+++  +.++++|++|++++|.+                    
T Consensus        44 ~~l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i--------------------  100 (384)
T d2omza2          44 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--------------------  100 (384)
T ss_dssp             TTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred             CCCCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCcc--ccCCccccccccccccc--------------------
Confidence            46777777777777663 46667777777777777776653  66677777777777653                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         .++.  .++++++|+.|+++++.++....  ......+.......+.+........................     
T Consensus       101 ---~~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----  168 (384)
T d2omza2         101 ---ADIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDL-----  168 (384)
T ss_dssp             ---CCCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCC-----
T ss_pred             ---cccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccchh-----
Confidence               2221  15566677777776666655443  22334444554444444332221111111111111111111     


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNL  284 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  284 (581)
                      ..+.............+.....  ..+..+++++.+++++|.++.+.+  +                         ...+
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~l~l~~n~i~~~~~--~-------------------------~~~~  219 (384)
T d2omza2         169 KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--L-------------------------GILT  219 (384)
T ss_dssp             GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G-------------------------GGCT
T ss_pred             hhhccccccccccccccccccc--cccccccccceeeccCCccCCCCc--c-------------------------cccC
Confidence            1122233333334433332222  224445556666666555443322  1                         2234


Q ss_pred             CCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCc
Q psy8551         285 NLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSA  364 (581)
Q Consensus       285 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~  364 (581)
                      +|+++++++| .+.+++  .+..+++|+.+++.+|.++.+++ +..+++|++++++++.+..                  
T Consensus       220 ~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~~~l~~------------------  277 (384)
T d2omza2         220 NLDELSLNGN-QLKDIG--TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN------------------  277 (384)
T ss_dssp             TCCEEECCSS-CCCCCG--GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCCC------------------
T ss_pred             CCCEEECCCC-CCCCcc--hhhcccccchhccccCccCCCCc-ccccccCCEeeccCcccCC------------------
Confidence            4555555555 344443  35566667777777776665543 4556677777776665431                  


Q ss_pred             eeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551         365 VFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  444 (581)
Q Consensus       365 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  444 (581)
                                                     +  ..+.+++.++.+++.+|.+++..  .+..+++++.|++++|++++.
T Consensus       278 -------------------------------~--~~~~~~~~l~~l~~~~n~l~~~~--~~~~~~~l~~L~ls~n~l~~l  322 (384)
T d2omza2         278 -------------------------------I--SPLAGLTALTNLELNENQLEDIS--PISNLKNLTYLTLYFNNISDI  322 (384)
T ss_dssp             -------------------------------C--GGGTTCTTCSEEECCSSCCSCCG--GGGGCTTCSEEECCSSCCSCC
T ss_pred             -------------------------------C--Ccccccccccccccccccccccc--ccchhcccCeEECCCCCCCCC
Confidence                                           0  12344666777777777776643  366777777777777777765


Q ss_pred             ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCC
Q psy8551         445 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN  513 (581)
Q Consensus       445 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n  513 (581)
                      .+  +..+++|++|++++| .++.+.  .+.++++|++|++++| .+..+++  +.++++|++|+|++|
T Consensus       323 ~~--l~~l~~L~~L~L~~n-~l~~l~--~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         323 SP--VSSLTKLQRLFFANN-KVSDVS--SLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             GG--GGGCTTCCEEECCSS-CCCCCG--GGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCCE
T ss_pred             cc--cccCCCCCEEECCCC-CCCCCh--hHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCCC
Confidence            43  667777888888775 555543  4777888888888888 6666654  788899999999887

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=196.27  Aligned_cols=203  Identities=26%  Similarity=0.318  Sum_probs=176.8

Q ss_pred             CCCCCC-ccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCceeecCCCCCCCCCcc
Q psy8551          17 YEPSRF-STRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKL   94 (581)
Q Consensus        17 c~~~~~-~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L   94 (581)
                      |.|... +..+|.|  ++.++++||..+|+++++|+|++|.|+.++. .|.++++|++|+|++|+|+.++.  +..+++|
T Consensus         4 C~~~~~~~~~~v~C--~~~~L~~iP~~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~--~~~l~~L   79 (266)
T d1p9ag_           4 CEVSKVASHLEVNC--DKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL   79 (266)
T ss_dssp             SEEECSTTCCEEEC--TTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred             cEEcccCCCeEEEc--cCCCCCeeCcCcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc--ccccccc
Confidence            566554 4566899  9999999999999999999999999999985 78999999999999999999874  5788999


Q ss_pred             cEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCc
Q psy8551          95 VELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNV  174 (581)
Q Consensus        95 ~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~  174 (581)
                      ++|++++|.+                       +.. +..+..+++|+.|+++++.+..++...+..+.++++|++++|.
T Consensus        80 ~~L~Ls~N~l-----------------------~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~  135 (266)
T d1p9ag_          80 GTLDLSHNQL-----------------------QSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE  135 (266)
T ss_dssp             CEEECCSSCC-----------------------SSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC
T ss_pred             cccccccccc-----------------------ccc-ccccccccccccccccccccceeeccccccccccccccccccc
Confidence            9999999874                       222 2236788999999999999999888888889999999999999


Q ss_pred             ceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCccc
Q psy8551         175 FTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFS  248 (581)
Q Consensus       175 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~  248 (581)
                      +..+++..+..+++++.+++++|+++.+.+..|..+++|++|++++|+++.+|. .+..+++|+.|++++|++.
T Consensus       136 l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~-~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         136 LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPK-GFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCCCSEEECCSCCBC
T ss_pred             cceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccCh-hHCCCCCCCEEEecCCCCC
Confidence            999888888889999999999999999888888899999999999999998885 4556889999999998754

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.1e-22  Score=192.71  Aligned_cols=266  Identities=27%  Similarity=0.422  Sum_probs=226.1

Q ss_pred             CccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcc
Q psy8551          46 SIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQN  125 (581)
Q Consensus        46 ~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~  125 (581)
                      ..+.++-++..++.+|..+.  +++++|++++|+|+.++..+|.++++|++|++++|.                      
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~----------------------   66 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK----------------------   66 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC----------------------
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccc----------------------
Confidence            67788999999999998663  789999999999999998899999999999999986                      


Q ss_pred             cccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCcc--ccC
Q psy8551         126 RISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT--NIS  203 (581)
Q Consensus       126 ~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~--~~~  203 (581)
                       +..+.+.+|.++++|++|++++|+++.++..   ....++.|.+..|.+..+....+.....++.++...+...  ...
T Consensus        67 -~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~---~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~  142 (305)
T d1xkua_          67 -ISKISPGAFAPLVKLERLYLSKNQLKELPEK---MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE  142 (305)
T ss_dssp             -CCCBCTTTTTTCTTCCEEECCSSCCSBCCSS---CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC
T ss_pred             -ccccchhhhhCCCccCEecccCCccCcCccc---hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCC
Confidence             4556677799999999999999999988763   2467889999999998887766777888889998877433  333


Q ss_pred             ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCC
Q psy8551         204 DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADN  283 (581)
Q Consensus       204 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  283 (581)
                      ...+..+++|+.+++.+|.++.++..   .+++|++|++++|......+..+..++.++.|.++++ .+..+....+..+
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l  218 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANT  218 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGS
T ss_pred             ccccccccccCccccccCCccccCcc---cCCccCEEECCCCcCCCCChhHhhccccccccccccc-ccccccccccccc
Confidence            45677889999999999999988743   3578999999999999888888999999999999886 7788888889999


Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCcccccc-------ccCCCCcceEEccCCCCc
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSES-------MLAWPELRTIDIAENPIE  345 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-------~~~~~~L~~L~l~~~~~~  345 (581)
                      ++|++|++++| .+..++. .+..+++|+.|++++|+++.++..       ......|+.+++.+|++.
T Consensus       219 ~~L~~L~L~~N-~L~~lp~-~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         219 PHLRELHLNNN-KLVKVPG-GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCCEEECCSS-CCSSCCT-TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccceeeecccc-ccccccc-ccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            99999999999 7888876 688999999999999999987642       234578999999999875

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.89  E-value=4.3e-23  Score=198.28  Aligned_cols=249  Identities=18%  Similarity=0.193  Sum_probs=174.6

Q ss_pred             cCccEEEcccCCcc---cccccccCCCcccEEEcCC-Ccee-ecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccc
Q psy8551          45 PSIQRLVLSTNRIK---TVDSAIPIYLSLQHVDLSH-TTWL-IIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRV  119 (581)
Q Consensus        45 ~~l~~L~L~~~~i~---~l~~~~~~~~~L~~L~ls~-~~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L  119 (581)
                      .++++|+|+++.+.   .+|..+.++++|++|+|++ |++. .+| ..+.++++|++|++++|.                
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP-~~i~~L~~L~~L~Ls~N~----------------  112 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP-PAIAKLTQLHYLYITHTN----------------  112 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC-GGGGGCTTCSEEEEEEEC----------------
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc-cccccccccchhhhcccc----------------
Confidence            48999999999887   4788999999999999986 6777 454 568888888888888875                


Q ss_pred             cccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCC-cEEEcCCCC
Q psy8551         120 EIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRL-SALDLRGAG  198 (581)
Q Consensus       120 ~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L-~~L~L~~~~  198 (581)
                             +..+.+..+..+..|+.+++++|.+....+..+..+++++++++++|.+.+..+..+..+..+ +.+++.+|+
T Consensus       113 -------l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         113 -------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             -------CEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             -------ccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccc
Confidence                   344445556777888888888887776665677778888888888887776655555555554 667777777


Q ss_pred             ccccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCc
Q psy8551         199 LTNISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKG  278 (581)
Q Consensus       199 l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  278 (581)
                      +++..+..+..+.. ..+++..+......+..+..+++++.++++++.+...++                          
T Consensus       186 l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~--------------------------  238 (313)
T d1ogqa_         186 LTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------------------------  238 (313)
T ss_dssp             EEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG--------------------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccccccccccc--------------------------
Confidence            76666555554433 356666666655555556666666666666665543322                          


Q ss_pred             cCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCCCcc
Q psy8551         279 AFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIEC  346 (581)
Q Consensus       279 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~  346 (581)
                      .+...++|+.|++++|...+.+|. .++++++|++|++++|+++ .+| .+..+++|+.+++.+|+.-|
T Consensus       239 ~~~~~~~L~~L~Ls~N~l~g~iP~-~l~~L~~L~~L~Ls~N~l~g~iP-~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         239 KVGLSKNLNGLDLRNNRIYGTLPQ-GLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             GCCCCTTCCEEECCSSCCEECCCG-GGGGCTTCCEEECCSSEEEEECC-CSTTGGGSCGGGTCSSSEEE
T ss_pred             ccccccccccccCccCeecccCCh-HHhCCCCCCEEECcCCcccccCC-CcccCCCCCHHHhCCCcccc
Confidence            233445677777777744445655 5778888888888888887 454 45667788888888886543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.5e-21  Score=180.01  Aligned_cols=228  Identities=20%  Similarity=0.296  Sum_probs=184.9

Q ss_pred             CCCC-CCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCcccccc-cccCCCcccEEEcCCCcee-ecCCCCCC
Q psy8551          13 CMNP-YEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKTVDS-AIPIYLSLQHVDLSHTTWL-IIPIGGFE   89 (581)
Q Consensus        13 ~~~~-c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~l~~-~~~~~~~L~~L~ls~~~l~-~~~~~~~~   89 (581)
                      |+.. |.|..   +.+.|  ++.+++++|..+++++++|+|++|.|+.+|. .|.++++|++|++++|.+. .++..+|.
T Consensus         1 ~~~~~C~C~~---~~i~c--~~~~l~~iP~~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~   75 (242)
T d1xwdc1           1 CHHRICHCSN---RVFLC--QESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFS   75 (242)
T ss_dssp             CCCSSEEECS---SEEEE--ESCSCSSCCSCSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEE
T ss_pred             CcCCcCCCcC---CEEEE--eCCCCCCcCCCCCCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccc
Confidence            5544 88876   68999  9999999999999999999999999999986 6899999999999999876 46777899


Q ss_pred             CCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcc-cccCccCcEE
Q psy8551          90 PQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPS-FIYLGMLAEL  168 (581)
Q Consensus        90 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~-~~~~~~L~~L  168 (581)
                      ++++++++.+..+.                      .+....+..|.++++|++++++++.+...+... +..+..+..+
T Consensus        76 ~l~~l~~l~~~~~n----------------------~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~  133 (242)
T d1xwdc1          76 NLPKLHEIRIEKAN----------------------NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLD  133 (242)
T ss_dssp             SCTTCCEEEEECCT----------------------TCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEE
T ss_pred             cccccccccccccc----------------------cccccccccccccccccccccchhhhcccccccccccccccccc
Confidence            99999999887643                      255566677899999999999999988765432 3445666666


Q ss_pred             ECCCCcceeccCCcCCCCC-CCcEEEcCCCCccccCccccCCCCCCcEE-ECCCCcCCccCccccCCCCCCCEEECCCCc
Q psy8551         169 RVGLNVFTTLADGAFNGLG-RLSALDLRGAGLTNISDNAFRGLSGLRSL-VLTDNRLQSIPTKQLSKLTRLEELEIGQNG  246 (581)
Q Consensus       169 ~L~~n~~~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~  246 (581)
                      ...++.+..+....+.+++ .++.+++.+++++.+....+. ..++..+ .+.+|+++.++...|..+++|++|++++|+
T Consensus       134 ~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         134 IQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             EESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            7777788888777777764 789999999999988776554 4455444 578889999988889999999999999999


Q ss_pred             ccccCCcccCCCcccceeeecC
Q psy8551         247 FSMLEAGCFKGLSYLKRLEITG  268 (581)
Q Consensus       247 ~~~~~~~~~~~~~~L~~L~l~~  268 (581)
                      ++.++...|.+++.|+.+++.+
T Consensus       213 l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         213 IHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             CCCCCSSSCTTCCEEESSSEES
T ss_pred             CCccCHHHHcCCcccccCcCCC
Confidence            9988887788877777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=3.2e-21  Score=170.25  Aligned_cols=169  Identities=26%  Similarity=0.476  Sum_probs=146.9

Q ss_pred             CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCccee-eccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeC
Q psy8551         407 LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSM-LEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTL  485 (581)
Q Consensus       407 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l  485 (581)
                      .+.++.++++++.+|.. +  .+++++|+|++|.++. .....|..+++|++|++++ +.+..+.+..|..+++|++|++
T Consensus        10 ~~~v~Cs~~~L~~iP~~-l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcCccCCC-C--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccc-cccccccccccccccccceeee
Confidence            45788888888888742 3  2678899999999975 5677788899999999987 5777888888999999999999


Q ss_pred             CCCCCceeecCCccCCCCCccEEEcCCCcceeeccc-cccCCcceEEecCCCcccccCchhHHHHHHhhc--CCCceeeC
Q psy8551         486 NKNPKLKIIEEDALVGLPNLYHLNLKENAFTSFSES-MLAWPELRTIDIAENPIECGCNILWLREMLVRR--NTSAVFCN  562 (581)
Q Consensus       486 ~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~--~~~~~~c~  562 (581)
                      ++| .+..+++..|.++++|++|+|++|.|+.+++. +..+++|+++++++||+.|+|++.|+.+|++..  ....++|.
T Consensus        86 s~N-~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~  164 (192)
T d1w8aa_          86 GEN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCG  164 (192)
T ss_dssp             CSC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBC
T ss_pred             ccc-cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeC
Confidence            999 89999999999999999999999999998754 668999999999999999999999999998773  45667899


Q ss_pred             CCcccccccccccCcccc
Q psy8551         563 SPAPLKYKSLISLSAEDL  580 (581)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~  580 (581)
                      .|..++|..+.+++.+++
T Consensus       165 ~p~~l~~~~l~~L~~n~l  182 (192)
T d1w8aa_         165 APSKVRDVQIKDLPHSEF  182 (192)
T ss_dssp             SSTTTTTSBGGGSCTTTC
T ss_pred             CChhhcCCEeeecCHhhC
Confidence            999999999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=9.4e-21  Score=181.71  Aligned_cols=253  Identities=22%  Similarity=0.249  Sum_probs=162.0

Q ss_pred             CCCcEEECCCCcCCc---cCccccCCCCCCCEEECCC-CcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCC
Q psy8551         211 SGLRSLVLTDNRLQS---IPTKQLSKLTRLEELEIGQ-NGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNL  286 (581)
Q Consensus       211 ~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L  286 (581)
                      .+++.|+++++.+++   +| ..++++++|++|++++ |.+.+..+..++++++|++|++++| .+....+..+.....|
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp-~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~~~~L  127 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIP-SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECC-GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGGCTTC
T ss_pred             EEEEEEECCCCCCCCCCCCC-hHHhcCccccccccccccccccccccccccccccchhhhccc-cccccccccccchhhh
Confidence            357788888887774   34 5678888888888875 6666544555666666666666654 2333333334444444


Q ss_pred             CEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCCCce
Q psy8551         287 ETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNTSAV  365 (581)
Q Consensus       287 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~~~~  365 (581)
                      +.                         ++++.|.+. .+|..+..++.++.+++++|.+.+.                  
T Consensus       128 ~~-------------------------l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~------------------  164 (313)
T d1ogqa_         128 VT-------------------------LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA------------------  164 (313)
T ss_dssp             CE-------------------------EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEE------------------
T ss_pred             cc-------------------------cccccccccccCchhhccCcccceeeccccccccc------------------
Confidence            44                         444444433 2334444555555555555443210                  


Q ss_pred             eecCCCcccccccccCCccccccCCCCccccCccccCCCCC-CCEEEcCCCcCCccChhhhcCCCCCcEeecCCCcceee
Q psy8551         366 FCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSG-LRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSML  444 (581)
Q Consensus       366 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~-L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~i~~~  444 (581)
                                                    ++ ..+..+.. ++.+++++|++++..+..+..+..+ .+++.++...+.
T Consensus       165 ------------------------------ip-~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~  212 (313)
T d1ogqa_         165 ------------------------------IP-DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGD  212 (313)
T ss_dssp             ------------------------------CC-GGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEEC
T ss_pred             ------------------------------cc-cccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence                                          01 11112222 3666667777766665556555444 577777777777


Q ss_pred             ccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCCcce-eeccccc
Q psy8551         445 EAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKENAFT-SFSESML  523 (581)
Q Consensus       445 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~  523 (581)
                      .+..+..+++++.+++.++ .+.... ..+..+++|+.|++++|+..+.+ |..++++++|++|+|++|+|+ .+| .+.
T Consensus       213 ~~~~~~~~~~l~~l~~~~~-~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~i-P~~l~~L~~L~~L~Ls~N~l~g~iP-~~~  288 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKN-SLAFDL-GKVGLSKNLNGLDLRNNRIYGTL-PQGLTQLKFLHSLNVSFNNLCGEIP-QGG  288 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSS-EECCBG-GGCCCCTTCCEEECCSSCCEECC-CGGGGGCTTCCEEECCSSEEEEECC-CST
T ss_pred             ccccccccccccccccccc-cccccc-cccccccccccccCccCeecccC-ChHHhCCCCCCEEECcCCcccccCC-Ccc
Confidence            7777777778888887764 333332 34677889999999999444466 466899999999999999999 566 457


Q ss_pred             cCCcceEEecCCCcccccCch
Q psy8551         524 AWPELRTIDIAENPIECGCNI  544 (581)
Q Consensus       524 ~~~~L~~L~l~~np~~c~c~~  544 (581)
                      .+.+|+.+++++|+..|+.++
T Consensus       289 ~L~~L~~l~l~~N~~l~g~pl  309 (313)
T d1ogqa_         289 NLQRFDVSAYANNKCLCGSPL  309 (313)
T ss_dssp             TGGGSCGGGTCSSSEEESTTS
T ss_pred             cCCCCCHHHhCCCccccCCCC
Confidence            788999999999998887654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.79  E-value=2e-19  Score=158.57  Aligned_cols=136  Identities=28%  Similarity=0.352  Sum_probs=111.7

Q ss_pred             CCCCCCCCCCccCCCccccccCCCccCCCCCCcCccEEEcccCCccc-cc-ccccCCCcccEEEcCCCceeecCCCCCCC
Q psy8551          13 CMNPYEPSRFSTRDPSCNLQEANLDVIPSHSNPSIQRLVLSTNRIKT-VD-SAIPIYLSLQHVDLSHTTWLIIPIGGFEP   90 (581)
Q Consensus        13 ~~~~c~~~~~~~~~~~c~~~~~~l~~ip~~~~~~l~~L~L~~~~i~~-l~-~~~~~~~~L~~L~ls~~~l~~~~~~~~~~   90 (581)
                      ||..|+|..   +.+.|  ++.++++||..+|+++++|+|++|+|+. ++ ..|.++++|++|++++|.+..++...|..
T Consensus         2 CP~~C~C~~---~~v~C--s~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~   76 (192)
T d1w8aa_           2 CPAMCHCEG---TTVDC--TGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG   76 (192)
T ss_dssp             CCTTSEEET---TEEEC--TTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT
T ss_pred             cCCCCEEcC---CEEEE--eCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc
Confidence            999999987   68999  9999999999999999999999999975 43 46788999999999999998888888888


Q ss_pred             CCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEEC
Q psy8551          91 QEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRV  170 (581)
Q Consensus        91 l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L  170 (581)
                      +++|++|++++|.                       ++.+++.+|.++++|++|++++|.++.++..+|..+++|++|+|
T Consensus        77 ~~~L~~L~Ls~N~-----------------------l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          77 ASHIQELQLGENK-----------------------IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL  133 (192)
T ss_dssp             CTTCCEEECCSCC-----------------------CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred             ccccceeeecccc-----------------------ccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccc
Confidence            8888888888875                       45566666777777777777777777777766777777777777


Q ss_pred             CCCcce
Q psy8551         171 GLNVFT  176 (581)
Q Consensus       171 ~~n~~~  176 (581)
                      ++|.+.
T Consensus       134 ~~N~~~  139 (192)
T d1w8aa_         134 ASNPFN  139 (192)
T ss_dssp             TTCCBC
T ss_pred             cccccc
Confidence            776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4.5e-19  Score=149.57  Aligned_cols=141  Identities=24%  Similarity=0.337  Sum_probs=114.7

Q ss_pred             cEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcC
Q psy8551         432 EELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLK  511 (581)
Q Consensus       432 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~  511 (581)
                      +.++++++.+... +..+..+++|++|++.+++.++.+.+..|.++++|+.|++++| .++.+++.+|..+++|++|+|+
T Consensus        11 ~~l~c~~~~~~~~-p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          11 SGLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SCEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred             CeEEecCCCCccC-cccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceecc
Confidence            3444444444433 2234456677777777666788888888888999999999999 8999998999999999999999


Q ss_pred             CCcceeeccccccCCcceEEecCCCcccccCchhHHHHHHhhc----CCCceeeCCCcccccccccc
Q psy8551         512 ENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR----NTSAVFCNSPAPLKYKSLIS  574 (581)
Q Consensus       512 ~n~l~~l~~~~~~~~~L~~L~l~~np~~c~c~~~~~~~~~~~~----~~~~~~c~~~~~~~~~~~~~  574 (581)
                      +|+|+.++..+....+|+.|++++|||.|+|+++||..|....    ....+.|..|..++|.|-..
T Consensus        89 ~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~~~  155 (156)
T d2ifga3          89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS  155 (156)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCTT
T ss_pred             CCCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCccc
Confidence            9999999988877778999999999999999999999999764    34567899999999987554

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=5.3e-16  Score=150.95  Aligned_cols=95  Identities=19%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .++++|+|+++.++.+|+.   .++|++|++++|+|+.+|..    ..+|++|++++|.+                    
T Consensus        38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l--------------------   90 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNL--------------------   90 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCC--------------------
T ss_pred             cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccc----hhhhhhhhhhhccc--------------------
Confidence            4677888888888887753   46778888888887777632    34677777777643                    


Q ss_pred             ccccccchhhcCCC-CCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcce
Q psy8551         125 NRISRIDQACFEGL-TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       125 ~~l~~~~~~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~  176 (581)
                         +.+     ..+ +.|++|++++|.+..++.  ++.+++|++|++.++.+.
T Consensus        91 ---~~l-----~~lp~~L~~L~L~~n~l~~lp~--~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          91 ---KAL-----SDLPPLLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             ---SCC-----CSCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCS
T ss_pred             ---chh-----hhhccccccccccccccccccc--hhhhccceeecccccccc
Confidence               111     111 246666666666655543  344555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.77  E-value=6.5e-16  Score=150.29  Aligned_cols=179  Identities=21%  Similarity=0.218  Sum_probs=122.9

Q ss_pred             CCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEEC
Q psy8551         139 TALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVL  218 (581)
Q Consensus       139 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l  218 (581)
                      .+++.|++++++++.+|.    .+++|++|++++|.++.++.    ...+|+.|++.+|+++.+..  +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~l~~n~l~~l~~--l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPE----LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCCS--C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCccccc----chhhhhhhhhhhcccchhhh--h--ccccccccc
Confidence            468899999999998875    25789999999999987764    24689999999998876542  2  246999999


Q ss_pred             CCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCcc
Q psy8551         219 TDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLK  298 (581)
Q Consensus       219 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  298 (581)
                      ++|.++.++.  ++.+++|++++++++.+...+..    ...+..+.+.....   .....+..+..++.+.+..+ ...
T Consensus       106 ~~n~l~~lp~--~~~l~~L~~L~l~~~~~~~~~~~----~~~l~~l~~~~~~~---~~~~~l~~l~~l~~L~l~~n-~~~  175 (353)
T d1jl5a_         106 SNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDL----PPSLEFIAAGNNQL---EELPELQNLPFLTAIYADNN-SLK  175 (353)
T ss_dssp             CSSCCSSCCC--CTTCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCC---SSCCCCTTCTTCCEEECCSS-CCS
T ss_pred             cccccccccc--hhhhccceeeccccccccccccc----cccccchhhccccc---cccccccccccceecccccc-ccc
Confidence            9999998873  67789999999998877654432    34455565544321   22334556677888888877 333


Q ss_pred             ccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccCCCC
Q psy8551         299 TIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAENPI  344 (581)
Q Consensus       299 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~  344 (581)
                      .++.    .....+.+...+..+..++. ...++.++.+++++|..
T Consensus       176 ~~~~----~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~  216 (353)
T d1jl5a_         176 KLPD----LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLL  216 (353)
T ss_dssp             SCCC----CCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             cccc----cccccccccccccccccccc-ccccccccccccccccc
Confidence            3322    12234455565555554443 45667888888877654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-17  Score=153.78  Aligned_cols=197  Identities=22%  Similarity=0.279  Sum_probs=130.5

Q ss_pred             ccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCccc
Q psy8551          47 IQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNR  126 (581)
Q Consensus        47 l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~  126 (581)
                      -+.++.++..++.+|+.+.  +++++|++++|.|+.++..+|.++++|++|++++|.+                      
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~----------------------   65 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----------------------   65 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTT----------------------
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccc----------------------
Confidence            3578889999999987553  6899999999999999988899999999999999864                      


Q ss_pred             ccccchhhcCCCCCCcEEeCCC-CcCcccCCcccccCccCcEEECCCCcceeccCC-cCCCCCCCcEEEcCCCCccccCc
Q psy8551         127 ISRIDQACFEGLTALRILYLDD-NQLRSVPTPSFIYLGMLAELRVGLNVFTTLADG-AFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       127 l~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~-~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                      ...+++.+|.+++.++++.+.. +++...+...|..+++|+++++.++.+...... .+..++.+..+...++.+..+..
T Consensus        66 ~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~  145 (242)
T d1xwdc1          66 LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER  145 (242)
T ss_dssp             CCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred             cceeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc
Confidence            2234455677788888888754 567777776788888888888888877655432 23344555555555556666555


Q ss_pred             cccCCCC-CCcEEECCCCcCCccCccccCCCCCCCEE-ECCCCcccccCCcccCCCcccceeeecC
Q psy8551         205 NAFRGLS-GLRSLVLTDNRLQSIPTKQLSKLTRLEEL-EIGQNGFSMLEAGCFKGLSYLKRLEITG  268 (581)
Q Consensus       205 ~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~l~~~~~~~~~~~~~~~~~~L~~L~l~~  268 (581)
                      ..+..++ .++.|++.+|+++.++...+. .++++++ .+.+|.++.++...|.++++|+.|++++
T Consensus       146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~  210 (242)
T d1xwdc1         146 NSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR  210 (242)
T ss_dssp             TSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTT
T ss_pred             cccccccccceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCC
Confidence            5555443 566666666666666544332 2333333 3444555555444444444444444444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.2e-17  Score=145.95  Aligned_cols=185  Identities=23%  Similarity=0.343  Sum_probs=106.7

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .++++|++.++.|++++ .+.++++|++|++++|.++.+.+  +..+++|+++++++|.+                    
T Consensus        41 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~--------------------   97 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL--------------------   97 (227)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC--------------------
T ss_pred             CCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccccc--------------------
Confidence            45666666666666663 35666666666666666655542  56666666666666542                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.+.  .+.++++|+.++++++......  .+...+.++.+.++++.+....+  +.++++|+.|++.+|.++... 
T Consensus        98 ---~~i~--~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~~-  167 (227)
T d1h6ua2          98 ---KNVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT-  167 (227)
T ss_dssp             ---SCCG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-
T ss_pred             ---cccc--cccccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccccccccccccccccccch-
Confidence               2221  2455666666666666554433  24445566666666655543332  455566666666666555433 


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeec
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT  267 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  267 (581)
                       .+..+++|+.|++++|+++++++  ++.+++|++|++++|+++.+++  +..+++|+.|+++
T Consensus       168 -~l~~l~~L~~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~ls  225 (227)
T d1h6ua2         168 -PLANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT  225 (227)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEE
T ss_pred             -hhcccccceecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEee
Confidence             25566666666666666665542  5566666666666666665442  4555666665553

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.1e-16  Score=139.78  Aligned_cols=161  Identities=24%  Similarity=0.371  Sum_probs=82.7

Q ss_pred             CCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccccccchhhcCCCCCCcEEe
Q psy8551          66 IYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRISRIDQACFEGLTALRILY  145 (581)
Q Consensus        66 ~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l~~~~~~~l~~~~~L~~L~  145 (581)
                      .+.++++|+++++.++.+.  .+..+++|++|++++|.+                       +++.+  ++++++|++|+
T Consensus        38 ~l~~l~~L~l~~~~i~~l~--~l~~l~nL~~L~Ls~N~l-----------------------~~~~~--l~~l~~L~~L~   90 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQL-----------------------TDITP--LKNLTKLVDIL   90 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCC-----------------------CCCGG--GTTCTTCCEEE
T ss_pred             HhcCCCEEECCCCCCCCcc--ccccCCCcCcCccccccc-----------------------cCccc--ccCCccccccc
Confidence            3445555555555555443  244555555555555532                       22221  44555555555


Q ss_pred             CCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCc
Q psy8551         146 LDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQS  225 (581)
Q Consensus       146 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~  225 (581)
                      +++|.+..++  .+.++++|+.|+++++......  .+..+++|+.|++++|++..+.  .+..+++|+.|++.+|++++
T Consensus        91 l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~  164 (199)
T d2omxa2          91 MNNNQIADIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTD  164 (199)
T ss_dssp             CCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCC
T ss_pred             cccccccccc--cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccC
Confidence            5555554443  2445555555555555544332  2445555666666655554432  34555566666666666655


Q ss_pred             cCccccCCCCCCCEEECCCCcccccCCcccCCCcccce
Q psy8551         226 IPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKR  263 (581)
Q Consensus       226 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~  263 (581)
                      ++  .++.+++|++|++++|+++.++  .+..+++|+.
T Consensus       165 l~--~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~  198 (199)
T d2omxa2         165 LK--PLANLTTLERLDISSNKVSDIS--VLAKLTNLES  198 (199)
T ss_dssp             CG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSE
T ss_pred             Cc--cccCCCCCCEEECCCCCCCCCc--cccCCCCCCc
Confidence            54  2555666666666666555432  2444454444

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=1.7e-16  Score=141.64  Aligned_cols=122  Identities=30%  Similarity=0.449  Sum_probs=61.1

Q ss_pred             CCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcE
Q psy8551         136 EGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRS  215 (581)
Q Consensus       136 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  215 (581)
                      +.+++|+.|++++|+++.++  .+..+++|+.|++++|.+..+.  .+.++++++.++++++.++...  .+..+++|+.
T Consensus        87 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~  160 (210)
T d1h6ta2          87 ANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDT  160 (210)
T ss_dssp             TTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSE
T ss_pred             ccCccccccccccccccccc--cccccccccccccccccccccc--cccccccccccccccccccccc--cccccccccc
Confidence            34455555555555554443  2444555555555555444332  2444555555555555544322  2344555555


Q ss_pred             EECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeec
Q psy8551         216 LVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEIT  267 (581)
Q Consensus       216 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~  267 (581)
                      +++++|+++++++  +..+++|++|++++|.++.++  .+..+++|+.|+++
T Consensus       161 l~l~~n~l~~i~~--l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELF  208 (210)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEE
T ss_pred             ccccccccccccc--ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEcc
Confidence            5555555555432  555555556666555555442  24555555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=4.3e-16  Score=137.73  Aligned_cols=160  Identities=26%  Similarity=0.395  Sum_probs=129.6

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      +++++|+++++.|+.++ .+..+++|++|++++|+++.+++  +.++++|++|++++|.+                    
T Consensus        40 ~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~--------------------   96 (199)
T d2omxa2          40 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI--------------------   96 (199)
T ss_dssp             TTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred             cCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccCccc--ccCCccccccccccccc--------------------
Confidence            68899999999998875 47889999999999999888774  78889999999998763                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         ..++  .+++++.|+.|+++++.+....  .+..+++|+.|++++|.+..++  .+..+++|+.|++.+|+++++. 
T Consensus        97 ---~~~~--~l~~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~--~l~~~~~L~~L~l~~n~l~~l~-  166 (199)
T d2omxa2          97 ---ADIT--PLANLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLNFSSNQVTDLK-  166 (199)
T ss_dssp             ---CCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG-
T ss_pred             ---cccc--cccccccccccccccccccccc--ccchhhhhHHhhhhhhhhcccc--cccccccccccccccccccCCc-
Confidence               2222  2678899999999988777654  4677889999999999887654  3778899999999999888765 


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEE
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEEL  240 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  240 (581)
                       .+.++++|++|++++|++++++  .+..+++|++|
T Consensus       167 -~l~~l~~L~~L~ls~N~i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         167 -PLANLTTLERLDISSNKVSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             -GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCSEE
T ss_pred             -cccCCCCCCEEECCCCCCCCCc--cccCCCCCCcC
Confidence             3788899999999999988875  37778888775

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=7.6e-16  Score=139.43  Aligned_cols=202  Identities=26%  Similarity=0.406  Sum_probs=163.3

Q ss_pred             ccCcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCcc
Q psy8551         121 IFGQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLT  200 (581)
Q Consensus       121 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~  200 (581)
                      +++.+.+++..  .++.+.+|+.|++.+++++++.  .+.++++|++|++++|.+.++.+  +..+++|+.+++.++.++
T Consensus        25 ~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~   98 (227)
T d1h6ua2          25 AAGKSNVTDTV--TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK   98 (227)
T ss_dssp             HTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS
T ss_pred             HhCCCCcCCcC--CHHHcCCcCEEECCCCCCCcch--hHhcCCCCcEeecCCceeecccc--cccccccccccccccccc
Confidence            44444555543  2456789999999999999874  58899999999999999987764  889999999999999888


Q ss_pred             ccCccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccC
Q psy8551         201 NISDNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF  280 (581)
Q Consensus       201 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~  280 (581)
                      .+.  .+..+++|+.+.++++....+.  .+...+.++.+.++.+.+.....  +..+++|+.+.+.++. +...  ..+
T Consensus        99 ~i~--~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~L~~L~l~~n~-~~~~--~~l  169 (227)
T d1h6ua2          99 NVS--AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQ-VSDL--TPL  169 (227)
T ss_dssp             CCG--GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC-CCCC--GGG
T ss_pred             ccc--cccccccccccccccccccccc--hhccccchhhhhchhhhhchhhh--hccccccccccccccc-cccc--hhh
Confidence            654  4788999999999999887765  36677899999999887765443  5677889999998863 3322  337


Q ss_pred             CCCCCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCccccccccCCCCcceEEccC
Q psy8551         281 ADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFTSFSESMLAWPELRTIDIAE  341 (581)
Q Consensus       281 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  341 (581)
                      ..+++|++|++++| .+.+++.  ++++++|++|++++|+++++++ +..+++|++|++++
T Consensus       170 ~~l~~L~~L~Ls~n-~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         170 ANLSKLTTLKADDN-KISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             cccccceecccCCC-ccCCChh--hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            78899999999999 6777764  7899999999999999998874 77899999999874

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=6.2e-16  Score=137.88  Aligned_cols=164  Identities=24%  Similarity=0.372  Sum_probs=132.8

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      .++++|+++++.++.++. +.++++|++|++++|+++.++.  +..+++|++|++++|.+                    
T Consensus        46 ~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i--------------------  102 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV--------------------  102 (210)
T ss_dssp             HTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC--------------------
T ss_pred             cCccEEECcCCCCCCchh-HhhCCCCCEEeCCCccccCccc--cccCccccccccccccc--------------------
Confidence            578889999998888764 7788899999999998888773  67788899999988753                    


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCc
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISD  204 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~  204 (581)
                         +.++  .+.++++|+.|+++++.+..++  .+..+++++.+++++|.+++..  .+..+++|+.+++++|+++++.+
T Consensus       103 ---~~l~--~l~~l~~L~~L~l~~~~~~~~~--~l~~l~~l~~l~~~~n~l~~~~--~~~~l~~L~~l~l~~n~l~~i~~  173 (210)
T d1h6ta2         103 ---KDLS--SLKDLKKLKSLSLEHNGISDIN--GLVHLPQLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP  173 (210)
T ss_dssp             ---CCGG--GGTTCTTCCEEECTTSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCCCGG
T ss_pred             ---cccc--cccccccccccccccccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc
Confidence               3332  3778899999999998887654  5778889999999999887654  36678899999999998887653


Q ss_pred             cccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCC
Q psy8551         205 NAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ  244 (581)
Q Consensus       205 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  244 (581)
                        +..+++|+.|++++|++++++  .+..+++|++|++++
T Consensus       174 --l~~l~~L~~L~Ls~N~i~~l~--~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         174 --LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFS  209 (210)
T ss_dssp             --GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEE
T ss_pred             --ccCCCCCCEEECCCCCCCCCh--hhcCCCCCCEEEccC
Confidence              788899999999999998875  488899999998853

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.4e-19  Score=177.73  Aligned_cols=113  Identities=18%  Similarity=0.178  Sum_probs=62.6

Q ss_pred             cCccEEEcccCCcccc--cccccCCCcccEEEcCCCceeecC----CCCCCCCCcccEEeCCCCCCCCcccccccCCccc
Q psy8551          45 PSIQRLVLSTNRIKTV--DSAIPIYLSLQHVDLSHTTWLIIP----IGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRR  118 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l--~~~~~~~~~L~~L~ls~~~l~~~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~  118 (581)
                      ++|++||++++++++.  ...+..++++++|+|++|.++...    ..++..+++|++|++++|.+.+..+         
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~---------   72 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGV---------   72 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHH---------
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHH---------
Confidence            3678888888888753  344566778888888888766321    1234566777777777765311100         


Q ss_pred             ccccCcccccccchhhcC-CCCCCcEEeCCCCcCcccCC----cccccCccCcEEECCCCcce
Q psy8551         119 VEIFGQNRISRIDQACFE-GLTALRILYLDDNQLRSVPT----PSFIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       119 L~~l~~~~l~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~n~~~  176 (581)
                               ..+ ...+. ...+|++|++++|.+++...    ..+..+++|++|++++|.+.
T Consensus        73 ---------~~l-~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          73 ---------HCV-LQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             ---------HHH-HHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ---------HHH-HHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence                     000 11111 22456677777666654321    12344555666666665544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=5.5e-17  Score=164.13  Aligned_cols=136  Identities=18%  Similarity=0.161  Sum_probs=85.0

Q ss_pred             CCCCCEEEcCCCcCCccChhhh-----cCCCCCcEeecCCCcceeeccc----cccCCccccEEeecCCCCeeEecC---
Q psy8551         404 LSGLRSLVLTDNRLQSIPTKQL-----SKLTRLEELEIGQNGFSMLEAG----CFKGLSYLKRLEITGASNLTRVRK---  471 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~---  471 (581)
                      .+.++.+++++|.++......+     ...+.|+.++++++.++.....    .+...++|++|++++| .+++.+.   
T Consensus       282 ~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N-~i~~~g~~~l  360 (460)
T d1z7xw1         282 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVREL  360 (460)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHH
T ss_pred             cccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeee-cccCcccchh
Confidence            5677788888877754322211     2345788888888777654322    2345567888888775 3433211   


Q ss_pred             -Ccc-CCCCCCCeeeCCCCCCceeec----CCccCCCCCccEEEcCCCccee-----ecccccc-CCcceEEecCCCccc
Q psy8551         472 -GAF-ADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNLKENAFTS-----FSESMLA-WPELRTIDIAENPIE  539 (581)
Q Consensus       472 -~~~-~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~~n~l~~-----l~~~~~~-~~~L~~L~l~~np~~  539 (581)
                       ..+ ...+.|++|++++| .++...    ...+..+++|++|+|++|+++.     +.+.+.. ...|+.|++.+|.+.
T Consensus       361 ~~~l~~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~  439 (460)
T d1z7xw1         361 CQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS  439 (460)
T ss_dssp             HHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred             hhhhhcccCCCCEEECCCC-CCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence             112 34567889999988 555421    1235567889999999998873     3333433 336899999999886


Q ss_pred             cc
Q psy8551         540 CG  541 (581)
Q Consensus       540 c~  541 (581)
                      .+
T Consensus       440 ~~  441 (460)
T d1z7xw1         440 EE  441 (460)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=122.56  Aligned_cols=108  Identities=23%  Similarity=0.250  Sum_probs=58.5

Q ss_pred             cCccEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCc
Q psy8551          45 PSIQRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQ  124 (581)
Q Consensus        45 ~~l~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~  124 (581)
                      ..+++|+|++|+|+.++..+..+++|++|++++|.|+.++  .+..+++|++|++++|.                     
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~---------------------   74 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNR---------------------   74 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSC---------------------
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC--CcccCcchhhhhccccc---------------------
Confidence            3566666666666666555555666666666666666553  35555666666666654                     


Q ss_pred             ccccccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCccee
Q psy8551         125 NRISRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTT  177 (581)
Q Consensus       125 ~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~  177 (581)
                        ++.+++..+..+++|+.|++++|.+..++. ..+..+++|++|++++|.++.
T Consensus        75 --i~~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          75 --ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             --CCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             --ccCCCccccccccccccceeccccccccccccccccccccchhhcCCCcccc
Confidence              223333333445555555555555554432 234445555555555554443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=135.87  Aligned_cols=183  Identities=13%  Similarity=0.106  Sum_probs=97.8

Q ss_pred             CCCCEEeCCCCCCccccccccccCCCCCcEEecCCCCCc-cccccccCCCCcceEEccCCCCccCCchhhHHHHHhhcCC
Q psy8551         284 LNLETLTLNKNPKLKTIEEGALVGLPNLYHLNLKENAFT-SFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRRNT  362 (581)
Q Consensus       284 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~~~  362 (581)
                      .+|++|+++++..........+.++++|++|+++++.++ ..+..+..+++|++|+++++.--.+..   +         
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~---l---------  113 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA---L---------  113 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH---H---------
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccc---c---------
Confidence            456666666652222222224566677777777777655 233445566677777776642110000   0         


Q ss_pred             CceeecCCCcccccccccCCccccccCCCCccccCccccCCCCCCCEEEcCCC-cCCccCh-hhh-cCCCCCcEeecCCC
Q psy8551         363 SAVFCNSPAPLKYKSLISLSAEDLGCAGAGLTNISDNAFRGLSGLRSLVLTDN-RLQSIPT-KQL-SKLTRLEELEIGQN  439 (581)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~L~~L~l~~n-~l~~~~~-~~l-~~l~~L~~L~l~~~  439 (581)
                                                         ...+.++++|++|++++| .+++... ..+ ..++.|+.|+++++
T Consensus       114 -----------------------------------~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~  158 (284)
T d2astb2         114 -----------------------------------QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  158 (284)
T ss_dssp             -----------------------------------HHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             -----------------------------------chhhHHHHhccccccccccccccccchhhhcccccccchhhhccc
Confidence                                               001223566777777665 3332111 112 23456777777654


Q ss_pred             --cceeecc-ccccCCccccEEeecCCCCeeEecCCccCCCCCCCeeeCCCCCCceeecCCccCCCCCccEEEcCCC
Q psy8551         440 --GFSMLEA-GCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKIIEEDALVGLPNLYHLNLKEN  513 (581)
Q Consensus       440 --~i~~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~l~~L~~L~l~~n  513 (581)
                        .++.... .....+++|++|++++|..+++.....+..+++|++|++++|..+++.....++++++|++|++++|
T Consensus       159 ~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         159 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence              2332211 1224566677777776666665555556666677777777765555444444566677777777666

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.2e-14  Score=119.45  Aligned_cols=128  Identities=20%  Similarity=0.213  Sum_probs=108.0

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCc
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLR  214 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~  214 (581)
                      +.++.+++.|++++|+|+.++. .+..+++|++|++++|.++.+.  .+..+++|+.|++++|+++.+++..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC--CcccCcchhhhhcccccccCCCccccccccccc
Confidence            6678899999999999999974 5677899999999999999884  488999999999999999998877777899999


Q ss_pred             EEECCCCcCCccCc-cccCCCCCCCEEECCCCcccccCC---cccCCCcccceee
Q psy8551         215 SLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLEA---GCFKGLSYLKRLE  265 (581)
Q Consensus       215 ~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~  265 (581)
                      +|++++|+++.++. ..+..+++|+++++++|+++..+.   ..+..+++|+.|+
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            99999999987753 468889999999999998876653   2345566666665

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.44  E-value=1.1e-13  Score=110.86  Aligned_cols=104  Identities=22%  Similarity=0.263  Sum_probs=81.5

Q ss_pred             cEEEcccCCcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCcccccccCcccc
Q psy8551          48 QRLVLSTNRIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIFGQNRI  127 (581)
Q Consensus        48 ~~L~L~~~~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l~~~~l  127 (581)
                      |+|+|++|+++.++. +..+++|++|++++|+++.+|. .+..+++|++|++++|.+                       
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i-----------------------   55 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNAL-----------------------   55 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCC-----------------------
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccc-----------------------
Confidence            578999999988874 7888999999999999988874 578888899999988863                       


Q ss_pred             cccchhhcCCCCCCcEEeCCCCcCcccCC-cccccCccCcEEECCCCcceec
Q psy8551         128 SRIDQACFEGLTALRILYLDDNQLRSVPT-PSFIYLGMLAELRVGLNVFTTL  178 (581)
Q Consensus       128 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~~~~~  178 (581)
                      +.++  .++.+++|++|++++|+++.++. ..+..+++|++|++++|.++..
T Consensus        56 ~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          56 ENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             CCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             cccC--ccccccccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            3332  26778888888888888887764 3567778888888888877644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=4.4e-14  Score=132.01  Aligned_cols=58  Identities=22%  Similarity=0.248  Sum_probs=25.7

Q ss_pred             CCCcEEEcCCCCccccC-ccccCCCCCCcEEECCCCcCCccCccccCCCCCCCEEECCC
Q psy8551         187 GRLSALDLRGAGLTNIS-DNAFRGLSGLRSLVLTDNRLQSIPTKQLSKLTRLEELEIGQ  244 (581)
Q Consensus       187 ~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  244 (581)
                      .+|++|+++++.++... ...+..+++|++|++.++.++......+..+++|++|++++
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~  104 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSG  104 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccc
Confidence            45555555555443221 12234445555555555544432223344444444444444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=8.5e-13  Score=105.65  Aligned_cols=105  Identities=27%  Similarity=0.352  Sum_probs=82.5

Q ss_pred             cEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCC
Q psy8551         142 RILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDN  221 (581)
Q Consensus       142 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n  221 (581)
                      |.|++++|+++.++  .+..+++|++|++++|.++.+++ .+..+++|+.|++++|.++.++  .+..+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~--~l~~l~~L~~L~ls~N~l~~lp~-~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC--HLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC--CGGGGTTCCEEECCSSCCCCCCG-GGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc--ccccCCCCCEEECCCCccCcchh-hhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            56888888888775  37778888888888888887754 4778888888888888888764  4778888888888888


Q ss_pred             cCCccCc-cccCCCCCCCEEECCCCcccccC
Q psy8551         222 RLQSIPT-KQLSKLTRLEELEIGQNGFSMLE  251 (581)
Q Consensus       222 ~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~  251 (581)
                      +++.++. ..+..+++|+++++++|+++...
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCc
Confidence            8887653 45777888888888888876543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.6e-11  Score=101.27  Aligned_cols=123  Identities=24%  Similarity=0.305  Sum_probs=99.1

Q ss_pred             CCCEEECCCCcccccCCcccCCCcccceeeecCCCCceeecCccCCCCCCCCEEeCCCCCCccccccccccCCCCCcEEe
Q psy8551         236 RLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGALVGLPNLYHLN  315 (581)
Q Consensus       236 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~  315 (581)
                      ....++.+++.+...+.. +..+++++.|.+.+++.++.+....|.++++|+.|++++| .+..++..+|..+++|+.|+
T Consensus         9 ~~~~l~c~~~~~~~~p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCccCccc-ccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCccccccccccccccee
Confidence            344566666555544333 5566777777777666777888778888889999999999 78899888899999999999


Q ss_pred             cCCCCCccccccccCCCCcceEEccCCCCccCCchhhHHHHHhhc
Q psy8551         316 LKENAFTSFSESMLAWPELRTIDIAENPIECGCNILWLREMLVRR  360 (581)
Q Consensus       316 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~~  360 (581)
                      +++|.++.++........|+.|++++|++.|.|...|+..+....
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~  131 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG  131 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTT
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCCchHHHHHHHHHhc
Confidence            999999999987777778999999999999999999998876543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=2.5e-12  Score=123.86  Aligned_cols=149  Identities=22%  Similarity=0.206  Sum_probs=97.8

Q ss_pred             CCCCCEEEcCCCcCCccCh----hhhcCCCCCcEeecCCCcceee-----ccccccCCccccEEeecCCCCeeEe----c
Q psy8551         404 LSGLRSLVLTDNRLQSIPT----KQLSKLTRLEELEIGQNGFSML-----EAGCFKGLSYLKRLEITGASNLTRV----R  470 (581)
Q Consensus       404 ~~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~~~i~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~----~  470 (581)
                      .+.|+.+.+++|.++....    ..+..++.|++|++++|.+...     ....+..+++|++|++++|. ++..    .
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L  235 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSAL  235 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccc-ccccccccc
Confidence            4667777777777653322    3345677788888888777642     23345667778888887753 3322    1


Q ss_pred             CCccCCCCCCCeeeCCCCCCceeecCC----ccC--CCCCccEEEcCCCccee-----eccccc-cCCcceEEecCCCcc
Q psy8551         471 KGAFADNLNLETLTLNKNPKLKIIEED----ALV--GLPNLYHLNLKENAFTS-----FSESML-AWPELRTIDIAENPI  538 (581)
Q Consensus       471 ~~~~~~~~~L~~L~l~~~~~l~~~~~~----~~~--~l~~L~~L~l~~n~l~~-----l~~~~~-~~~~L~~L~l~~np~  538 (581)
                      ...+..+++|++|++++| .++.....    .+.  ..+.|++|++++|.++.     +...+. .+++|+.|+++||++
T Consensus       236 ~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         236 AIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            234567888999999999 55543221    122  34689999999999873     445554 578999999999999


Q ss_pred             cccCc-hhHHHHHHhhc
Q psy8551         539 ECGCN-ILWLREMLVRR  554 (581)
Q Consensus       539 ~c~c~-~~~~~~~~~~~  554 (581)
                      ..+.. ..++.+.....
T Consensus       315 ~~~~~~~~~l~~~~~~~  331 (344)
T d2ca6a1         315 SEEDDVVDEIREVFSTR  331 (344)
T ss_dssp             CTTSHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHc
Confidence            76554 44565555443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.22  E-value=1.3e-12  Score=125.97  Aligned_cols=251  Identities=17%  Similarity=0.112  Sum_probs=148.4

Q ss_pred             cccccccCCCcccEEEcCCCceeecC----CCCCCCCCcccEEeCCCCCCC--CcccccccCCcccccccCcccccccch
Q psy8551          59 TVDSAIPIYLSLQHVDLSHTTWLIIP----IGGFEPQEKLVELQLNHNKHF--PQQIVCSIISPRRVEIFGQNRISRIDQ  132 (581)
Q Consensus        59 ~l~~~~~~~~~L~~L~ls~~~l~~~~----~~~~~~l~~L~~L~l~~n~~~--~~~~~~~~~~~~~L~~l~~~~l~~~~~  132 (581)
                      .+...+.....|+.|+|++|.+....    ...+...++|+.++++++...  ......              .+. ...
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~--------------~~~-~l~   86 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPE--------------ALR-LLL   86 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHH--------------HHH-HHH
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccch--------------HHH-HHH
Confidence            34445667788888888888775311    234667788888888876531  100000              011 113


Q ss_pred             hhcCCCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCCcceeccCC-------------cCCCCCCCcEEEcC
Q psy8551         133 ACFEGLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFTTLADG-------------AFNGLGRLSALDLR  195 (581)
Q Consensus       133 ~~l~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~L~  195 (581)
                      ..+..+++|+.|++++|.+......    .+..+++|++|++++|.+......             .....+.|+.+.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            3466778899999998887764332    234567888888888876421100             01245677788887


Q ss_pred             CCCccccCcc----ccCCCCCCcEEECCCCcCCcc-----CccccCCCCCCCEEECCCCcccccCCcccCCCcccceeee
Q psy8551         196 GAGLTNISDN----AFRGLSGLRSLVLTDNRLQSI-----PTKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEI  266 (581)
Q Consensus       196 ~~~l~~~~~~----~l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l  266 (581)
                      ++.++.....    .+..+++|+.|++++|+++..     ....+..+++|++|++++|.++......+           
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L-----------  235 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSAL-----------  235 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHH-----------
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccc-----------
Confidence            7766543322    234567788888887777631     12345566777777777776543211111           


Q ss_pred             cCCCCceeecCccCCCCCCCCEEeCCCCCCcccccccc----cc--CCCCCcEEecCCCCCcc-----cccccc-CCCCc
Q psy8551         267 TGASNLTRVRKGAFADNLNLETLTLNKNPKLKTIEEGA----LV--GLPNLYHLNLKENAFTS-----FSESML-AWPEL  334 (581)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~--~~~~L~~L~l~~~~l~~-----~~~~~~-~~~~L  334 (581)
                                ...+..+++|++|++++| .+++.....    +.  ..+.|++|++++|.++.     +...+. +.+.|
T Consensus       236 ----------~~~l~~~~~L~~L~Ls~n-~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L  304 (344)
T d2ca6a1         236 ----------AIALKSWPNLRELGLNDC-LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDL  304 (344)
T ss_dssp             ----------HHHGGGCTTCCEEECTTC-CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTC
T ss_pred             ----------cccccccccchhhhhhcC-ccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCC
Confidence                      012233456666777766 344332211    22  23578899999988762     333332 46789


Q ss_pred             ceEEccCCCCcc
Q psy8551         335 RTIDIAENPIEC  346 (581)
Q Consensus       335 ~~L~l~~~~~~~  346 (581)
                      +.|++++|.+..
T Consensus       305 ~~L~l~~N~~~~  316 (344)
T d2ca6a1         305 LFLELNGNRFSE  316 (344)
T ss_dssp             CEEECTTSBSCT
T ss_pred             CEEECCCCcCCC
Confidence            999999998864

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.1e-13  Score=121.26  Aligned_cols=129  Identities=23%  Similarity=0.259  Sum_probs=89.3

Q ss_pred             cCccEEEcccC--CcccccccccCCCcccEEEcCCCceeecCCCCCCCCCcccEEeCCCCCCCCcccccccCCccccccc
Q psy8551          45 PSIQRLVLSTN--RIKTVDSAIPIYLSLQHVDLSHTTWLIIPIGGFEPQEKLVELQLNHNKHFPQQIVCSIISPRRVEIF  122 (581)
Q Consensus        45 ~~l~~L~L~~~--~i~~l~~~~~~~~~L~~L~ls~~~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~L~~l  122 (581)
                      ...+.+++.+.  .++.++..+..+++|++|+|++|+|+.++  .+..+++|++|++++|.+                  
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i------------------   82 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLI------------------   82 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEE------------------
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCcc--cccCCccccChhhccccc------------------
Confidence            35566777654  56677778888999999999999888875  478888889998888753                  


Q ss_pred             CcccccccchhhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccC-CcCCCCCCCcEEEcCCCCccc
Q psy8551         123 GQNRISRIDQACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLAD-GAFNGLGRLSALDLRGAGLTN  201 (581)
Q Consensus       123 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~~~l~~  201 (581)
                           +.++. .+..+++|+.|++++|.++.++  .+..+++|++|++++|.++.+.. ..+..+++|+.|++++|++..
T Consensus        83 -----~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~  154 (198)
T d1m9la_          83 -----KKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             -----CSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHH
T ss_pred             -----ccccc-cccccccccccccccccccccc--cccccccccccccccchhccccccccccCCCccceeecCCCcccc
Confidence                 22211 1223456888888888777663  46667778888888777765542 245666677777777665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.99  E-value=1.3e-12  Score=114.28  Aligned_cols=114  Identities=22%  Similarity=0.278  Sum_probs=91.5

Q ss_pred             hhcCCCCCCcEEeCCCCcCcccCCcccccCccCcEEECCCCcceeccCCcCCCCCCCcEEEcCCCCccccCccccCCCCC
Q psy8551         133 ACFEGLTALRILYLDDNQLRSVPTPSFIYLGMLAELRVGLNVFTTLADGAFNGLGRLSALDLRGAGLTNISDNAFRGLSG  212 (581)
Q Consensus       133 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~  212 (581)
                      ..+..+++|++|++++|+|+.++  .+..+++|++|++++|.++.++. ....+++|+.|++++|.++.+.  .+..+++
T Consensus        42 ~sl~~L~~L~~L~Ls~n~I~~i~--~l~~l~~L~~L~Ls~N~i~~i~~-~~~~~~~L~~L~l~~N~i~~l~--~~~~l~~  116 (198)
T d1m9la_          42 ATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIEN-LDAVADTLEELWISYNQIASLS--GIEKLVN  116 (198)
T ss_dssp             HHHHHTTTCCEEECSEEEESCCC--CHHHHTTCCEEECCEEEECSCSS-HHHHHHHCCEEECSEEECCCHH--HHHHHHH
T ss_pred             hHHhcccccceeECcccCCCCcc--cccCCccccChhhcccccccccc-cccccccccccccccccccccc--ccccccc
Confidence            34777899999999999998875  47889999999999998877653 2334567999999999888763  3667888


Q ss_pred             CcEEECCCCcCCccCc-cccCCCCCCCEEECCCCcccccC
Q psy8551         213 LRSLVLTDNRLQSIPT-KQLSKLTRLEELEIGQNGFSMLE  251 (581)
Q Consensus       213 L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~~~~~~~~  251 (581)
                      |+.|++++|+++.++. ..+..+++|++|++++|++....
T Consensus       117 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~  156 (198)
T d1m9la_         117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY  156 (198)
T ss_dssp             SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHH
T ss_pred             ccccccccchhccccccccccCCCccceeecCCCccccCc
Confidence            9999999999987653 46788999999999999876543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.4e-07  Score=78.70  Aligned_cols=40  Identities=20%  Similarity=0.150  Sum_probs=16.9

Q ss_pred             CCCCCcEEeCCCCcCcccCC--cccccCccCcEEECCCCcce
Q psy8551         137 GLTALRILYLDDNQLRSVPT--PSFIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       137 ~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~~~  176 (581)
                      .++.|++|++++|+++.+..  ..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            34445555555554444321  12233444444444444443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=6.8e-08  Score=80.62  Aligned_cols=82  Identities=21%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             ccCccCcEEECCCCcceeccC--CcCCCCCCCcEEEcCCCCccccCccccCCCCCCcEEECCCCcCCccCc-------cc
Q psy8551         160 IYLGMLAELRVGLNVFTTLAD--GAFNGLGRLSALDLRGAGLTNISDNAFRGLSGLRSLVLTDNRLQSIPT-------KQ  230 (581)
Q Consensus       160 ~~~~~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-------~~  230 (581)
                      ..+++|++|++++|.++.+.+  ..+..+++|+.|++++|.++.+....+.....|+.|++.+|.+.....       ..
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            456667777777777665432  234456677777777777666554333334456677777776654322       22


Q ss_pred             cCCCCCCCEEE
Q psy8551         231 LSKLTRLEELE  241 (581)
Q Consensus       231 ~~~l~~L~~L~  241 (581)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            45566777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.62  E-value=2.8e-05  Score=64.54  Aligned_cols=42  Identities=14%  Similarity=0.041  Sum_probs=21.7

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCCcce
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVFT  176 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~~  176 (581)
                      +...+.|++|++++|.+......    .+...+.|++|++++|.++
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            45556666666666665532111    2233455555555555544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.40  E-value=2.9e-05  Score=64.49  Aligned_cols=60  Identities=13%  Similarity=0.081  Sum_probs=34.1

Q ss_pred             cCccEEEcccC-Cccc-----ccccccCCCcccEEEcCCCceeecCC----CCCCCCCcccEEeCCCCCC
Q psy8551          45 PSIQRLVLSTN-RIKT-----VDSAIPIYLSLQHVDLSHTTWLIIPI----GGFEPQEKLVELQLNHNKH  104 (581)
Q Consensus        45 ~~l~~L~L~~~-~i~~-----l~~~~~~~~~L~~L~ls~~~l~~~~~----~~~~~l~~L~~L~l~~n~~  104 (581)
                      +++++|+|+++ .++.     +-..+...++|++|++++|.++.-..    .++...+.|++|++++|.+
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i   84 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL   84 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhc
Confidence            56777777763 3542     22245566677777777776653221    1233445667777776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.69  E-value=0.00012  Score=60.64  Aligned_cols=119  Identities=13%  Similarity=0.051  Sum_probs=69.0

Q ss_pred             ccCCCCCCCEEEcCC-CcCCccC----hhhhcCCCCCcEeecCCCcceeeccccccCCccccEEeecCCCCeeEecCCcc
Q psy8551         400 AFRGLSGLRSLVLTD-NRLQSIP----TKQLSKLTRLEELEIGQNGFSMLEAGCFKGLSYLKRLEITGASNLTRVRKGAF  474 (581)
Q Consensus       400 ~~~~~~~L~~L~l~~-n~l~~~~----~~~l~~l~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  474 (581)
                      ...+.+.|++|++++ +.++...    ...+...+.|++|++++|.++......+.                     ..+
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~---------------------~~l   70 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA---------------------EML   70 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH---------------------HHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHH---------------------HHH
Confidence            334567888888886 3454322    23456778888888888877653322111                     112


Q ss_pred             CCCCCCCeeeCCCCCCceeec----CCccCCCCCccEEEcC--CCcce-----eeccccccCCcceEEecCCCcccc
Q psy8551         475 ADNLNLETLTLNKNPKLKIIE----EDALVGLPNLYHLNLK--ENAFT-----SFSESMLAWPELRTIDIAENPIEC  540 (581)
Q Consensus       475 ~~~~~L~~L~l~~~~~l~~~~----~~~~~~l~~L~~L~l~--~n~l~-----~l~~~~~~~~~L~~L~l~~np~~c  540 (581)
                      ...+.++.+++++| .++.-.    ...+...++|+.++|+  +|.++     .+.+.+...++|++|+++.+...+
T Consensus        71 ~~~~~l~~l~l~~~-~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~~  146 (166)
T d1io0a_          71 KVNNTLKSLNVESN-FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP  146 (166)
T ss_dssp             HHCSSCCEEECCSS-CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred             hhcccchhhhhccc-cccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCcH
Confidence            22345555555555 222111    1345667788876664  44565     355566678889999888776643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.65  E-value=0.00026  Score=58.41  Aligned_cols=41  Identities=12%  Similarity=0.031  Sum_probs=20.0

Q ss_pred             cCCCCCCcEEeCCCCcCcccCCc----ccccCccCcEEECCCCcc
Q psy8551         135 FEGLTALRILYLDDNQLRSVPTP----SFIYLGMLAELRVGLNVF  175 (581)
Q Consensus       135 l~~~~~L~~L~l~~~~i~~~~~~----~~~~~~~L~~L~L~~n~~  175 (581)
                      +...++|++|++++|.+......    .+...++++.++++++.+
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            44556666666666655432211    223344555555555444