Psyllid ID: psy8620

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-----

MFQNDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQPRESNPRPSAHKADAPPSKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQVM

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHccccccccEEEEEcccccHHHHHHcccccccEEEEEcccccccccccHHHHHHHHHHHHHccccccEEEEEcccccHHHHccccEEEEHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHcccccEEEEEEccccccccccHHHHHHHHHHHHcccccccEEEEEccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccEEEEcccccccEEEEEEcccccccccccccccHHHHHHHccccccEEEEEEcccHHHHHHHccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccccHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccEEEccccccccccccHHHHHHHHHHccccEEEEEEEccccccccccccc

ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccEEEEEEEEEEHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHcccHcEEEEEEEcccccHHHHHHHccccccEEEEEcccccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccEEEcccccEEHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccHHHHHHHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHccccccccccHHHHHHHHcccEEEEcccccEEcccccccccccccEEEccccEccccccEEccccccccccccccccccccccHcccccccccccccccccHHHHccccccccEEEEcHHHHccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHcccEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHccccHHHHEccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccc

MFQNDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFstvgygdfvpdiwpsQLYMVIMICVALIVLPTQFEQLAFTWMERQklggsysshraqseKHVVVCSTTLHADTIMDFLNEfyahpllqnYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARnysdktaadEHTILRSWavkdfapdvpqyvqifrpenklhvKFAEFIVCEDELKYALLannctcpgaSTLVTLLLHtsrgqegqisQEEWHRLygrcsgneIYHILLadsrffgeegqiSQEEWHRLygrcsgneIYHILLAdsrffgeyegksftyasfhshrkygmkitkddmwIRTYGRLYQKLCsttceipigiyrtqdmssiespqpresnprpsahkadappskltrlaFYSVEFYLFSLDDLLRAGILLAENVVVVNKElsnsaeedtlaDCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKElsnsaeedtladCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEkergshisymfrlpfaagsvfSASMLDTLLYQAFVKDYVITFIRLLLgvdqapgsgfltsmkitkddmwIRTYGRLYQKLCsttceipigiyrtqdmssiespqvm

MFQNDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGsysshraqseKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFtyasfhshrkyGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTqdmssiespqpresnprpsahkadappsKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSnsaeedtlaDCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGvdqapgsgfltsmkitkddmWIRTYGRLYQKLCSTTCEIPIGIyrtqdmssiespqvm

*******************QLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGS********EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRT*****************************LTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQ**NMRFMQFRAQDKYAL**************HISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRT************

MFQNDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWME**************SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTS***********WHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQK*************************************ADAPPSKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVV***************CNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYAL****************SYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMS******V*

****************LSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKL*************HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDM***********************PSKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKM********SHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDM*********

MFQNDLHRAMQKSQSALSQQLMILSATFVCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESP******************SKLTRLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQKLTSLAFYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQD**********

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		695	2.2.26 [Sep-21-2011]
Q8QFV0		1201	Potassium channel subfami	yes	N/A	0.507	0.293	0.55	1e-134
Q5JUK3		1230	Potassium channel subfami	yes	N/A	0.479	0.270	0.586	1e-133
Q6UVM3		1135	Potassium channel subfami	no	N/A	0.479	0.293	0.576	1e-133
Q6UVM4		1142	Potassium channel subfami	yes	N/A	0.489	0.297	0.578	1e-132
Q9Z258		1237	Potassium channel subfami	no	N/A	0.507	0.285	0.533	1e-132
Q6ZPR4		1224	Potassium channel subfami	no	N/A	0.507	0.288	0.533	1e-131
Q28265		1159	Calcium-activated potassi	no	N/A	0.395	0.237	0.285	2e-24
Q8AYS8		1137	Calcium-activated potassi	no	N/A	0.395	0.241	0.285	2e-24
Q28204		1166	Calcium-activated potassi	no	N/A	0.395	0.235	0.282	5e-23
Q9BG98		1179	Calcium-activated potassi	no	N/A	0.395	0.233	0.282	5e-23

>sp\|Q8QFV0\|KCNT1_CHICK Potassium channel subfamily T member 1 OS=Gallus gallus GN=KCNT1 PE=2 SV=1	Back alignment and function desciption

 Score =  480 bits (1236), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 231/420 (55%), Positives = 292/420 (69%), Gaps = 67/420 (15%)

Query: 4   NDLHRAMQKSQSALSQQLMILSA-------TFVCGIQHFQRAGHRHLNLFQATYYVVVTF 56
           NDLHRA+Q++QSA+  Q++IL         T  CGIQH +RAG + L+LF++ Y+ +VTF
Sbjct: 233 NDLHRAIQRTQSAMFNQVLILICTLLCLVFTGTCGIQHLERAGEK-LSLFKSFYFCIVTF 291

Query: 57  STVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEK 116
           STVGYGD  P IWPSQL +VIMICVAL+VLP QFE+L + WMERQK GG+YS HRAQ+EK
Sbjct: 292 STVGYGDVTPKIWPSQLLVVIMICVALVVLPLQFEELVYLWMERQKSGGNYSRHRAQTEK 351

Query: 117 HVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVIYI 176
           HVV+C ++L  D +MDFLNEFYAHP LQ+YYVV+L P E+D  +R +LQ+P+W+QRVIY+
Sbjct: 352 HVVLCVSSLKIDLLMDFLNEFYAHPRLQDYYVVILCPTEMDIQVRRVLQIPLWSQRVIYL 411

Query: 177 QGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIF 236
           QGS LKD DL RA+M+  EACF+L++RN  D+TAAD  TILR+WAVKDFAP+ P YVQI 
Sbjct: 412 QGSALKDQDLMRAKMDNGEACFILSSRNEVDRTAADHQTILRAWAVKDFAPNCPLYVQIL 471

Query: 237 RPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRL 296
           +PENK HVKFA+ +VCE+E KYA+LA NC CP  STL+TLL+HTSRGQEGQ S E+W R+
Sbjct: 472 KPENKFHVKFADHVVCEEECKYAMLALNCVCPATSTLITLLVHTSRGQEGQESPEQWQRM 531

Query: 297 YGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGK 356
           YGRCSGNE+YHI + DS+F                                  F EYEGK
Sbjct: 532 YGRCSGNEVYHIRMGDSKF----------------------------------FMEYEGK 557

Query: 357 SFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMSSIESPQPR 416
           SFTYA+FH+H+KYG+ +                         IGI R ++ S + +P PR
Sbjct: 558 SFTYAAFHAHKKYGVCL-------------------------IGIRREENKSILLNPGPR 592

Generates outwardly rectifying currents that are suppressed by elevation of intracellular calcium.
Gallus gallus (taxid: 9031)

>sp\|Q5JUK3\|KCNT1_HUMAN Potassium channel subfamily T member 1 OS=Homo sapiens GN=KCNT1 PE=2 SV=2	Back alignment and function description

>sp\|Q6UVM3\|KCNT2_HUMAN Potassium channel subfamily T member 2 OS=Homo sapiens GN=KCNT2 PE=1 SV=1	Back alignment and function description

>sp\|Q6UVM4\|KCNT2_RAT Potassium channel subfamily T member 2 OS=Rattus norvegicus GN=Kcnt2 PE=1 SV=1	Back alignment and function description

>sp\|Q9Z258\|KCNT1_RAT Potassium channel subfamily T member 1 OS=Rattus norvegicus GN=Kcnt1 PE=1 SV=1	Back alignment and function description

>sp\|Q6ZPR4\|KCNT1_MOUSE Potassium channel subfamily T member 1 OS=Mus musculus GN=Kcnt1 PE=2 SV=2	Back alignment and function description

>sp\|Q28265\|KCMA1_CANFA Calcium-activated potassium channel subunit alpha-1 (Fragment) OS=Canis familiaris GN=KCNMA1 PE=2 SV=2	Back alignment and function description

>sp\|Q8AYS8\|KCMA1_CHICK Calcium-activated potassium channel subunit alpha-1 OS=Gallus gallus GN=KCNMA1 PE=1 SV=2	Back alignment and function description

>sp\|Q28204\|KCMA1_BOVIN Calcium-activated potassium channel subunit alpha-1 OS=Bos taurus GN=KCNMA1 PE=1 SV=2	Back alignment and function description

>sp\|Q9BG98\|KCMA1_RABIT Calcium-activated potassium channel subunit alpha-1 OS=Oryctolagus cuniculus GN=KCNMA1 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		695
270001425		1423	hypothetical protein TcasGA2_TC000254 [T	0.486	0.237	0.847	0.0
91077962		1384	PREDICTED: similar to AGAP007585-PA [Tri	0.486	0.244	0.847	0.0
242023096		1237	conserved hypothetical protein [Pediculu	0.483	0.271	0.848	0.0
307191754		1546	Potassium channel subfamily T member 1 [	0.486	0.218	0.844	0.0
345497360		1598	PREDICTED: potassium channel subfamily T	0.483	0.210	0.843	0.0
380016836		1567	PREDICTED: potassium channel subfamily T	0.486	0.215	0.842	0.0
383853820		1539	PREDICTED: potassium channel subfamily T	0.486	0.219	0.839	0.0
442623193		1732	CG42732, isoform N [Drosophila melanogas	0.486	0.195	0.836	0.0
340729267		1570	PREDICTED: potassium channel subfamily T	0.486	0.215	0.842	0.0
198457879		1708	GA11894 [Drosophila pseudoobscura pseudo	0.486	0.197	0.836	0.0

>gi\|270001425\|gb\|EEZ97872.1\| hypothetical protein TcasGA2_TC000254 [Tribolium castaneum]	Back alignment and taxonomy information

 Score =  667 bits (1721), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/380 (84%), Positives = 330/380 (86%), Gaps = 42/380 (11%)

Query: 1   MFQNDLHRAMQKSQSALSQQLMILSATFVC-------GIQHFQRAGHRHLNLFQATYYVV 53
           MF NDLHRAMQKSQSALSQQL ILSAT VC       GIQHFQRAGHRHLNLFQATYYVV
Sbjct: 202 MF-NDLHRAMQKSQSALSQQLTILSATLVCLVFTSVCGIQHFQRAGHRHLNLFQATYYVV 260

Query: 54  VTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQ 113
           VTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQ
Sbjct: 261 VTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQ 320

Query: 114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRV 173
           SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQ+YYVVLLSPMELDTTMRMILQVPIWAQRV
Sbjct: 321 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQDYYVVLLSPMELDTTMRMILQVPIWAQRV 380

Query: 174 IYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYV 233
           IYIQGSCLKDGDLARARMNEAEACFVLAARNY+DKTAADEHTILRSWAVKDFAP+V QYV
Sbjct: 381 IYIQGSCLKDGDLARARMNEAEACFVLAARNYADKTAADEHTILRSWAVKDFAPNVAQYV 440

Query: 234 QIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEW 293
           QIFRPENK+HVKFAE++VCEDE KYALLANNCTCPGASTLVTLLLHTSRGQEGQ SQEEW
Sbjct: 441 QIFRPENKIHVKFAEYVVCEDEFKYALLANNCTCPGASTLVTLLLHTSRGQEGQQSQEEW 500

Query: 294 HRLYGRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEY 353
           HRLYGRCSGNEIYHI L DSRFF                                  GEY
Sbjct: 501 HRLYGRCSGNEIYHITLGDSRFF----------------------------------GEY 526

Query: 354 EGKSFTYASFHSHRKYGMKI 373
           EGKSFTYASFHSHRKYG+ +
Sbjct: 527 EGKSFTYASFHSHRKYGVAL 546

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|91077962\|ref\|XP_967569.1\| PREDICTED: similar to AGAP007585-PA [Tribolium castaneum]	Back alignment and taxonomy information

>gi\|242023096\|ref\|XP_002431972.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212517323\|gb\|EEB19234.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|307191754\|gb\|EFN75196.1\| Potassium channel subfamily T member 1 [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|345497360\|ref\|XP_003427969.1\| PREDICTED: potassium channel subfamily T member 1-like [Nasonia vitripennis]	Back alignment and taxonomy information

>gi\|380016836\|ref\|XP_003692378.1\| PREDICTED: potassium channel subfamily T member 1-like [Apis florea]	Back alignment and taxonomy information

>gi\|383853820\|ref\|XP_003702420.1\| PREDICTED: potassium channel subfamily T member 1-like [Megachile rotundata]	Back alignment and taxonomy information

>gi\|442623193\|ref\|NP_001260863.1\| CG42732, isoform N [Drosophila melanogaster] gi\|440214266\|gb\|AGB93396.1\| CG42732, isoform N [Drosophila melanogaster]	Back alignment and taxonomy information

>gi\|340729267\|ref\|XP_003402927.1\| PREDICTED: potassium channel subfamily T member 1-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|198457879\|ref\|XP_001360824.2\| GA11894 [Drosophila pseudoobscura pseudoobscura] gi\|198136139\|gb\|EAL25399.2\| GA11894 [Drosophila pseudoobscura pseudoobscura]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		695
FB\|FBgn0261698		1878	CG42732 [Drosophila melanogast	0.476	0.176	0.892	1.6e-252
UNIPROTKB\|Q8QFV0		1201	KCNT1 "Potassium channel subfa	0.474	0.274	0.625	8.6e-188
UNIPROTKB\|F1MUE0		1185	KCNT1 "Uncharacterized protein	0.474	0.278	0.616	2.6e-182
UNIPROTKB\|Q5JUK3		1230	KCNT1 "Potassium channel subfa	0.474	0.268	0.616	7e-182
UNIPROTKB\|C9J9Y7		1215	KCNT1 "Potassium channel subfa	0.474	0.271	0.616	8.9e-182
UNIPROTKB\|C9JAX7		1235	KCNT1 "Potassium channel subfa	0.474	0.267	0.616	8.9e-182
UNIPROTKB\|C9JYL2		1223	KCNT1 "Potassium channel subfa	0.474	0.269	0.616	8.9e-182
UNIPROTKB\|C9JZ51		1237	KCNT1 "Potassium channel subfa	0.474	0.266	0.616	8.9e-182
UNIPROTKB\|E2QW02		1237	KCNT1 "Uncharacterized protein	0.474	0.266	0.614	1.4e-181
UNIPROTKB\|F1PE73		1223	KCNT1 "Uncharacterized protein	0.474	0.269	0.614	1.4e-181

FB\|FBgn0261698 CG42732 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1578 (560.5 bits), Expect = 1.6e-252, Sum P(2) = 1.6e-252
 Identities = 306/343 (89%), Positives = 318/343 (92%)

Query:     1 MFQNDLHRAMQKSQSALSQQLMILSATF-------VCGIQHFQRAGHRHLNLFQATYYVV 53
             MF NDLHRAMQKSQSALSQQL ILSAT        VCGIQHFQRAGHRHLNLFQ+TYYVV
Sbjct:   272 MF-NDLHRAMQKSQSALSQQLTILSATLLCLVFTSVCGIQHFQRAGHRHLNLFQSTYYVV 330

Query:    54 VTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQ 113
             VTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQ
Sbjct:   331 VTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQ 390

Query:   114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRV 173
             SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQ++YVVLLSPMELDTTMRMILQVPIWAQRV
Sbjct:   391 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQDFYVVLLSPMELDTTMRMILQVPIWAQRV 450

Query:   174 IYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYV 233
             IYIQGSCLKDGDLARARMNEAEACF+LAARNY+DKTAADEHTILRSWAVKDFAP+VPQYV
Sbjct:   451 IYIQGSCLKDGDLARARMNEAEACFILAARNYADKTAADEHTILRSWAVKDFAPNVPQYV 510

Query:   234 QIFRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEW 293
             QIFRPE+KLHVKFAE +VCEDE KYALLANNCTCPGASTLVTLLLHTSRGQEGQ S EEW
Sbjct:   511 QIFRPEHKLHVKFAEHVVCEDEFKYALLANNCTCPGASTLVTLLLHTSRGQEGQQSPEEW 570

Query:   294 HRLYGRCSGNEIYHILLADSRFFGE-EGQ---ISQEEWHRLYG 332
             HRLYG+CSGNEIYHI+L DSRFFGE EG+    +    HR YG
Sbjct:   571 HRLYGKCSGNEIYHIVLGDSRFFGEYEGKSFTYASFHSHRKYG 613

GO:0005267 "potassium channel activity" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0015269 "calcium-activated potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB\|Q8QFV0 KCNT1 "Potassium channel subfamily T member 1" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MUE0 KCNT1 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q5JUK3 KCNT1 "Potassium channel subfamily T member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|C9J9Y7 KCNT1 "Potassium channel subfamily T member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|C9JAX7 KCNT1 "Potassium channel subfamily T member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|C9JYL2 KCNT1 "Potassium channel subfamily T member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|C9JZ51 KCNT1 "Potassium channel subfamily T member 1" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2QW02 KCNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PE73 KCNT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8QFV0	KCNT1_CHICK	No assigned EC number	0.55	0.5079	0.2939	yes	N/A
Q5JUK3	KCNT1_HUMAN	No assigned EC number	0.5866	0.4791	0.2707	yes	N/A
Q6UVM4	KCNT2_RAT	No assigned EC number	0.5786	0.4892	0.2977	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		695
pfam03493		101	pfam03493, BK_channel_a, Calcium-activated BK pota	4e-30
pfam07885		74	pfam07885, Ion_trans_2, Ion channel	4e-07
PRK10537		393	PRK10537, PRK10537, voltage-gated potassium channe	0.002

>gnl\|CDD\|202668 pfam03493, BK_channel_a, Calcium-activated BK potassium channel alpha subunit	Back alignment and domain information

 Score =  113 bits (286), Expect = 4e-30
 Identities = 45/134 (33%), Positives = 59/134 (44%), Gaps = 39/134 (29%)

Query: 238 PENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLY 297
            EN  H  FA+ ++C +ELK ALLA +C CPG STL+T L  +S  Q G  S++ W + Y
Sbjct: 1   YENSWHWSFADQVICVEELKLALLAKSCLCPGISTLITNLFTSSSPQVGDPSKDNWIKEY 60

Query: 298 GRCSGNEIYHILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKS 357
            R SGNEIY I L  S F                                       G S
Sbjct: 61  LRGSGNEIYTIPL-PSAF--------------------------------------VGLS 81

Query: 358 FTYASFHSHRKYGM 371
           FT  +   ++K G+
Sbjct: 82  FTQVARLLYKKLGV 95

Length = 101

>gnl\|CDD\|219619 pfam07885, Ion_trans_2, Ion channel	Back alignment and domain information

>gnl\|CDD\|236711 PRK10537, PRK10537, voltage-gated potassium channel; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		695
KOG3193\|consensus		1087		100.0
KOG1420\|consensus		1103		100.0
PRK10537		393	voltage-gated potassium channel; Provisional	99.97
PRK09496		453	trkA potassium transporter peripheral membrane com	99.78
PF03493		101	BK_channel_a: Calcium-activated BK potassium chann	99.77
PRK10669		558	putative cation:proton antiport protein; Provision	99.45
PRK09496		453	trkA potassium transporter peripheral membrane com	99.39
PF02254		116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	99.36
PF07885		79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.35
COG0569		225	TrkA K+ transport systems, NAD-binding component [	99.35
PRK03659		601	glutathione-regulated potassium-efflux system prot	99.29
PF06241		206	DUF1012: Protein of unknown function (DUF1012); In	99.27
PRK03562		621	glutathione-regulated potassium-efflux system prot	99.22
KOG3713\|consensus		477		99.18
KOG1420\|consensus		1103		99.06
KOG1419\|consensus		654		99.0
KOG1545\|consensus		507		98.86
KOG4404\|consensus		350		98.71
PLN03192		823	Voltage-dependent potassium channel; Provisional	98.67
COG1226		212	Kch Kef-type K+ transport systems, predicted NAD-b	98.45
KOG1418\|consensus		433		98.27
KOG4390\|consensus		632		98.25
PF01007		336	IRK: Inward rectifier potassium channel; InterPro:	98.02
PF06241		206	DUF1012: Protein of unknown function (DUF1012); In	97.96
KOG0498\|consensus		727		97.9
KOG4404\|consensus		350		97.7
KOG0501\|consensus		971		97.68
KOG1418\|consensus		433		97.43
KOG3684\|consensus		489		97.36
PRK10537		393	voltage-gated potassium channel; Provisional	97.05
KOG3827\|consensus		400		96.69
KOG3193\|consensus		1087		96.56
PF02254		116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.11
COG0490		162	Putative regulatory, ligand-binding protein relate	96.06
PF00520		200	Ion_trans: Ion transport protein calcium channel s	95.66
COG0569		225	TrkA K+ transport systems, NAD-binding component [	95.03
PF03493		101	BK_channel_a: Calcium-activated BK potassium chann	94.03
KOG0499\|consensus		815		92.32
KOG0500\|consensus		536		91.48
PF02080		71	TrkA_C: TrkA-C domain; InterPro: IPR006037 The reg	91.2
PRK03659		601	glutathione-regulated potassium-efflux system prot	90.49
COG3273		204	Uncharacterized conserved protein [Function unknow	87.93
PRK10669		558	putative cation:proton antiport protein; Provision	86.23
PRK06719		157	precorrin-2 dehydrogenase; Validated	85.31
PF00060		148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	85.22
PRK03562		621	glutathione-regulated potassium-efflux system prot	84.52
KOG4440\|consensus		993		81.14

>KOG3193\|consensus	Back alignment and domain information

Probab=100.00  E-value=5.3e-125  Score=980.24  Aligned_cols=648  Identities=49%  Similarity=0.832  Sum_probs=585.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhccCCCCCChhhhhhheeeeeeccCcCCcccCCcccchhH
Q psy8620           3 QNDLHRAMQKSQSALSQQLMILSATF-------VCGIQHFQRAGHRHLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYM   75 (695)
Q Consensus         3 ~~~~~~~~~r~~~~l~~~l~il~~~l-------~~g~~~~~~~~~~~~~~~da~Yf~vvT~sTVGYGDi~P~t~~gri~~   75 (695)
                      |||++|.++..++++++++++++.++       +||+.++.+++....++|.++||+|||+|||||||.+|.-|++++.+
T Consensus       169 mndl~r~~~~s~sal~~ql~ll~s~l~clift~~c~i~h~qra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~  248 (1087)
T KOG3193|consen  169 MNDLNRKSFISSSALFRQLLLLFSVLACLIFTGMCSIEHLQRARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCV  248 (1087)
T ss_pred             hhhHhHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHccCceeeeeeeEEEEEEEEeeccccccccccchhhHHH
Confidence            79999999999999999998876654       67899999988889999999999999999999999999999999999


Q ss_pred             HHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCC
Q psy8620          76 VIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME  155 (695)
Q Consensus        76 i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e  155 (695)
                      +++|+++++++|.++..++..|.+|++.++.|+..+ ..+.|||||-....++.+.+||.|||+||..++..||+++|.|
T Consensus       249 vi~icval~~ip~q~~~l~~tw~erqk~g~~~ss~~-~~e~hvvv~~ttl~~~~i~dfl~efyahp~~q~~~ivllsp~e  327 (1087)
T KOG3193|consen  249 VILICVALGLIPKQLDELGQTWSERQKSGTDFSSWN-GVESHVVVTITTLEVEFIRDFLEEFYAHPENQRIQIVLLSPAE  327 (1087)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHhhcCCCccccc-cccceEEEEEeeeeHHHHHHHHHHHhcCcccccEEEEEechHH
Confidence            999999999999999999999999999999998654 4789999999989999999999999999999999999999999


Q ss_pred             ccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEE
Q psy8620         156 LDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQI  235 (695)
Q Consensus       156 ~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i  235 (695)
                      ++...+.+++.|.|..+|.|++|+.++++||+||++..|+|||||+.++..+..+.|.+||++.|++|+++|+++.++|+
T Consensus       328 ld~~~rmllkiplwnnrvhyv~gs~lrd~dl~ra~~~~s~acfilsar~~~~k~a~dehtilrswaikdfapnv~qyvqi  407 (1087)
T KOG3193|consen  328 LDNQTRMLLKIPLWNNRVHYVRGSSLRDEDLERANVATSKACFILSARHVNRKVATDEHTILRSWAIKDFAPNVKQYVQI  407 (1087)
T ss_pred             hcchhhhheeccccccceeeecccccccchhhhhhhcccchheeeehhhhccccccchhhHHHHHhhhhcCCchHHHhhh
Confidence            99999999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             eCccchhhccCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCceeeeecccccc
Q psy8620         236 FRPENKLHVKFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRF  315 (695)
Q Consensus       236 ~~~~~~~~~~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy~~~ls~~~~  315 (695)
                      ..+|.|.|++.|+.+||.+|+|..|||++|.|||++++++.|+++++|++++...++|.+.|+.+               
T Consensus       408 fr~e~k~hi~~ae~~icedefkyallannc~cpg~st~itll~htsrg~egq~s~e~whk~yg~~---------------  472 (1087)
T KOG3193|consen  408 FRAETKMHIEHAEVLICEDEFKYALLANNCICPGISTFITLLMHTSRGEEGQKSTEPWHKVYGFH---------------  472 (1087)
T ss_pred             hchhhhhhhhhheeEEehhhHHHHHHhcCCcCCCHHHHHHHHhhhccccccCCCCchHHHHhccc---------------
Confidence            99999999999999999999999999999999999999999999999999988888888877755               


Q ss_pred             ccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec-------ceEEEecccceec
Q psy8620         316 FGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK-------DDMWIRTYGRLYQ  388 (695)
Q Consensus       316 ~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig-------~~i~lNP~~~~i~  388 (695)
                                         +|||||++++++|+||.+|+||+|..+++|.+++||+.++|       +++.||||+.+|+
T Consensus       473 -------------------sgne~y~i~~~dskff~ey~gksfs~~sfhahk~ygi~li~v~p~~~~~~~~lnpg~~hi~  533 (1087)
T KOG3193|consen  473 -------------------SGNEMYQIKVQDSKFFCEYVGKSFSSTSFHAHKEYGIGLIAVSPDGDTSRMKLNPGSSHII  533 (1087)
T ss_pred             -------------------cCCeEEEEEecccceeeeecccccchhhhhhhhhcCeEEEEEcCCCCcceeecCCCccccc
Confidence                               99999999999999999999999999999999999999997       5799999999999


Q ss_pred             ccCCCeeeecccccc----------------------------------cCCCCc-------------------ccCCCC
Q psy8620         389 KLCSTTCEIPIGIYR----------------------------------TQDMSS-------------------IESPQP  415 (695)
Q Consensus       389 ~~~~~~~~~~~~~~~----------------------------------~~~~~~-------------------~~~~~~  415 (695)
                      + ++|+|.++.-.++                                  +.|..+                   ++..+.
T Consensus       534 ~-~~dt~yym~lt~ee~~td~r~g~~s~~~~a~~a~t~a~i~tv~v~vp~sd~t~~~grk~~~~~~~aa~~~hl~~~g~h  612 (1087)
T KOG3193|consen  534 Q-PTDTVYYMGLTNEESLTDFRKGIRSQQKRANVASTIANIGTVAVDVPRSDKTELVGRKKKKRKEKAADEIHLIEVGEH  612 (1087)
T ss_pred             C-CCCeEEEEecccccchhhhhhhhhhhhhhhhhhhhhhcccceEEecCCCCCCcccccccchhhhhccCceEEEeeccc
Confidence            9 6999977532110                                  000000                   000112


Q ss_pred             CCCCCCCCcccCC-----C--CCccc--------------ccccccccccccc---hhhhhhhcccccc--------c--
Q psy8620         416 RESNPRPSAHKAD-----A--PPSKL--------------TRLAFYSVEFYLF---SLDDLLRAGILLA--------E--  461 (695)
Q Consensus       416 ~~~~~~p~i~~~~-----~--~~~~~--------------~i~G~~~~~~~i~---~l~~ll~~~~~~~--------~--  461 (695)
                      -..++||+|+..+     +  +.++-              +--.+|++.++||   ++|+++|+++++|        .  
T Consensus       613 ~~~srrpsi~m~teg~idss~ds~qee~cd~crg~~~~~~lqr~~p~v~~~ig~s~t~c~~~kerr~lccl~l~~~c~h~  692 (1087)
T KOG3193|consen  613 VQSSRRPSIAMVTEGKIDSSSDSDQEEICDKCRGPCIQHKLQRTYPQVRTYIGTSNTVCHMMKERRSLCCLKLDEKCAHK  692 (1087)
T ss_pred             cccccCCceEEEecccccCccccchhHhhhhhccHHHHHHHHhhCCCcccccccchHHHHHHhccccchhhhhHhHhhhc
Confidence            2236789886441     1  11111              1124899999999   9999999988864        2  


Q ss_pred             ------ceeecceeeecc----------------ccccccccCCceehh-h----------HHhhhccCCceEEec----
Q psy8620         462 ------NVVVVNKELSNS----------------AEEDTLADCNTIVAV-Q----------KLTSLAFYSVEFYLF----  504 (695)
Q Consensus       462 ------~~~~~~~~~~l~----------------~~~~~~~~~~~iv~~-~----------~~~~~~~fp~v~~~~----  504 (695)
                            .|.|+|+.++++                +++|+.++++||+++ +          +|+.+++||.||||.    
T Consensus       693 s~~~a~eyqw~nr~iilaad~~s~g~yn~viplra~~r~~~~l~piiille~~~qdsl~~afldaisyfp~vywm~g~v~  772 (1087)
T KOG3193|consen  693 SATSAHEYQWRNRPIILAADRTSSGMYNLVIPLRAYYRPVHDLHPIIILLELEEQDSLNDAFLDAISYFPDVYWMKGKVG  772 (1087)
T ss_pred             cccchhhhhhcCCceEEEeccccCcceEEEEehhhhcccccccCceEEEEecccccchhHHHHHHHHhcchhhhhhcCcC
Confidence                  388887766654                477899999999988 2          788999999999998    


Q ss_pred             ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHHhcCCCcEEEeecccccccccccccchhHHHhhhh
Q psy8620         505 SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSK  584 (695)
Q Consensus       505 ~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~  584 (695)
                      +.|+|+||||..|++|||+ ++.+.+.+ ++.+|++||++++.|+++||+++.||||++++||+|+||.++|.|++++|+
T Consensus       773 ~ld~llragvs~ae~vvvv-ke~a~~ae-e~tadcntii~vq~~~r~fp~lr~itelt~atnmrf~qf~~h~~ysl~~sr  850 (1087)
T KOG3193|consen  773 NLDCLLRAGVSSAEHVVVV-KETAVMAE-EHTADCNTIITVQKIHRMFPRLRMITELTHATNMRFVQFNPHNAYSLAQSR  850 (1087)
T ss_pred             cHHHHHHhcccccceEEEE-ehhhhhhh-hhccccchhhhHHHHHHhchhHHHHHHHhhhccceEEeecCcchhHHHHHH
Confidence            9999999999999999999 66555544 444999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhhcCCcccccccccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCCCCcceeeeeeCCCccCCCcHHH
Q psy8620         585 MEKKEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAPGSGFLTSMKITKDDMWIRTYGR  664 (695)
Q Consensus       585 ~~~~~~~~~~~~~~~~~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~~~~~l~~~~i~~~~~~~~tf~~  664 (695)
                      |||+|+++|+|++||||.|||+|.|||.+|||+||||++.+|++++++|.|+|.++.+|+|+|+++.++.+|+|++|||+
T Consensus       851 ~ekker~rgsh~~~mfrlpfa~g~vfsa~mld~llyqa~ik~~vv~~vrlllgidq~~~~g~lts~~it~dd~wir~ygr  930 (1087)
T KOG3193|consen  851 FEKKERKRGSHMPFMFRLPFAQGGVFSANMLDRLLYQAIIKPFVVDLVRLLLGIDQHSDGGYLTSFVITSDDLWIRNYGR  930 (1087)
T ss_pred             HHHHHhhccCCCceEEeccccccceeeHHHHHHHHHHHHhhHHHHHHHHHHhccccCCCCceEEEEEEeccchhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCceeeEEEeecCCCC
Q psy8620         665 LYQKLCSTTCEIPIGIYRTQDMSS  688 (695)
Q Consensus       665 lf~~ll~~~~~i~iGlyR~~~~~~  688 (695)
                      |||+||++.+.|||||||+++++.
T Consensus       931 lyqklcss~~~ipigi~rt~~~~~  954 (1087)
T KOG3193|consen  931 LYQKLCSSVADIPIGIFRTKKMDT  954 (1087)
T ss_pred             HHHHHhhhhcccceeeeeeccccc
Confidence            999999999999999999998863

>KOG1420\|consensus	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed	Back alignment and domain information

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []	Back alignment and domain information

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>KOG3713\|consensus	Back alignment and domain information

>KOG1420\|consensus	Back alignment and domain information

>KOG1419\|consensus	Back alignment and domain information

>KOG1545\|consensus	Back alignment and domain information

>KOG4404\|consensus	Back alignment and domain information

>PLN03192 Voltage-dependent potassium channel; Provisional	Back alignment and domain information

>COG1226 Kch Kef-type K+ transport systems, predicted NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>KOG1418\|consensus	Back alignment and domain information

>KOG4390\|consensus	Back alignment and domain information

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]	Back alignment and domain information

>PF06241 DUF1012: Protein of unknown function (DUF1012); InterPro: IPR010420 This entry represents the CASTOR/POLLUX/SYM8 family of ion channels, which are found in plants	Back alignment and domain information

>KOG0498\|consensus	Back alignment and domain information

>KOG4404\|consensus	Back alignment and domain information

>KOG0501\|consensus	Back alignment and domain information

>KOG1418\|consensus	Back alignment and domain information

>KOG3684\|consensus	Back alignment and domain information

>PRK10537 voltage-gated potassium channel; Provisional	Back alignment and domain information

>KOG3827\|consensus	Back alignment and domain information

>KOG3193\|consensus	Back alignment and domain information

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>COG0490 Putative regulatory, ligand-binding protein related to C-terminal domains of K+ channels [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins	Back alignment and domain information

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]	Back alignment and domain information

>PF03493 BK_channel_a: Calcium-activated BK potassium channel alpha subunit; InterPro: IPR003929 Potassium channels are the most diverse group of the ion channel family [, ]	Back alignment and domain information

>KOG0499\|consensus	Back alignment and domain information

>KOG0500\|consensus	Back alignment and domain information

>PF02080 TrkA_C: TrkA-C domain; InterPro: IPR006037 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus	Back alignment and domain information

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional	Back alignment and domain information

>COG3273 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PRK10669 putative cation:proton antiport protein; Provisional	Back alignment and domain information

>PRK06719 precorrin-2 dehydrogenase; Validated	Back alignment and domain information

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory	Back alignment and domain information

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional	Back alignment and domain information

>KOG4440\|consensus	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		695
3naf_A		798	Structure Of The Intracellular Gating Ring From The		1e-17
3u6n_A		696	Open Structure Of The Bk Channel Gating Ring Length		7e-14
3mt5_A		726	Crystal Structure Of The Human Bk Gating Apparatus		9e-14
4hpf_A		722	Structure Of The Human Slo3 Gating Ring Length = 72		5e-11

>pdb|3NAF|A Chain A, Structure Of The Intracellular Gating Ring From The Human High- Conductance Ca2+ Gated K+ Channel (Bk Channel) Length = 798

Back alignment and structure

Iteration: 1

Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 17/228 (7%) Query: 99 ERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLLQ-NYYVVLLSPMELD 157 ER+K GGSYS+ KH+VVC + +++ +FL +F N +V L + + Sbjct: 39 ERKKYGGSYSA--VSGRKHIVVCGH-ITLESVSNFLKDFLHKDRDDVNVEIVFLHNISPN 95 Query: 158 TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTIL 217 + + + +V + QGS L DLAR ++ A+AC +LA + +D A D I+ Sbjct: 96 LELEALFKRHF--TQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIM 153 Query: 218 RSWAVKDFAPDVPQYVQIFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPG 269 R ++K++ P + Q+ + NK H+ K + +C ELK +A +C G Sbjct: 154 RVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQG 213 Query: 270 ASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIYHILLADSRFFG 317 ST++ L S +I ++ W + Y NE+Y L+ S F G Sbjct: 214 LSTMLANLF--SMRSFIKIEEDTWQKYYLEGVSNEMYTEYLS-SAFVG 258

PyMOL of 3naf

>pdb|3U6N|A Chain A, Open Structure Of The Bk Channel Gating Ring Length = 696

Back alignment and structure

>pdb|3MT5|A Chain A, Crystal Structure Of The Human Bk Gating Apparatus Length = 726

Back alignment and structure

>pdb|4HPF|A Chain A, Structure Of The Human Slo3 Gating Ring Length = 722

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		695
3mt5_A		726	Potassium large conductance calcium-activated CHA	1e-80
3mt5_A		726	Potassium large conductance calcium-activated CHA	1e-15
3naf_A		798	Calcium-activated potassium channel subunit alpha;	3e-55
3naf_A		798	Calcium-activated potassium channel subunit alpha;	2e-30
3naf_A		798	Calcium-activated potassium channel subunit alpha;	3e-13
3naf_A		798	Calcium-activated potassium channel subunit alpha;	5e-04
1lnq_A		336	MTHK channels, potassium channel related protein;	2e-22
3ldc_A		82	Calcium-gated potassium channel MTHK; transmembran	3e-06
3ouf_A		97	Potassium channel protein; ION channel, membrane,	4e-06
2q67_A		114	Potassium channel protein; inverted teepee, helix	4e-06
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	1e-05
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	4e-05
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	9e-05
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	1e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2a9h_A		155	Voltage-gated potassium channel; potassium channel	3e-04
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	3e-04
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	3e-04
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	5e-04
3pjs_K		166	KCSA, voltage-gated potassium channel; ION channel	6e-04
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	7e-04

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Length = 726	Back alignment and structure

 Score =  270 bits (690), Expect = 1e-80
 Identities = 129/691 (18%), Positives = 226/691 (32%), Gaps = 117/691 (16%)

Query: 115 EKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPMELDTTMRMILQVPIWAQRVI 174
            KH+VVC   +  +++ +FL +F  H    +  V ++    +   + +         +V 
Sbjct: 3   RKHIVVCGH-ITLESVSNFLKDFL-HKDRDDVNVEIVFLHNISPNLELEALFKRHFTQVE 60

Query: 175 YIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQ 234
           + QGS L   DLAR ++  A+AC +LA +  +D  A D   I+R  ++K++ P +    Q
Sbjct: 61  FYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQ 120

Query: 235 IFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEG 286
           + +  NK H+        K  +  +C  ELK   +A +C   G ST++  L         
Sbjct: 121 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSFI-- 178

Query: 287 QISQEEWHRLYGRCSGNEIYHILLADS---RFFGEEGQISQEEWHRL---YGRCSGNEIY 340
           +I ++ W + Y     NE+Y   L+ +     F    ++   +   L       S N   
Sbjct: 179 KIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLLMIAIEYKSANRES 238

Query: 341 HILLADSRFFGEYEG--------KSFTYASFHSHRKYGMKITKDDMWIRTYGRLYQKLCS 392
            IL+         EG         +        + K       D   I+  G    +   
Sbjct: 239 RILINPGNHLKIQEGTLGFFIASDAKEVKRAFFYCKACHDDITDPKRIKKCGCKRLEDEQ 298

Query: 393 TTCEIPIGIYRTQDMSSIESPQPRESNPRPSAHKADAPPSKLTRLAFYSVEFYLFSLDD- 451
            +   P    R   M +  +  P+     P     +     +           +F     
Sbjct: 299 PSTLSPKKKQRNGGMRNSPNTSPKLMRHDPLLIPGNDQIDNMDSNVKKYDSTGMFHWCAP 358

Query: 452 ----------LLRAGILLAENVVVVNKELSNSAEED-------------TLADCNTIVAV 488
                        A  +L+ +VVV      +SA                   +   IV V
Sbjct: 359 KEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFV 418

Query: 489 QKLTSLA-----------FYSVEFYLFSLDDLLRAGILLAENVVVVNKELSNSAEEDTLA 537
             +  L               +     S  DL    I L +  V+++    N+ ++ +L 
Sbjct: 419 GSIEYLKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSAN-QNNIDDTSLQ 477

Query: 538 DCNTIVAVQTM--FKFFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEK-------- 587
           D   I+A   +   +F   I  +   SQ      M   + D   +H    +         
Sbjct: 478 DKECILASLNIKSMQFDDSIGVLQANSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNI 537

Query: 588 ----------------KEKERGSHISYMFRLPFAAGSVFSASMLDTLLYQAFVKDYVITF 631
                           ++ +           PFA G+ F+ S+LD+L+   +  D ++T 
Sbjct: 538 PIITELVNDTNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTL 597

Query: 632 IRLLLGVDQAP------------GSGFLTSMKITKDD-----------------MWIRTY 662
           IR L+     P              G+ T   +   D                      Y
Sbjct: 598 IRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDGPFADLGDGGCY 657

Query: 663 GRLYQKLCSTTCEIPIGIYRTQDMSSIESPQ 693
           G L+ K   T   +  GIYR +D       Q
Sbjct: 658 GDLFCKALKTYNMLCFGIYRLRDAHLSTPSQ 688

PyMOL of 3mt5

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A Length = 726	Back alignment and structure

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798	Back alignment and structure

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798	Back alignment and structure

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798	Back alignment and structure

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens} Length = 798	Back alignment and structure

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336	Back alignment and structure

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Length = 280	Back alignment and structure

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		695
3naf_A		798	Calcium-activated potassium channel subunit alpha;	100.0
3mt5_A		726	Potassium large conductance calcium-activated CHA	100.0
4hpf_A		722	Potassium channel subfamily U member 1; PH-gated,	100.0
4gx0_A		565	TRKA domain protein; membrane protein, ION channel	100.0
1lnq_A		336	MTHK channels, potassium channel related protein;	100.0
2aef_A		234	Calcium-gated potassium channel MTHK; rossmann fol	99.72
3mt5_A		726	Potassium large conductance calcium-activated CHA	99.68
3naf_A		798	Calcium-activated potassium channel subunit alpha;	99.67
4g65_A		461	TRK system potassium uptake protein TRKA; structur	99.61
4h33_A		137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.56
4gx0_A		565	TRKA domain protein; membrane protein, ION channel	99.53
3l4b_C		218	TRKA K+ channel protien TM1088B; potassium channel	99.53
4hpf_A		722	Potassium channel subfamily U member 1; PH-gated,	99.51
2k1e_A		103	Water soluble analogue of potassium channel, KCSA;	99.48
3ouf_A		97	Potassium channel protein; ION channel, membrane,	99.48
2q67_A		114	Potassium channel protein; inverted teepee, helix	99.47
2ih3_C		122	Voltage-gated potassium channel; ION channel D-ami	99.45
3fwz_A		140	Inner membrane protein YBAL; TRKA-N domain, E.coli	99.45
3vou_A		148	ION transport 2 domain protein, voltage-gated SOD	99.43
3ldc_A		82	Calcium-gated potassium channel MTHK; transmembran	99.42
1id1_A		153	Putative potassium channel protein; RCK domain, E.	99.39
3eff_K		139	Voltage-gated potassium channel; FULL length KCSA,	99.39
1p7b_A		333	Integral membrane channel and cytosolic domains; t	99.38
2a9h_A		155	Voltage-gated potassium channel; potassium channel	99.38
2qks_A		321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.34
1xl4_A		301	Inward rectifier potassium channel; integral membr	99.34
1orq_C		223	Potassium channel; voltage-dependent, KVAP, FAB co	99.25
2r9r_B		514	Paddle chimera voltage gated potassium channel KV;	99.24
3l9w_A		413	Glutathione-regulated potassium-efflux system Pro	99.2
3llv_A		141	Exopolyphosphatase-related protein; NAD(P)-binding	99.16
3pjs_K		166	KCSA, voltage-gated potassium channel; ION channel	99.13
3um7_A		309	Potassium channel subfamily K member 4; potassium	99.11
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	99.11
4g65_A		461	TRK system potassium uptake protein TRKA; structur	99.09
3beh_A		355	MLL3241 protein; transmembrane protein, membrane p	99.03
3sya_A		340	G protein-activated inward rectifier potassium CH;	99.0
3um7_A		309	Potassium channel subfamily K member 4; potassium	98.97
3ukm_A		280	Potassium channel subfamily K member 1; membrane p	98.92
3spc_A		343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.89
3c85_A		183	Putative glutathione-regulated potassium-efflux S	98.81
1lss_A		140	TRK system potassium uptake protein TRKA homolog;	98.64
2hmt_A		144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.53
2g1u_A		155	Hypothetical protein TM1088A; structural genomics,	98.5
1lnq_A		336	MTHK channels, potassium channel related protein;	98.27
3rvy_A		285	ION transport protein; tetrameric ION channel, vol	98.08
2aef_A		234	Calcium-gated potassium channel MTHK; rossmann fol	98.07
3l4b_C		218	TRKA K+ channel protien TM1088B; potassium channel	96.9
4dxw_A		229	Navrh, ION transport protein; tetrameric, voltage-	94.66
1vct_A		205	Hypothetical protein PH0236; helix rich, structura	93.43
1id1_A		153	Putative potassium channel protein; RCK domain, E.	93.24
3fwz_A		140	Inner membrane protein YBAL; TRKA-N domain, E.coli	92.45
3kg2_A		823	Glutamate receptor 2; ION channel, membrane protei	90.89
3l9w_A		413	Glutathione-regulated potassium-efflux system Pro	90.7
3llv_A		141	Exopolyphosphatase-related protein; NAD(P)-binding	84.34
3jxo_A		86	TRKA-N domain protein; TRKA K+ channel component,	81.4

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=1.3e-80  Score=712.83  Aligned_cols=547  Identities=24%  Similarity=0.347  Sum_probs=408.5

Q ss_pred             HHhHHHHHHhhccchHHHHHHHHHHHHhcCCcccccccCCceEEEEccCccHHHHHHHHHHHhcCCCC-CcceEEEecCC
Q psy8620          76 VIMICVALIVLPTQFEQLAFTWMERQKLGGSYSSHRAQSEKHVVVCSTTLHADTIMDFLNEFYAHPLL-QNYYVVLLSPM  154 (695)
Q Consensus        76 i~~i~~gi~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~-~~~~VVil~~~  154 (695)
                      +..|++|+++|++.++.+++.+.+++++.|+|..  .+.++|||||||. ....+..+|+|++++..+ .+.+|||+++.
T Consensus        16 ~~~IlgGI~lFa~~ig~liel~~~r~~~~G~y~~--~~~k~HIIIcG~~-~~~~v~~fL~El~~~~~~~~~~~IVIL~~~   92 (798)
T 3naf_A           16 LEEILSKLYHIENELARIKKLLGERKKYGGSYSA--VSGRKHIVVCGHI-TLESVSNFLKDFLHKDRDDVNVEIVFLHNI   92 (798)
T ss_dssp             --------------------------CCCSSCCC--CCSSEEEEEESCC-CHHHHHHHHHHHTCTTSCCCCEEEEEEESS
T ss_pred             heehhHHHHHHHHHHHHHHHHHHHHHhhCCcccc--ccCCCeEEEEcCC-CHHHHHHHHHHHHhhcccccCCcEEEEeCC
Confidence            5678889999999999999999998888788753  4589999999984 688999999999865433 46799999988


Q ss_pred             CccHHHHHHhcCCccccceEEEEcCCCChHhHhhcccccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEE
Q psy8620         155 ELDTTMRMILQVPIWAQRVIYIQGSCLKDGDLARARMNEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQ  234 (695)
Q Consensus       155 e~~~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~  234 (695)
                      +++.+++.+++.  +..++.|++|||+++++|+||++++|++|||++++...++..+|++|++++|++|+++|+++|+|+
T Consensus        93 ~p~~eLe~lL~~--~~~~V~fI~Gdat~~e~L~RAgI~~A~aVIIla~~~~~d~~~~Da~nIl~vLsar~lnP~i~IIa~  170 (798)
T 3naf_A           93 SPNLELEALFKR--HFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDAEDASNIMRVISIKNYHPKIRIITQ  170 (798)
T ss_dssp             CCCHHHHHHHHH--TTTTEEEEECCSSSHHHHHHTTGGGCSEEEECCCTTCSCHHHHHHHHHHHHHHHHHHSTTCCEEEE
T ss_pred             CCcHHHHHHhhc--ccCceEEEEcCCCCHHHHHhcCHhhCCEEEEECCccccCCccchHHHHHHHHHHHHHCCCCCEEEE
Confidence            887777766642  457999999999999999999999999999999987778888999999999999999999999999


Q ss_pred             EeCccchhhc--------cCCCeEEehHHHHHHHHHHHhcCCChHHHHHHHhhccCCCCCCCChhHHHHHhcCCCCCcee
Q psy8620         235 IFRPENKLHV--------KFAEFIVCEDELKYALLANNCTCPGASTLVTLLLHTSRGQEGQISQEEWHRLYGRCSGNEIY  306 (695)
Q Consensus       235 i~~~~~~~~~--------~gad~VI~~~el~~~lLa~s~~~PGl~~li~~Ll~~~~~~~~~~~~~~w~~~y~~g~~~~iy  306 (695)
                      +.+++|+.++        +|||+|||++++++++||++|.+||+++++.+|++.... . ....+.|+++|.+|      
T Consensus       171 ~~~~en~~~L~~~~sw~~AGAd~VI~~~el~g~LLAqs~l~PGls~~i~~LLs~~~~-~-~~~~~~Wi~eY~~g------  242 (798)
T 3naf_A          171 MLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSCLAQGLSTMLANLFSMRSF-I-KIEEDTWQKYYLEG------  242 (798)
T ss_dssp             ESCTTGGGSGGGCTTCCTTTTCEEEEHHHHHHHHHHHHHHSTTHHHHHHHHHSCCCC-C-CCCSCSHHHHHHHH------
T ss_pred             ECCHhHHHHHHhcccchhcCCCEEEehHHHHHHHHHHHhcCCCHHHHHHHHhccccc-c-ccchhHHHHHHhcc------
Confidence            9999998654        489999999999999999999999999999999987321 1 12346777777666      


Q ss_pred             eeeccccccccccCcchhhhhhhhhccccCCeeEEEeccCCcccccccCcchhHHHhhhhhhhcceeec---------ce
Q psy8620         307 HILLADSRFFGEEGQISQEEWHRLYGRCSGNEIYHILLADSRFFGEYEGKSFTYASFHSHRKYGMKITK---------DD  377 (695)
Q Consensus       307 ~~~ls~~~~~~~~~~l~~~e~~~~~~~~~g~eiy~i~l~~s~~~~~~~G~tf~~~~~~~~~~~gi~lig---------~~  377 (695)
                                                  .|+|+|.+.+++     .+.|+||.|++..+++++|++++|         |+
T Consensus       243 ----------------------------~g~Eiy~v~l~s-----~~~G~Tf~ea~~~lr~k~gaiLIGI~r~~~~~~g~  289 (798)
T 3naf_A          243 ----------------------------VSNEMYTEYLSS-----AFVGLSFPTVCELCFVKLKLLMIAIEYKSANRESR  289 (798)
T ss_dssp             ----------------------------HTBCCEEEECCG-----GGTTCBHHHHHHHHHHHTCCCEEEEEEECSSSCEE
T ss_pred             ----------------------------cCcEEEEEeCCc-----ccCCCCHHHHHHHHHHhCCEEEEEEEeccCCCCCe
Confidence                                        778888887754     689999999998999999999886         26


Q ss_pred             EEEecccceecccCCCeeeecccccc-------------cCCCC---cccCCCCCCCC----CCCCcccC-------CCC
Q psy8620         378 MWIRTYGRLYQKLCSTTCEIPIGIYR-------------TQDMS---SIESPQPRESN----PRPSAHKA-------DAP  430 (695)
Q Consensus       378 i~lNP~~~~i~~~~~~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~~----~~p~i~~~-------~~~  430 (695)
                      +++||++++++. ++|.+++ ++.+.             |.|+.   .++.|.+....    ..|.....       ++.
T Consensus       290 iilNP~~d~~L~-~GD~Liv-Ia~~~~~vk~a~~yc~~ch~~~~~~e~i~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~  367 (798)
T 3naf_A          290 ILINPGNHLKIQ-EGTLGFF-IASDAKEVKRAFFYCKACHXXXXXXXXXXXXXXXXSPKLMRHDPLLIPGNDQIDNMDSN  367 (798)
T ss_dssp             EEESCCTTCBCC-TTCEEEE-CCBTTTGGGGGGSCSSCCCCCGGGGGGSCCSCCCCCCCCCCCC----------------
T ss_pred             EEECCCCCCEEC-CCCEEEE-EeCCHHHHHHHHHHHHhccccccccccccccccccCccccccCcccccccccccchhhh
Confidence            999999999998 5888754 44321             22221   12223222110    01111101       122


Q ss_pred             Ccccccccccccccccc-hhhhhhh---cccccccce-------------eecceeeeccccccccccCCceehhh----
Q psy8620         431 PSKLTRLAFYSVEFYLF-SLDDLLR---AGILLAENV-------------VVVNKELSNSAEEDTLADCNTIVAVQ----  489 (695)
Q Consensus       431 ~~~~~i~G~~~~~~~i~-~l~~ll~---~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~~~iv~~~----  489 (695)
                      ..+.+.+|+++|++-.. +-+.+.+   +...|.+|+             ++.++.+|+++++.+.++++|||+++    
T Consensus       368 ~~~~d~~g~fhw~~~~~~~~~~l~~~~~~~~~~~nHivvC~~~~~~~~~~gl~~fv~PLRa~~~~~~~l~~IVil~~~~~  447 (798)
T 3naf_A          368 VKKYDSTGMFHWCAPKEIEKVILTRSEAAMTVLSGHVVVCIFGDVSSALIGLRNLVMPLRASNFHYHELKHIVFVGSIEY  447 (798)
T ss_dssp             -CCBCTTSCSBCCCCCCGGGTBCCHHHHHHSCCCSCEEEEEECCSSSCCCCTHHHHHHHHCSSSCSTTCCCEEEEBCHHH
T ss_pred             hhhhccccceeecCCCchhHhhcchhhhhhhccCCCEEEEEecCCCcchhhhHHhhhhhhcccCCccccCCEEEECCCCc
Confidence            34677889888887664 3222322   234566774             35667889999999999999999993    


Q ss_pred             ---HHhhhccCCceEEec----ChhHHHHhcccccCeEEEEecCCCCCcccCcccchHHHHHHHHHHH------------
Q psy8620         490 ---KLTSLAFYSVEFYLF----SLDDLLRAGILLAENVVVVNKELSNSAEEDTLADCNTIVAVQTMFK------------  550 (695)
Q Consensus       490 ---~~~~~~~fp~v~~~~----~~~~L~~a~i~~a~~vvil~~~~~~~~~~~~~~D~~tI~~~~~i~~------------  550 (695)
                         .|+.+++||+|||+.    +.+||+||||+.|++||||+++... .+++.++|+++||++.+++.            
T Consensus       448 ~~~~w~~i~~Fp~Vy~v~Gspl~~~dL~~anI~~a~~~VIls~~~~~-~~~~~l~D~~~il~~lni~~m~~~~s~~~~~~  526 (798)
T 3naf_A          448 LKREWETLHNFPKVSILPGTPLSRADLRAVNINLCDMCVILSANQNN-IDDTSLQDKECILASLNIKSMQFDDSIGVLQA  526 (798)
T ss_dssp             HHHHHTTTTTSSSEEBCBSCTTCHHHHHHTTSTTCSEEEEEESSCTT-CCCSSSTTHHHHHHHHHHHHCCCC--------
T ss_pred             CHHHHHHhhCCCceEEecCCCCCHHHHHHhCHHhCCEEEEEcCCCCC-CCChhhhhHHHHHhhhhhhhhccccccccccc
Confidence               788999999999998    9999999999999999999987533 47899999999998866543            


Q ss_pred             ------------------------------hcCCCcEEEeecccccccccccccchhHHHhhhhhhHHhhhcCCcccccc
Q psy8620         551 ------------------------------FFPGIRTITELSQSSNMRFMQFRAQDKYALHLSKMEKKEKERGSHISYMF  600 (695)
Q Consensus       551 ------------------------------~~~~i~iitEl~~~~n~~f~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~  600 (695)
                                                    .+++++|||||.+++|++|+++...+                ...++|+|
T Consensus       527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipiitEL~~~~ni~fl~~~~~~----------------~~~~~~~~  590 (798)
T 3naf_A          527 NSQGFTPPGMDRSSPDNSPVHGMLRQPSITTGVNIPIITELVNDTNVQFLDQDDDD----------------DPDTELYL  590 (798)
T ss_dssp             ------------------------------CTTCCCEEEEESSTTGGGGGSCCTTC----------------CTTCCGGG
T ss_pred             cccccccccccccccccccccchhhccccccCCCCceEEEecCCCccccccccCCC----------------ccCcceee
Confidence                                          25689999999999999999983322                24578999


Q ss_pred             cccccccccccHhhHHHHHHhhhcchhHHHHHHHHhcCCCCC--------CCc----c-------------eeeeee---
Q psy8620         601 RLPFAAGSVFSASMLDTLLYQAFVKDYVITFIRLLLGVDQAP--------GSG----F-------------LTSMKI---  652 (695)
Q Consensus       601 ~~~fa~G~vfs~~~ld~Ll~qs~~~~~~~~~~~~Ll~~~~~~--------~~~----~-------------l~~~~i---  652 (695)
                      ++|||+|+|||++|||+||+|+|||+++++++|+|++++.++        +.|    +             +...++   
T Consensus       591 ~~~fa~G~~fs~s~ldsl~~~~y~n~~~~~il~~lvtGg~~~~~e~~~~~~~~~~~~~~~~~~~~~r~~c~l~~l~L~~~  670 (798)
T 3naf_A          591 TQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVTGGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALLDG  670 (798)
T ss_dssp             SHHHHHTSEEETTHHHHHHHHHHHCTHHHHHHHHHHSCSCHHHHHHHTTTSSSCCCCCCCTTGGGTTCCCEEEEEESTTS
T ss_pred             cccccccceeHHHHHHHHHHHHHhCHHHHHHHHHHHhCCCcHHHHHHhhhccccccCcCccccccccccceecccccccc
Confidence            999999999999999999999999999999999999764332        111    1             112221   


Q ss_pred             CC-CccCCCcHHHHHHHHHhccCceeeEEEeecCCC
Q psy8620         653 TK-DDMWIRTYGRLYQKLCSTTCEIPIGIYRTQDMS  687 (695)
Q Consensus       653 ~~-~~~~~~tf~~lf~~ll~~~~~i~iGlyR~~~~~  687 (695)
                      |. ....++||||||+++|+++|+|||||||..+..
T Consensus       671 p~~~~~~~~tfg~lf~~~l~~~~~l~iGLYR~~~~~  706 (798)
T 3naf_A          671 PFADLGDGGCYGDLFCKALKTYNMLCFGIYRLRDAH  706 (798)
T ss_dssp             STTTTTTTCCHHHHHTHHHHTTCCEECEEEEESTTS
T ss_pred             CcccccccCcHHHHHHHHHHhCCcceeeeeeccccc
Confidence            11 225789999999999999999999999999986

PyMOL of 3naf

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A	Back alignment and structure

>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}	Back alignment and structure

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*	Back alignment and structure

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A	Back alignment and structure

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A	Back alignment and structure

>3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} PDB: 3u6n_A	Back alignment and structure

>3naf_A Calcium-activated potassium channel subunit alpha; ION channel, gating ring, rossman fold, transport, ION trans; 3.10A {Homo sapiens}	Back alignment and structure

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}	Back alignment and structure

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A	Back alignment and structure

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*	Back alignment and structure

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}	Back alignment and structure

>4hpf_A Potassium channel subfamily U member 1; PH-gated, membrane protein, transport Pro; 3.40A {Homo sapiens}	Back alignment and structure

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A	Back alignment and structure

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A	Back alignment and structure

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A	Back alignment and structure

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...	Back alignment and structure

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}	Back alignment and structure

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}	Back alignment and structure

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A	Back alignment and structure

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9	Back alignment and structure

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}	Back alignment and structure

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*	Back alignment and structure

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1	Back alignment and structure

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}	Back alignment and structure

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*	Back alignment and structure

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A	Back alignment and structure

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*	Back alignment and structure

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*	Back alignment and structure

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}	Back alignment and structure

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}	Back alignment and structure

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*	Back alignment and structure

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*	Back alignment and structure

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}	Back alignment and structure

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}	Back alignment and structure

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*	Back alignment and structure

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}	Back alignment and structure

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9	Back alignment and structure

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*	Back alignment and structure

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*	Back alignment and structure

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A	Back alignment and structure

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*	Back alignment and structure

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A	Back alignment and structure

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}	Back alignment and structure

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}	Back alignment and structure

>1vct_A Hypothetical protein PH0236; helix rich, structural genomics, riken structural genomics/P initiative, RSGI, NPPSFA; 1.85A {Pyrococcus horikoshii} SCOP: a.7.12.1 d.286.1.1 PDB: 2bkn_A 2bko_A 2bkp_A	Back alignment and structure

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9	Back alignment and structure

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}	Back alignment and structure

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}	Back alignment and structure

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*	Back alignment and structure

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}	Back alignment and structure

>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		695
d1lnqa2		80	f.14.1.1 (A:19-98) Potassium channel-related prote	2e-06
d1xl4a2		116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	0.003

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80	Back information, alignment and structure


class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 42 HLNLFQATYYVVVTFSTVGYGDFVPDIWPSQLYMVIMICVALIVLPTQFEQLA 94
            +   + Y+  VT +TVGYGD+ P       + V +I + +       E+L 
Sbjct: 25 GESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLL 77

PyMOL of d1lnqa2

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		695
d1id1a_		153	Rck domain from putative potassium channel Kch {Es	99.73
d2fy8a1		129	Potassium channel-related protein MthK {Archaeon M	99.69
d1r3jc_		103	Potassium channel protein {Streptomyces coelicolor	99.57
d1lssa_		132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	99.38
d1p7ba2		116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.36
d1xl4a2		116	Inward rectifier potassium channel kirbac3.1 {Magn	99.33
d2hmva1		134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	99.32
d1lnqa2		80	Potassium channel-related protein MthK {Archaeon M	99.29
d2h8pc1		57	Potassium channel protein {Streptomyces coelicolor	98.12
d2fy8a1		129	Potassium channel-related protein MthK {Archaeon M	97.72
d1id1a_		153	Rck domain from putative potassium channel Kch {Es	97.42
d2fy8a2		92	Potassium channel-related protein MthK, C-terminal	95.44
d1vcta2		94	Hypothetical protein PH0236, C-terminal domain {Py	94.55
d2hmva1		134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.59
d1lssa_		132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	84.85

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.5e-17  Score=154.86  Aligned_cols=145  Identities=17%  Similarity=0.239  Sum_probs=118.6

Q ss_pred             CCceEEEEccCccHHHHHHHHHHHhcCCCCCcceEEEecCCC-cc-HHHHHHhcCCccccceEEEEcCCCChHhHhhccc
Q psy8620         114 SEKHVVVCSTTLHADTIMDFLNEFYAHPLLQNYYVVLLSPME-LD-TTMRMILQVPIWAQRVIYIQGSCLKDGDLARARM  191 (695)
Q Consensus       114 ~~~HvVI~G~~~~~~~l~~~L~e~~~~~~~~~~~VVil~~~e-~~-~~l~~~l~~p~~~~~v~~i~Gd~~~~~dL~ra~i  191 (695)
                      .++||||||||..+..+++.|.+..       .++++++..+ .. +.....     ...++.++.||+++++.|++|++
T Consensus         2 ~knHiII~G~g~~g~~l~~~L~~~~-------~~v~vId~d~~~~~~~~~~~-----~~~~~~vi~Gd~~d~~~L~~a~i   69 (153)
T d1id1a_           2 RKDHFIVCGHSILAINTILQLNQRG-------QNVTVISNLPEDDIKQLEQR-----LGDNADVIPGDSNDSSVLKKAGI   69 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTT-------CCEEEEECCCHHHHHHHHHH-----HCTTCEEEESCTTSHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcC-------CCEEEEeccchhHHHHHHHh-----hcCCcEEEEccCcchHHHHHhcc
Confidence            4689999999999999999998742       3566665433 11 112211     14579999999999999999999


Q ss_pred             ccccEEEEeccCCCCCCccchHHHHHHHHHHhhhCCCccEEEEEeCccchhhc--cCCCeEEehHHHHHHHHHHHhcCCC
Q psy8620         192 NEAEACFVLAARNYSDKTAADEHTILRSWAVKDFAPDVPQYVQIFRPENKLHV--KFAEFIVCEDELKYALLANNCTCPG  269 (695)
Q Consensus       192 ~~A~aviIla~~~~~d~~~~D~~~i~~~laik~~~p~i~Iiv~i~~~~~~~~~--~gad~VI~~~el~~~lLa~s~~~PG  269 (695)
                      ++|+++++++        ++|..|+++++.+|+++|++++++++.++++...+  .|+|.||+|+.+.++.|++.+..|+
T Consensus        70 ~~a~~vi~~~--------~~d~~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~~Gad~vi~p~~~~~~~l~~~l~~~~  141 (153)
T d1id1a_          70 DRCRAILALS--------DNDADNAFVVLSAKDMSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEE  141 (153)
T ss_dssp             TTCSEEEECS--------SCHHHHHHHHHHHHHHTSSSCEEEECSSGGGHHHHHTTCCSEEECHHHHHHHHHHHHHTTCC
T ss_pred             ccCCEEEEcc--------ccHHHHHHHHHHHHHhCCCCceEEEEcCHHHHHHHHHCCCCEEECHHHHHHHHHHHHhCcCC
Confidence            9999999854        57999999999999999999999999999997665  4899999999999999999999999


Q ss_pred             hHH-HHHHHh
Q psy8620         270 AST-LVTLLL  278 (695)
Q Consensus       270 l~~-li~~Ll  278 (695)
                      +.+ .+.++|
T Consensus       142 v~~~~~~~~l  151 (153)
T d1id1a_         142 INNDMLVSML  151 (153)
T ss_dssp             CCHHHHHHTT
T ss_pred             CCHHHHHHHh
Confidence            964 555554

PyMOL of d1id1a_

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}	Back information, alignment and structure

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}	Back information, alignment and structure

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}	Back information, alignment and structure

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2fy8a2 d.286.1.1 (A:245-336) Potassium channel-related protein MthK, C-terminal domain {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}	Back information, alignment and structure

>d1vcta2 d.286.1.1 (A:108-201) Hypothetical protein PH0236, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure