Psyllid ID: psy8690

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
Protein Sequence
MAAVEMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccHHHHHHHHHccEEEccccHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHccccccccccccccccccccccccccEEEEEEEEEEcccccccccccccccccccccccccHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccEcHHcccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEccHccHHHHHcccEEEcccccccHHHHHHHHcccEEEEEEEcccccEEEEEEEEccccccccccEEEccccccccccccccEEEEEEEEEcccccEEEEEEccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
maavemedikpklkdlpkfhndsssdssssdsdddnsdssvstsssvdhkgrsvEVKKARsaekvtarpekptirtydyITKINYLFRDARFFviksnnsenvdiakgqgvwstlPQNEQKLNQAYRESRNVLLIFSVresgkfsgfarlaseadhgvspvkwvlppglsgkvlngvfkidwvsrkelpftstlhlynswnegypgsgvppdpaalfdymrs
Flexible Loop (DISEMBL)
maavemedikpklkdlpkfhndsssdssssdsdddnsdssvstsssvdhkgrsvevkkarsaekvtarpekptirtydyITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Low Complexity Region (SEG)
MAAVEMEDIKPKLKDLPKFHndsssdssssdsdddnsdssvstsssvdHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Disordered region (IsUnstruct)
************************************************************************TIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLP*****LNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP*****************
Disordered Region (DISOPRED)
**********************************************************************************INYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Disordered Region (DISEMBL)
MAAVEMEDIKPKLKDLPKF*************************************************PEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Disordered Region (DISPRO)
************************************************************************TIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAVEMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	222	2.2.26 [Sep-21-2011]
Q96MU7	727	YTH domain-containing pro	yes	N/A	0.576	0.176	0.656	2e-48
Q9QY02	738	YTH domain-containing pro	yes	N/A	0.576	0.173	0.648	2e-47
B2RR83	1445	Probable ATP-dependent RN	no	N/A	0.472	0.072	0.455	9e-22
Q9H6S0	1430	Probable ATP-dependent RN	no	N/A	0.477	0.074	0.451	1e-21
Q5R746	671	YTH domain-containing pro	no	N/A	0.472	0.156	0.455	3e-21
Q0DA50	665	Zinc finger CCCH domain-c	yes	N/A	0.513	0.171	0.370	6e-16
A9LNK9	631	Cleavage and polyadenylat	no	N/A	0.509	0.179	0.391	2e-15
P59326	559	YTH domain family protein	no	N/A	0.698	0.277	0.246	1e-07
Q9BYJ9	559	YTH domain family protein	no	N/A	0.468	0.186	0.274	7e-07
Q4R5D9	579	YTH domain family protein	N/A	N/A	0.509	0.195	0.270	1e-06

>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3

 Score =  192 bits (487), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 104/128 (81%)

Query: 78  DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
           D  +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct: 343 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 402

Query: 138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
           VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL 
Sbjct: 403 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 462

Query: 198 NSWNEGYP 205
           N WNE  P
Sbjct: 463 NPWNEHKP 470

May be part of a signal transduction pathway that influences splice site selection.
Homo sapiens (taxid: 9606)

>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 83/128 (64%), Positives = 103/128 (80%)

Query: 78  DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
           D  +K+  + +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct: 346 DQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 405

Query: 138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
           VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL 
Sbjct: 406 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 465

Query: 198 NSWNEGYP 205
           N WNE  P
Sbjct: 466 NPWNEHKP 473

May be part of a signal transduction pathway that influences splice site selection.

Rattus norvegicus (taxid: 10116)

>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2 PE=2 SV=1

 Score =  103 bits (257), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 7/112 (6%)

Query: 91   RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
            R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363

Query: 151  ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
            +SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 1364 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1408

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2 PE=1 SV=2

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 7/113 (6%)

Query: 90   ARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R
Sbjct: 1288 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSR 1347

Query: 150  LASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
            ++SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 1348 MSSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1393

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 4

EC: .

EC: 1

EC: 3

>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/112 (45%), Positives = 76/112 (67%), Gaps = 7/112 (6%)

Query: 91  RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
           R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct: 530 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 589

Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           +SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 590 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 634

Pongo abelii (taxid: 9601)

>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa subsp. japonica GN=Os06g0677700 PE=2 SV=1

 Score = 84.3 bits (207), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 2/116 (1%)

Query: 90  ARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
           +R+F++KS N EN++I+  QG+W+T   NE KLN+A+    NV+LIFS+  +  F G A+
Sbjct: 260 SRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAK 319

Query: 150 LASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
           + S     +    W    G +    N  F I W+   EL F  T HL N +N+  P
Sbjct: 320 MTSRIGGYIGGGNWKSAHGTAHYGRN--FSIQWLKLCELSFQKTHHLRNPYNDNLP 373

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30 OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/115 (39%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 91  RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
           R+FV+KSNN EN +++  QGVW+T   NE KLN+A+    NV+LIFSV  +  F G A++
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKM 297

Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
            S     +    W    G +    N  F + W+   EL F  T +L N +NE  P
Sbjct: 298 TSRIGGYIGGGNWKHEHGTAQYGRN--FSVKWLKLCELSFHKTRNLRNPYNENLP 350

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation. May interact with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition (By similarity). Binds RNA in a calcium-dependent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 11/166 (6%)

Query: 36  NSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRT-YDYITK-INYLFRDARFF 93
           N +++   S   +    SV   +  SA  V + P    ++  + Y  K  ++  +  R F
Sbjct: 333 NRNAAFGQSGGANSDSNSVGNAQPTSAPSVESHPVLEKLKAAHSYNPKEFDWNLKSGRVF 392

Query: 94  VIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARL 150
           +IKS + +++  +    +W +     ++L+ A+R   +   V L+FSV  SG F G A +
Sbjct: 393 IIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGHFCGVAEM 452

Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
            S  D+G S   W      S     G F + W+  K++P     H+
Sbjct: 453 KSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHI 492

Mus musculus (taxid: 10090)

>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 87  FRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGK 143
            +  R F+IKS + +++  +    +W +     ++L+ A+R   +   V L+FSV  SG 
Sbjct: 386 LKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSGH 445

Query: 144 FSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
           F G A + S  D+G S   W      S     G F + W+  K++P     H+
Sbjct: 446 FCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVQWIFVKDVPNNQLRHI 492

Homo sapiens (taxid: 9606)

>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 9/122 (7%)

Query: 87  FRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGK 143
            +  R F+IKS + +++  +    +W +     ++L+ AYR       V L+FSV  SG 
Sbjct: 407 LKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGH 466

Query: 144 FSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           F G A + S  D+      W      S     G F + W+  K++P +   H+    NE 
Sbjct: 467 FCGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNEN 520

Query: 204 YP 205
            P
Sbjct: 521 KP 522

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
383866424	351	PREDICTED: YTH domain-containing protein	0.788	0.498	0.607	2e-57
340719507	458	PREDICTED: YTH domain-containing protein	0.684	0.331	0.670	3e-57
328784602	457	PREDICTED: YTH domain-containing protein	0.684	0.332	0.670	3e-57
380029289	456	PREDICTED: YTH domain-containing protein	0.680	0.331	0.670	3e-57
350410519	457	PREDICTED: YTH domain-containing protein	0.684	0.332	0.664	4e-57
332025281	451	YTH domain-containing protein 1 [Acromyr	0.675	0.332	0.673	8e-57
307212497	453	YTH domain-containing protein 1 [Harpegn	0.684	0.335	0.670	8e-57
307183182	453	YTH domain-containing protein 1 [Campono	0.644	0.315	0.691	1e-56
357628554	443	hypothetical protein KGM_02742 [Danaus p	0.594	0.297	0.757	2e-56
322785605	457	hypothetical protein SINV_06827 [Solenop	0.675	0.328	0.654	2e-55

>gi|383866424|ref|XP_003708670.1| PREDICTED: YTH domain-containing protein 1-like, partial [Megachile rotundata]

 Score =  228 bits (580), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 133/181 (73%), Gaps = 6/181 (3%)

Query: 23  SSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITK 82
           S S  SS   +  N  +    + S D K  S E K+ARS E       K   ++YDY TK
Sbjct: 53  SVSTKSSRGDNKRNRKNRGKRARSRDSKSSSPETKRARSKE------TKGIAKSYDYATK 106

Query: 83  INYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESG 142
           +NYLFRDARFF+IKSNN+ENV ++K +GVWSTLPQNE  LNQAYRESRNVLL+FSV+ESG
Sbjct: 107 LNYLFRDARFFIIKSNNAENVTLSKAKGVWSTLPQNEANLNQAYRESRNVLLVFSVKESG 166

Query: 143 KFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           KF+GFARL +E+    +P+ WVLPPGLS K L GVFK+DW+ RKELPFT+TLHLYN WN+
Sbjct: 167 KFAGFARLGTESRRDGAPISWVLPPGLSAKALGGVFKVDWICRKELPFTATLHLYNPWND 226

Query: 203 G 203
           G
Sbjct: 227 G 227

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719507|ref|XP_003398194.1| PREDICTED: YTH domain-containing protein 1-like [Bombus terrestris]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 6/158 (3%)

Query: 46  SVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
           S D K  S E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV +
Sbjct: 76  SRDSKSSSPETKRARSKE------SKGVTKSYDYATKLNYLFRDARFFIIKSNNAENVTL 129

Query: 106 AKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
           +K +GVWSTLPQNE  LNQAYRESRNVLLIFSV+ESGKF+GFARL++E+    +P+ WVL
Sbjct: 130 SKAKGVWSTLPQNEANLNQAYRESRNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVL 189

Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           PPGLS K L GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 190 PPGLSAKALGGVFKVDWICRKELPFTATLHLYNPWNDG 227

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328784602|ref|XP_395221.4| PREDICTED: YTH domain-containing protein 1-like [Apis mellifera]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 6/158 (3%)

Query: 46  SVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
           S D K  S E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV +
Sbjct: 76  SRDSKSSSPETKRARSKE------SKGITKSYDYATKLNYLFRDARFFIIKSNNAENVTL 129

Query: 106 AKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
           +K +GVWSTLPQNE  LNQAYRESRNVLLIFSV+ESGKF+GFARL++E+    +P+ WVL
Sbjct: 130 SKAKGVWSTLPQNEANLNQAYRESRNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVL 189

Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           PPGLS K L GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 190 PPGLSAKALGGVFKVDWICRKELPFTATLHLYNPWNDG 227

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029289|ref|XP_003698309.1| PREDICTED: YTH domain-containing protein 1-like [Apis florea]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 126/158 (79%), Gaps = 7/158 (4%)

Query: 46  SVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
           S D K  S E K+ARS EK          ++YDY TK+NYLFRDARFF+IKSNN+ENV +
Sbjct: 76  SRDSKSSSPEAKRARSKEK-------GITKSYDYATKLNYLFRDARFFIIKSNNAENVTL 128

Query: 106 AKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
           +K +GVWSTLPQNE  LNQAYRESRNVLLIFSV+ESGKF+GFARL++E+    +P+ WVL
Sbjct: 129 SKAKGVWSTLPQNEANLNQAYRESRNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVL 188

Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           PPGLS K L GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 189 PPGLSAKALGGVFKVDWICRKELPFTATLHLYNPWNDG 226

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350410519|ref|XP_003489065.1| PREDICTED: YTH domain-containing protein 1-like [Bombus impatiens]

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 105/158 (66%), Positives = 126/158 (79%), Gaps = 6/158 (3%)

Query: 46  SVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
           S D K  S E K+ARS E       K   ++YDY TK+NYLFRDARFF+IKSNN+ENV +
Sbjct: 76  SRDSKSSSPETKRARSKE------SKGVTKSYDYATKLNYLFRDARFFIIKSNNAENVTL 129

Query: 106 AKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
           +K +GVWSTLPQNE  LNQAYRESRNVLL+FSV+ESGKF+GFARL++E+    +P+ WVL
Sbjct: 130 SKAKGVWSTLPQNEANLNQAYRESRNVLLVFSVKESGKFAGFARLSTESRRDGAPISWVL 189

Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           PPGLS K L GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 190 PPGLSAKALGGVFKVDWICRKELPFTATLHLYNPWNDG 227

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332025281|gb|EGI65452.1| YTH domain-containing protein 1 [Acromyrmex echinatior]

 Score =  226 bits (575), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 105/156 (67%), Positives = 123/156 (78%), Gaps = 6/156 (3%)

Query: 48  DHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAK 107
           D K  S E K+ARS +       K T + YDY TK+NYLFRDARFF+IKSNN+ENV ++K
Sbjct: 80  DSKSSSPEPKRARSKD------SKGTTKNYDYTTKLNYLFRDARFFIIKSNNAENVTLSK 133

Query: 108 GQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPP 167
            +GVWSTLPQNE  LNQAYRESRNVLL+FSV+ESGKF+GFARL +E+     PV WVLPP
Sbjct: 134 AKGVWSTLPQNEANLNQAYRESRNVLLVFSVKESGKFAGFARLCTESRRDAGPVSWVLPP 193

Query: 168 GLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           GLS K L GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 194 GLSAKALGGVFKVDWICRKELPFTATLHLYNPWNDG 229

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212497|gb|EFN88228.1| YTH domain-containing protein 1 [Harpegnathos saltator]

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 128/158 (81%), Gaps = 6/158 (3%)

Query: 46  SVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
           S D K  S E K+A+S E       K T ++YDY TK+NYLFRDARFF+IKSNN+ENV +
Sbjct: 78  SRDTKSSSPEPKRAKSKE------SKGTAKSYDYTTKLNYLFRDARFFIIKSNNAENVTL 131

Query: 106 AKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
           +K +GVWSTLPQNE  LNQAY+ESRNVLLIFSV+ESGKF+GFARL++E+    +P+ WVL
Sbjct: 132 SKAKGVWSTLPQNEANLNQAYKESRNVLLIFSVKESGKFAGFARLSTESRRDGAPISWVL 191

Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
           PPGLS KVL GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 192 PPGLSAKVLGGVFKVDWICRKELPFTATLHLYNPWNDG 229

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183182|gb|EFN70091.1| YTH domain-containing protein 1 [Camponotus floridanus]

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 122/149 (81%), Gaps = 6/149 (4%)

Query: 55  EVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWST 114
           E K+ARS E       K T ++YDY TK+NYLFRDARFF+IKSNN+ENV ++K +GVWST
Sbjct: 87  EPKRARSKE------SKGTTKSYDYATKLNYLFRDARFFIIKSNNAENVTLSKAKGVWST 140

Query: 115 LPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVL 174
           LPQNE  LNQAYRESRNVLL+FSV+ESGKF+GFARL++E+     PV WVLPPGLS K L
Sbjct: 141 LPQNEANLNQAYRESRNVLLVFSVKESGKFAGFARLSTESRRDAGPVSWVLPPGLSAKAL 200

Query: 175 NGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
            GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 201 GGVFKVDWICRKELPFTATLHLYNPWNDG 229

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628554|gb|EHJ77849.1| hypothetical protein KGM_02742 [Danaus plexippus]

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 100/132 (75%), Positives = 116/132 (87%)

Query: 74  IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVL 133
           I+TYDY+TK+NYLFRD RFF+IKSNNSEN+ ++K +GVWSTLPQNE  LNQAYRESRNVL
Sbjct: 92  IKTYDYMTKLNYLFRDTRFFLIKSNNSENITLSKAKGVWSTLPQNEANLNQAYRESRNVL 151

Query: 134 LIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTST 193
           LIFSV+ESGKF+GFARLASE+   V  + WVLPPGLS KVL+GVFK+DW+ RKEL F+ST
Sbjct: 152 LIFSVKESGKFAGFARLASESRRDVPSISWVLPPGLSAKVLDGVFKVDWICRKELSFSST 211

Query: 194 LHLYNSWNEGYP 205
           LHLYN WNEG P
Sbjct: 212 LHLYNPWNEGKP 223

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322785605|gb|EFZ12260.1| hypothetical protein SINV_06827 [Solenopsis invicta]

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/162 (65%), Positives = 125/162 (77%), Gaps = 12/162 (7%)

Query: 48  DHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARF------FVIKSNNSE 101
           D K  S E K+ARS E       K T ++YDY TK+NYLFRDARF      F+IKSNN+E
Sbjct: 78  DSKSSSPEPKRARSKE------SKGTTKSYDYTTKLNYLFRDARFDEDNKFFIIKSNNAE 131

Query: 102 NVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPV 161
           NV ++K +GVWSTLPQNE  LNQAYRESRNVLL+FSV+ESGKF+GFARL++E+     PV
Sbjct: 132 NVTLSKAKGVWSTLPQNEANLNQAYRESRNVLLVFSVKESGKFAGFARLSTESRRDAGPV 191

Query: 162 KWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEG 203
            WVLPPGLS K L GVFK+DW+ RKELPFT+TLHLYN WN+G
Sbjct: 192 SWVLPPGLSAKALGGVFKVDWICRKELPFTATLHLYNPWNDG 233

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	222
UNIPROTKB|Q96MU7	727	YTHDC1 "YTH domain-containing	0.576	0.176	0.656	1.1e-45
RGD|621706	738	Ythdc1 "YTH domain containing	0.576	0.173	0.648	1.3e-45
FB|FBgn0027616	721	YT521-B "YT521-B" [Drosophila	0.698	0.214	0.560	4.6e-45
ZFIN|ZDB-GENE-041114-114	679	ythdc1 "YTH domain containing	0.698	0.228	0.572	3.2e-44
UNIPROTKB|F1NS70	1339	YTHDC2 "Uncharacterized protei	0.472	0.078	0.491	1.5e-22
UNIPROTKB|E2QZR7	1376	YTHDC2 "Uncharacterized protei	0.472	0.076	0.464	4.8e-22
UNIPROTKB|F1RLG0	1151	YTHDC2 "Uncharacterized protei	0.472	0.091	0.455	3e-21
UNIPROTKB|F1MNU7	1429	YTHDC2 "Uncharacterized protei	0.472	0.073	0.455	4.1e-21
MGI|MGI:2448561	1445	Ythdc2 "YTH domain containing	0.472	0.072	0.455	4.2e-21
UNIPROTKB|Q9H6S0	1430	YTHDC2 "Probable ATP-dependent	0.472	0.073	0.455	5.2e-21

UNIPROTKB|Q96MU7 YTHDC1 "YTH domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 466 (169.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
 Identities = 84/128 (65%), Positives = 104/128 (81%)

Query:    78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
             D  +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct:   343 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 402

Query:   138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
             VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL 
Sbjct:   403 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 462

Query:   198 NSWNEGYP 205
             N WNE  P
Sbjct:   463 NPWNEHKP 470

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

RGD|621706 Ythdc1 "YTH domain containing 1" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
 Identities = 83/128 (64%), Positives = 103/128 (80%)

Query:    78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
             D  +K+  + +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct:   346 DQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 405

Query:   138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
             VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL 
Sbjct:   406 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 465

Query:   198 NSWNEGYP 205
             N WNE  P
Sbjct:   466 NPWNEHKP 473

GO:0000398 "mRNA splicing, via spliceosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005654 "nucleoplasm" evidence=IDA

GO:0016604 "nuclear body" evidence=IDA

FB|FBgn0027616 YT521-B "YT521-B" [Drosophila melanogaster (taxid:7227)]

 Score = 477 (173.0 bits), Expect = 4.6e-45, P = 4.6e-45
 Identities = 88/157 (56%), Positives = 116/157 (73%)

Query:    51 GRSVEVKKARSAEK--VTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKG 108
             GR     K+ + EK  V       + + YDY+TK+NYLFRD RFF+IKSNNS+NV ++K 
Sbjct:   213 GRGKPSSKSSTPEKDSVGGGTHSHSQKGYDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKN 272

Query:   109 QGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPG 168
             + VW+TLPQN+  LNQA++E+RNVLLIFSV ESGKF+GFAR+A+ +   +  V WVLPP 
Sbjct:   273 KSVWATLPQNDANLNQAFKEARNVLLIFSVNESGKFAGFARMAAPSRRDIPQVAWVLPPS 332

Query:   169 LSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
             +S K L GV ++DW+ RKEL F +TLHL+N+WNEG P
Sbjct:   333 ISPKALGGVIELDWICRKELSFNATLHLHNTWNEGKP 369

GO:0016604 "nuclear body" evidence=ISS

GO:0003723 "RNA binding" evidence=ISS

GO:0016070 "RNA metabolic process" evidence=ISS

ZFIN|ZDB-GENE-041114-114 ythdc1 "YTH domain containing 1" [Danio rerio (taxid:7955)]

 Score = 467 (169.5 bits), Expect = 3.2e-44, P = 3.2e-44
 Identities = 91/159 (57%), Positives = 114/159 (71%)

Query:    51 GRSVEVKKARSAEKVTARPEK--PTIRTY--DYITKINYLFRDARFFVIKSNNSENVDIA 106
             G SV       A     + EK   ++R    D I K+ ++ R+ARFF+IKSNN ENV +A
Sbjct:   256 GESVHSASGSDASGSEKKHEKLSSSVRDVRKDRINKLKHILREARFFLIKSNNHENVSLA 315

Query:   107 KGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLP 166
             K +GVWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP
Sbjct:   316 KAKGVWSTLPVNEKKLNAAFRAARSVVLIFSVRESGKFQGFARLSSESHHGGSPIHWVLP 375

Query:   167 PGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
              G++ K+L GVFKIDW+ R+ELPFT T HL N WNE  P
Sbjct:   376 AGMNAKMLGGVFKIDWICRRELPFTKTAHLANPWNEHKP 414

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NS70 YTHDC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 275 (101.9 bits), Expect = 1.5e-22, P = 1.5e-22
 Identities = 55/112 (49%), Positives = 78/112 (69%)

Query:    91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
             R+F++KS+N +N+DI++ +G+WST P NEQKLN+A+ ES  V LIFSV+ SG F GFAR+
Sbjct:  1196 RYFIMKSSNLQNLDISQQKGIWSTTPSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARM 1255

Query:   151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
             +SE     S   W    G +G  L GVFK++W+ ++ +PF  T HL N WN+
Sbjct:  1256 SSEIGCEQSQC-W----GSTG--LGGVFKVEWIRKESIPFQFTHHLLNPWND 1300

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2QZR7 YTHDC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 263 (97.6 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
 Identities = 52/112 (46%), Positives = 76/112 (67%)

Query:    91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct:  1235 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1294

Query:   151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
             +SE     S   W    G +G  L GVFK++WV ++ LPF    HL N WN+
Sbjct:  1295 SSEIGREKSQ-DW----GSAG--LGGVFKVEWVRKESLPFQFAHHLLNPWND 1339

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1RLG0 YTHDC2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 51/112 (45%), Positives = 76/112 (67%)

Query:    91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct:  1010 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1069

Query:   151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
             +SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct:  1070 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1114

GO:0005524 "ATP binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|F1MNU7 YTHDC2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 262 (97.3 bits), Expect = 4.1e-21, P = 4.1e-21
 Identities = 51/112 (45%), Positives = 76/112 (67%)

Query:    91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct:  1288 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1347

Query:   151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
             +SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct:  1348 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1392

GO:0005524 "ATP binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2448561 Ythdc2 "YTH domain containing 2" [Mus musculus (taxid:10090)]

 Score = 262 (97.3 bits), Expect = 4.2e-21, P = 4.2e-21
 Identities = 51/112 (45%), Positives = 76/112 (67%)

Query:    91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct:  1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363

Query:   151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
             +SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct:  1364 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1408

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004386 "helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

UNIPROTKB|Q9H6S0 YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 5.2e-21, P = 5.2e-21
 Identities = 51/112 (45%), Positives = 76/112 (67%)

Query:    91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R+
Sbjct:  1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRM 1348

Query:   151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
             +SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct:  1349 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1393

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008026 "ATP-dependent helicase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96MU7	YTDC1_HUMAN	No assigned EC number	0.6562	0.5765	0.1760	yes	N/A
Q9QY02	YTDC1_RAT	No assigned EC number	0.6484	0.5765	0.1734	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	222
pfam04146	135	pfam04146, YTH, YT521-B-like domain	1e-41

>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain

 Score =  138 bits (349), Expect = 1e-41
 Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 4/115 (3%)

Query: 91  RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
           RFF+IKS N +NV ++   GVW++   N +KLN+A++E+  V LIFSV +SGKF G+AR+
Sbjct: 1   RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAEPVYLIFSVNKSGKFCGYARM 60

Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
            S  D   +          S +   G FK++W+S K+LPF    HL N  NE  P
Sbjct: 61  TSPIDFDSTANSQ----DSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKP 111

A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68-kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner. The YTH domain has been identified as part of the PUA superfamily. Length = 135

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	222
PF04146	140	YTH: YT521-B-like domain; InterPro: IPR007275 A pr	100.0
KOG1902|consensus	441		100.0
KOG1901|consensus	487		100.0
PRK00809	144	hypothetical protein; Provisional	97.16
PF01878	143	EVE: EVE domain; InterPro: IPR002740 The EVE domai	91.54
PRK02268	141	hypothetical protein; Provisional	80.35

>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []

Probab=100.00  E-value=1.8e-48  Score=317.94  Aligned_cols=127  Identities=42%  Similarity=0.679  Sum_probs=102.6

Q ss_pred             CceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCC
Q psy8690          89 DARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPG  168 (222)
Q Consensus        89 ~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g  168 (222)
                      ++|||||||+|++||++|+++|||+||++|+++|++||+++++||||||||+||+|||||+|+|+++.+.....|...  
T Consensus         1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~w~~~--   78 (140)
T PF04146_consen    1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESRNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPFWQQD--   78 (140)
T ss_dssp             --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-EEEEEEETTTSEEEEEEEEECECCSSS------SS--
T ss_pred             CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCCCEEEEEeecCcceEEEEEEEccCCCCcccCcccccc--
Confidence            589999999999999999999999999999999999999999999999999999999999999999998888899542  


Q ss_pred             CCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCChhhhh
Q psy8690         169 LSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALF  217 (222)
Q Consensus       169 ~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~~~~l  217 (222)
                      ....+|+|.|+|+||++++|||+.++||+||||+||||+.+||++|...
T Consensus        79 ~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~  127 (140)
T PF04146_consen   79 SSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEP  127 (140)
T ss_dssp             -SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-C
T ss_pred             ccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCH
Confidence            2347899999999999999999999999999999999999999977543

It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.

>KOG1902|consensus

Probab=100.00  E-value=6.8e-46  Score=340.43  Aligned_cols=139  Identities=53%  Similarity=0.929  Sum_probs=127.9

Q ss_pred             ccccCCCCceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCc
Q psy8690          82 KINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPV  161 (222)
Q Consensus        82 ~l~~~~~~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~~~~~~~~  161 (222)
                      ++.....++|||||||+|.+||++|+++|||+||+.||++||.||.++..||||||||+||||||||+|+|+|+......
T Consensus        64 ~ss~~~~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG~~~~q~  143 (441)
T KOG1902|consen   64 KLKYVLQDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIGHGGSQI  143 (441)
T ss_pred             cccccCCceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhcCcEEEEEEecccccchhhhhhcchhccCCCCc
Confidence            34456779999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             cccCCCCCCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCCh-------hhhhhhhc
Q psy8690         162 KWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDP-------AALFDYMR  221 (222)
Q Consensus       162 ~W~~~~g~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~-------~~~ld~m~  221 (222)
                      .|..+.|++ ..||++|+|+||++++|||+++.||+|||||||||+-+||+|       ++|+.|++
T Consensus       144 ~W~~~~G~~-a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~  209 (441)
T KOG1902|consen  144 HWVLPAGMS-AMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLP  209 (441)
T ss_pred             cccccCCcc-cccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcC
Confidence            999987764 679999999999999999999999999999999999888885       45666553

>KOG1901|consensus

Probab=100.00  E-value=2.8e-40  Score=314.42  Aligned_cols=131  Identities=29%  Similarity=0.490  Sum_probs=124.0

Q ss_pred             cccCCCCceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCC------cEEEEEEECCCCceeEEEEeecCCCC
Q psy8690          83 INYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESR------NVLLIFSVRESGKFSGFARLASEADH  156 (222)
Q Consensus        83 l~~~~~~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~------~V~LfFSVN~Sg~FqGyArM~S~~~~  156 (222)
                      |.....++|||||||++|+|||+|++|+||++|.++|++|+.||++++      +||||||||.||+|||+|+|+++++.
T Consensus       292 f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdf  371 (487)
T KOG1901|consen  292 FLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDF  371 (487)
T ss_pred             cccccccceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceec
Confidence            334567999999999999999999999999999999999999999875      89999999999999999999999999


Q ss_pred             CCCCccccCCCCCCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCChhhhhhh
Q psy8690         157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDY  219 (222)
Q Consensus       157 ~~~~~~W~~~~g~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~~~~ld~  219 (222)
                      +....+|+.      ++|.|.|.|+|+.++|||+..++||+...||||||+|+||+||+.|+.
T Consensus       372 n~~~~~WqQ------DKW~G~FpVKWhiVKDVPNs~lrHI~LeNNeNKPVTnSRDTQEV~leq  428 (487)
T KOG1901|consen  372 NKDMEYWQQ------DKWSGSFPVKWHIVKDVPNSQLRHIILENNENKPVTNSRDTQEVPLEQ  428 (487)
T ss_pred             ccccchhhh------cccceecceeeEEEeeCCccceeEEEeecCCCCCcccccccceecHHH
Confidence            999999984      689999999999999999999999999999999999999999998864

>PRK00809 hypothetical protein; Provisional

Probab=97.16  E-value=0.0027  Score=52.72  Aligned_cols=99  Identities=18%  Similarity=0.296  Sum_probs=73.1

Q ss_pred             eEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC------CCCceeEEEEeecCCCCCCCCcccc
Q psy8690          91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR------ESGKFSGFARLASEADHGVSPVKWV  164 (222)
Q Consensus        91 RFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN------~Sg~FqGyArM~S~~~~~~~~~~W~  164 (222)
                      +|.|+=+ |++|+..++++|+|......-.-|.+  -.....+|||+-+      .-+.|-|.|++++....+ ++..|.
T Consensus         2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~--Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D-~t~~~p   77 (144)
T PRK00809          2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK--VKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYED-STPIFP   77 (144)
T ss_pred             ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh--CCCCCEEEEEECCccCCCCCCceEEEEEEEecCcccC-CccCCC
Confidence            5777766 89999999999999997765555555  4456778888887      578999999999997554 455664


Q ss_pred             CCCCCCCCccCCcceEEEEEeee--ccCCCc
Q psy8690         165 LPPGLSGKVLNGVFKIDWVSRKE--LPFTST  193 (222)
Q Consensus       165 ~~~g~~~~~~gg~F~VeWL~~~d--LPF~~~  193 (222)
                      ++..+....+--..+|+++...+  ||...+
T Consensus        78 ~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L  108 (144)
T PRK00809         78 AEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL  108 (144)
T ss_pred             ccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence            43333334444677889998878  776655

>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily

Probab=91.54  E-value=0.17  Score=40.65  Aligned_cols=98  Identities=13%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             eEEEEecC----ChhhH---HHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC-CCCceeEEEEeecCCCCCCCCcc
Q psy8690          91 RFFVIKSN----NSENV---DIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR-ESGKFSGFARLASEADHGVSPVK  162 (222)
Q Consensus        91 RFFIIKS~----n~eNI---~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN-~Sg~FqGyArM~S~~~~~~~~~~  162 (222)
                      +|+|+|+.    ..+++   ......|+|-.+..+  .|. ..+.++ -+|||.-+ +.+.|.|.|+.++....+. ...
T Consensus         1 ~YWl~~~~P~~~~~~~~~~~~~~~~~gv~~~~~~~--~l~-~mk~GD-~vifY~s~~~~~~ivai~~V~~~~~~d~-~~~   75 (143)
T PF01878_consen    1 RYWLLKANPENFSIDDLEHWGVTVWDGVRNYQARK--NLK-RMKPGD-KVIFYHSGCKERGIVAIGEVVSEPYPDP-TAF   75 (143)
T ss_dssp             -EEEEEEBTTTSHHHHHHHHSEEECHTEEEHHHHH--HHH-C--TT--EEEEEETSSSS-EEEEEEEEEEEEEE-G-GGT
T ss_pred             CEEEEEeCCcccCHHHhcccceEEEcCEeehhhhh--hhh-cCCCCC-EEEEEEcCCCCCEEEEEEEEeccccCCC-ccc
Confidence            68999996    44444   334556666555554  222 344544 45556555 6799999999999854321 122


Q ss_pred             ccCCCCCCCCc--cCCcceEEEEEeee--ccCCCc
Q psy8690         163 WVLPPGLSGKV--LNGVFKIDWVSRKE--LPFTST  193 (222)
Q Consensus       163 W~~~~g~~~~~--~gg~F~VeWL~~~d--LPF~~~  193 (222)
                      |..+...+.+.  .....+|+++..-+  |+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~L  110 (143)
T PF01878_consen   76 DPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKEL  110 (143)
T ss_dssp             STTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHH
T ss_pred             cccccCcCCccCCCeeEEEEEEEEecCCCcCHHHH
Confidence            22221212222  45567888887644  444544

The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.

>PRK02268 hypothetical protein; Provisional

Probab=80.35  E-value=9.4  Score=31.98  Aligned_cols=97  Identities=10%  Similarity=0.186  Sum_probs=63.5

Q ss_pred             eEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC-------CCCceeEEEEeecCCCCCCCCccc
Q psy8690          91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR-------ESGKFSGFARLASEADHGVSPVKW  163 (222)
Q Consensus        91 RFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN-------~Sg~FqGyArM~S~~~~~~~~~~W  163 (222)
                      +|.|.=. +.+|+.+.++.|+|-.-.....-|.+-  ....-+|+||=.       .=++|-|++++++.--..      
T Consensus         3 ~yWI~v~-s~~hv~~g~~~gf~qv~hgK~apl~Rm--kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq------   73 (141)
T PRK02268          3 RYWIGVV-SAEHVRRGVEGGFMQVCHGKAAPLRRM--KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ------   73 (141)
T ss_pred             ceEEEEc-cHHHHHHHHhCCEEEeCCCccchhhcC--CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe------
Confidence            5665544 799999999999998866655556542  234566777732       347899999998862111      


Q ss_pred             cCCCCCCCCccCCcceEEEEEeeeccCC----CccccccC
Q psy8690         164 VLPPGLSGKVLNGVFKIDWVSRKELPFT----STLHLYNS  199 (222)
Q Consensus       164 ~~~~g~~~~~~gg~F~VeWL~~~dLPF~----~~~HL~Np  199 (222)
                       ..  +....+--..+|+|+...++|++    .+..++|+
T Consensus        74 -~~--m~~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k  110 (141)
T PRK02268         74 -VE--MAPGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDR  110 (141)
T ss_pred             -cc--cCCCceeEEEEeeEeecCccchHHhhcccceeeCc
Confidence             11  11122234567899999999976    44566664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	222
2yud_A	180	Solution Structure Of The Yth Domain In Yth Domain-		3e-48
2yu6_A	141	Solution Structure Of The Yth Domain In Yth Domain-		2e-21

>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 1 (Putative Splicing Factor Yt521) Length = 180

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 84/128 (65%), Positives = 104/128 (81%)
Query: 78  DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
           D  +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct: 14  DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 73
Query: 138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
           VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL 
Sbjct: 74  VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 133
Query: 198 NSWNEGYP 205
           N WNE  P
Sbjct: 134 NPWNEHKP 141

>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain- Containing Protein 2 Length = 141

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 7/113 (6%)
Query: 90  ARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
            R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+R
Sbjct: 8   VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSR 67
Query: 150 LASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
           ++SE     S   W    G +G  L GVFK++W+ ++ LPF    HL N WN+
Sbjct: 68  MSSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	222
2yud_A	180	YTH domain-containing protein 1; structure genomic	2e-43
2yu6_A	141	YTH domain-containing protein 2; structural genomi	6e-38
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 180

 Score =  143 bits (362), Expect = 2e-43
 Identities = 84/137 (61%), Positives = 104/137 (75%)

Query: 69  PEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRE 128
                    D  +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R 
Sbjct: 5   SSGVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRS 64

Query: 129 SRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKEL 188
           +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+EL
Sbjct: 65  ARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRREL 124

Query: 189 PFTSTLHLYNSWNEGYP 205
           PFT + HL N WNE  P
Sbjct: 125 PFTKSAHLTNPWNEHKP 141

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 141

 Score =  127 bits (321), Expect = 6e-38
 Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 7/117 (5%)

Query: 89  DARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFA 148
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+
Sbjct: 7   GVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFS 66

Query: 149 RLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
           R++SE     S        G       GVFK++W+ ++ LPF    HL N WN+   
Sbjct: 67  RMSSEIGREKSQDWGSAGLG-------GVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 71/215 (33%)

Query: 5   EMEDIKPKLKD-LPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDH-------------- 49
           E  + + + KD L  F +    +    D  D     S+ +   +DH              
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 50  ------KGRSVEVKKARS----------AEKVTARPEKPTIRTYDYITKINYLFRDARFF 93
                 K   + V+K                +     +P++ T  YI + + L+ D + F
Sbjct: 68  FWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 94  VIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNV--LLIFSVRESGKFSGFARLA 151
             K N            V     Q   KL QA  E R    +LI  V  SGK      +A
Sbjct: 127 A-KYN------------VSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VA 167

Query: 152 SEA--DHGVSPVKWVLPPGLSGKVLNGVFKIDWVS 184
            +    +    V+  +           +F   W++
Sbjct: 168 LDVCLSY---KVQCKMD--------FKIF---WLN 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	222
2yud_A	180	YTH domain-containing protein 1; structure genomic	100.0
2yu6_A	141	YTH domain-containing protein 2; structural genomi	100.0
2hd9_A	145	UPF0310 protein PH1033; pyrococcus horikoshii OT3,	96.88
2p5d_A	147	UPF0310 protein mjecl36; NPPSFA, national project	96.46

>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=5.6e-52  Score=351.72  Aligned_cols=141  Identities=60%  Similarity=1.022  Sum_probs=134.1

Q ss_pred             ccccccccCCCCceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCC
Q psy8690          78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHG  157 (222)
Q Consensus        78 ~~~~~l~~~~~~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~~~~  157 (222)
                      |+..+++++.+++|||||||++++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|+++.+
T Consensus        14 ~~~~~~~~~~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~Af~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~   93 (180)
T 2yud_A           14 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHG   93 (180)
T ss_dssp             CSSHHHHHHTTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHHHHHSSCEEEEEEETTTSEEEEEEEEEEEEECS
T ss_pred             hhccccccccCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHHHhhCCeEEEEEEeCCCCcEEEEEEEccCCCCC
Confidence            67778888889999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCCccccCCCCCCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCChhhhhh
Q psy8690         158 VSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFD  218 (222)
Q Consensus       158 ~~~~~W~~~~g~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~~~~ld  218 (222)
                      .+...|+.+.|+..+.|+|.|+|+||++++|||..++||+|||||||||+++||+||..++
T Consensus        94 ~~~~~W~~~~~~~~~~~~g~F~V~Wi~~~dvPf~~~~hl~n~~NenkpV~~sRDgqEI~~~  154 (180)
T 2yud_A           94 GSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELE  154 (180)
T ss_dssp             SCCCCCCCCSSCCGGGGCSEEEEEEEECSCEEHHHHTTCCBTTTTSBCTTSCCTTEEECHH
T ss_pred             CCCccccccCccchhhcCCceEEEEEEeecCCchhhhhccccccCCCeeeeCCCCEEcCHH
Confidence            8888999887777789999999999999999999999999999999999999999887654

>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=3.2e-50  Score=329.16  Aligned_cols=126  Identities=38%  Similarity=0.689  Sum_probs=118.8

Q ss_pred             CCCCceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccC
Q psy8690          86 LFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVL  165 (222)
Q Consensus        86 ~~~~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~  165 (222)
                      ...++|||||||++++||++|++||||+||++|+++|++||+++++||||||||+||+|||||+|+|+++. .+...|+ 
T Consensus         4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~~~~~L~~Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~~~~W~-   81 (141)
T 2yu6_A            4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGR-EKSQDWG-   81 (141)
T ss_dssp             CCCCCEEEEEEESSSHHHHHHHHTCEEECCTTSHHHHHHHHHHSSCEEEEEEESSSSEECEEEEECSCSSS-CCCCCCS-
T ss_pred             CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCccHHHHHHHHhcCCcEEEEEEECCCCeEEEEEEEcccCCC-CCCcccc-
Confidence            35789999999999999999999999999999999999999999999999999999999999999999998 5677896 


Q ss_pred             CCCCCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCChhhhhh
Q psy8690         166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFD  218 (222)
Q Consensus       166 ~~g~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~~~~ld  218 (222)
                           +.+|+|.|+|+||++++|||..++||+|||||||||+.+||+||..++
T Consensus        82 -----~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk~V~~~RDgqEi~~~  129 (141)
T 2yu6_A           82 -----SAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNKKVQISRDGQELEPQ  129 (141)
T ss_dssp             -----CSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTEETTCCCTTEEECTT
T ss_pred             -----ccccCCcEEEEEEEeecCChHHhhhcccccCCCCeEEeCCCCEEcCHH
Confidence                 368999999999999999999999999999999999999999887644

>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A

Probab=96.88  E-value=0.0038  Score=50.40  Aligned_cols=99  Identities=19%  Similarity=0.289  Sum_probs=67.4

Q ss_pred             eEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCC--------CceeEEEEeecCCCCCCCCcc
Q psy8690          91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRES--------GKFSGFARLASEADHGVSPVK  162 (222)
Q Consensus        91 RFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~S--------g~FqGyArM~S~~~~~~~~~~  162 (222)
                      +|.|+|| +.+++...++.|+|-. .+..+..-++-+. +..+|||+-|..        ..|-|+|++++.+-++ ++..
T Consensus         2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~arn~lr~mk~-GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D-~t~~   77 (145)
T 2hd9_A            2 TYWICIT-NRENWEVIKRHNVWGV-PKKHKNTLSRVKP-GDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD-FSRI   77 (145)
T ss_dssp             CEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCCT-TCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC-CCCC
T ss_pred             ceEEEeC-CHHHHHHHHHcCcccc-CHHHHHHHHhCCC-CCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeC-CCcc
Confidence            5999999 8999999999999977 5544444443333 466777876654        7999999999987554 3444


Q ss_pred             ccCCCCCCCCccCCcceEEEEEeeeccCCCcc
Q psy8690         163 WVLPPGLSGKVLNGVFKIDWVSRKELPFTSTL  194 (222)
Q Consensus       163 W~~~~g~~~~~~gg~F~VeWL~~~dLPF~~~~  194 (222)
                      |.++... ....--...|+++....+|+..+.
T Consensus        78 ~~~~~~~-~~~~p~rv~v~~v~~~~i~~~~l~  108 (145)
T 2hd9_A           78 FKPHRGG-KETYPYRVKIKPIKIGEINFKPLI  108 (145)
T ss_dssp             SCCTTSS-CCCCCEEEEEEEEEEEEEESGGGG
T ss_pred             CCCcccc-cCCeeEEEeCEEEeeccCcHHHHH
Confidence            4332221 112223456799999999987554

>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0028  Score=51.24  Aligned_cols=101  Identities=13%  Similarity=0.253  Sum_probs=68.1

Q ss_pred             ceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC--C----CCceeEEEEeecCCCCCCCCccc
Q psy8690          90 ARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR--E----SGKFSGFARLASEADHGVSPVKW  163 (222)
Q Consensus        90 aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN--~----Sg~FqGyArM~S~~~~~~~~~~W  163 (222)
                      -+|.|+|+ +.+++...++.|+|-. .+..+..-++-+.+ ..+|||...  .    -..|-|+|+++++..++ ++..|
T Consensus         4 m~YWL~~s-e~~~~~~~~~~g~wGV-n~~arn~lr~Mk~G-D~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D-~t~~d   79 (147)
T 2p5d_A            4 MAYWLCIT-NEDNWKVIKEKKIWGV-AERYKNTINKVKVG-DKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKD-SSKIF   79 (147)
T ss_dssp             CCEEEEEE-CHHHHHHHHHHCEEEE-CGGGHHHHTTCCTT-CEEEEEECCBCSTTCBCCEEEEEEEECSCCEEC-CCCCS
T ss_pred             ccceeeec-CHHHHHHHHHcCeeec-CHHHHHHHHhCCCC-CEEEEEEecccCCCCCCCEEEEEEEEecccccC-CcccC
Confidence            47999999 6889999999999977 54444444444444 455566443  3    45899999999986554 34445


Q ss_pred             cCCCCCCCCccCCcceEEEEEe--eeccCCCcc
Q psy8690         164 VLPPGLSGKVLNGVFKIDWVSR--KELPFTSTL  194 (222)
Q Consensus       164 ~~~~g~~~~~~gg~F~VeWL~~--~dLPF~~~~  194 (222)
                      ..++.......--..+|+++..  ..||+..++
T Consensus        80 p~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk  112 (147)
T 2p5d_A           80 KPTPRNPNEKFPYRVKLKEIKVFEPPINFKELI  112 (147)
T ss_dssp             CCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHG
T ss_pred             cCccCcCCCCCceEEEEEEEeecCCccCHHHHH
Confidence            4332222223345788899988  888887666

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	222
d2hd9a1	145	Hypothetical protein PH1033 {Pyrococcus horikoshii	96.98

>d2hd9a1 b.122.1.8 (A:1-145) Hypothetical protein PH1033 {Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Atu2648/PH1033-like
domain: Hypothetical protein PH1033
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.98  E-value=0.0019  Score=50.26  Aligned_cols=104  Identities=18%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             EEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCC--------CceeEEEEeecCCCCCCCCccc
Q psy8690          92 FFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRES--------GKFSGFARLASEADHGVSPVKW  163 (222)
Q Consensus        92 FFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~S--------g~FqGyArM~S~~~~~~~~~~W  163 (222)
                      |+|+=+ +.||+...++.|+|.......+.|++  -.-..-+|||+....        ++|-|.++.++....+ .++.|
T Consensus         3 YWi~v~-s~e~~~~~~~~g~~~~~~~k~~~~~r--ikpGD~li~Y~~~~~~~~~~~~~q~f~ai~~V~~~~~~d-~t~i~   78 (145)
T d2hd9a1           3 YWICIT-NRENWEVIKRHNVWGVPKKHKNTLSR--VKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVD-FSRIF   78 (145)
T ss_dssp             EEEEEE-CHHHHHHHHHHCEEEECGGGHHHHTT--CCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCEEC-CCCCS
T ss_pred             eEEEeC-CHHHHHHHHhCCEEeccCCchhhHhh--CCCCCEEEEEeCccccCCCcccccEEEEEEEEeccceec-ccccc
Confidence            666655 68999999999999997776666654  233567777876533        4799999999987654 35677


Q ss_pred             cCCCCCCCCccCCcceEEEEEeeeccCCC----ccccccCC
Q psy8690         164 VLPPGLSGKVLNGVFKIDWVSRKELPFTS----TLHLYNSW  200 (222)
Q Consensus       164 ~~~~g~~~~~~gg~F~VeWL~~~dLPF~~----~~HL~Np~  200 (222)
                      ... .+....+--.++|+|+...++|+..    +..++|+-
T Consensus        79 ~~~-~~~~~~~P~R~~v~~~~~~ev~i~~l~~~L~fi~~k~  118 (145)
T d2hd9a1          79 KPH-RGGKETYPYRVKIKPIKIGEINFKPLINDLKFIKNKK  118 (145)
T ss_dssp             CCT-TSSCCCCCEEEEEEEEEEEEEESGGGGGGCTTCCCST
T ss_pred             ccc-ccCCceEEEEEEeEEeecccccHHHHHhHHHhhcCch
Confidence            543 2222334445888999999999764    55566653