Psyllid ID: psy8798

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MAETEDDQWLYGDQAGQNTGDPNTTEPPQPDPKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccEEEEEcHHHHcccccccccccHHHHHHccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
maeteddqwlygdqagqntgdpntteppqpdpkeqssfselpafsdiaqnpdpqgkftVEEFEQIgtinstaphefnldqledkpwrkpgaditdyfnygfteETWRAHHMSSI
Flexible Loop (DISEMBL)
maeteddqwlygdqagqntgdpntTEPPQPDPKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTinstaphefnldqledkpwrkpGADITDYFNYGFTEETWRAHHMSSI
Low Complexity Region (SEG)
MAETEDDQWLYGDQAGQNTGDPNTTEPPQPDPKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI
Disordered region (IsUnstruct)
***************************************************************QIGTI*******FNLDQL*DKPWRKPGADITDYFNYGFTEETWR*******
Disordered Region (DISOPRED)
******D*********************************************************IGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI
Disordered Region (DISEMBL)
********WLYGDQAGQN********************SELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETW********
Disordered Region (DISPRO)
********************************************************FTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAETEDDQWLYGDQAGQNTGDPNTTEPPQPDPKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q5U317	536	Pre-mRNA 3'-end-processin	yes	N/A	0.385	0.082	0.636	6e-12
Q5RAA7	588	Pre-mRNA 3'-end-processin	yes	N/A	0.385	0.074	0.636	6e-12
Q9D824	581	Pre-mRNA 3'-end-processin	no	N/A	0.385	0.075	0.636	6e-12
Q6C784	221	Pre-mRNA polyadenylation	yes	N/A	0.605	0.312	0.461	6e-12
Q6UN15	594	Pre-mRNA 3'-end-processin	no	N/A	0.385	0.074	0.636	7e-12
Q5XJD3	570	Pre-mRNA 3'-end-processin	yes	N/A	0.473	0.094	0.5	7e-11
Q09801	344	Pre-mRNA polyadenylation	yes	N/A	0.429	0.142	0.530	2e-09
Q6BGR9	328	Pre-mRNA polyadenylation	yes	N/A	0.307	0.106	0.657	2e-08
Q4IF44	325	Pre-mRNA polyadenylation	yes	N/A	0.307	0.107	0.628	7e-08
Q751K8	323	Pre-mRNA polyadenylation	yes	N/A	0.228	0.080	0.769	7e-08

>sp|Q5U317|FIP1_RAT Pre-mRNA 3'-end-processing factor FIP1 OS=Rattus norvegicus GN=Fip1l1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 66  GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.
Rattus norvegicus (taxid: 10116)

>sp|Q5RAA7|FIP1_PONAB Pre-mRNA 3'-end-processing factor FIP1 OS=Pongo abelii GN=FIP1L1 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 66  GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 130 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 173

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Pongo abelii (taxid: 9601)

>sp|Q9D824|FIP1_MOUSE Pre-mRNA 3'-end-processing factor FIP1 OS=Mus musculus GN=Fip1l1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 66  GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Mus musculus (taxid: 10090)

>sp|Q6C784|FIP1_YARLI Pre-mRNA polyadenylation factor FIP1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=FIP1 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 9/78 (11%)

Query: 32  PKEQSSFSELPAFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGA 91
           PKE+S+  E          P P  K    + E++G ++     E NL+  EDKPWR PGA
Sbjct: 95  PKEESASEE---------RPQPAAKMPGIDIEKVGMLDGKPITEHNLEDFEDKPWRMPGA 145

Query: 92  DITDYFNYGFTEETWRAH 109
           DITDYFNYGF E TW A+
Sbjct: 146 DITDYFNYGFDEFTWMAY 163

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|Q6UN15|FIP1_HUMAN Pre-mRNA 3'-end-processing factor FIP1 OS=Homo sapiens GN=FIP1L1 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query: 66  GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 145 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 188

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that plays a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. FIP1L1 contributes to poly(A) site recognition and stimulates poly(A) addition. Binds to U-rich RNA sequence elements surrounding the poly(A) site. May act to tether poly(A) polymerase to the CPSF complex.

Homo sapiens (taxid: 9606)

>sp|Q5XJD3|FIP1_DANRE Pre-mRNA 3'-end-processing factor FIP1 OS=Danio rerio GN=fip1l1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 56  KFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           K    + E  G+IN     E +++  E+KPWRKPGAD++DYFNYGF E+TW+A+
Sbjct: 144 KVKGVDLEAPGSINGVPVLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWKAY 197

Involved in mRNA processing.

Danio rerio (taxid: 7955)

>sp|Q09801|FIP1X_SCHPO Pre-mRNA polyadenylation factor fip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC22G7.10 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 35/49 (71%)

Query: 61  EFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           + + + TI+     E +L+  +DKPWRKPGADI+DYFNYGF E TW A+
Sbjct: 106 DIDAVPTIDGKNIFEIDLESFDDKPWRKPGADISDYFNYGFDEFTWAAY 154

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q6BGR9|FIP1_DEBHA Pre-mRNA polyadenylation factor FIP1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=FIP1 PE=3 SV=2

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 75  EFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           + +L++L+DKPWR PGADI+DYFNYGF E TW A+
Sbjct: 149 QVDLEKLKDKPWRFPGADISDYFNYGFDEFTWTAY 183

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q4IF44|FIP1_GIBZE Pre-mRNA polyadenylation factor FIP1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=FIP1 PE=3 SV=2

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 27/35 (77%)

Query: 75  EFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           + N+D+  DKPWRKPG DI+DYFNYGF E TW  +
Sbjct: 144 QVNIDEENDKPWRKPGTDISDYFNYGFDEFTWALY 178

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

>sp|Q751K8|FIP1_ASHGO Pre-mRNA polyadenylation factor FIP1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=FIP1 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 20/26 (76%), Positives = 26/26 (100%)

Query: 81  LEDKPWRKPGADITDYFNYGFTEETW 106
           L++KPWR+PGA+++DYFNYGFTEETW
Sbjct: 179 LKEKPWRQPGANLSDYFNYGFTEETW 204

Pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
307210863	417	Pre-mRNA 3'-end-processing factor FIP1 [	0.482	0.131	0.8	2e-20
307166388	1622	Pre-mRNA 3'-end-processing factor FIP1 [	0.482	0.033	0.763	3e-20
383848143	517	PREDICTED: uncharacterized protein LOC10	0.482	0.106	0.781	6e-20
340719713	517	PREDICTED: hypothetical protein LOC10064	0.482	0.106	0.781	6e-20
380029788	517	PREDICTED: uncharacterized protein LOC10	0.482	0.106	0.781	6e-20
350400848	517	PREDICTED: hypothetical protein LOC10074	0.482	0.106	0.781	6e-20
328786747	517	PREDICTED: hypothetical protein LOC41021	0.482	0.106	0.781	7e-20
322791511	519	hypothetical protein SINV_03887 [Solenop	0.482	0.105	0.763	8e-20
157117959	551	hypothetical protein AaeL_AAEL008100 [Ae	0.5	0.103	0.736	9e-20
156546411	510	PREDICTED: hypothetical protein LOC10012	0.605	0.135	0.671	1e-19

>gi|307210863|gb|EFN87216.1| Pre-mRNA 3'-end-processing factor FIP1 [Harpegnathos saltator]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF++EEFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 89  GKFSIEEFETIGIINGIPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 143

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166388|gb|EFN60525.1| Pre-mRNA 3'-end-processing factor FIP1 [Camponotus floridanus]

 Score =  102 bits (254), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 48/55 (87%)

Query: 55   GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
            GKF+++EFE IG IN    HE+NLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 1257 GKFSIDEFETIGVINGIPAHEYNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 1311

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383848143|ref|XP_003699711.1| PREDICTED: uncharacterized protein LOC100878766 [Megachile rotundata]

 Score =  101 bits (252), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF+++EFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 151 GKFSIDEFETIGVINGMPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 205

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719713|ref|XP_003398292.1| PREDICTED: hypothetical protein LOC100648565 [Bombus terrestris]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF+++EFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 151 GKFSIDEFETIGVINGMPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 205

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029788|ref|XP_003698547.1| PREDICTED: uncharacterized protein LOC100864573 [Apis florea]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF+++EFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 151 GKFSIDEFETIGVINGMPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 205

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400848|ref|XP_003485983.1| PREDICTED: hypothetical protein LOC100741209 [Bombus impatiens]

 Score =  101 bits (251), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF+++EFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 151 GKFSIDEFETIGVINGMPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 205

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328786747|ref|XP_393702.4| PREDICTED: hypothetical protein LOC410219 [Apis mellifera]

 Score =  101 bits (251), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 43/55 (78%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF+++EFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF EETWRA+
Sbjct: 151 GKFSIDEFETIGVINGMPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEETWRAY 205

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322791511|gb|EFZ15902.1| hypothetical protein SINV_03887 [Solenopsis invicta]

 Score =  100 bits (250), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/55 (76%), Positives = 48/55 (87%)

Query: 55  GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           GKF+++EFE IG IN    HEFNLDQLEDKPWR+PGADITDYFNYGF E+TWRA+
Sbjct: 153 GKFSIDEFETIGVINGIPAHEFNLDQLEDKPWRQPGADITDYFNYGFNEDTWRAY 207

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117959|ref|XP_001653120.1| hypothetical protein AaeL_AAEL008100 [Aedes aegypti] gi|108875915|gb|EAT40140.1| AAEL008100-PA [Aedes aegypti] gi|122937768|gb|ABM68607.1| AAEL008100-PA [Aedes aegypti]

 Score =  100 bits (250), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 49/57 (85%)

Query: 53  PQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
           P GKF++EEFE +GTIN    HEF++D LE+KPWRKPGADITDYFNYGF EETWRA+
Sbjct: 179 PAGKFSIEEFESVGTINGVPAHEFSIDSLEEKPWRKPGADITDYFNYGFNEETWRAY 235

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546411|ref|XP_001607096.1| PREDICTED: hypothetical protein LOC100123452 [Nasonia vitripennis]

 Score =  100 bits (250), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/70 (67%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 41  LPAFSDIAQNPDPQ-GKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNY 99
           L A S   +   PQ GKF+++EFE IG IN    HE+NLDQLEDKPWR+PGADITDYFNY
Sbjct: 147 LTAASGAQEKLKPQTGKFSIDEFETIGVINGIPAHEYNLDQLEDKPWRQPGADITDYFNY 206

Query: 100 GFTEETWRAH 109
           GF EETWRA+
Sbjct: 207 GFNEETWRAY 216

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0037255	701	Fip1 [Drosophila melanogaster	0.587	0.095	0.656	2.1e-22
UNIPROTKB|Q6UN15	594	FIP1L1 "Pre-mRNA 3'-end-proces	0.385	0.074	0.636	2.7e-14
ZFIN|ZDB-GENE-041010-138	570	fip1l1b "FIP1 like 1b (S. cere	0.429	0.085	0.530	8.4e-14
UNIPROTKB|E1BKM0	597	E1BKM0 "Uncharacterized protei	0.385	0.073	0.636	9.2e-14
RGD|1309336	536	Fip1l1 "FIP1 like 1 (S. cerevi	0.385	0.082	0.636	1e-13
UNIPROTKB|Q5U317	536	Fip1l1 "Pre-mRNA 3'-end-proces	0.385	0.082	0.636	1e-13
MGI|MGI:1914149	581	Fip1l1 "FIP1 like 1 (S. cerevi	0.385	0.075	0.636	1.4e-13
UNIPROTKB|E1BWP4	580	Gga.5511 "Uncharacterized prot	0.385	0.075	0.636	1.4e-13
WB|WBGene00017988	513	fipp-1 [Caenorhabditis elegans	0.464	0.103	0.571	8.2e-13
DICTYBASE|DDB_G0288797	560	fip1l1 "cleavage and polyadeny	0.359	0.073	0.609	2.6e-11

FB|FBgn0037255 Fip1 [Drosophila melanogaster (taxid:7227)]

 Score = 248 (92.4 bits), Expect = 2.1e-22, Sum P(2) = 2.1e-22
 Identities = 44/67 (65%), Positives = 52/67 (77%)

Query:    43 AFSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFT 102
             A  D A+     GKF++E+FE  GTIN  A HEF++D LE+KPWRKPGADITDYFNYGF 
Sbjct:   187 AAGDKAKPAGQAGKFSIEDFEGAGTINGVAVHEFSIDSLEEKPWRKPGADITDYFNYGFN 246

Query:   103 EETWRAH 109
             EETWRA+
Sbjct:   247 EETWRAY 253

GO:0005515 "protein binding" evidence=IPI

GO:0006398 "histone mRNA 3'-end processing" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|Q6UN15 FIP1L1 "Pre-mRNA 3'-end-processing factor FIP1" [Homo sapiens (taxid:9606)]

 Score = 170 (64.9 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query:    66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   145 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 188

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

ZFIN|ZDB-GENE-041010-138 fip1l1b "FIP1 like 1b (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 8.4e-14, Sum P(2) = 8.4e-14
 Identities = 26/49 (53%), Positives = 37/49 (75%)

Query:    61 EFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             + E  G+IN     E +++  E+KPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   149 DLEAPGSINGVPVLEADMESFEEKPWRKPGADLSDYFNYGFNEDTWKAY 197

GO:0003674 "molecular_function" evidence=ND

GO:0006397 "mRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|E1BKM0 E1BKM0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 9.2e-14, Sum P(2) = 9.2e-14
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query:    66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   147 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 190

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

RGD|1309336 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query:    66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA;ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q5U317 Fip1l1 "Pre-mRNA 3'-end-processing factor FIP1" [Rattus norvegicus (taxid:10116)]

 Score = 170 (64.9 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query:    66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

MGI|MGI:1914149 Fip1l1 "FIP1 like 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 28/44 (63%), Positives = 35/44 (79%)

Query:    66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             G+IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   144 GSINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

GO:0003723 "RNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IDA

GO:0006378 "mRNA polyadenylation" evidence=IC

GO:0006397 "mRNA processing" evidence=IEA

UNIPROTKB|E1BWP4 Gga.5511 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
 Identities = 28/44 (63%), Positives = 34/44 (77%)

Query:    66 GTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             G IN     E +LD  EDKPWRKPGAD++DYFNYGF E+TW+A+
Sbjct:   144 GNINGVPLLEVDLDSFEDKPWRKPGADLSDYFNYGFNEDTWKAY 187

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

WB|WBGene00017988 fipp-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 178 (67.7 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 32/56 (57%), Positives = 40/56 (71%)

Query:    54 QGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             QGK    + +   TIN    ++ +L Q+ED+PWRKPGADITDYFNYGFTEETW  +
Sbjct:   116 QGKL---DLDTTATINDKPIYDLDLAQMEDRPWRKPGADITDYFNYGFTEETWNLY 168

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

DICTYBASE|DDB_G0288797 fip1l1 "cleavage and polyadenylation specificity factor FIP1" [Dictyostelium discoideum (taxid:44689)]

 Score = 155 (59.6 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
 Identities = 25/41 (60%), Positives = 32/41 (78%)

Query:    69 NSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAH 109
             N     EF+++  E+KPW KPGADI+DYFNY FTEETW+A+
Sbjct:   146 NQKTIFEFDIESFEEKPWLKPGADISDYFNYNFTEETWKAY 186

GO:0003723 "RNA binding" evidence=ISS

GO:0006379 "mRNA cleavage" evidence=ISS

GO:0006378 "mRNA polyadenylation" evidence=ISS

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q09801	FIP1X_SCHPO	No assigned EC number	0.5306	0.4298	0.1424	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
pfam05182	45	pfam05182, Fip1, Fip1 motif	4e-18
COG5213	266	COG5213, FIP1, Polyadenylation factor I complex, s	3e-11

>gnl|CDD|191218 pfam05182, Fip1, Fip1 motif

 Score = 71.1 bits (175), Expect = 4e-18
 Identities = 23/35 (65%), Positives = 30/35 (85%)

Query: 74  HEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRA 108
            +++L+  E+KPWRKPGADI+DYFNYGF EETW+ 
Sbjct: 1   FDYDLESFEEKPWRKPGADISDYFNYGFNEETWKL 35

This short motif is about 40 amino acids in length. In the Fip1 protein that is a component of a yeast pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase. This region of Fip1 is needed for the interaction with the Th1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor. Length = 45

>gnl|CDD|227538 COG5213, FIP1, Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]

 Score = 57.7 bits (139), Expect = 3e-11
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 49  QNPDPQGKFTVE-----EFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTE 103
           +  +  G+   E     + ++  T +     + +++  +DKPWRKPGADI+DYFNYGF E
Sbjct: 89  KATESDGELIKEKTPEIDEDKEETEDGQNILDIDIESFKDKPWRKPGADISDYFNYGFNE 148

Query: 104 ETWRAH 109
            TW+ +
Sbjct: 149 FTWKEY 154

Length = 266

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
KOG1049|consensus	538		99.96
PF05182	45	Fip1: Fip1 motif; InterPro: IPR007854 This short m	99.96
COG5213	266	FIP1 Polyadenylation factor I complex, subunit FIP	99.93

>KOG1049|consensus

Probab=99.96  E-value=1.6e-30  Score=226.18  Aligned_cols=70  Identities=49%  Similarity=0.919  Sum_probs=65.0

Q ss_pred             cccccCCCCCCCCcchhhhhcccccCCccceeeCcccCCCCCCCCCCCCCCcccccCCCHHHHHHHHhhc
Q psy8798          44 FSDIAQNPDPQGKFTVEEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSS  113 (114)
Q Consensus        44 ~~d~a~~~~~~Gkf~~~d~~~~g~~~G~~i~d~did~~edKPWR~PGADiSDYFNYGFnE~TW~~Yc~kq  113 (114)
                      .....+...+.||+++.|++..|.|+|++||+||||+||+||||+|||||||||||||||+||++||++|
T Consensus       126 ~~~~~~~a~~kg~~~~~dld~~g~in~v~I~evDldsfEdKPWRkPGADiSDYFNYGFNEeTWk~YC~rQ  195 (538)
T KOG1049|consen  126 VKATNKSAAPKGKMSQVDLDTPGTINGVPIFEVDLDSFEDKPWRKPGADISDYFNYGFNEETWKAYCERQ  195 (538)
T ss_pred             ccccccccccccCcccccccCCcccCCccceeecHHHhccCcccCCCccchhhhccccCHHHHHHHHHHH
Confidence            4434566777899999999999999999999999999999999999999999999999999999999998

>PF05182 Fip1: Fip1 motif; InterPro: IPR007854 This short motif is about 40 amino acids in length and is found in the Fip1 protein that is a component of a Saccharomyces cerevisiae pre-mRNA polyadenylation factor that directly interacts with poly(A) polymerase []

Probab=99.96  E-value=9e-30  Score=161.16  Aligned_cols=41  Identities=59%  Similarity=1.197  Sum_probs=39.3

Q ss_pred             eeeCcccCCCCCCCCCCCCCCcccccCCCHHHHHHHHhhcC
Q psy8798          74 HEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSSI  114 (114)
Q Consensus        74 ~d~did~~edKPWR~PGADiSDYFNYGFnE~TW~~Yc~kq~  114 (114)
                      |+||||++++||||+|||||||||||||||+||++||++|.
T Consensus         1 fd~d~d~~~~KPWr~pGaDisDyFNYGf~E~tW~~Y~~kq~   41 (45)
T PF05182_consen    1 FDVDIDSFEEKPWRKPGADISDYFNYGFNEETWREYCKKQR   41 (45)
T ss_pred             CCcChhhhccCCccCCCCChhhhcCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999983

This region of Fip1 is needed for the interaction with the Yth1 subunit of the complex and for specific polyadenylation of the cleaved mRNA precursor [].

>COG5213 FIP1 Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]

Probab=99.93  E-value=2.6e-27  Score=192.09  Aligned_cols=54  Identities=41%  Similarity=0.814  Sum_probs=52.7

Q ss_pred             hhhhcccccCCccceeeCcccCCCCCCCCCCCCCCcccccCCCHHHHHHHHhhc
Q psy8798          60 EEFEQIGTINSTAPHEFNLDQLEDKPWRKPGADITDYFNYGFTEETWRAHHMSS  113 (114)
Q Consensus        60 ~d~~~~g~~~G~~i~d~did~~edKPWR~PGADiSDYFNYGFnE~TW~~Yc~kq  113 (114)
                      +|++++++++|+.|++|||+.|.+||||+|||||||||||||||+||++||++|
T Consensus       105 id~dke~t~dg~nI~~iD~Esf~dKPWrkPGAdiSDYFNYGFnEfTW~eYc~~Q  158 (266)
T COG5213         105 IDEDKEETEDGQNILDIDIESFKDKPWRKPGADISDYFNYGFNEFTWKEYCHMQ  158 (266)
T ss_pred             ccccccccccCcceeeechhhhccCcccCCCcchhhhhhccchhhHHHHHHHHH
Confidence            688999999999999999999999999999999999999999999999999998

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00