Psyllid ID: psy890
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 131 | 2.2.26 [Sep-21-2011] | |||||||
| Q9VYF8 | 301 | 2-methoxy-6-polyprenyl-1, | yes | N/A | 0.900 | 0.392 | 0.528 | 7e-31 | |
| A1UUE1 | 260 | Ubiquinone/menaquinone bi | yes | N/A | 0.801 | 0.403 | 0.563 | 7e-28 | |
| Q8FUZ3 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 7e-28 | |
| A9MCZ2 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 8e-28 | |
| Q8YDE4 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 8e-28 | |
| C0RMK3 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 8e-28 | |
| Q576Q0 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 8e-28 | |
| Q2YJM4 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 8e-28 | |
| B2SC50 | 269 | Ubiquinone/menaquinone bi | yes | N/A | 0.763 | 0.371 | 0.596 | 8e-28 | |
| Q5ZLL5 | 311 | 2-methoxy-6-polyprenyl-1, | yes | N/A | 0.877 | 0.369 | 0.482 | 1e-27 |
| >sp|Q9VYF8|COQ5_DROME 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Drosophila melanogaster GN=coq5 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 86/123 (69%), Gaps = 5/123 (4%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR--DLFKVPVPNPRLR 68
GDI FR+L Y++ P + HVTV+DIN+ ML+VGE+RA+ L + N +
Sbjct: 112 GDITFRYLRYLNNQPN---PQQRPSHVTVSDINQHMLNVGEERAKRLGLTTDQLSNCTVA 168
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ A+AE+LP S++AYTIAFGIRN T +DK LSEAYRVL+PGGRF+CLEFSH+ N
Sbjct: 169 WQCADAEKLPFPDASFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNET 228
Query: 129 LQW 131
+QW
Sbjct: 229 MQW 231
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Drosophila melanogaster (taxid: 7227) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 1 |
| >sp|A1UUE1|UBIE_BARBK Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 80/119 (67%), Gaps = 14/119 (11%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR LN K H TV DIN +ML+VG++RA ++ P + F+
Sbjct: 84 GDIAFRILNASRK----------KAHATVLDINHSMLNVGKKRA----QINGLAPFIDFV 129
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
EANAE+LP S+ AYTIAFGIRNV IDKALSEA+RVLKPGGRFLCLEFS+V +L
Sbjct: 130 EANAEQLPFSDQSFDAYTIAFGIRNVPHIDKALSEAFRVLKPGGRFLCLEFSNVEMPLL 188
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Bartonella bacilliformis (strain ATCC 35685 / KC583) (taxid: 360095) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8FUZ3|UBIE_BRUSU Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella suis biovar 1 (strain 1330) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (306), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEVSGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella suis biovar 1 (strain 1330) (taxid: 204722) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|A9MCZ2|UBIE_BRUC2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEVSGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella canis (strain ATCC 23365 / NCTC 10854) (taxid: 483179) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|C0RMK3|UBIE_BRUMB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella melitensis biotype 2 (strain ATCC 23457) (taxid: 546272) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q576Q0|UBIE_BRUAB Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus biovar 1 (strain 9-941) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus biovar 1 (strain 9-941) (taxid: 262698) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q2YJM4|UBIE_BRUA2 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus (strain 2308) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus (strain 2308) (taxid: 359391) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|B2SC50|UBIE_BRUA1 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE OS=Brucella abortus (strain S19) GN=ubiE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 14/114 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR + + HVT+ DIN +ML VG +RA + K + N L F+
Sbjct: 93 GDIAFRIVEASGR----------QAHVTILDINGSMLGVGRERA--IKKGLIDN--LEFV 138
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
EANAEELP E +S+ AYTIAFGIRNV IDKALSEAYRVLKPGGRFLCLEFS V
Sbjct: 139 EANAEELPFEDNSFDAYTIAFGIRNVPHIDKALSEAYRVLKPGGRFLCLEFSEV 192
|
Methyltransferase required for the conversion of demethylmenaquinone (DMKH2) to menaquinone (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Brucella abortus (strain S19) (taxid: 430066) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
| >sp|Q5ZLL5|COQ5_CHICK 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial OS=Gallus gallus GN=COQ5 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 82/143 (57%), Gaps = 28/143 (19%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPH------------------------VTVADINRAM 46
GDIAFRFLNYV + L + H V V DIN+ M
Sbjct: 101 GDIAFRFLNYVRSVRERQLQQKLRHHQNLSWQEISKSYQEEKSNPLGDSQVVVCDINKEM 160
Query: 47 LDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEA 106
L G+Q+A+ L + L ++ NAEEL + D + YTIAFGIRNVTRID AL EA
Sbjct: 161 LKAGKQKAQHLGY----SEGLSWVLGNAEELHFDDDKFDVYTIAFGIRNVTRIDLALQEA 216
Query: 107 YRVLKPGGRFLCLEFSHVNNSML 129
YRVLKPGGRFLCLEFSHV+N +L
Sbjct: 217 YRVLKPGGRFLCLEFSHVSNPLL 239
|
Methyltransferase required for the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2). Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 0 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 131 | ||||||
| 195396439 | 291 | GJ16746 [Drosophila virilis] gi|19414660 | 0.900 | 0.405 | 0.585 | 3e-34 | |
| 157117782 | 293 | ubiquinone/menaquinone biosynthesis meth | 0.900 | 0.402 | 0.611 | 4e-34 | |
| 195133400 | 296 | GI16372 [Drosophila mojavensis] gi|19390 | 0.900 | 0.398 | 0.577 | 5e-34 | |
| 195048884 | 282 | GH24114 [Drosophila grimshawi] gi|193893 | 0.900 | 0.418 | 0.552 | 5e-33 | |
| 170028751 | 293 | ubiquinone/menaquinone biosynthesis meth | 0.893 | 0.399 | 0.603 | 1e-32 | |
| 156537862 | 297 | PREDICTED: 2-methoxy-6-polyprenyl-1,4-be | 0.893 | 0.393 | 0.581 | 2e-32 | |
| 240848835 | 272 | ubiquinone/menaquinone biosynthesis meth | 0.847 | 0.408 | 0.586 | 4e-32 | |
| 194763759 | 302 | GF20959 [Drosophila ananassae] gi|190618 | 0.900 | 0.390 | 0.560 | 8e-32 | |
| 383849455 | 290 | PREDICTED: 2-methoxy-6-polyprenyl-1,4-be | 0.908 | 0.410 | 0.565 | 1e-31 | |
| 380023723 | 291 | PREDICTED: 2-methoxy-6-polyprenyl-1,4-be | 0.900 | 0.405 | 0.560 | 2e-31 |
| >gi|195396439|ref|XP_002056839.1| GJ16746 [Drosophila virilis] gi|194146606|gb|EDW62325.1| GJ16746 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 92/123 (74%), Gaps = 5/123 (4%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP--VPNPRLR 68
GDI+FR+L Y+ K P E HVTV+DIN+ ML+VG++RAR L +PN +
Sbjct: 102 GDISFRYLKYLAKQPNTKQRE---SHVTVSDINQHMLNVGKERARQLGLTAERLPNASID 158
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ A+AE+LP +SDS++AYTIAFGIRN T +DK LSEAYRVL+PGGRF+CLEFSH+NN
Sbjct: 159 WQCADAEKLPFKSDSFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLNNET 218
Query: 129 LQW 131
LQW
Sbjct: 219 LQW 221
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157117782|ref|XP_001658935.1| ubiquinone/menaquinone biosynthesis methyltransferase [Aedes aegypti] gi|108884602|gb|EAT48827.1| AAEL000178-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 149 bits (376), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 91/121 (75%), Gaps = 3/121 (2%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR+L Y++ PP HVTV+DIN+ ML+VG++R + L P N + ++
Sbjct: 106 GDIAFRYLKYLNNQPPE--DNQATNHVTVSDINQNMLNVGQERYKRLNIKPT-NCTVDWV 162
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
ANAEELP E +SY+AYTIAFGIRNVT IDK LSEAYRVLKPGGRF+CLEFSHV+N L+
Sbjct: 163 CANAEELPFEDNSYTAYTIAFGIRNVTHIDKVLSEAYRVLKPGGRFMCLEFSHVSNDYLR 222
Query: 131 W 131
W
Sbjct: 223 W 223
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195133400|ref|XP_002011127.1| GI16372 [Drosophila mojavensis] gi|193907102|gb|EDW05969.1| GI16372 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 71/123 (57%), Positives = 92/123 (74%), Gaps = 5/123 (4%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP--VPNPRLR 68
GDI+FR+L Y+ K+P E HVTV+DIN+ ML+VGE+RAR L +PN +
Sbjct: 107 GDISFRYLKYLAKMPNPKQRE---SHVTVSDINQHMLNVGEERARQLGLTADRLPNASIA 163
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ A+AE+LP +SD+Y+AYTIAFGIRN T +DK LSEAYRVL+PGGRF+CLEFSH+ N
Sbjct: 164 WQCADAEKLPFKSDTYTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNET 223
Query: 129 LQW 131
+QW
Sbjct: 224 MQW 226
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195048884|ref|XP_001992610.1| GH24114 [Drosophila grimshawi] gi|193893451|gb|EDV92317.1| GH24114 [Drosophila grimshawi] | Back alignment and taxonomy information |
|---|
Score = 145 bits (366), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 92/123 (74%), Gaps = 5/123 (4%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLR 68
GDI+FR+L Y++K P + + HVT++DIN+ ML+VGE+RAR L + N +
Sbjct: 93 GDISFRYLKYLEKQPNH---QGRKSHVTISDINQHMLNVGEERARQQGLTAERLSNSSID 149
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ A+AE+LP +SDS++AYTIAFGIRN T +DK LSEAYRVL+PGGRF+CLEFSH+ N
Sbjct: 150 WQCADAEKLPFQSDSFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNET 209
Query: 129 LQW 131
+QW
Sbjct: 210 MQW 212
|
Source: Drosophila grimshawi Species: Drosophila grimshawi Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170028751|ref|XP_001842258.1| ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Culex quinquefasciatus] gi|167877943|gb|EDS41326.1| ubiquinone/menaquinone biosynthesis methyltransferase ubiE [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 92/121 (76%), Gaps = 4/121 (3%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR+L Y++ P + + HVTV+DIN+ MLDVG+ R ++L P N + ++
Sbjct: 107 GDIAFRYLKYLNNQPQDGEQPN---HVTVSDINQNMLDVGQARFKNLGIQP-SNCTVDWV 162
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
A+AE+LP E +SY+AYTIAFGIRNVT ID+ALSEAYRVLKPGGRFLCLEFSHV N L+
Sbjct: 163 CADAEKLPFEDNSYTAYTIAFGIRNVTHIDRALSEAYRVLKPGGRFLCLEFSHVTNDYLR 222
Query: 131 W 131
W
Sbjct: 223 W 223
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156537862|ref|XP_001608106.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 90/122 (73%), Gaps = 5/122 (4%)
Query: 11 GDIAFRFLNYV-DKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
GDI FR+L Y+ +K P + HVTV DIN MLDVG+ RA+ + +
Sbjct: 110 GDITFRYLTYLKNKCNPKAIK----SHVTVCDINANMLDVGQVRAKRQGFTVENGYDIAW 165
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ANAEELP +S++Y+AYTIAFGIRNVTR+DKAL+EAYRVL+PGGRFLCLEFSHV+N +L
Sbjct: 166 QQANAEELPFDSETYTAYTIAFGIRNVTRVDKALAEAYRVLRPGGRFLCLEFSHVDNDLL 225
Query: 130 QW 131
+W
Sbjct: 226 RW 227
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|240848835|ref|NP_001155605.1| ubiquinone/menaquinone biosynthesis methyltransferase ubiE-like [Acyrthosiphon pisum] gi|239788060|dbj|BAH70726.1| ACYPI005028 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/121 (58%), Positives = 90/121 (74%), Gaps = 10/121 (8%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GDIAFR+LNY+ + + HVT+ADIN +ML+ G++RA +L + + ++
Sbjct: 92 GDIAFRYLNYISDMKGD-------GHVTIADINGSMLEEGKKRALNL---KLNQDNVSWV 141
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
E +AE LP+ESDSYSAYTIAFGIRNVT IDKAL EAYRVL+PGGRFLCLEFS VN + L+
Sbjct: 142 ECDAENLPMESDSYSAYTIAFGIRNVTHIDKALDEAYRVLEPGGRFLCLEFSQVNPAALR 201
Query: 131 W 131
W
Sbjct: 202 W 202
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194763759|ref|XP_001964000.1| GF20959 [Drosophila ananassae] gi|190618925|gb|EDV34449.1| GF20959 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 89/123 (72%), Gaps = 5/123 (4%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP--VPNPRLR 68
GDI+FR+L Y+ P T HVTV+DIN+ MLDVGE+RAR L +PN +
Sbjct: 113 GDISFRYLKYLANQPNPTKR---ISHVTVSDINQHMLDVGEERARRLGLTSDRLPNSSVA 169
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ A+AE+LP + +S++AYTIAFGIRN T +DK LSEAYRVL+PGGRF+CLEFSH+ N
Sbjct: 170 WKCADAEKLPFQDESFNAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNET 229
Query: 129 LQW 131
+QW
Sbjct: 230 MQW 232
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383849455|ref|XP_003700360.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 140 bits (354), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 84/122 (68%), Gaps = 3/122 (2%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
GDI FR+LNY+ P ++ VTV DIN ML VG+ RA + N + +
Sbjct: 102 TGDITFRYLNYLKNTPN---PQNFKSSVTVCDINENMLKVGKVRAERQGWLDQQNIEIDW 158
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
E NAEELP ++DSY+AYTIAFGIRNVT IDK L+EAYRVL PGGRF+CLEFSHVNN +
Sbjct: 159 QECNAEELPFDNDSYTAYTIAFGIRNVTHIDKVLAEAYRVLTPGGRFMCLEFSHVNNDIF 218
Query: 130 QW 131
+W
Sbjct: 219 RW 220
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380023723|ref|XP_003695662.1| PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 140 bits (353), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 88/123 (71%), Gaps = 5/123 (4%)
Query: 10 PGDIAFRFLNYVDKLPPNTLS-EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLR 68
GDI FR+LNY+ NTL+ + VTV DIN ML VG+ R + L + N +
Sbjct: 103 TGDITFRYLNYL----KNTLNHQDLKSSVTVCDINENMLKVGKDRIKKLGWINQNNVDID 158
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ +++AE LP ++DSY+AYTIAFGIRNVT IDK LSEAYRVL PGGRF+CLEFSHV+N+
Sbjct: 159 WQQSDAENLPFKNDSYTAYTIAFGIRNVTHIDKVLSEAYRVLTPGGRFMCLEFSHVDNNF 218
Query: 129 LQW 131
L+W
Sbjct: 219 LKW 221
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 131 | ||||||
| UNIPROTKB|F1NBB0 | 311 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.679 | 0.286 | 0.623 | 3.7e-29 | |
| UNIPROTKB|F1NXQ7 | 318 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.679 | 0.279 | 0.623 | 3.7e-29 | |
| FB|FBgn0030460 | 301 | CG2453 [Drosophila melanogaste | 0.900 | 0.392 | 0.536 | 1.5e-28 | |
| UNIPROTKB|Q5ZLL5 | 311 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.679 | 0.286 | 0.602 | 6.6e-28 | |
| UNIPROTKB|Q0P5A2 | 330 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.679 | 0.269 | 0.578 | 2.2e-27 | |
| UNIPROTKB|E2RF28 | 327 | COQ5 "Uncharacterized protein" | 0.671 | 0.269 | 0.574 | 7.4e-27 | |
| UNIPROTKB|F1RJK0 | 329 | COQ5 "Uncharacterized protein" | 0.679 | 0.270 | 0.557 | 1.5e-26 | |
| MGI|MGI:1098643 | 327 | Coq5 "coenzyme Q5 homolog, met | 0.671 | 0.269 | 0.586 | 3.1e-26 | |
| UNIPROTKB|F8VVX6 | 213 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.679 | 0.417 | 0.569 | 5.1e-26 | |
| UNIPROTKB|Q5HYK3 | 327 | COQ5 "2-methoxy-6-polyprenyl-1 | 0.679 | 0.272 | 0.569 | 5.1e-26 |
| UNIPROTKB|F1NBB0 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 58/93 (62%), Positives = 68/93 (73%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V V DIN+ ML G+QRA+ L + L ++ NAEELP + D + YTIAFGIRNV
Sbjct: 151 VVVCDINKEMLKAGKQRAQHLGY----SEGLSWVLGNAEELPFDDDKFDVYTIAFGIRNV 206
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
TRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 207 TRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 239
|
|
| UNIPROTKB|F1NXQ7 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 58/93 (62%), Positives = 68/93 (73%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V V DIN+ ML G+QRA+ L + L ++ NAEELP + D + YTIAFGIRNV
Sbjct: 158 VVVCDINKEMLKAGKQRAQHLGY----SEGLSWVLGNAEELPFDDDKFDVYTIAFGIRNV 213
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
TRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 214 TRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 246
|
|
| FB|FBgn0030460 CG2453 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 66/123 (53%), Positives = 87/123 (70%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP--VPNPRLR 68
GDI FR+L Y++ PN + HVTV+DIN+ ML+VGE+RA+ L + N +
Sbjct: 112 GDITFRYLRYLNN-QPNP--QQRPSHVTVSDINQHMLNVGEERAKRLGLTTDQLSNCTVA 168
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ A+AE+LP S++AYTIAFGIRN T +DK LSEAYRVL+PGGRF+CLEFSH+ N
Sbjct: 169 WQCADAEKLPFPDASFTAYTIAFGIRNCTHVDKVLSEAYRVLQPGGRFMCLEFSHLTNET 228
Query: 129 LQW 131
+QW
Sbjct: 229 MQW 231
|
|
| UNIPROTKB|Q5ZLL5 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 265 (98.3 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 56/93 (60%), Positives = 67/93 (72%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V V DIN+ ML G+Q+A+ L + L ++ NAEEL + D + YTIAFGIRNV
Sbjct: 151 VVVCDINKEMLKAGKQKAQHLGY----SEGLSWVLGNAEELHFDDDKFDVYTIAFGIRNV 206
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
TRID AL EAYRVLKPGGRFLCLEFSHV+N +L
Sbjct: 207 TRIDLALQEAYRVLKPGGRFLCLEFSHVSNPLL 239
|
|
| UNIPROTKB|Q0P5A2 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 264 (98.0 bits), Expect = 2.2e-27, Sum P(2) = 2.2e-27
Identities = 55/95 (57%), Positives = 69/95 (72%)
Query: 36 HVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 94
HV V DIN+ ML +G+Q+AR +K L ++ +AEELP + + + YTIAFGIR
Sbjct: 166 HVMVCDINKEMLKIGKQKARAQGYKAG-----LAWILGDAEELPFDDNKFDVYTIAFGIR 220
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
NVT ID+AL EA+RVLKPGGRFLCLEFS VNN +L
Sbjct: 221 NVTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLL 255
|
|
| UNIPROTKB|E2RF28 COQ5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 7.4e-27, Sum P(2) = 7.4e-27
Identities = 54/94 (57%), Positives = 68/94 (72%)
Query: 37 VTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V V DIN+ ML +G+Q+AR +K L ++ +AEELP + D + YTIAFGIRN
Sbjct: 167 VVVCDINKEMLKIGKQKARAQGYKAG-----LAWVLGDAEELPFDDDKFDVYTIAFGIRN 221
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
VT ID+AL EA+RVLKPGGRFLCLEFS VNN ++
Sbjct: 222 VTHIDQALQEAHRVLKPGGRFLCLEFSQVNNPLI 255
|
|
| UNIPROTKB|F1RJK0 COQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 256 (95.2 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 53/95 (55%), Positives = 67/95 (70%)
Query: 36 HVTVADINRAMLDVGEQRA-RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIR 94
HV + DINR ML +G ++A +K L ++ +AEELP + D + YTIAFGIR
Sbjct: 168 HVMICDINREMLKIGRRKACAQGYKAG-----LDWVLGDAEELPFDDDKFDVYTIAFGIR 222
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
NVT ID+AL EA+RVLKPGGRFLCLEFS VNN ++
Sbjct: 223 NVTHIDRALQEAHRVLKPGGRFLCLEFSQVNNPLV 257
|
|
| MGI|MGI:1098643 Coq5 "coenzyme Q5 homolog, methyltransferase (yeast)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 258 (95.9 bits), Expect = 3.1e-26, Sum P(2) = 3.1e-26
Identities = 54/92 (58%), Positives = 66/92 (71%)
Query: 38 TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT 97
TV DINR ML VG+Q+A D L ++ +AEELP + DS+ YTIAFGIRNVT
Sbjct: 168 TVCDINREMLKVGKQKALDQGHTA----GLAWVLGDAEELPFDDDSFDVYTIAFGIRNVT 223
Query: 98 RIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
ID+AL EA+RVLKPGGRFLCLEF VN+ ++
Sbjct: 224 HIDQALQEAHRVLKPGGRFLCLEFGQVNDPLI 255
|
|
| UNIPROTKB|F8VVX6 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 53/93 (56%), Positives = 65/93 (69%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V V DIN+ ML VG+Q+A L ++ +AEELP + D + YTIAFGIRNV
Sbjct: 86 VVVCDINKEMLKVGKQKAL----AQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNV 141
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
T ID+AL EA+RVLKPGGRFLCLEFS VNN ++
Sbjct: 142 THIDQALQEAHRVLKPGGRFLCLEFSQVNNPLI 174
|
|
| UNIPROTKB|Q5HYK3 COQ5 "2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 251 (93.4 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
Identities = 53/93 (56%), Positives = 65/93 (69%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V V DIN+ ML VG+Q+A L ++ +AEELP + D + YTIAFGIRNV
Sbjct: 167 VVVCDINKEMLKVGKQKAL----AQGYRAGLAWVLGDAEELPFDDDKFDIYTIAFGIRNV 222
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
T ID+AL EA+RVLKPGGRFLCLEFS VNN ++
Sbjct: 223 THIDQALQEAHRVLKPGGRFLCLEFSQVNNPLI 255
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B9JZF4 | UBIE_AGRVS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5158 | 0.8167 | 0.4147 | yes | N/A |
| A1UUE1 | UBIE_BARBK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5630 | 0.8015 | 0.4038 | yes | N/A |
| B3Q619 | UBIE_RHOPT | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5213 | 0.7557 | 0.3913 | yes | N/A |
| Q8UIH5 | UBIE_AGRT5 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5210 | 0.8015 | 0.4054 | yes | N/A |
| Q92SK7 | UBIE_RHIME | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5083 | 0.8091 | 0.4108 | yes | N/A |
| A4YJH0 | UBIE_BRASO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5175 | 0.7633 | 0.3952 | yes | N/A |
| A6UFF7 | UBIE_SINMW | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5042 | 0.8015 | 0.4069 | yes | N/A |
| Q9VYF8 | COQ5_DROME | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5284 | 0.9007 | 0.3920 | yes | N/A |
| B8IJ00 | UBIE_METNO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5826 | 0.7633 | 0.3968 | yes | N/A |
| Q2YJM4 | UBIE_BRUA2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| Q2KDB0 | UBIE_RHIEC | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5462 | 0.8015 | 0.4069 | yes | N/A |
| Q576Q0 | UBIE_BRUAB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| A9WW74 | UBIE_BRUSI | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5877 | 0.7633 | 0.3717 | yes | N/A |
| Q13EN8 | UBIE_RHOPS | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5213 | 0.7557 | 0.3913 | yes | N/A |
| C3MCY6 | UBIE_RHISN | 2, ., 1, ., 1, ., 2, 0, 1 | 0.525 | 0.8091 | 0.4108 | yes | N/A |
| B5ZYK8 | UBIE_RHILW | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5378 | 0.8015 | 0.4069 | yes | N/A |
| B2SC50 | UBIE_BRUA1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| A9ILA7 | UBIE_BART1 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5614 | 0.7633 | 0.3846 | yes | N/A |
| B9J7S8 | UBIE_AGRRK | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5652 | 0.7709 | 0.3914 | yes | N/A |
| A5E888 | UBIE_BRASB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5842 | 0.6488 | 0.3359 | yes | N/A |
| A9MCZ2 | UBIE_BRUC2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| Q8FUZ3 | UBIE_BRUSU | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| C0RMK3 | UBIE_BRUMB | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| B3PZ92 | UBIE_RHIE6 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5294 | 0.8015 | 0.4069 | yes | N/A |
| Q6G577 | UBIE_BARHE | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5462 | 0.8015 | 0.4038 | yes | N/A |
| Q6G1I2 | UBIE_BARQU | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5462 | 0.8015 | 0.4038 | yes | N/A |
| Q2J2H9 | UBIE_RHOP2 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5128 | 0.7557 | 0.3913 | yes | N/A |
| A6WYI0 | UBIE_OCHA4 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5789 | 0.7633 | 0.3802 | yes | N/A |
| Q98GV1 | UBIE_RHILO | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5378 | 0.8015 | 0.4069 | yes | N/A |
| Q8YDE4 | UBIE_BRUME | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5964 | 0.7633 | 0.3717 | yes | N/A |
| Q1MME0 | UBIE_RHIL3 | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5378 | 0.8015 | 0.4069 | yes | N/A |
| Q6NDM2 | UBIE_RHOPA | 2, ., 1, ., 1, ., 2, 0, 1 | 0.5213 | 0.7557 | 0.3913 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.691 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 131 | |||
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 1e-42 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-36 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 5e-36 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 1e-34 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 3e-16 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-15 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 2e-10 | |
| PLN02232 | 160 | PLN02232, PLN02232, ubiquinone biosynthesis methyl | 2e-10 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-09 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 9e-09 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-08 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-07 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 1e-05 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 4e-05 | |
| PRK11873 | 272 | PRK11873, arsM, arsenite S-adenosylmethyltransfera | 1e-04 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 2e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 7e-04 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 1e-42
Identities = 50/120 (41%), Positives = 63/120 (52%), Gaps = 14/120 (11%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V K V D + ML VG ++ RDL + F+
Sbjct: 63 GDLAIALAKAVGK----------TGEVVGLDFSEGMLAVGREKLRDLGLSG----NVEFV 108
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
+ +AE LP +S+ A TIAFG+RNV IDKAL E YRVLKPGGR + LEFS N L+
Sbjct: 109 QGDAEALPFPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLK 168
|
Length = 239 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 2e-36
Identities = 47/116 (40%), Positives = 61/116 (52%), Gaps = 16/116 (13%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A V V DI+ +ML+V ++ + V F+
Sbjct: 63 GDMALLLAKSVGTG-----------EVVGLDISESMLEVAREKLKKKGVQNV-----EFV 106
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
+AE LP +S+ A TI+FG+RNVT IDKAL E YRVLKPGGR L LEFS +N
Sbjct: 107 VGDAENLPFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162
|
Length = 238 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 5e-36
Identities = 49/120 (40%), Positives = 68/120 (56%), Gaps = 17/120 (14%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD+A K P+ VT D + ML+V ++++ + F+
Sbjct: 51 GDLAIELA----KSAPDRGK------VTGVDFSSEMLEVAKKKSELPLNIE-------FI 93
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQ 130
+A+AE LP E +S+ A TIAFG+RNVT I KAL E YRVLKPGGR + LEFS N++L+
Sbjct: 94 QADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLK 153
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 1e-34
Identities = 49/119 (41%), Positives = 63/119 (52%), Gaps = 15/119 (12%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
GD F + + V DIN ML GE++A++ K + FL
Sbjct: 59 GDWTFGLSDSAGS----------SGKVVGLDINENMLKEGEKKAKEEGKY-----NIEFL 103
Query: 71 EANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ NAEELP E DS+ TI+FG+RN K L EA+RVLKPGGR +CLEFS N +L
Sbjct: 104 QGNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLL 162
|
Length = 233 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-16
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L+E P HV D + ML VG Q+ +D + + NA ELP + +S+
Sbjct: 63 LAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-----HNVELVHGNAMELPFDDNSFDY 117
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
TI FG+RNV + L E YRV+KPGG+ +CLE S
Sbjct: 118 VTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETS 153
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-15
Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 11/90 (12%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ VT D++ ML + +R +F+ +AE+LP +S+
Sbjct: 14 LARRGGARVTGVDLSPEMLALARKR-----------APRKFVVGDAEDLPFPDESFDVVV 62
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + ++ ++AL E RVLKPGG+ +
Sbjct: 63 SSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 56.1 bits (135), Expect = 2e-10
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
V D + L V R K N + ++E +A +LP + + A T+ +G+RNV
Sbjct: 101 VMGLDFSSEQLAVAASRQELKAKSCYKN--IEWIEGDATDLPFDDCYFDAITMGYGLRNV 158
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSHVNN----SMLQW 131
KA+ E YRVLKPG R L+F+ SM +W
Sbjct: 159 VDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEW 197
|
Length = 261 |
| >gnl|CDD|165876 PLN02232, PLN02232, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 2e-10
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 53 RARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112
+AR +K + ++E +A +LP + + A T+ +G+RNV +A+ E YRVLKP
Sbjct: 20 KARSCYKC------IEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKP 73
Query: 113 GGRFLCLEFSHVNNSM 128
G R L+F+ N S+
Sbjct: 74 GSRVSILDFNKSNQSV 89
|
Length = 160 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-09
Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 7/92 (7%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD-SYS-A 86
L+ VT DI+ L++ + A L + L+ +AEELP E+D S+
Sbjct: 16 LASGPGARVTGVDISPVALELARKAAAALL-----ADNVEVLKGDAEELPPEADESFDVI 70
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ V + + L EA R+LKPGG +
Sbjct: 71 ISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-09
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 41 DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRID 100
D + AML + ++RA L P + F+ +A+ LP S+ A ++++
Sbjct: 51 DRSEAMLALAKERAAGL------GPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPA 104
Query: 101 KALSEAYRVLKPGGRFLCLEF 121
+AL+E RVL+PGGR + L+
Sbjct: 105 RALAEIARVLRPGGRVVVLDT 125
|
Length = 241 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-08
Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 18/119 (15%)
Query: 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL 70
G + F +KL P V DI+ ++ ++ A+ L + F+
Sbjct: 15 GYLTFILA---EKLGPG-------AEVVGIDISEEAIEKAKENAKKLGY-----ENVEFI 59
Query: 71 EANAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
+ + EELP +E +S+ + ++ DK L E RVLKPGG + + ++
Sbjct: 60 QGDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSDPVLLSE 118
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-07
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 35 PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIA---F 91
VT DI++ L++ ++R RD P++RF+ A+A +LP E S+ A
Sbjct: 21 SSVTGVDISKEALELAKERLRD------KGPKVRFVVADARDLPFEEGSFDLVICAGLSL 74
Query: 92 GIRNVTRIDKALSEAYRVLKPGG 114
+ ++ L EA R+L+PGG
Sbjct: 75 DYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 1e-05
Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
T DI+ A L+ +R L + R+R +A +L S + + + +
Sbjct: 22 EYTGVDISPAALEAAAERLAAL--GLLDAVRVRLDVLDAIDLDPGS--FDVVVASNVLHH 77
Query: 96 VTRIDKALSEAYRVLKPGGRF 116
+ L R+LKPGG
Sbjct: 78 LADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 4e-05
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D++ ML++ + A+ PR+ F++ +A + + + A I G +
Sbjct: 27 RVTGVDLSPEMLELARENAKLAL-----GPRITFVQGDAPDALDLLEGFDAVFIGGGGGD 81
Query: 96 VTRIDKALSEAYRVLKPGGRFL 117
+ + L +LKPGGR +
Sbjct: 82 L---LELLDALASLLKPGGRLV 100
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|237007 PRK11873, arsM, arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 1e-04
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 10/53 (18%)
Query: 69 FLEANAEELPIESDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRF 116
F E LP+ +S I I N ++ EA+RVLKPGGRF
Sbjct: 132 FRLGEIEALPVADNS--VDVI---ISNCVINLSPDKERVFKEAFRVLKPGGRF 179
|
Length = 272 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 2e-04
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 68 RFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 115
+ +E +AE+LP +D Y A I + + EAYRVLK GG+
Sbjct: 163 KIIEGDAEDLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGK 210
|
Length = 340 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 37.6 bits (84), Expect = 7e-04
Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+V D++ ML + RA + +A LP E + I+ + +
Sbjct: 74 YVVGVDLSPEMLALARARAEGA---GLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ KAL E RVLKPGGR + + +
Sbjct: 131 LLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRL 166
|
Length = 257 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 131 | |||
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.95 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.94 | |
| KOG1540|consensus | 296 | 99.92 | ||
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.89 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.88 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.87 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.85 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.85 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.84 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.83 | |
| KOG4300|consensus | 252 | 99.82 | ||
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.82 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.82 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.81 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.81 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.8 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.8 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.8 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.79 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.79 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.78 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.78 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.78 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.78 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.78 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.78 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.78 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.77 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.77 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.77 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.76 | |
| KOG1270|consensus | 282 | 99.75 | ||
| PRK08317 | 241 | hypothetical protein; Provisional | 99.75 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.75 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.75 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.74 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.74 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.74 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.74 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.73 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.73 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.72 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.71 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.71 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.7 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.7 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.7 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.7 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.7 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.7 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.69 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.69 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.69 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.68 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.68 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.68 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.67 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.65 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.64 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.64 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.63 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.63 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.63 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.63 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.63 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.63 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.62 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.62 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.62 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.62 | |
| KOG2361|consensus | 264 | 99.61 | ||
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.61 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.6 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.59 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.58 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.58 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.58 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.57 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.56 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.56 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.56 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.56 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.56 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.55 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.55 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.54 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.54 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.54 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.53 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.53 | |
| KOG1271|consensus | 227 | 99.53 | ||
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.53 | |
| KOG3010|consensus | 261 | 99.53 | ||
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.53 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.52 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.51 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.5 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.5 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.5 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.48 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.48 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.47 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.47 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.46 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.46 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.46 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.46 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.46 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.45 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.45 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.45 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.45 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.45 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.44 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.44 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.43 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.43 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.42 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.41 | |
| KOG2940|consensus | 325 | 99.41 | ||
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.4 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.4 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.38 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.38 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.38 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.38 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.36 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.36 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.35 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.35 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.34 | |
| KOG2899|consensus | 288 | 99.34 | ||
| PLN02476 | 278 | O-methyltransferase | 99.34 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.34 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 99.32 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.32 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.31 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.31 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.3 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.29 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.28 | |
| PLN02366 | 308 | spermidine synthase | 99.28 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.26 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.25 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.25 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.24 | |
| KOG1541|consensus | 270 | 99.24 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 99.24 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.24 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.24 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 99.24 | |
| KOG1499|consensus | 346 | 99.22 | ||
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.22 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 99.2 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.18 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.16 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.16 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.15 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.13 | |
| KOG2904|consensus | 328 | 99.12 | ||
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.11 | |
| KOG1975|consensus | 389 | 99.09 | ||
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.09 | |
| KOG1500|consensus | 517 | 99.04 | ||
| KOG1661|consensus | 237 | 99.04 | ||
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 99.01 | |
| KOG3191|consensus | 209 | 98.99 | ||
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.98 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.98 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.97 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.97 | |
| PLN02823 | 336 | spermine synthase | 98.97 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.96 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.96 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.96 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.95 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.94 | |
| KOG1663|consensus | 237 | 98.94 | ||
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.94 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.93 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.93 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.92 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.92 | |
| KOG3045|consensus | 325 | 98.91 | ||
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.9 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.89 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.85 | |
| KOG3178|consensus | 342 | 98.85 | ||
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.84 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.83 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.83 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.82 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.81 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.81 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.8 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.8 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.8 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.78 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.78 | |
| KOG2915|consensus | 314 | 98.74 | ||
| KOG1269|consensus | 364 | 98.72 | ||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.7 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.7 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.69 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.68 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.68 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 98.66 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.66 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.65 | |
| KOG3420|consensus | 185 | 98.63 | ||
| PRK04148 | 134 | hypothetical protein; Provisional | 98.58 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.57 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.57 | |
| KOG0820|consensus | 315 | 98.55 | ||
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 98.54 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.52 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 98.49 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.48 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.48 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.47 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.45 | |
| KOG3987|consensus | 288 | 98.45 | ||
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.39 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.39 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.37 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.37 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.35 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.34 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.34 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 98.32 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.3 | |
| KOG2730|consensus | 263 | 98.27 | ||
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.25 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.24 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.24 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.22 | |
| KOG2352|consensus | 482 | 98.21 | ||
| KOG1331|consensus | 293 | 98.2 | ||
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.2 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.19 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.18 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 98.17 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 98.14 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.06 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.04 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.99 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 97.99 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.95 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 97.91 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.89 | |
| KOG1122|consensus | 460 | 97.84 | ||
| KOG3201|consensus | 201 | 97.82 | ||
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.77 | |
| KOG4589|consensus | 232 | 97.76 | ||
| KOG1709|consensus | 271 | 97.7 | ||
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.66 | |
| KOG2798|consensus | 369 | 97.55 | ||
| KOG0822|consensus | 649 | 97.52 | ||
| KOG2187|consensus | 534 | 97.52 | ||
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.51 | |
| KOG2793|consensus | 248 | 97.48 | ||
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 97.41 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.38 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.32 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 97.3 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.23 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 97.23 | |
| KOG1099|consensus | 294 | 97.18 | ||
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.17 | |
| KOG3115|consensus | 249 | 97.14 | ||
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.12 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 96.94 | |
| KOG1501|consensus | 636 | 96.9 | ||
| KOG4058|consensus | 199 | 96.86 | ||
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 96.84 | |
| KOG2539|consensus | 491 | 96.75 | ||
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 96.72 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 96.72 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.71 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.41 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.38 | |
| KOG1562|consensus | 337 | 96.37 | ||
| KOG1253|consensus | 525 | 96.2 | ||
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.13 | |
| KOG1596|consensus | 317 | 96.04 | ||
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.01 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 95.97 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.93 | |
| KOG2198|consensus | 375 | 95.93 | ||
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 95.89 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.77 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 95.76 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 95.69 | |
| KOG1227|consensus | 351 | 95.67 | ||
| PHA01634 | 156 | hypothetical protein | 95.44 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.4 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 95.24 | |
| KOG2920|consensus | 282 | 94.98 | ||
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 94.84 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.8 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.56 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.56 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 94.54 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 94.2 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 94.2 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 94.09 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 93.95 | |
| KOG2352|consensus | 482 | 93.8 | ||
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.73 | |
| KOG0024|consensus | 354 | 93.66 | ||
| KOG2651|consensus | 476 | 93.13 | ||
| KOG2671|consensus | 421 | 93.09 | ||
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 92.56 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.44 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 92.36 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.31 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 92.18 | |
| COG0541 | 451 | Ffh Signal recognition particle GTPase [Intracellu | 92.17 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 92.01 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 92.01 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 91.92 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 91.81 | |
| KOG0821|consensus | 326 | 91.71 | ||
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.66 | |
| PRK13699 | 227 | putative methylase; Provisional | 91.61 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 91.04 | |
| PF05050 | 167 | Methyltransf_21: Methyltransferase FkbM domain; In | 90.78 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 90.68 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 90.47 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 90.28 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 89.81 | |
| KOG0780|consensus | 483 | 89.67 | ||
| PF06016 | 1289 | Reovirus_L2: Reovirus core-spike protein lambda-2 | 89.19 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 89.09 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 89.04 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 88.94 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 88.77 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 88.59 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 88.05 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 87.93 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 87.92 | |
| KOG1209|consensus | 289 | 87.85 | ||
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 86.92 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 86.87 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 86.84 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 86.62 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 86.1 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 85.94 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 85.86 | |
| KOG1201|consensus | 300 | 85.82 | ||
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 85.52 | |
| cd01842 | 183 | SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SG | 85.5 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 84.78 | |
| KOG2078|consensus | 495 | 84.74 | ||
| COG1568 | 354 | Predicted methyltransferases [General function pre | 84.37 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 84.33 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 83.85 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 83.75 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 82.78 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 82.72 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 82.32 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 81.81 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 81.74 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 81.57 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 81.55 | |
| COG5379 | 414 | BtaA S-adenosylmethionine:diacylglycerol 3-amino-3 | 80.65 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 80.49 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 80.38 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 80.26 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 80.25 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 80.2 |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-27 Score=155.34 Aligned_cols=113 Identities=42% Similarity=0.633 Sum_probs=105.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||||.++..+++..+ ..+++++|+|+.|+..++++....+.. +++|+.+|++++|++
T Consensus 53 ~~vLDva~GTGd~a~~~~k~~g-----------~g~v~~~D~s~~ML~~a~~k~~~~~~~-----~i~fv~~dAe~LPf~ 116 (238)
T COG2226 53 DKVLDVACGTGDMALLLAKSVG-----------TGEVVGLDISESMLEVAREKLKKKGVQ-----NVEFVVGDAENLPFP 116 (238)
T ss_pred CEEEEecCCccHHHHHHHHhcC-----------CceEEEEECCHHHHHHHHHHhhccCcc-----ceEEEEechhhCCCC
Confidence 4799999999999999999875 579999999999999999999887654 599999999999999
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
+++||+|.++++++++++++++|++++|+|||||++++.|++.+...++
T Consensus 117 D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~ 165 (238)
T COG2226 117 DNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLLVLEFSKPDNPVL 165 (238)
T ss_pred CCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEEEEEcCCCCchhh
Confidence 9999999999999999999999999999999999999999999887654
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-26 Score=153.15 Aligned_cols=113 Identities=35% Similarity=0.559 Sum_probs=91.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||||.++..+++..+ +..+++++|+|++|++.++++....+.. +++++.+|++++|+++
T Consensus 50 ~vLDv~~GtG~~~~~l~~~~~----------~~~~v~~vD~s~~ML~~a~~k~~~~~~~-----~i~~v~~da~~lp~~d 114 (233)
T PF01209_consen 50 RVLDVACGTGDVTRELARRVG----------PNGKVVGVDISPGMLEVARKKLKREGLQ-----NIEFVQGDAEDLPFPD 114 (233)
T ss_dssp EEEEET-TTSHHHHHHGGGSS-------------EEEEEES-HHHHHHHHHHHHHTT-------SEEEEE-BTTB--S-T
T ss_pred EEEEeCCChHHHHHHHHHHCC----------CccEEEEecCCHHHHHHHHHHHHhhCCC-----CeeEEEcCHHHhcCCC
Confidence 699999999999999988865 4679999999999999999999876654 8999999999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
++||.|++.+++++++++.+.+.+++|+|||||++.++|++.+....+
T Consensus 115 ~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~ 162 (233)
T PF01209_consen 115 NSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLL 162 (233)
T ss_dssp T-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHH
T ss_pred CceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchh
Confidence 999999999999999999999999999999999999999999887554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >KOG1540|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-24 Score=142.47 Aligned_cols=122 Identities=55% Similarity=0.785 Sum_probs=108.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|++||++||||.++..++++....... ...+|+++|+|++|+..++++....++.+ ++++.|+++|++++|++
T Consensus 102 m~~lDvaGGTGDiaFril~~v~s~~~~-----~~~~V~v~Dinp~mL~vgkqRa~~~~l~~--~~~~~w~~~dAE~LpFd 174 (296)
T KOG1540|consen 102 MKVLDVAGGTGDIAFRILRHVKSQFGD-----RESKVTVLDINPHMLAVGKQRAKKRPLKA--SSRVEWVEGDAEDLPFD 174 (296)
T ss_pred CeEEEecCCcchhHHHHHHhhccccCC-----CCceEEEEeCCHHHHHHHHHHHhhcCCCc--CCceEEEeCCcccCCCC
Confidence 789999999999999999998744332 35899999999999999999987665554 23599999999999999
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
+.+||++.+.+++.+++++++.|.+++|+|||||++++.|++..+...+
T Consensus 175 d~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l 223 (296)
T KOG1540|consen 175 DDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPL 223 (296)
T ss_pred CCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHH
Confidence 9999999999999999999999999999999999999999998876544
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-22 Score=137.00 Aligned_cols=111 Identities=31% Similarity=0.453 Sum_probs=96.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|..+..+++..+ +..+++++|+|++|++.++++... .... .+++++..|+.++|+
T Consensus 76 ~VLDlGcGtG~~~~~la~~~~----------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~----~~i~~~~~d~~~lp~ 141 (261)
T PLN02233 76 RVLDLCCGSGDLAFLLSEKVG----------SDGKVMGLDFSSEQLAVAASRQELKAKSCY----KNIEWIEGDATDLPF 141 (261)
T ss_pred EEEEECCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHhhhhhhccC----CCeEEEEcccccCCC
Confidence 699999999999988887653 246899999999999999877542 1111 278999999999999
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
++++||+|++.+++++++++..++.++.++|||||++++.++..+..
T Consensus 142 ~~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~ 188 (261)
T PLN02233 142 DDCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQ 188 (261)
T ss_pred CCCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCc
Confidence 88999999999999999999999999999999999999999987664
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-22 Score=114.25 Aligned_cols=95 Identities=29% Similarity=0.428 Sum_probs=83.6
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCC
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS 83 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 83 (131)
||+|||+|..+..+++. + ..+++++|+++++++.++++.... ++.+...|...+++++++
T Consensus 1 LdiG~G~G~~~~~l~~~-~-----------~~~v~~~D~~~~~~~~~~~~~~~~--------~~~~~~~d~~~l~~~~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-G-----------GASVTGIDISEEMLEQARKRLKNE--------GVSFRQGDAEDLPFPDNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT-T-----------TCEEEEEES-HHHHHHHHHHTTTS--------TEEEEESBTTSSSS-TT-
T ss_pred CEecCcCCHHHHHHHhc-c-----------CCEEEEEeCCHHHHHHHHhccccc--------CchheeehHHhCcccccc
Confidence 79999999999999887 3 689999999999999999987653 566999999999999999
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
||+|++..++++++++.+++.++.|+|||||++++
T Consensus 61 fD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEEE
T ss_pred ccccccccceeeccCHHHHHHHHHHHcCcCeEEeC
Confidence 99999999999999999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-21 Score=120.70 Aligned_cols=106 Identities=21% Similarity=0.352 Sum_probs=93.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++.+. +..+++++|+|+++++.++++++..+.+ +++++..|+.+++
T Consensus 5 ~~iLDlGcG~G~~~~~l~~~~~----------~~~~i~gvD~s~~~i~~a~~~~~~~~~~-----ni~~~~~d~~~l~~~ 69 (152)
T PF13847_consen 5 KKILDLGCGTGRLLIQLAKELN----------PGAKIIGVDISEEMIEYAKKRAKELGLD-----NIEFIQGDIEDLPQE 69 (152)
T ss_dssp SEEEEET-TTSHHHHHHHHHST----------TTSEEEEEESSHHHHHHHHHHHHHTTST-----TEEEEESBTTCGCGC
T ss_pred CEEEEecCcCcHHHHHHHHhcC----------CCCEEEEEECcHHHHHHhhccccccccc-----ccceEEeehhccccc
Confidence 3799999999999999996543 3688999999999999999998877655 8999999999876
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++ +.||+|++..+++++.+....++++.+.|+++|++++.+..
T Consensus 70 ~~-~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 70 LE-EKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp SS-TTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cC-CCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 44 78999999999999999999999999999999999988765
|
... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=125.66 Aligned_cols=111 Identities=34% Similarity=0.493 Sum_probs=97.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.+..... ++.++..|....+++
T Consensus 47 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 47 TSALDVCCGTADWSIALAEAVG----------PEGHVIGLDFSENMLSVGRQKVKDAGLH-----NVELVHGNAMELPFD 111 (231)
T ss_pred CEEEEeCCCcCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHhcCCC-----ceEEEEechhcCCCC
Confidence 3699999999999999988764 3568999999999999999988765543 789999999888777
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.++||+|++.+++++.++....+.++.++|+|||++++.+.+.+..
T Consensus 112 ~~~fD~V~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 112 DNSFDYVTIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 7899999999999999999999999999999999999988766543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-20 Score=112.16 Aligned_cols=104 Identities=19% Similarity=0.263 Sum_probs=85.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~ 80 (131)
+|||+|||+|..+..+++..+ ..+++++|+|+++++.++++.......+ +++++..|+ .... .
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~-~ 67 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFP-----------GARVVGVDISPEMLEIARERAAEEGLSD----RITFVQGDAEFDPD-F 67 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHT-----------TSEEEEEESSHHHHHHHHHHHHHTTTTT----TEEEEESCCHGGTT-T
T ss_pred EEEEEcCcCCHHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHHhcCCCC----CeEEEECccccCcc-c
Confidence 699999999999999999554 7899999999999999999996555554 999999999 3322 2
Q ss_pred CCCeeEEEEcc-ccccc---cCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~-~l~~~---~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+.||+|++.. .++++ ++..+.+.++.+.|+|||++++.++
T Consensus 68 ~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 68 LEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp SSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred CCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 35699999998 44433 4568899999999999999998753
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.9e-20 Score=129.55 Aligned_cols=105 Identities=16% Similarity=0.104 Sum_probs=94.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+..+ +++++..|+.+.++++
T Consensus 121 ~VLDiGCG~G~~~~~La~~~------------g~~v~gvD~s~~~i~~a~~~~~~~g~~~----~v~~~~~D~~~~~~~~ 184 (340)
T PLN02244 121 RIVDVGCGIGGSSRYLARKY------------GANVKGITLSPVQAARANALAAAQGLSD----KVSFQVADALNQPFED 184 (340)
T ss_pred eEEEecCCCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEEcCcccCCCCC
Confidence 69999999999999888864 4689999999999999999887766553 7999999999988888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..+++++++...++.++.++|||||+++++++.
T Consensus 185 ~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 185 GQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred CCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 99999999999999999999999999999999999998754
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-20 Score=127.92 Aligned_cols=105 Identities=14% Similarity=0.047 Sum_probs=91.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|.++.+++.++++........ ++.++..+++++++..
T Consensus 134 ~ILDIGCG~G~~s~~La~~-------------g~~V~GID~s~~~i~~Ar~~~~~~~~~~----~i~~~~~dae~l~~~~ 196 (322)
T PLN02396 134 KFIDIGCGGGLLSEPLARM-------------GATVTGVDAVDKNVKIARLHADMDPVTS----TIEYLCTTAEKLADEG 196 (322)
T ss_pred EEEEeeCCCCHHHHHHHHc-------------CCEEEEEeCCHHHHHHHHHHHHhcCccc----ceeEEecCHHHhhhcc
Confidence 6999999999998877753 5789999999999999998765433222 7899999998887777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++++..++.++.++|||||.+++.....
T Consensus 197 ~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 197 RKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred CCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcEEEEEECCc
Confidence 899999999999999999999999999999999999876544
|
|
| >KOG4300|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.6e-20 Score=117.98 Aligned_cols=111 Identities=23% Similarity=0.299 Sum_probs=93.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCcee-EEecccccCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLR-FLEANAEELP-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-~ 79 (131)
.+||+|||||..-- .++.. +..+++++|+++.|-+.+.+.+...... ++. |+.++.++++ +
T Consensus 79 ~vLEvgcGtG~Nfk----fy~~~--------p~~svt~lDpn~~mee~~~ks~~E~k~~-----~~~~fvva~ge~l~~l 141 (252)
T KOG4300|consen 79 DVLEVGCGTGANFK----FYPWK--------PINSVTCLDPNEKMEEIADKSAAEKKPL-----QVERFVVADGENLPQL 141 (252)
T ss_pred ceEEecccCCCCcc----cccCC--------CCceEEEeCCcHHHHHHHHHHHhhccCc-----ceEEEEeechhcCccc
Confidence 47999999997632 22211 3678999999999999999888776433 565 9999999987 7
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcccc
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~ 129 (131)
.+.+||.|++.++++...++.+.|.++.++|+|||++++.||...+...+
T Consensus 142 ~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~~~ 191 (252)
T KOG4300|consen 142 ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYGFW 191 (252)
T ss_pred ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEecccccchHH
Confidence 88999999999999999999999999999999999999999998776654
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-19 Score=123.36 Aligned_cols=104 Identities=16% Similarity=0.220 Sum_probs=91.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|..+..+++. +.+++++|+|+++++.++++....+..+ +++++..|+.+++ ..
T Consensus 47 ~vLDiGcG~G~~a~~la~~-------------g~~v~~vD~s~~~l~~a~~~~~~~g~~~----~v~~~~~d~~~l~~~~ 109 (255)
T PRK11036 47 RVLDAGGGEGQTAIKLAEL-------------GHQVILCDLSAEMIQRAKQAAEAKGVSD----NMQFIHCAAQDIAQHL 109 (255)
T ss_pred EEEEeCCCchHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcCCcc----ceEEEEcCHHHHhhhc
Confidence 6899999999999988875 5689999999999999999988776553 7899999987764 45
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++..++.++.++|||||++++..+.
T Consensus 110 ~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 110 ETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred CCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEEC
Confidence 678999999999999999999999999999999999876544
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.7e-20 Score=122.57 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=92.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||.|.++..+++. +.+|+++|.++.+++.|+......++ .+.+.+...+++...
T Consensus 61 ~~vLDvGCGgG~Lse~mAr~-------------Ga~VtgiD~se~~I~~Ak~ha~e~gv------~i~y~~~~~edl~~~ 121 (243)
T COG2227 61 LRVLDVGCGGGILSEPLARL-------------GASVTGIDASEKPIEVAKLHALESGV------NIDYRQATVEDLASA 121 (243)
T ss_pred CeEEEecCCccHhhHHHHHC-------------CCeeEEecCChHHHHHHHHhhhhccc------cccchhhhHHHHHhc
Confidence 47999999999999999986 78999999999999999988877653 466777777777655
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|+|.-++.|.+++..++..+.+++||||.+++....+.
T Consensus 122 ~~~FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 122 GGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred CCCccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccC
Confidence 68999999999999999999999999999999999999776644
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.5e-19 Score=120.37 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=89.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.. ..+++++|+|+.++..++++..... ++.+...|+.+.+++
T Consensus 54 ~~VLDiGcG~G~~a~~la~~~------------~~~v~giD~s~~~~~~a~~~~~~~~-------~i~~~~~D~~~~~~~ 114 (263)
T PTZ00098 54 SKVLDIGSGLGGGCKYINEKY------------GAHVHGVDICEKMVNIAKLRNSDKN-------KIEFEANDILKKDFP 114 (263)
T ss_pred CEEEEEcCCCChhhHHHHhhc------------CCEEEEEECCHHHHHHHHHHcCcCC-------ceEEEECCcccCCCC
Confidence 369999999999988887642 4689999999999999998875422 799999999888888
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+++||+|++..++++++ ++..++.++.++|||||++++.++...
T Consensus 115 ~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 115 ENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred CCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 88999999988877775 788999999999999999999887543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.7e-19 Score=114.83 Aligned_cols=100 Identities=17% Similarity=0.068 Sum_probs=85.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....++. ++++...|+...+++
T Consensus 33 ~vLDiGcG~G~~a~~La~~-------------g~~V~gvD~S~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~- 93 (197)
T PRK11207 33 KTLDLGCGNGRNSLYLAAN-------------GFDVTAWDKNPMSIANLERIKAAENLD-----NLHTAVVDLNNLTFD- 93 (197)
T ss_pred cEEEECCCCCHHHHHHHHC-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----cceEEecChhhCCcC-
Confidence 6999999999999988875 568999999999999999988776653 688888898776654
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..++|+++ ++..++.++.++|+|||++++.+
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 94 GEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred CCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5799999999988775 57899999999999999976544
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-20 Score=110.27 Aligned_cols=97 Identities=23% Similarity=0.282 Sum_probs=65.7
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--CCC
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--IES 81 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~ 81 (131)
||+|||+|..+..+++..+ ..+++++|+|+.+++.+++++...... +......+..+.. ...
T Consensus 1 LdiGcG~G~~~~~l~~~~~-----------~~~~~~~D~s~~~l~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELP-----------DARYTGVDISPSMLERARERLAELGND-----NFERLRFDVLDLFDYDPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC------------EEEEEEEESSSSTTSTTCCCHHHCT--------EEEEE--SSS---CCC-
T ss_pred CEeCccChHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHhhhcCCc-----ceeEEEeecCChhhcccc
Confidence 7999999999999999864 789999999999999998888775522 3333333332221 122
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
++||+|++..++|+++++...+.++.+.|+|||++
T Consensus 65 ~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 58999999999999999999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-18 Score=118.97 Aligned_cols=106 Identities=25% Similarity=0.260 Sum_probs=93.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++... ...+++++|+++.+++.++++....+.. ++++...|+..+++++
T Consensus 80 ~VLDiG~G~G~~~~~~a~~~g----------~~~~v~gvD~s~~~l~~A~~~~~~~g~~-----~v~~~~~d~~~l~~~~ 144 (272)
T PRK11873 80 TVLDLGSGGGFDCFLAARRVG----------PTGKVIGVDMTPEMLAKARANARKAGYT-----NVEFRLGEIEALPVAD 144 (272)
T ss_pred EEEEeCCCCCHHHHHHHHHhC----------CCCEEEEECCCHHHHHHHHHHHHHcCCC-----CEEEEEcchhhCCCCC
Confidence 699999999998887777654 2468999999999999999988776553 7899999998888877
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++.++++.++....+.++.++|||||++++.++.
T Consensus 145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 89999999999999999999999999999999999997754
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.2e-19 Score=119.76 Aligned_cols=100 Identities=22% Similarity=0.326 Sum_probs=86.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+.+. +.+++++|+|+.+++.++++.. ...++..|+..+++++
T Consensus 45 ~vLDiGcG~G~~~~~l~~~-------------~~~v~~~D~s~~~l~~a~~~~~----------~~~~~~~d~~~~~~~~ 101 (251)
T PRK10258 45 HVLDAGCGPGWMSRYWRER-------------GSQVTALDLSPPMLAQARQKDA----------ADHYLAGDIESLPLAT 101 (251)
T ss_pred eEEEeeCCCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHhhCC----------CCCEEEcCcccCcCCC
Confidence 5899999999988877653 5689999999999999987642 3467888988888888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++..+++.+++...+.++.++|+|||.+++..+...
T Consensus 102 ~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 102 ATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred CcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 8999999999999999999999999999999999999876543
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=115.16 Aligned_cols=105 Identities=20% Similarity=0.191 Sum_probs=92.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+|++++..+++++...++.+ +++++..|....+.+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~-----------~~~v~gid~s~~~~~~a~~~~~~~gl~~----~i~~~~~d~~~~~~~- 65 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHP-----------HLQLHGYTISPEQAEVGRERIRALGLQG----RIRIFYRDSAKDPFP- 65 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHhcCCCc----ceEEEecccccCCCC-
Confidence 689999999999998888754 5689999999999999999988776664 789999998665543
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..+++++++....+.++.+.|+|||++++.++.
T Consensus 66 ~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 66 DTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred CCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 57999999999999999999999999999999999998764
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-18 Score=118.17 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.|++.++++ ++.++..|+..++ +.
T Consensus 32 ~vLDlGcG~G~~~~~l~~~~p-----------~~~v~gvD~s~~~~~~a~~~------------~~~~~~~d~~~~~-~~ 87 (255)
T PRK14103 32 RVVDLGCGPGNLTRYLARRWP-----------GAVIEALDSSPEMVAAARER------------GVDARTGDVRDWK-PK 87 (255)
T ss_pred EEEEEcCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHhc------------CCcEEEcChhhCC-CC
Confidence 699999999999998888754 56899999999999998642 5678888887764 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++.++|+++++...+.++.+.|||||++++..
T Consensus 88 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 88 PDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEc
Confidence 689999999999999999999999999999999998864
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=117.07 Aligned_cols=108 Identities=15% Similarity=0.193 Sum_probs=89.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.... +..+++++|+|+.|++.++++....+... +++++..|+.+.+++
T Consensus 59 ~vLDlGcGtG~~~~~l~~~~~~---------~~~~v~gvD~S~~ml~~A~~~~~~~~~~~----~v~~~~~d~~~~~~~- 124 (247)
T PRK15451 59 QVYDLGCSLGAATLSVRRNIHH---------DNCKIIAIDNSPAMIERCRRHIDAYKAPT----PVDVIEGDIRDIAIE- 124 (247)
T ss_pred EEEEEcccCCHHHHHHHHhcCC---------CCCeEEEEeCCHHHHHHHHHHHHhcCCCC----CeEEEeCChhhCCCC-
Confidence 6999999999998888774310 36799999999999999999988765443 799999998877653
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+|+|++++++|+++ +...++.++++.|+|||.+++.|....
T Consensus 125 -~~D~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~ 168 (247)
T PRK15451 125 -NASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSF 168 (247)
T ss_pred -CCCEEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 589999999999886 356889999999999999999885543
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=4e-18 Score=114.74 Aligned_cols=108 Identities=13% Similarity=0.122 Sum_probs=90.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.+. ++..+++++|+|+.|+..+++++....... +++++..|+...+++
T Consensus 56 ~iLDlGcG~G~~~~~l~~~~~---------~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~- 121 (239)
T TIGR00740 56 NVYDLGCSRGAATLSARRNIN---------QPNVKIIGIDNSQPMVERCRQHIAAYHSEI----PVEILCNDIRHVEIK- 121 (239)
T ss_pred EEEEecCCCCHHHHHHHHhcC---------CCCCeEEEEeCCHHHHHHHHHHHHhcCCCC----CeEEEECChhhCCCC-
Confidence 699999999999998888642 036789999999999999999987654332 789999999887654
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+|+|++.+++|+++ +...++.++.+.|+|||.+++.+....
T Consensus 122 -~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~ 165 (239)
T TIGR00740 122 -NASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRF 165 (239)
T ss_pred -CCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccC
Confidence 589999999999886 467899999999999999999886543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=119.19 Aligned_cols=103 Identities=26% Similarity=0.300 Sum_probs=90.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++..+ ..+++++|.|+++++.++++... .+++++..|+.+.+++
T Consensus 115 ~~VLDLGcGtG~~~l~La~~~~-----------~~~VtgVD~S~~mL~~A~~k~~~--------~~i~~i~gD~e~lp~~ 175 (340)
T PLN02490 115 LKVVDVGGGTGFTTLGIVKHVD-----------AKNVTILDQSPHQLAKAKQKEPL--------KECKIIEGDAEDLPFP 175 (340)
T ss_pred CEEEEEecCCcHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHhhhc--------cCCeEEeccHHhCCCC
Confidence 4699999999999988887654 46899999999999999887542 1688899999988888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|+++.+++++++....++++.+.|+|||++++.+..
T Consensus 176 ~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~ 217 (340)
T PLN02490 176 TDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPV 217 (340)
T ss_pred CCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEec
Confidence 889999999999999999999999999999999999887643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=103.48 Aligned_cols=98 Identities=22% Similarity=0.359 Sum_probs=78.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
|||+|||+|..+..+++.... . +..+++++|+|+++++.++++....+. ++++++.|+.+++...+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~-~-------~~~~~~gvD~s~~~l~~~~~~~~~~~~------~~~~~~~D~~~l~~~~~ 66 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA-G-------PSSRVIGVDISPEMLELAKKRFSEDGP------KVRFVQADARDLPFSDG 66 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-------------SEEEEEES-HHHHHHHHHHSHHTTT------TSEEEESCTTCHHHHSS
T ss_pred CEEeecCCcHHHHHHHHHhhh-c-------ccceEEEEECCHHHHHHHHHhchhcCC------ceEEEECCHhHCcccCC
Confidence 799999999999999988521 0 237999999999999999999876442 78999999999877778
Q ss_pred CeeEEEEccc-ccccc--CHHHHHHHHHHhccCCc
Q psy890 83 SYSAYTIAFG-IRNVT--RIDKALSEAYRVLKPGG 114 (131)
Q Consensus 83 ~~D~i~~~~~-l~~~~--~~~~~l~~~~~~L~p~G 114 (131)
+||+|++.+. +++++ +...++.++.++|+|||
T Consensus 67 ~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 67 KFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 9999999655 77776 56799999999999998
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.3e-18 Score=111.41 Aligned_cols=100 Identities=14% Similarity=0.026 Sum_probs=81.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++....+. ++.+...|....+++
T Consensus 33 ~vLDiGcG~G~~a~~la~~-------------g~~V~~iD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~- 92 (195)
T TIGR00477 33 KTLDLGCGQGRNSLYLSLA-------------GYDVRAWDHNPASIASVLDMKARENL------PLRTDAYDINAAALN- 92 (195)
T ss_pred cEEEeCCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHHhCC------CceeEeccchhcccc-
Confidence 6899999999999988874 56899999999999999888765543 356666776655543
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
++||+|++..++++++ +....+.++.++|+|||++++.++
T Consensus 93 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 93 EDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred CCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 5799999999998874 567899999999999999776654
|
Part of a tellurite-reducing operon tehA and tehB |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.5e-18 Score=123.22 Aligned_cols=104 Identities=18% Similarity=0.196 Sum_probs=90.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.. +.+++++|+|+.++..++++..... .++++...|+...+++.
T Consensus 269 ~vLDiGcG~G~~~~~la~~~------------~~~v~gvDiS~~~l~~A~~~~~~~~------~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 269 KVLDVGCGIGGGDFYMAENF------------DVHVVGIDLSVNMISFALERAIGRK------CSVEFEVADCTKKTYPD 330 (475)
T ss_pred EEEEEeccCCHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHhhcCC------CceEEEEcCcccCCCCC
Confidence 69999999999988887753 4589999999999999988765322 27899999998887777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++++..++.++++.|+|||++++.++..
T Consensus 331 ~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 372 (475)
T PLN02336 331 NSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCR 372 (475)
T ss_pred CCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEecc
Confidence 899999999999999999999999999999999999987654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-18 Score=114.22 Aligned_cols=103 Identities=25% Similarity=0.368 Sum_probs=90.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.++..++++... ++.++..|+.+.+++.
T Consensus 37 ~vLDlG~G~G~~~~~l~~~~~-----------~~~~~~~D~~~~~~~~~~~~~~~---------~~~~~~~d~~~~~~~~ 96 (240)
T TIGR02072 37 SVLDIGCGTGYLTRALLKRFP-----------QAEFIALDISAGMLAQAKTKLSE---------NVQFICGDAEKLPLED 96 (240)
T ss_pred eEEEECCCccHHHHHHHHhCC-----------CCcEEEEeChHHHHHHHHHhcCC---------CCeEEecchhhCCCCC
Confidence 699999999999998888754 56799999999999998877641 6788999998888777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..++++..++...+.++.+.|+|||.+++.++...
T Consensus 97 ~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~ 139 (240)
T TIGR02072 97 SSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPG 139 (240)
T ss_pred CceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 8999999999999999999999999999999999998775543
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=109.08 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=86.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..++...+ ..+++++|+++.+++.++++.+..+.. +++++..|..+.+.
T Consensus 47 ~~VLDiGcGtG~~al~la~~~~-----------~~~V~giD~s~~~l~~A~~~~~~~~l~-----~i~~~~~d~~~~~~- 109 (187)
T PRK00107 47 ERVLDVGSGAGFPGIPLAIARP-----------ELKVTLVDSLGKKIAFLREVAAELGLK-----NVTVVHGRAEEFGQ- 109 (187)
T ss_pred CeEEEEcCCCCHHHHHHHHHCC-----------CCeEEEEeCcHHHHHHHHHHHHHcCCC-----CEEEEeccHhhCCC-
Confidence 3699999999999998887643 679999999999999999999887754 69999999888765
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++.. +.++..++.++.+.|+|||++++....
T Consensus 110 ~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~ 147 (187)
T PRK00107 110 EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR 147 (187)
T ss_pred CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 67899999864 457788999999999999999987644
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-17 Score=112.16 Aligned_cols=111 Identities=43% Similarity=0.631 Sum_probs=95.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++..+ ...+++++|+++.+++.+++++....... ++.++..|+.+.+..
T Consensus 53 ~~vldiG~G~G~~~~~l~~~~~----------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~ 118 (239)
T PRK00216 53 DKVLDLACGTGDLAIALAKAVG----------KTGEVVGLDFSEGMLAVGREKLRDLGLSG----NVEFVQGDAEALPFP 118 (239)
T ss_pred CeEEEeCCCCCHHHHHHHHHcC----------CCCeEEEEeCCHHHHHHHHHhhccccccc----CeEEEecccccCCCC
Confidence 3689999999999999988753 24789999999999999999887644332 788999998887766
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++.+++++.++....+.++.+.|+|||++++.++..+.
T Consensus 119 ~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 119 DNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred CCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 678999999999999999999999999999999999998876554
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-18 Score=114.73 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=84.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++.. ++.++..|+..+. +.
T Consensus 34 ~vLDiGcG~G~~~~~la~~~~-----------~~~v~gvD~s~~~i~~a~~~~~----------~~~~~~~d~~~~~-~~ 91 (258)
T PRK01683 34 YVVDLGCGPGNSTELLVERWP-----------AARITGIDSSPAMLAEARSRLP----------DCQFVEADIASWQ-PP 91 (258)
T ss_pred EEEEEcccCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHhCC----------CCeEEECchhccC-CC
Confidence 699999999999998888754 5789999999999999987742 6788888887654 34
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|+++.+++++++...++.++.+.|+|||.+++.
T Consensus 92 ~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~ 129 (258)
T PRK01683 92 QALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQ 129 (258)
T ss_pred CCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEE
Confidence 68999999999999999999999999999999999875
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.2e-18 Score=113.68 Aligned_cols=100 Identities=18% Similarity=0.258 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||||..+..+++.. +.+++++|+|++|++.++++. .++.+|+..+|+++
T Consensus 54 ~VLDlGcGtG~~~~~l~~~~------------~~~v~gvD~S~~Ml~~a~~~~-------------~~~~~d~~~lp~~d 108 (226)
T PRK05785 54 KVLDVAAGKGELSYHFKKVF------------KYYVVALDYAENMLKMNLVAD-------------DKVVGSFEALPFRD 108 (226)
T ss_pred eEEEEcCCCCHHHHHHHHhc------------CCEEEEECCCHHHHHHHHhcc-------------ceEEechhhCCCCC
Confidence 69999999999998887753 358999999999999987531 24577888889999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCccc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~ 128 (131)
++||+|++.+++++++++...+.++.|+|||. +.+++++.+....
T Consensus 109 ~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~--~~ile~~~p~~~~ 153 (226)
T PRK05785 109 KSFDVVMSSFALHASDNIEKVIAEFTRVSRKQ--VGFIAMGKPDNVI 153 (226)
T ss_pred CCEEEEEecChhhccCCHHHHHHHHHHHhcCc--eEEEEeCCCCcHH
Confidence 99999999999999999999999999999993 4456777766543
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-17 Score=116.27 Aligned_cols=102 Identities=20% Similarity=0.084 Sum_probs=84.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++... ...|+|+|+|+.++.+++......... .++.+...|+.+++. .
T Consensus 125 ~VLDIGCG~G~~~~~la~~g------------~~~V~GiD~S~~~l~q~~a~~~~~~~~----~~i~~~~~d~e~lp~-~ 187 (322)
T PRK15068 125 TVLDVGCGNGYHMWRMLGAG------------AKLVVGIDPSQLFLCQFEAVRKLLGND----QRAHLLPLGIEQLPA-L 187 (322)
T ss_pred EEEEeccCCcHHHHHHHHcC------------CCEEEEEcCCHHHHHHHHHHHHhcCCC----CCeEEEeCCHHHCCC-c
Confidence 69999999999999887762 346999999999987654433222111 278999999998887 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..+++|..++...+.++++.|+|||.+++..
T Consensus 188 ~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 188 KAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred CCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEE
Confidence 789999999999999999999999999999999998754
|
|
| >KOG1270|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=114.12 Aligned_cols=105 Identities=20% Similarity=0.220 Sum_probs=86.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCC----ceeEEeccccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNP----RLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~d~~~ 76 (131)
|.|||+|||+|-++..+++. +..|+|+|.++.+++.|++......... . ++.+...+.+.
T Consensus 91 ~~ilDvGCGgGLLSepLArl-------------ga~V~GID~s~~~V~vA~~h~~~dP~~~---~~~~y~l~~~~~~~E~ 154 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL-------------GAQVTGIDASDDMVEVANEHKKMDPVLE---GAIAYRLEYEDTDVEG 154 (282)
T ss_pred ceEEEeccCccccchhhHhh-------------CCeeEeecccHHHHHHHHHhhhcCchhc---cccceeeehhhcchhh
Confidence 57999999999999999997 7899999999999999998843322211 1 24555666665
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.. +.||.|+|+-+++|..++..++..+.+.|||||.+++....+.
T Consensus 155 ~~---~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 155 LT---GKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred cc---cccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 43 4599999999999999999999999999999999999876654
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.8e-17 Score=109.36 Aligned_cols=106 Identities=29% Similarity=0.389 Sum_probs=91.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++... +..+++++|+++.++..++++..... .++.+...|+...++.
T Consensus 21 ~~vLdiG~G~G~~~~~~a~~~~----------~~~~v~~~d~~~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~ 84 (241)
T PRK08317 21 DRVLDVGCGPGNDARELARRVG----------PEGRVVGIDRSEAMLALAKERAAGLG------PNVEFVRGDADGLPFP 84 (241)
T ss_pred CEEEEeCCCCCHHHHHHHHhcC----------CCcEEEEEeCCHHHHHHHHHHhhCCC------CceEEEecccccCCCC
Confidence 3689999999999999988763 25789999999999999988733221 2788999998887777
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++...+.++.+.|+|||.+++.+..
T Consensus 85 ~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 85 DGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred CCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecC
Confidence 789999999999999999999999999999999999987753
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=106.29 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=81.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..++...+ ..+++++|.|+.+++.++++.+..+.. +++++..|+.+.. .
T Consensus 44 ~~vLDiGcGtG~~s~~la~~~~-----------~~~V~~iD~s~~~~~~a~~~~~~~~~~-----~i~~i~~d~~~~~-~ 106 (181)
T TIGR00138 44 KKVIDIGSGAGFPGIPLAIARP-----------ELKLTLLESNHKKVAFLREVKAELGLN-----NVEIVNGRAEDFQ-H 106 (181)
T ss_pred CeEEEecCCCCccHHHHHHHCC-----------CCeEEEEeCcHHHHHHHHHHHHHhCCC-----CeEEEecchhhcc-c
Confidence 3689999999999998876533 578999999999999999888776653 7999999988763 3
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|++.. +.+....++.+.++|+|||++++..
T Consensus 107 ~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 107 EEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred cCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEEEc
Confidence 56899999865 3456677888999999999998764
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.8e-17 Score=107.98 Aligned_cols=108 Identities=43% Similarity=0.630 Sum_probs=92.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++..+ ...+++++|+++.++..++++... . .++.+...|+.+.++.
T Consensus 41 ~~vldiG~G~G~~~~~~~~~~~----------~~~~~~~iD~~~~~~~~~~~~~~~---~----~~i~~~~~d~~~~~~~ 103 (223)
T TIGR01934 41 QKVLDVACGTGDLAIELAKSAP----------DRGKVTGVDFSSEMLEVAKKKSEL---P----LNIEFIQADAEALPFE 103 (223)
T ss_pred CeEEEeCCCCChhHHHHHHhcC----------CCceEEEEECCHHHHHHHHHHhcc---C----CCceEEecchhcCCCC
Confidence 3689999999999998888754 126899999999999999888751 1 2788999998887776
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++++++++.+++..+++++.+.|+|||++++.+...+.
T Consensus 104 ~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 104 DNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred CCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 778999999999999999999999999999999999998876544
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.8e-17 Score=110.86 Aligned_cols=108 Identities=17% Similarity=0.160 Sum_probs=95.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|++||||||.|.+++.+++.. +.+|+|+++|+++...+++++...++++ ++++...|..++.
T Consensus 74 ~~lLDiGCGWG~l~~~aA~~y------------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~----~v~v~l~d~rd~~-- 135 (283)
T COG2230 74 MTLLDIGCGWGGLAIYAAEEY------------GVTVVGVTLSEEQLAYAEKRIAARGLED----NVEVRLQDYRDFE-- 135 (283)
T ss_pred CEEEEeCCChhHHHHHHHHHc------------CCEEEEeeCCHHHHHHHHHHHHHcCCCc----ccEEEeccccccc--
Confidence 689999999999999999985 4899999999999999999999998885 8999999988765
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCCcc
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~ 127 (131)
+.||.|++..++.++. +...++..+.+.|+|||++++-..+.+..+
T Consensus 136 -e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~ 183 (283)
T COG2230 136 -EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQE 183 (283)
T ss_pred -cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcc
Confidence 3399999999999986 489999999999999999998777766543
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=112.75 Aligned_cols=99 Identities=18% Similarity=0.103 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+|+++|+|+.+++.++++....++ ++++...|+..... .
T Consensus 123 ~vLDlGcG~G~~~~~la~~-------------g~~V~avD~s~~ai~~~~~~~~~~~l------~v~~~~~D~~~~~~-~ 182 (287)
T PRK12335 123 KALDLGCGQGRNSLYLALL-------------GFDVTAVDINQQSLENLQEIAEKENL------NIRTGLYDINSASI-Q 182 (287)
T ss_pred CEEEeCCCCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEechhcccc-c
Confidence 5899999999999988774 56899999999999999988876553 57777778766544 5
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..++++++ +....+.++.++|+|||+++++.
T Consensus 183 ~~fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 183 EEYDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred CCccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 7899999999998875 56789999999999999977654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=105.65 Aligned_cols=95 Identities=20% Similarity=0.219 Sum_probs=77.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+.+. +.+++++|+++.++.. . +......+......+
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~-------------~~~~~g~D~~~~~~~~--------~-------~~~~~~~~~~~~~~~ 75 (161)
T PF13489_consen 24 KRVLDIGCGTGSFLRALAKR-------------GFEVTGVDISPQMIEK--------R-------NVVFDNFDAQDPPFP 75 (161)
T ss_dssp SEEEEESSTTSHHHHHHHHT-------------TSEEEEEESSHHHHHH--------T-------TSEEEEEECHTHHCH
T ss_pred CEEEEEcCCCCHHHHHHHHh-------------CCEEEEEECCHHHHhh--------h-------hhhhhhhhhhhhhcc
Confidence 46999999999998888554 4599999999999888 1 333333333333456
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++..++++++++..++.++.++|||||++++.++..
T Consensus 76 ~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 76 DGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp SSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 6899999999999999999999999999999999999988765
|
... |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-17 Score=107.71 Aligned_cols=103 Identities=17% Similarity=0.080 Sum_probs=85.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~-- 78 (131)
.|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++....+.. ++.++..|+ ..++
T Consensus 43 ~VLDiGcGtG~~~~~la~~~p-----------~~~v~gVD~s~~~i~~a~~~~~~~~~~-----~v~~~~~d~~~~l~~~ 106 (202)
T PRK00121 43 IHLEIGFGKGEFLVEMAKANP-----------DINFIGIEVHEPGVGKALKKIEEEGLT-----NLRLLCGDAVEVLLDM 106 (202)
T ss_pred eEEEEccCCCHHHHHHHHHCC-----------CccEEEEEechHHHHHHHHHHHHcCCC-----CEEEEecCHHHHHHHH
Confidence 699999999999999988754 568999999999999999988766543 799999998 6655
Q ss_pred CCCCCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++.++||+|++++...+.. ....++.++.++|+|||++++..
T Consensus 107 ~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 107 FPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred cCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5667899999976554332 14678999999999999998864
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=120.53 Aligned_cols=106 Identities=20% Similarity=0.205 Sum_probs=88.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++..+ ..+++++|+|+.|++.++++....+ .++.++.+|..+++
T Consensus 420 ~rVLDIGCGTG~ls~~LA~~~P-----------~~kVtGIDIS~~MLe~Ararl~~~g------~~ie~I~gDa~dLp~~ 482 (677)
T PRK06922 420 DTIVDVGAGGGVMLDMIEEETE-----------DKRIYGIDISENVIDTLKKKKQNEG------RSWNVIKGDAINLSSS 482 (677)
T ss_pred CEEEEeCCCCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHhhhcC------CCeEEEEcchHhCccc
Confidence 3689999999999888887654 6799999999999999998765433 16788888987776
Q ss_pred CCCCCeeEEEEccccccc-------------cCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRNV-------------TRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~-------------~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+++++||+|+++..+|++ .+...++.++.++|||||++++.+...
T Consensus 483 fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 483 FEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred cCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 677899999999888864 246789999999999999999988543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.73 E-value=6e-17 Score=112.40 Aligned_cols=103 Identities=16% Similarity=-0.041 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++.. ....++|+|+|+.|+.++...-...... .++.+...++.+++..
T Consensus 124 ~VLDvGCG~G~~~~~~~~~------------g~~~v~GiDpS~~ml~q~~~~~~~~~~~----~~v~~~~~~ie~lp~~- 186 (314)
T TIGR00452 124 TILDVGCGSGYHMWRMLGH------------GAKSLVGIDPTVLFLCQFEAVRKLLDND----KRAILEPLGIEQLHEL- 186 (314)
T ss_pred EEEEeccCCcHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHHHHHHhccC----CCeEEEECCHHHCCCC-
Confidence 6899999999998877665 1347999999999988754322211111 1678888888887643
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+||+|+++.+++|.+++...+.++++.|+|||.+++.+.
T Consensus 187 ~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 187 YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 4799999999999999999999999999999999987543
|
Known examples to date are restricted to the proteobacteria. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-16 Score=108.92 Aligned_cols=103 Identities=18% Similarity=0.167 Sum_probs=84.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||.|..+..+++.. +.+|+++.+|+++...+++++...++.+ ++++...|..+++.
T Consensus 64 ~~vLDiGcGwG~~~~~~a~~~------------g~~v~gitlS~~Q~~~a~~~~~~~gl~~----~v~v~~~D~~~~~~- 126 (273)
T PF02353_consen 64 DRVLDIGCGWGGLAIYAAERY------------GCHVTGITLSEEQAEYARERIREAGLED----RVEVRLQDYRDLPG- 126 (273)
T ss_dssp -EEEEES-TTSHHHHHHHHHH--------------EEEEEES-HHHHHHHHHHHHCSTSSS----TEEEEES-GGG----
T ss_pred CEEEEeCCCccHHHHHHHHHc------------CcEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEEeeccccCC-
Confidence 479999999999999999986 4789999999999999999999988875 89999999887653
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+||.|++..++.++ .+...++.++.++|+|||++++-..+
T Consensus 127 --~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~ 168 (273)
T PF02353_consen 127 --KFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTIT 168 (273)
T ss_dssp --S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred --CCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 89999999999988 47889999999999999999875444
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=101.58 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++++..++. +++++..|..+. .+.
T Consensus 34 ~vLDlG~G~G~i~~~la~~~~-----------~~~v~~vDi~~~a~~~a~~n~~~n~~~-----~v~~~~~d~~~~-~~~ 96 (170)
T PF05175_consen 34 RVLDLGCGSGVISLALAKRGP-----------DAKVTAVDINPDALELAKRNAERNGLE-----NVEVVQSDLFEA-LPD 96 (170)
T ss_dssp EEEEETSTTSHHHHHHHHTST-----------CEEEEEEESBHHHHHHHHHHHHHTTCT-----TEEEEESSTTTT-CCT
T ss_pred eEEEecCChHHHHHHHHHhCC-----------CCEEEEEcCCHHHHHHHHHHHHhcCcc-----cccccccccccc-ccc
Confidence 689999999999999988754 567999999999999999999988765 488888887653 346
Q ss_pred CCeeEEEEccccccccC-----HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++-.++.-.+ ...++.+..++|+|||.++++-
T Consensus 97 ~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 97 GKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cceeEEEEccchhcccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 88999999877765543 5788999999999999997754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-17 Score=106.00 Aligned_cols=95 Identities=18% Similarity=0.116 Sum_probs=86.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|.|+|||+|..+..+++.++ ...++|+|.|++|++.|+++.. +++|..+|+..+. +.
T Consensus 33 ~v~DLGCGpGnsTelL~~RwP-----------~A~i~GiDsS~~Mla~Aa~rlp----------~~~f~~aDl~~w~-p~ 90 (257)
T COG4106 33 RVVDLGCGPGNSTELLARRWP-----------DAVITGIDSSPAMLAKAAQRLP----------DATFEEADLRTWK-PE 90 (257)
T ss_pred eeeecCCCCCHHHHHHHHhCC-----------CCeEeeccCCHHHHHHHHHhCC----------CCceecccHhhcC-CC
Confidence 589999999999999999986 7899999999999999987763 7889999998874 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.|+++++.+++|+++-...+.++...|.|||.+-+
T Consensus 91 ~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAV 127 (257)
T COG4106 91 QPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAV 127 (257)
T ss_pred CccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEE
Confidence 6799999999999999999999999999999999865
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=101.11 Aligned_cols=101 Identities=18% Similarity=0.122 Sum_probs=81.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|||.|+.+..+++. +..|+++|.|+..++.+++..+..++ .++....|++...++
T Consensus 33 ~~LDlgcG~GRNalyLA~~-------------G~~VtAvD~s~~al~~l~~~a~~~~l------~i~~~~~Dl~~~~~~- 92 (192)
T PF03848_consen 33 KALDLGCGEGRNALYLASQ-------------GFDVTAVDISPVALEKLQRLAEEEGL------DIRTRVADLNDFDFP- 92 (192)
T ss_dssp EEEEES-TTSHHHHHHHHT-------------T-EEEEEESSHHHHHHHHHHHHHTT-------TEEEEE-BGCCBS-T-
T ss_pred cEEEcCCCCcHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHhhcCc------eeEEEEecchhcccc-
Confidence 5899999999999999996 78999999999999999887766554 588889999887765
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.||+|++..++++++ .....+..+.+.++|||++++..+.
T Consensus 93 ~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~ 135 (192)
T PF03848_consen 93 EEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFM 135 (192)
T ss_dssp TTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEec
Confidence 6799999987777765 5678899999999999998886543
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-16 Score=101.23 Aligned_cols=100 Identities=16% Similarity=0.191 Sum_probs=80.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+||+|||.|.++..|+.. +.+++++|+|+..++.++++..... +++|...++.+. .+.
T Consensus 46 ~alEvGCs~G~lT~~LA~r-------------Cd~LlavDis~~Al~~Ar~Rl~~~~-------~V~~~~~dvp~~-~P~ 104 (201)
T PF05401_consen 46 RALEVGCSIGVLTERLAPR-------------CDRLLAVDISPRALARARERLAGLP-------HVEWIQADVPEF-WPE 104 (201)
T ss_dssp EEEEE--TTSHHHHHHGGG-------------EEEEEEEES-HHHHHHHHHHTTT-S-------SEEEEES-TTT----S
T ss_pred eeEecCCCccHHHHHHHHh-------------hCceEEEeCCHHHHHHHHHhcCCCC-------CeEEEECcCCCC-CCC
Confidence 5799999999999999887 5689999999999999999998754 899999998764 467
Q ss_pred CCeeEEEEccccccccC---HHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.||+|+++-+++++.+ +..++..+...|+|||.+++....
T Consensus 105 ~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 105 GRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp S-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred CCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 89999999999999964 567899999999999999997654
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=102.91 Aligned_cols=98 Identities=15% Similarity=0.073 Sum_probs=80.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.++ ...+++++|+++++++.+++++...+... +++++..|..+.....
T Consensus 75 ~VLDiG~GsG~~~~~la~~~~----------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~----~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 75 KILEVGTGSGYQAAVCAEAIE----------RRGKVYTVEIVKELAIYAAQNIERLGYWG----VVEVYHGDGKRGLEKH 140 (205)
T ss_pred EEEEECcCccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCCC----cEEEEECCcccCCccC
Confidence 699999999999988888764 24689999999999999999988766543 6899999987654345
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|++...+.+++ .++.+.|+|||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP------SALVRQLKDGGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh------HHHHHhcCcCcEEEEE
Confidence 6899999988776554 4678899999999774
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-16 Score=108.91 Aligned_cols=112 Identities=16% Similarity=0.088 Sum_probs=82.1
Q ss_pred ceeeeecccchhhH----HHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh----ccCC-------------
Q psy890 2 YILFYLVFPGDIAF----RFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD----LFKV------------- 60 (131)
Q Consensus 2 ~iLdig~G~G~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~----~~~~------------- 60 (131)
+|+|+|||+|..+. .+++..+... ....+++++|+|+.+++.|++..-. ...+
T Consensus 102 ri~d~GCgtGee~YslA~~l~e~~~~~~------~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~ 175 (264)
T smart00138 102 RIWSAGCSTGEEPYSLAMLLAETLPKAR------EPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVED 175 (264)
T ss_pred EEEeccccCChHHHHHHHHHHHHhhhcC------CCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCC
Confidence 69999999997543 3444332100 0246899999999999999886421 0000
Q ss_pred -----CCCCCceeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 61 -----PVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 61 -----~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.-..++.|...|+.+.+.+.++||+|+|.+++++++ +..+++.++.+.|+|||++++.
T Consensus 176 ~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 176 KYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred eEEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 0001268899999988776678899999999999996 4568999999999999999874
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=114.85 Aligned_cols=104 Identities=15% Similarity=0.144 Sum_probs=85.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~ 79 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++..... +++.++..|+.. .++
T Consensus 40 ~vLDlGcG~G~~~~~la~~-------------~~~v~giD~s~~~l~~a~~~~~~~-------~~i~~~~~d~~~~~~~~ 99 (475)
T PLN02336 40 SVLELGAGIGRFTGELAKK-------------AGQVIALDFIESVIKKNESINGHY-------KNVKFMCADVTSPDLNI 99 (475)
T ss_pred EEEEeCCCcCHHHHHHHhh-------------CCEEEEEeCCHHHHHHHHHHhccC-------CceEEEEecccccccCC
Confidence 6899999999999998876 458999999999998876533221 178899999863 456
Q ss_pred CCCCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 ESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+.++||+|++.++++++++ ...++.++.+.|+|||++++.|.....
T Consensus 100 ~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~ 147 (475)
T PLN02336 100 SDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQ 147 (475)
T ss_pred CCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCC
Confidence 7789999999999999876 578999999999999999998765443
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-16 Score=108.13 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=88.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|||+|.++..+++..+ ..+++++|. +.+++.++++....+..+ +++++..|+.+.+++
T Consensus 152 ~vlDiG~G~G~~~~~~~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~gl~~----rv~~~~~d~~~~~~~- 214 (306)
T TIGR02716 152 KMIDVGGGIGDISAAMLKHFP-----------ELDSTILNL-PGAIDLVNENAAEKGVAD----RMRGIAVDIYKESYP- 214 (306)
T ss_pred EEEEeCCchhHHHHHHHHHCC-----------CCEEEEEec-HHHHHHHHHHHHhCCccc----eEEEEecCccCCCCC-
Confidence 689999999999999999865 678999997 789999999988877664 899999998765544
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+|+|++.+++|++++. ..+++++++.|+|||++++.|+..
T Consensus 215 -~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~ 257 (306)
T TIGR02716 215 -EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVI 257 (306)
T ss_pred -CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEecc
Confidence 36999999999988643 578999999999999999998743
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.5e-16 Score=102.47 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=81.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+.+..+ ..+++++|+|+++++.++++.+ ++.+..+|+.+ +++.
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~~-----------~~~v~giDiS~~~l~~A~~~~~----------~~~~~~~d~~~-~~~~ 103 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLLP-----------FKHIYGVEINEYAVEKAKAYLP----------NINIIQGSLFD-PFKD 103 (204)
T ss_pred cEEEEecCCCHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHhhCC----------CCcEEEeeccC-CCCC
Confidence 699999999999999887654 5789999999999999987642 56677788777 7778
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..++++++ +..+.+.++.+.+ ++++++.++..+
T Consensus 104 ~sfD~V~~~~vL~hl~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 104 NFFDLVLTKGVLIHINPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred CCEEEEEECChhhhCCHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 8999999999998885 4578888888887 568888776543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=3.4e-16 Score=102.38 Aligned_cols=103 Identities=19% Similarity=0.108 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+||+|||+|.++..+++..+ ...++++|+++.++..++++....+.. +++++..|+.+.+
T Consensus 19 ~ilDiGcG~G~~~~~la~~~p-----------~~~v~gvD~~~~~l~~a~~~~~~~~l~-----ni~~i~~d~~~~~~~~ 82 (194)
T TIGR00091 19 LHLEIGCGKGRFLIDMAKQNP-----------DKNFLGIEIHTPIVLAANNKANKLGLK-----NLHVLCGDANELLDKF 82 (194)
T ss_pred eEEEeCCCccHHHHHHHHhCC-----------CCCEEEEEeeHHHHHHHHHHHHHhCCC-----CEEEEccCHHHHHHhh
Confidence 589999999999999988754 678999999999999999988776654 8999999987643
Q ss_pred CCCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++.+++|.|++++...|.... ..++.++.+.|||||.+++..
T Consensus 83 ~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 83 FPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 445689999998765554322 578999999999999998754
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-15 Score=92.96 Aligned_cols=100 Identities=21% Similarity=0.165 Sum_probs=80.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~ 79 (131)
.++||+|||+|..+..+++..+ ..+++++|+++.+++.++++....+.. ++.++..|... .+.
T Consensus 21 ~~vldlG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 84 (124)
T TIGR02469 21 DVLWDIGAGSGSITIEAARLVP-----------NGRVYAIERNPEALRLIERNARRFGVS-----NIVIVEGDAPEALED 84 (124)
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-----------CceEEEEcCCHHHHHHHHHHHHHhCCC-----ceEEEeccccccChh
Confidence 3689999999999999988764 578999999999999999988776543 67888787654 222
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..++||.|++..... ...+++..+.+.|+|||++++.
T Consensus 85 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~ 121 (124)
T TIGR02469 85 SLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLN 121 (124)
T ss_pred hcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEE
Confidence 346899999976543 4468899999999999999874
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.3e-16 Score=105.35 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHH-hhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRF-LNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|+|||||.|-++..+ ++... +..+++++|.++++++.|++.+.. .++.+ +++|...|+.+...
T Consensus 126 ~VldIGcGpgpltaiilaa~~~----------p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~----rV~F~~~Da~~~~~ 191 (296)
T PLN03075 126 KVAFVGSGPLPLTSIVLAKHHL----------PTTSFHNFDIDPSANDVARRLVSSDPDLSK----RMFFHTADVMDVTE 191 (296)
T ss_pred EEEEECCCCcHHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHhhhccCccC----CcEEEECchhhccc
Confidence 5899999988654444 33322 367999999999999999999854 55553 89999999887543
Q ss_pred CCCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+.||+|++. +++++ ++..+.+.++.+.|+|||++++-.
T Consensus 192 ~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 SLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred ccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 34689999999 77777 688999999999999999998753
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-16 Score=107.28 Aligned_cols=97 Identities=19% Similarity=0.220 Sum_probs=78.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+.. ....++++|+|+.++..+.++. . ++.+..+|..++|+++
T Consensus 88 ~vLDiGcG~G~~~~~l~~~~~~~--------~~~~v~giD~s~~~l~~A~~~~---~-------~~~~~~~d~~~lp~~~ 149 (272)
T PRK11088 88 ALLDIGCGEGYYTHALADALPEI--------TTMQLFGLDISKVAIKYAAKRY---P-------QVTFCVASSHRLPFAD 149 (272)
T ss_pred eEEEECCcCCHHHHHHHHhcccc--------cCCeEEEECCCHHHHHHHHHhC---C-------CCeEEEeecccCCCcC
Confidence 58999999999999988765410 1247999999999999997653 1 6888999999888888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++.+.- ..+.++.++|||||+++++..+.
T Consensus 150 ~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 150 QSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred CceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCC
Confidence 899999986541 23578999999999999876544
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-16 Score=103.50 Aligned_cols=106 Identities=15% Similarity=0.162 Sum_probs=81.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++...... ...+++++|+|++|++.++++.... ++++...+...++..+
T Consensus 63 ~iLDlGcG~G~~~~~L~~~~~~~g-------~~~~v~gvD~s~~~l~~a~~~~~~~--------~~~~~~~~~~~l~~~~ 127 (232)
T PRK06202 63 TLLDIGCGGGDLAIDLARWARRDG-------LRLEVTAIDPDPRAVAFARANPRRP--------GVTFRQAVSDELVAEG 127 (232)
T ss_pred EEEEeccCCCHHHHHHHHHHHhCC-------CCcEEEEEcCCHHHHHHHHhccccC--------CCeEEEEecccccccC
Confidence 699999999999988877543110 2458999999999999998875432 4556666655555566
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++++++|++++. ..++.++.+.++ |.+++.++.++
T Consensus 128 ~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 128 ERFDVVTSNHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCccEEEECCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 789999999999999874 578999999988 66667776655
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-15 Score=100.92 Aligned_cols=99 Identities=13% Similarity=0.046 Sum_probs=80.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++... ...+++++|+++++++.+++++...+.. +++++..|.......
T Consensus 78 ~~VLdIG~GsG~~t~~la~~~~----------~~~~V~~vE~~~~~~~~a~~~l~~~g~~-----~v~~~~gd~~~~~~~ 142 (212)
T PRK13942 78 MKVLEIGTGSGYHAAVVAEIVG----------KSGKVVTIERIPELAEKAKKTLKKLGYD-----NVEVIVGDGTLGYEE 142 (212)
T ss_pred CEEEEECCcccHHHHHHHHhcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEECCcccCCCc
Confidence 3699999999999988888754 3468999999999999999999877653 799999998765445
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||+|++.......+ ..+.+.|+|||++++..
T Consensus 143 ~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 143 NAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 57899999977654432 45677899999987753
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=99.67 Aligned_cols=104 Identities=16% Similarity=0.201 Sum_probs=87.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++. ..+++++|.++.++..+++++...... ++.+...|+.+.+..
T Consensus 47 ~~vLdlG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~~~ 108 (224)
T TIGR01983 47 LRVLDVGCGGGLLSEPLARL-------------GANVTGIDASEENIEVAKLHAKKDPLL-----KIEYRCTSVEDLAEK 108 (224)
T ss_pred CeEEEECCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEeCCHHHhhcC
Confidence 36899999999998877664 346999999999999999888765422 578888887776543
Q ss_pred -CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 -SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++...+++..++...+.++.+.|+|||++++....
T Consensus 109 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 109 GAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred CCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecC
Confidence 368999999999999999999999999999999999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.4e-15 Score=98.12 Aligned_cols=97 Identities=14% Similarity=0.036 Sum_probs=78.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ...+++++|+++++++.+++++...+.. +++++..|........
T Consensus 80 ~VLDiG~GsG~~a~~la~~~~----------~~g~V~~vD~~~~~~~~A~~~~~~~g~~-----~v~~~~~d~~~~~~~~ 144 (215)
T TIGR00080 80 KVLEIGTGSGYQAAVLAEIVG----------RDGLVVSIERIPELAEKAERRLRKLGLD-----NVIVIVGDGTQGWEPL 144 (215)
T ss_pred EEEEECCCccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHCCCC-----CeEEEECCcccCCccc
Confidence 689999999999998888754 2467999999999999999999887754 7999999987654344
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|++.....+.+ ..+.+.|+|||++++.
T Consensus 145 ~~fD~Ii~~~~~~~~~------~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 145 APYDRIYVTAAGPKIP------EALIDQLKEGGILVMP 176 (215)
T ss_pred CCCCEEEEcCCccccc------HHHHHhcCcCcEEEEE
Confidence 6899999876654433 4577889999998875
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.9e-15 Score=105.41 Aligned_cols=103 Identities=18% Similarity=0.131 Sum_probs=87.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
.+||||||+|..+..+++..+ ...++|+|+++.++..+.++....+.. ++.++.+|+..+ .+
T Consensus 125 ~vLEIGcGsG~~ll~lA~~~P-----------~~~~iGIEI~~~~i~~a~~ka~~~gL~-----NV~~i~~DA~~ll~~~ 188 (390)
T PRK14121 125 ILIEIGFGSGRHLLYQAKNNP-----------NKLFIGIEIHTPSIEQVLKQIELLNLK-----NLLIINYDARLLLELL 188 (390)
T ss_pred eEEEEcCcccHHHHHHHHhCC-----------CCCEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHhhhhC
Confidence 589999999999999999864 678999999999999999998877665 899999998764 36
Q ss_pred CCCCeeEEEEccccccccCH------HHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRI------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+++++|.|++++...|...+ ..++.++.++|+|||.+.+..
T Consensus 189 ~~~s~D~I~lnFPdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 189 PSNSVEKIFVHFPVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCceeEEEEeCCCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 77899999998776665443 578999999999999998853
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-15 Score=94.69 Aligned_cols=102 Identities=19% Similarity=0.111 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+. +++++..|..+.. .
T Consensus 22 ~vLdlG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~--~ 80 (179)
T TIGR00537 22 DVLEIGAGTGLVAIRLKGK-------------GKCILTTDINPFAVKELRENAKLNNV------GLDVVMTDLFKGV--R 80 (179)
T ss_pred eEEEeCCChhHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCC------ceEEEEccccccc--C
Confidence 5899999999999888775 33899999999999999999876542 5788888876543 3
Q ss_pred CCeeEEEEccccccccC---------------------HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTR---------------------IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~---------------------~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++..++..++ ...++.++.++|+|||.+++++....
T Consensus 81 ~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 81 GKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 58999999876654432 35679999999999999998876554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=96.37 Aligned_cols=87 Identities=31% Similarity=0.500 Sum_probs=74.1
Q ss_pred EEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 38 TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 38 ~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+|+|+|++|++.|+++.+...... ..+++++.+|+.++++++++||+|++.+++++++++...+.+++++|||||.++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~--~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSC--YKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccC--CCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEE
Confidence 489999999999987765322100 026899999999999888899999999999999999999999999999999999
Q ss_pred EEeccCCCc
Q psy890 118 CLEFSHVNN 126 (131)
Q Consensus 118 ~~~~~~~~~ 126 (131)
+.|++.+..
T Consensus 79 i~d~~~~~~ 87 (160)
T PLN02232 79 ILDFNKSNQ 87 (160)
T ss_pred EEECCCCCh
Confidence 999987654
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=104.16 Aligned_cols=100 Identities=12% Similarity=0.043 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++++..+. ..+++..|.... ..
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p-----------~~~v~~vDis~~Al~~A~~nl~~n~l------~~~~~~~D~~~~--~~ 259 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSP-----------KIRLTLSDVSAAALESSRATLAANGL------EGEVFASNVFSD--IK 259 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCC------CCEEEEcccccc--cC
Confidence 589999999999999988754 57899999999999999999887653 345666665442 24
Q ss_pred CCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++..+|+. .....++.++.++|+|||.++++.
T Consensus 260 ~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 260 GRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 689999999888763 245788999999999999998865
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-15 Score=98.61 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.|||+|||+|..+..+++. ..+++++|+++.++..+++++..... ++.+...+..+.+ ..
T Consensus 51 ~vLdiG~G~G~~~~~l~~~-------------~~~v~~iD~s~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~ 111 (233)
T PRK05134 51 RVLDVGCGGGILSESMARL-------------GADVTGIDASEENIEVARLHALESGL------KIDYRQTTAEELAAEH 111 (233)
T ss_pred eEEEeCCCCCHHHHHHHHc-------------CCeEEEEcCCHHHHHHHHHHHHHcCC------ceEEEecCHHHhhhhc
Confidence 6899999999998877664 45799999999999999988765432 4677777776654 33
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++.++....+..+.+.|+|||++++..+.
T Consensus 112 ~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 112 PGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred CCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 478999999999999999999999999999999999887654
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.4e-15 Score=103.90 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|.|+.+++.++++++...... ..++++...|.... ...
T Consensus 231 ~VLDLGCGtGvi~i~la~~~P-----------~~~V~~vD~S~~Av~~A~~N~~~n~~~~--~~~v~~~~~D~l~~-~~~ 296 (378)
T PRK15001 231 EIVDLGCGNGVIGLTLLDKNP-----------QAKVVFVDESPMAVASSRLNVETNMPEA--LDRCEFMINNALSG-VEP 296 (378)
T ss_pred eEEEEeccccHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCccc--CceEEEEEcccccc-CCC
Confidence 599999999999999988754 6799999999999999999987654220 01578887776432 334
Q ss_pred CCeeEEEEcccccccc-----CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++..+|... ...+.+.++.++|+|||.++++-
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5899999987766442 24578899999999999998873
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.4e-15 Score=105.47 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=83.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++.. +.+++++|+|+++++.++++... . .+++...|....
T Consensus 169 ~rVLDIGcG~G~~a~~la~~~------------g~~V~giDlS~~~l~~A~~~~~~-l-------~v~~~~~D~~~l--- 225 (383)
T PRK11705 169 MRVLDIGCGWGGLARYAAEHY------------GVSVVGVTISAEQQKLAQERCAG-L-------PVEIRLQDYRDL--- 225 (383)
T ss_pred CEEEEeCCCccHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHHhcc-C-------eEEEEECchhhc---
Confidence 369999999999998888763 46899999999999999988742 1 577777777654
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||.|++..+++++. ++..++.++.++|||||++++..++..
T Consensus 226 ~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 226 NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 36799999998888874 467899999999999999998776543
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-15 Score=89.48 Aligned_cols=103 Identities=19% Similarity=0.218 Sum_probs=84.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..+++.. ..+++++|+++..++.++++++.....+ +++++..|..+.. +
T Consensus 3 ~vlD~~~G~G~~~~~~~~~~------------~~~~~gvdi~~~~~~~a~~~~~~~~~~~----~~~~~~~D~~~~~~~~ 66 (117)
T PF13659_consen 3 RVLDPGCGSGTFLLAALRRG------------AARVTGVDIDPEAVELARRNLPRNGLDD----RVEVIVGDARDLPEPL 66 (117)
T ss_dssp EEEEETSTTCHHHHHHHHHC------------TCEEEEEESSHHHHHHHHHHCHHCTTTT----TEEEEESHHHHHHHTC
T ss_pred EEEEcCcchHHHHHHHHHHC------------CCeEEEEEECHHHHHHHHHHHHHccCCc----eEEEEECchhhchhhc
Confidence 69999999999999998872 3789999999999999999999887654 8999999988764 6
Q ss_pred CCCCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|+++-...... ....++.++.++|+|||.++++-
T Consensus 67 ~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 67 PDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 678999999976654321 23678999999999999998753
|
... |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-15 Score=97.24 Aligned_cols=109 Identities=8% Similarity=-0.037 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc-C------CCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-K------VPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~d~ 74 (131)
+|||+|||.|+.+..+++. +..|+++|+|+.+++.+.+...... . .-.+..+++++++|+
T Consensus 37 rvLd~GCG~G~da~~LA~~-------------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~ 103 (213)
T TIGR03840 37 RVFVPLCGKSLDLAWLAEQ-------------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF 103 (213)
T ss_pred eEEEeCCCchhHHHHHHhC-------------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC
Confidence 6999999999999999875 7789999999999998643221100 0 000012689999999
Q ss_pred ccCCCC-CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 75 EELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 75 ~~~~~~-~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+++.. ...||.|+-..++++++ .+...+..+.++|+|||++++..+..
T Consensus 104 ~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 104 FALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred CCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 887532 35799999988888875 45778999999999999877765544
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=95.56 Aligned_cols=100 Identities=15% Similarity=0.233 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.+||+|||+|.++..+++... ...+++++|.++.+++.++++.+..+..+ ++.++..|..+. +..
T Consensus 43 ~vlDlG~GtG~~s~~~a~~~~----------~~~~v~avD~~~~~~~~a~~n~~~~g~~~----~v~~~~~d~~~~l~~~ 108 (198)
T PRK00377 43 MILDIGCGTGSVTVEASLLVG----------ETGKVYAVDKDEKAINLTRRNAEKFGVLN----NIVLIKGEAPEILFTI 108 (198)
T ss_pred EEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHhCCCC----CeEEEEechhhhHhhc
Confidence 689999999999999887754 35689999999999999999988766433 788888887653 222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.||+|++.. ...++...+..+.+.|+|||++++
T Consensus 109 ~~~~D~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~ 143 (198)
T PRK00377 109 NEKFDRIFIGG---GSEKLKEIISASWEIIKKGGRIVI 143 (198)
T ss_pred CCCCCEEEECC---CcccHHHHHHHHHHHcCCCcEEEE
Confidence 36799999864 245678889999999999999976
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.4e-14 Score=94.27 Aligned_cols=98 Identities=13% Similarity=0.082 Sum_probs=79.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++....+.. +++++..|... ++ .
T Consensus 34 ~vLDiG~G~G~~~~~la~~~~-----------~~~v~~vD~s~~~~~~a~~n~~~~~~~-----~i~~~~~d~~~-~~-~ 95 (187)
T PRK08287 34 HLIDVGAGTGSVSIEAALQFP-----------SLQVTAIERNPDALRLIKENRQRFGCG-----NIDIIPGEAPI-EL-P 95 (187)
T ss_pred EEEEECCcCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHhCCC-----CeEEEecCchh-hc-C
Confidence 689999999999999988753 578999999999999999988766543 68888887642 22 3
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..... .....+..+.+.|+|||++++..
T Consensus 96 ~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 96 GKADAIFIGGSGG---NLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCCCEEEECCCcc---CHHHHHHHHHHhcCCCeEEEEEE
Confidence 5799999876543 45678889999999999998754
|
|
| >KOG2361|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-15 Score=99.16 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=91.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+|||.|.....+++..++ +...++++|.|+.+++..+++..... .++.....|+...
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n---------~~l~v~acDfsp~Ai~~vk~~~~~~e------~~~~afv~Dlt~~~~~~ 138 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPN---------NRLKVYACDFSPRAIELVKKSSGYDE------SRVEAFVWDLTSPSLKE 138 (264)
T ss_pred hheeeccCCCcccchhhhcCCC---------CCeEEEEcCCChHHHHHHHhccccch------hhhcccceeccchhccC
Confidence 5899999999999999888652 35899999999999999987765432 1454444554432
Q ss_pred CCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCCccccCC
Q psy890 78 PIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~~~~ 131 (131)
+...+++|+|++.+++..++ .....+..+.++|||||.+++.|++.-....+|+
T Consensus 139 ~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF 194 (264)
T KOG2361|consen 139 PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRF 194 (264)
T ss_pred CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhc
Confidence 35568899999999998875 6789999999999999999999998876655553
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-15 Score=98.21 Aligned_cols=104 Identities=15% Similarity=0.204 Sum_probs=87.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..+++... ..+++++|+++++.+.|+++++.+.+.+ +++++..|++++. .
T Consensus 47 ~IlDlGaG~G~l~L~la~r~~-----------~a~I~~VEiq~~~a~~A~~nv~ln~l~~----ri~v~~~Di~~~~~~~ 111 (248)
T COG4123 47 RILDLGAGNGALGLLLAQRTE-----------KAKIVGVEIQEEAAEMAQRNVALNPLEE----RIQVIEADIKEFLKAL 111 (248)
T ss_pred eEEEecCCcCHHHHHHhccCC-----------CCcEEEEEeCHHHHHHHHHHHHhCcchh----ceeEehhhHHHhhhcc
Confidence 689999999999999998864 5899999999999999999999988886 9999999999874 4
Q ss_pred CCCCeeEEEEcccccccc------------------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT------------------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~------------------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+||+|+|+-...... +.+..+..+.++|||||.+.++-
T Consensus 112 ~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 112 VFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred cccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 445799999964432111 35888999999999999998863
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=96.18 Aligned_cols=97 Identities=15% Similarity=0.094 Sum_probs=80.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. ..+++++|+|++++..++++.......+ ++.+...|+...+
T Consensus 58 ~vLDiGcG~G~~~~~la~~-------------~~~v~gvD~s~~~i~~a~~~~~~~~~~~----~i~~~~~d~~~~~--- 117 (219)
T TIGR02021 58 RVLDAGCGTGLLSIELAKR-------------GAIVKAVDISEQMVQMARNRAQGRDVAG----NVEFEVNDLLSLC--- 117 (219)
T ss_pred EEEEEeCCCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEECChhhCC---
Confidence 6899999999999988764 4589999999999999999987655432 7899999987764
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|++..++++++ +....+.++.+.+++++++.+
T Consensus 118 ~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 118 GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 6899999999887775 467889999999887766654
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-14 Score=98.41 Aligned_cols=100 Identities=20% Similarity=0.104 Sum_probs=80.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||.|+.+..++.. +...|+|+|++.-.+.+..-.-.-.+.. ..+......+++++. .
T Consensus 118 ~VLDIGC~nGY~~frM~~~------------GA~~ViGiDP~~lf~~QF~~i~~~lg~~----~~~~~lplgvE~Lp~-~ 180 (315)
T PF08003_consen 118 RVLDIGCNNGYYSFRMLGR------------GAKSVIGIDPSPLFYLQFEAIKHFLGQD----PPVFELPLGVEDLPN-L 180 (315)
T ss_pred EEEEecCCCcHHHHHHhhc------------CCCEEEEECCChHHHHHHHHHHHHhCCC----ccEEEcCcchhhccc-c
Confidence 6999999999999988876 3467999999998877754322222211 145555567888776 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+.||+|++..+++|..++...|.+++..|+|||.+++
T Consensus 181 ~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvL 217 (315)
T PF08003_consen 181 GAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVL 217 (315)
T ss_pred CCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEE
Confidence 7899999999999999999999999999999999986
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.6e-14 Score=99.74 Aligned_cols=101 Identities=16% Similarity=0.102 Sum_probs=77.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....+..+ ++.....+... ..
T Consensus 161 ~~VLDvGcGsG~lai~aa~~-g-----------~~~V~avDid~~al~~a~~n~~~n~~~~----~~~~~~~~~~~--~~ 222 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKL-G-----------AAKVVGIDIDPLAVESARKNAELNQVSD----RLQVKLIYLEQ--PI 222 (288)
T ss_pred CEEEEeCCChhHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHHcCCCc----ceEEEeccccc--cc
Confidence 37999999999998877653 2 4589999999999999999988776553 56666555322 23
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|+++.... .....+.++.+.|+|||++++....
T Consensus 223 ~~~fDlVvan~~~~---~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 223 EGKADVIVANILAE---VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred CCCceEEEEecCHH---HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 46899999976533 3457889999999999999987654
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.9e-14 Score=81.47 Aligned_cols=101 Identities=27% Similarity=0.369 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+++|+|||+|..+..+++. ...+++++|.++..+..+++....... .+++++..|..+... .
T Consensus 1 ~ildig~G~G~~~~~~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 63 (107)
T cd02440 1 RVLDLGCGTGALALALASG------------PGARVTGVDISPVALELARKAAAALLA-----DNVEVLKGDAEELPPEA 63 (107)
T ss_pred CeEEEcCCccHHHHHHhcC------------CCCEEEEEeCCHHHHHHHHHHHhcccc-----cceEEEEcChhhhcccc
Confidence 5899999999998888772 267999999999999988854333222 268888888877653 4
Q ss_pred CCCeeEEEEcccccc-ccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~-~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||+|++...+++ .......+..+.+.++|+|++++.
T Consensus 64 ~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 64 DESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEEE
Confidence 578999999999988 778889999999999999999874
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4e-14 Score=94.43 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=73.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
.+|||+|||+|.++..+++..+ ..+|+++|+++.|++.+.++..... ++.++..|....
T Consensus 74 ~~VlD~G~G~G~~~~~la~~v~-----------~g~V~avD~~~~ml~~l~~~a~~~~-------nv~~i~~D~~~~~~~ 135 (226)
T PRK04266 74 SKVLYLGAASGTTVSHVSDIVE-----------EGVVYAVEFAPRPMRELLEVAEERK-------NIIPILADARKPERY 135 (226)
T ss_pred CEEEEEccCCCHHHHHHHHhcC-----------CCeEEEEECCHHHHHHHHHHhhhcC-------CcEEEECCCCCcchh
Confidence 3699999999999999988753 4589999999999998877765432 788888887642
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++. ++||+|++.... ......++.++.++|||||.+++
T Consensus 136 ~~l~-~~~D~i~~d~~~--p~~~~~~L~~~~r~LKpGG~lvI 174 (226)
T PRK04266 136 AHVV-EKVDVIYQDVAQ--PNQAEIAIDNAEFFLKDGGYLLL 174 (226)
T ss_pred hhcc-ccCCEEEECCCC--hhHHHHHHHHHHHhcCCCcEEEE
Confidence 122 469999854221 01223458999999999999998
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=98.11 Aligned_cols=104 Identities=13% Similarity=0.060 Sum_probs=78.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.|||+|||+|..+..+++.+. ...+++++|+|++|++.+.+++...... -++.++.+|+.+. +..
T Consensus 66 ~iLELGcGtG~~t~~Ll~~l~----------~~~~~~~iDiS~~mL~~a~~~l~~~~p~----~~v~~i~gD~~~~~~~~ 131 (301)
T TIGR03438 66 ELVELGSGSSRKTRLLLDALR----------QPARYVPIDISADALKESAAALAADYPQ----LEVHGICADFTQPLALP 131 (301)
T ss_pred eEEecCCCcchhHHHHHHhhc----------cCCeEEEEECCHHHHHHHHHHHHhhCCC----ceEEEEEEcccchhhhh
Confidence 589999999999999998864 2478999999999999999887653211 1577788998763 333
Q ss_pred CC----CeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SD----SYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~----~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. ...++++...+++++ +...++.++++.|+|||.+++.
T Consensus 132 ~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 132 PEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred cccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCCCCEEEEe
Confidence 22 233444455677765 4668899999999999999873
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.3e-14 Score=95.95 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=80.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....++.+ +++++..|+.+. ++.
T Consensus 124 ~vLDlG~GsG~i~~~la~~~~-----------~~~v~avDis~~al~~A~~n~~~~~~~~----~i~~~~~D~~~~-~~~ 187 (284)
T TIGR03533 124 RILDLCTGSGCIAIACAYAFP-----------EAEVDAVDISPDALAVAEINIERHGLED----RVTLIQSDLFAA-LPG 187 (284)
T ss_pred EEEEEeCchhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECchhhc-cCC
Confidence 589999999999999988754 5789999999999999999998877653 799999997542 344
Q ss_pred CCeeEEEEcccc-------------cccc------------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGI-------------RNVT------------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l-------------~~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+||+|+++-.. ++-+ ....++.++.++|+|||++++ |.+
T Consensus 188 ~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~-e~g 252 (284)
T TIGR03533 188 RKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV-EVG 252 (284)
T ss_pred CCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE-EEC
Confidence 579999986211 1111 125678889999999999865 554
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.9e-14 Score=93.62 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++... ...+++++|+++ + ... +++.++.+|+...+
T Consensus 54 ~VLDlG~GtG~~t~~l~~~~~----------~~~~V~aVDi~~-~----------~~~-----~~v~~i~~D~~~~~~~~ 107 (209)
T PRK11188 54 TVVDLGAAPGGWSQYAVTQIG----------DKGRVIACDILP-M----------DPI-----VGVDFLQGDFRDELVLK 107 (209)
T ss_pred EEEEEcccCCHHHHHHHHHcC----------CCceEEEEeccc-c----------cCC-----CCcEEEecCCCChHHHH
Confidence 689999999999999988764 356899999988 1 111 16889999988743
Q ss_pred -----CCCCCeeEEEEccccccccC-----------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -----IESDSYSAYTIAFGIRNVTR-----------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+..++||+|++....++..+ ...++..+.++|+|||.+++..+..
T Consensus 108 ~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~ 168 (209)
T PRK11188 108 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQG 168 (209)
T ss_pred HHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecC
Confidence 45678999999776554432 1467899999999999999876654
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.2e-14 Score=94.17 Aligned_cols=101 Identities=24% Similarity=0.247 Sum_probs=80.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++...+ ..+++++|+++.+++.++++....+.. ++.++..|+.+ +++.
T Consensus 90 ~ilDig~G~G~~~~~l~~~~~-----------~~~v~~iD~~~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~-~~~~ 152 (251)
T TIGR03534 90 RVLDLGTGSGAIALALAKERP-----------DARVTAVDISPEALAVARKNAARLGLD-----NVTFLQSDWFE-PLPG 152 (251)
T ss_pred eEEEEeCcHhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhc-cCcC
Confidence 689999999999999988754 568999999999999999998876653 68999999766 3456
Q ss_pred CCeeEEEEcccccccc--------------------------CHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVT--------------------------RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--------------------------~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|+++....... ....++.++.+.|+|||.+++.
T Consensus 153 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~ 216 (251)
T TIGR03534 153 GKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE 216 (251)
T ss_pred CceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 7899999964332111 1246788999999999998774
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-14 Score=91.93 Aligned_cols=97 Identities=10% Similarity=-0.026 Sum_probs=75.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++. ..+++++|++++++..+++++...+.. ++.+...|..+....
T Consensus 80 ~~VLeiG~GsG~~t~~la~~-------------~~~v~~vd~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 141 (212)
T PRK00312 80 DRVLEIGTGSGYQAAVLAHL-------------VRRVFSVERIKTLQWEAKRRLKQLGLH-----NVSVRHGDGWKGWPA 141 (212)
T ss_pred CEEEEECCCccHHHHHHHHH-------------hCEEEEEeCCHHHHHHHHHHHHHCCCC-----ceEEEECCcccCCCc
Confidence 46999999999998866664 247999999999999999999876654 688888887553223
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++...++++ ...+.+.|+|||++++.-.
T Consensus 142 ~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 142 YAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 4689999998765544 3457889999999887543
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.8e-14 Score=97.59 Aligned_cols=105 Identities=20% Similarity=0.164 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.++..++++....+..+ +++++..|+.+. .+.
T Consensus 136 ~VLDlG~GsG~iai~la~~~p-----------~~~V~avDis~~al~~A~~n~~~~~l~~----~i~~~~~D~~~~-l~~ 199 (307)
T PRK11805 136 RILDLCTGSGCIAIACAYAFP-----------DAEVDAVDISPDALAVAEINIERHGLED----RVTLIESDLFAA-LPG 199 (307)
T ss_pred EEEEEechhhHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCCC----cEEEEECchhhh-CCC
Confidence 589999999999999988754 6789999999999999999998776553 799999997542 334
Q ss_pred CCeeEEEEcccc-------------cccc------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGI-------------RNVT------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l-------------~~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++-.. ++.+ ....++.++.++|+|||++++ |.+.
T Consensus 200 ~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~-E~g~ 265 (307)
T PRK11805 200 RRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV-EVGN 265 (307)
T ss_pred CCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 579999986211 1111 125778999999999999976 5443
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-14 Score=93.27 Aligned_cols=99 Identities=14% Similarity=0.116 Sum_probs=76.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||||||+|+.+..++...+ ...+|+++|..+...+.+++++...+.. ++.++.+|.......
T Consensus 74 ~~VLeIGtGsGY~aAlla~lvg----------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~-----nv~~~~gdg~~g~~~ 138 (209)
T PF01135_consen 74 DRVLEIGTGSGYQAALLAHLVG----------PVGRVVSVERDPELAERARRNLARLGID-----NVEVVVGDGSEGWPE 138 (209)
T ss_dssp -EEEEES-TTSHHHHHHHHHHS----------TTEEEEEEESBHHHHHHHHHHHHHHTTH-----SEEEEES-GGGTTGG
T ss_pred CEEEEecCCCcHHHHHHHHhcC----------ccceEEEECccHHHHHHHHHHHHHhccC-----ceeEEEcchhhcccc
Confidence 5799999999999999988875 3568999999999999999999987654 799999997654334
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||.|++.......+ ..+.+.|++||++++.-
T Consensus 139 ~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 139 EAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp G-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred CCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 56899999988776444 33677799999998743
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-13 Score=91.90 Aligned_cols=106 Identities=8% Similarity=-0.055 Sum_probs=79.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-------CCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-------VPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~d~ 74 (131)
+|||+|||.|..+..+++. +.+|+++|+|+.+++.+.+....... ....+.++++...|+
T Consensus 40 rvL~~gCG~G~da~~LA~~-------------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~ 106 (218)
T PRK13255 40 RVLVPLCGKSLDMLWLAEQ-------------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF 106 (218)
T ss_pred eEEEeCCCChHhHHHHHhC-------------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence 6899999999999999875 67899999999999986432111000 000123788999998
Q ss_pred ccCCCC-CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 75 EELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~~~~~~-~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+++.. ...||.|+-..++++++ .+...+..+.++|+|||+++++.
T Consensus 107 ~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 107 FALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 887532 35799999988888886 56789999999999999755533
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=89.67 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=81.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||+|+.+.-+++. ..+|+.+|..++..+.|+++++..+.. ++.++.+|-..---+
T Consensus 74 ~~VLEIGtGsGY~aAvla~l-------------~~~V~siEr~~~L~~~A~~~L~~lg~~-----nV~v~~gDG~~G~~~ 135 (209)
T COG2518 74 DRVLEIGTGSGYQAAVLARL-------------VGRVVSIERIEELAEQARRNLETLGYE-----NVTVRHGDGSKGWPE 135 (209)
T ss_pred CeEEEECCCchHHHHHHHHH-------------hCeEEEEEEcHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCCC
Confidence 47999999999999988887 348999999999999999999998876 799999997664334
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+||.|+........| ..+.+.|++||++++..-
T Consensus 136 ~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 136 EAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEEEc
Confidence 57899999988777666 336778999999988654
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.3e-13 Score=95.08 Aligned_cols=105 Identities=24% Similarity=0.264 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.++..++++....+... ++.++..|+.+ +++.
T Consensus 117 ~vLDlG~GsG~i~l~la~~~~-----------~~~v~avDis~~al~~a~~n~~~~~~~~----~v~~~~~d~~~-~~~~ 180 (284)
T TIGR00536 117 HILDLGTGSGCIALALAYEFP-----------NAEVIAVDISPDALAVAEENAEKNQLEH----RVEFIQSNLFE-PLAG 180 (284)
T ss_pred EEEEEeccHhHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECchhc-cCcC
Confidence 589999999999999988754 5789999999999999999988776542 69999999765 2334
Q ss_pred CCeeEEEEccc-------------ccccc------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFG-------------IRNVT------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~-------------l~~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||+|+++-. ..+.+ ....++.++.++|+|||++++ |++.
T Consensus 181 ~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~-e~g~ 246 (284)
T TIGR00536 181 QKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC-EIGN 246 (284)
T ss_pred CCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE-EECc
Confidence 47999998621 11111 245788899999999999865 5543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-13 Score=91.40 Aligned_cols=102 Identities=18% Similarity=0.130 Sum_probs=77.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. + ..+++++|+++.++..++++....+. ++.++..|+.+. ++.
T Consensus 39 ~vLDlGcG~G~~~~~la~~-~-----------~~~v~~vD~s~~~l~~a~~n~~~~~~------~~~~~~~d~~~~-~~~ 99 (223)
T PRK14967 39 RVLDLCTGSGALAVAAAAA-G-----------AGSVTAVDISRRAVRSARLNALLAGV------DVDVRRGDWARA-VEF 99 (223)
T ss_pred eEEEecCCHHHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHHhCC------eeEEEECchhhh-ccC
Confidence 6899999999998887764 1 35899999999999999998876542 577888887653 445
Q ss_pred CCeeEEEEcccccccc---------------------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT---------------------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~---------------------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++....... ....++.++.++|+|||+++++...
T Consensus 100 ~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~ 161 (223)
T PRK14967 100 RPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSE 161 (223)
T ss_pred CCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 7899999974322110 1356788899999999999886433
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.6e-13 Score=88.90 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=77.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++++..+.. +++++..|+.+. +..
T Consensus 43 ~VLDiG~G~G~~~~~la~~~~-----------~~~V~~vD~s~~~~~~a~~n~~~~~~~-----~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 43 VLWDIGAGTGTIPVEAGLLCP-----------KGRVIAIERDEEVVNLIRRNCDRFGVK-----NVEVIEGSAPECLAQL 106 (196)
T ss_pred EEEEeCCCCCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-----CeEEEECchHHHHhhC
Confidence 689999999999998876543 578999999999999999998876543 788888887542 211
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
...+|.++... ..+....+.++.+.|+|||++++....
T Consensus 107 ~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~~~ 144 (196)
T PRK07402 107 APAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATASS 144 (196)
T ss_pred CCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence 23356665432 235678899999999999999887544
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.5e-13 Score=91.88 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=75.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. ..+++++|+|+.++..++++....+..+ ++.+...|+.. ..
T Consensus 66 ~vLDvGcG~G~~~~~l~~~-------------~~~v~~~D~s~~~i~~a~~~~~~~~~~~----~i~~~~~d~~~---~~ 125 (230)
T PRK07580 66 RILDAGCGVGSLSIPLARR-------------GAKVVASDISPQMVEEARERAPEAGLAG----NITFEVGDLES---LL 125 (230)
T ss_pred EEEEEeCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcCCcc----CcEEEEcCchh---cc
Confidence 6899999999999888764 4569999999999999999887665432 78888888433 34
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++..++++++ +....+..+.+.+++++++.
T Consensus 126 ~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i~ 163 (230)
T PRK07580 126 GRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIFT 163 (230)
T ss_pred CCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEEE
Confidence 6799999999997765 45677888887765544443
|
|
| >KOG1271|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=88.98 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=87.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||.|.+...+++.-- ...++|+|+|+.+++.|+...+..++++ .++|.++|+....+..
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf-----------~~~L~GvDYs~~AV~LA~niAe~~~~~n----~I~f~q~DI~~~~~~~ 134 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGF-----------QSKLTGVDYSEKAVELAQNIAERDGFSN----EIRFQQLDITDPDFLS 134 (227)
T ss_pred ceeeccCCchHHHHHHHHhcC-----------CCCccccccCHHHHHHHHHHHHhcCCCc----ceeEEEeeccCCcccc
Confidence 689999999999998888632 3459999999999999999888888774 6999999998877777
Q ss_pred CCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+.||+|.--..+..+. .+...+..+.++|+|||++++..+.-.
T Consensus 135 ~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T 185 (227)
T KOG1271|consen 135 GQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFT 185 (227)
T ss_pred cceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEEEEEecCcc
Confidence 8899998765554332 235668888999999999999876643
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=88.59 Aligned_cols=104 Identities=23% Similarity=0.190 Sum_probs=79.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|.|+++++.+++++...+... ..+.++..|..+. +..
T Consensus 26 ~vLd~G~G~G~~~~~l~~~-------------~~~v~~~D~s~~~~~~a~~~~~~~~~~~---~~~~~~~~d~~~~-~~~ 88 (188)
T PRK14968 26 RVLEVGTGSGIVAIVAAKN-------------GKKVVGVDINPYAVECAKCNAKLNNIRN---NGVEVIRSDLFEP-FRG 88 (188)
T ss_pred EEEEEccccCHHHHHHHhh-------------cceEEEEECCHHHHHHHHHHHHHcCCCC---cceEEEecccccc-ccc
Confidence 5899999999999988875 4689999999999999999887765532 1278888886553 344
Q ss_pred CCeeEEEEccccccc---------------------cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNV---------------------TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~---------------------~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+||+|+++...... .....++.++.++|+|||.+++...+
T Consensus 89 ~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 89 DKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred cCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 589999986543221 12456799999999999998876543
|
|
| >KOG3010|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.5e-14 Score=94.34 Aligned_cols=103 Identities=18% Similarity=0.176 Sum_probs=74.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++|+|||+|..++.++.+. .+|+++|+|+.|++.+++..+..-... ..+....+..++--.+
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~-------------k~VIatD~s~~mL~~a~k~~~~~y~~t----~~~ms~~~~v~L~g~e 98 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHY-------------KEVIATDVSEAMLKVAKKHPPVTYCHT----PSTMSSDEMVDLLGGE 98 (261)
T ss_pred eEEEeccCCCcchHHHHHhh-------------hhheeecCCHHHHHHhhcCCCcccccC----CccccccccccccCCC
Confidence 47899999998888888873 579999999999999988765432211 1222222233332236
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCc-EEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G-~l~~~~~~ 122 (131)
++.|+|++..++||+ ++++++++++|+||++| .+.+.-+.
T Consensus 99 ~SVDlI~~Aqa~HWF-dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 99 ESVDLITAAQAVHWF-DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred cceeeehhhhhHHhh-chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 899999999999988 67788999999998776 66554433
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.53 E-value=9.2e-14 Score=93.66 Aligned_cols=99 Identities=20% Similarity=0.278 Sum_probs=81.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|||+|+|.++..+++..+ ..+++.+|. ++.++.+++ . ++++++.+|+. .+++.
T Consensus 103 ~vvDvGGG~G~~~~~l~~~~P-----------~l~~~v~Dl-p~v~~~~~~-------~----~rv~~~~gd~f-~~~P~ 158 (241)
T PF00891_consen 103 TVVDVGGGSGHFAIALARAYP-----------NLRATVFDL-PEVIEQAKE-------A----DRVEFVPGDFF-DPLPV 158 (241)
T ss_dssp EEEEET-TTSHHHHHHHHHST-----------TSEEEEEE--HHHHCCHHH-------T----TTEEEEES-TT-TCCSS
T ss_pred EEEeccCcchHHHHHHHHHCC-----------CCcceeecc-Hhhhhcccc-------c----cccccccccHH-hhhcc
Confidence 589999999999999999875 789999998 778888777 2 29999999988 45655
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCC--cEEEEEeccCCCc
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPG--GRFLCLEFSHVNN 126 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~--G~l~~~~~~~~~~ 126 (131)
+|+|++.+++|++++ -..+|+++++.|+|| |++++.|...+..
T Consensus 159 --~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~ 205 (241)
T PF00891_consen 159 --ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDD 205 (241)
T ss_dssp --ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSS
T ss_pred --ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCC
Confidence 999999999999985 458899999999999 9999999875543
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-13 Score=92.91 Aligned_cols=95 Identities=16% Similarity=0.111 Sum_probs=70.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+.+. + ..+++++|+|+.+++.++++....+..+ ++.+...+
T Consensus 122 ~VLDiGcGsG~l~i~~~~~-g-----------~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~-------- 177 (250)
T PRK00517 122 TVLDVGCGSGILAIAAAKL-G-----------AKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGD-------- 177 (250)
T ss_pred EEEEeCCcHHHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCC--------
Confidence 6899999999988766553 2 3469999999999999999988765432 33332222
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||+|+++... ......+.++.+.|+|||++++.....
T Consensus 178 ~~fD~Vvani~~---~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 178 LKADVIVANILA---NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred CCcCEEEEcCcH---HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 269999986532 234577899999999999999876543
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.7e-13 Score=91.93 Aligned_cols=102 Identities=16% Similarity=0.170 Sum_probs=83.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||.|.++..+++..+ ..+++.+|.|..+++.+++++..+..+ +..+...|... +..+
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p-----------~~~vtmvDvn~~Av~~ar~Nl~~N~~~-----~~~v~~s~~~~-~v~~ 223 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSP-----------QAKLTLVDVNARAVESARKNLAANGVE-----NTEVWASNLYE-PVEG 223 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCC-----------CCeEEEEecCHHHHHHHHHhHHHcCCC-----ccEEEEecccc-cccc
Confidence 589999999999999999865 789999999999999999999987765 33455555443 2233
Q ss_pred CCeeEEEEccccccccCH-----HHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRI-----DKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~-----~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+||+|+++-.+|.-.+. .+.+.+..++|++||.|+++--
T Consensus 224 -kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 224 -KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred -cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 89999999998865532 4789999999999999998754
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=93.88 Aligned_cols=104 Identities=17% Similarity=0.122 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.+...++.. +.+++++|+++.++..++++++..+.. ++.+...|+.+++...
T Consensus 185 ~vLDp~cGtG~~lieaa~~-------------~~~v~g~Di~~~~~~~a~~nl~~~g~~-----~i~~~~~D~~~l~~~~ 246 (329)
T TIGR01177 185 RVLDPFCGTGGFLIEAGLM-------------GAKVIGCDIDWKMVAGARINLEHYGIE-----DFFVKRGDATKLPLSS 246 (329)
T ss_pred EEEECCCCCCHHHHHHHHh-------------CCeEEEEcCCHHHHHHHHHHHHHhCCC-----CCeEEecchhcCCccc
Confidence 6899999999987765543 568999999999999999999887754 5788899999888777
Q ss_pred CCeeEEEEccccc--c------c-cCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIR--N------V-TRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~--~------~-~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++.... . . .-...++.++.+.|+|||++++.-.+.
T Consensus 247 ~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 247 ESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 8999999963321 1 1 114788999999999999988765443
|
This family is found exclusively in the Archaea. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-13 Score=89.06 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=88.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|+|.|.|||.++..+++.+. +..+++.+|+-++.++.|++|++..++.+ ++.+...|+.+.-..
T Consensus 96 ~rVlEAGtGSG~lt~~La~~vg----------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d----~v~~~~~Dv~~~~~~ 161 (256)
T COG2519 96 SRVLEAGTGSGALTAYLARAVG----------PEGHVTTYEIREDFAKTARENLSEFGLGD----RVTLKLGDVREGIDE 161 (256)
T ss_pred CEEEEcccCchHHHHHHHHhhC----------CCceEEEEEecHHHHHHHHHHHHHhcccc----ceEEEeccccccccc
Confidence 5799999999999999999876 57899999999999999999999988875 688888998876544
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .||.|+. .++++...+.++.+.|+|||.+.+..
T Consensus 162 ~-~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 162 E-DVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred c-ccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 3 8999977 68899999999999999999988753
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-13 Score=94.67 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=77.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ....++++|.++++++.+++++...+.. ++.++..|.......
T Consensus 82 ~~VLDIG~GtG~~a~~LA~~~~----------~~g~VvgVDis~~~l~~Ar~~l~~~g~~-----nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 82 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVRRLGIE-----NVIFVCGDGYYGVPE 146 (322)
T ss_pred CEEEEEeCCccHHHHHHHHhcC----------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCChhhcccc
Confidence 3689999999999999988754 2357999999999999999998876653 788898887665444
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||+|++..++.+.+ ..+.+.|+|||++++.
T Consensus 147 ~~~fD~Ii~~~g~~~ip------~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 147 FAPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVP 179 (322)
T ss_pred cCCccEEEECCchHHhH------HHHHHhcCCCCEEEEE
Confidence 46799999987655443 3467889999998774
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=89.89 Aligned_cols=100 Identities=12% Similarity=0.018 Sum_probs=74.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|||+|||+|.++..+++.+. +..+|+++|+++.+.+...+...... ++.++..|+...
T Consensus 134 ~~VLDLGaG~G~~t~~lAdiVG----------~~G~VyAVD~s~r~~~dLl~~ak~r~-------NI~~I~~Da~~p~~y 196 (293)
T PTZ00146 134 SKVLYLGAASGTTVSHVSDLVG----------PEGVVYAVEFSHRSGRDLTNMAKKRP-------NIVPIIEDARYPQKY 196 (293)
T ss_pred CEEEEeCCcCCHHHHHHHHHhC----------CCCEEEEEECcHHHHHHHHHHhhhcC-------CCEEEECCccChhhh
Confidence 4799999999999999999875 35689999999887665555544332 788888887542
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....+++|+|++... ...+...++.++.++|||+|.+++.
T Consensus 197 ~~~~~~vDvV~~Dva--~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 197 RMLVPMVDVIFADVA--QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred hcccCCCCEEEEeCC--CcchHHHHHHHHHHhccCCCEEEEE
Confidence 122357999998764 2233445667899999999999883
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.8e-13 Score=88.05 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=76.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+.||+|+|-|+.+..++... ..+|..+|+.+.+++.|++.+..... ....+++..++++....
T Consensus 58 ~alDcGAGIGRVTk~lLl~~------------f~~VDlVEp~~~Fl~~a~~~l~~~~~-----~v~~~~~~gLQ~f~P~~ 120 (218)
T PF05891_consen 58 RALDCGAGIGRVTKGLLLPV------------FDEVDLVEPVEKFLEQAKEYLGKDNP-----RVGEFYCVGLQDFTPEE 120 (218)
T ss_dssp EEEEET-TTTHHHHHTCCCC-------------SEEEEEES-HHHHHHHHHHTCCGGC-----CEEEEEES-GGG----T
T ss_pred eEEecccccchhHHHHHHHh------------cCEeEEeccCHHHHHHHHHHhcccCC-----CcceEEecCHhhccCCC
Confidence 57999999999998776553 56899999999999999987765221 14678888988886555
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|++.|++.+++ +...+|++++..|+|+|++++-|
T Consensus 121 ~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKE 161 (218)
T PF05891_consen 121 GKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKE 161 (218)
T ss_dssp T-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEe
Confidence 7899999999999997 56799999999999999998865
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.4e-13 Score=88.22 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=70.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~~ 79 (131)
+|||+|||+|.++..+++.. ...++++|++++++..++++ +++++..|+.+ . ++
T Consensus 16 ~iLDiGcG~G~~~~~l~~~~------------~~~~~giD~s~~~i~~a~~~------------~~~~~~~d~~~~l~~~ 71 (194)
T TIGR02081 16 RVLDLGCGDGELLALLRDEK------------QVRGYGIEIDQDGVLACVAR------------GVNVIQGDLDEGLEAF 71 (194)
T ss_pred EEEEeCCCCCHHHHHHHhcc------------CCcEEEEeCCHHHHHHHHHc------------CCeEEEEEhhhccccc
Confidence 68999999999988776542 45689999999999887531 45677777765 3 35
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
+.++||+|+++.++++++++...++++.+.+++
T Consensus 72 ~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 72 PDKSFDYVILSQTLQATRNPEEILDEMLRVGRH 104 (194)
T ss_pred CCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCe
Confidence 567899999999999999999999998887664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=83.00 Aligned_cols=99 Identities=23% Similarity=0.216 Sum_probs=82.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++|||||||..+..++... +..+++++|.++++++..++|....+.+ ++.++.+++-+.-...
T Consensus 37 ~l~DIGaGtGsi~iE~a~~~-----------p~~~v~AIe~~~~a~~~~~~N~~~fg~~-----n~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 37 RLWDIGAGTGSITIEWALAG-----------PSGRVIAIERDEEALELIERNAARFGVD-----NLEVVEGDAPEALPDL 100 (187)
T ss_pred EEEEeCCCccHHHHHHHHhC-----------CCceEEEEecCHHHHHHHHHHHHHhCCC-----cEEEEeccchHhhcCC
Confidence 58999999999999999443 4889999999999999999999998854 9999999976542222
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++|.|+...+ .+.+..++.+...|+|||++++.-
T Consensus 101 ~~~daiFIGGg----~~i~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 101 PSPDAIFIGGG----GNIEEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred CCCCEEEECCC----CCHHHHHHHHHHHcCcCCeEEEEe
Confidence 37999999776 467788899999999999998743
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=94.78 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=85.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++..+ ...+++++|+++.++..+++++...+.. ++.++..|....+
T Consensus 254 ~~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~rl~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~ 318 (434)
T PRK14901 254 EVILDACAAPGGKTTHIAELMG----------DQGEIWAVDRSASRLKKLQENAQRLGLK-----SIKILAADSRNLLEL 318 (434)
T ss_pred CEEEEeCCCCchhHHHHHHHhC----------CCceEEEEcCCHHHHHHHHHHHHHcCCC-----eEEEEeCChhhcccc
Confidence 3699999999999999988764 2568999999999999999999887764 7899999987764
Q ss_pred --CCCCCeeEEEEccc------cccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 --IESDSYSAYTIAFG------IRNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 --~~~~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...++||.|++... ++.-++ ...+|.++.+.|||||+++...++-
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred cccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 33568999997432 222222 2577999999999999998776554
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-12 Score=88.14 Aligned_cols=100 Identities=14% Similarity=0.137 Sum_probs=82.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..++..++ +..+++++|++++++..++++++..++.+ +++++.+|+.+. + +
T Consensus 71 ~vLEiGt~~G~s~l~la~~~~----------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~----~i~~~~gda~~~L~~l 136 (234)
T PLN02781 71 NTLEIGVFTGYSLLTTALALP----------EDGRITAIDIDKEAYEVGLEFIKKAGVDH----KINFIQSDALSALDQL 136 (234)
T ss_pred EEEEecCcccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEccHHHHHHHH
Confidence 589999999999998888765 36799999999999999999999988775 899999997653 1 1
Q ss_pred ----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+.++||+|++... -+.....+..+.+.|+|||++++
T Consensus 137 ~~~~~~~~fD~VfiDa~---k~~y~~~~~~~~~ll~~GG~ii~ 176 (234)
T PLN02781 137 LNNDPKPEFDFAFVDAD---KPNYVHFHEQLLKLVKVGGIIAF 176 (234)
T ss_pred HhCCCCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 1468999988532 24556788999999999999876
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.9e-12 Score=88.70 Aligned_cols=100 Identities=23% Similarity=0.216 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++...+ ..+++++|+|+.+++.++++.. .... .++.++..|+... ...
T Consensus 111 ~vLDiG~GsG~~~~~la~~~~-----------~~~v~~iDis~~~l~~a~~n~~-~~~~----~~i~~~~~d~~~~-~~~ 173 (275)
T PRK09328 111 RVLDLGTGSGAIALALAKERP-----------DAEVTAVDISPEALAVARRNAK-HGLG----ARVEFLQGDWFEP-LPG 173 (275)
T ss_pred EEEEEcCcHHHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHH-hCCC----CcEEEEEccccCc-CCC
Confidence 689999999999999988764 5789999999999999999987 2222 2789999987542 234
Q ss_pred CCeeEEEEccccccc--------------------------cCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNV--------------------------TRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~--------------------------~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|+++...... .....++.++.++|+|||++++
T Consensus 174 ~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred CceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 689999985332110 1135678888899999999977
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-13 Score=89.93 Aligned_cols=106 Identities=17% Similarity=0.156 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.|||+|||+|.++..+++..+ ..+++++|+++++++.+++.+...... ++++++..|..+. ...
T Consensus 69 ~vL~IG~G~G~l~~~l~~~~p-----------~~~v~~VEidp~vi~~A~~~f~~~~~~----~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 69 HILQIGLGGGSLAKFIYTYLP-----------DTRQTAVEINPQVIAVARNHFELPENG----ERFEVIEADGAEYIAVH 133 (262)
T ss_pred EEEEECCCHhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHcCCCCCC----CceEEEECCHHHHHHhC
Confidence 589999999999999988764 678999999999999999987654332 2899999997653 222
Q ss_pred CCCeeEEEEcccc-cccc---CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGI-RNVT---RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l-~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++...- ...+ ....++.++.+.|+|||++++.-+.
T Consensus 134 ~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~ 179 (262)
T PRK04457 134 RHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWS 179 (262)
T ss_pred CCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCC
Confidence 3679999985321 1122 2368999999999999999885433
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=91.04 Aligned_cols=99 Identities=19% Similarity=0.171 Sum_probs=71.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.|++.++++.+..........+++|...|+... .
T Consensus 147 ~VLDlGcGtG~~a~~la~~-------------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~ 210 (315)
T PLN02585 147 TVCDAGCGTGSLAIPLALE-------------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---S 210 (315)
T ss_pred EEEEecCCCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---C
Confidence 6999999999999988874 56899999999999999998765421100001578888887553 4
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++..+++++++. ...+..+.+ +.++|.++
T Consensus 211 ~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 211 GKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred CCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 679999999998887643 345555554 45655544
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-12 Score=90.51 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=78.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc---CCCCCCCceeEEecccccC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF---KVPVPNPRLRFLEANAEEL- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~- 77 (131)
+||++|||+|..+..+++..+ ..+++++|+++.+++.+++.+.... ..+ ++++++..|....
T Consensus 79 ~VL~iG~G~G~~~~~~l~~~~-----------~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d---~rv~v~~~Da~~~l 144 (283)
T PRK00811 79 RVLIIGGGDGGTLREVLKHPS-----------VEKITLVEIDERVVEVCRKYLPEIAGGAYDD---PRVELVIGDGIKFV 144 (283)
T ss_pred EEEEEecCchHHHHHHHcCCC-----------CCEEEEEeCCHHHHHHHHHHhHHhccccccC---CceEEEECchHHHH
Confidence 589999999999998887532 5689999999999999999876432 122 3899999997664
Q ss_pred CCCCCCeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
....++||+|++...-...+. ...++..+++.|+|||++++
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 145 AETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred hhCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 234568999998643332221 26778999999999999876
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=88.66 Aligned_cols=107 Identities=11% Similarity=0.119 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++++..+.. ++.++..|....+...
T Consensus 74 ~VLDl~ag~G~kt~~la~~~~----------~~g~v~a~D~~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~~ 138 (264)
T TIGR00446 74 RVLDMAAAPGGKTTQISALMK----------NEGAIVANEFSKSRTKVLIANINRCGVL-----NVAVTNFDGRVFGAAV 138 (264)
T ss_pred EEEEECCCchHHHHHHHHHcC----------CCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEecCCHHHhhhhc
Confidence 699999999999999988764 2468999999999999999999887754 7888888877655444
Q ss_pred CCeeEEEEccccccc------c----------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNV------T----------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~------~----------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+.||.|++....... + ....+|..+.++|||||+++...++-
T Consensus 139 ~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 139 PKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred cCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 569999974322211 1 11358889999999999998776654
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.2e-12 Score=92.23 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....+ .+++++..|+.+... .
T Consensus 254 rVLDLGcGSG~IaiaLA~~~p-----------~a~VtAVDiS~~ALe~AreNa~~~g------~rV~fi~gDl~e~~l~~ 316 (423)
T PRK14966 254 RVWDLGTGSGAVAVTVALERP-----------DAFVRASDISPPALETARKNAADLG------ARVEFAHGSWFDTDMPS 316 (423)
T ss_pred EEEEEeChhhHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEcchhcccccc
Confidence 589999999999998887643 6789999999999999999987654 178999999765432 2
Q ss_pred CCCeeEEEEccccccc---------------------c----CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNV---------------------T----RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~---------------------~----~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|+++-.-... . -..+++.++.++|+|||.+++ |++.
T Consensus 317 ~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil-EiG~ 383 (423)
T PRK14966 317 EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL-EHGF 383 (423)
T ss_pred CCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE-EECc
Confidence 3579999995432100 0 124677778889999999764 5544
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.7e-13 Score=90.46 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=73.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||+|||||-+++..++. +..+++++|+++.+++.++++...+++.. .++....+.... ..
T Consensus 164 ~~vlDvGcGSGILaIAa~kL------------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~----~~~~~~~~~~~~-~~ 226 (300)
T COG2264 164 KTVLDVGCGSGILAIAAAKL------------GAKKVVGVDIDPQAVEAARENARLNGVEL----LVQAKGFLLLEV-PE 226 (300)
T ss_pred CEEEEecCChhHHHHHHHHc------------CCceEEEecCCHHHHHHHHHHHHHcCCch----hhhcccccchhh-cc
Confidence 47999999999999987765 36779999999999999999999877652 122222222221 12
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|+++=. . .-......++.+.++|||++++.-
T Consensus 227 ~~~~DvIVANIL-A--~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 227 NGPFDVIVANIL-A--EVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cCcccEEEehhh-H--HHHHHHHHHHHHHcCCCceEEEEe
Confidence 358999998642 2 123477889999999999998753
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=95.95 Aligned_cols=104 Identities=21% Similarity=0.184 Sum_probs=79.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....++.+ ++.++..|+.+. ...
T Consensus 141 ~VLDlG~GsG~iai~la~~~p-----------~~~v~avDis~~al~~A~~N~~~~~l~~----~v~~~~~D~~~~-~~~ 204 (506)
T PRK01544 141 NILELGTGSGCIAISLLCELP-----------NANVIATDISLDAIEVAKSNAIKYEVTD----RIQIIHSNWFEN-IEK 204 (506)
T ss_pred EEEEccCchhHHHHHHHHHCC-----------CCeEEEEECCHHHHHHHHHHHHHcCCcc----ceeeeecchhhh-CcC
Confidence 589999999999998888754 6789999999999999999988776553 788998886542 334
Q ss_pred CCeeEEEEccccc--------------ccc------------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIR--------------NVT------------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~--------------~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++-... +.+ ....++.++.++|+|||.+++ |.+
T Consensus 205 ~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l-Eig 270 (506)
T PRK01544 205 QKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL-EIG 270 (506)
T ss_pred CCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE-EEC
Confidence 6799999953211 101 124567888899999999875 544
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2e-12 Score=93.67 Aligned_cols=108 Identities=19% Similarity=0.251 Sum_probs=85.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++++..+.. ++.+...|...++ ..
T Consensus 240 ~VLD~cagpGgkt~~la~~~~----------~~g~V~a~Dis~~rl~~~~~n~~r~g~~-----~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 240 RVLDTCAAPGGKTTAIAELMK----------DQGKILAVDISREKIQLVEKHAKRLKLS-----SIEIKIADAERLTEYV 304 (431)
T ss_pred EEEEeCCCccHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----eEEEEECchhhhhhhh
Confidence 699999999999999988764 3578999999999999999999887754 6889999987764 34
Q ss_pred CCCeeEEEEccccccc------cC----------------HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||.|++...+... ++ ..++|.++.+.|+|||+++...++..
T Consensus 305 ~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 305 QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 5679999974332111 11 24668899999999999988777643
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-13 Score=90.85 Aligned_cols=96 Identities=16% Similarity=0.110 Sum_probs=71.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||||-+++..++. +..+++++|+++.+++.++++...+++.+ ++.+. ... ....
T Consensus 164 ~vLDvG~GSGILaiaA~kl------------GA~~v~a~DiDp~Av~~a~~N~~~N~~~~----~~~v~--~~~--~~~~ 223 (295)
T PF06325_consen 164 RVLDVGCGSGILAIAAAKL------------GAKKVVAIDIDPLAVEAARENAELNGVED----RIEVS--LSE--DLVE 223 (295)
T ss_dssp EEEEES-TTSHHHHHHHHT------------TBSEEEEEESSCHHHHHHHHHHHHTT-TT----CEEES--CTS--CTCC
T ss_pred EEEEeCCcHHHHHHHHHHc------------CCCeEEEecCCHHHHHHHHHHHHHcCCCe----eEEEE--Eec--cccc
Confidence 6899999999999877775 35689999999999999999999988774 55442 111 2234
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++-... -+...+..+.+.|+|||++++.-
T Consensus 224 ~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSG 259 (295)
T PF06325_consen 224 GKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSG 259 (295)
T ss_dssp S-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEE
T ss_pred ccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEcc
Confidence 7899999865322 34567788899999999998853
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=93.13 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=83.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|..+..+++... ...+++++|+++.+++.++++++..++. +++++..|....+ +.
T Consensus 253 ~VLDlgaG~G~kt~~la~~~~----------~~~~V~avD~s~~~l~~~~~~~~~~g~~-----~v~~~~~Da~~~~-~~ 316 (445)
T PRK14904 253 TVLDLCAAPGGKSTFMAELMQ----------NRGQITAVDRYPQKLEKIRSHASALGIT-----IIETIEGDARSFS-PE 316 (445)
T ss_pred EEEEECCCCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHhCCC-----eEEEEeCcccccc-cC
Confidence 699999999999998888764 2468999999999999999999887764 7899999987754 44
Q ss_pred CCeeEEEEccc------ccccc----------------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFG------IRNVT----------------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~------l~~~~----------------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+||+|++... +..-+ ....+|.++.++|+|||++++..++-.
T Consensus 317 ~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 317 EQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 67999996311 11011 123579999999999999998776653
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=92.80 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=81.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 79 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.++..++++++..+... ++.+..+|....+.
T Consensus 241 ~VLDlcag~G~kt~~la~~~~-----------~~~v~a~D~~~~~l~~~~~n~~r~g~~~----~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 241 TILDACAAPGGKTTHILELAP-----------QAQVVALDIHEHRLKRVYENLKRLGLTI----KAETKDGDGRGPSQWA 305 (426)
T ss_pred eEEEeCCCccHHHHHHHHHcC-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCe----EEEEeccccccccccc
Confidence 699999999999999988754 4689999999999999999998876532 45556666554432
Q ss_pred CCCCeeEEEEc------cccccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ESDSYSAYTIA------FGIRNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~~~~D~i~~~------~~l~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...+||.|++. ..++..++ ...+|.++.++|||||+++...++-
T Consensus 306 ~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 306 ENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred cccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 45679999963 22333332 2578999999999999999877765
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.42 E-value=3e-12 Score=83.77 Aligned_cols=103 Identities=21% Similarity=0.187 Sum_probs=81.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
.+||||||.|.+...++...+ ...++|+|+....+..+.++....++. |+.++..|+... .
T Consensus 20 l~lEIG~G~G~~l~~~A~~~P-----------d~n~iGiE~~~~~v~~a~~~~~~~~l~-----Nv~~~~~da~~~l~~~ 83 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNP-----------DINFIGIEIRKKRVAKALRKAEKRGLK-----NVRFLRGDARELLRRL 83 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHST-----------TSEEEEEES-HHHHHHHHHHHHHHTTS-----SEEEEES-CTTHHHHH
T ss_pred eEEEecCCCCHHHHHHHHHCC-----------CCCEEEEecchHHHHHHHHHHHhhccc-----ceEEEEccHHHHHhhc
Confidence 479999999999999999865 789999999999999999998887765 999999998773 2
Q ss_pred CCCCCeeEEEEccccccccC--------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++++++|.|+.++.--|... -..++..+.+.|+|||.+.+..
T Consensus 84 ~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 84 FPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp STTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 55689999999877665542 2688999999999999998853
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-12 Score=91.55 Aligned_cols=106 Identities=18% Similarity=0.236 Sum_probs=81.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
..|||+|||+|..+..+++..+ ..+++++|.++.++..++++++..+. +++++..|..+.+
T Consensus 246 ~~VLDlgaG~G~~t~~la~~~~-----------~~~v~a~D~s~~~l~~~~~n~~~~g~------~~~~~~~D~~~~~~~ 308 (427)
T PRK10901 246 ERVLDACAAPGGKTAHILELAP-----------QAQVVALDIDAQRLERVRENLQRLGL------KATVIVGDARDPAQW 308 (427)
T ss_pred CEEEEeCCCCChHHHHHHHHcC-----------CCEEEEEeCCHHHHHHHHHHHHHcCC------CeEEEEcCcccchhh
Confidence 3699999999999999988753 46899999999999999999987653 4678888887653
Q ss_pred CCCCCeeEEEEccccc------------cccC----------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIR------------NVTR----------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~------------~~~~----------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+..++||.|++..... +... ...++..+.+.|+|||++++..++-
T Consensus 309 ~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~ 375 (427)
T PRK10901 309 WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSI 375 (427)
T ss_pred cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 2356799999643221 1111 2367899999999999999876543
|
|
| >KOG2940|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=9.1e-14 Score=91.38 Aligned_cols=108 Identities=11% Similarity=0.087 Sum_probs=89.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++||||+-|.....+... ...+++.+|.|..|++.++..- ... -.+.....|.+.+++.+
T Consensus 75 ~a~diGcs~G~v~rhl~~e------------~vekli~~DtS~~M~~s~~~~q-dp~------i~~~~~v~DEE~Ldf~e 135 (325)
T KOG2940|consen 75 TAFDIGCSLGAVKRHLRGE------------GVEKLIMMDTSYDMIKSCRDAQ-DPS------IETSYFVGDEEFLDFKE 135 (325)
T ss_pred ceeecccchhhhhHHHHhc------------chhheeeeecchHHHHHhhccC-CCc------eEEEEEecchhcccccc
Confidence 4789999999999888776 3568999999999999987542 222 15677888988899999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCccc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~~ 128 (131)
+++|+|+++..+||.+++...+.+++..|||+|.++-.-++..+...
T Consensus 136 ns~DLiisSlslHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyE 182 (325)
T KOG2940|consen 136 NSVDLIISSLSLHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYE 182 (325)
T ss_pred cchhhhhhhhhhhhhccCchHHHHHHHhcCCCccchhHHhccccHHH
Confidence 99999999999999999999999999999999999876555554433
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-12 Score=84.86 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=74.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....+ .+++..|+.+. + .
T Consensus 89 ~vLDlg~GsG~i~l~la~~~~-----------~~~v~~vDis~~al~~A~~N~~~~~--------~~~~~~D~~~~l~~~ 149 (251)
T TIGR03704 89 VVVDLCCGSGAVGAALAAALD-----------GIELHAADIDPAAVRCARRNLADAG--------GTVHEGDLYDALPTA 149 (251)
T ss_pred EEEEecCchHHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcC--------CEEEEeechhhcchh
Confidence 589999999999999987754 5689999999999999999987543 46777786543 1 1
Q ss_pred CCCCeeEEEEcccccc------cc----------------C----HHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRN------VT----------------R----IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~------~~----------------~----~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..++||+|+++-.... .+ + ...++..+.++|+|||++++.
T Consensus 150 ~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~ 215 (251)
T TIGR03704 150 LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE 215 (251)
T ss_pred cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1357999998643211 00 1 246777888999999999864
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.6e-12 Score=84.88 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=83.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||.|.|+|.++..+++.+. +..+|+.+|..++..+.|+++++..++.+ ++++...|+.+..+.
T Consensus 42 ~~VlEaGtGSG~lt~~l~r~v~----------p~G~v~t~E~~~~~~~~A~~n~~~~gl~~----~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 42 SRVLEAGTGSGSLTHALARAVG----------PTGHVYTYEFREDRAEKARKNFERHGLDD----NVTVHHRDVCEEGFD 107 (247)
T ss_dssp -EEEEE--TTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHTTCCT----TEEEEES-GGCG--S
T ss_pred CEEEEecCCcHHHHHHHHHHhC----------CCeEEEccccCHHHHHHHHHHHHHcCCCC----CceeEecceeccccc
Confidence 4799999999999999999986 57899999999999999999999998875 899999998654332
Q ss_pred ---CCCeeEEEEccccccccCHHHHHHHHHHhc-cCCcEEEEE
Q psy890 81 ---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL-KPGGRFLCL 119 (131)
Q Consensus 81 ---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L-~p~G~l~~~ 119 (131)
+..+|.|+. .++++...+..+.+.| ++||++.+.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGGGGHHHHHHHE-EEEEEEEEE
T ss_pred ccccCcccEEEE-----eCCCHHHHHHHHHHHHhcCCceEEEE
Confidence 367999976 6788899999999999 899998764
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=90.49 Aligned_cols=105 Identities=15% Similarity=0.173 Sum_probs=82.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|..+..+++..+ +..+++++|+++.+++.++++++..+.. +++++..|..... +
T Consensus 253 ~VLDlgaG~G~~t~~la~~~~----------~~~~v~avDi~~~~l~~~~~n~~~~g~~-----~v~~~~~D~~~~~~~~ 317 (444)
T PRK14902 253 TVLDACAAPGGKTTHIAELLK----------NTGKVVALDIHEHKLKLIEENAKRLGLT-----NIETKALDARKVHEKF 317 (444)
T ss_pred EEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCCcccccchh
Confidence 689999999999999998763 2568999999999999999999887764 6899999987653 2
Q ss_pred CCCCeeEEEEccccccc------c---------C-------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNV------T---------R-------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~------~---------~-------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+ ++||+|++....... + + ...++..+.+.|||||.++...++
T Consensus 318 ~-~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 318 A-EKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred c-ccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 2 679999985432111 1 0 135789999999999999875544
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-12 Score=83.33 Aligned_cols=87 Identities=15% Similarity=0.132 Sum_probs=72.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.+|||+|||.|.+...+.+.. +.+.+|+|++++.+..+.++ -+..++.|+++. .
T Consensus 15 srVLDLGCGdG~LL~~L~~~k------------~v~g~GvEid~~~v~~cv~r------------Gv~Viq~Dld~gL~~ 70 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDEK------------QVDGYGVEIDPDNVAACVAR------------GVSVIQGDLDEGLAD 70 (193)
T ss_pred CEEEecCCCchHHHHHHHHhc------------CCeEEEEecCHHHHHHHHHc------------CCCEEECCHHHhHhh
Confidence 369999999999887776652 68899999999888777543 466888887764 3
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhcc
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 111 (131)
+++++||.||++..+..+.+++..|.++.|+-+
T Consensus 71 f~d~sFD~VIlsqtLQ~~~~P~~vL~EmlRVgr 103 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVRRPDEVLEEMLRVGR 103 (193)
T ss_pred CCCCCccEEehHhHHHhHhHHHHHHHHHHHhcC
Confidence 889999999999999999999999999987733
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.7e-12 Score=82.90 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=82.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+|||||+++|+.+..+++.++ ...+++.+|.+++..+.|++.+...++.+ +++++.+|..+. +
T Consensus 48 ~vLEIGt~~GySal~la~~l~----------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~----~I~~~~gda~~~l~~l 113 (205)
T PF01596_consen 48 RVLEIGTFTGYSALWLAEALP----------EDGKITTIEIDPERAEIARENFRKAGLDD----RIEVIEGDALEVLPEL 113 (205)
T ss_dssp EEEEESTTTSHHHHHHHHTST----------TTSEEEEEESSHHHHHHHHHHHHHTTGGG----GEEEEES-HHHHHHHH
T ss_pred eEEEeccccccHHHHHHHhhc----------ccceEEEecCcHHHHHHHHHHHHhcCCCC----cEEEEEeccHhhHHHH
Confidence 589999999999999999876 46899999999999999999999888765 899999997653 1
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.++||+|+.-.. -.+....+..+.++|+|||.+++
T Consensus 114 ~~~~~~~~fD~VFiDa~---K~~y~~y~~~~~~ll~~ggvii~ 153 (205)
T PF01596_consen 114 ANDGEEGQFDFVFIDAD---KRNYLEYFEKALPLLRPGGVIIA 153 (205)
T ss_dssp HHTTTTTSEEEEEEEST---GGGHHHHHHHHHHHEEEEEEEEE
T ss_pred HhccCCCceeEEEEccc---ccchhhHHHHHhhhccCCeEEEE
Confidence 12358999988653 34667788889999999999976
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.4e-12 Score=83.12 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=68.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++... ...+++++|+|+.+ .. +++.++..|+.+..
T Consensus 35 ~VLDiG~GtG~~~~~l~~~~~----------~~~~v~~vDis~~~-----------~~-----~~i~~~~~d~~~~~~~~ 88 (188)
T TIGR00438 35 TVLDLGAAPGGWSQVAVEQVG----------GKGRVIAVDLQPMK-----------PI-----ENVDFIRGDFTDEEVLN 88 (188)
T ss_pred EEEEecCCCCHHHHHHHHHhC----------CCceEEEEeccccc-----------cC-----CCceEEEeeCCChhHHH
Confidence 689999999999998888753 25689999999853 11 16778888876532
Q ss_pred -----CCCCCeeEEEEccccc----c-cc------CHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 -----IESDSYSAYTIAFGIR----N-VT------RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~----~-~~------~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.+.++||+|++....+ + .. .....+..+.+.|+|||++++..+
T Consensus 89 ~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 89 KIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 3456799999854321 1 11 236789999999999999988543
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-11 Score=83.74 Aligned_cols=97 Identities=9% Similarity=0.187 Sum_probs=75.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++.... ..+++++|+++.+++.++++.. ++.++..|+.+.. ..
T Consensus 67 rVLDLGcGsGilsl~la~r~~-----------~~~V~gVDisp~al~~Ar~n~~----------~v~~v~~D~~e~~-~~ 124 (279)
T PHA03411 67 KVLDLCAGIGRLSFCMLHRCK-----------PEKIVCVELNPEFARIGKRLLP----------EAEWITSDVFEFE-SN 124 (279)
T ss_pred eEEEcCCCCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHhCc----------CCEEEECchhhhc-cc
Confidence 689999999999888877642 4689999999999999987641 6788999988754 34
Q ss_pred CCeeEEEEcccccccc--C------------------HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--R------------------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~------------------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++..+.+.+ + ..+.+.....+|+|+|.++++-
T Consensus 125 ~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~y 183 (279)
T PHA03411 125 EKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAY 183 (279)
T ss_pred CCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEE
Confidence 6799999976655432 1 2466777888999999887763
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.7e-11 Score=81.59 Aligned_cols=108 Identities=9% Similarity=-0.089 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-------cCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-------FKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d~ 74 (131)
+||..|||.|.....|+.. +.+|+|+|+|+..++.+.+..... .....+..++++.++|+
T Consensus 46 rvLvPgCGkg~D~~~LA~~-------------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~ 112 (226)
T PRK13256 46 VCLIPMCGCSIDMLFFLSK-------------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADI 112 (226)
T ss_pred eEEEeCCCChHHHHHHHhC-------------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccC
Confidence 6899999999999999886 678999999999999986632100 00000112789999999
Q ss_pred ccCCCC---CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EELPIE---SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~~~~---~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+++.. .+.||.|+-...++.++ .+.+..+++.++|+|||.++++.+.
T Consensus 113 f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 113 FNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred cCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 987532 25799999999998886 4678999999999999998876554
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.9e-11 Score=84.07 Aligned_cols=104 Identities=21% Similarity=0.212 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||||..+..++...+ ..+|+++|+|+.++..|+++....++. ++.++..|..+- ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~-----------~~~V~a~Dis~~Al~~A~~Na~~~~l~-----~~~~~~~dlf~~-~~- 174 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGP-----------DAEVIAVDISPDALALARENAERNGLV-----RVLVVQSDLFEP-LR- 174 (280)
T ss_pred cEEEecCChHHHHHHHHhhCc-----------CCeEEEEECCHHHHHHHHHHHHHcCCc-----cEEEEeeecccc-cC-
Confidence 489999999999999999864 579999999999999999999988762 666666665442 22
Q ss_pred CCeeEEEEcccc--cc----cc-------------------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGI--RN----VT-------------------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l--~~----~~-------------------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++-.- .. .+ -..+++.++.++|+|||.+++ +++..
T Consensus 175 ~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l-e~g~~ 241 (280)
T COG2890 175 GKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL-EIGLT 241 (280)
T ss_pred CceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE-EECCC
Confidence 389999996331 11 00 136778889999999888755 55533
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=81.27 Aligned_cols=100 Identities=16% Similarity=0.165 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEe-cccccC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLE-ANAEEL-P- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~-~- 78 (131)
.|||+|++.|..+..++..++ ...+++.+|.++++.+.|+++++..++.+ ++..+. +|..+. .
T Consensus 62 ~iLEiGT~~GySal~mA~~l~----------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~----~i~~~~~gdal~~l~~ 127 (219)
T COG4122 62 RILEIGTAIGYSALWMALALP----------DDGRLTTIERDEERAEIARENLAEAGVDD----RIELLLGGDALDVLSR 127 (219)
T ss_pred eEEEeecccCHHHHHHHhhCC----------CCCeEEEEeCCHHHHHHHHHHHHHcCCcc----eEEEEecCcHHHHHHh
Confidence 589999999999999999886 35699999999999999999999999886 787777 464442 2
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
...++||+|+.-. .-.+...++..+.++|+|||++++
T Consensus 128 ~~~~~fDliFIDa---dK~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 128 LLDGSFDLVFIDA---DKADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred ccCCCccEEEEeC---ChhhCHHHHHHHHHHhCCCcEEEE
Confidence 3468999998743 334667889999999999999987
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.7e-12 Score=79.68 Aligned_cols=94 Identities=11% Similarity=-0.004 Sum_probs=70.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++.... +++++..|+.+++++.
T Consensus 16 ~vLEiG~G~G~lt~~l~~~-------------~~~v~~vE~~~~~~~~~~~~~~~~~-------~v~ii~~D~~~~~~~~ 75 (169)
T smart00650 16 TVLEIGPGKGALTEELLER-------------AARVTAIEIDPRLAPRLREKFAAAD-------NLTVIHGDALKFDLPK 75 (169)
T ss_pred EEEEECCCccHHHHHHHhc-------------CCeEEEEECCHHHHHHHHHHhccCC-------CEEEEECchhcCCccc
Confidence 6899999999999999876 4589999999999999998886422 8999999999887766
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHh--ccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRV--LKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~--L~p~G~l~~ 118 (131)
..||.|+++...+.. ...+..+.+. +.++|.+++
T Consensus 76 ~~~d~vi~n~Py~~~---~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 76 LQPYKVVGNLPYNIS---TPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred cCCCEEEECCCcccH---HHHHHHHHhcCCCcceEEEEE
Confidence 679999887655432 2334444433 335566543
|
|
| >KOG2899|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-12 Score=82.38 Aligned_cols=106 Identities=12% Similarity=0.137 Sum_probs=72.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC-------C----------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP-------N---------- 64 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~-------~---------- 64 (131)
.+|||||.+|.++..+++... ...+.|+|+++..++.|+++++...-..-. +
T Consensus 61 ~~LDIGCNsG~lt~~iak~F~-----------~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~ 129 (288)
T KOG2899|consen 61 QALDIGCNSGFLTLSIAKDFG-----------PRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ 129 (288)
T ss_pred eeEeccCCcchhHHHHHHhhc-----------cceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc
Confidence 479999999999999999986 567999999999999999987653200000 0
Q ss_pred -------------CceeEEecccc-c----CCCCCCCeeEEEEcccccccc------CHHHHHHHHHHhccCCcEEEE
Q psy890 65 -------------PRLRFLEANAE-E----LPIESDSYSAYTIAFGIRNVT------RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 65 -------------~~~~~~~~d~~-~----~~~~~~~~D~i~~~~~l~~~~------~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.++.+...+.. + +......||+|+|...-.|+. .+.+++.++.++|.|||++++
T Consensus 130 ~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 130 RNEADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 01111100000 0 012345799999865544432 467899999999999999976
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.9e-11 Score=83.61 Aligned_cols=100 Identities=11% Similarity=0.072 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|+++|..+..++..++ +..+++.+|.+++..+.|+++++..++.+ +++++.+|+.+. + +
T Consensus 121 ~VLEIGT~tGySal~lA~al~----------~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~----~I~li~GdA~e~L~~l 186 (278)
T PLN02476 121 RCIEVGVYTGYSSLAVALVLP----------ESGCLVACERDSNSLEVAKRYYELAGVSH----KVNVKHGLAAESLKSM 186 (278)
T ss_pred eEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHHH
Confidence 689999999999999998765 35689999999999999999999998875 899999997653 2 1
Q ss_pred ----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..++||+|+.-.. -.+....+..+.++|+|||.+++
T Consensus 187 ~~~~~~~~FD~VFIDa~---K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 187 IQNGEGSSYDFAFVDAD---KRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred HhcccCCCCCEEEECCC---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 1358999988543 34567888999999999999876
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.4e-11 Score=86.35 Aligned_cols=110 Identities=16% Similarity=0.214 Sum_probs=72.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCC-C----CCceeEEecccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-P----NPRLRFLEANAE 75 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~d~~ 75 (131)
.+|||+|||-|......... ....++|+|++...++.|+++.....-... . .....++..|..
T Consensus 64 ~~VLDl~CGkGGDL~Kw~~~------------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 64 LTVLDLCCGKGGDLQKWQKA------------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp -EEEEET-TTTTTHHHHHHT------------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CeEEEecCCCchhHHHHHhc------------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 36999999977765555443 257899999999999999999932110000 0 013566777754
Q ss_pred cCC----CCC--CCeeEEEEccccccc-c---CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 76 ELP----IES--DSYSAYTIAFGIRNV-T---RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 76 ~~~----~~~--~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
... +.. ..||+|-|.+++|+. . .....|..+.+.|+|||+++.+-..
T Consensus 132 ~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 132 SESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp CSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred cchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 321 233 489999999999875 3 3567899999999999999876543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.8e-11 Score=80.67 Aligned_cols=103 Identities=19% Similarity=0.124 Sum_probs=87.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+||||||.|.....+++..+ ...++|+|+....+..+.+.+...++. |+.+++.|+..+-
T Consensus 51 i~lEIGfG~G~~l~~~A~~nP-----------~~nfiGiEi~~~~v~~~l~k~~~~~l~-----Nlri~~~DA~~~l~~~ 114 (227)
T COG0220 51 IVLEIGFGMGEFLVEMAKKNP-----------EKNFLGIEIRVPGVAKALKKIKELGLK-----NLRLLCGDAVEVLDYL 114 (227)
T ss_pred EEEEECCCCCHHHHHHHHHCC-----------CCCEEEEEEehHHHHHHHHHHHHcCCC-----cEEEEcCCHHHHHHhc
Confidence 479999999999999999865 678999999999999999999988865 8999999977752
Q ss_pred CCCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+++++.|-|..++.--|...+ ..+++.+.+.|+|||.+.+..
T Consensus 115 ~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 115 IPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCeeEEEEECCCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 344599999998876666532 588999999999999998853
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-11 Score=83.19 Aligned_cols=104 Identities=12% Similarity=0.115 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||++|||+|..+..+++... ..+++++|+++++++.+++.+.... ..+ ++++++..|.... .
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~-----------~~~v~~veid~~vi~~a~~~~~~~~~~~~~---~~v~i~~~D~~~~l~ 140 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKS-----------VEKATLVDIDEKVIELSKKFLPSLAGSYDD---PRVDLQIDDGFKFLA 140 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCC-----------cceEEEEeCCHHHHHHHHHHhHhhcccccC---CceEEEECchHHHHH
Confidence 689999999999888877632 5689999999999999998875432 111 3688888775442 2
Q ss_pred CCCCCeeEEEEcccccccc--C--HHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVT--R--IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~--~--~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++.......+ + ...+++.+++.|+|||++++.
T Consensus 141 ~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 141 DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 2246899999865422222 2 367889999999999999875
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=88.27 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=80.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..++.. +..+++++|.|+.+++.+++++..+++.. .+++++..|+.+.- +
T Consensus 223 rVLDlfsgtG~~~l~aa~~------------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~---~~v~~i~~D~~~~l~~~ 287 (396)
T PRK15128 223 RVLNCFSYTGGFAVSALMG------------GCSQVVSVDTSQEALDIARQNVELNKLDL---SKAEFVRDDVFKLLRTY 287 (396)
T ss_pred eEEEeccCCCHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCC---CcEEEEEccHHHHHHHH
Confidence 5899999999987765432 24589999999999999999999877641 16899999977642 1
Q ss_pred --CCCCeeEEEEccccc--cc-------cCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 --ESDSYSAYTIAFGIR--NV-------TRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 --~~~~~D~i~~~~~l~--~~-------~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
...+||+|++.-.-- .- .+....+..+.++|+|||.++.+.++...
T Consensus 288 ~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~ 344 (396)
T PRK15128 288 RDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLM 344 (396)
T ss_pred HhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcC
Confidence 245799999863321 10 12445566778999999999987766443
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.31 E-value=2e-11 Score=81.92 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=71.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|+|.|..+..++... .+++++|.|..|....++ .+ .+.+ +..++...+
T Consensus 97 ~lLDlGAGdG~VT~~l~~~f-------------~~v~aTE~S~~Mr~rL~~----kg--------~~vl--~~~~w~~~~ 149 (265)
T PF05219_consen 97 SLLDLGAGDGEVTERLAPLF-------------KEVYATEASPPMRWRLSK----KG--------FTVL--DIDDWQQTD 149 (265)
T ss_pred ceEEecCCCcHHHHHHHhhc-------------ceEEeecCCHHHHHHHHh----CC--------CeEE--ehhhhhccC
Confidence 58999999999999998864 579999999998666543 22 2222 222333334
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+||+|.|.+++....++...|.++++.|+|+|++++
T Consensus 150 ~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 150 FKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred CceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEE
Confidence 6799999999999999999999999999999999886
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-11 Score=81.09 Aligned_cols=108 Identities=15% Similarity=0.103 Sum_probs=79.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccCCC------CCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVP------VPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~d~ 74 (131)
+||..|||.|.....+++. +.+|+|+|+|+.+++.+.+.... ..... ....+++++++|+
T Consensus 40 rvLvPgCG~g~D~~~La~~-------------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf 106 (218)
T PF05724_consen 40 RVLVPGCGKGYDMLWLAEQ-------------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF 106 (218)
T ss_dssp EEEETTTTTSCHHHHHHHT-------------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T
T ss_pred eEEEeCCCChHHHHHHHHC-------------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc
Confidence 5899999999999988886 67999999999999998443221 11000 0123678999999
Q ss_pred ccCCCCC-CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..++... ++||+|+=..+++.++ .+.+..+++.++|+|||.++++.+.
T Consensus 107 F~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~ 157 (218)
T PF05724_consen 107 FELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLE 157 (218)
T ss_dssp TTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEE
T ss_pred ccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 8875332 4799999998888876 6789999999999999995444333
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-11 Score=92.69 Aligned_cols=107 Identities=15% Similarity=0.124 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++..+++.. .+++++..|+.++- ..
T Consensus 541 rVLDlf~gtG~~sl~aa~~------------Ga~~V~~vD~s~~al~~a~~N~~~ng~~~---~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 541 DFLNLFAYTGTASVHAALG------------GAKSTTTVDMSNTYLEWAERNFALNGLSG---RQHRLIQADCLAWLKEA 605 (702)
T ss_pred eEEEcCCCCCHHHHHHHHC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCCc---cceEEEEccHHHHHHHc
Confidence 6899999999999988874 24579999999999999999998877652 17899999976532 11
Q ss_pred CCCeeEEEEcccc-----------ccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGI-----------RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l-----------~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..+||+|++.-.- ....+....+..+.++|+|||.+++.....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4679999984321 112234667888899999999998765443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.1e-11 Score=84.93 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=76.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-----hhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-----RDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
+||++|||+|.....+++.. +..+++++|+++++++.|++.. ....+.+ ++++++..|..+
T Consensus 153 rVLIIGgGdG~tlrelLk~~-----------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~D---pRV~vvi~Da~~ 218 (374)
T PRK01581 153 RVLILGGGDGLALREVLKYE-----------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFD---NRVNVHVCDAKE 218 (374)
T ss_pred EEEEECCCHHHHHHHHHhcC-----------CCCeEEEEeCCHHHHHHHHhccccchhccccCCC---CceEEEECcHHH
Confidence 58999999999888887753 2578999999999999999621 1122222 489999999776
Q ss_pred C-CCCCCCeeEEEEccccccc---c--CHHHHHHHHHHhccCCcEEEEE
Q psy890 77 L-PIESDSYSAYTIAFGIRNV---T--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~-~~~~~~~D~i~~~~~l~~~---~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ....+.||+|++...-... . --..++..+++.|+|||++++-
T Consensus 219 fL~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 219 FLSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred HHHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 4 3345689999997431111 1 1256889999999999998764
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.2e-11 Score=82.44 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||++|||.|..+..++++. +..+++.+|+++.+++.+++.+... .+.+ ++++++..|....-
T Consensus 94 rVLiIGgG~G~~~rellk~~-----------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~d---pRv~vi~~Da~~~l~ 159 (308)
T PLN02366 94 KVLVVGGGDGGVLREIARHS-----------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDD---PRVNLHIGDGVEFLK 159 (308)
T ss_pred eEEEEcCCccHHHHHHHhCC-----------CCCeEEEEECCHHHHHHHHHhhhhhccccCC---CceEEEEChHHHHHh
Confidence 58999999999999888762 2578999999999999999987643 2222 48999999965431
Q ss_pred -CCCCCeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.++||+|++...-.+.+. -..++..+++.|+|||+++.
T Consensus 160 ~~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 160 NAPEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred hccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 23467999998544332221 24689999999999999864
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=83.87 Aligned_cols=115 Identities=11% Similarity=0.051 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-------------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD------------------------- 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~------------------------- 56 (131)
+|...||+||.-...++-.+.+..+.. ....+++++|+|+.+++.|++..-.
T Consensus 118 rIWSAgCStGEEpYSlAmll~e~~~~~---~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~ 194 (287)
T PRK10611 118 RVWSAAASTGEEPYSIAMTLADTLGTA---PGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEG 194 (287)
T ss_pred EEEEccccCCHHHHHHHHHHHHhhccc---CCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCc
Confidence 688999999987666655543211100 0257899999999999999875211
Q ss_pred -ccCCCCCCCceeEEecccccCCCC-CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 57 -LFKVPVPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 57 -~~~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+.+.-...+.|...|+.+.+++ .+.||+|+|.+++.++. ...+++..+.+.|+|||++++-
T Consensus 195 ~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG 261 (287)
T PRK10611 195 LVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAG 261 (287)
T ss_pred eEEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 001111123578888888765433 57899999999998885 5779999999999999998763
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.5e-11 Score=78.90 Aligned_cols=95 Identities=9% Similarity=0.146 Sum_probs=69.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..... +..+++++|+++.++..++++.. ++.++..|+...++ .
T Consensus 52 rVLDlG~GSG~Lalala~~~~~~--------~~~~V~aVEID~~Al~~Ar~n~~----------~~~~~~~D~~~~~~-~ 112 (241)
T PHA03412 52 SVVDLCAGIGGLSFAMVHMMMYA--------KPREIVCVELNHTYYKLGKRIVP----------EATWINADALTTEF-D 112 (241)
T ss_pred EEEEccChHHHHHHHHHHhcccC--------CCcEEEEEECCHHHHHHHHhhcc----------CCEEEEcchhcccc-c
Confidence 69999999999999888764311 14689999999999999997742 57788889876544 4
Q ss_pred CCeeEEEEcccccccc--C----------HHHHHHHHHHhccCCcE
Q psy890 82 DSYSAYTIAFGIRNVT--R----------IDKALSEAYRVLKPGGR 115 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~----------~~~~l~~~~~~L~p~G~ 115 (131)
.+||+|+++-...... + ...++..+.+++++|+.
T Consensus 113 ~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 113 TLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 5899999975543221 1 34577888885565554
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.8e-11 Score=80.15 Aligned_cols=100 Identities=13% Similarity=0.076 Sum_probs=82.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|+++|..+..++..++ +..+++.+|.+++....|++.+...++.+ +++++.++..+. + +
T Consensus 82 ~iLEiGT~~GySal~la~al~----------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~----~I~~~~G~a~e~L~~l 147 (247)
T PLN02589 82 NTMEIGVYTGYSLLATALALP----------EDGKILAMDINRENYELGLPVIQKAGVAH----KIDFREGPALPVLDQM 147 (247)
T ss_pred EEEEEeChhhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHCCCCC----ceEEEeccHHHHHHHH
Confidence 689999999999999988765 46799999999999999999999988875 899999986653 2 1
Q ss_pred -----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 -----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 -----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..++||+|+.-.. -......+..+.++|+|||++++
T Consensus 148 ~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 148 IEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred HhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEE
Confidence 1258999988643 33456778888999999999876
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-11 Score=77.37 Aligned_cols=102 Identities=16% Similarity=0.113 Sum_probs=79.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEecccccC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~--~ 78 (131)
.|||||||||..+..+++.++ ...+.-.|.++..+..........+.+ ++ .-+..|+... +
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP-----------~l~WqPSD~~~~~~~sI~a~~~~~~~~-----Nv~~P~~lDv~~~~w~ 91 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALP-----------HLTWQPSDPDDNLRPSIRAWIAEAGLP-----NVRPPLALDVSAPPWP 91 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCC-----------CCEEcCCCCChHHHhhHHHHHHhcCCc-----ccCCCeEeecCCCCCc
Confidence 389999999999999999986 688999999998877776666555443 32 2344555443 2
Q ss_pred C------CCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 I------ESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~------~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ...+||.|++.+++|-++ ..+..+....+.|++||.++++
T Consensus 92 ~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~Y 140 (204)
T PF06080_consen 92 WELPAPLSPESFDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLY 140 (204)
T ss_pred cccccccCCCCcceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 2 346899999999999876 5678899999999999999885
|
The function of this family is unknown. |
| >KOG1541|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.6e-11 Score=76.99 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=70.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc-cCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE-ELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 80 (131)
.|||||||+|-.+..+... +-.++|+|+|+.|++.+.++--. -.++..|+- .+|+.
T Consensus 53 ~iLDIGCGsGLSg~vL~~~-------------Gh~wiGvDiSpsML~~a~~~e~e----------gdlil~DMG~Glpfr 109 (270)
T KOG1541|consen 53 LILDIGCGSGLSGSVLSDS-------------GHQWIGVDISPSMLEQAVERELE----------GDLILCDMGEGLPFR 109 (270)
T ss_pred EEEEeccCCCcchheeccC-------------CceEEeecCCHHHHHHHHHhhhh----------cCeeeeecCCCCCCC
Confidence 5899999999776655443 56799999999999999863221 234555544 46899
Q ss_pred CCCeeEEEEcccccccc-------C----HHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVT-------R----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~-------~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
.++||-+|+...++|+= + +..++..++..|++|++.++
T Consensus 110 pGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~ 158 (270)
T KOG1541|consen 110 PGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL 158 (270)
T ss_pred CCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE
Confidence 99999999977776652 1 34678889999999998765
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-11 Score=87.92 Aligned_cols=104 Identities=16% Similarity=0.142 Sum_probs=77.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh--hh---ccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA--RD---LFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~d~~~ 76 (131)
+||++|||+|..+..++++ + ...+++++|+++++++.++++. .. ....+ ++++++..|..+
T Consensus 300 rVL~IG~G~G~~~~~ll~~-~----------~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~d---prv~vi~~Da~~ 365 (521)
T PRK03612 300 RVLVLGGGDGLALREVLKY-P----------DVEQVTLVDLDPAMTELARTSPALRALNGGALDD---PRVTVVNDDAFN 365 (521)
T ss_pred eEEEEcCCccHHHHHHHhC-C----------CcCeEEEEECCHHHHHHHHhCCcchhhhccccCC---CceEEEEChHHH
Confidence 6899999999999988875 2 2379999999999999999842 22 12222 389999999776
Q ss_pred C-CCCCCCeeEEEEccccccccC-----HHHHHHHHHHhccCCcEEEEE
Q psy890 77 L-PIESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~-~~~~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ....++||+|++...-...+. ...+++.+++.|+|||++++.
T Consensus 366 ~l~~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~ 414 (521)
T PRK03612 366 WLRKLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQ 414 (521)
T ss_pred HHHhCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEe
Confidence 4 223468999999754333221 245789999999999998763
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-11 Score=77.76 Aligned_cols=116 Identities=16% Similarity=0.098 Sum_probs=70.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccC---------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFK--------------------- 59 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~--------------------- 59 (131)
+|...||++|.-+..++-.+.+..... .....+++++|+|+.+++.|++..-. ..+
T Consensus 34 rIWSagCStGeE~YSlAmll~e~~~~~--~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 34 RIWSAGCSTGEEPYSLAMLLLELLPGA--LGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp EEEETT-TTTHHHHHHHHHHHHHH-S---TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred EEEECCCCCChhHHHHHHHHHHHhccc--CCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 688899999987655554443200000 00257999999999999999773210 000
Q ss_pred -CCCCCCceeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 60 -VPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 60 -~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+.-..+++|...|+.+.+...+.||+|+|.+++-++. ...+++..+.+.|+|||+|++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG 174 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLG 174 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-
T ss_pred EChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEe
Confidence 00002357888888777333457899999999998886 4578999999999999999874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-12 Score=83.98 Aligned_cols=101 Identities=17% Similarity=0.126 Sum_probs=78.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
++||+|||||-....+... ..+++|+|+|++|+.++.++-- .-.+...+...+. .
T Consensus 128 ~~lDLGCGTGL~G~~lR~~-------------a~~ltGvDiS~nMl~kA~eKg~----------YD~L~~Aea~~Fl~~~ 184 (287)
T COG4976 128 RMLDLGCGTGLTGEALRDM-------------ADRLTGVDISENMLAKAHEKGL----------YDTLYVAEAVLFLEDL 184 (287)
T ss_pred eeeecccCcCcccHhHHHH-------------HhhccCCchhHHHHHHHHhccc----------hHHHHHHHHHHHhhhc
Confidence 5899999999988888766 3579999999999999876421 2233344433221 4
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++.||+|.+.-++.++-+++.++.-....|+|||.+.|..-+.+.
T Consensus 185 ~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~ 230 (287)
T COG4976 185 TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPD 230 (287)
T ss_pred cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCC
Confidence 5678999999999999999999999999999999999886444433
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-10 Score=75.15 Aligned_cols=106 Identities=15% Similarity=0.083 Sum_probs=70.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~- 78 (131)
+|||+|||+|-.++.++...+ ..+|+.+|.++ .++..+.+++.+. .. .++.+...+..+..
T Consensus 48 ~VLELGaG~Gl~gi~~a~~~~-----------~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~----~~v~v~~L~Wg~~~~ 111 (173)
T PF10294_consen 48 RVLELGAGTGLPGIAAAKLFG-----------AARVVLTDYNE-VLELLRRNIELNGSLLD----GRVSVRPLDWGDELD 111 (173)
T ss_dssp EEEETT-TTSHHHHHHHHT-T------------SEEEEEE-S--HHHHHHHHHHTT------------EEEE--TTS-HH
T ss_pred eEEEECCccchhHHHHHhccC-----------CceEEEeccch-hhHHHHHHHHhcccccc----ccccCcEEEecCccc
Confidence 689999999998888877633 67899999998 8998988887754 22 26777777754411
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
....+||+|+.+-++++-.....++.-+.++|+++|.+++....+
T Consensus 112 ~~~~~~~~~D~IlasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 112 SDLLEPHSFDVILASDVLYDEELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp HHHHS-SSBSEEEEES--S-GGGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred ccccccccCCEEEEecccchHHHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 334689999999999988888899999999999998876654444
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.4e-11 Score=82.20 Aligned_cols=99 Identities=13% Similarity=0.096 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|-++...++. +..+++++|.|+ +.+.+.+.+..+++.+ .++++.+.+++..+|.
T Consensus 63 ~VlDVGcGtGILS~F~akA------------GA~~V~aVe~S~-ia~~a~~iv~~N~~~~----ii~vi~gkvEdi~LP~ 125 (346)
T KOG1499|consen 63 TVLDVGCGTGILSMFAAKA------------GARKVYAVEASS-IADFARKIVKDNGLED----VITVIKGKVEDIELPV 125 (346)
T ss_pred EEEEcCCCccHHHHHHHHh------------CcceEEEEechH-HHHHHHHHHHhcCccc----eEEEeecceEEEecCc
Confidence 5899999999999988776 467899999765 6699999999998885 7899999999887777
Q ss_pred CCeeEEEEccccccc---cCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++.|+|++=|+=+++ .-++..|-.--+.|+|||.++
T Consensus 126 eKVDiIvSEWMGy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 126 EKVDIIVSEWMGYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred cceeEEeehhhhHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 899999997664443 345677777778999999875
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.2e-10 Score=72.02 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=85.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+.|||+|+|||.++..++.+-- ....++.++.|++++....+.+. .+.++.+|+..+.
T Consensus 50 lpVlElGPGTGV~TkaIL~~gv----------~~~~L~~iE~~~dF~~~L~~~~p----------~~~ii~gda~~l~~~ 109 (194)
T COG3963 50 LPVLELGPGTGVITKAILSRGV----------RPESLTAIEYSPDFVCHLNQLYP----------GVNIINGDAFDLRTT 109 (194)
T ss_pred CeeEEEcCCccHhHHHHHhcCC----------CccceEEEEeCHHHHHHHHHhCC----------CccccccchhhHHHH
Confidence 3689999999999999988743 35689999999999999988774 4557778876653
Q ss_pred ---CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 ---IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+...||.|++...+.+++ ...++|+++...|.+||.++...++.
T Consensus 110 l~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp 159 (194)
T COG3963 110 LGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGP 159 (194)
T ss_pred HhhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecC
Confidence 4566799999998888887 45688999999999999999888773
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=84.63 Aligned_cols=104 Identities=14% Similarity=0.092 Sum_probs=75.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||+|-++...++...... ...+|++++.|+.++...++++...++.+ +++++..|+.++..+
T Consensus 189 vVldVGAGrGpL~~~al~A~~~~~-------~a~~VyAVEkn~~A~~~l~~~v~~n~w~~----~V~vi~~d~r~v~lp- 256 (448)
T PF05185_consen 189 VVLDVGAGRGPLSMFALQAGARAG-------GAVKVYAVEKNPNAVVTLQKRVNANGWGD----KVTVIHGDMREVELP- 256 (448)
T ss_dssp EEEEES-TTSHHHHHHHHTTHHHC-------CESEEEEEESSTHHHHHHHHHHHHTTTTT----TEEEEES-TTTSCHS-
T ss_pred EEEEeCCCccHHHHHHHHHHHHhC-------CCeEEEEEcCCHhHHHHHHHHHHhcCCCC----eEEEEeCcccCCCCC-
Confidence 589999999999877766531000 25799999999998888888777777775 899999999998654
Q ss_pred CCeeEEEEccc--cccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
.++|+||+=.. +-.-+-....|....+.|||+|+++
T Consensus 257 ekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 257 EKVDIIVSELLGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp S-EEEEEE---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred CceeEEEEeccCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 48999998322 2222234566888899999999875
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.9e-10 Score=88.73 Aligned_cols=112 Identities=16% Similarity=0.033 Sum_probs=80.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC-----------CCCCceeEE
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-----------VPNPRLRFL 70 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~ 70 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++...++..+ ....+++++
T Consensus 121 ~VLDlG~GSG~Iai~La~~~~-----------~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~ 189 (1082)
T PLN02672 121 TVAELGCGNGWISIAIAEKWL-----------PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFY 189 (1082)
T ss_pred EEEEEecchHHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEE
Confidence 589999999999999998864 5689999999999999999987653220 001268999
Q ss_pred ecccccCCCC-CCCeeEEEEcccc--c------------cc--------------------cC----HHHHHHHHHHhcc
Q psy890 71 EANAEELPIE-SDSYSAYTIAFGI--R------------NV--------------------TR----IDKALSEAYRVLK 111 (131)
Q Consensus 71 ~~d~~~~~~~-~~~~D~i~~~~~l--~------------~~--------------------~~----~~~~l~~~~~~L~ 111 (131)
..|+...... ..+||+|+++-.- . +- .+ ..+++.+..++|+
T Consensus 190 ~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~ 269 (1082)
T PLN02672 190 ESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIK 269 (1082)
T ss_pred ECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhcc
Confidence 9997654211 1369999985320 0 00 00 2567888889999
Q ss_pred CCcEEEEEeccCCC
Q psy890 112 PGGRFLCLEFSHVN 125 (131)
Q Consensus 112 p~G~l~~~~~~~~~ 125 (131)
|||.++ .|++...
T Consensus 270 pgG~l~-lEiG~~q 282 (1082)
T PLN02672 270 PMGIMI-FNMGGRP 282 (1082)
T ss_pred CCCEEE-EEECccH
Confidence 999886 4666544
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-10 Score=79.12 Aligned_cols=96 Identities=13% Similarity=0.123 Sum_probs=71.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|.++..++.. ..+++++|.++.+++.++++.+..+.. +++++..|+.++.. .
T Consensus 176 ~VLDl~cG~G~~sl~la~~-------------~~~V~gvD~s~~av~~A~~n~~~~~l~-----~v~~~~~D~~~~~~~~ 237 (315)
T PRK03522 176 SMWDLFCGVGGFGLHCATP-------------GMQLTGIEISAEAIACAKQSAAELGLT-----NVQFQALDSTQFATAQ 237 (315)
T ss_pred EEEEccCCCCHHHHHHHhc-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEcCHHHHHHhc
Confidence 6899999999999988874 568999999999999999999887763 79999999877532 2
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.||+|++.-.-. .....+.++...++|++++++
T Consensus 238 ~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyv 272 (315)
T PRK03522 238 GEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYS 272 (315)
T ss_pred CCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEE
Confidence 34699999864311 122233344444677766655
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-10 Score=72.69 Aligned_cols=103 Identities=14% Similarity=0.079 Sum_probs=72.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
++||+|||+|.++..++.. ...+++++|.++.+++.++++++..+.. +++++..|+.+. +..
T Consensus 56 ~vLDl~~GsG~l~l~~lsr------------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~-----~v~~~~~D~~~~l~~~ 118 (199)
T PRK10909 56 RCLDCFAGSGALGLEALSR------------YAAGATLLEMDRAVAQQLIKNLATLKAG-----NARVVNTNALSFLAQP 118 (199)
T ss_pred EEEEcCCCccHHHHHHHHc------------CCCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEEchHHHHHhhc
Confidence 5899999999999865443 2468999999999999999998877653 789999997653 222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~~~~~~ 123 (131)
..+||+|++.-.... .-....+..+.. +|+|++++++ ++..
T Consensus 119 ~~~fDlV~~DPPy~~-g~~~~~l~~l~~~~~l~~~~iv~v-e~~~ 161 (199)
T PRK10909 119 GTPHNVVFVDPPFRK-GLLEETINLLEDNGWLADEALIYV-ESEV 161 (199)
T ss_pred CCCceEEEECCCCCC-ChHHHHHHHHHHCCCcCCCcEEEE-EecC
Confidence 346999999765321 112334444443 3788887765 5444
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.15 E-value=4.6e-10 Score=81.88 Aligned_cols=96 Identities=17% Similarity=0.131 Sum_probs=72.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.|||+|||+|.++..+++. ..+++++|+|+++++.++++....+.. +++++..|+.+.
T Consensus 300 ~VLDlgcGtG~~sl~la~~-------------~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~~~~~d~~~~l~~~ 361 (443)
T PRK13168 300 RVLDLFCGLGNFTLPLARQ-------------AAEVVGVEGVEAMVERARENARRNGLD-----NVTFYHANLEEDFTDQ 361 (443)
T ss_pred EEEEEeccCCHHHHHHHHh-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEEeChHHhhhhh
Confidence 6899999999999988875 468999999999999999998877654 799999997653
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..++||+|++.-.-.. ....+..+.+ ++|++++++.
T Consensus 362 ~~~~~~fD~Vi~dPPr~g---~~~~~~~l~~-~~~~~ivyvS 399 (443)
T PRK13168 362 PWALGGFDKVLLDPPRAG---AAEVMQALAK-LGPKRIVYVS 399 (443)
T ss_pred hhhcCCCCEEEECcCCcC---hHHHHHHHHh-cCCCeEEEEE
Confidence 233467999988543222 2344554444 6888877664
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=5.8e-10 Score=82.46 Aligned_cols=102 Identities=11% Similarity=-0.010 Sum_probs=84.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.+||||||.|.+...++...+ ...++|+|+....+..+.+.....++. |+.++..|+..+. +
T Consensus 350 ~~lEIG~G~G~~~~~~A~~~p-----------~~~~iGiE~~~~~~~~~~~~~~~~~l~-----N~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 350 VFLEIGFGMGEHFINQAKMNP-----------DALFIGVEVYLNGVANVLKLAGEQNIT-----NFLLFPNNLDLILNDL 413 (506)
T ss_pred eEEEECCCchHHHHHHHHhCC-----------CCCEEEEEeeHHHHHHHHHHHHHcCCC-----eEEEEcCCHHHHHHhc
Confidence 479999999999999998865 688999999999999988887776665 8888888765432 6
Q ss_pred CCCCeeEEEEccccccccC--------HHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+++|.|+.++.--|... -..++..+.+.|+|||.+.+.
T Consensus 414 ~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~ 461 (506)
T PRK01544 414 PNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFA 461 (506)
T ss_pred CcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEE
Confidence 7788999999888766653 267899999999999999875
|
|
| >KOG2904|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-09 Score=73.84 Aligned_cols=103 Identities=19% Similarity=0.184 Sum_probs=76.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE----- 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----- 76 (131)
.|||+|||+|..+..++..++ ...++++|.|+.++..+.+|.....+.. ++..+..+++.
T Consensus 151 ~ildlgtGSGaIslsll~~L~-----------~~~v~AiD~S~~Ai~La~eN~qr~~l~g----~i~v~~~~me~d~~~~ 215 (328)
T KOG2904|consen 151 HILDLGTGSGAISLSLLHGLP-----------QCTVTAIDVSKAAIKLAKENAQRLKLSG----RIEVIHNIMESDASDE 215 (328)
T ss_pred eEEEecCCccHHHHHHHhcCC-----------CceEEEEeccHHHHHHHHHHHHHHhhcC----ceEEEecccccccccc
Confidence 489999999999999998875 6889999999999999999999887764 66666444332
Q ss_pred CCCCCCCeeEEEEcccc--c-cc-----------------------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 LPIESDSYSAYTIAFGI--R-NV-----------------------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l--~-~~-----------------------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+...+++|+++++-.- + .+ ...-.+..-+.|+|+|||.+.+-
T Consensus 216 ~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le 284 (328)
T KOG2904|consen 216 HPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE 284 (328)
T ss_pred cccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence 23456789999986331 1 00 01244566677999999998763
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.7e-10 Score=73.64 Aligned_cols=87 Identities=22% Similarity=0.239 Sum_probs=57.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|-|+|||.+.++..+- ....|+.+|.-. . +-.+...|+.+.|+++
T Consensus 75 viaD~GCGdA~la~~~~--------------~~~~V~SfDLva-----------~---------n~~Vtacdia~vPL~~ 120 (219)
T PF05148_consen 75 VIADFGCGDAKLAKAVP--------------NKHKVHSFDLVA-----------P---------NPRVTACDIANVPLED 120 (219)
T ss_dssp -EEEES-TT-HHHHH----------------S---EEEEESS------------S---------STTEEES-TTS-S--T
T ss_pred EEEECCCchHHHHHhcc--------------cCceEEEeeccC-----------C---------CCCEEEecCccCcCCC
Confidence 68999999998774432 145799999743 1 3346779999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++.|++++...|.. .++..++.+..|+|||||.++++|...
T Consensus 121 ~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 121 ESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp T-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 99999999877653 478889999999999999999998653
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG1975|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.3e-10 Score=76.66 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=76.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC-CCCCceeEEecccccC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-VPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~~~--- 77 (131)
.++++|||-|......-+. +...++++|+++..+++|+++.+...... .....+.|+.+|-...
T Consensus 120 ~~~~LgCGKGGDLlKw~kA------------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~ 187 (389)
T KOG1975|consen 120 DVLDLGCGKGGDLLKWDKA------------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLM 187 (389)
T ss_pred ccceeccCCcccHhHhhhh------------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHH
Confidence 3688999998765544433 36789999999999999999987542111 0111367888874332
Q ss_pred ---CCCCCCeeEEEEccccccc-c---CHHHHHHHHHHhccCCcEEEEE
Q psy890 78 ---PIESDSYSAYTIAFGIRNV-T---RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++++.+||+|-|.+++|.. . ....+|.++.+.|+|||+++-+
T Consensus 188 d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 188 DLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence 2344459999999998763 3 4667899999999999999864
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-10 Score=75.09 Aligned_cols=116 Identities=13% Similarity=0.047 Sum_probs=79.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-----ccCCCC--------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-----LFKVPV-------------- 62 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-----~~~~~~-------------- 62 (131)
+|.-.||+||.-...++-.+.+..+. ......+++++|+|..+++.|+...-. .+++..
T Consensus 99 rIWSaaCStGEEpYSiAm~l~e~~~~--~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 99 RIWSAACSTGEEPYSLAMLLLEALGK--LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred EEEecCcCCCccHHHHHHHHHHHhcc--ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 57889999998766665544322211 011258999999999999998763221 111100
Q ss_pred -----CCCceeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 63 -----PNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 63 -----~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
-...+.|...|+...+...+.||+|+|.+++-.+. ...+++...+..|+|||++++-
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG 240 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLG 240 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEc
Confidence 01235666666655443446799999999998886 4568899999999999999873
|
|
| >KOG1500|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=75.56 Aligned_cols=97 Identities=14% Similarity=0.144 Sum_probs=75.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+||+|||+|-++...+.. +..++++++. ++|.+.|++.++.+.+.+ ++..+.+.+++..++
T Consensus 180 iVlDVGaGSGILS~FAaqA------------GA~~vYAvEA-S~MAqyA~~Lv~~N~~~~----rItVI~GKiEdieLP- 241 (517)
T KOG1500|consen 180 IVLDVGAGSGILSFFAAQA------------GAKKVYAVEA-SEMAQYARKLVASNNLAD----RITVIPGKIEDIELP- 241 (517)
T ss_pred EEEEecCCccHHHHHHHHh------------CcceEEEEeh-hHHHHHHHHHHhcCCccc----eEEEccCccccccCc-
Confidence 4799999999998877766 4678999996 559999999999887776 899999999988665
Q ss_pred CCeeEEEEccc---cccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++.|+||+--+ +-+-..+ ......++.|+|+|.++
T Consensus 242 Ek~DviISEPMG~mL~NERML-EsYl~Ark~l~P~GkMf 279 (517)
T KOG1500|consen 242 EKVDVIISEPMGYMLVNERML-ESYLHARKWLKPNGKMF 279 (517)
T ss_pred hhccEEEeccchhhhhhHHHH-HHHHHHHhhcCCCCccc
Confidence 67899998322 2222223 34456679999999875
|
|
| >KOG1661|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-09 Score=70.42 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=76.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCC-----CCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-----PNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~d~~~ 76 (131)
.+||+|+|||+++..++..+.. ++...+|+|.-++.++.+++++......++ .+.+..++.+|-..
T Consensus 85 s~LdvGsGSGYLt~~~~~mvg~---------~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~ 155 (237)
T KOG1661|consen 85 SFLDVGSGSGYLTACFARMVGA---------TGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK 155 (237)
T ss_pred ceeecCCCccHHHHHHHHHhcC---------CCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc
Confidence 5899999999999999988751 244559999999999999998876542111 12357788888776
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..-...+||.|.+..... ...+++...|+|||++++-
T Consensus 156 g~~e~a~YDaIhvGAaa~------~~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 156 GYAEQAPYDAIHVGAAAS------ELPQELLDQLKPGGRLLIP 192 (237)
T ss_pred cCCccCCcceEEEccCcc------ccHHHHHHhhccCCeEEEe
Confidence 655667899999975433 2335677788999999874
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.4e-09 Score=66.97 Aligned_cols=111 Identities=21% Similarity=0.193 Sum_probs=73.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+||.-||+|.+.++.+.......+ ..... ..+++|.|+++.++..++++++..++.. .+.+...|+.++++..
T Consensus 31 ~vlDP~CGsGtiliEaa~~~~~~~~-~~~~~-~~~~~g~Di~~~~v~~a~~N~~~ag~~~----~i~~~~~D~~~l~~~~ 104 (179)
T PF01170_consen 31 VVLDPFCGSGTILIEAALMGANIPP-LNDIN-ELKIIGSDIDPKAVRGARENLKAAGVED----YIDFIQWDARELPLPD 104 (179)
T ss_dssp -EEETT-TTSHHHHHHHHHHTTTST-TTH-C-H--EEEEESSHHHHHHHHHHHHHTT-CG----GEEEEE--GGGGGGTT
T ss_pred EEeecCCCCCHHHHHHHHHhhCccc-ccccc-cccEEecCCCHHHHHHHHHHHHhcccCC----ceEEEecchhhccccc
Confidence 5899999999998887776542111 00000 1249999999999999999999888764 7899999999998777
Q ss_pred CCeeEEEEccccc--ccc--C----HHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIR--NVT--R----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~--~~~--~----~~~~l~~~~~~L~p~G~l~~ 118 (131)
+++|.|+++...- .-. + ...++.++.+.+++..++++
T Consensus 105 ~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp SBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred CCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 8999999964432 111 1 24567888888888434433
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >KOG3191|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=9.4e-09 Score=65.62 Aligned_cols=103 Identities=15% Similarity=0.111 Sum_probs=77.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
.+|||||+|..+..++..+. +...+.++|+|+.+++..++..+.++. .+..++.|+... +..+
T Consensus 47 ~lEIG~GSGvvstfL~~~i~----------~~~~~latDiNp~A~~~Tl~TA~~n~~------~~~~V~tdl~~~-l~~~ 109 (209)
T KOG3191|consen 47 CLEIGCGSGVVSTFLASVIG----------PQALYLATDINPEALEATLETARCNRV------HIDVVRTDLLSG-LRNE 109 (209)
T ss_pred EEEecCCcchHHHHHHHhcC----------CCceEEEecCCHHHHHHHHHHHHhcCC------ccceeehhHHhh-hccC
Confidence 69999999999999988876 578899999999999998888876653 567778886653 2337
Q ss_pred CeeEEEEcccc--c-------------cc--c----CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 83 SYSAYTIAFGI--R-------------NV--T----RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 83 ~~D~i~~~~~l--~-------------~~--~----~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.|+++.+-.. . |. . -.++++.++-.+|+|.|.++++-..
T Consensus 110 ~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~ 170 (209)
T KOG3191|consen 110 SVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALR 170 (209)
T ss_pred CccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehh
Confidence 78888774321 1 11 1 1467788888999999999886543
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.7e-09 Score=71.75 Aligned_cols=106 Identities=13% Similarity=0.141 Sum_probs=81.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.||-+|.|.|..++.++++.. ..+++.+|+++..++.+++.+........ .++++++..|..++- ..
T Consensus 79 ~VLiiGgGdG~tlRevlkh~~-----------ve~i~~VEID~~Vi~~ar~~l~~~~~~~~-dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 79 RVLIIGGGDGGTLREVLKHLP-----------VERITMVEIDPAVIELARKYLPEPSGGAD-DPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred eEEEECCCccHHHHHHHhcCC-----------cceEEEEEcCHHHHHHHHHhccCcccccC-CCceEEEeccHHHHHHhC
Confidence 589999999999999999864 67999999999999999998876541111 248999999977652 22
Q ss_pred CCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++||+|++-..-.--+ --..+++.+++.|+++|+++.-
T Consensus 147 ~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 147 EEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 34899999854433111 1268899999999999999764
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=72.41 Aligned_cols=71 Identities=8% Similarity=0.071 Sum_probs=59.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++.... +++++.+|+.+.+++
T Consensus 32 ~VLEIG~G~G~lt~~L~~~-------------~~~v~~vEid~~~~~~l~~~~~~~~-------~v~ii~~D~~~~~~~- 90 (258)
T PRK14896 32 PVLEIGPGKGALTDELAKR-------------AKKVYAIELDPRLAEFLRDDEIAAG-------NVEIIEGDALKVDLP- 90 (258)
T ss_pred eEEEEeCccCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHhccCC-------CEEEEEeccccCCch-
Confidence 5899999999999999886 3589999999999999998875422 899999999887654
Q ss_pred CCeeEEEEccccc
Q psy890 82 DSYSAYTIAFGIR 94 (131)
Q Consensus 82 ~~~D~i~~~~~l~ 94 (131)
.||.|+++...+
T Consensus 91 -~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 -EFNKVVSNLPYQ 102 (258)
T ss_pred -hceEEEEcCCcc
Confidence 479998876544
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.97 E-value=6.5e-09 Score=75.67 Aligned_cols=96 Identities=14% Similarity=0.093 Sum_probs=70.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. +++++..|+.+.
T Consensus 295 ~vLDl~cG~G~~sl~la~~-------------~~~V~~vE~~~~av~~a~~n~~~~~~~-----nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 295 LVVDAYCGVGTFTLPLAKQ-------------AKSVVGIEVVPESVEKAQQNAELNGIA-----NVEFLAGTLETVLPKQ 356 (431)
T ss_pred EEEEcCCCcCHHHHHHHHh-------------CCEEEEEEcCHHHHHHHHHHHHHhCCC-----ceEEEeCCHHHHHHHH
Confidence 6899999999999998875 458999999999999999999877654 899999997653
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+....+||+|++.-.=.. -...++..+. .++|++.+++
T Consensus 357 ~~~~~~~D~vi~dPPr~G--~~~~~l~~l~-~l~~~~ivyv 394 (431)
T TIGR00479 357 PWAGQIPDVLLLDPPRKG--CAAEVLRTII-ELKPERIVYV 394 (431)
T ss_pred HhcCCCCCEEEECcCCCC--CCHHHHHHHH-hcCCCEEEEE
Confidence 123457999987433111 1234444444 4788877665
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.2e-09 Score=67.66 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=57.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||||.++...+.. +..+|+++|+++++++.++++.+... .++.|+..|+.+..
T Consensus 48 ~V~DlG~GTG~La~ga~~l------------Ga~~V~~vdiD~~a~ei~r~N~~~l~------g~v~f~~~dv~~~~--- 106 (198)
T COG2263 48 TVLDLGAGTGILAIGAALL------------GASRVLAVDIDPEALEIARANAEELL------GDVEFVVADVSDFR--- 106 (198)
T ss_pred EEEEcCCCcCHHHHHHHhc------------CCcEEEEEecCHHHHHHHHHHHHhhC------CceEEEEcchhhcC---
Confidence 5899999999998876554 35789999999999999999998732 27999999998865
Q ss_pred CCeeEEEEcccc
Q psy890 82 DSYSAYTIAFGI 93 (131)
Q Consensus 82 ~~~D~i~~~~~l 93 (131)
..+|.++++-.+
T Consensus 107 ~~~dtvimNPPF 118 (198)
T COG2263 107 GKFDTVIMNPPF 118 (198)
T ss_pred CccceEEECCCC
Confidence 457788876444
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-09 Score=72.74 Aligned_cols=103 Identities=15% Similarity=0.115 Sum_probs=76.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||.+|+|.|..+..+++... ..+++++|+++.+++.+++.+.... +.+ ++++++..|.... .
T Consensus 106 ~VLiiGgG~G~~~re~l~~~~-----------~~~v~~VEiD~~vv~lar~~~~~~~~~~~d---prv~v~~~Da~~~L~ 171 (336)
T PLN02823 106 TVFIMGGGEGSTAREVLRHKT-----------VEKVVMCDIDQEVVDFCRKHLTVNREAFCD---KRLELIINDARAELE 171 (336)
T ss_pred EEEEECCCchHHHHHHHhCCC-----------CCeEEEEECCHHHHHHHHHhcccccccccC---CceEEEEChhHHHHh
Confidence 589999999999988887632 5689999999999999999876421 222 4899999996664 2
Q ss_pred CCCCCeeEEEEcccccc--c-c---CHHHHHH-HHHHhccCCcEEEE
Q psy890 79 IESDSYSAYTIAFGIRN--V-T---RIDKALS-EAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~--~-~---~~~~~l~-~~~~~L~p~G~l~~ 118 (131)
...++||+|++-..-.. . + --..++. .+++.|+|||++++
T Consensus 172 ~~~~~yDvIi~D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~ 218 (336)
T PLN02823 172 KRDEKFDVIIGDLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVT 218 (336)
T ss_pred hCCCCccEEEecCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEE
Confidence 33568999998632110 1 1 0245677 88999999999865
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-08 Score=65.85 Aligned_cols=104 Identities=11% Similarity=-0.030 Sum_probs=73.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
++||++||+|.++..++.. ...+++++|.++.+++.++++++..+..+ +++++..|+.+. . .
T Consensus 52 ~vLDLfaGsG~lglea~sr------------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~----~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 52 HLLDVFAGSGLLGEEALSR------------GAKVAFLEEDDRKANQTLKENLALLKSGE----QAEVVRNSALRALKFL 115 (189)
T ss_pred EEEEecCCCcHHHHHHHhC------------CCCEEEEEeCCHHHHHHHHHHHHHhCCcc----cEEEEehhHHHHHHHh
Confidence 5899999999999988886 24589999999999999999998876653 788999997543 1 1
Q ss_pred -C-CCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccC
Q psy890 80 -E-SDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 -~-~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~ 123 (131)
. ...||+|+..-.... ......+..+. .+|+++|.+ ++|+..
T Consensus 116 ~~~~~~~dvv~~DPPy~~-~~~~~~l~~l~~~~~l~~~~ii-v~E~~~ 161 (189)
T TIGR00095 116 AKKPTFDNVIYLDPPFFN-GALQALLELCENNWILEDTVLI-VVEEDR 161 (189)
T ss_pred hccCCCceEEEECcCCCC-CcHHHHHHHHHHCCCCCCCeEE-EEEecC
Confidence 1 234788888543322 22344444443 357777766 456554
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=9.4e-09 Score=71.86 Aligned_cols=80 Identities=10% Similarity=-0.112 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEe-cccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLE-ANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~d~~~~~- 78 (131)
++||||||+|.+...++.... ..+++++|+++.+++.|++++... .+.. ++.+.. .+.....
T Consensus 117 ~vLDIGtGag~I~~lLa~~~~-----------~~~~~atDId~~Al~~A~~Nv~~Np~l~~----~I~~~~~~~~~~i~~ 181 (321)
T PRK11727 117 RVLDIGVGANCIYPLIGVHEY-----------GWRFVGSDIDPQALASAQAIISANPGLNG----AIRLRLQKDSKAIFK 181 (321)
T ss_pred eEEEecCCccHHHHHHHhhCC-----------CCEEEEEeCCHHHHHHHHHHHHhccCCcC----cEEEEEccchhhhhh
Confidence 689999999988777766543 578999999999999999999987 5664 777753 3332221
Q ss_pred ---CCCCCeeEEEEccccccc
Q psy890 79 ---IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~ 96 (131)
.+.+.||+|+|+-.++.-
T Consensus 182 ~i~~~~~~fDlivcNPPf~~s 202 (321)
T PRK11727 182 GIIHKNERFDATLCNPPFHAS 202 (321)
T ss_pred cccccCCceEEEEeCCCCcCc
Confidence 235689999998766543
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-09 Score=73.91 Aligned_cols=76 Identities=11% Similarity=0.141 Sum_probs=59.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+++|.+||.|..+..+++..+ +..+|+++|.+++++..+++++.. . .+++++..++.++. .
T Consensus 22 ~vlD~TlG~GGhS~~il~~~~----------~~g~VigiD~D~~al~~ak~~L~~---~----~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 22 IYVDGTFGGGGHSRAILERLG----------PKGRLIAIDRDPDAIAAAKDRLKP---F----GRFTLVHGNFSNLKEVL 84 (296)
T ss_pred EEEEeCcCChHHHHHHHHhCC----------CCCEEEEEcCCHHHHHHHHHhhcc---C----CcEEEEeCCHHHHHHHH
Confidence 589999999999999999864 367899999999999999988755 1 28899999877653 1
Q ss_pred CC--CCeeEEEEccccc
Q psy890 80 ES--DSYSAYTIAFGIR 94 (131)
Q Consensus 80 ~~--~~~D~i~~~~~l~ 94 (131)
+. .++|.|++..++.
T Consensus 85 ~~~~~~vDgIl~DLGvS 101 (296)
T PRK00050 85 AEGLGKVDGILLDLGVS 101 (296)
T ss_pred HcCCCccCEEEECCCcc
Confidence 11 2688888755543
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-09 Score=73.67 Aligned_cols=98 Identities=19% Similarity=0.133 Sum_probs=77.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||++||+|..+..++...+ ..+++++|+++.+++.++++++.++.. ++.+...|+...-...
T Consensus 60 ~vLDl~aGsG~~~l~~a~~~~-----------~~~V~a~Din~~Av~~a~~N~~~N~~~-----~~~v~~~Da~~~l~~~ 123 (382)
T PRK04338 60 SVLDALSASGIRGIRYALETG-----------VEKVTLNDINPDAVELIKKNLELNGLE-----NEKVFNKDANALLHEE 123 (382)
T ss_pred EEEECCCcccHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-----ceEEEhhhHHHHHhhc
Confidence 689999999999999987643 458999999999999999999877654 5678888876542114
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.||+|++.-. .....++....+.++++|++++.
T Consensus 124 ~~fD~V~lDP~----Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 124 RKFDVVDIDPF----GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CCCCEEEECCC----CCcHHHHHHHHHHhcCCCEEEEE
Confidence 56999988532 23456777777888999999886
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.2e-09 Score=73.62 Aligned_cols=97 Identities=10% Similarity=0.014 Sum_probs=70.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
++||++||+|.++..++.. ..+++++|+++.+++.++++.+..+.. +++++..|+.+... .
T Consensus 236 ~vLDL~cG~G~~~l~la~~-------------~~~v~~vE~~~~av~~a~~N~~~~~~~-----~~~~~~~d~~~~~~~~ 297 (374)
T TIGR02085 236 QMWDLFCGVGGFGLHCAGP-------------DTQLTGIEIESEAIACAQQSAQMLGLD-----NLSFAALDSAKFATAQ 297 (374)
T ss_pred EEEEccCCccHHHHHHhhc-------------CCeEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHHhc
Confidence 5899999999999988753 568999999999999999999887653 79999999876421 1
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||+|++.-.-.. -....+..+. .++|++++++.
T Consensus 298 ~~~~D~vi~DPPr~G--~~~~~l~~l~-~~~p~~ivyvs 333 (374)
T TIGR02085 298 MSAPELVLVNPPRRG--IGKELCDYLS-QMAPKFILYSS 333 (374)
T ss_pred CCCCCEEEECCCCCC--CcHHHHHHHH-hcCCCeEEEEE
Confidence 245999988643211 1133344443 47888777663
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1663|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.1e-08 Score=66.19 Aligned_cols=100 Identities=18% Similarity=0.172 Sum_probs=83.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+.||+|.=||..+..++..++ ...+++.+|++++.++.+.+..+..++.. +++++.++..+.
T Consensus 76 ~~lelGvfTGySaL~~Alalp----------~dGrv~a~eid~~~~~~~~~~~k~agv~~----KI~~i~g~a~esLd~l 141 (237)
T KOG1663|consen 76 RTLELGVFTGYSALAVALALP----------EDGRVVAIEIDADAYEIGLELVKLAGVDH----KITFIEGPALESLDEL 141 (237)
T ss_pred eEEEEecccCHHHHHHHHhcC----------CCceEEEEecChHHHHHhHHHHHhccccc----eeeeeecchhhhHHHH
Confidence 469999999999999999987 57899999999999999999998888876 899998886553
Q ss_pred --CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 --PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
....++||.++.-. +-.+....+.++.+++++||++++
T Consensus 142 ~~~~~~~tfDfaFvDa---dK~nY~~y~e~~l~Llr~GGvi~~ 181 (237)
T KOG1663|consen 142 LADGESGTFDFAFVDA---DKDNYSNYYERLLRLLRVGGVIVV 181 (237)
T ss_pred HhcCCCCceeEEEEcc---chHHHHHHHHHHHhhcccccEEEE
Confidence 13457899998743 333455788999999999999987
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.6e-09 Score=73.67 Aligned_cols=109 Identities=17% Similarity=0.164 Sum_probs=85.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+|++-|=||.++...+.. +..+++.+|.|...++.++++++.+++.. .+..|++.|..++-
T Consensus 220 rvLNlFsYTGgfSv~Aa~g------------GA~~vt~VD~S~~al~~a~~N~~LNg~~~---~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 220 RVLNLFSYTGGFSVHAALG------------GASEVTSVDLSKRALEWARENAELNGLDG---DRHRFIVGDVFKWLRKA 284 (393)
T ss_pred eEEEecccCcHHHHHHHhc------------CCCceEEEeccHHHHHHHHHHHHhcCCCc---cceeeehhhHHHHHHHH
Confidence 4899999999998877764 24499999999999999999999988765 36899999977652
Q ss_pred -CCCCCeeEEEEcc-ccc--------cccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 -IESDSYSAYTIAF-GIR--------NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 -~~~~~~D~i~~~~-~l~--------~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
-...+||+|++-- .+. -..+....+..+.++|+|||.+++...+..-
T Consensus 285 ~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~~ 341 (393)
T COG1092 285 ERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRHF 341 (393)
T ss_pred HhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCcc
Confidence 3346899999821 111 1225678889999999999999987766543
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=3.7e-09 Score=72.59 Aligned_cols=70 Identities=16% Similarity=0.119 Sum_probs=56.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. . +++++.+|+.+++++.
T Consensus 45 ~VLEiG~G~G~lt~~L~~~-------------~~~v~avE~d~~~~~~~~~~~~~-~-------~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 45 NVLEIGPGLGALTEPLLER-------------AAKVTAVEIDRDLAPILAETFAE-D-------NLTIIEGDALKVDLSE 103 (272)
T ss_pred eEEEeCCCccHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHhhcc-C-------ceEEEEChhhcCCHHH
Confidence 6899999999999999887 34899999999999999887643 2 8999999998876543
Q ss_pred CCeeEEEEccc
Q psy890 82 DSYSAYTIAFG 92 (131)
Q Consensus 82 ~~~D~i~~~~~ 92 (131)
-.++.|+++..
T Consensus 104 ~~~~~vv~NlP 114 (272)
T PRK00274 104 LQPLKVVANLP 114 (272)
T ss_pred cCcceEEEeCC
Confidence 22477777543
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=71.10 Aligned_cols=102 Identities=24% Similarity=0.251 Sum_probs=80.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEE-ecccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL-EANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~~~ 80 (131)
.+||--||||.+.+.+... +.+++|.|++..|+..++.|++..+.+ ...+. ..|+..+|++
T Consensus 200 ~vlDPFcGTGgiLiEagl~-------------G~~viG~Did~~mv~gak~Nl~~y~i~-----~~~~~~~~Da~~lpl~ 261 (347)
T COG1041 200 LVLDPFCGTGGILIEAGLM-------------GARVIGSDIDERMVRGAKINLEYYGIE-----DYPVLKVLDATNLPLR 261 (347)
T ss_pred EeecCcCCccHHHHhhhhc-------------CceEeecchHHHHHhhhhhhhhhhCcC-----ceeEEEecccccCCCC
Confidence 5899999999988776554 789999999999999999999988765 34444 4499999988
Q ss_pred CCCeeEEEEc--cccccc---cC----HHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIA--FGIRNV---TR----IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~--~~l~~~---~~----~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..++|.|++- ++-... .. ...+++.+.+.|++||++.++-.
T Consensus 262 ~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 262 DNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 8889999983 332221 11 46789999999999999988654
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-08 Score=66.53 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=71.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+.||-|.++..+++... ..+|+++|+++.+++.++++++.+++.. ++..+..|..++.. .
T Consensus 104 ~VlD~faGIG~f~l~~ak~~~-----------~~~V~A~d~Np~a~~~L~~Ni~lNkv~~----~i~~~~~D~~~~~~-~ 167 (200)
T PF02475_consen 104 VVLDMFAGIGPFSLPIAKHGK-----------AKRVYAVDLNPDAVEYLKENIRLNKVEN----RIEVINGDAREFLP-E 167 (200)
T ss_dssp EEEETT-TTTTTHHHHHHHT------------SSEEEEEES-HHHHHHHHHHHHHTT-TT----TEEEEES-GGG----T
T ss_pred EEEEccCCccHHHHHHhhhcC-----------ccEEEEecCCHHHHHHHHHHHHHcCCCC----eEEEEcCCHHHhcC-c
Confidence 689999999999999988533 6789999999999999999999988875 78999999887754 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
..+|.|+++..- ....+|..+.+.+++||.+-
T Consensus 168 ~~~drvim~lp~----~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 168 GKFDRVIMNLPE----SSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp T-EEEEEE--TS----SGGGGHHHHHHHEEEEEEEE
T ss_pred cccCEEEECChH----HHHHHHHHHHHHhcCCcEEE
Confidence 789999886532 22356777889999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-09 Score=72.57 Aligned_cols=74 Identities=15% Similarity=0.168 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+..+ +++++..|+.+.++
T Consensus 39 ~VLEIG~G~G~LT~~Ll~~-------------~~~V~avEiD~~li~~l~~~~~~~~~~~----~v~ii~~Dal~~~~-- 99 (294)
T PTZ00338 39 TVLEIGPGTGNLTEKLLQL-------------AKKVIAIEIDPRMVAELKKRFQNSPLAS----KLEVIEGDALKTEF-- 99 (294)
T ss_pred EEEEecCchHHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHHHHhcCCCC----cEEEEECCHhhhcc--
Confidence 5899999999999998875 4579999999999999999887654332 89999999887654
Q ss_pred CCeeEEEEccccc
Q psy890 82 DSYSAYTIAFGIR 94 (131)
Q Consensus 82 ~~~D~i~~~~~l~ 94 (131)
..||.|+++...+
T Consensus 100 ~~~d~VvaNlPY~ 112 (294)
T PTZ00338 100 PYFDVCVANVPYQ 112 (294)
T ss_pred cccCEEEecCCcc
Confidence 3589888765443
|
|
| >KOG3045|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.3e-09 Score=69.58 Aligned_cols=85 Identities=22% Similarity=0.276 Sum_probs=68.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|-|+|||.+.++. . ..-.|+.+|+-. .+-.++..|+.+.|.++
T Consensus 183 vIaD~GCGEakiA~----~------------~~~kV~SfDL~a--------------------~~~~V~~cDm~~vPl~d 226 (325)
T KOG3045|consen 183 VIADFGCGEAKIAS----S------------ERHKVHSFDLVA--------------------VNERVIACDMRNVPLED 226 (325)
T ss_pred EEEecccchhhhhh----c------------cccceeeeeeec--------------------CCCceeeccccCCcCcc
Confidence 58899999987654 1 134689999732 15567889999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++.|++++...+. ..++..++.++.|+|++||.++++|...
T Consensus 227 ~svDvaV~CLSLM-gtn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 227 ESVDVAVFCLSLM-GTNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred CcccEEEeeHhhh-cccHHHHHHHHHHHhccCceEEEEehhh
Confidence 9999999876654 3578889999999999999999998653
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.3e-08 Score=68.06 Aligned_cols=70 Identities=16% Similarity=0.148 Sum_probs=55.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..+++. ...++++|+++.++..++++..... +++++..|+.+.++.
T Consensus 32 ~VLEiG~G~G~lt~~L~~~-------------~~~v~~iE~d~~~~~~l~~~~~~~~-------~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 32 VVLEIGPGLGALTEPLLKR-------------AKKVTAIEIDPRLAEILRKLLSLYE-------RLEVIEGDALKVDLP- 90 (253)
T ss_pred EEEEeCCCCCHHHHHHHHh-------------CCcEEEEECCHHHHHHHHHHhCcCC-------cEEEEECchhcCChh-
Confidence 6899999999999999887 3469999999999999988775422 899999999887654
Q ss_pred CCee---EEEEcccc
Q psy890 82 DSYS---AYTIAFGI 93 (131)
Q Consensus 82 ~~~D---~i~~~~~l 93 (131)
.+| +|+++...
T Consensus 91 -~~d~~~~vvsNlPy 104 (253)
T TIGR00755 91 -DFPKQLKVVSNLPY 104 (253)
T ss_pred -HcCCcceEEEcCCh
Confidence 455 66665443
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.9e-09 Score=66.79 Aligned_cols=107 Identities=14% Similarity=0.155 Sum_probs=73.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~- 78 (131)
.++||+-||||.++.+.+.+ +..+++.+|.++..+...+++++..+..+ +++.+..|.... .
T Consensus 44 ~~vLDLFaGSGalGlEALSR------------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~----~~~v~~~d~~~~l~~ 107 (183)
T PF03602_consen 44 ARVLDLFAGSGALGLEALSR------------GAKSVVFVEKNRKAIKIIKKNLEKLGLED----KIRVIKGDAFKFLLK 107 (183)
T ss_dssp -EEEETT-TTSHHHHHHHHT------------T-SEEEEEES-HHHHHHHHHHHHHHT-GG----GEEEEESSHHHHHHH
T ss_pred CeEEEcCCccCccHHHHHhc------------CCCeEEEEECCHHHHHHHHHHHHHhCCCc----ceeeeccCHHHHHHh
Confidence 36899999999999987766 45789999999999999999999877653 688888885432 1
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccCC
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~~ 124 (131)
....+||+|++--...........+..+. .+|+++|.+++ |+...
T Consensus 108 ~~~~~~~fDiIflDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii~-E~~~~ 156 (183)
T PF03602_consen 108 LAKKGEKFDIIFLDPPYAKGLYYEELLELLAENNLLNEDGLIII-EHSKK 156 (183)
T ss_dssp HHHCTS-EEEEEE--STTSCHHHHHHHHHHHHTTSEEEEEEEEE-EEETT
T ss_pred hcccCCCceEEEECCCcccchHHHHHHHHHHHCCCCCCCEEEEE-EecCC
Confidence 24678999998533222111366666666 78898887754 66544
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.5e-08 Score=65.35 Aligned_cols=106 Identities=14% Similarity=0.081 Sum_probs=86.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~- 79 (131)
+||||.||.|+....++...+. ...++...|+|+.-++..++.++..++.+ -++|...|+.+.. +
T Consensus 138 rIlDIAaG~GRYvlDal~~~~~---------~~~~i~LrDys~~Nv~~g~~li~~~gL~~----i~~f~~~dAfd~~~l~ 204 (311)
T PF12147_consen 138 RILDIAAGHGRYVLDALEKHPE---------RPDSILLRDYSPINVEKGRALIAERGLED----IARFEQGDAFDRDSLA 204 (311)
T ss_pred EEEEeccCCcHHHHHHHHhCCC---------CCceEEEEeCCHHHHHHHHHHHHHcCCcc----ceEEEecCCCCHhHhh
Confidence 6899999999998888877652 13689999999999999999999999884 5699999977642 1
Q ss_pred -CCCCeeEEEEccccccccCH---HHHHHHHHHhccCCcEEEEEe
Q psy890 80 -ESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 -~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~p~G~l~~~~ 120 (131)
-....++++++.....+++- ...+..+.+.+.|||+++.+-
T Consensus 205 ~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 205 ALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred ccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 13457999999998888863 456899999999999998753
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG3178|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.1e-08 Score=69.11 Aligned_cols=98 Identities=13% Similarity=0.104 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
..+|+|.|.|+.+..++.+. .++-+++.+...+..+...+. . .+..+.+|..+. .|
T Consensus 180 ~avDvGgGiG~v~k~ll~~f-------------p~ik~infdlp~v~~~a~~~~-~--------gV~~v~gdmfq~-~P- 235 (342)
T KOG3178|consen 180 VAVDVGGGIGRVLKNLLSKY-------------PHIKGINFDLPFVLAAAPYLA-P--------GVEHVAGDMFQD-TP- 235 (342)
T ss_pred eEEEcCCcHhHHHHHHHHhC-------------CCCceeecCHHHHHhhhhhhc-C--------Ccceeccccccc-CC-
Confidence 57999999999999998864 357777777777777766653 2 466677775554 22
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+-|+|++.|++|+++| ..++|+++...|+|||.++++|.--+
T Consensus 236 -~~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 236 -KGDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTP 279 (342)
T ss_pred -CcCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 3479999999999985 56999999999999999999997444
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-09 Score=78.67 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=64.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEE---eCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVA---DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
++||+|||+|.++..++++ +.....+ |..+.+++.|.++ +++ ..+-......+|
T Consensus 120 ~~LDvGcG~aSF~a~l~~r-------------~V~t~s~a~~d~~~~qvqfaleR----Gvp------a~~~~~~s~rLP 176 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLER-------------NVTTMSFAPNDEHEAQVQFALER----GVP------AMIGVLGSQRLP 176 (506)
T ss_pred EEEeccceeehhHHHHhhC-------------CceEEEcccccCCchhhhhhhhc----Ccc------hhhhhhcccccc
Confidence 4799999999999888775 2222222 3334455555433 211 111122346778
Q ss_pred CCCCCeeEEEEccccccc-cCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~-~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..+||+|.|+.++..+ ++-...|-++.|+|+|||+++..
T Consensus 177 fp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGGyfv~S 218 (506)
T PF03141_consen 177 FPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGGYFVLS 218 (506)
T ss_pred CCccchhhhhcccccccchhcccceeehhhhhhccCceEEec
Confidence 999999999999987555 44456899999999999998763
|
; GO: 0008168 methyltransferase activity |
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-08 Score=70.58 Aligned_cols=107 Identities=10% Similarity=0.144 Sum_probs=82.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
.+|||+++++|.-+..++..++ ....+++.|+++.-+...+++++..+.. ++.+...|...+. .
T Consensus 115 ~~VLD~CAAPGgKTt~la~~l~----------~~g~lvA~D~~~~R~~~L~~nl~r~G~~-----nv~v~~~D~~~~~~~ 179 (470)
T PRK11933 115 QRVLDMAAAPGSKTTQIAALMN----------NQGAIVANEYSASRVKVLHANISRCGVS-----NVALTHFDGRVFGAA 179 (470)
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCchhhhhhh
Confidence 3699999999999999999875 3568999999999999999999988765 7788888876553 2
Q ss_pred CCCCeeEEEEcccccc------ccC----------------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRN------VTR----------------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~------~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
....||.|++-..+.. -++ -.++|.+..++|||||+++...++
T Consensus 180 ~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 180 LPETFDAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred chhhcCeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 2357999996333221 111 156788899999999999876555
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.2e-08 Score=67.88 Aligned_cols=105 Identities=15% Similarity=0.204 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-+|.|.|..+..+++..+ ..+++++|+++.+++.+++-+.... ..+ ++++++..|....-
T Consensus 79 ~VLiiGgG~G~~~~ell~~~~-----------~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d---~r~~i~~~Dg~~~l~ 144 (246)
T PF01564_consen 79 RVLIIGGGDGGTARELLKHPP-----------VESITVVEIDPEVVELARKYFPEFSEGLDD---PRVRIIIGDGRKFLK 144 (246)
T ss_dssp EEEEEESTTSHHHHHHTTSTT------------SEEEEEES-HHHHHHHHHHTHHHHTTGGS---TTEEEEESTHHHHHH
T ss_pred ceEEEcCCChhhhhhhhhcCC-----------cceEEEEecChHHHHHHHHhchhhccccCC---CceEEEEhhhHHHHH
Confidence 589999999999998887642 5789999999999999998776532 222 48999999966542
Q ss_pred CCCC-CeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESD-SYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~-~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+ +||+|+.-..-...+. -..+++.+++.|+|+|++++-.
T Consensus 145 ~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 145 ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 2233 8999998433221111 2688999999999999998743
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-08 Score=68.15 Aligned_cols=105 Identities=19% Similarity=0.160 Sum_probs=87.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+-+|-|.+++.++..- ..+|+++|+|+.+++..+++++.+++.. .+..+.+|........
T Consensus 191 ~V~DmFAGVGpfsi~~Ak~g------------~~~V~A~diNP~A~~~L~eNi~LN~v~~----~v~~i~gD~rev~~~~ 254 (341)
T COG2520 191 TVLDMFAGVGPFSIPIAKKG------------RPKVYAIDINPDAVEYLKENIRLNKVEG----RVEPILGDAREVAPEL 254 (341)
T ss_pred EEEEccCCcccchhhhhhcC------------CceEEEEecCHHHHHHHHHHHHhcCccc----eeeEEeccHHHhhhcc
Confidence 68999999999999998872 4459999999999999999999988875 6899999998876555
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
..+|.|+++..- ....++....+.++++|.+.+.+......
T Consensus 255 ~~aDrIim~~p~----~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 255 GVADRIIMGLPK----SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred ccCCEEEeCCCC----cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 789999987543 44667788888899999998877665443
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.6e-08 Score=66.62 Aligned_cols=85 Identities=18% Similarity=0.095 Sum_probs=55.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH-HHHHhhhccCCCCCCCce-eEEecccc----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV-GEQRARDLFKVPVPNPRL-RFLEANAE---- 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~d~~---- 75 (131)
++||+|||+|.++..+++. +..+++++|+++.++.. .+++. ++ .+...|+.
T Consensus 78 ~vlDiG~gtG~~t~~l~~~------------ga~~v~avD~~~~~l~~~l~~~~-----------~v~~~~~~ni~~~~~ 134 (228)
T TIGR00478 78 IVLDVGSSTGGFTDCALQK------------GAKEVYGVDVGYNQLAEKLRQDE-----------RVKVLERTNIRYVTP 134 (228)
T ss_pred EEEEcccCCCHHHHHHHHc------------CCCEEEEEeCCHHHHHHHHhcCC-----------CeeEeecCCcccCCH
Confidence 6899999999999988886 25689999999988775 22221 21 12222222
Q ss_pred -cCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 76 -ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 76 -~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+....-..+|+++.+..+ .+..+.+.|+| |.+++
T Consensus 135 ~~~~~d~~~~DvsfiS~~~--------~l~~i~~~l~~-~~~~~ 169 (228)
T TIGR00478 135 ADIFPDFATFDVSFISLIS--------ILPELDLLLNP-NDLTL 169 (228)
T ss_pred hHcCCCceeeeEEEeehHh--------HHHHHHHHhCc-CeEEE
Confidence 221122357877765443 37788888999 76654
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=68.43 Aligned_cols=109 Identities=19% Similarity=0.218 Sum_probs=76.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+||++-|=||.++...+.. +..+++.+|.|..+++.+++++..+++.. .+++++..|+.+. .
T Consensus 126 rvLnlFsYTGgfsv~Aa~g------------GA~~v~~VD~S~~al~~a~~N~~lNg~~~---~~~~~~~~Dvf~~l~~~ 190 (286)
T PF10672_consen 126 RVLNLFSYTGGFSVAAAAG------------GAKEVVSVDSSKRALEWAKENAALNGLDL---DRHRFIQGDVFKFLKRL 190 (286)
T ss_dssp EEEEET-TTTHHHHHHHHT------------TESEEEEEES-HHHHHHHHHHHHHTT-CC---TCEEEEES-HHHHHHHH
T ss_pred ceEEecCCCCHHHHHHHHC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCc---cceEEEecCHHHHHHHH
Confidence 6899999999998876653 34689999999999999999999887653 2789999997653 1
Q ss_pred CCCCCeeEEEEccc-c--cc---ccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 IESDSYSAYTIAFG-I--RN---VTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 ~~~~~~D~i~~~~~-l--~~---~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
-...+||+||+--. + .. ..+....+..+.++|+|||.++++..+...
T Consensus 191 ~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i 243 (286)
T PF10672_consen 191 KKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHI 243 (286)
T ss_dssp HHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS
T ss_pred hcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 12468999998211 1 11 125567888899999999999887766543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.6e-09 Score=68.55 Aligned_cols=104 Identities=20% Similarity=0.253 Sum_probs=79.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
++||.+.|-|+.++..++. +..+|+-++.+++.++.+.-|.-+.++.+ ..++++.+|..+. .+
T Consensus 137 rVLDtC~GLGYtAi~a~~r------------GA~~VitvEkdp~VLeLa~lNPwSr~l~~---~~i~iilGD~~e~V~~~ 201 (287)
T COG2521 137 RVLDTCTGLGYTAIEALER------------GAIHVITVEKDPNVLELAKLNPWSRELFE---IAIKIILGDAYEVVKDF 201 (287)
T ss_pred EeeeeccCccHHHHHHHHc------------CCcEEEEEeeCCCeEEeeccCCCCccccc---cccEEecccHHHHHhcC
Confidence 5899999999999988886 34599999999999999987766555443 2678999997765 47
Q ss_pred CCCCeeEEEEc---cccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIA---FGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~---~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+++||.|+-- +++..----..+..+++|+|+|||+++..-
T Consensus 202 ~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv 245 (287)
T COG2521 202 DDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV 245 (287)
T ss_pred CccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe
Confidence 88999999642 111111123688999999999999998753
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.80 E-value=5.2e-08 Score=67.03 Aligned_cols=107 Identities=9% Similarity=0.049 Sum_probs=70.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|+|+|..+-.+...++ ...+++++|.|+.|++.++.......... ...+......+ ..+-
T Consensus 36 ~vLD~GsGpGta~wAa~~~~~----------~~~~~~~vd~s~~~~~l~~~l~~~~~~~~----~~~~~~~~~~~-~~~~ 100 (274)
T PF09243_consen 36 SVLDFGSGPGTALWAAREVWP----------SLKEYTCVDRSPEMLELAKRLLRAGPNNR----NAEWRRVLYRD-FLPF 100 (274)
T ss_pred eEEEecCChHHHHHHHHHHhc----------CceeeeeecCCHHHHHHHHHHHhcccccc----cchhhhhhhcc-cccC
Confidence 699999999987776666665 25689999999999999988776543211 11111111111 1111
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
...|+|+++++|..+++ +..++.++-+.+++ +++++|.+.+.
T Consensus 101 ~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~ 144 (274)
T PF09243_consen 101 PPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA 144 (274)
T ss_pred CCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence 23499999999988875 34555555555544 89999987654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=66.45 Aligned_cols=107 Identities=12% Similarity=-0.053 Sum_probs=76.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.|+|+|||+|.-+..+++.+.... ....++.+|+|.++++.+.+++.....+. -.+.-+.+|+.+.
T Consensus 79 ~lIELGsG~~~Kt~~LL~aL~~~~-------~~~~Y~plDIS~~~L~~a~~~L~~~~~p~---l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 79 MLVELGSGNLRKVGILLEALERQK-------KSVDYYALDVSRSELQRTLAELPLGNFSH---VRCAGLLGTYDDGLAWL 148 (319)
T ss_pred EEEEECCCchHHHHHHHHHHHhcC-------CCceEEEEECCHHHHHHHHHhhhhccCCC---eEEEEEEecHHHHHhhc
Confidence 589999999999999988875211 24689999999999999999987333321 0344577877553
Q ss_pred CC--CCCCeeEEEEcc-cccccc--CHHHHHHHHHH-hccCCcEEEE
Q psy890 78 PI--ESDSYSAYTIAF-GIRNVT--RIDKALSEAYR-VLKPGGRFLC 118 (131)
Q Consensus 78 ~~--~~~~~D~i~~~~-~l~~~~--~~~~~l~~~~~-~L~p~G~l~~ 118 (131)
+- ......+++... .+.+++ +...+|.++++ .|+||+.+++
T Consensus 149 ~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 149 KRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred ccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 11 123356666554 677876 44588999999 9999999877
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.6e-07 Score=60.97 Aligned_cols=98 Identities=24% Similarity=0.237 Sum_probs=77.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+++|+|+|.|-=++.++-..+ ..+++.+|...--+...+......++. +++.+...+++ ....
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p-----------~~~~~LvEs~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~-~~~~ 113 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARP-----------DLQVTLVESVGKKVAFLKEVVRELGLS-----NVEVINGRAEE-PEYR 113 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-T-----------TSEEEEEESSHHHHHHHHHHHHHHT-S-----SEEEEES-HHH-TTTT
T ss_pred eEEecCCCCCChhHHHHHhCC-----------CCcEEEEeCCchHHHHHHHHHHHhCCC-----CEEEEEeeecc-cccC
Confidence 589999999988887777664 788999999997777777777776765 89999999888 4456
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|++.. +......+.-+.+.+++||++++.-
T Consensus 114 ~~fd~v~aRA----v~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 114 ESFDVVTARA----VAPLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp T-EEEEEEES----SSSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCccEEEeeh----hcCHHHHHHHHHHhcCCCCEEEEEc
Confidence 7899998865 4466778888999999999998864
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.7e-08 Score=65.06 Aligned_cols=93 Identities=16% Similarity=0.185 Sum_probs=70.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+||-+|.|.|...+.++++ + .+++.+|+++.+++.+++-++.. .+.+ ++++++.. +.+ .
T Consensus 75 ~VLIiGGGDGg~~REvLkh------------~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~D---pRv~l~~~-~~~--~ 135 (262)
T PRK00536 75 EVLIVDGFDLELAHQLFKY------------D-THVDFVQADEKILDSFISFFPHFHEVKNN---KNFTHAKQ-LLD--L 135 (262)
T ss_pred eEEEEcCCchHHHHHHHCc------------C-CeeEEEECCHHHHHHHHHHCHHHHHhhcC---CCEEEeeh-hhh--c
Confidence 5899999999999999997 2 38999999999999999966542 3444 47777652 111 1
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..++||+||+-.. ....+...+++.|+|||+++.
T Consensus 136 ~~~~fDVIIvDs~-----~~~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 136 DIKKYDLIICLQE-----PDIHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred cCCcCCEEEEcCC-----CChHHHHHHHHhcCCCcEEEE
Confidence 2367999998632 335778899999999999965
|
|
| >KOG2915|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=63.29 Aligned_cols=95 Identities=13% Similarity=0.036 Sum_probs=82.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|+|-|.|+|.++-.+++.+. +-.+++-+|..+.-.+++.+.++..++.+ ++.+..-|+....+.
T Consensus 108 vV~EsGTGSGSlShaiaraV~----------ptGhl~tfefH~~Ra~ka~eeFr~hgi~~----~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 108 VVLESGTGSGSLSHAIARAVA----------PTGHLYTFEFHETRAEKALEEFREHGIGD----NVTVTHRDVCGSGFLI 173 (314)
T ss_pred EEEecCCCcchHHHHHHHhhC----------cCcceEEEEecHHHHHHHHHHHHHhCCCc----ceEEEEeecccCCccc
Confidence 689999999999999999986 57899999999999999999999999886 999999998876543
Q ss_pred -CCCeeEEEEccccccccCHHHHHHHHHHhccCCcE
Q psy890 81 -SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~ 115 (131)
...+|.|+. .++.+..++..+.++||.+|.
T Consensus 174 ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 174 KSLKADAVFL-----DLPAPWEAIPHAAKILKDEGG 204 (314)
T ss_pred cccccceEEE-----cCCChhhhhhhhHHHhhhcCc
Confidence 457888866 677888888999999998875
|
|
| >KOG1269|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=3.1e-08 Score=70.32 Aligned_cols=105 Identities=21% Similarity=0.257 Sum_probs=88.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++++|||.|..+..+... ....++++|.++..+.++........+.. +..++..++.+.++++
T Consensus 113 ~~~~~~~g~~~~~~~i~~f------------~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~----k~~~~~~~~~~~~fed 176 (364)
T KOG1269|consen 113 KVLDVGTGVGGPSRYIAVF------------KKAGVVGLDNNAYEAFRANELAKKAYLDN----KCNFVVADFGKMPFED 176 (364)
T ss_pred cccccCcCcCchhHHHHHh------------ccCCccCCCcCHHHHHHHHHHHHHHHhhh----hcceehhhhhcCCCCc
Confidence 3678999999888777555 35789999999988888877766655553 5566888999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..||.+.+.-+.++.++....++++.+.++|||+++..++.
T Consensus 177 n~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 177 NTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred cccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHH
Confidence 99999999999999999999999999999999999876544
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-07 Score=63.19 Aligned_cols=103 Identities=17% Similarity=0.135 Sum_probs=76.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-------------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD------------------------- 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~------------------------- 56 (131)
+||-.|||.|+++..++.. +..+.+.|.|--|+-...-.+..
T Consensus 59 ~VLVPGsGLGRLa~Eia~~-------------G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dq 125 (270)
T PF07942_consen 59 RVLVPGSGLGRLAWEIAKL-------------GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQ 125 (270)
T ss_pred EEEEcCCCcchHHHHHhhc-------------cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHh
Confidence 5889999999999999886 67899999999886654332221
Q ss_pred ---ccCCC-------CCCCceeEEecccccCCCCC---CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 57 ---LFKVP-------VPNPRLRFLEANAEELPIES---DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 57 ---~~~~~-------~~~~~~~~~~~d~~~~~~~~---~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
...+| ....++....+|+.+...+. ++||.|++.+.+...++....+..+.++|||||+++
T Consensus 126 lr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 126 LRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred CCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhccCCEEE
Confidence 00000 00224555666666554333 689999999999988999999999999999999775
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.70 E-value=3e-07 Score=62.99 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=66.6
Q ss_pred ceeeeecccchhhHHHhhh-hcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh-hccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNY-VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-DLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|+.||+|+=-+|..++.. .. .+..++++|++++..+.+++.+. ..++.. +++|+..|....+.
T Consensus 123 rVaFIGSGPLPlT~i~la~~~~----------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~----~m~f~~~d~~~~~~ 188 (276)
T PF03059_consen 123 RVAFIGSGPLPLTSIVLAKQHG----------PGARVHNIDIDPEANELARRLVASDLGLSK----RMSFITADVLDVTY 188 (276)
T ss_dssp EEEEE---SS-HHHHHHH--HT----------T--EEEEEESSHHHHHHHHHHHH---HH-S----SEEEEES-GGGG-G
T ss_pred eEEEEcCCCcchHHHHHHHHhC----------CCCeEEEEeCCHHHHHHHHHHHhhcccccC----CeEEEecchhcccc
Confidence 5889999987666555443 22 25789999999999999998877 445543 89999999887655
Q ss_pred CCCCeeEEEEccccc-cccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~-~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.-..||+|+...... .-.+..+++.++.+.++||..+++-
T Consensus 189 dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 189 DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 556899998876654 3347889999999999999998775
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.5e-07 Score=69.77 Aligned_cols=115 Identities=13% Similarity=0.066 Sum_probs=78.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCC-------------------------------CCCCeEEEEeCCHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE-------------------------------HCAPHVTVADINRAMLDVG 50 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~-------------------------------~~~~~~~~~D~s~~~~~~~ 50 (131)
.++|.+||+|.+.+..+....+.+++.... ....+++|+|+++.++..+
T Consensus 193 ~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~~A 272 (702)
T PRK11783 193 PLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQAA 272 (702)
T ss_pred eEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHHHH
Confidence 589999999999888776533222221110 0124799999999999999
Q ss_pred HHHhhhccCCCCCCCceeEEecccccCCCC--CCCeeEEEEccccc-cc---cCHHHHHHHHHHhcc---CCcEEEEEe
Q psy890 51 EQRARDLFKVPVPNPRLRFLEANAEELPIE--SDSYSAYTIAFGIR-NV---TRIDKALSEAYRVLK---PGGRFLCLE 120 (131)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~~~l~-~~---~~~~~~l~~~~~~L~---p~G~l~~~~ 120 (131)
++++...++.+ .+.+...|+.+++.+ .++||+|+++-..- .+ .+......++.+.++ +|+.+++..
T Consensus 273 ~~N~~~~g~~~----~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt 347 (702)
T PRK11783 273 RKNARRAGVAE----LITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHHcCCCc----ceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 99999988775 789999998887533 35799999974431 11 233344444444443 888776654
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2e-07 Score=66.29 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=50.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
.+||++||+|.++..+++. ..+++++|+++++++.++++....+.. +++++..|+.+.
T Consensus 200 ~vlDl~~G~G~~sl~la~~-------------~~~v~~vE~~~~av~~a~~n~~~~~~~-----~v~~~~~d~~~~ 257 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQN-------------FRRVLATEIAKPSVNAAQYNIAANNID-----NVQIIRMSAEEF 257 (353)
T ss_pred cEEEEeccccHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEEcCHHHH
Confidence 4899999999999988776 358999999999999999999887754 789999997663
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-06 Score=53.99 Aligned_cols=105 Identities=28% Similarity=0.334 Sum_probs=71.5
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPIE 80 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~ 80 (131)
++|+|||+|... .+..... ....++++|.++.++...+..... .... .+.+...+... .++.
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~ 115 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGG----------RGAYVVGVDLSPEMLALARARAEG-AGLG----LVDFVVADALGGVLPFE 115 (257)
T ss_pred eEEecCCcCHHH-HHHHhCC----------CCceEEEEeCCHHHHHHHHhhhhh-cCCC----ceEEEEeccccCCCCCC
Confidence 799999999977 2323211 124788899999999885544433 2110 15777777665 5665
Q ss_pred C-CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 S-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
. ..||++ ......+.......+.++.+.++|+|.+++......
T Consensus 116 ~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 116 DSASFDLV-ISLLVLHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred CCCceeEE-eeeeehhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 5 489999 544443333388899999999999999988766544
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.6e-07 Score=56.48 Aligned_cols=87 Identities=23% Similarity=0.273 Sum_probs=61.7
Q ss_pred eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--CCCCCeeEEEEccccccc------cC---HHHHHH
Q psy890 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNV------TR---IDKALS 104 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~------~~---~~~~l~ 104 (131)
+|+++|+.+++++..++++...+..+ +++++..+-+.+. .+.+++|.++.+.+.--- .. -..+++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~----~v~li~~sHe~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~ 76 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLED----RVTLILDSHENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKALE 76 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GS----GEEEEES-GGGGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCC----cEEEEECCHHHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHH
Confidence 58999999999999999999987764 8999998877764 333589999988663111 12 356788
Q ss_pred HHHHhccCCcEEEEEeccCCCc
Q psy890 105 EAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 105 ~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.+.+.|+|||++.++-+.+++.
T Consensus 77 ~al~lL~~gG~i~iv~Y~GH~g 98 (140)
T PF06962_consen 77 AALELLKPGGIITIVVYPGHPG 98 (140)
T ss_dssp HHHHHEEEEEEEEEEE--STCH
T ss_pred HHHHhhccCCEEEEEEeCCCCC
Confidence 8899999999999988877664
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.6e-07 Score=65.96 Aligned_cols=57 Identities=12% Similarity=0.119 Sum_probs=49.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.+||++||+|.++..+++. ..+++++|.++.+++.++++....+.. +++++..|+.+
T Consensus 209 ~vLDl~~G~G~~sl~la~~-------------~~~v~~vE~~~~ai~~a~~N~~~~~~~-----~v~~~~~d~~~ 265 (362)
T PRK05031 209 DLLELYCGNGNFTLALARN-------------FRRVLATEISKPSVAAAQYNIAANGID-----NVQIIRMSAEE 265 (362)
T ss_pred eEEEEeccccHHHHHHHhh-------------CCEEEEEECCHHHHHHHHHHHHHhCCC-----cEEEEECCHHH
Confidence 5899999999999988775 458999999999999999999887654 79999999765
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.8e-07 Score=65.92 Aligned_cols=99 Identities=14% Similarity=0.095 Sum_probs=78.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+.||+|..++..+.... ...++++.|+++..++.++++++..+.. +++++..|+...- ..
T Consensus 47 ~vLD~faGsG~rgir~a~e~~----------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-----~~~v~~~Da~~~l~~~ 111 (374)
T TIGR00308 47 NIADALSASGIRAIRYAHEIE----------GVREVFANDINPKAVESIKNNVEYNSVE-----NIEVPNEDAANVLRYR 111 (374)
T ss_pred EEEECCCchhHHHHHHHhhCC----------CCCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEchhHHHHHHHh
Confidence 689999999999999988742 2468999999999999999999877643 5788888877642 22
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...||+|...- . ..+..++..+.+.++++|.+.++
T Consensus 112 ~~~fDvIdlDP-f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 112 NRKFHVIDIDP-F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred CCCCCEEEeCC-C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 35699998743 1 24457888899999999999886
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG3420|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-08 Score=59.80 Aligned_cols=75 Identities=13% Similarity=0.094 Sum_probs=60.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+.++|+|||.|.++...... ....+.|+|+++++++.+.++.+...+ ++.+.+.|+.+..+.
T Consensus 50 kkl~DLgcgcGmLs~a~sm~------------~~e~vlGfDIdpeALEIf~rNaeEfEv------qidlLqcdildle~~ 111 (185)
T KOG3420|consen 50 KKLKDLGCGCGMLSIAFSMP------------KNESVLGFDIDPEALEIFTRNAEEFEV------QIDLLQCDILDLELK 111 (185)
T ss_pred cchhhhcCchhhhHHHhhcC------------CCceEEeeecCHHHHHHHhhchHHhhh------hhheeeeeccchhcc
Confidence 46899999999998554433 256799999999999999999887654 678888998887666
Q ss_pred CCCeeEEEEcccc
Q psy890 81 SDSYSAYTIAFGI 93 (131)
Q Consensus 81 ~~~~D~i~~~~~l 93 (131)
.+.||.++.+..+
T Consensus 112 ~g~fDtaviNppF 124 (185)
T KOG3420|consen 112 GGIFDTAVINPPF 124 (185)
T ss_pred CCeEeeEEecCCC
Confidence 7889999886554
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.2e-06 Score=53.80 Aligned_cols=93 Identities=12% Similarity=-0.019 Sum_probs=63.3
Q ss_pred Cceeeeecccch-hhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 1 MYILFYLVFPGD-IAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+++||+|||+|. .+..+.+. +.+|+++|+++..++.++++ .+.++..|+.+.+.
T Consensus 18 ~kileIG~GfG~~vA~~L~~~-------------G~~ViaIDi~~~aV~~a~~~------------~~~~v~dDlf~p~~ 72 (134)
T PRK04148 18 KKIVELGIGFYFKVAKKLKES-------------GFDVIVIDINEKAVEKAKKL------------GLNAFVDDLFNPNL 72 (134)
T ss_pred CEEEEEEecCCHHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHh------------CCeEEECcCCCCCH
Confidence 368999999996 66655543 67999999999988877654 35677888776543
Q ss_pred C-CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 E-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. -+.+|+|.+.. -.+++...+.++.+... .-+++..++.
T Consensus 73 ~~y~~a~liysir---pp~el~~~~~~la~~~~--~~~~i~~l~~ 112 (134)
T PRK04148 73 EIYKNAKLIYSIR---PPRDLQPFILELAKKIN--VPLIIKPLSG 112 (134)
T ss_pred HHHhcCCEEEEeC---CCHHHHHHHHHHHHHcC--CCEEEEcCCC
Confidence 2 35689998844 34466666666665543 4455554444
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.6e-07 Score=59.63 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=54.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|+|+.||.|..++.+++. ..+|+++|+++..+..++.+.+..++.+ ++.++.+|..+.. .
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-------------~~~Viaidid~~~~~~a~hNa~vYGv~~----~I~~i~gD~~~~~~~~ 64 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-------------FDRVIAIDIDPERLECAKHNAEVYGVAD----NIDFICGDFFELLKRL 64 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-------------T-EEEEEES-HHHHHHHHHHHHHTT-GG----GEEEEES-HHHHGGGB
T ss_pred EEEEeccCcCHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEeCCHHHHHhhc
Confidence 6899999999999999997 4689999999999999999999998775 8999999977753 2
Q ss_pred CCCC-eeEEEEccc
Q psy890 80 ESDS-YSAYTIAFG 92 (131)
Q Consensus 80 ~~~~-~D~i~~~~~ 92 (131)
.... +|+|+++-.
T Consensus 65 ~~~~~~D~vFlSPP 78 (163)
T PF09445_consen 65 KSNKIFDVVFLSPP 78 (163)
T ss_dssp ------SEEEE---
T ss_pred cccccccEEEECCC
Confidence 2222 899998543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.8e-07 Score=62.49 Aligned_cols=70 Identities=19% Similarity=0.134 Sum_probs=58.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||+|.|.+|..+++. ..+|+++++++.++...++...... +++++..|+.+.+++.
T Consensus 33 ~VlEIGpG~GaLT~~Ll~~-------------~~~v~aiEiD~~l~~~L~~~~~~~~-------n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 33 NVLEIGPGLGALTEPLLER-------------AARVTAIEIDRRLAEVLKERFAPYD-------NLTVINGDALKFDFPS 92 (259)
T ss_pred eEEEECCCCCHHHHHHHhh-------------cCeEEEEEeCHHHHHHHHHhccccc-------ceEEEeCchhcCcchh
Confidence 6899999999999999997 5679999999999999998886433 8999999998887654
Q ss_pred C-CeeEEEEcc
Q psy890 82 D-SYSAYTIAF 91 (131)
Q Consensus 82 ~-~~D~i~~~~ 91 (131)
- .++.|+++.
T Consensus 93 l~~~~~vVaNl 103 (259)
T COG0030 93 LAQPYKVVANL 103 (259)
T ss_pred hcCCCEEEEcC
Confidence 2 467777653
|
|
| >KOG0820|consensus | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.8e-07 Score=61.88 Aligned_cols=71 Identities=15% Similarity=0.211 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|.|||.++..+++. +.+|+++++++.|+....++........ ..+++.+|+.+.+++
T Consensus 61 ~VLEvGPGTGnLT~~lLe~-------------~kkVvA~E~Dprmvael~krv~gtp~~~----kLqV~~gD~lK~d~P- 122 (315)
T KOG0820|consen 61 VVLEVGPGTGNLTVKLLEA-------------GKKVVAVEIDPRMVAELEKRVQGTPKSG----KLQVLHGDFLKTDLP- 122 (315)
T ss_pred EEEEeCCCCCHHHHHHHHh-------------cCeEEEEecCcHHHHHHHHHhcCCCccc----eeeEEecccccCCCc-
Confidence 6899999999999999997 6799999999999999999987655443 799999998876543
Q ss_pred CCeeEEEEcc
Q psy890 82 DSYSAYTIAF 91 (131)
Q Consensus 82 ~~~D~i~~~~ 91 (131)
.||.++++.
T Consensus 123 -~fd~cVsNl 131 (315)
T KOG0820|consen 123 -RFDGCVSNL 131 (315)
T ss_pred -ccceeeccC
Confidence 488888843
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=98.54 E-value=4.3e-08 Score=58.01 Aligned_cols=103 Identities=12% Similarity=0.132 Sum_probs=43.6
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CCCC
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PIES 81 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~ 81 (131)
||+|+..|..+..+++.++.. ...+++++|..+. .+..++.++..++.+ +++++..+..+. .++.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~--------~~~~~~~vD~~~~-~~~~~~~~~~~~~~~----~~~~~~g~s~~~l~~~~~ 67 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN--------GRGKLYSVDPFPG-DEQAQEIIKKAGLSD----RVEFIQGDSPDFLPSLPD 67 (106)
T ss_dssp ----------------------------------EEEESS-------------GGG-B----TEEEEES-THHHHHHHHH
T ss_pred Ccccccccccccccccccccc--------ccCCEEEEECCCc-ccccchhhhhcCCCC----eEEEEEcCcHHHHHHcCC
Confidence 699999999999988876511 1247999999885 333344444344433 799999987653 1334
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++|+++.-.. |..+.....+..+.+.|+|||++++-+
T Consensus 68 ~~~dli~iDg~-H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 68 GPIDLIFIDGD-HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --EEEEEEES----HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCEEEEEECCC-CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 68999988652 334556677899999999999998744
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.9e-07 Score=57.37 Aligned_cols=109 Identities=14% Similarity=0.084 Sum_probs=68.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHH------HHhhhccCCCCCCCceeEEeccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGE------QRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
++|+|+-.|.|++++.+...+. +...|+++-..+......+ ......... +.+.+..+.
T Consensus 50 ~tVid~~PGgGy~TrI~s~~vg----------p~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~a-----N~e~~~~~~ 114 (238)
T COG4798 50 ATVIDLIPGGGYFTRIFSPAVG----------PKGKVYAYVPAELTKFAKREGPRLNAAAREPVYA-----NVEVIGKPL 114 (238)
T ss_pred CEEEEEecCCccHhhhhchhcC----------CceeEEEecchhhcccccchhhhhhhhhhhhhhh-----hhhhhCCcc
Confidence 5799999999999999999886 4567888776554221111 111111111 333333333
Q ss_pred ccCCCCCCCeeEEEEcccccccc-------CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 75 EELPIESDSYSAYTIAFGIRNVT-------RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 75 ~~~~~~~~~~D~i~~~~~l~~~~-------~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
..+. ..+..|+++....-|.+. ...+...++.+.|||||++++.||....
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~p 171 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADP 171 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccC
Confidence 3332 345567666644333322 4578889999999999999999987654
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.6e-07 Score=61.40 Aligned_cols=76 Identities=11% Similarity=0.122 Sum_probs=58.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.++|.-+|.|..+..+++.++ ..+++++|.++.++..+++++.... .++.++..++.++.
T Consensus 23 iyVD~TlG~GGHS~~iL~~l~-----------~g~vigiD~D~~Al~~ak~~L~~~~------~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 23 IYIDCTLGFGGHSKAILEQLG-----------TGRLIGIDRDPQAIAFAKERLSDFE------GRVVLIHDNFANFFEHL 85 (305)
T ss_pred EEEEeCCCChHHHHHHHHhCC-----------CCEEEEEcCCHHHHHHHHHHHhhcC------CcEEEEeCCHHHHHHHH
Confidence 478999999999999998865 4789999999999999999876542 27888888877653
Q ss_pred --CCCCCeeEEEEccccc
Q psy890 79 --IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~ 94 (131)
....++|.|++..++.
T Consensus 86 ~~~~~~~vDgIl~DLGvS 103 (305)
T TIGR00006 86 DELLVTKIDGILVDLGVS 103 (305)
T ss_pred HhcCCCcccEEEEeccCC
Confidence 1234678887655543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-06 Score=59.66 Aligned_cols=115 Identities=16% Similarity=0.102 Sum_probs=79.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCC----------------------------CCCCCeEEEEeCCHHHHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS----------------------------EHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~----------------------------~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
.++|.-||+|.+.+..+....+.+++... ..+...++|+|+++.+++.|+.|
T Consensus 194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~N 273 (381)
T COG0116 194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKAN 273 (381)
T ss_pred ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHH
Confidence 47899999999988887765433321110 00111488999999999999999
Q ss_pred hhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccc--cccccC--H----HHHHHHHHHhccCCcEEEEEe
Q psy890 54 ARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNVTR--I----DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~--l~~~~~--~----~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....++.+ .++|...|+..+..+.+.+|+||++-. ..--.. . ..+...+++.++.-++.+++.
T Consensus 274 A~~AGv~d----~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 274 ARAAGVGD----LIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHhcCCCc----eEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEc
Confidence 99999987 899999999988644478999999633 322221 1 233344556666667776653
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.48 E-value=3.1e-06 Score=54.75 Aligned_cols=105 Identities=16% Similarity=0.174 Sum_probs=76.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
.+||+-+|||.++...+.. ...+++.+|.+...+...+++....+... +++.+..|.... ..
T Consensus 46 ~~LDlFAGSGaLGlEAlSR------------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~----~~~~~~~da~~~L~~~ 109 (187)
T COG0742 46 RVLDLFAGSGALGLEALSR------------GAARVVFVEKDRKAVKILKENLKALGLEG----EARVLRNDALRALKQL 109 (187)
T ss_pred EEEEecCCccHhHHHHHhC------------CCceEEEEecCHHHHHHHHHHHHHhCCcc----ceEEEeecHHHHHHhc
Confidence 5899999999999888776 46789999999999999999998877654 788888887643 11
Q ss_pred C-CCCeeEEEEccccc-cccCHHHHHHH--HHHhccCCcEEEEEeccC
Q psy890 80 E-SDSYSAYTIAFGIR-NVTRIDKALSE--AYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~-~~~~~~~~l~~--~~~~L~p~G~l~~~~~~~ 123 (131)
. .++||+|+.--..+ .+-+....+.. -..+|+|+|.+++ |+..
T Consensus 110 ~~~~~FDlVflDPPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~-E~~~ 156 (187)
T COG0742 110 GTREPFDLVFLDPPYAKGLLDKELALLLLEENGWLKPGALIVV-EHDK 156 (187)
T ss_pred CCCCcccEEEeCCCCccchhhHHHHHHHHHhcCCcCCCcEEEE-EeCC
Confidence 2 23599999955444 22233333333 4577999999866 5443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.3e-06 Score=61.14 Aligned_cols=111 Identities=11% Similarity=0.075 Sum_probs=68.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|+|.+||+|.+...+.+.+...... .....++|+|+++.++..++.++.-.+... ....+...|....+ ..
T Consensus 49 ~VlDPacGsG~fL~~~~~~i~~~~~~----~~~~~i~G~ei~~~~~~la~~nl~l~~~~~---~~~~i~~~d~l~~~~~~ 121 (311)
T PF02384_consen 49 SVLDPACGSGGFLVAAMEYIKEKRNK----IKEINIYGIEIDPEAVALAKLNLLLHGIDN---SNINIIQGDSLENDKFI 121 (311)
T ss_dssp EEEETT-TTSHHHHHHHHHHHTCHHH----HCCEEEEEEES-HHHHHHHHHHHHHTTHHC---BGCEEEES-TTTSHSCT
T ss_pred eeechhhhHHHHHHHHHHhhcccccc----cccceeEeecCcHHHHHHHHhhhhhhcccc---ccccccccccccccccc
Confidence 58999999999988887754100000 025789999999999999887765443221 12456667744333 22
Q ss_pred -CCCeeEEEEccccccc--c------------------C-HHHHHHHHHHhccCCcEEEEE
Q psy890 81 -SDSYSAYTIAFGIRNV--T------------------R-IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~--~------------------~-~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...||+|+++-.+... . + -..++..+.+.|+++|++.++
T Consensus 122 ~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~I 182 (311)
T PF02384_consen 122 KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAII 182 (311)
T ss_dssp ST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEE
T ss_pred cccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEE
Confidence 4689999996443222 1 0 125789999999999997654
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-07 Score=59.40 Aligned_cols=96 Identities=19% Similarity=0.221 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
++||+||++|.|+..+++... ...+++++|+.+. .. . +.+.++..|+.+..
T Consensus 26 ~vlDlG~aPGGws~~~~~~~~----------~~~~v~avDl~~~---------~~--~-----~~~~~i~~d~~~~~~~~ 79 (181)
T PF01728_consen 26 TVLDLGAAPGGWSQVLLQRGG----------PAGRVVAVDLGPM---------DP--L-----QNVSFIQGDITNPENIK 79 (181)
T ss_dssp EEEEET-TTSHHHHHHHTSTT----------TEEEEEEEESSST---------GS--------TTEEBTTGGGEEEEHSH
T ss_pred EEEEcCCcccceeeeeeeccc----------ccceEEEEecccc---------cc--c-----cceeeeecccchhhHHH
Confidence 689999999999999988852 2579999999874 00 0 14555555544321
Q ss_pred -----C--CCCCeeEEEEcccccccc-----------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -----I--ESDSYSAYTIAFGIRNVT-----------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -----~--~~~~~D~i~~~~~l~~~~-----------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. ....+|+|++-....... -....+.-+.+.|+|||.+++--+..
T Consensus 80 ~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 80 DIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp HGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred hhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 1 126899999976322211 12344556667899999888765554
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3987|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-08 Score=64.82 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=68.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++||+|+|.|..+..++... .++++.+.|..|..+.++.-- + .....++.-.+
T Consensus 115 ~lLDlGAGdGeit~~m~p~f-------------eevyATElS~tMr~rL~kk~y----------n----Vl~~~ew~~t~ 167 (288)
T KOG3987|consen 115 TLLDLGAGDGEITLRMAPTF-------------EEVYATELSWTMRDRLKKKNY----------N----VLTEIEWLQTD 167 (288)
T ss_pred eEEeccCCCcchhhhhcchH-------------HHHHHHHhhHHHHHHHhhcCC----------c----eeeehhhhhcC
Confidence 58999999999998887764 469999999999887764311 1 11222222223
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccC-CcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKP-GGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p-~G~l~~ 118 (131)
-+||+|.|.+.+.-.-++-+.|+.+...|+| +|++++
T Consensus 168 ~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 168 VKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred ceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEE
Confidence 3599999999988788899999999999999 898765
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.8e-06 Score=57.04 Aligned_cols=85 Identities=9% Similarity=0.040 Sum_probs=62.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|+|+|.+|..+++. ..+++++|+++.++...++++.... +++++..|+.++....
T Consensus 33 ~VlEiGpG~G~lT~~L~~~-------------~~~v~~vE~d~~~~~~L~~~~~~~~-------~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 33 TVLEIGPGPGALTRELLKR-------------GKRVIAVEIDPDLAKHLKERFASNP-------NVEVINGDFLKWDLYD 92 (262)
T ss_dssp EEEEESSTTSCCHHHHHHH-------------SSEEEEEESSHHHHHHHHHHCTTCS-------SEEEEES-TTTSCGGG
T ss_pred EEEEeCCCCccchhhHhcc-------------cCcceeecCcHhHHHHHHHHhhhcc-------cceeeecchhccccHH
Confidence 6899999999999999887 4789999999999999998877433 8999999998876443
Q ss_pred ---CCeeEEEEccccccccCHHHHHHHHHHh
Q psy890 82 ---DSYSAYTIAFGIRNVTRIDKALSEAYRV 109 (131)
Q Consensus 82 ---~~~D~i~~~~~l~~~~~~~~~l~~~~~~ 109 (131)
.....|+.+... .--..++.++...
T Consensus 93 ~~~~~~~~vv~NlPy---~is~~il~~ll~~ 120 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY---NISSPILRKLLEL 120 (262)
T ss_dssp HCSSSEEEEEEEETG---TGHHHHHHHHHHH
T ss_pred hhcCCceEEEEEecc---cchHHHHHHHhhc
Confidence 345566665332 1223455555553
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.2e-05 Score=53.40 Aligned_cols=100 Identities=13% Similarity=0.067 Sum_probs=72.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+||-+|+.+|.....+....+ +...|++++.|+..........+... |+--+..|+....
T Consensus 75 skVLYLGAasGTTVSHvSDIvg----------~~G~VYaVEfs~r~~rdL~~la~~R~-------NIiPIl~DAr~P~~Y 137 (229)
T PF01269_consen 75 SKVLYLGAASGTTVSHVSDIVG----------PDGVVYAVEFSPRSMRDLLNLAKKRP-------NIIPILEDARHPEKY 137 (229)
T ss_dssp -EEEEETTTTSHHHHHHHHHHT----------TTSEEEEEESSHHHHHHHHHHHHHST-------TEEEEES-TTSGGGG
T ss_pred CEEEEecccCCCccchhhhccC----------CCCcEEEEEecchhHHHHHHHhccCC-------ceeeeeccCCChHHh
Confidence 3689999999999999999886 47799999999988777766666554 8888888877542
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.--+..|+|++--. .-.+..-++.++...||+||.+++.
T Consensus 138 ~~lv~~VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~ 177 (229)
T PF01269_consen 138 RMLVEMVDVIFQDVA--QPDQARIAALNARHFLKPGGHLIIS 177 (229)
T ss_dssp TTTS--EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred hcccccccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEE
Confidence 11247999987532 2234455677788899999998875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.7e-05 Score=56.62 Aligned_cols=109 Identities=16% Similarity=0.199 Sum_probs=81.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
..|||+.+++|.=|..+++...+ .+..|+++|.++.-+...++++...+.. ++..+..|....+
T Consensus 158 e~VlD~cAAPGGKTthla~~~~~---------~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-----nv~~~~~d~~~~~~~ 223 (355)
T COG0144 158 ERVLDLCAAPGGKTTHLAELMEN---------EGAIVVAVDVSPKRLKRLRENLKRLGVR-----NVIVVNKDARRLAEL 223 (355)
T ss_pred CEEEEECCCCCCHHHHHHHhcCC---------CCceEEEEcCCHHHHHHHHHHHHHcCCC-----ceEEEeccccccccc
Confidence 36899999999999999988752 2355799999999999999999988865 6777777766543
Q ss_pred -CCCCCeeEEEEccccccc------cC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -IESDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...++||.|++-..+... ++ -.++|....++|||||+++...++.
T Consensus 224 ~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~ 291 (355)
T COG0144 224 LPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSL 291 (355)
T ss_pred ccccCcCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCC
Confidence 222359999874333211 11 1577889999999999998876664
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.8e-06 Score=53.67 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=69.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+.|+|+|+.+|.|+..+++.+. ...+++++|+.+ +... +.+.++..|+..-+
T Consensus 47 ~~ViDLGAAPGgWsQva~~~~~----------~~~~ivavDi~p---------~~~~-------~~V~~iq~d~~~~~~~ 100 (205)
T COG0293 47 MVVVDLGAAPGGWSQVAAKKLG----------AGGKIVAVDILP---------MKPI-------PGVIFLQGDITDEDTL 100 (205)
T ss_pred CEEEEcCCCCCcHHHHHHHHhC----------CCCcEEEEECcc---------cccC-------CCceEEeeeccCccHH
Confidence 5799999999999999999876 356699999966 1111 16888999877643
Q ss_pred ------CCCCCeeEEEEcccc-----cccc-----C-HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 ------IESDSYSAYTIAFGI-----RNVT-----R-IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l-----~~~~-----~-~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+...++|+|++-..- .... . -...+.-+...|+|||.+++-.+....
T Consensus 101 ~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~ 164 (205)
T COG0293 101 EKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGED 164 (205)
T ss_pred HHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCC
Confidence 334568999974332 1111 1 135566677899999999886655443
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-06 Score=60.93 Aligned_cols=70 Identities=13% Similarity=0.132 Sum_probs=60.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+++|+-||.|.++..+++. ..+|+|+|+++++++.|+++.+.++.. |++|...+.+++...
T Consensus 296 ~vlDlYCGvG~f~l~lA~~-------------~~~V~gvEi~~~aV~~A~~NA~~n~i~-----N~~f~~~~ae~~~~~~ 357 (432)
T COG2265 296 RVLDLYCGVGTFGLPLAKR-------------VKKVHGVEISPEAVEAAQENAAANGID-----NVEFIAGDAEEFTPAW 357 (432)
T ss_pred EEEEeccCCChhhhhhccc-------------CCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEeCCHHHHhhhc
Confidence 6899999999999999865 679999999999999999999998876 799999998887422
Q ss_pred --CCCeeEEEE
Q psy890 81 --SDSYSAYTI 89 (131)
Q Consensus 81 --~~~~D~i~~ 89 (131)
...+|.|+.
T Consensus 358 ~~~~~~d~Vvv 368 (432)
T COG2265 358 WEGYKPDVVVV 368 (432)
T ss_pred cccCCCCEEEE
Confidence 346899987
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.4e-06 Score=56.38 Aligned_cols=102 Identities=15% Similarity=0.120 Sum_probs=62.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh-------hccCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-------DLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~ 74 (131)
+++|+|||.|.....++...+ ..+.+|+++.+.....++...+ ..+... .++.+..+|+
T Consensus 45 vF~DlGSG~G~~v~~aal~~~-----------~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~---~~v~l~~gdf 110 (205)
T PF08123_consen 45 VFYDLGSGVGNVVFQAALQTG-----------CKKSVGIEILPELHDLAEELLEELKKRMKHYGKRP---GKVELIHGDF 110 (205)
T ss_dssp EEEEES-TTSHHHHHHHHHH-------------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB------EEEEECS-T
T ss_pred EEEECCCCCCHHHHHHHHHcC-----------CcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccc---ccceeeccCc
Confidence 579999999999887776653 5679999999988877755332 222221 2677888887
Q ss_pred ccCCCC---CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 75 EELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 75 ~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.++. -...|+|++++.+ .-++....|.+....||+|.+++-
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~-F~~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC-FDPDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT-T-HHHHHHHHHHHTTS-TT-EEEE
T ss_pred cccHhHhhhhcCCCEEEEeccc-cCHHHHHHHHHHHhcCCCCCEEEE
Confidence 654311 1347999998753 334566777888888999988765
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.34 E-value=2e-06 Score=56.65 Aligned_cols=52 Identities=21% Similarity=0.380 Sum_probs=42.6
Q ss_pred eEEecccccCCCC---CCCeeEEEEccccccccCH---HHHHHHHHHhccCCcE-----EEEE
Q psy890 68 RFLEANAEELPIE---SDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGR-----FLCL 119 (131)
Q Consensus 68 ~~~~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~p~G~-----l~~~ 119 (131)
.+...|+.+.|.+ .+.||+|.++.++..+|++ -..+.++.+.|+|+|. ++++
T Consensus 86 ~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlV 148 (219)
T PF11968_consen 86 GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLV 148 (219)
T ss_pred CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEE
Confidence 4566787777653 5689999999999999864 5779999999999999 7765
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=52.52 Aligned_cols=58 Identities=12% Similarity=0.006 Sum_probs=45.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (131)
+++|+|||.|..+..+++..+ ..+++++|+++.++..++++++..+.. ++.++...+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~-----------~~~v~~~E~~~~~~~~l~~~~~~n~~~-----~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGA-----------EGRVIAFEPLPDAYEILEENVKLNNLP-----NVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCC-----------CCEEEEEecCHHHHHHHHHHHHHcCCC-----cEEEEEeeee
Confidence 589999999999998887643 458999999999999999998766543 4555554433
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.2e-05 Score=60.24 Aligned_cols=83 Identities=11% Similarity=0.079 Sum_probs=54.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||.+||+|.+...+++.+....... .....++++|+++..+..++.++...... ...+...|.....
T Consensus 34 ~ilDP~cGsG~fl~~~~~~~~~~~~~~---~~~~~i~g~DId~~a~~~a~~~l~~~~~~-----~~~i~~~d~l~~~~~~ 105 (524)
T TIGR02987 34 KIIDPCCGDGRLIAALLKKNEEINYFK---EVELNIYFADIDKTLLKRAKKLLGEFALL-----EINVINFNSLSYVLLN 105 (524)
T ss_pred EEEeCCCCccHHHHHHHHHHHhcCCcc---cceeeeeeechhHHHHHHHHHHHhhcCCC-----Cceeeecccccccccc
Confidence 699999999999999988764211000 01368999999999999999887654311 2333433322111
Q ss_pred --CCCCCeeEEEEccc
Q psy890 79 --IESDSYSAYTIAFG 92 (131)
Q Consensus 79 --~~~~~~D~i~~~~~ 92 (131)
...+.||+|+.+-.
T Consensus 106 ~~~~~~~fD~IIgNPP 121 (524)
T TIGR02987 106 IESYLDLFDIVITNPP 121 (524)
T ss_pred cccccCcccEEEeCCC
Confidence 11257999999644
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >KOG2730|consensus | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-06 Score=57.50 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=70.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.|+|.-||.|..++..+.. +..|+++|+++.-+..|+.+.+..+.++ ++.|+++|+.++.
T Consensus 97 ~iidaf~g~gGntiqfa~~-------------~~~VisIdiDPikIa~AkhNaeiYGI~~----rItFI~GD~ld~~~~l 159 (263)
T KOG2730|consen 97 VIVDAFCGVGGNTIQFALQ-------------GPYVIAIDIDPVKIACARHNAEVYGVPD----RITFICGDFLDLASKL 159 (263)
T ss_pred hhhhhhhcCCchHHHHHHh-------------CCeEEEEeccHHHHHHHhccceeecCCc----eeEEEechHHHHHHHH
Confidence 4678888888888888776 5689999999999999999999999986 9999999977652
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+....+|+|+.+..+....-....+-.+..+++|.
T Consensus 160 q~~K~~~~~vf~sppwggp~y~~~~~~DL~~~~~p~ 195 (263)
T KOG2730|consen 160 KADKIKYDCVFLSPPWGGPSYLRADVYDLETHLKPM 195 (263)
T ss_pred hhhhheeeeeecCCCCCCcchhhhhhhhhhhhcchh
Confidence 33455788887666554443333344444444444
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.1e-05 Score=53.55 Aligned_cols=97 Identities=20% Similarity=0.156 Sum_probs=71.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+++|||+|.|-=+.-++-..+ ..+++-+|...--+...++.....+++ +++++...+++.....
T Consensus 70 ~~~DIGSGaGfPGipLAI~~p-----------~~~vtLles~~Kk~~FL~~~~~eL~L~-----nv~i~~~RaE~~~~~~ 133 (215)
T COG0357 70 RVLDIGSGAGFPGIPLAIAFP-----------DLKVTLLESLGKKIAFLREVKKELGLE-----NVEIVHGRAEEFGQEK 133 (215)
T ss_pred EEEEeCCCCCCchhhHHHhcc-----------CCcEEEEccCchHHHHHHHHHHHhCCC-----CeEEehhhHhhccccc
Confidence 689999999988887764433 667999998886666666666666665 7999999988864221
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..||+|.+.. +.++.....-+...+++||.+++
T Consensus 134 ~~~D~vtsRA----va~L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 134 KQYDVVTSRA----VASLNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ccCcEEEeeh----ccchHHHHHHHHHhcccCCcchh
Confidence 1199998754 33455666778888999888754
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.8e-05 Score=53.99 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=66.5
Q ss_pred eeeeeccc--chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 3 ILFYLVFP--GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 3 iLdig~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.||+|||- -.+.-.+++... +..+|+.+|.++-.+..++..+....-. ++.++.+|+.+..
T Consensus 72 FLDlGsGlPT~~nvHevAq~~~----------P~aRVVYVD~DPvv~ah~ralL~~~~~g-----~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 72 FLDLGSGLPTAGNVHEVAQRVA----------PDARVVYVDNDPVVLAHARALLADNPRG-----RTAYVQADLRDPEAI 136 (267)
T ss_dssp EEEET--S--SS-HHHHHHHH-----------TT-EEEEEESSHHHHHCCHHHHTT-TTS-----EEEEEE--TT-HHHH
T ss_pred EEEcccCCCCCCCHhHHHHhhC----------CCceEEEECCCchHHHHHHhhhcCCCCc-----cEEEEeCCCCCHHHH
Confidence 69999983 234555656554 5899999999999999998887765410 3889999987642
Q ss_pred ---------CCCCCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 ---------IESDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ---------~~~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+.-+.-=.+++..++|+++ ++..++..++..|.||+++.+...+..
T Consensus 137 L~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 137 LAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp HCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred hcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 1111222455667788886 578999999999999999998766543
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7e-06 Score=53.32 Aligned_cols=101 Identities=17% Similarity=0.037 Sum_probs=74.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|+|+|-.++..++. ...+++..|+.+.......-+.+.+++ .+.+...|... ++
T Consensus 82 rVLd~gagsgLvaIAaa~a------------GA~~v~a~d~~P~~~~ai~lNa~angv------~i~~~~~d~~g---~~ 140 (218)
T COG3897 82 RVLDLGAGSGLVAIAAARA------------GAAEVVAADIDPWLEQAIRLNAAANGV------SILFTHADLIG---SP 140 (218)
T ss_pred eeeecccccChHHHHHHHh------------hhHHHHhcCCChHHHHHhhcchhhccc------eeEEeeccccC---CC
Confidence 6899999999888877665 357899999998777777777777663 57777777554 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCc-EEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGG-RFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G-~l~~~~~~~~ 124 (131)
..+|+++..-.+.+-+.-++.+. +...++..| .+++-+.+++
T Consensus 141 ~~~Dl~LagDlfy~~~~a~~l~~-~~~~l~~~g~~vlvgdp~R~ 183 (218)
T COG3897 141 PAFDLLLAGDLFYNHTEADRLIP-WKDRLAEAGAAVLVGDPGRA 183 (218)
T ss_pred cceeEEEeeceecCchHHHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence 67999999988887777777777 555555555 4555565554
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.4e-06 Score=59.08 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=46.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
.+||+-||.|.++..++.. ..+|+|+|.++++++.|+++...++.. +++|+..+.+++
T Consensus 199 ~vlDlycG~G~fsl~la~~-------------~~~V~gvE~~~~av~~A~~Na~~N~i~-----n~~f~~~~~~~~ 256 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKK-------------AKKVIGVEIVEEAVEDARENAKLNGID-----NVEFIRGDAEDF 256 (352)
T ss_dssp EEEEES-TTTCCHHHHHCC-------------SSEEEEEES-HHHHHHHHHHHHHTT-------SEEEEE--SHHC
T ss_pred cEEEEeecCCHHHHHHHhh-------------CCeEEEeeCCHHHHHHHHHHHHHcCCC-----cceEEEeeccch
Confidence 4899999999999999886 568999999999999999999988876 899998776543
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.4e-05 Score=57.13 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=81.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++|.+|||.-.++..+.+. +...++.+|+|+-.+.....+..... +..++...|...+.++
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~------------G~~dI~~iD~S~V~V~~m~~~~~~~~------~~~~~~~~d~~~l~fe 111 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN------------GFEDITNIDSSSVVVAAMQVRNAKER------PEMQMVEMDMDQLVFE 111 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc------------CCCCceeccccHHHHHHHHhccccCC------cceEEEEecchhccCC
Confidence 47899999998777766654 35679999999988888776654211 2789999999999999
Q ss_pred CCCeeEEEEcccccccc----------CHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVT----------RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~----------~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+++||+|+.-..++.+- .....+.++.+.++++|+++.+.+
T Consensus 112 dESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 112 DESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99999999988876653 124557889999999999887766
|
|
| >KOG1331|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.1e-06 Score=58.56 Aligned_cols=96 Identities=24% Similarity=0.224 Sum_probs=72.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.++|+|||.|.... .. +...+.++|.+...+..+++. + ......+|+.+.|+..
T Consensus 48 v~~d~gCGngky~~-----~~----------p~~~~ig~D~c~~l~~~ak~~----~-------~~~~~~ad~l~~p~~~ 101 (293)
T KOG1331|consen 48 VGLDVGCGNGKYLG-----VN----------PLCLIIGCDLCTGLLGGAKRS----G-------GDNVCRADALKLPFRE 101 (293)
T ss_pred eeeecccCCcccCc-----CC----------CcceeeecchhhhhccccccC----C-------CceeehhhhhcCCCCC
Confidence 57999999985421 00 245789999888666655422 1 2256778999999999
Q ss_pred CCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||.+++..++||+. -...+++++.+.++|||..++.-+..
T Consensus 102 ~s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 102 ESFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred CccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 9999999999999986 35789999999999999977765544
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.1e-06 Score=53.73 Aligned_cols=96 Identities=7% Similarity=-0.004 Sum_probs=72.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+..|+|+|+|-++...+.+ ..+|++++.++-....+.+++...+.. +++.+..|+....+
T Consensus 35 ~~~DLGaGsGiLs~~Aa~~-------------A~rViAiE~dPk~a~~a~eN~~v~g~~-----n~evv~gDA~~y~f-- 94 (252)
T COG4076 35 TFADLGAGSGILSVVAAHA-------------AERVIAIEKDPKRARLAEENLHVPGDV-----NWEVVVGDARDYDF-- 94 (252)
T ss_pred ceeeccCCcchHHHHHHhh-------------hceEEEEecCcHHHHHhhhcCCCCCCc-----ceEEEecccccccc--
Confidence 4679999999998877766 458999999999999999998666644 89999999888766
Q ss_pred CCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+..|+|+|-+.=..+ ......+..+.+.|+..+.++
T Consensus 95 e~ADvvicEmlDTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 95 ENADVVICEMLDTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred cccceeHHHHhhHHhhcccccHHHHHHHHHhhcCCccc
Confidence 568999885432111 233456777777888777664
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.2e-05 Score=55.74 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH--h---hhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR--A---RDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.+|-+|.|.|-..+++++.-+ ..+++-+|.++.|++.++.+ . ......+ ++++.+..|+.+
T Consensus 292 ~vLvlGGGDGLAlRellkyP~-----------~~qI~lVdLDP~miela~~~~vlr~~N~~sf~d---pRv~Vv~dDAf~ 357 (508)
T COG4262 292 SVLVLGGGDGLALRELLKYPQ-----------VEQITLVDLDPRMIELASHATVLRALNQGSFSD---PRVTVVNDDAFQ 357 (508)
T ss_pred eEEEEcCCchHHHHHHHhCCC-----------cceEEEEecCHHHHHHhhhhhHhhhhccCCccC---CeeEEEeccHHH
Confidence 478899999999888888732 67899999999999999833 2 2334444 489999999877
Q ss_pred CC-CCCCCeeEEEEccccccccC-----HHHHHHHHHHhccCCcEEEE
Q psy890 77 LP-IESDSYSAYTIAFGIRNVTR-----IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 77 ~~-~~~~~~D~i~~~~~l~~~~~-----~~~~l~~~~~~L~p~G~l~~ 118 (131)
+- -..+.||.||....=.+.+. -..+...+.+.|+++|.+++
T Consensus 358 wlr~a~~~fD~vIVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 358 WLRTAADMFDVVIVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred HHHhhcccccEEEEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 63 23458999998543222221 25677888999999999876
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.4e-05 Score=55.30 Aligned_cols=106 Identities=18% Similarity=0.243 Sum_probs=80.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.|||+++++|.-+..++.... ...++++.|++..-+...+++....+.. ++.....|..... .
T Consensus 88 ~VLD~CAapGgKt~~la~~~~----------~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-----~v~~~~~D~~~~~~~~ 152 (283)
T PF01189_consen 88 RVLDMCAAPGGKTTHLAELMG----------NKGEIVANDISPKRLKRLKENLKRLGVF-----NVIVINADARKLDPKK 152 (283)
T ss_dssp EEEESSCTTSHHHHHHHHHTT----------TTSEEEEEESSHHHHHHHHHHHHHTT-S-----SEEEEESHHHHHHHHH
T ss_pred cccccccCCCCceeeeeeccc----------chhHHHHhccCHHHHHHHHHHHHhcCCc-----eEEEEeeccccccccc
Confidence 589999999999999988875 3679999999999999999999887765 6777767766542 2
Q ss_pred CCCCeeEEEEccccccc------cC----------------HHHHHHHHHHhc----cCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVL----KPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L----~p~G~l~~~~~~ 122 (131)
....||.|++-...... ++ -.+.|..+.+.+ +|||+++...++
T Consensus 153 ~~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 153 PESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp HTTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred cccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 23469999984332211 11 157789999999 999999876555
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.2e-05 Score=56.34 Aligned_cols=125 Identities=10% Similarity=0.050 Sum_probs=70.9
Q ss_pred CceeeeecccchhhHHHhhhh----cCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC----CC-----CCCCc-
Q psy890 1 MYILFYLVFPGDIAFRFLNYV----DKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK----VP-----VPNPR- 66 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~----~~-----~~~~~- 66 (131)
++|+|+|||+|.++..+...+ .+.........+..++..-|...+-....-+.+..... .+ .....
T Consensus 65 ~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~ 144 (386)
T PLN02668 65 FTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSY 144 (386)
T ss_pred eeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCce
Confidence 369999999998876654432 21111111112457888888766555544444332100 00 00001
Q ss_pred -eeEEecccccCCCCCCCeeEEEEccccccccC--------------------------------------HHHHHHHHH
Q psy890 67 -LRFLEANAEELPIESDSYSAYTIAFGIRNVTR--------------------------------------IDKALSEAY 107 (131)
Q Consensus 67 -~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~--------------------------------------~~~~l~~~~ 107 (131)
+..+.+++-.--++.++.+++++++.+||++. ...+|..=.
T Consensus 145 f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra 224 (386)
T PLN02668 145 FAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARA 224 (386)
T ss_pred EEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12223344333478899999999999999863 122333344
Q ss_pred HhccCCcEEEEEeccCCC
Q psy890 108 RVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 108 ~~L~p~G~l~~~~~~~~~ 125 (131)
+-|.|||++++.-.+++.
T Consensus 225 ~ELvpGG~mvl~~~Gr~~ 242 (386)
T PLN02668 225 QEMKRGGAMFLVCLGRTS 242 (386)
T ss_pred HHhccCcEEEEEEecCCC
Confidence 568899999988766643
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=54.42 Aligned_cols=60 Identities=12% Similarity=0.118 Sum_probs=49.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
..+|.--|.|..+..+++.++ ...+++++|.++.++..++++..... .++.++..++.++
T Consensus 26 iyiD~TlG~GGHS~~iL~~l~----------~~~~li~~DrD~~Ai~~a~~~l~~~~------~r~~~v~~~F~~l 85 (314)
T COG0275 26 IYIDGTLGAGGHSRAILEKLP----------DLGRLIGIDRDPQAIAIAKERLKEFD------GRVTLVHGNFANL 85 (314)
T ss_pred EEEEecCCCcHhHHHHHHhCC----------CCCeEEEEcCCHHHHHHHHHHhhccC------CcEEEEeCcHHHH
Confidence 357888899999999999986 46789999999999999999887644 2788888876654
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=52.97 Aligned_cols=110 Identities=13% Similarity=0.147 Sum_probs=64.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-------------CCCC-----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-------------VPVP----- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-------------~~~~----- 63 (131)
++||||||+--.. ++...+ -..+++..|.++.-++..++-++..+. +...
T Consensus 59 ~llDiGsGPtiy~--~lsa~~----------~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e 126 (256)
T PF01234_consen 59 TLLDIGSGPTIYQ--LLSACE----------WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEE 126 (256)
T ss_dssp EEEEES-TT--GG--GTTGGG----------TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHH
T ss_pred EEEEeCCCcHHHh--hhhHHH----------hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhh
Confidence 5799999984332 222211 246799999998777654442222100 0000
Q ss_pred -----CCce-eEEecccccCC-CCC-----CCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 64 -----NPRL-RFLEANAEELP-IES-----DSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 64 -----~~~~-~~~~~d~~~~~-~~~-----~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...+ +++..|..+.+ +.. ..||+|++.+++.... ...+++.++.++|||||.|+++..-.
T Consensus 127 ~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 127 KEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcC
Confidence 0113 35667766643 322 3599999999986553 45688999999999999999876544
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.7e-05 Score=49.09 Aligned_cols=73 Identities=18% Similarity=0.131 Sum_probs=53.5
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPIES 81 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~~~ 81 (131)
+.||||.=|.++..+++.-. ..+++++|+++.-++.|++++...++.+ ++.+..+|- ..++ +.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~-----------~~~~ia~DI~~gpL~~A~~~i~~~~l~~----~i~~rlgdGL~~l~-~~ 64 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGK-----------APKAIAVDINPGPLEKAKENIAKYGLED----RIEVRLGDGLEVLK-PG 64 (205)
T ss_dssp EEEET-STTHHHHHHHHTTS-----------EEEEEEEESSHHHHHHHHHHHHHTT-TT----TEEEEE-SGGGG---GG
T ss_pred CceeccchhHHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCcc----cEEEEECCcccccC-CC
Confidence 57999999999999988743 5689999999999999999999988876 899999984 4332 22
Q ss_pred CCeeEEEEcc
Q psy890 82 DSYSAYTIAF 91 (131)
Q Consensus 82 ~~~D~i~~~~ 91 (131)
+..|.|+...
T Consensus 65 e~~d~ivIAG 74 (205)
T PF04816_consen 65 EDVDTIVIAG 74 (205)
T ss_dssp G---EEEEEE
T ss_pred CCCCEEEEec
Confidence 3367777644
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00012 Score=45.54 Aligned_cols=81 Identities=15% Similarity=0.105 Sum_probs=55.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~ 79 (131)
.|+|+|||.|+++..++..+.+.. ...+++++|.++..++.+.++..... +.. ++.+...+.....
T Consensus 28 ~vvD~GsG~GyLs~~La~~l~~~~-------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~~~~~- 95 (141)
T PF13679_consen 28 TVVDLGSGKGYLSRALAHLLCNSS-------PNLRVLGIDCNESLVESAQKRAQKLGSDLEK----RLSFIQGDIADES- 95 (141)
T ss_pred EEEEeCCChhHHHHHHHHHHHhcC-------CCCeEEEEECCcHHHHHHHHHHHHhcchhhc----cchhhccchhhhc-
Confidence 689999999999999988554221 36899999999999999988877654 221 4555555544321
Q ss_pred CCCCeeEEEEccccc
Q psy890 80 ESDSYSAYTIAFGIR 94 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~ 94 (131)
.....++++..+...
T Consensus 96 ~~~~~~~~vgLHaCG 110 (141)
T PF13679_consen 96 SSDPPDILVGLHACG 110 (141)
T ss_pred ccCCCeEEEEeeccc
Confidence 134567776644433
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.4e-05 Score=55.71 Aligned_cols=75 Identities=13% Similarity=0.171 Sum_probs=53.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
..+|.--|.|-.+..+++.++ ..+++++|.+++++..+++++.... .++.++..++.++.
T Consensus 23 ~~vD~T~G~GGHS~aiL~~~~-----------~~~li~~DrD~~a~~~a~~~l~~~~------~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 23 IYVDCTFGGGGHSKAILEKLP-----------NGRLIGIDRDPEALERAKERLKKFD------DRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-----------T-EEEEEES-HHHHHHHHCCTCCCC------TTEEEEES-GGGHHHHH
T ss_pred eEEeecCCcHHHHHHHHHhCC-----------CCeEEEecCCHHHHHHHHHHHhhcc------ceEEEEeccHHHHHHHH
Confidence 468888899999999999886 5899999999999999998877542 38999999888763
Q ss_pred --C-CCCCeeEEEEcccc
Q psy890 79 --I-ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 --~-~~~~~D~i~~~~~l 93 (131)
. ....+|-|+.-.++
T Consensus 86 ~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 86 KELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHTTTTS-EEEEEEE-S-
T ss_pred HHccCCCccCEEEEcccc
Confidence 2 33578888765444
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.95 E-value=3.9e-05 Score=54.37 Aligned_cols=121 Identities=11% Similarity=0.016 Sum_probs=65.9
Q ss_pred CceeeeecccchhhHHHhhhhc----CCC-CCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc----CCCCCCCc--eeE
Q psy890 1 MYILFYLVFPGDIAFRFLNYVD----KLP-PNTLSEHCAPHVTVADINRAMLDVGEQRARDLF----KVPVPNPR--LRF 69 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~----~~~-~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~----~~~~~~~~--~~~ 69 (131)
++|+|+||.+|..+..+...+- ... ..+....+..+++.-|.-.+-....-+.+.... .. .+ +..
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~----~~~f~~g 93 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKF----RNYFVSG 93 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHT----TSEEEEE
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCC----ceEEEEe
Confidence 4799999999999887765431 110 000111245789999976655554433333220 00 03 334
Q ss_pred EecccccCCCCCCCeeEEEEccccccccC---------------------------------------HHHHHHHHHHhc
Q psy890 70 LEANAEELPIESDSYSAYTIAFGIRNVTR---------------------------------------IDKALSEAYRVL 110 (131)
Q Consensus 70 ~~~d~~~~~~~~~~~D~i~~~~~l~~~~~---------------------------------------~~~~l~~~~~~L 110 (131)
+.+++-.--++.++.|++++++.+||++. +..+|..=.+-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45666554588899999999999998852 123444444668
Q ss_pred cCCcEEEEEeccCCC
Q psy890 111 KPGGRFLCLEFSHVN 125 (131)
Q Consensus 111 ~p~G~l~~~~~~~~~ 125 (131)
+|||++++.-.++..
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999988777665
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=9.7e-05 Score=52.18 Aligned_cols=82 Identities=15% Similarity=0.088 Sum_probs=52.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||+||++|.|+..+++. +.+|+++|..+ +- ..+... +++.....|.......
T Consensus 213 ~~vlDLGAsPGGWT~~L~~r-------------G~~V~AVD~g~-l~----~~L~~~-------~~V~h~~~d~fr~~p~ 267 (357)
T PRK11760 213 MRAVDLGAAPGGWTYQLVRR-------------GMFVTAVDNGP-MA----QSLMDT-------GQVEHLRADGFKFRPP 267 (357)
T ss_pred CEEEEeCCCCcHHHHHHHHc-------------CCEEEEEechh-cC----HhhhCC-------CCEEEEeccCcccCCC
Confidence 57899999999999999886 56999999544 21 112222 2788887775554222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhcc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 111 (131)
.+.+|.++|-... .+.+....+.+++.
T Consensus 268 ~~~vDwvVcDmve----~P~rva~lm~~Wl~ 294 (357)
T PRK11760 268 RKNVDWLVCDMVE----KPARVAELMAQWLV 294 (357)
T ss_pred CCCCCEEEEeccc----CHHHHHHHHHHHHh
Confidence 5678999875432 23344444444443
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00027 Score=46.37 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=71.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.||-+|+.+|.....+..-.+ ...+++++.|+..........+... |+--+..|+....
T Consensus 79 ~VLYLGAasGTTvSHVSDIv~-----------~G~iYaVEfs~R~~reLl~~a~~R~-------Ni~PIL~DA~~P~~Y~ 140 (231)
T COG1889 79 KVLYLGAASGTTVSHVSDIVG-----------EGRIYAVEFSPRPMRELLDVAEKRP-------NIIPILEDARKPEKYR 140 (231)
T ss_pred EEEEeeccCCCcHhHHHhccC-----------CCcEEEEEecchhHHHHHHHHHhCC-------CceeeecccCCcHHhh
Confidence 589999999999998888765 5789999999988888777776655 7888888876532
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.--+..|+|+.--. .-.+..-+..++...|+++|+++++
T Consensus 141 ~~Ve~VDviy~DVA--Qp~Qa~I~~~Na~~FLk~~G~~~i~ 179 (231)
T COG1889 141 HLVEKVDVIYQDVA--QPNQAEILADNAEFFLKKGGYVVIA 179 (231)
T ss_pred hhcccccEEEEecC--CchHHHHHHHHHHHhcccCCeEEEE
Confidence 11245788876321 1223344567778889999987764
|
|
| >KOG1122|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0004 Score=50.14 Aligned_cols=106 Identities=16% Similarity=0.127 Sum_probs=80.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+.+.+|.-+..++.... ....+++.|.+.+-+...+.++...++. +......|..++|
T Consensus 244 RIlDmcAAPGGKTt~IAalMk----------n~G~I~AnD~n~~r~~~l~~n~~rlGv~-----ntiv~n~D~~ef~~~~ 308 (460)
T KOG1122|consen 244 RILDMCAAPGGKTTHIAALMK----------NTGVIFANDSNENRLKSLKANLHRLGVT-----NTIVSNYDGREFPEKE 308 (460)
T ss_pred eecchhcCCCchHHHHHHHHc----------CCceEEecccchHHHHHHHHHHHHhCCC-----ceEEEccCcccccccc
Confidence 699999999988888877765 3678999999999999999999988865 6777777776665
Q ss_pred CCCCCeeEEEEcccccc------------cc---------C-HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRN------------VT---------R-IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~------------~~---------~-~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++. +||.|..-..+.. .. . -.+.|.+....+++||+|+-..++-
T Consensus 309 ~~~-~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI 374 (460)
T KOG1122|consen 309 FPG-SFDRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCSI 374 (460)
T ss_pred cCc-ccceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeeec
Confidence 444 8999987444332 11 0 1466778888999999998765553
|
|
| >KOG3201|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=3.5e-05 Score=48.77 Aligned_cols=106 Identities=13% Similarity=-0.003 Sum_probs=67.9
Q ss_pred ceeeeecccchh-hHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 2 YILFYLVFPGDI-AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G~G~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.|||+|.|--.+ +.+++.+.+ ...|+..|-++..+...++....+....- .++.....+.... .
T Consensus 32 ~ilelgggft~laglmia~~a~-----------~~~v~ltdgne~svrnv~ki~~~n~~s~~--tsc~vlrw~~~~aqsq 98 (201)
T KOG3201|consen 32 RILELGGGFTGLAGLMIACKAP-----------DSSVWLTDGNEESVRNVEKIRNSNMASSL--TSCCVLRWLIWGAQSQ 98 (201)
T ss_pred HHHHhcCchhhhhhhheeeecC-----------CceEEEecCCHHHHHHHHHHHhccccccc--ceehhhHHHHhhhHHH
Confidence 478999884444 454554443 67899999999999888776654321100 0222222222221 1
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....||+|++.-++-.-......+..+.++|+|.|.-++..
T Consensus 99 ~eq~tFDiIlaADClFfdE~h~sLvdtIk~lL~p~g~Al~fs 140 (201)
T KOG3201|consen 99 QEQHTFDIILAADCLFFDEHHESLVDTIKSLLRPSGRALLFS 140 (201)
T ss_pred HhhCcccEEEeccchhHHHHHHHHHHHHHHHhCcccceeEec
Confidence 234689999998776544556777888999999999966643
|
|
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00032 Score=48.87 Aligned_cols=81 Identities=7% Similarity=-0.082 Sum_probs=47.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEeccccc-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEE-L-- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~-~-- 77 (131)
+.||||+|...+--.|..... +-+++++|+++..++.|+++++.+ .+.. +++++...-.. +
T Consensus 105 ~glDIGTGAscIYpLLg~~~~-----------~W~fvaTdID~~sl~~A~~nv~~N~~L~~----~I~l~~~~~~~~i~~ 169 (299)
T PF05971_consen 105 RGLDIGTGASCIYPLLGAKLY-----------GWSFVATDIDPKSLESARENVERNPNLES----RIELRKQKNPDNIFD 169 (299)
T ss_dssp EEEEES-TTTTHHHHHHHHHH-------------EEEEEES-HHHHHHHHHHHHHT-T-TT----TEEEEE--ST-SSTT
T ss_pred EeecCCccHHHHHHHHhhhhc-----------CCeEEEecCCHHHHHHHHHHHHhcccccc----ceEEEEcCCccccch
Confidence 579999998766444433332 578999999999999999999988 6664 78887554221 1
Q ss_pred --CCCCCCeeEEEEcccccccc
Q psy890 78 --PIESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~ 97 (131)
....+.||..+|+-.++...
T Consensus 170 ~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 170 GIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TSTT--S-EEEEEE-----SS-
T ss_pred hhhcccceeeEEecCCccccCh
Confidence 12346899999987776543
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >KOG4589|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00019 Score=46.52 Aligned_cols=100 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-ccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~- 78 (131)
.+|||+||.+|.|+.-..+..+ +...+.++|+-. +.... -+.++.+ |+.+..
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~----------p~g~v~gVDllh---------~~p~~-------Ga~~i~~~dvtdp~~ 124 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVN----------PNGMVLGVDLLH---------IEPPE-------GATIIQGNDVTDPET 124 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhC----------CCceEEEEeeee---------ccCCC-------CcccccccccCCHHH
Confidence 3799999999999998888765 478899999733 11111 3444444 554421
Q ss_pred -------CCCCCeeEEEEccccccc--c--CH-------HHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 79 -------IESDSYSAYTIAFGIRNV--T--RI-------DKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 79 -------~~~~~~D~i~~~~~l~~~--~--~~-------~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.+....|+|++-+.-... . |- ..++.-....++|+|.+++--+.+.+.
T Consensus 125 ~~ki~e~lp~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~ 190 (232)
T KOG4589|consen 125 YRKIFEALPNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSEE 190 (232)
T ss_pred HHHHHHhCCCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCch
Confidence 456678999885432111 1 21 223344456778999998876665544
|
|
| >KOG1709|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00041 Score=46.02 Aligned_cols=100 Identities=13% Similarity=0.047 Sum_probs=71.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
+||++|-|-|-....+-++ +..+-+.++..++.+++.++.-.... .++....+--++. .+
T Consensus 104 rvLnVGFGMgIidT~iQe~------------~p~~H~IiE~hp~V~krmr~~gw~ek------~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 104 RVLNVGFGMGIIDTFIQEA------------PPDEHWIIEAHPDVLKRMRDWGWREK------ENVIILEGRWEDVLNTL 165 (271)
T ss_pred eEEEeccchHHHHHHHhhc------------CCcceEEEecCHHHHHHHHhcccccc------cceEEEecchHhhhccc
Confidence 6899999998766655444 24678899999999988876533221 2677766655543 25
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+++.||-|.--..-....+...+.+.+.++|||+|++-+.
T Consensus 166 ~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred cccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEe
Confidence 6778999977554445567777788999999999998764
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00019 Score=50.85 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=66.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~ 79 (131)
.|||+|.|+|.-..++-..+++ -..++.++.|+..-+...........+ ...+...|+.. +++
T Consensus 116 siLDvG~GPgtgl~A~n~i~Pd----------l~sa~ile~sp~lrkV~~tl~~nv~t~-----~td~r~s~vt~dRl~l 180 (484)
T COG5459 116 SILDVGAGPGTGLWALNDIWPD----------LKSAVILEASPALRKVGDTLAENVSTE-----KTDWRASDVTEDRLSL 180 (484)
T ss_pred hhhccCCCCchhhhhhcccCCC----------chhhhhhccCHHHHHHHHHHHhhcccc-----cCCCCCCccchhccCC
Confidence 5899999999876666555552 335667777775555444333322211 23333334332 223
Q ss_pred C-CCCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 E-SDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+ .+.|++++...-+-... .+...+..+-.++.|||.++++|.+.+.
T Consensus 181 p~ad~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~ 230 (484)
T COG5459 181 PAADLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTPA 230 (484)
T ss_pred CccceeehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCch
Confidence 2 34677777755543332 3445788899999999999999977654
|
|
| >KOG2798|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00046 Score=48.16 Aligned_cols=36 Identities=31% Similarity=0.584 Sum_probs=32.9
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+.||+|+..+.+....+....+..+.+.|+|||+++
T Consensus 258 ~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 258 GSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred CccceEEEEEEeechHHHHHHHHHHHHhccCCcEEE
Confidence 469999999998888899999999999999999976
|
|
| >KOG0822|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00027 Score=52.41 Aligned_cols=104 Identities=11% Similarity=0.057 Sum_probs=75.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+=+|+|-|-+....++...... ++.++++++.+++++...+. .....+.. +++++..|+..++-+.
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~-------RkVklyavEKNPNAivtL~~-~n~~~W~~----~Vtii~~DMR~w~ap~ 437 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETD-------RKVKLYAVEKNPNAIVTLQN-RNFECWDN----RVTIISSDMRKWNAPR 437 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhc-------CceEEEEEecCcchhhhhhh-hchhhhcC----eeEEEeccccccCCch
Confidence 467789999988777666543222 47899999999999888776 44445553 8999999999997555
Q ss_pred CCeeEEEEccccccccC---HHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~p~G~l~~ 118 (131)
...|++++=. |..+.+ -..-|.-+.+.|||+|+.+=
T Consensus 438 eq~DI~VSEL-LGSFGDNELSPECLDG~q~fLkpdgIsIP 476 (649)
T KOG0822|consen 438 EQADIIVSEL-LGSFGDNELSPECLDGAQKFLKPDGISIP 476 (649)
T ss_pred hhccchHHHh-hccccCccCCHHHHHHHHhhcCCCceEcc
Confidence 7899997632 222221 24678888999999988753
|
|
| >KOG2187|consensus | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.4e-05 Score=54.45 Aligned_cols=57 Identities=18% Similarity=0.123 Sum_probs=50.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.++|+.||||.++..+++. ..+|+|++++++.+..|+++...++.+ +.+|+++-.++
T Consensus 386 ~llDv~CGTG~iglala~~-------------~~~ViGvEi~~~aV~dA~~nA~~Ngis-----Na~Fi~gqaE~ 442 (534)
T KOG2187|consen 386 TLLDVCCGTGTIGLALARG-------------VKRVIGVEISPDAVEDAEKNAQINGIS-----NATFIVGQAED 442 (534)
T ss_pred EEEEEeecCCceehhhhcc-------------ccceeeeecChhhcchhhhcchhcCcc-----ceeeeecchhh
Confidence 4799999999999988886 568999999999999999999988887 89999994444
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00088 Score=45.01 Aligned_cols=91 Identities=19% Similarity=0.179 Sum_probs=63.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~~~-- 78 (131)
.+||+|+.||-++..+++. +..+|+++|....++..-.+.-+ ++ .+...++..+.
T Consensus 82 v~LDiGsSTGGFTd~lLq~------------gAk~VyavDVG~~Ql~~kLR~d~----------rV~~~E~tN~r~l~~~ 139 (245)
T COG1189 82 VVLDIGSSTGGFTDVLLQR------------GAKHVYAVDVGYGQLHWKLRNDP----------RVIVLERTNVRYLTPE 139 (245)
T ss_pred EEEEecCCCccHHHHHHHc------------CCcEEEEEEccCCccCHhHhcCC----------cEEEEecCChhhCCHH
Confidence 5799999999999988886 46789999998866654332211 33 33344544432
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+. +..|++++--++- ....+|..+...++|++.++.
T Consensus 140 ~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 140 DFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred Hcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEE
Confidence 22 2678888855433 567788889999999988765
|
|
| >KOG2793|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0016 Score=44.24 Aligned_cols=101 Identities=6% Similarity=-0.073 Sum_probs=62.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-----hhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-----RDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
+|||+|+|+|..+...+... ..++...|...-. ...+.+. ....+. ..+.....+-..
T Consensus 89 ~vlELGsGtglvG~~aa~~~------------~~~v~ltD~~~~~-~~L~~~~~~~~~~l~~~g----~~v~v~~L~Wg~ 151 (248)
T KOG2793|consen 89 NVLELGSGTGLVGILAALLL------------GAEVVLTDLPKVV-ENLKFNRDKNNIALNQLG----GSVIVAILVWGN 151 (248)
T ss_pred eEEEecCCccHHHHHHHHHh------------cceeccCCchhhH-HHHHHhhhhhhhhhhhcC----CceeEEEEecCC
Confidence 58999999997776666653 5788888865533 2222221 111111 033333333222
Q ss_pred C---CCCCCC-eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 L---PIESDS-YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~---~~~~~~-~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. .+.... +|+|+++-++.........+.-++..|..++.+++.
T Consensus 152 ~~~~~~~~~~~~DlilasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~ 198 (248)
T KOG2793|consen 152 ALDVSFRLPNPFDLILASDVVYEEESFEGLVKTLAFLLAKDGTIFLA 198 (248)
T ss_pred cccHhhccCCcccEEEEeeeeecCCcchhHHHHHHHHHhcCCeEEEE
Confidence 2 122233 999999999988888888888888888888865553
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0014 Score=47.33 Aligned_cols=102 Identities=16% Similarity=0.148 Sum_probs=73.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
++||.-+|+|-=++..+.++. ...+++.-|+|+++++..+++++.+++.+ ..++....|++.+ ...
T Consensus 52 ~~lDalaasGvR~iRy~~E~~----------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~---~~~~v~~~DAn~ll~~~ 118 (377)
T PF02005_consen 52 RVLDALAASGVRGIRYAKELA----------GVDKVTANDISPEAVELIKRNLELNGLED---ERIEVSNMDANVLLYSR 118 (377)
T ss_dssp EEEETT-TTSHHHHHHHHH-S----------SECEEEEEES-HHHHHHHHHHHHHCT-SG---CCEEEEES-HHHHHCHS
T ss_pred eEEeccccccHHHHHHHHHcC----------CCCEEEEecCCHHHHHHHHHhHhhccccC---ceEEEehhhHHHHhhhc
Confidence 689999999988888888764 35789999999999999999998887764 1477778887664 224
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...||+|=. .-+-.+..+|..+.+.++.||++.++.
T Consensus 119 ~~~fD~IDl----DPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 119 QERFDVIDL----DPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp TT-EEEEEE------SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCCEEEe----CCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 678999944 122356778999999999999998753
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0017 Score=42.95 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=52.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|+|+|.-.|..+...+..+.... ...+|+++|++-..... +..+..... ++++++.+|..+..
T Consensus 35 ~IIE~Gi~~GGSli~~A~ml~~~~-------~~~~VigiDIdir~~~~--~a~e~hp~~----~rI~~i~Gds~d~~~~~ 101 (206)
T PF04989_consen 35 LIIETGIAHGGSLIFWASMLELLG-------GKGKVIGIDIDIRPHNR--KAIESHPMS----PRITFIQGDSIDPEIVD 101 (206)
T ss_dssp EEEEE--TTSHHHHHHHHHHHHTT----------EEEEEES-GTT--S---GGGG--------TTEEEEES-SSSTHHHH
T ss_pred eEEEEecCCCchHHHHHHHHHHhC-------CCceEEEEeCCcchhch--HHHhhcccc----CceEEEECCCCCHHHHH
Confidence 689999988766665554432111 36799999996533322 222322222 28999999976542
Q ss_pred -CC----CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IE----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. .....+|+.- +-|...+..+.|.....++++|+++++-
T Consensus 102 ~v~~~~~~~~~vlVilD-s~H~~~hvl~eL~~y~plv~~G~Y~IVe 146 (206)
T PF04989_consen 102 QVRELASPPHPVLVILD-SSHTHEHVLAELEAYAPLVSPGSYLIVE 146 (206)
T ss_dssp TSGSS----SSEEEEES-S----SSHHHHHHHHHHT--TT-EEEET
T ss_pred HHHHhhccCCceEEEEC-CCccHHHHHHHHHHhCccCCCCCEEEEE
Confidence 11 1223344442 2344557778888899999999999773
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00022 Score=52.51 Aligned_cols=96 Identities=16% Similarity=0.053 Sum_probs=60.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 80 (131)
+|+|..+|.|.++.++.+. .|+++..-+..-......+-..+ ..-...|..+ ++.=
T Consensus 368 NVMDMnAg~GGFAAAL~~~---------------~VWVMNVVP~~~~ntL~vIydRG--------LIG~yhDWCE~fsTY 424 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDD---------------PVWVMNVVPVSGPNTLPVIYDRG--------LIGVYHDWCEAFSTY 424 (506)
T ss_pred eeeeecccccHHHHHhccC---------------CceEEEecccCCCCcchhhhhcc--------cchhccchhhccCCC
Confidence 5899999999998887653 26666654421111111111111 1112223222 1222
Q ss_pred CCCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||+|.+...+.... +...++.++-|+|+|+|.+++-|
T Consensus 425 PRTYDLlHA~~lfs~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 425 PRTYDLLHADGLFSLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred CcchhheehhhhhhhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 47899999998887765 56889999999999999999855
|
; GO: 0008168 methyltransferase activity |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=46.29 Aligned_cols=123 Identities=14% Similarity=0.125 Sum_probs=77.0
Q ss_pred ceeeeecccchhhHHHhhhhc----CCCCCCCC-----CCCCCeEEEEeCCH--HHHHHHHHHhhhc------------c
Q psy890 2 YILFYLVFPGDIAFRFLNYVD----KLPPNTLS-----EHCAPHVTVADINR--AMLDVGEQRARDL------------F 58 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~----~~~~~~~~-----~~~~~~~~~~D~s~--~~~~~~~~~~~~~------------~ 58 (131)
+||+||.|.|.-...++..+. ....+... .++...++.+|+.. ..+......+... .
T Consensus 89 ~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~~ 168 (315)
T PF11312_consen 89 RVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANWP 168 (315)
T ss_pred eEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccccc
Confidence 689999999887777776661 11111110 12456899999875 4455554444433 0
Q ss_pred CCCCCCCceeEEecccccCCCC-------CCCeeEEEEcccccc-----ccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 59 KVPVPNPRLRFLEANAEELPIE-------SDSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 59 ~~~~~~~~~~~~~~d~~~~~~~-------~~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
..++..-+++|...|+..+..+ ....++|...|.+.- ...-.++|.++-..++||..++++|..+.
T Consensus 169 ~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGS 246 (315)
T PF11312_consen 169 LIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGS 246 (315)
T ss_pred cCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCC
Confidence 1111122467888887665421 124677777666542 23557889999999999999999986553
|
|
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.002 Score=42.84 Aligned_cols=76 Identities=9% Similarity=-0.056 Sum_probs=60.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.+.|+||.=+++...+.+..+ ...+++.|+++.-++.+.++++..++.+ +++...+|-...-..+
T Consensus 19 ~iaDIGsDHAYLp~~Lv~~~~-----------~~~~va~eV~~gpl~~a~~~v~~~~l~~----~i~vr~~dgl~~l~~~ 83 (226)
T COG2384 19 RIADIGSDHAYLPIYLVKNNP-----------ASTAVAGEVVPGPLESAIRNVKKNNLSE----RIDVRLGDGLAVLELE 83 (226)
T ss_pred ceeeccCchhHhHHHHHhcCC-----------cceEEEeecccCHHHHHHHHHHhcCCcc----eEEEeccCCccccCcc
Confidence 378999999999998888753 7789999999999999999999988776 8888888864322334
Q ss_pred CCeeEEEEccc
Q psy890 82 DSYSAYTIAFG 92 (131)
Q Consensus 82 ~~~D~i~~~~~ 92 (131)
+.+|.|+...+
T Consensus 84 d~~d~ivIAGM 94 (226)
T COG2384 84 DEIDVIVIAGM 94 (226)
T ss_pred CCcCEEEEeCC
Confidence 57888876543
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=44.91 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=39.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+|+|+|+|+|.++..+++.+.+..+.- ....+++.+|+|+.+.+..++++...
T Consensus 21 ~ivE~GaG~G~La~diL~~l~~~~p~~---~~~~~y~ivE~Sp~L~~~Q~~~L~~~ 73 (252)
T PF02636_consen 21 RIVEIGAGRGTLARDILRYLRKFSPEV---YKRLRYHIVEISPYLRERQKERLSEH 73 (252)
T ss_dssp EEEEES-TTSHHHHHHHHHHCCTTHHH---HTTCEEEEE-TTCCCHHHHHHHCCCH
T ss_pred EEEEECCCchHHHHHHHHHHHHhChhh---hhcceEEEEcCCHHHHHHHHHHhhhh
Confidence 689999999999999999886332100 02468999999999999888887653
|
; PDB: 4F3N_A 1ZKD_B. |
| >KOG1099|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0025 Score=42.81 Aligned_cols=99 Identities=16% Similarity=0.163 Sum_probs=64.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+++|+.+.+|.|+.-+.+++-+...+.. +....++++|+.+ ....+ -+.-+.+|+....
T Consensus 44 rvVDLCAAPGSWSQvlSrkL~~~~~~~~--~~~~kIVaVDLQ~-----------MaPI~-----GV~qlq~DIT~~stae 105 (294)
T KOG1099|consen 44 RVVDLCAAPGSWSQVLSRKLYKPLPSSG--ERDKKIVAVDLQP-----------MAPIE-----GVIQLQGDITSASTAE 105 (294)
T ss_pred HHhhhhcCCCcHHHHHHHHHhccCCCcc--hhhccEEEEeccc-----------CCccC-----ceEEeecccCCHhHHH
Confidence 4689999999999999888753211110 1223699999854 11111 4666778877643
Q ss_pred -----CCCCCeeEEEEccc-----cccccC------HHHHHHHHHHhccCCcEEEE
Q psy890 79 -----IESDSYSAYTIAFG-----IRNVTR------IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~-----l~~~~~------~~~~l~~~~~~L~p~G~l~~ 118 (131)
|..++.|+|+|-.. +|.+.+ +..+|.-...+|+|||.|+.
T Consensus 106 ~Ii~hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 106 AIIEHFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred HHHHHhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 55678999999543 555543 23445556678999999874
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0029 Score=43.02 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=56.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC----CCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 77 (131)
+|||.-+|+|..++.++.. +.+|+++|.++......++++.......+. ..+++++..|....
T Consensus 91 ~VLD~TAGlG~Da~~las~-------------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~ 157 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASV-------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_pred EEEECCCCccHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHH
Confidence 6899999999999988875 567999999999988888877763111000 02678888886554
Q ss_pred -CCCCCCeeEEEEcccc
Q psy890 78 -PIESDSYSAYTIAFGI 93 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l 93 (131)
.-...+||+|++--+.
T Consensus 158 L~~~~~~fDVVYlDPMf 174 (250)
T PRK10742 158 LTDITPRPQVVYLDPMF 174 (250)
T ss_pred HhhCCCCCcEEEECCCC
Confidence 2123479999984433
|
|
| >KOG3115|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0025 Score=42.06 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=34.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+.|||||.|.+...++...+ ..-+.|+++--...+..++++...
T Consensus 64 faDIGCGyGGLlv~Lsp~fP-----------dtLiLGmEIR~KVsdYVk~RI~AL 107 (249)
T KOG3115|consen 64 FADIGCGYGGLLMKLAPKFP-----------DTLILGMEIRDKVSDYVKERIQAL 107 (249)
T ss_pred EEeeccCccchhhhccccCc-----------cceeeeehhhHHHHHHHHHHHHHH
Confidence 68999999999998888775 567888888777777666666543
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00011 Score=46.14 Aligned_cols=54 Identities=24% Similarity=0.314 Sum_probs=42.5
Q ss_pred eeEEecccccCCCCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 67 LRFLEANAEELPIESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 67 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.+++-...+..|.+++.|+|.+.+++.++. ....+++.+++.|||||++-++-
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAv 86 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAV 86 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEc
Confidence 3344444445567889999999999998875 56788999999999999998753
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0032 Score=42.75 Aligned_cols=78 Identities=6% Similarity=-0.121 Sum_probs=53.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||-=-++....... ++..|++.|++..+++.........++ +.+....|.... .+.
T Consensus 108 sVlDigCGlNPlalp~~~~~-----------~~a~Y~a~DID~~~ve~l~~~l~~l~~------~~~~~v~Dl~~~-~~~ 169 (251)
T PF07091_consen 108 SVLDIGCGLNPLALPWMPEA-----------PGATYIAYDIDSQLVEFLNAFLAVLGV------PHDARVRDLLSD-PPK 169 (251)
T ss_dssp EEEEET-TTCHHHHHTTTSS-----------TT-EEEEEESBHHHHHHHHHHHHHTT-------CEEEEEE-TTTS-HTT
T ss_pred hhhhhhccCCceehhhcccC-----------CCcEEEEEeCCHHHHHHHHHHHHhhCC------CcceeEeeeecc-CCC
Confidence 69999999866655444332 367999999999999999888776653 556666675543 234
Q ss_pred CCeeEEEEcccccccc
Q psy890 82 DSYSAYTIAFGIRNVT 97 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~ 97 (131)
...|+.+..-.++.+.
T Consensus 170 ~~~DlaLllK~lp~le 185 (251)
T PF07091_consen 170 EPADLALLLKTLPCLE 185 (251)
T ss_dssp SEESEEEEET-HHHHH
T ss_pred CCcchhhHHHHHHHHH
Confidence 6689998887777665
|
|
| >KOG1501|consensus | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0027 Score=46.46 Aligned_cols=98 Identities=12% Similarity=0.067 Sum_probs=64.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
.+||||+|||-++.+..+.- .-.+++++.-..|...+++.....++++ +++.+.--..+... +
T Consensus 69 ~vLdigtGTGLLSmMAvrag------------aD~vtA~EvfkPM~d~arkI~~kng~Sd----kI~vInkrStev~vg~ 132 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG------------ADSVTACEVFKPMVDLARKIMHKNGMSD----KINVINKRSTEVKVGG 132 (636)
T ss_pred EEEEccCCccHHHHHHHHhc------------CCeEEeehhhchHHHHHHHHHhcCCCcc----ceeeeccccceeeecC
Confidence 47999999999999888873 4569999999999999999999999887 77776544333321 1
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhc-cCCcE
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVL-KPGGR 115 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L-~p~G~ 115 (131)
....|+++.--+...+ ......+++.+++| ++|..
T Consensus 133 ~~RadI~v~e~fdtEligeGalps~qhAh~~L~~~nc~ 170 (636)
T KOG1501|consen 133 SSRADIAVREDFDTELIGEGALPSLQHAHDMLLVDNCK 170 (636)
T ss_pred cchhhhhhHhhhhhhhhccccchhHHHHHHHhcccCCe
Confidence 2335666543322211 12334455666555 55543
|
|
| >KOG4058|consensus | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0086 Score=37.64 Aligned_cols=103 Identities=11% Similarity=0.033 Sum_probs=71.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+.+|+|+|.|++....++.- -..-++++.++=.+..++-..-..+... ++.|..-|+.+.++.
T Consensus 75 klvDlGSGDGRiVlaaar~g------------~~~a~GvELNpwLVaysrl~a~R~g~~k----~trf~RkdlwK~dl~- 137 (199)
T KOG4058|consen 75 KLVDLGSGDGRIVLAAARCG------------LRPAVGVELNPWLVAYSRLHAWRAGCAK----STRFRRKDLWKVDLR- 137 (199)
T ss_pred cEEeccCCCceeehhhhhhC------------CCcCCceeccHHHHHHHHHHHHHHhccc----chhhhhhhhhhcccc-
Confidence 47899999999988887762 3568899999987777766655555554 788888888776553
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.|.-++.+..-.-+++++ .++..-|..|..++.+-+.-|+
T Consensus 138 -dy~~vviFgaes~m~dLe---~KL~~E~p~nt~vvacRFPLP~ 177 (199)
T KOG4058|consen 138 -DYRNVVIFGAESVMPDLE---DKLRTELPANTRVVACRFPLPT 177 (199)
T ss_pred -ccceEEEeehHHHHhhhH---HHHHhhCcCCCeEEEEecCCCc
Confidence 355555544444455554 3344556778888877776665
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.00082 Score=39.82 Aligned_cols=36 Identities=17% Similarity=0.384 Sum_probs=28.5
Q ss_pred CeeEEEEcccccccc------CHHHHHHHHHHhccCCcEEEE
Q psy890 83 SYSAYTIAFGIRNVT------RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~------~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.||+|+|..+.-|+. .+..++..+.+.|+|||++++
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil 42 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL 42 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE
Confidence 489999988766553 357889999999999999976
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >KOG2539|consensus | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=42.57 Aligned_cols=110 Identities=16% Similarity=0.117 Sum_probs=66.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPIE 80 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~~ 80 (131)
+.|+|.|.|.-.-.+...+.. ....++.+|.|..|.....+..+...-.. .......-+.. +|..
T Consensus 204 ~~dfgsg~~~~~~a~~~lwr~---------t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g----~~~v~~~~~~r~~~pi~ 270 (491)
T KOG2539|consen 204 LRDFGSGAGNGGWAAVLLWRQ---------TKREYSLVDRSRAMLKQSEKNLRDGSHIG----EPIVRKLVFHRQRLPID 270 (491)
T ss_pred HHHHHhhcccchhhhhhhccc---------ccceeEeeccchHHHHHHHHhhcChhhcC----chhccccchhcccCCCC
Confidence 456666655443333333320 25689999999999999988877621000 11111111111 2333
Q ss_pred C-CCeeEEEEccccccccCH----HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 S-DSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~-~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
. ..||+|++.+.++...+. ...-..+++..++|+.+++++-+...
T Consensus 271 ~~~~yDlvi~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~~~ 320 (491)
T KOG2539|consen 271 IKNGYDLVICAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKGTTM 320 (491)
T ss_pred cccceeeEEeeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecCCcc
Confidence 3 459999999999887642 34455567778999999998876544
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.022 Score=39.46 Aligned_cols=73 Identities=10% Similarity=0.101 Sum_probs=50.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+++|+-||.|..+.-+... +...+.++|+++.+++..+.+++.. .+..|+.++...
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~------------G~~~v~a~e~~~~a~~~~~~N~~~~-----------~~~~Di~~~~~~ 57 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKA------------GFEIVAANEIDKSAAETYEANFPNK-----------LIEGDITKIDEK 57 (275)
T ss_pred CcEEEEccCcchHHHHHHHc------------CCEEEEEEeCCHHHHHHHHHhCCCC-----------CccCccccCchh
Confidence 67999999999987766543 2346899999999998888776432 334455554321
Q ss_pred --CCCeeEEEEccccccc
Q psy890 81 --SDSYSAYTIAFGIRNV 96 (131)
Q Consensus 81 --~~~~D~i~~~~~l~~~ 96 (131)
...+|+++....+..+
T Consensus 58 ~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 58 DFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred hcCCCCCEEEeCCCChhh
Confidence 3468999987665543
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.051 Score=37.18 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=71.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+.+|+|+|+..-++.++..+.... .-.+++.+|+|...+....+.+......- .+.-+++|.+.. . .
T Consensus 81 ~lveLGsGns~Ktr~Llda~~~~~-------~~~ryvpiDv~a~iL~~ta~ai~~~y~~l----~v~~l~~~~~~~La~~ 149 (321)
T COG4301 81 TLVELGSGNSTKTRILLDALAHRG-------SLLRYVPIDVSASILRATATAILREYPGL----EVNALCGDYELALAEL 149 (321)
T ss_pred eEEEecCCccHHHHHHHHHhhhcC-------CcceeeeecccHHHHHHHHHHHHHhCCCC----eEeehhhhHHHHHhcc
Confidence 578999999999999988875111 24789999999988887655554332111 455666775532 1 2
Q ss_pred CCCCeeEE-EEcccccccc--CHHHHHHHHHHhccCCcEEEE-Eecc
Q psy890 80 ESDSYSAY-TIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC-LEFS 122 (131)
Q Consensus 80 ~~~~~D~i-~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~-~~~~ 122 (131)
+..+--++ +....+.++. +...++.++...|+||-++++ +|+-
T Consensus 150 ~~~~~Rl~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~ 196 (321)
T COG4301 150 PRGGRRLFVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLR 196 (321)
T ss_pred cCCCeEEEEEecccccCCChHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 22222222 2233455654 557899999999999988876 3443
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.025 Score=38.32 Aligned_cols=83 Identities=18% Similarity=0.197 Sum_probs=48.7
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhcc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK 111 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~ 111 (131)
..+++++|+++..++..++..+..++ +++.+..|+.+. | .-.++||++++.-. .......-++.+....||
T Consensus 67 ~~~I~VvDiDeRll~fI~~~a~~~gl------~i~~~~~DlR~~LP~~~~~~fD~f~TDPP-yT~~G~~LFlsRgi~~Lk 139 (243)
T PF01861_consen 67 PKRITVVDIDERLLDFINRVAEEEGL------PIEAVHYDLRDPLPEELRGKFDVFFTDPP-YTPEGLKLFLSRGIEALK 139 (243)
T ss_dssp -SEEEEE-S-HHHHHHHHHHHHHHT--------EEEE---TTS---TTTSS-BSEEEE----SSHHHHHHHHHHHHHTB-
T ss_pred CCeEEEEEcCHHHHHHHHHHHHHcCC------ceEEEEecccccCCHHHhcCCCEEEeCCC-CCHHHHHHHHHHHHHHhC
Confidence 57899999999999999998888774 588888887763 2 12478999988432 112355678888889998
Q ss_pred CCcEEEEEeccC
Q psy890 112 PGGRFLCLEFSH 123 (131)
Q Consensus 112 p~G~l~~~~~~~ 123 (131)
..|...+..++.
T Consensus 140 ~~g~~gy~~~~~ 151 (243)
T PF01861_consen 140 GEGCAGYFGFTH 151 (243)
T ss_dssp STT-EEEEEE-T
T ss_pred CCCceEEEEEec
Confidence 666333333333
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.014 Score=41.64 Aligned_cols=54 Identities=11% Similarity=0.015 Sum_probs=41.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 58 (131)
.++|+|+|+|.+...+++.+....++- ....++..+++|++....-+++++...
T Consensus 80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~---~~~~~~~iiE~s~~L~~~Qk~~L~~~~ 133 (370)
T COG1565 80 KLVEIGAGRGTLASDILRTLRRLYPEL---YEALSYYIIEPSPELRARQKETLKATE 133 (370)
T ss_pred eEEEeCCCcChHHHHHHHHHHHhCHHH---HhcceEEEEecCHHHHHHHHHHHhccc
Confidence 589999999999999999875322110 025789999999999998888887643
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.032 Score=39.75 Aligned_cols=86 Identities=14% Similarity=0.253 Sum_probs=57.6
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccCCCCCCCe
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEELPIESDSY 84 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~~~~~ 84 (131)
+| |.|..+..+++.. +.+++++|.+++-.+.+++.=.. .++... ......-.+.+
T Consensus 175 ~G-GlGh~avQ~Aka~------------ga~Via~~~~~~K~e~a~~lGAd-----------~~i~~~~~~~~~~~~~~~ 230 (339)
T COG1064 175 AG-GLGHMAVQYAKAM------------GAEVIAITRSEEKLELAKKLGAD-----------HVINSSDSDALEAVKEIA 230 (339)
T ss_pred Cc-HHHHHHHHHHHHc------------CCeEEEEeCChHHHHHHHHhCCc-----------EEEEcCCchhhHHhHhhC
Confidence 44 6778888888875 58999999999988888765322 222222 11111111238
Q ss_pred eEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 85 SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 85 D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
|+|+..-. ...+....+.|+++|.++++-..
T Consensus 231 d~ii~tv~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 231 DAIIDTVG-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred cEEEECCC-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 99977533 55678888999999999987554
|
|
| >KOG1562|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.028 Score=39.24 Aligned_cols=104 Identities=8% Similarity=0.030 Sum_probs=74.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
.+|=||.|.|-..+..+++. ...+++.+|++...++..++-.+. .++++ +++.++.+|-..+
T Consensus 124 kvlVVgggDggvlrevikH~-----------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~---~~v~l~iGDG~~fl~ 189 (337)
T KOG1562|consen 124 KVLVVGGGDGGVLREVIKHK-----------SVENILLCEIDENVIESSKQYLPTLACGYEG---KKVKLLIGDGFLFLE 189 (337)
T ss_pred eEEEEecCCccceeeeeccc-----------cccceeeehhhHHHHHHHHHHhHHHhcccCC---CceEEEeccHHHHHH
Confidence 46778888888877777762 357899999999999988887664 23443 3788888885443
Q ss_pred CCCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+.++||+|+.--.=.-.+ =...+...+.+.||++|++...
T Consensus 190 ~~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q 235 (337)
T KOG1562|consen 190 DLKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQ 235 (337)
T ss_pred HhccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEe
Confidence 24578899998843211111 1356788899999999998764
|
|
| >KOG1253|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.008 Score=44.48 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=75.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||.-+++|--++..+..++ ...++++-|.+++.+...+++.+.++..+ .++....|+..+
T Consensus 112 ~vLealsAtGlrslRya~El~----------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~----ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 112 RVLEALSATGLRSLRYAKELP----------GVRQVVANDLNENAVTSIQRNVELNGVED----IVEPHHSDANVLMYEH 177 (525)
T ss_pred hHHHHhhhhhHHHHHHHHHhc----------chhhhcccCCCHHHHHHHHhhhhhcCchh----hcccccchHHHHHHhc
Confidence 578888999988888888876 46789999999999999999998876554 566666665543
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+-....||+|-.- -+-....+|....+.++.||.+.++
T Consensus 178 ~~~~~~FDvIDLD----PyGs~s~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 178 PMVAKFFDVIDLD----PYGSPSPFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cccccccceEecC----CCCCccHHHHHHHHHhhcCCEEEEE
Confidence 2224679999542 1223456788888888999999875
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.014 Score=39.46 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=45.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC----CCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 77 (131)
+|||.-+|-|..+..++.. +.+|++++-|+-+....+..+.......+. ..+++++..|..+.
T Consensus 78 ~VLDaTaGLG~Da~vlA~~-------------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~ 144 (234)
T PF04445_consen 78 SVLDATAGLGRDAFVLASL-------------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEY 144 (234)
T ss_dssp -EEETT-TTSHHHHHHHHH-------------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCH
T ss_pred EEEECCCcchHHHHHHHcc-------------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHH
Confidence 6999999999999988753 468999999997766555443322111100 12688888886663
Q ss_pred -CCCCCCeeEEEEccccc
Q psy890 78 -PIESDSYSAYTIAFGIR 94 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~ 94 (131)
..+..+||+|++--++.
T Consensus 145 L~~~~~s~DVVY~DPMFp 162 (234)
T PF04445_consen 145 LRQPDNSFDVVYFDPMFP 162 (234)
T ss_dssp CCCHSS--SEEEE--S--
T ss_pred HhhcCCCCCEEEECCCCC
Confidence 44567899999855543
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG1596|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.058 Score=36.74 Aligned_cols=98 Identities=12% Similarity=0.021 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
++|-+|+++|.....+...+. +...||+++.|...=.......+... |+.-+.-|+....
T Consensus 159 KVLYLGAasGttVSHvSDiVG----------peG~VYAVEfs~rsGRdL~nmAkkRt-------NiiPIiEDArhP~KYR 221 (317)
T KOG1596|consen 159 KVLYLGAASGTTVSHVSDIVG----------PEGCVYAVEFSHRSGRDLINMAKKRT-------NIIPIIEDARHPAKYR 221 (317)
T ss_pred eEEEeeccCCceeehhhcccC----------CCceEEEEEecccchHHHHHHhhccC-------CceeeeccCCCchhee
Confidence 689999999999888888776 57789999998744333332222222 6665666655421
Q ss_pred CCCCCeeEEEEccccccccCH-HHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~p~G~l~~~ 119 (131)
..-.-.|+|++--. .++. .-...+....||++|-+++.
T Consensus 222 mlVgmVDvIFaDva---qpdq~RivaLNA~~FLk~gGhfvis 260 (317)
T KOG1596|consen 222 MLVGMVDVIFADVA---QPDQARIVALNAQYFLKNGGHFVIS 260 (317)
T ss_pred eeeeeEEEEeccCC---CchhhhhhhhhhhhhhccCCeEEEE
Confidence 11123566655321 1222 23345566789999988764
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.016 Score=40.34 Aligned_cols=42 Identities=12% Similarity=-0.028 Sum_probs=36.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 56 (131)
.|||.-+|+|.......+. +.+++|+|++++.++.+++++..
T Consensus 211 ~VLDPF~GSGTT~~AA~~l-------------gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 211 IVLDPFAGSFTTGAVAKAS-------------GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred EEEECCCCCcHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHh
Confidence 5899999999887766554 67899999999999999999864
|
|
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.039 Score=37.68 Aligned_cols=111 Identities=14% Similarity=0.165 Sum_probs=59.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH--------------------------HHHHHHHHHhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR--------------------------AMLDVGEQRAR 55 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~--------------------------~~~~~~~~~~~ 55 (131)
.|+|+||-.|..+..+...+.... ....+++++|.=+ ...+..++++.
T Consensus 77 divE~GV~rGgs~~~~~~~l~~~~------~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~ 150 (248)
T PF05711_consen 77 DIVECGVWRGGSSILMRAVLEAYG------NPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFA 150 (248)
T ss_dssp EEEEE--TTSHHHHHHHHHHHCTT------TTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCC
T ss_pred EEEEEeeCCCHHHHHHHHHHHHhC------CCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHH
Confidence 378999988877665544432110 0245677776321 13444555555
Q ss_pred hccCCCCCCCceeEEecccccC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 56 DLFKVPVPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 56 ~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..++.+ .++.++.+.+.+. | .+.+.+-++.. -..........|..++..|.|||++++=|+..
T Consensus 151 ~~gl~~---~~v~~vkG~F~dTLp~~p~~~IAll~l--D~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 151 RYGLLD---DNVRFVKGWFPDTLPDAPIERIALLHL--DCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp CTTTSS---TTEEEEES-HHHHCCC-TT--EEEEEE-----SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred HcCCCc---ccEEEECCcchhhhccCCCccEEEEEE--eccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 554433 3799998887653 2 22233322222 22233345678999999999999999866654
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.2 Score=37.65 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=71.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~- 79 (131)
+|+|..||+|..-....+.+.+.. ....++|.|++...+..++.+.--++..- .+.....|-..-| .
T Consensus 189 ~i~DpacGsgg~l~~a~~~~~~~~-------~~~~~yGqE~~~~t~~l~~mN~~lhgi~~----~~~i~~~dtl~~~~~~ 257 (489)
T COG0286 189 SIYDPACGSGGMLLQAAKYLKRHQ-------DEIFIYGQEINDTTYRLAKMNLILHGIEG----DANIRHGDTLSNPKHD 257 (489)
T ss_pred eecCCCCchhHHHHHHHHHHHhhc-------cceeEEEEeCCHHHHHHHHHHHHHhCCCc----cccccccccccCCccc
Confidence 589999999999888877775221 03679999999999999999887665431 1233333322222 2
Q ss_pred ---CCCCeeEEEEccccc---ccc---------------------CH-HHHHHHHHHhccCCcEEEEE
Q psy890 80 ---ESDSYSAYTIAFGIR---NVT---------------------RI-DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ---~~~~~D~i~~~~~l~---~~~---------------------~~-~~~l~~~~~~L~p~G~l~~~ 119 (131)
....||.|+++-.+. |.. .. ..+++++...|+|+|+.-++
T Consensus 258 ~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaiv 325 (489)
T COG0286 258 DKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIV 325 (489)
T ss_pred ccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEE
Confidence 235699988853331 110 12 67899999999998865543
|
|
| >KOG2198|consensus | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.25 Score=35.57 Aligned_cols=111 Identities=21% Similarity=0.253 Sum_probs=69.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+.+.+|.-+..+++.+-..+ ....+++=|.+..-+........... . ++..+...++...+
T Consensus 158 ~VLDmCAAPG~Kt~qLLeal~~~~-------~~g~vvaND~d~~R~~~L~~q~~~l~-~----~~~~v~~~~~~~~p~~~ 225 (375)
T KOG2198|consen 158 KVLDMCAAPGGKTAQLLEALHKDP-------TRGYVVANDVDPKRLNMLVHQLKRLP-S----PNLLVTNHDASLFPNIY 225 (375)
T ss_pred eeeeeccCCCccHHHHHHHHhcCC-------CCCeeEecccCHHHHHHHHHHHhccC-C----cceeeecccceeccccc
Confidence 589999999999999999875322 12478888988877666665553221 1 14444444443332
Q ss_pred ------CCCCCeeEEEEccccc-------------c-c--------cCH-HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 ------IESDSYSAYTIAFGIR-------------N-V--------TRI-DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~-------------~-~--------~~~-~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.....||.|++--.+. . + +.+ ..+|.+-.++||+||.++-..++..
T Consensus 226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLn 300 (375)
T KOG2198|consen 226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLN 300 (375)
T ss_pred cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCC
Confidence 1234699998732211 1 0 011 3678888899999999987666543
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.24 Score=31.74 Aligned_cols=58 Identities=14% Similarity=0.161 Sum_probs=41.7
Q ss_pred eEEecccccCC----CCCCCeeEEEEccccccc-----c--------CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 68 RFLEANAEELP----IESDSYSAYTIAFGIRNV-----T--------RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 68 ~~~~~d~~~~~----~~~~~~D~i~~~~~l~~~-----~--------~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.....|+.++. .....||.|+.++..... . =+..++..+.++|+++|.+.++-...++
T Consensus 56 V~~~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~p 130 (166)
T PF10354_consen 56 VLHGVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQP 130 (166)
T ss_pred cccCCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCC
Confidence 34566777664 246789999998775441 1 1357789999999999999987666655
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.15 Score=36.86 Aligned_cols=100 Identities=21% Similarity=0.226 Sum_probs=61.0
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-ccc-C-
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEE-L- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~-~- 77 (131)
+||..|+|+ |..+..+++..+ ..++++++.+++..+.+++..... .+.+...+ ... +
T Consensus 187 ~VlV~g~G~vG~~~~~la~~~g-----------~~~vi~~~~~~~~~~~~~~~~~~~--------vi~~~~~~~~~~~l~ 247 (386)
T cd08283 187 TVAVWGCGPVGLFAARSAKLLG-----------AERVIAIDRVPERLEMARSHLGAE--------TINFEEVDDVVEALR 247 (386)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcCCHHHHHHHHHcCCcE--------EEcCCcchHHHHHHH
Confidence 467778877 777777777753 346999999998888877652110 11111111 110 1
Q ss_pred CC-CCCCeeEEEEcccc---------------ccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PI-ESDSYSAYTIAFGI---------------RNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~-~~~~~D~i~~~~~l---------------~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. ....+|+|+-.-.- +...+....+.++.+.++++|.++.+.
T Consensus 248 ~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 248 ELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred HHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 11 22358988774321 111334567888999999999998764
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.085 Score=41.19 Aligned_cols=106 Identities=11% Similarity=0.046 Sum_probs=61.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-hhccCCCC---CCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-RDLFKVPV---PNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~d~~~~ 77 (131)
+|+=+|+|-|-+....++...... ...++++++.++........+. ....|.+. ....++++..|+..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~g-------vkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALG-------VRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcC-------CcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 478899999998776666543111 3679999999965433332222 22233210 012589999998887
Q ss_pred CCCC-----------CCeeEEEEccccccccC---HHHHHHHHHHhccC----CcE
Q psy890 78 PIES-----------DSYSAYTIAFGIRNVTR---IDKALSEAYRVLKP----GGR 115 (131)
Q Consensus 78 ~~~~-----------~~~D~i~~~~~l~~~~~---~~~~l~~~~~~L~p----~G~ 115 (131)
..+. +++|+||+=. |-.+-| -.+-|.-+.+.||+ +|+
T Consensus 776 ~~pe~~~s~~~P~~~gKaDIVVSEL-LGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 776 ATAAENGSLTLPADFGLCDLIVSEL-LGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccccccccceehHhh-hcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 4221 3699998721 222211 13455556666665 665
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.092 Score=37.75 Aligned_cols=98 Identities=16% Similarity=0.151 Sum_probs=69.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
.|+|--+|||-=++..+...+ ..+++.-|+|+.+++.++++++.+... +...+..|.+.+-. .
T Consensus 55 ~v~DalsatGiRgIRya~E~~-----------~~~v~lNDisp~Avelik~Nv~~N~~~-----~~~v~n~DAN~lm~~~ 118 (380)
T COG1867 55 RVLDALSATGIRGIRYAVETG-----------VVKVVLNDISPKAVELIKENVRLNSGE-----DAEVINKDANALLHEL 118 (380)
T ss_pred EEeecccccchhHhhhhhhcC-----------ccEEEEccCCHHHHHHHHHHHHhcCcc-----cceeecchHHHHHHhc
Confidence 578999999987777777754 458999999999999999999877333 34444466554321 1
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...||+|=. .-+-.+..++....+.++.+|++-++
T Consensus 119 ~~~fd~IDi----DPFGSPaPFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 119 HRAFDVIDI----DPFGSPAPFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred CCCccEEec----CCCCCCchHHHHHHHHhhcCCEEEEE
Confidence 256888832 11224566788888888899998764
|
|
| >KOG1227|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.014 Score=40.77 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=62.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|+|+-+|-|+++...+-.. +...|.++|.++..++..+++.+.+.+.+ +...+.+|-.. +-+.
T Consensus 197 viVDLYAGIGYFTlpflV~a-----------gAk~V~A~EwNp~svEaLrR~~~~N~V~~----r~~i~~gd~R~-~~~~ 260 (351)
T KOG1227|consen 197 VIVDLYAGIGYFTLPFLVTA-----------GAKTVFACEWNPWSVEALRRNAEANNVMD----RCRITEGDNRN-PKPR 260 (351)
T ss_pred hhhhhhcccceEEeehhhcc-----------CccEEEEEecCHHHHHHHHHHHHhcchHH----HHHhhhccccc-cCcc
Confidence 57899999999988444433 25789999999999999999988776554 55555555433 2344
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcE-EEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGR-FLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~-l~~ 118 (131)
...|.|.....-. -++...-+.++|+|.|- ++.
T Consensus 261 ~~AdrVnLGLlPS----se~~W~~A~k~Lk~eggsilH 294 (351)
T KOG1227|consen 261 LRADRVNLGLLPS----SEQGWPTAIKALKPEGGSILH 294 (351)
T ss_pred ccchheeeccccc----cccchHHHHHHhhhcCCcEEE
Confidence 5678886644322 22233334555665543 443
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.14 Score=31.49 Aligned_cols=44 Identities=18% Similarity=0.020 Sum_probs=37.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+|+|+|++-|..++.++-. +..+|+++++++...+..+++++..
T Consensus 31 tV~dIGA~iGdSaiYF~l~------------GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 31 TIQIVGADCGSSALYFLLR------------GASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred EEEEecCCccchhhHHhhc------------CccEEEEeccCHHHHHHHHHHhhhh
Confidence 6899999999998877665 4678999999999999998877654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.041 Score=37.05 Aligned_cols=43 Identities=14% Similarity=0.105 Sum_probs=36.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||.-||+|.......+. +.+++|+|++++..+.+.+++...
T Consensus 166 ~vlDpf~Gsgtt~~aa~~~-------------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 166 IVLDPFAGSGSTCVAALQS-------------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred EEEeCCCCCCHHHHHHHHc-------------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 5899999999887766554 678999999999999999988653
|
|
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.046 Score=36.53 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=30.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
++-|..||+|++..-+.-.... .-..+++.|+++++++.|++|+
T Consensus 54 tLyDPCCG~gyLLTVlGLLh~~---------~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 54 TLYDPCCGSGYLLTVLGLLHRR---------RLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp EEEETT-TTSHHHHHHHHHTGG---------GEEEEEEEES-HHHHHHHHHHH
T ss_pred eeeccCCCccHHHHHHHHhhhH---------HHHhHhcccCCHHHHHHHHHhh
Confidence 4679999999985544333221 2568999999999999887765
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >KOG2920|consensus | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.0083 Score=41.40 Aligned_cols=105 Identities=13% Similarity=-0.045 Sum_probs=57.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHH-HHHhhhcc-CCCCCCCceeEEecccc---c
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG-EQRARDLF-KVPVPNPRLRFLEANAE---E 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~d~~---~ 76 (131)
++||+|||+|--.+.+... ....+...|.|...+... ..++.... ..........+....-. +
T Consensus 119 ~vLELgCg~~Lp~i~~~~~------------~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~d 186 (282)
T KOG2920|consen 119 RVLELGCGAALPGIFAFVK------------GAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSD 186 (282)
T ss_pred eeEecCCcccccchhhhhh------------ccceeeeEecchhheeeecccceecchhhhhhhhhcccceecccccccc
Confidence 5899999999777666554 236788888888776311 00000000 00000001111111111 1
Q ss_pred CC--CCC-CCeeEEEEccccccccCHHHH-HHHHHHhccCCcEEEE
Q psy890 77 LP--IES-DSYSAYTIAFGIRNVTRIDKA-LSEAYRVLKPGGRFLC 118 (131)
Q Consensus 77 ~~--~~~-~~~D~i~~~~~l~~~~~~~~~-l~~~~~~L~p~G~l~~ 118 (131)
+. +.+ ..||+|.++-.+......... .......++++|++++
T Consensus 187 g~~~~t~~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~ 232 (282)
T KOG2920|consen 187 GVFNHTERTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYV 232 (282)
T ss_pred chhhhccccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhh
Confidence 11 122 279999988887777766655 5555666788888775
|
|
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.18 Score=35.25 Aligned_cols=72 Identities=7% Similarity=0.008 Sum_probs=49.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+++|+-||-|-++.-+.+. +...+.++|+++.+.+.-+.++. .....|+.++.
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~a------------g~~~~~a~e~~~~a~~~y~~N~~------------~~~~~Di~~~~~~ 56 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQA------------GFEVVWAVEIDPDACETYKANFP------------EVICGDITEIDPS 56 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHT------------TEEEEEEEESSHHHHHHHHHHHT------------EEEESHGGGCHHH
T ss_pred CcEEEEccCccHHHHHHHhc------------CcEEEEEeecCHHHHHhhhhccc------------ccccccccccccc
Confidence 57899999999888877665 24579999999998888887774 34566666653
Q ss_pred -CCCCCeeEEEEcccccccc
Q psy890 79 -IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~ 97 (131)
++. .+|+++....+..++
T Consensus 57 ~l~~-~~D~l~ggpPCQ~fS 75 (335)
T PF00145_consen 57 DLPK-DVDLLIGGPPCQGFS 75 (335)
T ss_dssp HHHH-T-SEEEEE---TTTS
T ss_pred cccc-cceEEEeccCCceEe
Confidence 333 589998876665443
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.56 Score=33.66 Aligned_cols=99 Identities=20% Similarity=0.231 Sum_probs=62.1
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cc-cc-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NA-EE-L 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~-~~-~ 77 (131)
+++=+|||+ |-++..+++..+ ..+++++|.+++-++.|++....... ..... +. .. .
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~G-----------a~~Viv~d~~~~Rl~~A~~~~g~~~~--------~~~~~~~~~~~~~ 231 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLG-----------ASVVIVVDRSPERLELAKEAGGADVV--------VNPSEDDAGAEIL 231 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCCHHHHHHHHHhCCCeEe--------ecCccccHHHHHH
Confidence 356677775 444555566554 68899999999999999875433211 11001 10 00 0
Q ss_pred CCC-CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 78 PIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 78 ~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
... ...+|+++-.-+ ....+.++.++++|+|.+.++-.....
T Consensus 232 ~~t~g~g~D~vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 232 ELTGGRGADVVIEAVG------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred HHhCCCCCCEEEECCC------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 112 236899987665 334788899999999999887655443
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.3 Score=34.60 Aligned_cols=94 Identities=11% Similarity=0.107 Sum_probs=51.0
Q ss_pred eeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 3 iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|=.|+| .|..+..+++..+ ..+++++|.+++-++.+++. +... -+.....++.+.....
T Consensus 173 VlV~G~G~vG~~aiqlak~~G-----------~~~Vi~~~~~~~~~~~a~~l----Ga~~----vi~~~~~~~~~~~~~~ 233 (343)
T PRK09880 173 VFVSGVGPIGCLIVAAVKTLG-----------AAEIVCADVSPRSLSLAREM----GADK----LVNPQNDDLDHYKAEK 233 (343)
T ss_pred EEEECCCHHHHHHHHHHHHcC-----------CcEEEEEeCCHHHHHHHHHc----CCcE----EecCCcccHHHHhccC
Confidence 4445552 3444555555532 34689999998877777542 2110 0111111111111112
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+.+|+|+-.-+- ...+....+.|+++|.++.+-.
T Consensus 234 g~~D~vid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 234 GYFDVSFEVSGH------PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEEcc
Confidence 358988765431 2356778889999999988654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.73 Score=34.93 Aligned_cols=96 Identities=18% Similarity=0.106 Sum_probs=60.1
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc----
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE---- 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---- 76 (131)
+++=+|+|. |..+...++.+ +.+++++|.+++-++.+++. .. ++...+..+
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~l------------GA~V~a~D~~~~rle~aesl-GA-----------~~v~i~~~e~~~~ 222 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSL------------GAIVRAFDTRPEVAEQVESM-GA-----------EFLELDFEEEGGS 222 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHc-CC-----------eEEEecccccccc
Confidence 567788875 44455556654 45899999999888887752 11 111111000
Q ss_pred -------CC----------CC--CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 77 -------LP----------IE--SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 77 -------~~----------~~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.. +. ...+|+|+.......-+.+..+.+++.+.+||||+++.+-.
T Consensus 223 ~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 223 GDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred ccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 00 01 14589999977655444454446899999999999887644
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.21 Score=29.53 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=55.7
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+.+ ...+++.+|.+++.++.+++. .+.++.+|..+.. ..-+
T Consensus 3 I~G~g~~~~~i~~~L~~---------~~~~vvvid~d~~~~~~~~~~------------~~~~i~gd~~~~~~l~~a~i~ 61 (116)
T PF02254_consen 3 IIGYGRIGREIAEQLKE---------GGIDVVVIDRDPERVEELREE------------GVEVIYGDATDPEVLERAGIE 61 (116)
T ss_dssp EES-SHHHHHHHHHHHH---------TTSEEEEEESSHHHHHHHHHT------------TSEEEES-TTSHHHHHHTTGG
T ss_pred EEcCCHHHHHHHHHHHh---------CCCEEEEEECCcHHHHHHHhc------------ccccccccchhhhHHhhcCcc
Confidence 36778899999988862 245899999999887776543 3456777766542 2235
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++.+++... -......+....+-+.|...++..-
T Consensus 62 ~a~~vv~~~~---~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 62 KADAVVILTD---DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp CESEEEEESS---SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred ccCEEEEccC---CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 6787777432 1122233444556667777776543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.16 Score=35.96 Aligned_cols=75 Identities=17% Similarity=0.141 Sum_probs=55.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+..|+.+|.|.+-+.+....+.. ++.....+...+...-.++|++|..-.+..-..+.-...++.+.||||
T Consensus 191 gA~Vtild~n~~rl~~ldd~f~~---------rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpG 261 (371)
T COG0686 191 GADVTILDLNIDRLRQLDDLFGG---------RVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPG 261 (371)
T ss_pred CCeeEEEecCHHHHhhhhHhhCc---------eeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCC
Confidence 68899999998777776655533 566666665544333356899988766666667777788999999999
Q ss_pred cEEE
Q psy890 114 GRFL 117 (131)
Q Consensus 114 G~l~ 117 (131)
++++
T Consensus 262 sViv 265 (371)
T COG0686 262 SVIV 265 (371)
T ss_pred cEEE
Confidence 9987
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.089 Score=36.59 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=36.2
Q ss_pred ceeEEecccccC--CCCCCCeeEEEE--ccccc-c---c----------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 66 RLRFLEANAEEL--PIESDSYSAYTI--AFGIR-N---V----------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 66 ~~~~~~~d~~~~--~~~~~~~D~i~~--~~~l~-~---~----------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+-+++.+|..+. .++.++||+|++ ++... . . .-....+.++.++|||+|.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456777776553 356678999988 33220 0 0 01256889999999999999874
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.14 Score=34.72 Aligned_cols=80 Identities=11% Similarity=0.027 Sum_probs=49.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEecccccC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.+||||.|.--+ ..++..-. =+-+++|.|+++..++.|+..+..+ ++. ..+++....-..- +
T Consensus 81 ~~LDIGvGAnCI-YPliG~~e----------YgwrfvGseid~~sl~sA~~ii~~N~~l~----~~I~lr~qk~~~~if~ 145 (292)
T COG3129 81 RILDIGVGANCI-YPLIGVHE----------YGWRFVGSEIDSQSLSSAKAIISANPGLE----RAIRLRRQKDSDAIFN 145 (292)
T ss_pred EEEeeccCcccc-ccccccee----------ecceeecCccCHHHHHHHHHHHHcCcchh----hheeEEeccCcccccc
Confidence 578998876432 11211100 1458999999999999999988765 332 1455554332211 1
Q ss_pred ---CCCCCeeEEEEccccccc
Q psy890 79 ---IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~ 96 (131)
-..+.||...|+-.+|..
T Consensus 146 giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 146 GIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ccccccceeeeEecCCCcchh
Confidence 225789999998887754
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.53 Score=36.68 Aligned_cols=115 Identities=17% Similarity=0.078 Sum_probs=63.5
Q ss_pred ceeeeecccchhhHHHhhhhcC---C-CCCCCCCCCCCeEEEEeCCH---HHHHHHHHHhhh---------ccCCCC-C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDK---L-PPNTLSEHCAPHVTVADINR---AMLDVGEQRARD---------LFKVPV-P- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~---~-~~~~~~~~~~~~~~~~D~s~---~~~~~~~~~~~~---------~~~~~~-~- 63 (131)
+|+|+|-|+|.+.....+.+.. . +..+ ....+++.+|..+ +.+..+...++. ..++.. +
T Consensus 60 ~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~---~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 60 VIAETGFGTGLNFLATWQAFDQFRQRHPPAR---LKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred EEEecCcchHHHHHHHHHHHHHhhhhCCCCC---CceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 6999999999998888776621 1 1011 1246899999643 333333221110 000000 0
Q ss_pred -------CC--ceeEEecccccC-CCCCCCeeEEEEccc-cccccCH--HHHHHHHHHhccCCcEEEEE
Q psy890 64 -------NP--RLRFLEANAEEL-PIESDSYSAYTIAFG-IRNVTRI--DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 64 -------~~--~~~~~~~d~~~~-~~~~~~~D~i~~~~~-l~~~~~~--~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. ++++..+|+.+. +.-...+|+|+.-.. -..-+++ ..++.++.++++|||.+.-.
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 233455665442 211245899987532 2222222 57899999999999998754
|
|
| >KOG2352|consensus | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.17 Score=37.64 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=67.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.+|-+|-|+|.+...+...++ ..+++++++++.+++.+...+.-..- .+...+..|-.+.
T Consensus 298 ~~lvvg~ggG~l~sfl~~~~p-----------~~~i~~ve~dP~~l~va~q~f~f~q~-----~r~~V~i~dGl~~~~~~ 361 (482)
T KOG2352|consen 298 KQLVVGLGGGGLPSFLHMSLP-----------KFQITAVEIDPEMLEVATQYFGFMQS-----DRNKVHIADGLDFLQRT 361 (482)
T ss_pred cEEEEecCCCccccceeeecC-----------ccceeEEEEChhHhhccHhhhchhhh-----hhhhhhHhhchHHHHHH
Confidence 467788888999888877765 78999999999999999887643220 1233333332111
Q ss_pred C---CCCCCeeEEEEcc---cccccc------CHHHHHHHHHHhccCCcEEEEE
Q psy890 78 P---IESDSYSAYTIAF---GIRNVT------RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~---~~~~~~D~i~~~~---~l~~~~------~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. -.+..||+++.-- --|.+. -...++..++..|.|.|.+++-
T Consensus 362 ~k~~~~~~~~dvl~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~in 415 (482)
T KOG2352|consen 362 AKSQQEDICPDVLMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIIN 415 (482)
T ss_pred hhccccccCCcEEEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEE
Confidence 1 1345689987621 122222 1357788999999999998763
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.24 Score=36.08 Aligned_cols=60 Identities=18% Similarity=0.325 Sum_probs=49.6
Q ss_pred ceeEEecccccCC--CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 66 RLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 66 ~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+++++..++.+.- .+.+++|.++.+-...|++ ...+.++++.+.++|||++++-....+.
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~~ 339 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVPP 339 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCCC
Confidence 8999999988752 5678999999998888886 4678899999999999999987655443
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG0024|consensus | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.5 Score=33.65 Aligned_cols=100 Identities=13% Similarity=0.151 Sum_probs=62.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|=+|+|+ |-.+...++..+ ..++..+|.+++-++.|++ +-..... +..-.. +...+
T Consensus 172 ~vLV~GAGPIGl~t~l~Aka~G-----------A~~VVi~d~~~~Rle~Ak~-~Ga~~~~-----~~~~~~-~~~~~~~~ 233 (354)
T KOG0024|consen 172 KVLVLGAGPIGLLTGLVAKAMG-----------ASDVVITDLVANRLELAKK-FGATVTD-----PSSHKS-SPQELAEL 233 (354)
T ss_pred eEEEECCcHHHHHHHHHHHHcC-----------CCcEEEeecCHHHHHHHHH-hCCeEEe-----eccccc-cHHHHHHH
Confidence 577788875 555666677765 7899999999999999987 4321111 111000 11111
Q ss_pred ---CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 78 ---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
......+|+.+-..++ +..+......++++|.+.++.++.+.
T Consensus 234 v~~~~g~~~~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 234 VEKALGKKQPDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred HHhhccccCCCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 1223447888765443 34455667788999998888877654
|
|
| >KOG2651|consensus | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.17 Score=36.79 Aligned_cols=39 Identities=5% Similarity=-0.049 Sum_probs=32.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQ 52 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~ 52 (131)
.++|+|+|.|+++..+.-.+ +..|+++|-|....+.+++
T Consensus 156 ~vvD~GaG~G~LSr~lSl~y------------~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 156 QVVDVGAGQGHLSRFLSLGY------------GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred eeEEcCCCchHHHHHHhhcc------------CceEEEeccchHHHHHHHH
Confidence 47899999999999887764 5789999999877776644
|
|
| >KOG2671|consensus | Back alignment and domain information |
|---|
Probab=93.09 E-value=0.1 Score=37.36 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=69.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHH-------HHHHhhhccCCCCCCCceeEEecccc
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDV-------GEQRARDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (131)
|+|--.|||.+....+.- +.-++|.|++-.++.. .+.+++..+..+ +-+....+|..
T Consensus 212 vyDPFVGTGslLvsaa~F-------------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~---~fldvl~~D~s 275 (421)
T KOG2671|consen 212 VYDPFVGTGSLLVSAAHF-------------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSS---QFLDVLTADFS 275 (421)
T ss_pred EecCccccCceeeehhhh-------------cceeeccccchheeecccCCCcchhHhHHHhCCcc---hhhheeeeccc
Confidence 677778888876655554 6889999999988872 356677776543 23567788887
Q ss_pred cCCC-CCCCeeEEEE--ccccc----------------------cccC---------HHHHHHHHHHhccCCcEEEEE
Q psy890 76 ELPI-ESDSYSAYTI--AFGIR----------------------NVTR---------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 76 ~~~~-~~~~~D~i~~--~~~l~----------------------~~~~---------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+. ....||.|+| ++++. +.+. ....|.-..+.|..||++++.
T Consensus 276 n~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w 353 (421)
T KOG2671|consen 276 NPPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFW 353 (421)
T ss_pred CcchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEe
Confidence 7663 3457999998 33332 1110 134566677899999998874
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.12 Score=32.95 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=30.5
Q ss_pred CCCeeEEEEcccccccc--------C---HHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVT--------R---IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--------~---~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||.+.+...+.+.- + -.+.+.++.++|||||.+++.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~v 111 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGV 111 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEe
Confidence 46799998877775542 1 2577889999999999998853
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.86 Score=30.57 Aligned_cols=93 Identities=24% Similarity=0.323 Sum_probs=51.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
+||-.|+|+ |.....+++.. +.++++++.+++..+.+++.-... -+.....+... . .
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~------------g~~v~~~~~~~~~~~~~~~~g~~~--------~~~~~~~~~~~~~~~ 196 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAA------------GARVIVTDRSDEKLELAKELGADH--------VIDYKEEDLEEELRL 196 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCeEEEEcCCHHHHHHHHHhCCce--------eccCCcCCHHHHHHH
Confidence 467777765 55555555543 578999999887666654321100 01100001000 0 1
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|+++....- ...+..+.+.|+++|.++...
T Consensus 197 ~~~~~~d~vi~~~~~------~~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 197 TGGGGADVVIDAVGG------PETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred hcCCCCCEEEECCCC------HHHHHHHHHhcccCCEEEEEc
Confidence 123568999865331 134666778889999988754
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.085 Score=31.30 Aligned_cols=28 Identities=7% Similarity=-0.253 Sum_probs=21.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI 42 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~ 42 (131)
..+|+|||.|-+...|... +-.=+|+|.
T Consensus 61 ~FVDlGCGNGLLV~IL~~E-------------Gy~G~GiD~ 88 (112)
T PF07757_consen 61 GFVDLGCGNGLLVYILNSE-------------GYPGWGIDA 88 (112)
T ss_pred ceEEccCCchHHHHHHHhC-------------CCCcccccc
Confidence 3689999999887766664 556677775
|
; GO: 0008168 methyltransferase activity |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.31 E-value=1.5 Score=26.22 Aligned_cols=88 Identities=18% Similarity=0.323 Sum_probs=55.3
Q ss_pred cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C-CCCCCeeE
Q psy890 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P-IESDSYSA 86 (131)
Q Consensus 10 ~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~ 86 (131)
-|..+..+++.. +.+++++|.++.-.+.+++.-... -+.....|+.+ + . .....+|+
T Consensus 2 vG~~a~q~ak~~------------G~~vi~~~~~~~k~~~~~~~Ga~~--------~~~~~~~~~~~~i~~~~~~~~~d~ 61 (130)
T PF00107_consen 2 VGLMAIQLAKAM------------GAKVIATDRSEEKLELAKELGADH--------VIDYSDDDFVEQIRELTGGRGVDV 61 (130)
T ss_dssp HHHHHHHHHHHT------------TSEEEEEESSHHHHHHHHHTTESE--------EEETTTSSHHHHHHHHTTTSSEEE
T ss_pred hHHHHHHHHHHc------------CCEEEEEECCHHHHHHHHhhcccc--------cccccccccccccccccccccceE
Confidence 466777788774 489999999998887776432110 01111111111 1 1 22357999
Q ss_pred EEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 87 i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
|+-.-+ -...+....+.++++|.+.++-...
T Consensus 62 vid~~g------~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 62 VIDCVG------SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp EEESSS------SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred EEEecC------cHHHHHHHHHHhccCCEEEEEEccC
Confidence 987543 2457788899999999999875544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.18 E-value=1.8 Score=30.88 Aligned_cols=75 Identities=9% Similarity=0.066 Sum_probs=49.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++++|+-||-|-+..-+... +...+.++|+++..+..-+.+.+. ..+...|.....
T Consensus 4 ~~~idLFsG~GG~~lGf~~a------------gf~~~~a~Eid~~a~~ty~~n~~~----------~~~~~~di~~~~~~ 61 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA------------GFEIVFANEIDPPAVATYKANFPH----------GDIILGDIKELDGE 61 (328)
T ss_pred ceEEeeccCCchHHHHHHhc------------CCeEEEEEecCHHHHHHHHHhCCC----------CceeechHhhcChh
Confidence 57899999999887655443 245689999999888888777652 223344444332
Q ss_pred -CCCCCeeEEEEcccccccc
Q psy890 79 -IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~ 97 (131)
+....+|+++....+..++
T Consensus 62 ~~~~~~~DvligGpPCQ~FS 81 (328)
T COG0270 62 ALRKSDVDVLIGGPPCQDFS 81 (328)
T ss_pred hccccCCCEEEeCCCCcchh
Confidence 1111678888766665543
|
|
| >COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.17 E-value=1.1 Score=33.15 Aligned_cols=105 Identities=19% Similarity=0.257 Sum_probs=65.9
Q ss_pred eeeeec-ccchh--hHHHhhhhcCCCCCCCCCCCCCeEEEEeCC-HHHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 3 ILFYLV-FPGDI--AFRFLNYVDKLPPNTLSEHCAPHVTVADIN-RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 3 iLdig~-G~G~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
|+=+|- |+|-. +..++.++.+.. ...-++++|.- +.++++.+...... .+.|+..+....|
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk~~-------~kvllVaaD~~RpAA~eQL~~La~q~--------~v~~f~~~~~~~P 167 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKKKG-------KKVLLVAADTYRPAAIEQLKQLAEQV--------GVPFFGSGTEKDP 167 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHHcC-------CceEEEecccCChHHHHHHHHHHHHc--------CCceecCCCCCCH
Confidence 444544 55543 555666665321 24568888854 56677776665554 4555555433333
Q ss_pred ----------CCCCCeeEEEEccc--cccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 ----------IESDSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ----------~~~~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.....||+|+.--. +|.=..+-.-+.+++..++|.-.++++|-.
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam 223 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM 223 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 23467999998544 333345667789999999999999998754
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=92.01 E-value=2.5 Score=28.40 Aligned_cols=78 Identities=10% Similarity=0.036 Sum_probs=48.0
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc-cCCCCCCCeeEEEEccccccccCHHHHHHHHHHh--
Q psy890 33 CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE-ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRV-- 109 (131)
Q Consensus 33 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~-- 109 (131)
.+.+++++-++++.+...++.+...+..+ .++|+.++.. +.-..-..+|.++.--- ..+.. .++.+.
T Consensus 68 TgGR~vCIvp~~~~~~~~~~~l~~~~~~~----~vEfvvg~~~e~~~~~~~~iDF~vVDc~---~~d~~---~~vl~~~~ 137 (218)
T PF07279_consen 68 TGGRHVCIVPDEQSLSEYKKALGEAGLSD----VVEFVVGEAPEEVMPGLKGIDFVVVDCK---REDFA---ARVLRAAK 137 (218)
T ss_pred cCCeEEEEcCChhhHHHHHHHHhhccccc----cceEEecCCHHHHHhhccCCCEEEEeCC---chhHH---HHHHHHhc
Confidence 47899999999988888888887766653 6788887743 22112245677765322 22333 233333
Q ss_pred ccCCcEEEEEe
Q psy890 110 LKPGGRFLCLE 120 (131)
Q Consensus 110 L~p~G~l~~~~ 120 (131)
+.|.|-+++..
T Consensus 138 ~~~~GaVVV~~ 148 (218)
T PF07279_consen 138 LSPRGAVVVCY 148 (218)
T ss_pred cCCCceEEEEe
Confidence 44667776654
|
The function of this family is unknown. |
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.3 Score=31.11 Aligned_cols=80 Identities=16% Similarity=0.171 Sum_probs=47.2
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeE----EecccccCC---
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF----LEANAEELP--- 78 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~d~~~~~--- 78 (131)
+-.|+|.+...+++.+-.. ...+++.+|.++..+...+..+......+ ++++ +.+|+.+..
T Consensus 3 VTGa~GSIGseL~rql~~~--------~p~~lil~d~~E~~l~~l~~~l~~~~~~~----~v~~~~~~vigDvrd~~~l~ 70 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRY--------GPKKLILFDRDENKLYELERELRSRFPDP----KVRFEIVPVIGDVRDKERLN 70 (293)
T ss_dssp EETTTSHHHHHHHHHHHCC--------B-SEEEEEES-HHHHHHHHHHCHHHC--T----TCEEEEE--CTSCCHHHHHH
T ss_pred EEccccHHHHHHHHHHHhc--------CCCeEEEeCCChhHHHHHHHHHhhccccc----CcccccCceeecccCHHHHH
Confidence 4567889999998887522 13689999999999998888875332111 4443 477776542
Q ss_pred --CCCCCeeEEEEcccccccc
Q psy890 79 --IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~ 97 (131)
+.....|+|+-...+-|.+
T Consensus 71 ~~~~~~~pdiVfHaAA~KhVp 91 (293)
T PF02719_consen 71 RIFEEYKPDIVFHAAALKHVP 91 (293)
T ss_dssp HHTT--T-SEEEE------HH
T ss_pred HHHhhcCCCEEEEChhcCCCC
Confidence 4556799999888877665
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.84 Score=35.28 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=57.7
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 83 (131)
||.|+.+..+++.+.+ .+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+.
T Consensus 406 ~G~Gr~G~~va~~L~~---------~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~ 464 (601)
T PRK03659 406 VGFGRFGQVIGRLLMA---------NKMRITVLERDISAVNLMRKY------------GYKVYYGDATQLELLRAAGAEK 464 (601)
T ss_pred ecCchHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHhC------------CCeEEEeeCCCHHHHHhcCCcc
Confidence 7888899988887652 357899999999888877531 3456777876643 12346
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.|.+++... + ++....+.+..+.+.|+..++..-.+
T Consensus 465 A~~vv~~~~--d-~~~n~~i~~~~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 465 AEAIVITCN--E-PEDTMKIVELCQQHFPHLHILARARG 500 (601)
T ss_pred CCEEEEEeC--C-HHHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 787776421 1 11122344445667788887765433
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=91.81 E-value=1 Score=34.13 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=27.7
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..+|+|+..-.+..-+.+.-..+++.+.||||++++=
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 4699998877655555555567788899999999763
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG0821|consensus | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.28 Score=33.17 Aligned_cols=57 Identities=16% Similarity=0.126 Sum_probs=41.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.+++||.|.|..+..+++. ...++..++++..++.-.+-..+... .++.++..|+..
T Consensus 53 ~v~eIgPgpggitR~il~a------------~~~RL~vVE~D~RFip~LQ~L~EAa~------~~~~IHh~D~LR 109 (326)
T KOG0821|consen 53 YVYEIGPGPGGITRSILNA------------DVARLLVVEKDTRFIPGLQMLSEAAP------GKLRIHHGDVLR 109 (326)
T ss_pred eeEEecCCCCchhHHHHhc------------chhheeeeeeccccChHHHHHhhcCC------cceEEeccccce
Confidence 5789999999999999886 35689999999887776654444322 156666666543
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.66 E-value=0.99 Score=31.54 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=52.0
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEe-ccccc-C-
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLE-ANAEE-L- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~-~- 77 (131)
.||..|+| .|..+..+++.. +.++++++.++...+.+++. +.. .+.... .+... .
T Consensus 168 ~vli~g~g~vG~~~~~la~~~------------G~~V~~~~~s~~~~~~~~~~----g~~-----~~~~~~~~~~~~~~~ 226 (338)
T cd08254 168 TVLVIGLGGLGLNAVQIAKAM------------GAAVIAVDIKEEKLELAKEL----GAD-----EVLNSLDDSPKDKKA 226 (338)
T ss_pred EEEEECCcHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHHh----CCC-----EEEcCCCcCHHHHHH
Confidence 35555654 355566666653 46799999998877766431 111 110000 00000 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+++..... ...+.++.+.|+++|.++...
T Consensus 227 ~~~~~~~D~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 263 (338)
T cd08254 227 AGLGGGFDVIFDFVGT------QPTFEDAQKAVKPGGRIVVVG 263 (338)
T ss_pred HhcCCCceEEEECCCC------HHHHHHHHHHhhcCCEEEEEC
Confidence 1234568988764321 345778889999999998754
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.3 Score=32.95 Aligned_cols=51 Identities=22% Similarity=0.408 Sum_probs=31.2
Q ss_pred eEEecccccC--CCCCCCeeEEEEc--ccc--cc-----c-----cC-HHHHHHHHHHhccCCcEEEE
Q psy890 68 RFLEANAEEL--PIESDSYSAYTIA--FGI--RN-----V-----TR-IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 68 ~~~~~d~~~~--~~~~~~~D~i~~~--~~l--~~-----~-----~~-~~~~l~~~~~~L~p~G~l~~ 118 (131)
+++.+|..+. .++++++|+|++. +.+ .. + .+ ....+.++.|+|||||.+++
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~i 70 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVS 70 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3455554433 3566777877774 211 00 0 01 24778999999999998875
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=91.04 E-value=2 Score=30.17 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=48.9
Q ss_pred eeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 3 iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
||-.|+|. |..+..+++..+ ..++++++.++...+.+++. +... -+.....+........
T Consensus 169 VLI~g~g~vG~~~~~lak~~G-----------~~~v~~~~~s~~~~~~~~~~----g~~~----vi~~~~~~~~~~~~~~ 229 (339)
T cd08232 169 VLVTGAGPIGALVVAAARRAG-----------AAEIVATDLADAPLAVARAM----GADE----TVNLARDPLAAYAADK 229 (339)
T ss_pred EEEECCCHHHHHHHHHHHHcC-----------CcEEEEECCCHHHHHHHHHc----CCCE----EEcCCchhhhhhhccC
Confidence 44455543 445555555532 22788998888777654432 1100 0100000111111112
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+++..... ...+.++.+.|+++|+++.+.
T Consensus 230 ~~vd~vld~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 230 GDFDVVFEASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCccEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 358999765331 234677889999999988653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.78 E-value=1.1 Score=27.85 Aligned_cols=39 Identities=13% Similarity=-0.003 Sum_probs=24.1
Q ss_pred eeecccc--hhhHHHhh-hhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH
Q psy890 5 FYLVFPG--DIAFRFLN-YVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 5 dig~G~G--~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
|+|++.| ..+..++. ... +..+++++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~----------~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG----------PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS------------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHhHH
Confidence 7999999 44443332 222 367899999999999998888
|
; PDB: 2PY6_A. |
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.68 E-value=3.7 Score=28.87 Aligned_cols=100 Identities=16% Similarity=0.069 Sum_probs=52.8
Q ss_pred Cceeeeeccc--chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH--hhhccCCCCCCCceeEEeccccc
Q psy890 1 MYILFYLVFP--GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR--ARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
|+|+-+|+|. |.++..|.+. +..|+.++-+.+.++..++. +...... ...........
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-------------G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g-----~~~~~~~~~~~ 64 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-------------GLPVRLILRDRQRLAAYQQAGGLTLVEQG-----QASLYAIPAET 64 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-------------CCCeEEEEechHHHHHHhhcCCeEEeeCC-----cceeeccCCCC
Confidence 6778888763 2333333332 45788999876555555432 1110000 11111111110
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+...+.||+|+..- -..+....+..+..++.++..++...-+
T Consensus 65 -~~~~~~~D~viv~v---K~~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 65 -ADAAEPIHRLLLAC---KAYDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred -cccccccCEEEEEC---CHHhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 11234789887632 1124567788899999999988776533
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.67 Score=33.62 Aligned_cols=76 Identities=20% Similarity=0.103 Sum_probs=37.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+.+++++|.+++..+.+...+.. .+.....+...+.-.-..+|+|+..-.+...+.+.-+-.+..+.++|+
T Consensus 190 Ga~V~v~d~~~~~~~~l~~~~g~---------~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~~~l~~mk~g 260 (370)
T TIGR00518 190 GATVTILDINIDRLRQLDAEFGG---------RIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSNSLVAQMKPG 260 (370)
T ss_pred CCeEEEEECCHHHHHHHHHhcCc---------eeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCHHHHhcCCCC
Confidence 45899999988665554433311 111111111111101135799997543322211211225555678999
Q ss_pred cEEEE
Q psy890 114 GRFLC 118 (131)
Q Consensus 114 G~l~~ 118 (131)
++++-
T Consensus 261 ~vIvD 265 (370)
T TIGR00518 261 AVIVD 265 (370)
T ss_pred CEEEE
Confidence 88764
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=90.28 E-value=0.55 Score=32.38 Aligned_cols=37 Identities=5% Similarity=0.010 Sum_probs=28.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
.++|+|||.|.++..+...+.... .....++.+|-..
T Consensus 21 ~~vEfGaGrg~LS~~v~~~~~~~~------~~~~~~~lIDR~~ 57 (259)
T PF05206_consen 21 CFVEFGAGRGELSRWVAQALQEDK------PSNSRFVLIDRAS 57 (259)
T ss_pred EEEEECCCchHHHHHHHHHhhhcc------cCCccEEEEecCc
Confidence 479999999999999999875320 0257899999755
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=89.81 E-value=2.8 Score=25.36 Aligned_cols=89 Identities=15% Similarity=0.044 Sum_probs=54.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|+|+|.|-=......++. .+..++++|+++. +.+ + -++++..|+.+....
T Consensus 16 kVvEVGiG~~~~VA~~L~e------------~g~dv~atDI~~~-------~a~----~-----g~~~v~DDitnP~~~i 67 (129)
T COG1255 16 KVVEVGIGFFLDVAKRLAE------------RGFDVLATDINEK-------TAP----E-----GLRFVVDDITNPNISI 67 (129)
T ss_pred cEEEEccchHHHHHHHHHH------------cCCcEEEEecccc-------cCc----c-----cceEEEccCCCccHHH
Confidence 5788888764332222222 2578999999874 111 1 578888888775422
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
-...|+|.+ +...+++.+.+-.+.+.++- .+++...+.
T Consensus 68 Y~~A~lIYS---iRpppEl~~~ildva~aVga--~l~I~pL~G 105 (129)
T COG1255 68 YEGADLIYS---IRPPPELQSAILDVAKAVGA--PLYIKPLTG 105 (129)
T ss_pred hhCccceee---cCCCHHHHHHHHHHHHhhCC--CEEEEecCC
Confidence 134688876 55566777777777776654 344444443
|
|
| >KOG0780|consensus | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.7 Score=31.92 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=51.5
Q ss_pred CCeEEEEeCC-HHHHHHHHHHhhhccCCCCCCCceeEEe----cccccCC------CCCCCeeEEEEcccccccc--CHH
Q psy890 34 APHVTVADIN-RAMLDVGEQRARDLFKVPVPNPRLRFLE----ANAEELP------IESDSYSAYTIAFGIRNVT--RID 100 (131)
Q Consensus 34 ~~~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~~~------~~~~~~D~i~~~~~l~~~~--~~~ 100 (131)
...+++.|.- ..+..+.+.+.... ++.|+. .|..... +..+.||+|++--.=+|-. .+-
T Consensus 131 K~~LvcaDTFRagAfDQLkqnA~k~--------~iP~ygsyte~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLf 202 (483)
T KOG0780|consen 131 KVALVCADTFRAGAFDQLKQNATKA--------RVPFYGSYTEADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLF 202 (483)
T ss_pred ceeEEeecccccchHHHHHHHhHhh--------CCeeEecccccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHH
Confidence 4567888843 34555666555544 343433 2222221 5568899999966544433 455
Q ss_pred HHHHHHHHhccCCcEEEEEecc
Q psy890 101 KALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 101 ~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.-+.++.+.++|+-++++.|-+
T Consensus 203 eEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 203 EEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHHHHhhcCCCeEEEEEecc
Confidence 6688899999999999998754
|
|
| >PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences | Back alignment and domain information |
|---|
Probab=89.19 E-value=1.6 Score=36.52 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=54.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.+||+|.|.-. .++..++ ....++.+|.-+ -......|.. ...|+..|..... ..
T Consensus 825 ~~lDLGTGPE~---RiLsliP----------~~~pvtmvD~RP-------~ae~m~~w~t----~T~y~~~DYl~~~~~~ 880 (1289)
T PF06016_consen 825 HWLDLGTGPEC---RILSLIP----------PDTPVTMVDTRP-------FAEPMNCWNT----QTQYIQADYLSDAWWN 880 (1289)
T ss_dssp CEEEET--TT----CHHHCS-----------TTSEEEEEESS---------SSSCCCCST----TEEEEES-TTSCCGGC
T ss_pred eEEEccCCccc---eeeeccC----------CCCceEEEecCC-------cccccchhhh----cceeeeeccccceeEe
Confidence 47888888742 2334443 467899999855 1223344443 7899999987755 34
Q ss_pred CCCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcE
Q psy890 81 SDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~ 115 (131)
...+|.+.|.+.|..- -++...++++.+.+++.|.
T Consensus 881 ~~~~D~vtailSLGAAaA~a~~tl~~~l~~~l~~~~~~~~ 920 (1289)
T PF06016_consen 881 GTPFDAVTAILSLGAAAASANVTLDAGLQQFLSQCVQANV 920 (1289)
T ss_dssp C---SEEEECTCHHHHHHHCT--HHHHHHHHHHHHHCTT-
T ss_pred cCCCCEEEEEeeehhhhhcCCCcHHHHHHHHHHHHHhCCc
Confidence 5679999998877432 2678889999999988875
|
The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=89.09 E-value=2.4 Score=28.20 Aligned_cols=102 Identities=16% Similarity=0.202 Sum_probs=63.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.|+|+|.--|..+...+...-.. + ...+|.++|++-.....+... . +.+.++.++-.+..
T Consensus 72 lvIE~Gs~~GGSal~fA~~m~s~--G-----q~~kvl~vdIdi~~~~p~a~e-----~-----p~i~f~egss~dpai~e 134 (237)
T COG3510 72 LVIEFGSRHGGSALFFANMMISI--G-----QPFKVLGVDIDIKPLDPAARE-----V-----PDILFIEGSSTDPAIAE 134 (237)
T ss_pred eeEeeccccCchhhhhhHhHHhc--C-----CCceEEEEecccCcCChhhhc-----C-----CCeEEEeCCCCCHHHHH
Confidence 47899987776655555532100 0 247899999986544433222 1 27999998866543
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+.+.--+.++--.-|++....+.|+.+.++|..|.++++-|
T Consensus 135 qi~~~~~~y~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 135 QIRRLKNEYPKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred HHHHHhcCCCcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEec
Confidence 122222334444445666666777888889999999987644
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=89.04 E-value=2.3 Score=32.55 Aligned_cols=89 Identities=16% Similarity=0.096 Sum_probs=54.1
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+.+ .+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+
T Consensus 422 I~G~G~~G~~la~~L~~---------~g~~vvvId~d~~~~~~~~~~------------g~~~i~GD~~~~~~L~~a~i~ 480 (558)
T PRK10669 422 LVGYGRVGSLLGEKLLA---------AGIPLVVIETSRTRVDELRER------------GIRAVLGNAANEEIMQLAHLD 480 (558)
T ss_pred EECCChHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHHC------------CCeEEEcCCCCHHHHHhcCcc
Confidence 37888899999998752 256899999999887777531 4566777876632 1224
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+|.++..-. + ++....+....+...|+-.++..
T Consensus 481 ~a~~viv~~~--~-~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 481 CARWLLLTIP--N-GYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred ccCEEEEEcC--C-hHHHHHHHHHHHHHCCCCeEEEE
Confidence 6786655311 0 01112233344555677666553
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=88.94 E-value=2.4 Score=31.84 Aligned_cols=42 Identities=12% Similarity=0.025 Sum_probs=32.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
++++|+-||.|-++.-+-.. +...+.++|+++.+.+.-+.++
T Consensus 89 ~~~iDLFsGiGGl~lGfe~a------------G~~~v~a~Eid~~A~~TY~~N~ 130 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAI------------GGQCVFTSEWNKHAVRTYKANW 130 (467)
T ss_pred ceEEEeCcCccHHHHHHHHc------------CCEEEEEEechHHHHHHHHHHc
Confidence 47899999999888777443 2456889999998888777765
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.77 E-value=3.4 Score=28.91 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=26.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR 44 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~ 44 (131)
|..+|+|+-+|.|+..+.+. +..|+++|-..
T Consensus 213 M~avDLGAcPGGWTyqLVkr-------------~m~V~aVDng~ 243 (358)
T COG2933 213 MWAVDLGACPGGWTYQLVKR-------------NMRVYAVDNGP 243 (358)
T ss_pred ceeeecccCCCccchhhhhc-------------ceEEEEeccch
Confidence 67899999999999999886 78999999644
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=2.3 Score=33.11 Aligned_cols=89 Identities=10% Similarity=0.025 Sum_probs=54.7
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 83 (131)
||.|+.+..+++.+.+ .+.+++.+|.+++.++.+++. ....+.+|..+.. ..-+.
T Consensus 406 ~G~Gr~G~~va~~L~~---------~g~~vvvID~d~~~v~~~~~~------------g~~v~~GDat~~~~L~~agi~~ 464 (621)
T PRK03562 406 AGFGRFGQIVGRLLLS---------SGVKMTVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLESAGAAK 464 (621)
T ss_pred EecChHHHHHHHHHHh---------CCCCEEEEECCHHHHHHHHhc------------CCeEEEEeCCCHHHHHhcCCCc
Confidence 6777788888877652 256899999999988877541 3456777876643 12346
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+|.+++... -++....+....+.+.|+-.++...
T Consensus 465 A~~vvv~~~---d~~~n~~i~~~ar~~~p~~~iiaRa 498 (621)
T PRK03562 465 AEVLINAID---DPQTSLQLVELVKEHFPHLQIIARA 498 (621)
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 787776421 1112223334455566776665533
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=88.05 E-value=1.9 Score=26.45 Aligned_cols=75 Identities=11% Similarity=0.009 Sum_probs=40.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
++|=+|+ |..+..++..+... ...+++.++-+.+-.+...+.+... .+.+...+ +.....
T Consensus 14 ~vlviGa--Gg~ar~v~~~L~~~--------g~~~i~i~nRt~~ra~~l~~~~~~~--------~~~~~~~~--~~~~~~ 73 (135)
T PF01488_consen 14 RVLVIGA--GGAARAVAAALAAL--------GAKEITIVNRTPERAEALAEEFGGV--------NIEAIPLE--DLEEAL 73 (135)
T ss_dssp EEEEESS--SHHHHHHHHHHHHT--------TSSEEEEEESSHHHHHHHHHHHTGC--------SEEEEEGG--GHCHHH
T ss_pred EEEEECC--HHHHHHHHHHHHHc--------CCCEEEEEECCHHHHHHHHHHcCcc--------ccceeeHH--HHHHHH
Confidence 3555665 44555555544311 2456999999876655555555111 34444433 322112
Q ss_pred CCeeEEEEccccccc
Q psy890 82 DSYSAYTIAFGIRNV 96 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~ 96 (131)
..+|+|+..-...+.
T Consensus 74 ~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 74 QEADIVINATPSGMP 88 (135)
T ss_dssp HTESEEEE-SSTTST
T ss_pred hhCCeEEEecCCCCc
Confidence 469999987665443
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=87.93 E-value=5.8 Score=28.14 Aligned_cols=71 Identities=10% Similarity=0.074 Sum_probs=44.9
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-CC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-ES 81 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~ 81 (131)
++|+-||.|-++.-+.+. +...+.++|+++.+.+..+.++.. .....|+.++.. .-
T Consensus 1 vidLF~G~GG~~~Gl~~a------------G~~~~~a~e~~~~a~~ty~~N~~~-----------~~~~~Di~~~~~~~~ 57 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA------------GFKCVFASEIDKYAQKTYEANFGN-----------KVPFGDITKISPSDI 57 (315)
T ss_pred CEEEecCccHHHHHHHHc------------CCeEEEEEeCCHHHHHHHHHhCCC-----------CCCccChhhhhhhhC
Confidence 588999999888766543 233467899999998888877643 122345444421 11
Q ss_pred CCeeEEEEccccccc
Q psy890 82 DSYSAYTIAFGIRNV 96 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~ 96 (131)
..+|+++....+..+
T Consensus 58 ~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 58 PDFDILLGGFPCQPF 72 (315)
T ss_pred CCcCEEEecCCCccc
Confidence 247888776554433
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=87.92 E-value=4.6 Score=28.76 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=24.5
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+-.-+- ...+.+..+.|+++|.++++-.
T Consensus 237 ~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 237 GEFDLIIEATGV------PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred CCCCEEEECcCC------HHHHHHHHHHccCCcEEEEEec
Confidence 458988775431 2356788899999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG1209|consensus | Back alignment and domain information |
|---|
Probab=87.85 E-value=4 Score=27.76 Aligned_cols=74 Identities=8% Similarity=-0.029 Sum_probs=45.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
.||-.||.+|.+...++++... .+..|+++--+.+-.......+ .++...+|..+.
T Consensus 9 ~VlItgcs~GGIG~ala~ef~~---------~G~~V~AtaR~~e~M~~L~~~~-----------gl~~~kLDV~~~~~V~ 68 (289)
T KOG1209|consen 9 KVLITGCSSGGIGYALAKEFAR---------NGYLVYATARRLEPMAQLAIQF-----------GLKPYKLDVSKPEEVV 68 (289)
T ss_pred eEEEeecCCcchhHHHHHHHHh---------CCeEEEEEccccchHhhHHHhh-----------CCeeEEeccCChHHHH
Confidence 4788999999999999888641 3567777765443332222111 233444444332
Q ss_pred -------CCCCCCeeEEEEcccccc
Q psy890 78 -------PIESDSYSAYTIAFGIRN 95 (131)
Q Consensus 78 -------~~~~~~~D~i~~~~~l~~ 95 (131)
.++.++.|+.+.+.+..+
T Consensus 69 ~v~~evr~~~~Gkld~L~NNAG~~C 93 (289)
T KOG1209|consen 69 TVSGEVRANPDGKLDLLYNNAGQSC 93 (289)
T ss_pred HHHHHHhhCCCCceEEEEcCCCCCc
Confidence 146788999988776543
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=86.92 E-value=10 Score=27.96 Aligned_cols=93 Identities=13% Similarity=0.127 Sum_probs=54.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+|+-+|+ |..+..+++.+.. .+.+++++|.+++.++.+++.. .+.++.+|..+..
T Consensus 1 m~viIiG~--G~ig~~~a~~L~~---------~g~~v~vid~~~~~~~~~~~~~-----------~~~~~~gd~~~~~~l 58 (453)
T PRK09496 1 MKIIIVGA--GQVGYTLAENLSG---------ENNDVTVIDTDEERLRRLQDRL-----------DVRTVVGNGSSPDVL 58 (453)
T ss_pred CEEEEECC--CHHHHHHHHHHHh---------CCCcEEEEECCHHHHHHHHhhc-----------CEEEEEeCCCCHHHH
Confidence 56666665 7788888887642 2568999999998766655321 4556666655421
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..-+.+|.|++...- .+....+....+.+.|.-.+++
T Consensus 59 ~~~~~~~a~~vi~~~~~---~~~n~~~~~~~r~~~~~~~ii~ 97 (453)
T PRK09496 59 REAGAEDADLLIAVTDS---DETNMVACQIAKSLFGAPTTIA 97 (453)
T ss_pred HHcCCCcCCEEEEecCC---hHHHHHHHHHHHHhcCCCeEEE
Confidence 123467888774321 1223334444555545444443
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=86.87 E-value=8.2 Score=27.42 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=40.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
..+++++|.+++-++.+++ .+ .. ... + +.. ....+|+|+-.-+- ......+.+..+.|+++
T Consensus 189 ~~~vi~~~~~~~k~~~a~~----~~-------~~-~~~-~--~~~-~~~g~d~viD~~G~---~~~~~~~~~~~~~l~~~ 249 (341)
T cd08237 189 ESKLVVFGKHQEKLDLFSF----AD-------ET-YLI-D--DIP-EDLAVDHAFECVGG---RGSQSAINQIIDYIRPQ 249 (341)
T ss_pred CCcEEEEeCcHhHHHHHhh----cC-------ce-eeh-h--hhh-hccCCcEEEECCCC---CccHHHHHHHHHhCcCC
Confidence 4679999998877766653 11 11 111 1 111 11147888764331 11245678888999999
Q ss_pred cEEEEEec
Q psy890 114 GRFLCLEF 121 (131)
Q Consensus 114 G~l~~~~~ 121 (131)
|+++++-.
T Consensus 250 G~iv~~G~ 257 (341)
T cd08237 250 GTIGLMGV 257 (341)
T ss_pred cEEEEEee
Confidence 99987654
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=86.84 E-value=5.9 Score=27.70 Aligned_cols=84 Identities=20% Similarity=0.103 Sum_probs=47.1
Q ss_pred eeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 3 iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|=+|+| -|..+..+++..+ ...+.++|.+++.++.+.+. . -+ |..+. ..
T Consensus 148 vlV~G~G~vG~~a~q~ak~~G-----------~~~v~~~~~~~~rl~~a~~~----~-------~i-----~~~~~--~~ 198 (308)
T TIGR01202 148 DLIVGHGTLGRLLARLTKAAG-----------GSPPAVWETNPRRRDGATGY----E-------VL-----DPEKD--PR 198 (308)
T ss_pred EEEECCCHHHHHHHHHHHHcC-----------CceEEEeCCCHHHHHhhhhc----c-------cc-----Chhhc--cC
Confidence 4445653 3445555555542 33477788877655544321 1 00 11110 12
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+-.-+- ...+.++.+.|+++|+++++-.
T Consensus 199 ~g~Dvvid~~G~------~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 199 RDYRAIYDASGD------PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred CCCCEEEECCCC------HHHHHHHHHhhhcCcEEEEEee
Confidence 458988775431 2356778889999999987643
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.62 E-value=6.9 Score=26.29 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=49.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|++|-.|+++| +...+++.+. .+.+++.++.+++-++...+.++..+.. .+.++..|+.+..
T Consensus 1 ~~vlItGas~G-IG~aia~~l~----------~g~~Vil~~r~~~~~~~~~~~l~~~~~~-----~~~~~~~Dv~d~~~v 64 (246)
T PRK05599 1 MSILILGGTSD-IAGEIATLLC----------HGEDVVLAARRPEAAQGLASDLRQRGAT-----SVHVLSFDAQDLDTH 64 (246)
T ss_pred CeEEEEeCccH-HHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHHHhccCC-----ceEEEEcccCCHHHH
Confidence 56777777654 5666666654 2567888888887777666666543311 4677788876642
Q ss_pred --------CCCCCeeEEEEcccc
Q psy890 79 --------IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 --------~~~~~~D~i~~~~~l 93 (131)
...+..|+++.+.+.
T Consensus 65 ~~~~~~~~~~~g~id~lv~nag~ 87 (246)
T PRK05599 65 RELVKQTQELAGEISLAVVAFGI 87 (246)
T ss_pred HHHHHHHHHhcCCCCEEEEecCc
Confidence 012568999886654
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.10 E-value=7.3 Score=30.09 Aligned_cols=81 Identities=15% Similarity=0.154 Sum_probs=59.9
Q ss_pred eeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C
Q psy890 5 FYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I 79 (131)
Q Consensus 5 dig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~ 79 (131)
=+-.|+|.+...+++.+-+.. ..++..+|.++..+......+...... .++.++.+|..+.. +
T Consensus 254 LVTGagGSiGsel~~qil~~~--------p~~i~l~~~~E~~~~~i~~el~~~~~~----~~~~~~igdVrD~~~~~~~~ 321 (588)
T COG1086 254 LVTGGGGSIGSELCRQILKFN--------PKEIILFSRDEYKLYLIDMELREKFPE----LKLRFYIGDVRDRDRVERAM 321 (588)
T ss_pred EEeCCCCcHHHHHHHHHHhcC--------CCEEEEecCchHHHHHHHHHHHhhCCC----cceEEEecccccHHHHHHHH
Confidence 356688899999988765322 468999999998888887777664212 17889999987753 4
Q ss_pred CCCCeeEEEEcccccccc
Q psy890 80 ESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~ 97 (131)
.+.+.|+|+-...+-|.|
T Consensus 322 ~~~kvd~VfHAAA~KHVP 339 (588)
T COG1086 322 EGHKVDIVFHAAALKHVP 339 (588)
T ss_pred hcCCCceEEEhhhhccCc
Confidence 456789999888877776
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=7.8 Score=25.59 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=58.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+||-.|+ +|.+...+++.+.+ .+.+|++++.+++-.....+.....+ ++.++..|+.+..
T Consensus 7 ~vlItGa-~g~iG~~~a~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dl~~~~~~~ 69 (238)
T PRK05786 7 KVAIIGV-SEGLGYAVAYFALK---------EGAQVCINSRNENKLKRMKKTLSKYG-------NIHYVVGDVSSTESAR 69 (238)
T ss_pred EEEEECC-CchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC-------CeEEEECCCCCHHHHH
Confidence 3555555 45566666665531 25689999988876655544443322 5677778766532
Q ss_pred --C-----CCCCeeEEEEcccccccc-----------------CHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 --I-----ESDSYSAYTIAFGIRNVT-----------------RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 --~-----~~~~~D~i~~~~~l~~~~-----------------~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+ .-+.+|.++.+....... .....++.+.+.++++|.++++..
T Consensus 70 ~~~~~~~~~~~~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 70 NVIEKAAKVLNAIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 0 013468777665432111 112335556667777888777643
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=85.86 E-value=2.9 Score=25.66 Aligned_cols=90 Identities=12% Similarity=0.023 Sum_probs=45.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|+|+|.|.-......++.. +..++++|+.+. ..+ . .+.++..|+.+....
T Consensus 16 kiVEVGiG~~~~vA~~L~~~------------G~dV~~tDi~~~-------~a~--~-------g~~~v~DDif~P~l~i 67 (127)
T PF03686_consen 16 KIVEVGIGFNPEVAKKLKER------------GFDVIATDINPR-------KAP--E-------GVNFVVDDIFNPNLEI 67 (127)
T ss_dssp EEEEET-TT--HHHHHHHHH------------S-EEEEE-SS-S--------------------STTEE---SSS--HHH
T ss_pred cEEEECcCCCHHHHHHHHHc------------CCcEEEEECccc-------ccc--c-------CcceeeecccCCCHHH
Confidence 58899998765544444442 589999999885 111 1 567788887764321
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
-...|+|.+.. -.++++..+.++.+.. |.-+++..++..
T Consensus 68 Y~~a~lIYSiR---PP~El~~~il~lA~~v--~adlii~pL~~e 106 (127)
T PF03686_consen 68 YEGADLIYSIR---PPPELQPPILELAKKV--GADLIIRPLGGE 106 (127)
T ss_dssp HTTEEEEEEES-----TTSHHHHHHHHHHH--T-EEEEE-BTTB
T ss_pred hcCCcEEEEeC---CChHHhHHHHHHHHHh--CCCEEEECCCCC
Confidence 14679988743 3456666666666554 345666555543
|
; PDB: 2K4M_A. |
| >KOG1201|consensus | Back alignment and domain information |
|---|
Probab=85.82 E-value=9.1 Score=27.08 Aligned_cols=77 Identities=13% Similarity=0.030 Sum_probs=51.4
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|--|+|+| +.+.++..+.+ .+.++...|++++..+...+.++..+ ++..+..|..+..
T Consensus 41 vLITGgg~G-lGr~ialefa~---------rg~~~vl~Din~~~~~etv~~~~~~g-------~~~~y~cdis~~eei~~ 103 (300)
T KOG1201|consen 41 VLITGGGSG-LGRLIALEFAK---------RGAKLVLWDINKQGNEETVKEIRKIG-------EAKAYTCDISDREEIYR 103 (300)
T ss_pred EEEeCCCch-HHHHHHHHHHH---------hCCeEEEEeccccchHHHHHHHHhcC-------ceeEEEecCCCHHHHHH
Confidence 455566665 34444443321 36789999999988888877777655 6777888876542
Q ss_pred ------CCCCCeeEEEEccccccc
Q psy890 79 ------IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~~~ 96 (131)
..-+..|+++.+.++...
T Consensus 104 ~a~~Vk~e~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 104 LAKKVKKEVGDVDILVNNAGIVTG 127 (300)
T ss_pred HHHHHHHhcCCceEEEeccccccC
Confidence 123578999998876543
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=85.52 E-value=12 Score=27.33 Aligned_cols=114 Identities=14% Similarity=0.103 Sum_probs=61.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC----CHHHHHHHHHHhhhccCCCCCCCceeEEec---cc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI----NRAMLDVGEQRARDLFKVPVPNPRLRFLEA---NA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~----s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~ 74 (131)
.|+|+|.|.|.-=..+++.+...+ ..++..++|+++. +...++...+++....-.- .-..+|... +.
T Consensus 113 HIID~~i~~G~QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~l--gv~fef~~v~~~~~ 186 (374)
T PF03514_consen 113 HIIDFGIGFGVQWPSLIQALASRP----GGPPSLRITGIGPPNSGSADELQETGRRLAEFARSL--GVPFEFHPVVVESL 186 (374)
T ss_pred EEEeccCCcchHHHHHHHHHhcCC----CCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHc--CccEEEEecccCch
Confidence 589999999855444555554333 1125789999999 7777777776655421000 002344442 22
Q ss_pred ccCC-----CCCCCeeEEEEcccccccc-------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EELP-----IESDSYSAYTIAFGIRNVT-------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~~-----~~~~~~D~i~~~~~l~~~~-------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.+. ...+..=+|-+.+.+|++. ++...+-...+.|+|.-++ ++|..
T Consensus 187 e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv-~~E~e 245 (374)
T PF03514_consen 187 EDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVV-LVEQE 245 (374)
T ss_pred hhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEE-EEeec
Confidence 2221 2233333444556667764 2223344455678997444 44443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily | Back alignment and domain information |
|---|
Probab=85.50 E-value=3.4 Score=26.96 Aligned_cols=41 Identities=10% Similarity=0.100 Sum_probs=28.9
Q ss_pred CCCCeeEEEEcccccccc------------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT------------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~------------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+..|+|++++++..+. ++++.+..+.++|+|...++...
T Consensus 47 ~gg~~DVIi~Ns~LWDl~ry~~~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~t 99 (183)
T cd01842 47 EGGRLDLVIMNSCLWDLSRYQRNSMKTYRENLERLFSKLDSVLPIECLIVWNT 99 (183)
T ss_pred cCCceeEEEEecceecccccCCCCHHHHHHHHHHHHHHHHhhCCCccEEEEec
Confidence 445689999999987653 35666667777777777666543
|
SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.78 E-value=5.2 Score=29.40 Aligned_cols=72 Identities=15% Similarity=0.126 Sum_probs=46.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
|+||=+|| |..+..++..+-.. ...+++..|.|.+.+.++...... +++....|+.+.+ .
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~--------~d~~V~iAdRs~~~~~~i~~~~~~---------~v~~~~vD~~d~~al 62 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQN--------GDGEVTIADRSKEKCARIAELIGG---------KVEALQVDAADVDAL 62 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhC--------CCceEEEEeCCHHHHHHHHhhccc---------cceeEEecccChHHH
Confidence 57888999 44555555553210 237999999998877777655422 6777888877653 1
Q ss_pred --CCCCeeEEEEcc
Q psy890 80 --ESDSYSAYTIAF 91 (131)
Q Consensus 80 --~~~~~D~i~~~~ 91 (131)
--..+|+|+...
T Consensus 63 ~~li~~~d~VIn~~ 76 (389)
T COG1748 63 VALIKDFDLVINAA 76 (389)
T ss_pred HHHHhcCCEEEEeC
Confidence 013358888743
|
|
| >KOG2078|consensus | Back alignment and domain information |
|---|
Probab=84.74 E-value=1 Score=33.38 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=45.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 75 (131)
.|-|+-||-|-++..++.+ +.+|++-|.++++++..+.+++.+...+ .++..+..|..
T Consensus 252 vv~D~FaGvGPfa~Pa~kK-------------~crV~aNDLNpesik~Lk~ni~lNkv~~---~~iei~Nmda~ 309 (495)
T KOG2078|consen 252 VVCDVFAGVGPFALPAAKK-------------GCRVYANDLNPESIKWLKANIKLNKVDP---SAIEIFNMDAK 309 (495)
T ss_pred hhhhhhcCcCccccchhhc-------------CcEEEecCCCHHHHHHHHHhccccccch---hheeeecccHH
Confidence 4568889999888877775 5799999999999999999988776665 13677666644
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.37 E-value=5.3 Score=28.19 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=54.0
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC---CCCeeEEEEccccccccCHHHHHHHHHHhc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVL 110 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L 110 (131)
..++.++|+++..+....+..+..++. ++..+..|+.+ |++ ...||+++.--. ..++....++.+=...|
T Consensus 175 pk~iaVvDIDERli~fi~k~aee~g~~-----~ie~~~~Dlr~-plpe~~~~kFDvfiTDPp-eTi~alk~FlgRGI~tL 247 (354)
T COG1568 175 PKRIAVVDIDERLIKFIEKVAEELGYN-----NIEAFVFDLRN-PLPEDLKRKFDVFITDPP-ETIKALKLFLGRGIATL 247 (354)
T ss_pred CceEEEEechHHHHHHHHHHHHHhCcc-----chhheeehhcc-cChHHHHhhCCeeecCch-hhHHHHHHHHhccHHHh
Confidence 368999999999999998888887765 68888888776 343 257999876321 11223444555555666
Q ss_pred cCC---cEEEEEe
Q psy890 111 KPG---GRFLCLE 120 (131)
Q Consensus 111 ~p~---G~l~~~~ 120 (131)
|.- |++.+.-
T Consensus 248 kg~~~aGyfgiT~ 260 (354)
T COG1568 248 KGEGCAGYFGITR 260 (354)
T ss_pred cCCCccceEeeee
Confidence 655 6666643
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.33 E-value=19 Score=28.51 Aligned_cols=101 Identities=15% Similarity=0.099 Sum_probs=59.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.. .+.+++.+|.++.......+.+.... ++.++..|+.+..
T Consensus 425 vLVTG-asggIG~~la~~L~~---------~Ga~Vvl~~r~~~~~~~~~~~l~~~~-------~v~~v~~Dvtd~~~v~~ 487 (681)
T PRK08324 425 ALVTG-AAGGIGKATAKRLAA---------EGACVVLADLDEEAAEAAAAELGGPD-------RALGVACDVTDEAAVQA 487 (681)
T ss_pred EEEec-CCCHHHHHHHHHHHH---------CcCEEEEEeCCHHHHHHHHHHHhccC-------cEEEEEecCCCHHHHHH
Confidence 44444 355666666665531 25689999999877666555443321 6777777765532
Q ss_pred -C-----CCCCeeEEEEccccccccC-------------------HHHHHHHHHHhccC---CcEEEEEe
Q psy890 79 -I-----ESDSYSAYTIAFGIRNVTR-------------------IDKALSEAYRVLKP---GGRFLCLE 120 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p---~G~l~~~~ 120 (131)
+ ..+.+|+|+.+.+...... ....++.+.+.+++ +|.++++.
T Consensus 488 ~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 488 AFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 1 1236899988766432110 23345566666665 57777654
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.85 E-value=11 Score=26.09 Aligned_cols=87 Identities=11% Similarity=-0.046 Sum_probs=46.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+|.-+|+ |.....++..+.. .+.+++++|.+++..+.+.+. + .+.....+...
T Consensus 1 m~I~IIG~--G~mG~sla~~L~~---------~g~~V~~~d~~~~~~~~a~~~----g-------~~~~~~~~~~~---- 54 (279)
T PRK07417 1 MKIGIVGL--GLIGGSLGLDLRS---------LGHTVYGVSRRESTCERAIER----G-------LVDEASTDLSL---- 54 (279)
T ss_pred CeEEEEee--cHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHC----C-------CcccccCCHhH----
Confidence 45666665 4455555554421 145899999998777766532 1 11111111110
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
-...|+|+..-... .....+.++...++++.++
T Consensus 55 ~~~aDlVilavp~~---~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 55 LKDCDLVILALPIG---LLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred hcCCCEEEEcCCHH---HHHHHHHHHHHhCCCCcEE
Confidence 13468887754322 2234566777777766444
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.75 E-value=12 Score=25.73 Aligned_cols=93 Identities=18% Similarity=0.203 Sum_probs=54.9
Q ss_pred chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C----CC
Q psy890 11 GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I----ES 81 (131)
Q Consensus 11 G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~----~~ 81 (131)
|.+...+++.+. .+.+++.++.+++.++...+.+...+ .++.++..|+.+.. + ..
T Consensus 11 ~gIG~~la~~l~----------~G~~Vv~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~i~~~~~~~~~~ 74 (275)
T PRK06940 11 GGIGQAIARRVG----------AGKKVLLADYNEENLEAAAKTLREAG------FDVSTQEVDVSSRESVKALAATAQTL 74 (275)
T ss_pred ChHHHHHHHHHh----------CCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEEeecCCHHHHHHHHHHHHhc
Confidence 467777877764 25789999988776665555444322 15677777876532 1 12
Q ss_pred CCeeEEEEccccccc-cCH-----------HHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNV-TRI-----------DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~-~~~-----------~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+|+++.+.+.... .++ -..++.+.+.++++|.++++
T Consensus 75 g~id~li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 75 GPVTGLVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred CCCCEEEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 468999887765322 111 22345555666666655443
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.78 E-value=12 Score=25.17 Aligned_cols=73 Identities=14% Similarity=-0.034 Sum_probs=45.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.. .+.++..++.+++.++...+... . .++.++..|+.+..
T Consensus 4 vlItG-asg~iG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~-~-------~~~~~~~~D~~~~~~v~~ 65 (260)
T PRK08267 4 IFITG-AASGIGRATALLFAA---------EGWRVGAYDINEAGLAALAAELG-A-------GNAWTGALDVTDRAAWDA 65 (260)
T ss_pred EEEeC-CCchHHHHHHHHHHH---------CCCeEEEEeCCHHHHHHHHHHhc-C-------CceEEEEecCCCHHHHHH
Confidence 44444 456667777666531 25689999988876666544433 1 16788888876532
Q ss_pred -CC------CCCeeEEEEcccc
Q psy890 79 -IE------SDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~------~~~~D~i~~~~~l 93 (131)
+. .+++|+++.+.+.
T Consensus 66 ~~~~~~~~~~~~id~vi~~ag~ 87 (260)
T PRK08267 66 ALADFAAATGGRLDVLFNNAGI 87 (260)
T ss_pred HHHHHHHHcCCCCCEEEECCCC
Confidence 11 3468999887654
|
|
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=82.72 E-value=8.8 Score=27.03 Aligned_cols=91 Identities=9% Similarity=0.006 Sum_probs=49.5
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEeccccc-C
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEE-L 77 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~-~ 77 (131)
||=.|+ |.|..+..+++.. +. ++++++.+++-.+.+++.+.. . .+ .....++.+ +
T Consensus 158 VlI~ga~g~vG~~aiqlAk~~------------G~~~Vi~~~~s~~~~~~~~~~lGa---~-----~vi~~~~~~~~~~i 217 (345)
T cd08293 158 MVVSGAAGACGSLAGQIGRLL------------GCSRVVGICGSDEKCQLLKSELGF---D-----AAINYKTDNVAERL 217 (345)
T ss_pred EEEECCCcHHHHHHHHHHHHc------------CCCEEEEEcCCHHHHHHHHHhcCC---c-----EEEECCCCCHHHHH
Confidence 444443 4556666666664 44 799998888766665543321 1 11 111111111 0
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+...+ . ..+.+..+.|+++|+++.+-
T Consensus 218 ~~~~~~gvd~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 218 RELCPEGVDVYFDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred HHHCCCCceEEEECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 112246899976432 1 12467788899999988653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=82.32 E-value=11 Score=25.14 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C-----CC-CCeeEEEEccccccc----c
Q psy890 33 CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I-----ES-DSYSAYTIAFGIRNV----T 97 (131)
Q Consensus 33 ~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~-~~~D~i~~~~~l~~~----~ 97 (131)
.+.+|+.++.+.+.+....+.+.... ...++..|+.+.. + .. +.+|+++.+...... .
T Consensus 19 ~Ga~V~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~~~~~~~ 91 (241)
T PF13561_consen 19 EGANVILTDRNEEKLADALEELAKEY-------GAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNNAGISPPSNVEK 91 (241)
T ss_dssp TTEEEEEEESSHHHHHHHHHHHHHHT-------TSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEEEESCTGGGTSS
T ss_pred CCCEEEEEeCChHHHHHHHHHHHHHc-------CCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEecccccccccCCC
Confidence 37899999999988655555554432 2335788876432 0 12 779988875443222 1
Q ss_pred --------C-----------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 98 --------R-----------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 98 --------~-----------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+ .....+.+.+.|+++|.++++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~ 135 (241)
T PF13561_consen 92 PLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSI 135 (241)
T ss_dssp SGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEG
T ss_pred ChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccch
Confidence 0 234456666788888888776544
|
... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.81 E-value=14 Score=26.38 Aligned_cols=92 Identities=13% Similarity=0.092 Sum_probs=50.8
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cccc-C-
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEE-L- 77 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~- 77 (131)
||=.|+ +.|..+..+++.. +.++++++.+++-.+.+++.+ +... -+..... +..+ .
T Consensus 162 VlV~GaaG~vG~~aiqlAk~~------------G~~Vi~~~~~~~k~~~~~~~l---Ga~~----vi~~~~~~~~~~~i~ 222 (348)
T PLN03154 162 VFVSAASGAVGQLVGQLAKLH------------GCYVVGSAGSSQKVDLLKNKL---GFDE----AFNYKEEPDLDAALK 222 (348)
T ss_pred EEEecCccHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHHhc---CCCE----EEECCCcccHHHHHH
Confidence 444554 3556666666664 467889988887666554322 2110 1111101 1111 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+-.-+ ...+....+.|+++|+++++-
T Consensus 223 ~~~~~gvD~v~d~vG-------~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 223 RYFPEGIDIYFDNVG-------GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred HHCCCCcEEEEECCC-------HHHHHHHHHHhccCCEEEEEC
Confidence 111246899876433 135677888999999988753
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.74 E-value=14 Score=26.06 Aligned_cols=36 Identities=11% Similarity=0.052 Sum_probs=23.7
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+|+..---. +....+..+...+++++.++...
T Consensus 71 ~~~D~vilavK~~---~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 71 PPCDWVLVGLKTT---ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred CCCCEEEEEecCC---ChHhHHHHHhhhcCCCCEEEEec
Confidence 4689987742211 34556777788888888876643
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=81.57 E-value=7.4 Score=28.73 Aligned_cols=64 Identities=13% Similarity=0.128 Sum_probs=42.0
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~ 83 (131)
||.|..+..+++.+.. .+..++.+|.+++.++..++... .+.++.+|..+.. ..-..
T Consensus 237 iG~G~~g~~l~~~L~~---------~~~~v~vid~~~~~~~~~~~~~~----------~~~~i~gd~~~~~~L~~~~~~~ 297 (453)
T PRK09496 237 VGGGNIGYYLAKLLEK---------EGYSVKLIERDPERAEELAEELP----------NTLVLHGDGTDQELLEEEGIDE 297 (453)
T ss_pred ECCCHHHHHHHHHHHh---------CCCeEEEEECCHHHHHHHHHHCC----------CCeEEECCCCCHHHHHhcCCcc
Confidence 5668898888888752 25689999999988877665431 4556666655431 12245
Q ss_pred eeEEEEc
Q psy890 84 YSAYTIA 90 (131)
Q Consensus 84 ~D~i~~~ 90 (131)
+|.|++.
T Consensus 298 a~~vi~~ 304 (453)
T PRK09496 298 ADAFIAL 304 (453)
T ss_pred CCEEEEC
Confidence 7777653
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=81.55 E-value=15 Score=25.38 Aligned_cols=101 Identities=18% Similarity=0.168 Sum_probs=56.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~--- 78 (131)
|+.+|||-=.-...+- .+ ...+++=+|. ++.++.-++.++..+... ..+..++..|+.. +.
T Consensus 85 vV~LGaGlDTr~~Rl~--~~----------~~~~~~EvD~-P~v~~~K~~~l~~~~~~~--~~~~~~v~~Dl~~~w~~~L 149 (260)
T TIGR00027 85 VVILGAGLDTRAYRLP--WP----------DGTRVFEVDQ-PAVLAFKEKVLAELGAEP--PAHRRAVPVDLRQDWPAAL 149 (260)
T ss_pred EEEeCCccccHHHhcC--CC----------CCCeEEECCC-hHHHHHHHHHHHHcCCCC--CCceEEeccCchhhHHHHH
Confidence 6788887633333221 11 1345555554 334444444555422111 1377888888762 11
Q ss_pred ----CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEE
Q psy890 79 ----IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+..+.--++++-.++.+++ ....++..+.+...||+.+++
T Consensus 150 ~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~ 195 (260)
T TIGR00027 150 AAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAF 195 (260)
T ss_pred HhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEE
Confidence 2223345666666677776 456788888888778888866
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=80.65 E-value=7.3 Score=27.78 Aligned_cols=68 Identities=19% Similarity=0.243 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEE
Q psy890 42 INRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 42 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~ 117 (131)
..+..++.++.+.. ++.++.+|+.+.- -+.+..|.++..-+-.|++ ..+..+.++.+-+.+|..++
T Consensus 294 l~~~~YEsir~n~~----------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414)
T COG5379 294 LDEGVYESIRQNLR----------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414)
T ss_pred hchhhHHHHHhhhh----------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence 45566666666553 6888888877753 3557899999988888887 46789999999999999998
Q ss_pred EE
Q psy890 118 CL 119 (131)
Q Consensus 118 ~~ 119 (131)
+-
T Consensus 364 fR 365 (414)
T COG5379 364 FR 365 (414)
T ss_pred Ee
Confidence 84
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=80.49 E-value=8.5 Score=27.46 Aligned_cols=72 Identities=13% Similarity=0.129 Sum_probs=38.9
Q ss_pred eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
+++++|.++.-.+.+++. +... -+.....+..+ . . .....+|+|+-.-+ . ...+....+.+++
T Consensus 203 ~Vi~~~~~~~~~~~~~~~----Ga~~----~i~~~~~~~~~~i~~~~~~~g~d~vid~~g-----~-~~~~~~~~~~~~~ 268 (358)
T TIGR03451 203 KIIAVDIDDRKLEWAREF----GATH----TVNSSGTDPVEAIRALTGGFGADVVIDAVG-----R-PETYKQAFYARDL 268 (358)
T ss_pred eEEEEcCCHHHHHHHHHc----CCce----EEcCCCcCHHHHHHHHhCCCCCCEEEECCC-----C-HHHHHHHHHHhcc
Confidence 599999888777766432 2110 01111111100 0 0 12235898876432 1 2346677788999
Q ss_pred CcEEEEEec
Q psy890 113 GGRFLCLEF 121 (131)
Q Consensus 113 ~G~l~~~~~ 121 (131)
+|+++++-.
T Consensus 269 ~G~iv~~G~ 277 (358)
T TIGR03451 269 AGTVVLVGV 277 (358)
T ss_pred CCEEEEECC
Confidence 999987643
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.38 E-value=4.8 Score=27.84 Aligned_cols=43 Identities=16% Similarity=0.140 Sum_probs=35.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||.-+|+|......... +..+.++|+++..++.+.+++...
T Consensus 225 iVlDpf~GsGtt~~aa~~~-------------~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 225 IVLDPFAGSGTTGIAAKNL-------------GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred EEeecCCCCChHHHHHHHc-------------CCceEEEecCHHHHHHHHHHHHhh
Confidence 6899999999877655443 678999999999999999998754
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=80.26 E-value=17 Score=25.78 Aligned_cols=37 Identities=16% Similarity=0.228 Sum_probs=27.9
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+|+|+..- -..+.+..++.+.+.++++..+++..=
T Consensus 66 ~~~Dlviv~v---Ka~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 66 GPADLVIVTV---KAYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred CCCCEEEEEe---ccccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 4689998742 223678889999999999998877653
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.25 E-value=15 Score=24.78 Aligned_cols=72 Identities=10% Similarity=-0.028 Sum_probs=42.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|-.| |+|.+...+++.+.+ .+.+|+.++.+++-.+...+.. + .++.++..|+.+..
T Consensus 9 vlItG-as~gIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~---~------~~~~~~~~Dl~~~~~~~~ 69 (261)
T PRK08265 9 AIVTG-GATLIGAAVARALVA---------AGARVAIVDIDADNGAAVAASL---G------ERARFIATDITDDAAIER 69 (261)
T ss_pred EEEEC-CCChHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHh---C------CeeEEEEecCCCHHHHHH
Confidence 34344 556677777666531 2568999998876544443332 1 15777888876542
Q ss_pred -CC-----CCCeeEEEEcccc
Q psy890 79 -IE-----SDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l 93 (131)
+. .+..|+++.+.+.
T Consensus 70 ~~~~~~~~~g~id~lv~~ag~ 90 (261)
T PRK08265 70 AVATVVARFGRVDILVNLACT 90 (261)
T ss_pred HHHHHHHHhCCCCEEEECCCC
Confidence 11 1467988876553
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=80.20 E-value=24 Score=26.86 Aligned_cols=108 Identities=7% Similarity=-0.012 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEELPI- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~- 79 (131)
.+.|..||+|.......+... . + .....+++.+....+...++.+....+... +.......| +....+
T Consensus 220 ~~~Dp~~Gsg~~L~~~~~~~~--~--~---qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~---~t~~~~~~dtl~~~d~~ 289 (501)
T TIGR00497 220 DVYDMACGSGSLLLQVIKVLG--E--K---TSLVSYYGQEINHTTYNLCRMNMILHNIDY---ANFNIINADTLTTKEWE 289 (501)
T ss_pred cccccccchHHHHHHHHHHhc--c--c---ccceeEEEEeCchHHHHHHHHHHHHcCCCc---cccCcccCCcCCCcccc
Confidence 467888999987655443321 0 0 024679999999999999988754433211 011111222 111111
Q ss_pred CCCCeeEEEEcccc---------------------cccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGI---------------------RNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l---------------------~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...+||.|+++-.. |.++ .-..++..+...|++||+..++
T Consensus 290 ~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 290 NENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred ccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 22346666653211 1111 1246788899999999985544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 131 | ||||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 9e-05 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 6e-04 |
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 3e-42
Identities = 26/125 (20%), Positives = 40/125 (32%), Gaps = 16/125 (12%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G I+ + VT DIN + + E AR + F
Sbjct: 41 SGKISLELASKG-------------YSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEF 87
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFSHVNN 126
NA L S+ + + +V + + E +RVLKPG +EF +
Sbjct: 88 KVENASSLSFHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWH 147
Query: 127 SMLQW 131
L
Sbjct: 148 LKLYR 152
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-37
Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 18/122 (14%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G +A F +V V D+ +L V + ++ +
Sbjct: 48 GGHVANAFAPFVK-------------KVVAFDLTEDILKVARAFIEGN-----GHQQVEY 89
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
++ +AE++P + + T + +SEAYRVLK GG+ L ++ S N
Sbjct: 90 VQGDAEQMPFTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAF 149
Query: 130 QW 131
Sbjct: 150 DV 151
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 4e-32
Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 18/122 (14%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G A F YV D + M++V A++ V N +RF
Sbjct: 32 AGHTALAFSPYV-------------QECIGVDATKEMVEVASSFAQEK---GVEN--VRF 73
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ AE LP DS+ T + + + + KA+ E RVLK GRFL ++ + +L
Sbjct: 74 QQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVL 133
Query: 130 QW 131
Sbjct: 134 DE 135
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 107 bits (268), Expect = 3e-30
Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 15/120 (12%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G V + V D+ M++ ++ L + N +
Sbjct: 48 AGFYLPYLSKMVGE----------KGKVYAIDVQEEMVNYAWEKVNKL---GLKN--VEV 92
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
L++ ++P+ ++ +AF ++ K L E RV KP +++
Sbjct: 93 LKSEENKIPLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKG 152
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 96.8 bits (241), Expect = 3e-26
Identities = 19/114 (16%), Positives = 40/114 (35%), Gaps = 16/114 (14%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
PG ++ L++ + D ++ M ++ + D N R++
Sbjct: 54 PGALSIA------------LAKQSDFSIRALDFSKHMNEIALKNIADA----NLNDRIQI 97
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
++ + +PIE + + + A E YR+LK GG+
Sbjct: 98 VQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFG 151
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 4e-26
Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ + AML VG +RA P ++ A E LP +S+ + +
Sbjct: 58 QKVGVEPSEAMLAVGRRRA----------PEATWVRAWGEALPFPGESFDVVLLFTTLEF 107
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
V +++ L EA RVL+PGG +
Sbjct: 108 VEDVERVLLEARRVLRPGGALVVGVLEA 135
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 1e-23
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 12/88 (13%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA-YTIAFGIR 94
V + D ++ ML+V ++ +EA AE+LP S ++ A + +
Sbjct: 78 EVVLVDPSKEMLEVAREKGVK-----------NVVEAKAEDLPFPSGAFEAVLALGDVLS 126
Query: 95 NVTRIDKALSEAYRVLKPGGRFLCLEFS 122
V DKA SE RVL P G + +
Sbjct: 127 YVENKDKAFSEIRRVLVPDGLLIATVDN 154
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 88.4 bits (219), Expect = 1e-22
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+T DI+ L+ + ++FL+AN LP E S+ + F + +
Sbjct: 63 EITSIDISPESLEKARENTEKN-----GIKNVKFLQANIFSLPFEDSSFDHIFVCFVLEH 117
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ ++AL +VLKPGG +E H
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDH 145
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 6e-22
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 10/98 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
T+ D++ ML++ + R R N +++++EA+ + E + Y A I +
Sbjct: 70 TFTLVDMSEKMLEIAKNRFRG-------NLKVKYIEADYSKYDFE-EKYDMVVSALSIHH 121
Query: 96 VTRIDKA--LSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ DK +Y +LK G F+ + H + ++
Sbjct: 122 LEDEDKKELYKRSYSILKESGIFINADLVHGETAFIEN 159
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 3e-20
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
D + AML+V Q+ + + +++ ++A+A +P+ +S +
Sbjct: 63 RYIALDADAAMLEVFRQKIAGV------DRKVQVVQADARAIPLPDESVHGVIVVHLWHL 116
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
V K L+EA RVLKPGG L
Sbjct: 117 VPDWPKVLAEAIRVLKPGGALLEGWDQA 144
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 81.1 bits (200), Expect = 5e-20
Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 9/103 (8%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
LS DI+ M+ G++R P L F++ + LP E++ + A
Sbjct: 71 LSRTGY-KAVGVDISEVMIQKGKERGEG--------PDLSFIKGDLSSLPFENEQFEAIM 121
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ +AL+E RVLK G
Sbjct: 122 AINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPTAKPRENS 164
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 3e-19
Identities = 20/87 (22%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 37 VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNV 96
+ + M ++ +R + L+ AE LP++ +S+ + I V
Sbjct: 68 KIGVEPSERMAEIARKRG------------VFVLKGTAENLPLKDESFDFALMVTTICFV 115
Query: 97 TRIDKALSEAYRVLKPGGRFLCLEFSH 123
++AL EAYR+LK GG +
Sbjct: 116 DDPERALKEAYRILKKGGYLIVGIVDR 142
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 5e-19
Identities = 18/119 (15%), Positives = 36/119 (30%), Gaps = 26/119 (21%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G L + K + DIN L +++
Sbjct: 28 NGFYCKYLLEFATK-------------LYCIDINVIALKEVKEK-------------FDS 61
Query: 70 LEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSM 128
+ ++ I +S A ++ +SE R+LK GR + +++ N +
Sbjct: 62 VITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKENTGI 120
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 1e-16
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V DI+ M+ + A+ + F+ +A +L E ++ I +
Sbjct: 62 EVVGVDISEDMIRKAREYAKSR------ESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115
Query: 96 VTRID--KALSEAYRVLKPGGRFLCLEFSH 123
++ + E RVLKP G+F+
Sbjct: 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTDL 145
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 72.0 bits (176), Expect = 2e-16
Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 5/101 (4%)
Query: 36 HVTVADIN----RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIESDSYSAYTIA 90
HVT DI A L +G+ L + F +++L PI + +A
Sbjct: 70 HVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLA 129
Query: 91 FGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ + + E+S ++ Q
Sbjct: 130 HSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALDQI 170
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 1e-15
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 9/100 (9%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L T D +L + R L FLE +A E+ + D Y
Sbjct: 40 LMPLLPEGSKYTGIDSGETLLAEARELFRLL------PYDSEFLEGDATEIELN-DKYDI 92
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126
+ ++T + L + +K GG+ +C E ++N
Sbjct: 93 AICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISN 132
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 69.2 bits (169), Expect = 2e-15
Identities = 13/88 (14%), Positives = 27/88 (30%), Gaps = 11/88 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V + + M P++ + AE L + S I +
Sbjct: 58 FVYAVEPSIVMRQQAVVH-----------PQVEWFTGYAENLALPDKSVDGVISILAIHH 106
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ ++K+ E R+++ G L
Sbjct: 107 FSHLEKSFQEMQRIIRDGTIVLLTFDIR 134
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 9e-14
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 9/95 (9%)
Query: 36 HVTVADINRAMLDVGEQRAR---DLFKVPVPNPRLRFLEANAEEL------PIESDSYSA 86
V D+ L+V + + F +RFL+ E L + S
Sbjct: 110 KVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDI 169
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121
T E +RVL+ GG +
Sbjct: 170 VISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDV 204
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 2e-13
Identities = 22/94 (23%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ H VT D +D+ + AR + + N R+ + + ++LP ++
Sbjct: 64 LAGHVTGQVTGLDFLSGFIDIFNRNAR---QSGLQN-RVTGIVGSMDDLPFRNEELDLIW 119
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122
I N+ ++ L+E + LK GG E S
Sbjct: 120 SEGAIYNIGF-ERGLNEWRKYLKKGGYLAVSECS 152
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 63.0 bits (153), Expect = 2e-13
Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 16 RFLNYVDKLPPN---------------TLSEHCAPHVTVADINRAMLDVGEQRARDLFKV 60
RFL Y ++ + ++ +I+ L E +R+
Sbjct: 13 RFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN--- 69
Query: 61 PVPNPRLRFLEANAEELPIESDS----YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116
N +L + + +LP + +S YS TI +N + +A+ E RVLKPGG
Sbjct: 70 ---NFKLNISKGDIRKLPFKDESMSFVYSYGTIFHMRKN--DVKEAIDEIKRVLKPGGLA 124
Query: 117 LCLEFSH 123
+
Sbjct: 125 CINFLTT 131
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 62.9 bits (153), Expect = 3e-13
Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
EH A +V D++ ML D + + A+ ++L + DS+
Sbjct: 61 AHEHGASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHLPQDSFDLAY 112
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + V + + ++ L PGG F+
Sbjct: 113 SSLALHYVEDVARLFRTVHQALSPGGHFVF 142
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 4e-13
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 13/103 (12%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L V + +R M + +++ E + + S
Sbjct: 63 LLLAGR-TVYGIEPSREMRMIAKEKLPK---------EFSITEGDFLSFEVP-TSIDTIV 111
Query: 89 IAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ ++T +K A+++ ++L GG+ + + +
Sbjct: 112 STYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 6e-13
Identities = 19/90 (21%), Positives = 37/90 (41%), Gaps = 8/90 (8%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
+EH A V D++ ML +++ P + + + E++ IE D+Y+
Sbjct: 62 AAEHGAKKVLGIDLSERMLTEAKRKTTS--------PVVCYEQKAIEDIAIEPDAYNVVL 113
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + + D + Y LK G F+
Sbjct: 114 SSLALHYIASFDDICKKVYINLKSSGSFIF 143
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-12
Identities = 17/95 (17%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+++ +T D+ +++ + A K + R++ + + + LP +++
Sbjct: 64 LADYVKGQITGIDLFPDFIEIFNENAV---KANCAD-RVKGITGSMDNLPFQNEELDLIW 119
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
I N+ ++ ++E + LK GG E S
Sbjct: 120 SEGAIYNIGF-ERGMNEWSKYLKKGGFIAVSEASW 153
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 57.4 bits (138), Expect = 3e-11
Identities = 17/103 (16%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L V + DI L + + + ++ E DSY
Sbjct: 97 LLLPLFREVDMVDITEDFLVQAKTYLGEE-----GKRVRNYFCCGLQDFTPEPDSYDVIW 151
Query: 89 IAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVNNSML 129
I + I ++T + L L+P G + + +L
Sbjct: 152 IQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVIL 194
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 4e-11
Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY----SAYTIAF 91
V D++ ++D +Q P R++ + I + SA
Sbjct: 70 DVLGTDLDPILIDYAKQDF----------PEARWVVGDLSVDQISETDFDLIVSAGN-VM 118
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
G + AL+ +R L GR + + F
Sbjct: 119 GFLAEDGREPALANIHRALGADGRAV-IGFGA 149
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 57.0 bits (137), Expect = 6e-11
Identities = 16/95 (16%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L + + + ML+ ++ + P +F+ A+ E + ++Y
Sbjct: 111 LLTKLYATTDLLEPVKHMLEEAKRELAGM-------PVGKFILASMETATLPPNTYDLIV 163
Query: 89 IAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF 121
I + +T D K + L P G E
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKEN 198
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 1e-10
Identities = 15/120 (12%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF 69
G+I + L+ V P + V + + + ++ + N + +
Sbjct: 63 AGEIDLQILSKVQAQYPGVCI-----NNEVVEPSAEQIAKYKELVAKTSNLE--NVKFAW 115
Query: 70 LEANAEEL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + E E + + + V I L + +L + L + S
Sbjct: 116 HKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 2e-10
Identities = 18/87 (20%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + L +Q A++ ++ +++N + I +D++ F
Sbjct: 53 EVTAVDQSSVGLAKAKQLAQE------KGVKITTVQSNLADFDIVADAWEGIVSIFCHLP 106
Query: 96 VTRIDKALSEAYRVLKPGGRFLCLEFS 122
+ + + Y+ LKPGG F+ F+
Sbjct: 107 SSLRQQLYPKVYQGLKPGGVFILEGFA 133
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 2e-10
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ VT I+R ++ RA + N R+ F A+A +LP E S+ A
Sbjct: 79 LATARDVRVTGISISRPQVNQANARAT---AAGLAN-RVTFSYADAMDLPFEDASFDAVW 134
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ ++ +AL E RVL+PGG +F
Sbjct: 135 ALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-10
Identities = 19/86 (22%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
VT D++ ML++ +++A + N + F + EL + + A TI
Sbjct: 56 EVTGVDLSEEMLEIAQEKAMET------NRHVDFWVQDMRELELP-EPVDAITILCDSLN 108
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFL 117
++ + + A R+L GG+ L
Sbjct: 109 YLQTEADVKQTFDSAARLLTDGGKLL 134
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 5e-10
Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 12/85 (14%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ + ++++ Q P + F +L ++ + + +
Sbjct: 65 QIEGLEPATRLVELARQTH----------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIH 114
Query: 96 VTRID--KALSEAYRVLKPGGRFLC 118
+ + AL ++ GG L
Sbjct: 115 MGPGELPDALVALRMAVEDGGGLLM 139
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 5e-10
Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY-SAY 87
++E H DI ++++ +R N ++ F + +++ Y
Sbjct: 73 INEKYGAHTHGIDICSNIVNMANERVSG-------NNKIIFEANDILTKEFPENNFDLIY 125
Query: 88 TI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125
+ A ++ +K + Y+ LKP G L ++
Sbjct: 126 SRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 6e-10
Identities = 20/101 (19%), Positives = 36/101 (35%), Gaps = 12/101 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
+++ A V D M++ Q P L F A+A ++ A
Sbjct: 75 IAQSGA-EVLGTDNAATMIEKARQNY----------PHLHFDVADARNFRVD-KPLDAVF 122
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
+ V + A++ ++ LK GGRF+ N +
Sbjct: 123 SNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYI 163
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-09
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 10/85 (11%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTI---AFG 92
V D++ ML V ++A++ N ++ FL+ + E+ + + + A T+
Sbjct: 65 EVVGLDLHEEMLRVARRKAKER------NLKIEFLQGDVLEIAFK-NEFDAVTMFFSTIM 117
Query: 93 IRNVTRIDKALSEAYRVLKPGGRFL 117
+ + K S+ LKPGG F+
Sbjct: 118 YFDEEDLRKLFSKVAEALKPGGVFI 142
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 2e-09
Identities = 12/104 (11%), Positives = 33/104 (31%), Gaps = 12/104 (11%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL------PIE 80
+++ P + +D++ M+ E P + F +++++ ++
Sbjct: 54 MAQELKPFEQIIGSDLSATMIKTAEVIKEG---SPDTYKNVSFKISSSDDFKFLGADSVD 110
Query: 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124
T + +K AY L+ G ++
Sbjct: 111 KQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYADP 153
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 4e-09
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
+ D + LD + A ++ +A +L + Y T
Sbjct: 145 QLVGIDYDPEALDGATRLAAGHA----LAGQITLHRQDAWKLDTR-EGYDLLTSNGLNIY 199
Query: 96 VT---RIDKALSEAYRVLKPGGRFLCLEFS 122
R+ + ++ LKPGG + +
Sbjct: 200 EPDDARVTELYRRFWQALKPGGALVTSFLT 229
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 9e-09
Identities = 11/90 (12%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + M+ + + F + + + + + A A + +
Sbjct: 70 RVTALDGSAEMIAEAGRHGL---------DNVEFRQQDLFDWTPD-RQWDAVFFAHWLAH 119
Query: 96 VTR--IDKALSEAYRVLKPGGRFLCLEFSH 123
V + + PGG ++ +
Sbjct: 120 VPDDRFEAFWESVRSAVAPGGVVEFVDVTD 149
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 50.4 bits (120), Expect = 1e-08
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 22/110 (20%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY---- 84
L P+VT D + ++ + P+LR+ + +L S S+
Sbjct: 60 LFLGGFPNVTSVDYSSVVVAAMQACYAH-------VPQLRWETMDVRKLDFPSASFDVVL 112
Query: 85 -----------SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
V +D+ LSE RVL PGGRF+ + +
Sbjct: 113 EKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA 162
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 1e-08
Identities = 16/98 (16%), Positives = 32/98 (32%), Gaps = 16/98 (16%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V DI + ++ DL + R+ ++ + + D + F +
Sbjct: 49 RVFGFDIQDKAIANTTKKLTDLNLID----RVTLIKDGHQNMDKYIDCPVK-AVMFNLGY 103
Query: 96 VTRIDK-----------ALSEAYRVLKPGGRFLCLEFS 122
+ D ALS+A +L GG + +
Sbjct: 104 LPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 50.7 bits (121), Expect = 1e-08
Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG-IR 94
VT +++ ++L +R + R ++ + ++ + I+ G I
Sbjct: 106 EVTALELSTSVLAAFRKRLAE--APADVRDRCTLVQGDMSAFALD-KRFGTVVISSGSIN 162
Query: 95 NVTRID--KALSEAYRVLKPGGRFL 117
+ D + L+PGG+FL
Sbjct: 163 ELDEADRRGLYASVREHLEPGGKFL 187
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-08
Identities = 14/94 (14%), Positives = 23/94 (24%), Gaps = 19/94 (20%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPIESDS-YSA 86
A D + +L + A P E N ELP + +
Sbjct: 66 FGPQAA-RWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPAGLGAPFGL 114
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
G + + + P FL +
Sbjct: 115 IVSRRGPTS------VILRLPELAAPDAHFLYVG 142
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 2e-08
Identities = 16/96 (16%), Positives = 31/96 (32%), Gaps = 6/96 (6%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY-SAY 87
L + +I E+ + + + + + E+P E +SY +
Sbjct: 100 LVRKFGVSIDCLNIAPVQNKRNEEYNN---QAGLAD-NITVKYGSFLEIPCEDNSYDFIW 155
Query: 88 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + + K E RVLKP G +
Sbjct: 156 SQDAFL-HSPDKLKVFQECARVLKPRGVMAITDPMK 190
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 49.6 bits (118), Expect = 2e-08
Identities = 21/103 (20%), Positives = 34/103 (33%), Gaps = 8/103 (7%)
Query: 26 PNTLSEHCAPHVTVADINRAMLDVG-------EQRARDLFKVPVPNPRLRFLEANAEELP 78
P + A + + + D G + + + R + ++P
Sbjct: 51 PLQPVDRIARDLRQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQVP 110
Query: 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121
+E +S + T I L EA RVLKPGG E
Sbjct: 111 LEDESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEV 152
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-08
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 11/87 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
+ D+++ ML E + R + R + L I + T
Sbjct: 61 NTWAVDLSQEMLSEAENKFRS------QGLKPRLACQDISNLNIN-RKFDLITCCLDSTN 113
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFLC 118
I + + K LK GG F+
Sbjct: 114 YIIDSDDLKKYFKAVSNHLKEGGVFIF 140
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-07
Identities = 14/86 (16%), Positives = 27/86 (31%), Gaps = 15/86 (17%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
V +++ ML + +R P + + + +SA T F
Sbjct: 74 TVEGLELSADMLAIARRRN----------PDAVLHHGDMRDFSLG-RRFSAVTCMFSSIG 122
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFL 117
+ +D AL + P G +
Sbjct: 123 HLAGQAELDAALERFAAHVLPDGVVV 148
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 45.9 bits (109), Expect = 4e-07
Identities = 12/86 (13%), Positives = 28/86 (32%), Gaps = 15/86 (17%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--- 92
+++ ML +R P + + + + +SA F
Sbjct: 64 DTAGLELSEDMLTHARKRL----------PDATLHQGDMRDFRLG-RKFSAVVSMFSSVG 112
Query: 93 -IRNVTRIDKALSEAYRVLKPGGRFL 117
++ + A++ L+PGG +
Sbjct: 113 YLKTTEELGAAVASFAEHLEPGGVVV 138
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 1e-06
Identities = 19/90 (21%), Positives = 38/90 (42%), Gaps = 9/90 (10%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY-SAYTI-AFGI 93
V ++ A D G +RAR+L + + +R N + P + + +++ +
Sbjct: 142 RVEGVTLSAAQADFGNRRAREL---RIDD-HVRSRVCNMLDTPFDKGAVTASWNNESTMY 197
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + SE R LK GGR++ +
Sbjct: 198 VD---LHDLFSEHSRFLKVGGRYVTITGCW 224
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 2e-06
Identities = 14/99 (14%), Positives = 31/99 (31%), Gaps = 18/99 (18%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSY---- 84
L++ D +R ++D + + ++P+ Y
Sbjct: 70 LADRGI-EAVGVDGDRTLVDAARAAGAG------EVHLASYAQLAEAKVPVG-KDYDLIC 121
Query: 85 SAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
+ + + I + LS +L PGG + + H
Sbjct: 122 ANFALLH-----QDIIELLSAMRTLLVPGGALVI-QTLH 154
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 2e-06
Identities = 16/106 (15%), Positives = 41/106 (38%), Gaps = 15/106 (14%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L+ HC +TV D+ + QR + + + + + ++ +
Sbjct: 69 LAPHCK-RLTVIDVMPRAIGRACQRTKRW-------SHISWAATDILQFS-TAELFDLIV 119
Query: 89 IAFGI---RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+A + ++T++ A+ ++L PGG + F ++ +
Sbjct: 120 VAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLV---FGSARDATCRR 162
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 5e-06
Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 19/86 (22%)
Query: 34 APHVTVA--DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
P +T D+++ + + A P++ F A++ LP S A +
Sbjct: 107 LPEITTFGLDVSKVAI----KAAAKR------YPQVTFCVASSHRLPFSDTSMDAIIRIY 156
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRFL 117
E RV+KPGG +
Sbjct: 157 APCK-------AEELARVVKPGGWVI 175
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 41.9 bits (98), Expect = 1e-05
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 12/93 (12%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
VT D + ML + + + + EAN L + + + + N
Sbjct: 81 SVTSVDASDKMLKYALKERWNR-RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGN 139
Query: 96 V-----------TRIDKALSEAYRVLKPGGRFL 117
+ AL +++PGG +
Sbjct: 140 SFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 2e-05
Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 12/106 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA--EELPIESDSYSA 86
LS+ P V D++++ L++ + N R L+ + I S+ A
Sbjct: 74 LSQFF-PRVIGLDVSKSALEIAAKENTA------ANISYRLLDGLVPEQAAQIHSEIGDA 126
Query: 87 YTIAFGI---RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSML 129
V + + +L G +E
Sbjct: 127 NIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCIDFF 172
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 5e-05
Identities = 15/90 (16%), Positives = 23/90 (25%), Gaps = 8/90 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY--TIAFGI 93
V D N + E+ L + L + Y T+
Sbjct: 56 DVDAWDKNAMSIANVERIKSIENL-----DNLHTRVVDLNNLTFD-RQYDFILSTVVLMF 109
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
I ++ R KPGG L +
Sbjct: 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 39.0 bits (90), Expect = 1e-04
Identities = 8/90 (8%), Positives = 23/90 (25%), Gaps = 10/90 (11%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
LS V V +I + ++ + L + + + + +
Sbjct: 141 LSHVYGMRVNVVEIEPDIAELSRKVIEGL-----GVDGVNVITGDETVIDGLE-----FD 190
Query: 89 IAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
+ + +R + R +
Sbjct: 191 VLMVAALAEPKRRVFRNIHRYVDTETRIIY 220
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 39.0 bits (91), Expect = 1e-04
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 7/91 (7%)
Query: 28 TLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAY 87
T + T D++ ++RA +L V R+ F+ +A ++
Sbjct: 53 TWARDHGITGTGIDMSSLFTAQAKRRAEEL---GVSE-RVHFIHNDAAGYV-ANEKCDV- 106
Query: 88 TIAFG-IRNVTRIDKALSEAYRVLKPGGRFL 117
G A + LKPGG L
Sbjct: 107 AACVGATWIAGGFAGAEELLAQSLKPGGIML 137
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 38.7 bits (90), Expect = 2e-04
Identities = 19/85 (22%), Positives = 30/85 (35%), Gaps = 14/85 (16%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V D + + +R P + F + +A D+Y A + +
Sbjct: 67 DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAI------DAYDAVWAHACLLH 114
Query: 96 VTRID--KALSEAYRVLKPGGRFLC 118
V R + L +R LKPGG F
Sbjct: 115 VPRDELADVLKLIWRALKPGGLFYA 139
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 38.4 bits (89), Expect = 2e-04
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 2/91 (2%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYT 88
L + +T D++ L++ ++R L RL+ ++ Y A T
Sbjct: 48 LKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT 107
Query: 89 IAFGIRNVT--RIDKALSEAYRVLKPGGRFL 117
+ I ++ R+ + +P +
Sbjct: 108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIV 138
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 38.6 bits (89), Expect = 2e-04
Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDS----- 83
DI ++ RAR++ + ++ F ++ ++
Sbjct: 82 YERAGIGEYYGVDIAEVSINDARVRARNMKR----RFKVFFRAQDSYGRHMDLGKEFDVI 137
Query: 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
S ++ + +D A R L+PGG F+
Sbjct: 138 SSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIM 172
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 37.9 bits (87), Expect = 2e-04
Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 73 NAEELPIESDSYSAY----TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127
N ++L + S++ + + L+E R+L+PGG E
Sbjct: 50 NIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD 108
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 131 | |||
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.88 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.87 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.85 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.85 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.85 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.85 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.84 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.84 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.84 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.84 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.84 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.84 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.83 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.83 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.83 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.83 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.83 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.83 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.82 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.82 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.82 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.82 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.82 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.82 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.82 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.81 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.81 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.81 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.81 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.81 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.81 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.8 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.8 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.8 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.8 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.8 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.8 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.79 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.79 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.79 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.79 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.79 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.79 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.79 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.79 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.78 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.78 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.78 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.78 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.78 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.78 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.78 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.78 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.78 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.77 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.77 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.77 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.77 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.77 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.76 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.76 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.76 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.76 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.76 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.76 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.76 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.76 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.76 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.75 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.75 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.75 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.75 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.74 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.74 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.74 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.74 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.74 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.74 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.74 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.74 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.74 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.74 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.73 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.73 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.73 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.73 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.73 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.73 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.73 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.73 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.72 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.72 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.72 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.72 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.71 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.71 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.71 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.71 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.71 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.71 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.71 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.71 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.71 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.7 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.7 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.7 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.7 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.7 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.7 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.7 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.7 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.69 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.69 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.69 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.69 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.69 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.69 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.69 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.69 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.68 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.68 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.68 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.68 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.68 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.68 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.68 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.67 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.67 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.67 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.67 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.67 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.67 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.67 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.67 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.67 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.67 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.66 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.66 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.66 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.66 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.66 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.66 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.66 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.66 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.66 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.66 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.65 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.65 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.65 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.65 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.65 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.65 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.65 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.65 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.65 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.64 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.64 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.64 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.64 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.64 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.64 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.64 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.63 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.63 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.63 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.62 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.62 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.62 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.62 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.62 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.62 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.62 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.62 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.61 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.61 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.61 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.61 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.61 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.61 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.6 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.6 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.6 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.6 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.6 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.6 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.6 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.6 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.6 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.59 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.58 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.58 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.58 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.58 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.57 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.57 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.56 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.56 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.56 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.56 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.55 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.55 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.55 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.54 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.54 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.54 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.54 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.54 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.52 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.51 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.51 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.49 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.49 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.49 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.48 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.48 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.48 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.47 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.47 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.46 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.46 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.46 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.46 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.45 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.45 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.44 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.44 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.42 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.42 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.41 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.4 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.37 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.37 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.37 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.32 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.32 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.32 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.29 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.29 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.29 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.27 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.27 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.25 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.25 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.25 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.25 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.25 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.25 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.24 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.22 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.21 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.19 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.17 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.15 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.14 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 99.13 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 99.13 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.1 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.09 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 99.09 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.07 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.06 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 99.04 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.03 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 99.01 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 99.0 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 99.0 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.96 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.9 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.88 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.86 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.83 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.81 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.74 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 98.72 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.72 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.71 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.7 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.69 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.67 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.56 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.42 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 98.41 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.41 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.33 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.25 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.18 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.14 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.87 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.86 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.85 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.75 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.72 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.62 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.34 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.28 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.16 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.12 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.0 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 96.71 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 96.53 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 96.47 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.4 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 96.35 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.34 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 95.88 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 95.87 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 95.81 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.77 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 95.67 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 95.52 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 95.47 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 95.45 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.44 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.36 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.15 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.15 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.8 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 94.7 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.51 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 94.4 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.35 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.25 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.16 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 93.95 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 93.94 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 93.92 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.82 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 93.81 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 93.56 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.31 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.31 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.25 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.23 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 93.22 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.04 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.0 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 92.83 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.72 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.7 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.68 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.6 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 92.46 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 92.43 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 92.42 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 92.37 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 92.35 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.25 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.23 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.02 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 91.75 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 91.64 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 91.62 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 91.58 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 91.49 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.48 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 91.42 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 91.38 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 91.36 | |
| 2km1_A | 136 | Protein DRE2; yeast, antiapoptotic, protein bindin | 91.33 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.07 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.99 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 90.91 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 90.86 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.75 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 90.75 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.71 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 90.68 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 90.62 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 90.49 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 90.47 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.39 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.37 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 90.13 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.08 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.02 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 89.99 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 89.66 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 89.43 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 89.36 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 89.04 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.72 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 88.66 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 88.49 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.38 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 88.01 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 87.65 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 87.56 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 87.52 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 87.52 | |
| 1ej6_A | 1289 | Lambda2; icosahedral, non-equivalence, dsRNA virus | 87.36 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 87.23 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 87.18 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.15 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 86.39 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 86.31 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.27 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 85.98 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 85.69 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 85.33 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 85.18 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 84.93 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 84.79 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 84.78 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 84.66 | |
| 3iyl_W | 1299 | VP1; non-enveloped virus, membrane penetration pro | 84.4 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 84.36 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 84.27 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 84.19 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 84.15 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 83.74 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 83.59 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 83.36 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 83.35 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 83.32 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 83.12 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 82.98 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 82.87 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 82.47 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 82.46 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 82.37 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 82.33 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 82.04 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 81.68 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 80.98 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 80.76 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 80.69 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 80.57 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 80.56 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 80.52 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 80.46 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.19 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 80.17 |
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.7e-22 Score=134.86 Aligned_cols=111 Identities=14% Similarity=0.192 Sum_probs=94.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.... ++.+++|+|+|+.|++.|++++...+... +++++++|+.++++
T Consensus 72 ~~vLDlGcGtG~~~~~la~~~~~---------~~~~v~gvD~s~~ml~~A~~~~~~~~~~~----~v~~~~~D~~~~~~- 137 (261)
T 4gek_A 72 TQVYDLGCSLGAATLSVRRNIHH---------DNCKIIAIDNSPAMIERCRRHIDAYKAPT----PVDVIEGDIRDIAI- 137 (261)
T ss_dssp CEEEEETCTTTHHHHHHHHTCCS---------SSCEEEEEESCHHHHHHHHHHHHTSCCSS----CEEEEESCTTTCCC-
T ss_pred CEEEEEeCCCCHHHHHHHHhcCC---------CCCEEEEEECCHHHHHHHHHHHHhhccCc----eEEEeecccccccc-
Confidence 36999999999999999887531 36799999999999999999988776554 89999999988765
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
++||+|++.+++++++ ++..++.++++.|||||++++.|...+..
T Consensus 138 -~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~ 184 (261)
T 4gek_A 138 -ENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED 184 (261)
T ss_dssp -CSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSS
T ss_pred -cccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCC
Confidence 4699999999999986 44678999999999999999998776543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.3e-21 Score=130.41 Aligned_cols=107 Identities=22% Similarity=0.337 Sum_probs=94.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+.. ++.++..|+..++++
T Consensus 39 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~l~~~ 100 (260)
T 1vl5_A 39 EEVLDVATGGGHVANAFAPF-------------VKKVVAFDLTEDILKVARAFIEGNGHQ-----QVEYVQGDAEQMPFT 100 (260)
T ss_dssp CEEEEETCTTCHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCC-CCCSC
T ss_pred CEEEEEeCCCCHHHHHHHHh-------------CCEEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEEecHHhCCCC
Confidence 36999999999999988876 348999999999999999998776543 799999999998888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+++||+|++..++++++++..++.++.++|+|||++++.+...+.
T Consensus 101 ~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~ 145 (260)
T 1vl5_A 101 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPE 145 (260)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCS
T ss_pred CCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCC
Confidence 889999999999999999999999999999999999998765543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=123.23 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=98.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ +..+++++|+|+.+++.++++....+.. ++++...|+...+++.
T Consensus 40 ~vLDiG~G~G~~~~~l~~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~~~~ 104 (219)
T 3dh0_A 40 TVLDVGTGAGFYLPYLSKMVG----------EKGKVYAIDVQEEMVNYAWEKVNKLGLK-----NVEVLKSEENKIPLPD 104 (219)
T ss_dssp EEEESSCTTCTTHHHHHHHHT----------TTCEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEECBTTBCSSCS
T ss_pred EEEEEecCCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEecccccCCCCC
Confidence 699999999999999998863 3579999999999999999998876654 7999999999888888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++..++++++++..++.++.+.|+|||++++.++....
T Consensus 105 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 148 (219)
T 3dh0_A 105 NTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEE 148 (219)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred CCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccc
Confidence 89999999999999999999999999999999999998876543
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-20 Score=124.82 Aligned_cols=107 Identities=27% Similarity=0.383 Sum_probs=95.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+.. ++.++..|+..++++
T Consensus 23 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 84 (239)
T 1xxl_A 23 HRVLDIGAGAGHTALAFSPY-------------VQECIGVDATKEMVEVASSFAQEKGVE-----NVRFQQGTAESLPFP 84 (239)
T ss_dssp CEEEEESCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHHTCC-----SEEEEECBTTBCCSC
T ss_pred CEEEEEccCcCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----CeEEEecccccCCCC
Confidence 36999999999999988775 458999999999999999998776543 799999999988888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++..++++++++..++.++.++|+|||++++.+...+.
T Consensus 85 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 129 (239)
T 1xxl_A 85 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPE 129 (239)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCS
T ss_pred CCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCC
Confidence 889999999999999999999999999999999999998876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-20 Score=122.70 Aligned_cols=105 Identities=16% Similarity=0.196 Sum_probs=95.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. . ..+++++|+|+.+++.+++++...+..+ +++++..|+.+++++.
T Consensus 46 ~vLdiG~G~G~~~~~l~~~-~-----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 46 TCIDIGSGPGALSIALAKQ-S-----------DFSIRALDFSKHMNEIALKNIADANLND----RIQIVQGDVHNIPIED 109 (219)
T ss_dssp EEEEETCTTSHHHHHHHHH-S-----------EEEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECBTTBCSSCT
T ss_pred EEEEECCCCCHHHHHHHHc-C-----------CCeEEEEECCHHHHHHHHHHHHhccccC----ceEEEEcCHHHCCCCc
Confidence 5899999999999999887 2 5789999999999999999988876654 8999999999988888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++++..++.++.+.|+|||++++.+..
T Consensus 110 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 150 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGF 150 (219)
T ss_dssp TCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEecc
Confidence 89999999999999999999999999999999999987643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-21 Score=130.29 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=86.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. ..+|+++|+|+.|++.+++. +++.++.++++++++++
T Consensus 42 ~vLDvGcGtG~~~~~l~~~-------------~~~v~gvD~s~~ml~~a~~~-----------~~v~~~~~~~e~~~~~~ 97 (257)
T 4hg2_A 42 DALDCGCGSGQASLGLAEF-------------FERVHAVDPGEAQIRQALRH-----------PRVTYAVAPAEDTGLPP 97 (257)
T ss_dssp EEEEESCTTTTTHHHHHTT-------------CSEEEEEESCHHHHHTCCCC-----------TTEEEEECCTTCCCCCS
T ss_pred CEEEEcCCCCHHHHHHHHh-------------CCEEEEEeCcHHhhhhhhhc-----------CCceeehhhhhhhcccC
Confidence 5899999999999988875 56899999999999876431 28999999999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++..++|++ +..+++.++.|+|||||++.+..++.+.
T Consensus 98 ~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~~~~~~~~ 140 (257)
T 4hg2_A 98 ASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAAVTYGLTR 140 (257)
T ss_dssp SCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEEEEECCCB
T ss_pred CcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 999999999999887 5788999999999999999988776543
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.3e-20 Score=126.89 Aligned_cols=108 Identities=17% Similarity=0.039 Sum_probs=96.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+..+ ++.++..|+.+++++
T Consensus 84 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~ 147 (297)
T 2o57_A 84 AKGLDLGAGYGGAARFLVRKF------------GVSIDCLNIAPVQNKRNEEYNNQAGLAD----NITVKYGSFLEIPCE 147 (297)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHHTCTT----TEEEEECCTTSCSSC
T ss_pred CEEEEeCCCCCHHHHHHHHHh------------CCEEEEEeCCHHHHHHHHHHHHhcCCCc----ceEEEEcCcccCCCC
Confidence 369999999999999998875 3589999999999999999988776654 899999999998888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++..++++++++..++.++.++|||||++++.+....
T Consensus 148 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 191 (297)
T 2o57_A 148 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE 191 (297)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred CCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccC
Confidence 88999999999999999999999999999999999999876543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.6e-20 Score=125.07 Aligned_cols=105 Identities=20% Similarity=0.171 Sum_probs=95.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++....++.+ +++++..|+.+++++
T Consensus 48 ~~vLDiGcG~G~~~~~la~~-~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~ 111 (267)
T 3kkz_A 48 SLIADIGCGTGGQTMVLAGH-V-----------TGQVTGLDFLSGFIDIFNRNARQSGLQN----RVTGIVGSMDDLPFR 111 (267)
T ss_dssp CEEEEETCTTCHHHHHHHTT-C-----------SSEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECCTTSCCCC
T ss_pred CEEEEeCCCCCHHHHHHHhc-c-----------CCEEEEEeCCHHHHHHHHHHHHHcCCCc----CcEEEEcChhhCCCC
Confidence 36999999999999998887 2 5799999999999999999998877654 799999999998887
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..+++++ ++..++.++.+.|+|||++++.+..
T Consensus 112 ~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~~~~~~ 152 (267)
T 3kkz_A 112 NEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLAVSECS 152 (267)
T ss_dssp TTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEEEEEEE
T ss_pred CCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEEEEEee
Confidence 8899999999999999 8999999999999999999998765
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-20 Score=124.89 Aligned_cols=105 Identities=18% Similarity=0.098 Sum_probs=93.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....++.+ +++++..|+.+.++
T Consensus 38 ~~VLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~----~v~~~~~d~~~~~~- 100 (256)
T 1nkv_A 38 TRILDLGSGSGEMLCTWARDH------------GITGTGIDMSSLFTAQAKRRAEELGVSE----RVHFIHNDAAGYVA- 100 (256)
T ss_dssp CEEEEETCTTCHHHHHHHHHT------------CCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEESCCTTCCC-
T ss_pred CEEEEECCCCCHHHHHHHHhc------------CCeEEEEeCCHHHHHHHHHHHHhcCCCc----ceEEEECChHhCCc-
Confidence 369999999999999998874 3589999999999999999988776654 89999999998876
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++..++.++.++|||||++++.+..
T Consensus 101 ~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 142 (256)
T 1nkv_A 101 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 142 (256)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCc
Confidence 788999999999999999999999999999999999997754
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-20 Score=124.74 Aligned_cols=107 Identities=27% Similarity=0.278 Sum_probs=96.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+..+ ++.++..|+.+++++
T Consensus 63 ~~vLDiGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~ 126 (273)
T 3bus_A 63 DRVLDVGCGIGKPAVRLATAR------------DVRVTGISISRPQVNQANARATAAGLAN----RVTFSYADAMDLPFE 126 (273)
T ss_dssp CEEEEESCTTSHHHHHHHHHS------------CCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECCTTSCCSC
T ss_pred CEEEEeCCCCCHHHHHHHHhc------------CCEEEEEeCCHHHHHHHHHHHHhcCCCc----ceEEEECccccCCCC
Confidence 369999999999999988863 4689999999999999999988776654 799999999998888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++..+++++++...++.++.+.|+|||++++.++..
T Consensus 127 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 169 (273)
T 3bus_A 127 DASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVL 169 (273)
T ss_dssp TTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEEEEeec
Confidence 8899999999999999999999999999999999999987654
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-20 Score=123.59 Aligned_cols=107 Identities=21% Similarity=0.354 Sum_probs=94.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++..... ++.++..|+.+.++.
T Consensus 46 ~~vLDiG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~~~~ 107 (234)
T 3dtn_A 46 PDILDLGAGTGLLSAFLMEKYP-----------EATFTLVDMSEKMLEIAKNRFRGNL-------KVKYIEADYSKYDFE 107 (234)
T ss_dssp CEEEEETCTTSHHHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHTCSCT-------TEEEEESCTTTCCCC
T ss_pred CeEEEecCCCCHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHhhccCC-------CEEEEeCchhccCCC
Confidence 3699999999999999988864 6799999999999999999987654 799999999988766
Q ss_pred CCCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 81 SDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
++||+|++..+++++++.. .++.++.+.|+|||++++.+...+..
T Consensus 108 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 154 (234)
T 3dtn_A 108 -EKYDMVVSALSIHHLEDEDKKELYKRSYSILKESGIFINADLVHGET 154 (234)
T ss_dssp -SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSS
T ss_pred -CCceEEEEeCccccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCC
Confidence 8899999999999998665 59999999999999999988765543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=5.8e-20 Score=123.17 Aligned_cols=104 Identities=18% Similarity=0.208 Sum_probs=94.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ .+++++|+|+.+++.++++....+..+ +++++..|+..++++.
T Consensus 49 ~vLDiG~G~G~~~~~l~~~~~------------~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~ 112 (257)
T 3f4k_A 49 KIADIGCGTGGQTLFLADYVK------------GQITGIDLFPDFIEIFNENAVKANCAD----RVKGITGSMDNLPFQN 112 (257)
T ss_dssp EEEEETCTTSHHHHHHHHHCC------------SEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECCTTSCSSCT
T ss_pred eEEEeCCCCCHHHHHHHHhCC------------CeEEEEECCHHHHHHHHHHHHHcCCCC----ceEEEECChhhCCCCC
Confidence 699999999999999988743 399999999999999999998877664 6999999999888888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..+++++ ++..++.++.++|+|||++++.+..
T Consensus 113 ~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~~~~~ 152 (257)
T 3f4k_A 113 EELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAVSEAS 152 (257)
T ss_dssp TCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred CCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEEEEee
Confidence 899999999999998 7899999999999999999998754
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.4e-20 Score=124.25 Aligned_cols=106 Identities=23% Similarity=0.280 Sum_probs=96.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++....+.. ++++...|+...+++
T Consensus 39 ~~vLDiG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~~~ 102 (276)
T 3mgg_A 39 AKVLEAGCGIGAQTVILAKNNP-----------DAEITSIDISPESLEKARENTEKNGIK-----NVKFLQANIFSLPFE 102 (276)
T ss_dssp CEEEETTCTTSHHHHHHHHHCT-----------TSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGCCSC
T ss_pred CeEEEecCCCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-----CcEEEEcccccCCCC
Confidence 3699999999999999988753 679999999999999999998876654 799999999998888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++..++.++.+.|+|||++++.+..
T Consensus 103 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (276)
T 3mgg_A 103 DSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGD 144 (276)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcC
Confidence 889999999999999999999999999999999999998754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=126.51 Aligned_cols=108 Identities=11% Similarity=0.127 Sum_probs=93.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEecccccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
.+|||+|||+|..+..+++.+. ...+++++|+|+.+++.++++.... +.. .+++++..|+.++++
T Consensus 38 ~~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~~v~~~~~d~~~~~~ 103 (299)
T 3g5t_A 38 KLLVDVGCGPGTATLQMAQELK----------PFEQIIGSDLSATMIKTAEVIKEGSPDTY----KNVSFKISSSDDFKF 103 (299)
T ss_dssp SEEEEETCTTTHHHHHHHHHSS----------CCSEEEEEESCHHHHHHHHHHHHHCC-CC----TTEEEEECCTTCCGG
T ss_pred CEEEEECCCCCHHHHHHHHhCC----------CCCEEEEEeCCHHHHHHHHHHHHhccCCC----CceEEEEcCHHhCCc
Confidence 3699999999999999998652 3689999999999999999998775 222 289999999998876
Q ss_pred CC------CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ES------DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~------~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.. ++||+|++..+++++ ++..++.++.++|+|||++++.+++.
T Consensus 104 ~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~ 152 (299)
T 3g5t_A 104 LGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYAD 152 (299)
T ss_dssp GCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred cccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 66 799999999999999 99999999999999999999865543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-19 Score=120.02 Aligned_cols=111 Identities=24% Similarity=0.267 Sum_probs=95.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+.......++.+...|+...+++
T Consensus 32 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 98 (235)
T 3sm3_A 32 DEILDIGCGSGKISLELASK-------------GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFH 98 (235)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSC
T ss_pred CeEEEECCCCCHHHHHHHhC-------------CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCC
Confidence 36999999999999988876 46899999999999999999887665332223689999999988888
Q ss_pred CCCeeEEEEccccccccCHH---HHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRID---KALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~---~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++..+++++++.. .++.++.++|+|||++++.++...
T Consensus 99 ~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (235)
T 3sm3_A 99 DSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQN 145 (235)
T ss_dssp TTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCC
T ss_pred CCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 88999999999999998877 899999999999999999887553
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.8e-20 Score=125.50 Aligned_cols=104 Identities=17% Similarity=0.214 Sum_probs=93.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+..+ +++++..|+.+.+ +.
T Consensus 71 ~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 133 (285)
T 4htf_A 71 RVLDAGGGEGQTAIKMAER-------------GHQVILCDLSAQMIDRAKQAAEAKGVSD----NMQFIHCAAQDVASHL 133 (285)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHC-CCGG----GEEEEESCGGGTGGGC
T ss_pred EEEEeCCcchHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHHHhcCCCc----ceEEEEcCHHHhhhhc
Confidence 6999999999999988876 4689999999999999999988776543 8999999998886 67
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++++..++.++.++|+|||++++....
T Consensus 134 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 175 (285)
T 4htf_A 134 ETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYN 175 (285)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeC
Confidence 789999999999999999999999999999999999987754
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=123.16 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=94.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++.. +.+++++|+|+.+++.++++..... +++++..|+.+.+++
T Consensus 57 ~~vLdiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~~~~ 117 (266)
T 3ujc_A 57 SKVLDIGSGLGGGCMYINEKY------------GAHTHGIDICSNIVNMANERVSGNN-------KIIFEANDILTKEFP 117 (266)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHTCCSCT-------TEEEEECCTTTCCCC
T ss_pred CEEEEECCCCCHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHHhhcCC-------CeEEEECccccCCCC
Confidence 369999999999999998874 3689999999999999998876542 899999999998888
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++..+++++ +++..++.++.++|+|||++++.+...+.
T Consensus 118 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 164 (266)
T 3ujc_A 118 ENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATE 164 (266)
T ss_dssp TTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESC
T ss_pred CCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 8899999999999999 78999999999999999999998876544
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=120.88 Aligned_cols=102 Identities=10% Similarity=0.016 Sum_probs=83.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc-----------CCCCCCCceeE
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-----------KVPVPNPRLRF 69 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-----------~~~~~~~~~~~ 69 (131)
.+|||+|||+|..+..+++. +.+|+++|+|+.|++.++++..... .. .++++
T Consensus 24 ~~vLD~GCG~G~~~~~la~~-------------g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~----~~v~~ 86 (203)
T 1pjz_A 24 ARVLVPLCGKSQDMSWLSGQ-------------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAA----PGIEI 86 (203)
T ss_dssp CEEEETTTCCSHHHHHHHHH-------------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEEC----SSSEE
T ss_pred CEEEEeCCCCcHhHHHHHHC-------------CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccC----CccEE
Confidence 36999999999999998886 4689999999999999998764310 01 27999
Q ss_pred EecccccCCCCC-CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEE
Q psy890 70 LEANAEELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 70 ~~~d~~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+|+.++++.. ++||+|++..++++++ +...++.+++++|||||+++++
T Consensus 87 ~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~ 139 (203)
T 1pjz_A 87 WCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139 (203)
T ss_dssp EEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEE
T ss_pred EECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 999999887654 7899999998898886 4567899999999999984444
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=123.67 Aligned_cols=105 Identities=21% Similarity=0.261 Sum_probs=93.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ...+++++|+|+.++..++++....+ .+++++..|+.+++++
T Consensus 24 ~~vLDiGcG~G~~~~~l~~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~------~~v~~~~~d~~~~~~~ 87 (284)
T 3gu3_A 24 VHIVDYGCGYGYLGLVLMPLLP----------EGSKYTGIDSGETLLAEARELFRLLP------YDSEFLEGDATEIELN 87 (284)
T ss_dssp CEEEEETCTTTHHHHHHTTTSC----------TTCEEEEEESCHHHHHHHHHHHHSSS------SEEEEEESCTTTCCCS
T ss_pred CeEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEcchhhcCcC
Confidence 3699999999999999988764 24799999999999999999987644 2799999999988764
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++++..++.++++.|+|||++++.+..
T Consensus 88 -~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 88 -DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp -SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 68999999999999999999999999999999999998765
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.2e-19 Score=128.35 Aligned_cols=109 Identities=18% Similarity=0.100 Sum_probs=94.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-----c-CCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-----F-KVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~d~~ 75 (131)
+|||+|||+|.++..+++... +..+++++|+|+.+++.++++.... + ... ++++++..|+.
T Consensus 86 ~VLDlGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~---~~v~~~~~d~~ 152 (383)
T 4fsd_A 86 TVLDLGCGTGRDVYLASKLVG----------EHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSR---SNVRFLKGFIE 152 (383)
T ss_dssp EEEEESCTTSHHHHHHHHHHT----------TTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTC---CCEEEEESCTT
T ss_pred EEEEecCccCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCC---CceEEEEccHH
Confidence 699999999999999998864 3679999999999999999987643 1 111 28999999998
Q ss_pred cC------CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 76 EL------PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 76 ~~------~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++ +++.++||+|+++.++++++++..++.++.++|||||++++.+...
T Consensus 153 ~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 206 (383)
T 4fsd_A 153 NLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYA 206 (383)
T ss_dssp CGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred HhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecc
Confidence 86 7778899999999999999999999999999999999999987654
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-20 Score=118.35 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=90.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ++.++..|+.+++++
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~~ 99 (203)
T 3h2b_A 43 GVILDVGSGTGRWTGHLASL-------------GHQIEGLEPATRLVELARQTHP----------SVTFHHGTITDLSDS 99 (203)
T ss_dssp SCEEEETCTTCHHHHHHHHT-------------TCCEEEECCCHHHHHHHHHHCT----------TSEEECCCGGGGGGS
T ss_pred CeEEEecCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHhCC----------CCeEEeCcccccccC
Confidence 36999999999999988876 4589999999999999988731 789999999988887
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++..++++++ ++..++.++.+.|+|||++++..+....
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 146 (203)
T 3h2b_A 100 PKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPS 146 (203)
T ss_dssp CCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSS
T ss_pred CCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCc
Confidence 88999999999999997 8899999999999999999998766544
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-19 Score=123.75 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=95.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++.. +.+++++|+++.+++.++++....++.+ +++++..|+.+++++.
T Consensus 120 ~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 183 (312)
T 3vc1_A 120 TLVDAGCGRGGSMVMAHRRF------------GSRVEGVTLSAAQADFGNRRARELRIDD----HVRSRVCNMLDTPFDK 183 (312)
T ss_dssp EEEEESCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECCTTSCCCCT
T ss_pred EEEEecCCCCHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC----ceEEEECChhcCCCCC
Confidence 69999999999999998874 4689999999999999999998877664 8999999999988888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..+++++ ++..++.++.++|||||++++.+....
T Consensus 184 ~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~ 225 (312)
T 3vc1_A 184 GAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWN 225 (312)
T ss_dssp TCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred CCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEcccc
Confidence 899999999999999 599999999999999999998875443
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-19 Score=116.98 Aligned_cols=106 Identities=19% Similarity=0.117 Sum_probs=90.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++.. .+.+++++|+|+.+++.++++....+ .++.++..|+.+.+++.
T Consensus 26 ~vLDiGcG~G~~~~~~~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~ 87 (209)
T 2p8j_A 26 TVLDCGAGGDLPPLSIFVE------------DGYKTYGIEISDLQLKKAENFSRENN------FKLNISKGDIRKLPFKD 87 (209)
T ss_dssp EEEEESCCSSSCTHHHHHH------------TTCEEEEEECCHHHHHHHHHHHHHHT------CCCCEEECCTTSCCSCT
T ss_pred EEEEECCCCCHHHHHHHHh------------CCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEECchhhCCCCC
Confidence 6999999999986655544 25689999999999999999887654 17889999999888878
Q ss_pred CCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++..+++++ .+...++.++.+.|+|||++++.+++.+.
T Consensus 88 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 88 ESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp TCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred CceeEEEEcChHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 899999999999988 67889999999999999999998877544
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.1e-19 Score=117.93 Aligned_cols=100 Identities=15% Similarity=0.215 Sum_probs=89.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. . ++.++..|+.+.+++
T Consensus 47 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~--~-------~~~~~~~d~~~~~~~ 104 (220)
T 3hnr_A 47 GNVLEFGVGTGNLTNKLLLA-------------GRTVYGIEPSREMRMIAKEKLP--K-------EFSITEGDFLSFEVP 104 (220)
T ss_dssp SEEEEECCTTSHHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHSC--T-------TCCEESCCSSSCCCC
T ss_pred CeEEEeCCCCCHHHHHHHhC-------------CCeEEEEeCCHHHHHHHHHhCC--C-------ceEEEeCChhhcCCC
Confidence 36999999999999988875 4689999999999999998876 2 789999999998877
Q ss_pred CCCeeEEEEccccccccCHHH--HHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDK--ALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~--~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..+++++++... ++.++.+.|+|||++++.+...
T Consensus 105 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 105 -TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp -SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred -CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 89999999999999998876 9999999999999999987544
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=120.48 Aligned_cols=101 Identities=19% Similarity=0.215 Sum_probs=89.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++.. . .++.++..|+..++++
T Consensus 46 ~~vLD~GcG~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~-~-------~~~~~~~~d~~~~~~~ 105 (253)
T 3g5l_A 46 KTVLDLGCGFGWHCIYAAEHG------------AKKVLGIDLSERMLTEAKRKTT-S-------PVVCYEQKAIEDIAIE 105 (253)
T ss_dssp CEEEEETCTTCHHHHHHHHTT------------CSEEEEEESCHHHHHHHHHHCC-C-------TTEEEEECCGGGCCCC
T ss_pred CEEEEECCCCCHHHHHHHHcC------------CCEEEEEECCHHHHHHHHHhhc-c-------CCeEEEEcchhhCCCC
Confidence 369999999999999888762 2389999999999999998876 1 2899999999988887
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++..++++++++..++.++.++|+|||++++...
T Consensus 106 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 146 (253)
T 3g5l_A 106 PDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVE 146 (253)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEEeC
Confidence 88999999999999999999999999999999999998643
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-19 Score=117.81 Aligned_cols=100 Identities=13% Similarity=0.181 Sum_probs=88.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+|+.+++.++++..... +++++..|+.+.+ +.
T Consensus 54 ~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~~-~~ 112 (216)
T 3ofk_A 54 NGLEIGCAAGAFTEKLAPH-------------CKRLTVIDVMPRAIGRACQRTKRWS-------HISWAATDILQFS-TA 112 (216)
T ss_dssp EEEEECCTTSHHHHHHGGG-------------EEEEEEEESCHHHHHHHHHHTTTCS-------SEEEEECCTTTCC-CS
T ss_pred cEEEEcCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHhcccCC-------CeEEEEcchhhCC-CC
Confidence 6899999999999988876 4589999999999999999887644 8999999998877 56
Q ss_pred CCeeEEEEccccccccCH---HHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++++ ..++.++.++|+|||++++....
T Consensus 113 ~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 156 (216)
T 3ofk_A 113 ELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSAR 156 (216)
T ss_dssp CCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 889999999999999876 57799999999999999986543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.8e-19 Score=114.86 Aligned_cols=103 Identities=16% Similarity=0.033 Sum_probs=90.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+.. ++.+...|+.+.++ .
T Consensus 35 ~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~~~~-~ 95 (199)
T 2xvm_A 35 KTLDLGCGNGRNSLYLAAN-------------GYDVDAWDKNAMSIANVERIKSIENLD-----NLHTRVVDLNNLTF-D 95 (199)
T ss_dssp EEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEECCGGGCCC-C
T ss_pred eEEEEcCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHhCCCC-----CcEEEEcchhhCCC-C
Confidence 6999999999999988875 458999999999999999998776643 79999999988877 7
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++ +....+.++.+.|+|||++++++...
T Consensus 96 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 139 (199)
T 2xvm_A 96 RQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMD 139 (199)
T ss_dssp CCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred CCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeec
Confidence 8899999999999987 78999999999999999988876543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=119.87 Aligned_cols=99 Identities=15% Similarity=0.237 Sum_probs=87.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+|+.+++.++++... ++.++..|+.+. .++
T Consensus 45 ~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~~---------~v~~~~~d~~~~-~~~ 101 (250)
T 2p7i_A 45 NLLELGSFKGDFTSRLQEH-------------FNDITCVEASEEAISHAQGRLKD---------GITYIHSRFEDA-QLP 101 (250)
T ss_dssp CEEEESCTTSHHHHHHTTT-------------CSCEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGC-CCS
T ss_pred cEEEECCCCCHHHHHHHHh-------------CCcEEEEeCCHHHHHHHHHhhhC---------CeEEEEccHHHc-CcC
Confidence 6999999999999988775 35799999999999999988643 588999998877 456
Q ss_pred CCeeEEEEccccccccCHHHHHHHHH-HhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~-~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++++..++.++. ++|||||++++.+...
T Consensus 102 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG~l~i~~~~~ 144 (250)
T 2p7i_A 102 RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNA 144 (250)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred CcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCCEEEEEcCCh
Confidence 78999999999999999999999999 9999999999987554
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=119.06 Aligned_cols=103 Identities=21% Similarity=0.272 Sum_probs=91.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++... .++.++..|+.+.+++
T Consensus 55 ~~vLDiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~ 113 (242)
T 3l8d_A 55 AEVLDVGCGDGYGTYKLSRT-------------GYKAVGVDISEVMIQKGKERGEG--------PDLSFIKGDLSSLPFE 113 (242)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHTTTCB--------TTEEEEECBTTBCSSC
T ss_pred CeEEEEcCCCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHhhccc--------CCceEEEcchhcCCCC
Confidence 36999999999999988886 46899999999999999887521 2799999999998888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++..++++++++..++.++.+.|+|||++++......
T Consensus 114 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 114 NEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp TTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred CCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 88999999999999999999999999999999999999875543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-19 Score=119.88 Aligned_cols=99 Identities=28% Similarity=0.320 Sum_probs=88.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. .. . .++.++..|+.+++++.
T Consensus 42 ~vLDiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~-~~-~----~~~~~~~~d~~~~~~~~ 102 (263)
T 2yqz_A 42 VFLELGVGTGRIALPLIAR-------------GYRYIALDADAAMLEVFRQKIA-GV-D----RKVQVVQADARAIPLPD 102 (263)
T ss_dssp EEEEETCTTSTTHHHHHTT-------------TCEEEEEESCHHHHHHHHHHTT-TS-C----TTEEEEESCTTSCCSCT
T ss_pred EEEEeCCcCCHHHHHHHHC-------------CCEEEEEECCHHHHHHHHHHhh-cc-C----CceEEEEcccccCCCCC
Confidence 6999999999999988775 4689999999999999998872 22 1 28999999998888878
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|++..+++++++....+.++.++|+|||++++.
T Consensus 103 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 103 ESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp TCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcEEEEE
Confidence 89999999999999999999999999999999999886
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-19 Score=118.66 Aligned_cols=110 Identities=13% Similarity=0.045 Sum_probs=90.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++...++.+....+++++..|+...+..
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 31 RRVIDLGCGQGNLLKILLKDSF-----------FEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp CEEEEETCTTCHHHHHHHHCTT-----------CSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred CEEEEeCCCCCHHHHHHHhhCC-----------CCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 3699999999999999888643 47999999999999999999875543210001689999998776666
Q ss_pred CCCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++..+++++++. ..++.++.+.|+|||+++++..
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 6789999999999999855 8999999999999998877654
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=119.35 Aligned_cols=105 Identities=13% Similarity=0.088 Sum_probs=90.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+... +++++..|+.+.+ +.
T Consensus 69 ~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~-~~ 130 (235)
T 3lcc_A 69 RALVPGCGGGHDVVAMASP-------------ERFVVGLDISESALAKANETYGSSPKAE----YFSFVKEDVFTWR-PT 130 (235)
T ss_dssp EEEEETCTTCHHHHHHCBT-------------TEEEEEECSCHHHHHHHHHHHTTSGGGG----GEEEECCCTTTCC-CS
T ss_pred CEEEeCCCCCHHHHHHHhC-------------CCeEEEEECCHHHHHHHHHHhhccCCCc----ceEEEECchhcCC-CC
Confidence 6899999999999888653 5789999999999999999987643332 7999999998876 44
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+||+|++..++++++ +...++.++.+.|+|||++++.++...
T Consensus 131 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 175 (235)
T 3lcc_A 131 ELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMYPIT 175 (235)
T ss_dssp SCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEECCCS
T ss_pred CCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEeccc
Confidence 5899999999999998 889999999999999999999876543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=123.67 Aligned_cols=108 Identities=12% Similarity=-0.009 Sum_probs=93.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++.... +..+++++|+|+.+++.++++....+..+ +++++..|+.+.+++
T Consensus 121 ~vLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~- 185 (305)
T 3ocj_A 121 VVASVPCGWMSELLALDYSAC----------PGVQLVGIDYDPEALDGATRLAAGHALAG----QITLHRQDAWKLDTR- 185 (305)
T ss_dssp EEEETTCTTCHHHHTSCCTTC----------TTCEEEEEESCHHHHHHHHHHHTTSTTGG----GEEEEECCGGGCCCC-
T ss_pred EEEEecCCCCHHHHHHHHhcC----------CCCeEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEECchhcCCcc-
Confidence 699999999999988853321 36799999999999999999998776553 699999999998877
Q ss_pred CCeeEEEEccccccccCHHH---HHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDK---ALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~---~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..+++++++... ++.++.+.|+|||++++.++..+
T Consensus 186 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 186 EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 89999999999999987765 79999999999999999886654
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-19 Score=120.88 Aligned_cols=106 Identities=11% Similarity=0.008 Sum_probs=93.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++.. +.+++++|+|+.+++.++++....++.+ ++.+...|+.++
T Consensus 74 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~--- 134 (302)
T 3hem_A 74 MTLLDIGCGWGSTMRHAVAEY------------DVNVIGLTLSENQYAHDKAMFDEVDSPR----RKEVRIQGWEEF--- 134 (302)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEECCHHHHHHHHHHHHHSCCSS----CEEEEECCGGGC---
T ss_pred CEEEEeeccCcHHHHHHHHhC------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEECCHHHc---
Confidence 369999999999999998875 3689999999999999999998877664 799999999876
Q ss_pred CCCeeEEEEccccccccCH---------HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRI---------DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~---------~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|++..++++++++ ..++.++.++|||||++++.+...+.
T Consensus 135 ~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 135 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 6789999999999999554 79999999999999999998876543
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=118.15 Aligned_cols=111 Identities=11% Similarity=0.064 Sum_probs=90.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++...++.+....+++++..|+...+..
T Consensus 31 ~~vLDiGcG~G~~~~~l~~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (219)
T 3jwg_A 31 KKVIDLGCGEGNLLSLLLKDKS-----------FEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKR 99 (219)
T ss_dssp CEEEEETCTTCHHHHHHHTSTT-----------CCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGG
T ss_pred CEEEEecCCCCHHHHHHHhcCC-----------CCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccc
Confidence 3699999999999998887642 47999999999999999999876543310001689999998777666
Q ss_pred CCCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..+++++++. ..++.++.+.|+|||+++.+...
T Consensus 100 ~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~ 143 (219)
T 3jwg_A 100 FSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNK 143 (219)
T ss_dssp GTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBG
T ss_pred cCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccch
Confidence 7899999999999999855 79999999999999977766543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.7e-19 Score=118.48 Aligned_cols=106 Identities=20% Similarity=0.174 Sum_probs=90.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....+. .++.++..|+...++..
T Consensus 82 ~vLDiGcG~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~-----~~~~~~~~d~~~~~~~~ 144 (241)
T 2ex4_A 82 CALDCGAGIGRITKRLLLPL------------FREVDMVDITEDFLVQAKTYLGEEGK-----RVRNYFCCGLQDFTPEP 144 (241)
T ss_dssp EEEEETCTTTHHHHHTTTTT------------CSEEEEEESCHHHHHHHHHHTGGGGG-----GEEEEEECCGGGCCCCS
T ss_pred EEEEECCCCCHHHHHHHHhc------------CCEEEEEeCCHHHHHHHHHHhhhcCC-----ceEEEEEcChhhcCCCC
Confidence 69999999999999887752 35899999999999999999876531 16899999998887777
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..+++++++ ...++.++.++|+|||++++.+....
T Consensus 145 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 189 (241)
T 2ex4_A 145 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQ 189 (241)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBS
T ss_pred CCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCC
Confidence 78999999999999987 45899999999999999999876443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-19 Score=118.64 Aligned_cols=99 Identities=16% Similarity=0.071 Sum_probs=89.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++. +++.++..|+.+.+ +.
T Consensus 36 ~vLdiG~G~G~~~~~l~~~~~-----------~~~v~~~D~s~~~~~~a~~~~----------~~~~~~~~d~~~~~-~~ 93 (259)
T 2p35_A 36 NGYDLGCGPGNSTELLTDRYG-----------VNVITGIDSDDDMLEKAADRL----------PNTNFGKADLATWK-PA 93 (259)
T ss_dssp SEEEETCTTTHHHHHHHHHHC-----------TTSEEEEESCHHHHHHHHHHS----------TTSEEEECCTTTCC-CS
T ss_pred EEEEecCcCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHhC----------CCcEEEECChhhcC-cc
Confidence 699999999999999988864 578999999999999998872 17899999998877 67
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++++..++.++.+.|+|||++++....
T Consensus 94 ~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 134 (259)
T 2p35_A 94 QKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPD 134 (259)
T ss_dssp SCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEEC
T ss_pred CCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCC
Confidence 78999999999999999999999999999999999987654
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-19 Score=119.18 Aligned_cols=102 Identities=17% Similarity=0.175 Sum_probs=90.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++..... ++.++..|+...+++.
T Consensus 96 ~vLDiG~G~G~~~~~l~~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~-------~~~~~~~d~~~~~~~~ 156 (254)
T 1xtp_A 96 RALDCGAGIGRITKNLLTKL------------YATTDLLEPVKHMLEEAKRELAGMP-------VGKFILASMETATLPP 156 (254)
T ss_dssp EEEEETCTTTHHHHHTHHHH------------CSEEEEEESCHHHHHHHHHHTTTSS-------EEEEEESCGGGCCCCS
T ss_pred EEEEECCCcCHHHHHHHHhh------------cCEEEEEeCCHHHHHHHHHHhccCC-------ceEEEEccHHHCCCCC
Confidence 69999999999999888763 3579999999999999999886542 8999999999888777
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++ ++..++.++.+.|+|||++++.+..
T Consensus 157 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 199 (254)
T 1xtp_A 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecC
Confidence 8999999999999994 5889999999999999999998753
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-18 Score=118.59 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=91.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ .+++++|+|+.+++.++++....+..+ ++.+...|+.+++
T Consensus 66 ~~vLDiGcG~G~~~~~l~~~~~------------~~v~gvd~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~-- 127 (287)
T 1kpg_A 66 MTLLDVGCGWGATMMRAVEKYD------------VNVVGLTLSKNQANHVQQLVANSENLR----SKRVLLAGWEQFD-- 127 (287)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC------------CEEEEEESCHHHHHHHHHHHHTCCCCS----CEEEEESCGGGCC--
T ss_pred CEEEEECCcccHHHHHHHHHcC------------CEEEEEECCHHHHHHHHHHHHhcCCCC----CeEEEECChhhCC--
Confidence 3699999999999999987653 489999999999999999988766554 8999999998765
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..+++++ +++..++.++.++|||||++++.+....
T Consensus 128 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 128 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred -CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 789999999999999 6789999999999999999999876643
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.3e-19 Score=119.30 Aligned_cols=102 Identities=10% Similarity=-0.004 Sum_probs=84.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc----------------cCCCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL----------------FKVPVPNP 65 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~----------------~~~~~~~~ 65 (131)
+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++.... ... .
T Consensus 71 ~vLD~GCG~G~~~~~La~~-------------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 133 (252)
T 2gb4_A 71 RVFFPLCGKAIEMKWFADR-------------GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS----G 133 (252)
T ss_dssp EEEETTCTTCTHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT----S
T ss_pred eEEEeCCCCcHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCC----C
Confidence 6999999999999988875 568999999999999998765310 001 2
Q ss_pred ceeEEecccccCCCCC-CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 66 RLRFLEANAEELPIES-DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 66 ~~~~~~~d~~~~~~~~-~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+++++++|+.+++... ++||+|++..++++++ +...++.++.++|||||+++++.
T Consensus 134 ~i~~~~~D~~~l~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~ 191 (252)
T 2gb4_A 134 SISLYCCSIFDLPRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV 191 (252)
T ss_dssp SEEEEESCTTTGGGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceEEEECccccCCcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE
Confidence 7999999999887653 7899999998888876 46789999999999999997543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.4e-19 Score=114.68 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=88.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.+++ .+.. ++.++..|+.+. ++.
T Consensus 49 ~vLdiG~G~G~~~~~l~~~-------------~~~v~~~D~s~~~~~~a~~----~~~~-----~~~~~~~d~~~~-~~~ 105 (218)
T 3ou2_A 49 DVLELASGTGYWTRHLSGL-------------ADRVTALDGSAEMIAEAGR----HGLD-----NVEFRQQDLFDW-TPD 105 (218)
T ss_dssp EEEEESCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHGG----GCCT-----TEEEEECCTTSC-CCS
T ss_pred eEEEECCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHh----cCCC-----CeEEEecccccC-CCC
Confidence 6999999999999998886 4689999999999999987 2222 799999999887 677
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++..+++++++. ..++.++.+.|+|||++++.++..+
T Consensus 106 ~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 150 (218)
T 3ou2_A 106 RQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDH 150 (218)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred CceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 899999999999999874 8999999999999999999987764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.2e-19 Score=122.00 Aligned_cols=110 Identities=14% Similarity=0.053 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCe--EEEEeCCHHHHHHHHHHhhhc-cCCCCCCCce--eEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH--VTVADINRAMLDVGEQRARDL-FKVPVPNPRL--RFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~d~~~ 76 (131)
+|||||||+|..+..++..+.... +..+ ++++|+|++|++.++++.... +.. ++ .+...+..+
T Consensus 55 ~VLDiG~GtG~~~~~~l~~l~~~~-------~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~-----~v~~~~~~~~~~~ 122 (292)
T 2aot_A 55 KILSIGGGAGEIDLQILSKVQAQY-------PGVCINNEVVEPSAEQIAKYKELVAKTSNLE-----NVKFAWHKETSSE 122 (292)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHS-------TTCEEEEEEECSCHHHHHHHHHHHHTCSSCT-----TEEEEEECSCHHH
T ss_pred eEEEEcCCCCHHHHHHHHHHHhhC-------CCceeeEEEEeCCHHHHHHHHHHHHhccCCC-----cceEEEEecchhh
Confidence 699999999988776655432100 1343 499999999999999987643 222 44 445666554
Q ss_pred CC------CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 77 LP------IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 77 ~~------~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+ +++++||+|++.+++|+++++..++.+++++|||||++++.....
T Consensus 123 ~~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 123 YQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp HHHHHHTTTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred hhhhhccccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 32 456889999999999999999999999999999999999876543
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.79 E-value=8.9e-19 Score=110.84 Aligned_cols=98 Identities=21% Similarity=0.258 Sum_probs=86.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++ . +++++...| .+++.
T Consensus 20 ~vLDiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~---~-------~~v~~~~~d---~~~~~ 73 (170)
T 3i9f_A 20 VIVDYGCGNGFYCKYLLEF-------------ATKLYCIDINVIALKEVKEK---F-------DSVITLSDP---KEIPD 73 (170)
T ss_dssp EEEEETCTTCTTHHHHHTT-------------EEEEEEECSCHHHHHHHHHH---C-------TTSEEESSG---GGSCT
T ss_pred eEEEECCCCCHHHHHHHhh-------------cCeEEEEeCCHHHHHHHHHh---C-------CCcEEEeCC---CCCCC
Confidence 6999999999999988876 23899999999999999888 1 278999888 55667
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++..++++++++..++.++.+.|+|||++++.++....
T Consensus 74 ~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 117 (170)
T 3i9f_A 74 NSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRKEN 117 (170)
T ss_dssp TCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECSSC
T ss_pred CceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCccc
Confidence 89999999999999999999999999999999999999876553
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=111.94 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=83.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
.+|||+|||+|..+..+++. ..+++++|+|+.+++.++++....+.. +++++..+...++ +
T Consensus 24 ~~vLDiGcG~G~~~~~la~~-------------~~~v~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~~~~~l~~~ 85 (185)
T 3mti_A 24 SIVVDATMGNGNDTAFLAGL-------------SKKVYAFDVQEQALGKTSQRLSDLGIE-----NTELILDGHENLDHY 85 (185)
T ss_dssp CEEEESCCTTSHHHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHHTCC-----CEEEEESCGGGGGGT
T ss_pred CEEEEEcCCCCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCcHHHHHhh
Confidence 36999999999999998876 468999999999999999999877653 8999987777653 4
Q ss_pred CCCCeeEEEEcccc-cc--------ccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ESDSYSAYTIAFGI-RN--------VTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ~~~~~D~i~~~~~l-~~--------~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
..++||+|+++... +. ..+....+.++.+.|||||+++++.+..+
T Consensus 86 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 139 (185)
T 3mti_A 86 VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYGH 139 (185)
T ss_dssp CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC---
T ss_pred ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCCC
Confidence 46789999887432 21 13456788999999999999999877644
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-18 Score=118.00 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=87.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++. . ++.+...|+..+++
T Consensus 59 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~---~-------~~~~~~~d~~~~~~- 114 (279)
T 3ccf_A 59 EFILDLGCGTGQLTEKIAQS-------------GAEVLGTDNAATMIEKARQNY---P-------HLHFDVADARNFRV- 114 (279)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHC---T-------TSCEEECCTTTCCC-
T ss_pred CEEEEecCCCCHHHHHHHhC-------------CCeEEEEECCHHHHHHHHhhC---C-------CCEEEECChhhCCc-
Confidence 36999999999999988872 579999999999999998775 1 78899999988876
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++..++++++++..++.++.+.|+|||++++.....
T Consensus 115 ~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 115 DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 4789999999999999999999999999999999999876543
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.3e-19 Score=120.66 Aligned_cols=107 Identities=16% Similarity=0.181 Sum_probs=85.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC--------------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-------------------- 61 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-------------------- 61 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.|++++.......
T Consensus 49 ~VLDiGCG~G~~~~~la~~~~-----------~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (292)
T 3g07_A 49 DVLDLGCNVGHLTLSIACKWG-----------PSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGT 117 (292)
T ss_dssp EEEEESCTTCHHHHHHHHHTC-----------CSEEEEEESCHHHHHHHHHTC---------------------------
T ss_pred cEEEeCCCCCHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccc
Confidence 699999999999999999865 5799999999999999998866432110
Q ss_pred ---------------------------------CCCCceeEEecccccCC-----CCCCCeeEEEEcccccccc------
Q psy890 62 ---------------------------------VPNPRLRFLEANAEELP-----IESDSYSAYTIAFGIRNVT------ 97 (131)
Q Consensus 62 ---------------------------------~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~l~~~~------ 97 (131)
....+++++..|+.... +..++||+|++..+++|+.
T Consensus 118 ~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 118 TTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred ccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 00027999999987543 4568899999999987764
Q ss_pred CHHHHHHHHHHhccCCcEEEEE
Q psy890 98 RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 98 ~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++.+++.+++++|+|||++++.
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil~ 219 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVLE 219 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEEe
Confidence 7789999999999999999874
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.5e-18 Score=115.33 Aligned_cols=101 Identities=18% Similarity=0.208 Sum_probs=88.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++. + ..+++++|+|+.+++.++++... .++.++..|+...+++
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~-~-----------~~~v~~vD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~ 104 (243)
T 3bkw_A 45 LRIVDLGCGFGWFCRWAHEH-G-----------ASYVLGLDLSEKMLARARAAGPD--------TGITYERADLDKLHLP 104 (243)
T ss_dssp CEEEEETCTTCHHHHHHHHT-T-----------CSEEEEEESCHHHHHHHHHTSCS--------SSEEEEECCGGGCCCC
T ss_pred CEEEEEcCcCCHHHHHHHHC-C-----------CCeEEEEcCCHHHHHHHHHhccc--------CCceEEEcChhhccCC
Confidence 36999999999999888775 1 23899999999999999887643 1689999999888777
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++..++++++++...+.++.+.|+|||++++...
T Consensus 105 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 145 (243)
T 3bkw_A 105 QDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTE 145 (243)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeC
Confidence 78999999999999999999999999999999999998764
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=114.08 Aligned_cols=102 Identities=21% Similarity=0.307 Sum_probs=88.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+ .+++++..|+.+.+++.
T Consensus 41 ~vLDlG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~~ 101 (227)
T 1ve3_A 41 KVLDLACGVGGFSFLLEDY-------------GFEVVGVDISEDMIRKAREYAKSRE------SNVEFIVGDARKLSFED 101 (227)
T ss_dssp EEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCTTSCCSCT
T ss_pred eEEEEeccCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHhcC------CCceEEECchhcCCCCC
Confidence 6999999999999888775 3489999999999999999887654 17999999998877777
Q ss_pred CCeeEEEEccc--cccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFG--IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~--l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..+ +++.++...++.++.+.|+|||++++.+..
T Consensus 102 ~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 102 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 89999999988 555667889999999999999999987664
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-19 Score=119.44 Aligned_cols=99 Identities=16% Similarity=0.223 Sum_probs=87.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. +++++..|+.+++++
T Consensus 36 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~~~ 91 (261)
T 3ege_A 36 SVIADIGAGTGGYSVALANQ-------------GLFVYAVEPSIVMRQQAVVHP-----------QVEWFTGYAENLALP 91 (261)
T ss_dssp CEEEEETCTTSHHHHHHHTT-------------TCEEEEECSCHHHHHSSCCCT-----------TEEEECCCTTSCCSC
T ss_pred CEEEEEcCcccHHHHHHHhC-------------CCEEEEEeCCHHHHHHHHhcc-----------CCEEEECchhhCCCC
Confidence 36999999999999988862 579999999998888765433 689999999998888
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++..++++++++..++.++.+.|| ||++++.++...
T Consensus 92 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~ 134 (261)
T 3ege_A 92 DKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIR 134 (261)
T ss_dssp TTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGG
T ss_pred CCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCc
Confidence 8899999999999999999999999999999 999888887653
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=113.08 Aligned_cols=98 Identities=27% Similarity=0.335 Sum_probs=86.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+ + ..+++++|+|+.+++.++++. . ++.++..|+.+++++
T Consensus 38 ~~vLdiG~G~G~~~~~l----~-----------~~~v~~vD~s~~~~~~a~~~~---~-------~~~~~~~d~~~~~~~ 92 (211)
T 2gs9_A 38 ESLLEVGAGTGYWLRRL----P-----------YPQKVGVEPSEAMLAVGRRRA---P-------EATWVRAWGEALPFP 92 (211)
T ss_dssp SEEEEETCTTCHHHHHC----C-----------CSEEEEECCCHHHHHHHHHHC---T-------TSEEECCCTTSCCSC
T ss_pred CeEEEECCCCCHhHHhC----C-----------CCeEEEEeCCHHHHHHHHHhC---C-------CcEEEEcccccCCCC
Confidence 36999999999987766 2 348999999999999998886 1 788999999888887
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++..++++++++...+.++.++|+|||++++.....
T Consensus 93 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 135 (211)
T 2gs9_A 93 GESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEA 135 (211)
T ss_dssp SSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred CCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 8899999999999999999999999999999999999987654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.4e-18 Score=117.47 Aligned_cols=106 Identities=11% Similarity=0.052 Sum_probs=92.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++.. +.+++++|+|+.+++.++++....+..+ ++.+...|+.+++
T Consensus 92 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~-- 153 (318)
T 2fk8_A 92 MTLLDIGCGWGTTMRRAVERF------------DVNVIGLTLSKNQHARCEQVLASIDTNR----SRQVLLQGWEDFA-- 153 (318)
T ss_dssp CEEEEESCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTSCCSS----CEEEEESCGGGCC--
T ss_pred CEEEEEcccchHHHHHHHHHC------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEECChHHCC--
Confidence 369999999999999998875 3589999999999999999988766553 7999999988764
Q ss_pred CCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++..+++++ +++..++.++.++|+|||++++.+.....
T Consensus 154 -~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 154 -EPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp -CCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred -CCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 689999999999999 68899999999999999999998776543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-18 Score=120.06 Aligned_cols=107 Identities=15% Similarity=0.115 Sum_probs=92.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...+..+ +++++..|+.+. ++
T Consensus 182 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 245 (363)
T 3dp7_A 182 RLLDIGGNTGKWATQCVQYNK-----------EVEVTIVDL-PQQLEMMRKQTAGLSGSE----RIHGHGANLLDRDVPF 245 (363)
T ss_dssp EEEEESCTTCHHHHHHHHHST-----------TCEEEEEEC-HHHHHHHHHHHTTCTTGG----GEEEEECCCCSSSCCC
T ss_pred EEEEeCCCcCHHHHHHHHhCC-----------CCEEEEEeC-HHHHHHHHHHHHhcCccc----ceEEEEccccccCCCC
Confidence 689999999999999999864 679999999 999999999988766543 899999998875 35
Q ss_pred CCCCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 ESDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+ ++||+|++.+++|++++. ..++.++++.|+|||++++.|...+.
T Consensus 246 p-~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (363)
T 3dp7_A 246 P-TGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDR 292 (363)
T ss_dssp C-CCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTS
T ss_pred C-CCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCC
Confidence 5 789999999999988754 57899999999999999999876544
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=4.3e-18 Score=118.27 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=91.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...+..+ ++++...|+. .+.+.
T Consensus 172 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~-~~~p~ 234 (332)
T 3i53_A 172 HVVDVGGGSGGLLSALLTAHE-----------DLSGTVLDL-QGPASAAHRRFLDTGLSG----RAQVVVGSFF-DPLPA 234 (332)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHHHHHHHHHHTTCTT----TEEEEECCTT-SCCCC
T ss_pred EEEEeCCChhHHHHHHHHHCC-----------CCeEEEecC-HHHHHHHHHhhhhcCcCc----CeEEecCCCC-CCCCC
Confidence 699999999999999998865 678999999 999999999988776554 8999999986 34444
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+||+|++.+++|++++. .+++.++++.|+|||++++.|...+.
T Consensus 235 -~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 235 -GAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred -CCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 79999999999999874 78999999999999999999876544
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=112.53 Aligned_cols=97 Identities=23% Similarity=0.152 Sum_probs=84.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.++..++++. ++.+...|+...+ ..
T Consensus 46 ~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~d~~~~~-~~ 100 (211)
T 3e23_A 46 KILELGCGAGYQAEAMLAA-------------GFDVDATDGSPELAAEASRRL-----------GRPVRTMLFHQLD-AI 100 (211)
T ss_dssp EEEESSCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHH-----------TSCCEECCGGGCC-CC
T ss_pred cEEEECCCCCHHHHHHHHc-------------CCeEEEECCCHHHHHHHHHhc-----------CCceEEeeeccCC-CC
Confidence 6999999999999988875 468999999999999999886 3456778888777 67
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++ ++..++.++.+.|+|||++++.....
T Consensus 101 ~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 101 DAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp SCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred CcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 8899999999999998 78899999999999999999875443
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.9e-18 Score=116.97 Aligned_cols=105 Identities=17% Similarity=0.183 Sum_probs=89.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|..+..+++. +..+++++|+|+.+++.++++....+... ++.++..|+.+.++ .
T Consensus 67 ~vLDiGcG~G~~~~~l~~~------------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 130 (298)
T 1ri5_A 67 SVLDLGCGKGGDLLKYERA------------GIGEYYGVDIAEVSINDARVRARNMKRRF----KVFFRAQDSYGRHMDL 130 (298)
T ss_dssp EEEEETCTTTTTHHHHHHH------------TCSEEEEEESCHHHHHHHHHHHHTSCCSS----EEEEEESCTTTSCCCC
T ss_pred eEEEECCCCCHHHHHHHHC------------CCCEEEEEECCHHHHHHHHHHHHhcCCCc----cEEEEECCccccccCC
Confidence 6999999999998887765 24589999999999999999988765433 78999999988876 5
Q ss_pred CCCeeEEEEcccccc----ccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRN----VTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~----~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++ ..+...++.++.++|+|||++++....
T Consensus 131 ~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 176 (298)
T 1ri5_A 131 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPS 176 (298)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred CCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 678999999999876 457789999999999999999987654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=112.91 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=89.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++..... ++.+...|+.+.+++
T Consensus 44 ~~vLdiGcG~G~~~~~l~~~~------------~~~v~~~D~s~~~~~~a~~~~~~~~-------~i~~~~~d~~~~~~~ 104 (215)
T 2pxx_A 44 DRILVLGCGNSALSYELFLGG------------FPNVTSVDYSSVVVAAMQACYAHVP-------QLRWETMDVRKLDFP 104 (215)
T ss_dssp CCEEEETCTTCSHHHHHHHTT------------CCCEEEEESCHHHHHHHHHHTTTCT-------TCEEEECCTTSCCSC
T ss_pred CeEEEECCCCcHHHHHHHHcC------------CCcEEEEeCCHHHHHHHHHhcccCC-------CcEEEEcchhcCCCC
Confidence 369999999999999888762 2389999999999999999876422 799999999888777
Q ss_pred CCCeeEEEEcccccccc---------------CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVT---------------RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~---------------~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++..+++++. +...++.++.++|+|||++++.++..+
T Consensus 105 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 163 (215)
T 2pxx_A 105 SASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAP 163 (215)
T ss_dssp SSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred CCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence 78999999988876543 568899999999999999999887654
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=110.82 Aligned_cols=109 Identities=16% Similarity=0.116 Sum_probs=89.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
.+|||+|||+|.++..+++..+ +..+++++|+++.+++.+++++...+..+ +++++..|+.+.+ .
T Consensus 24 ~~vLDlGcG~G~~~~~l~~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~ 89 (197)
T 3eey_A 24 DTVVDATCGNGNDTAFLASLVG----------ENGRVFGFDIQDKAIANTTKKLTDLNLID----RVTLIKDGHQNMDKY 89 (197)
T ss_dssp CEEEESCCTTSHHHHHHHHHHC----------TTCEEEEECSCHHHHHHHHHHHHHTTCGG----GEEEECSCGGGGGGT
T ss_pred CEEEEcCCCCCHHHHHHHHHhC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----CeEEEECCHHHHhhh
Confidence 3699999999999999998864 25699999999999999999998866533 8999999988775 5
Q ss_pred CCCCeeEEEEcccccc---------ccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ESDSYSAYTIAFGIRN---------VTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~---------~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..++||+|++...+.. ..+...++.++.++|+|||++++..+..
T Consensus 90 ~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~ 142 (197)
T 3eey_A 90 IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYG 142 (197)
T ss_dssp CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCB
T ss_pred ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccC
Confidence 5678999998765411 1134679999999999999999987654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-18 Score=118.04 Aligned_cols=106 Identities=19% Similarity=0.131 Sum_probs=87.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++........ ...++.+...|+..++
T Consensus 60 ~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~ 125 (293)
T 3thr_A 60 RVLDVACGTGVDSIMLVEE-------------GFSVTSVDASDKMLKYALKERWNRRKEP-AFDKWVIEEANWLTLDKDV 125 (293)
T ss_dssp EEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTTSH-HHHTCEEEECCGGGHHHHS
T ss_pred EEEEecCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHhhhhccccc-ccceeeEeecChhhCcccc
Confidence 6999999999999988876 4599999999999999988763321110 0015788888988776
Q ss_pred CCCCCeeEEEEc-cccccccC-------HHHHHHHHHHhccCCcEEEEEec
Q psy890 79 IESDSYSAYTIA-FGIRNVTR-------IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ~~~~~~D~i~~~-~~l~~~~~-------~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+..++||+|++. .+++++++ +..++.++.+.|+|||++++...
T Consensus 126 ~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 126 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 677899999998 89999998 89999999999999999988654
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=115.65 Aligned_cols=111 Identities=16% Similarity=0.034 Sum_probs=92.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHH------HHHHHHHHhhhccCCCCCCCceeEEecc-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA------MLDVGEQRARDLFKVPVPNPRLRFLEAN- 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~d- 73 (131)
.+|||+|||+|.++..+++..+ +..+++++|+|+. +++.+++++...+..+ +++++..|
T Consensus 45 ~~vLDiGcG~G~~~~~l~~~~g----------~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~ 110 (275)
T 3bkx_A 45 EKILEIGCGQGDLSAVLADQVG----------SSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGD----RLTVHFNTN 110 (275)
T ss_dssp CEEEEESCTTSHHHHHHHHHHC----------TTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGG----GEEEECSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEECCccccccHHHHHHHHHHHHhcCCCC----ceEEEECCh
Confidence 3699999999999999998863 2478999999997 9999999988765543 79999998
Q ss_pred --cccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 74 --AEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 74 --~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
....+++.++||+|++..+++++++...++..+.++++|||++++.++..+.
T Consensus 111 ~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~ 164 (275)
T 3bkx_A 111 LSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQP 164 (275)
T ss_dssp TTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSC
T ss_pred hhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCC
Confidence 3444566789999999999999999988777777777889999998877643
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=6.2e-18 Score=115.43 Aligned_cols=101 Identities=11% Similarity=0.107 Sum_probs=85.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..++.... +.+|+++|+|+++++.|+++++..+. + +++++.+|+.+++
T Consensus 124 ~rVLDIGcG~G~~ta~~lA~~~-----------ga~V~gIDis~~~l~~Ar~~~~~~gl-~----~v~~v~gDa~~l~-- 185 (298)
T 3fpf_A 124 ERAVFIGGGPLPLTGILLSHVY-----------GMRVNVVEIEPDIAELSRKVIEGLGV-D----GVNVITGDETVID-- 185 (298)
T ss_dssp CEEEEECCCSSCHHHHHHHHTT-----------CCEEEEEESSHHHHHHHHHHHHHHTC-C----SEEEEESCGGGGG--
T ss_pred CEEEEECCCccHHHHHHHHHcc-----------CCEEEEEECCHHHHHHHHHHHHhcCC-C----CeEEEECchhhCC--
Confidence 4799999999988766555433 67999999999999999999988776 3 8999999998865
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++... .++..+++.++.+.|||||++++.+..
T Consensus 186 d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv~~~~ 224 (298)
T 3fpf_A 186 GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIYRTYT 224 (298)
T ss_dssp GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEEEECC
T ss_pred CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEEEcCc
Confidence 678999998654 578899999999999999999987643
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.77 E-value=7e-18 Score=114.85 Aligned_cols=101 Identities=12% Similarity=0.017 Sum_probs=88.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+. +++++..|+...+. .
T Consensus 123 ~vLD~GcG~G~~~~~l~~~-------------g~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~-~ 182 (286)
T 3m70_A 123 KVLDLGCGQGRNSLYLSLL-------------GYDVTSWDHNENSIAFLNETKEKENL------NISTALYDINAANI-Q 182 (286)
T ss_dssp EEEEESCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTC------CEEEEECCGGGCCC-C
T ss_pred cEEEECCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHHcCC------ceEEEEeccccccc-c
Confidence 6999999999999988876 45899999999999999999887653 68999999988766 6
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++ +...++.++.+.|+|||+++++...
T Consensus 183 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 225 (286)
T 3m70_A 183 ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAM 225 (286)
T ss_dssp SCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred CCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 7899999999999885 4679999999999999998776543
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-18 Score=110.51 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=87.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+. ++.+...|+...+++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~ 92 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL-------------GYEVTAVDQSSVGLAKAKQLAQEKGV------KITTVQSNLADFDIVA 92 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT-------------TCEEEEECSSHHHHHHHHHHHHHHTC------CEEEECCBTTTBSCCT
T ss_pred CEEEECCCCCHhHHHHHhC-------------CCeEEEEECCHHHHHHHHHHHHhcCC------ceEEEEcChhhcCCCc
Confidence 5899999999999888775 45899999999999999999876542 6899999998887777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++.+......+....+.++.+.|+|||++++..+...
T Consensus 93 ~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 135 (202)
T 2kw5_A 93 DAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPE 135 (202)
T ss_dssp TTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTT
T ss_pred CCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccc
Confidence 8999999965433234778999999999999999999876644
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-19 Score=116.71 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=83.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....+ .++.++..|+.+. ++
T Consensus 63 ~vLDiGcGtG~~~~~l~~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~------~~v~~~~~d~~~~~~~~ 124 (236)
T 1zx0_A 63 RVLEVGFGMAIAASKVQEAP------------IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTL 124 (236)
T ss_dssp EEEEECCTTSHHHHHHHTSC------------EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGS
T ss_pred eEEEEeccCCHHHHHHHhcC------------CCeEEEEcCCHHHHHHHHHHHHhcC------CCeEEEecCHHHhhccc
Confidence 69999999999998886541 3489999999999999999887654 2799999998887 77
Q ss_pred CCCCeeEEEE-cccc--cc--ccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTI-AFGI--RN--VTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~-~~~l--~~--~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++++||+|++ .+.+ +. ..++..++.+++++|||||++++.++.
T Consensus 125 ~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred CCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 8889999999 5554 11 123457799999999999999987654
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-17 Score=117.73 Aligned_cols=106 Identities=13% Similarity=0.057 Sum_probs=92.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...++.+ ++++...|+. .+.+.
T Consensus 205 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~l~~----~v~~~~~d~~-~~~p~ 267 (369)
T 3gwz_A 205 TAVDIGGGRGSLMAAVLDAFP-----------GLRGTLLER-PPVAEEARELLTGRGLAD----RCEILPGDFF-ETIPD 267 (369)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHHHHHHHHHHTTCTT----TEEEEECCTT-TCCCS
T ss_pred EEEEeCCCccHHHHHHHHHCC-----------CCeEEEEcC-HHHHHHHHHhhhhcCcCC----ceEEeccCCC-CCCCC
Confidence 699999999999999998864 678999999 999999999988776554 8999999987 34444
Q ss_pred CCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.||+|++.+++|++++.. +++.++++.|+|||++++.|...+.
T Consensus 268 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 268 -GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp -SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred -CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 799999999999998765 7999999999999999999877654
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-18 Score=115.01 Aligned_cols=104 Identities=9% Similarity=0.112 Sum_probs=88.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+|+.+++.++++... .+++++..|+.+.+..
T Consensus 58 ~~vLD~GcG~G~~~~~la~~-------------~~~v~gvD~s~~~~~~a~~~~~~--------~~~~~~~~d~~~~~~~ 116 (245)
T 3ggd_A 58 LPLIDFACGNGTQTKFLSQF-------------FPRVIGLDVSKSALEIAAKENTA--------ANISYRLLDGLVPEQA 116 (245)
T ss_dssp SCEEEETCTTSHHHHHHHHH-------------SSCEEEEESCHHHHHHHHHHSCC--------TTEEEEECCTTCHHHH
T ss_pred CeEEEEcCCCCHHHHHHHHh-------------CCCEEEEECCHHHHHHHHHhCcc--------cCceEEECcccccccc
Confidence 36999999999999999886 34899999999999999988732 2799999998875432
Q ss_pred C-----CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 S-----DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~-----~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
. ..||+|++..++++++ +...++.++.+.|||||++++.++..+.
T Consensus 117 ~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 117 AQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp HHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred cccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 1 3499999999999998 8899999999999999999999887543
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-18 Score=112.76 Aligned_cols=103 Identities=14% Similarity=-0.023 Sum_probs=86.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
.|||+|||+|..+..+++..+ ..+++|+|+|+.++..++++....+.. +++++..|+.+. +
T Consensus 37 ~vLDiGcG~G~~~~~lA~~~p-----------~~~v~giD~s~~~l~~a~~~~~~~~l~-----nv~~~~~Da~~~l~~~ 100 (218)
T 3dxy_A 37 VTLEIGFGMGASLVAMAKDRP-----------EQDFLGIEVHSPGVGACLASAHEEGLS-----NLRVMCHDAVEVLHKM 100 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCT-----------TSEEEEECSCHHHHHHHHHHHHHTTCS-----SEEEECSCHHHHHHHH
T ss_pred eEEEEeeeChHHHHHHHHHCC-----------CCeEEEEEecHHHHHHHHHHHHHhCCC-----cEEEEECCHHHHHHHH
Confidence 689999999999999988754 678999999999999999998877654 799999998774 3
Q ss_pred CCCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++.++||.|++.+...+.... ..++.++.+.|||||++++..
T Consensus 101 ~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 101 IPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp SCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 677899999998665544322 258999999999999998864
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.1e-18 Score=114.68 Aligned_cols=96 Identities=17% Similarity=0.213 Sum_probs=83.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. ++.++..|+.+.+. .
T Consensus 53 ~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~-~ 108 (263)
T 3pfg_A 53 SLLDVACGTGMHLRHLADS-------------FGTVEGLELSADMLAIARRRNP----------DAVLHHGDMRDFSL-G 108 (263)
T ss_dssp EEEEETCTTSHHHHHHTTT-------------SSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTCCC-S
T ss_pred cEEEeCCcCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHhhCC----------CCEEEECChHHCCc-c
Confidence 6999999999999988775 4589999999999999988753 68899999988776 6
Q ss_pred CCeeEEEEcc-cccccc---CHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAF-GIRNVT---RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~-~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
++||+|++.. ++++++ +...++.++.++|+|||++++..+
T Consensus 109 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~ 152 (263)
T 3pfg_A 109 RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVEPW 152 (263)
T ss_dssp CCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred CCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 7899999998 899885 667889999999999999988644
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=111.98 Aligned_cols=99 Identities=17% Similarity=0.185 Sum_probs=86.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+. ++.++..|+.+.+++
T Consensus 40 ~vLdiG~G~G~~~~~l~~~-------------~~~~~~~D~s~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~- 99 (246)
T 1y8c_A 40 DYLDLACGTGNLTENLCPK-------------FKNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNLNIN- 99 (246)
T ss_dssp EEEEETCTTSTTHHHHGGG-------------SSEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGCCCS-
T ss_pred eEEEeCCCCCHHHHHHHHC-------------CCcEEEEECCHHHHHHHHHHHhhcCC------CeEEEecccccCCcc-
Confidence 6999999999999988876 46899999999999999998876542 688999999887766
Q ss_pred CCeeEEEEcc-ccccc---cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~-~l~~~---~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++.. +++++ ++...++.++.++|+|||++++..
T Consensus 100 ~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 142 (246)
T 1y8c_A 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred CCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 7899999998 99998 577899999999999999998743
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.7e-17 Score=108.78 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=86.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.++..++++....+.. ++.++..|+..++ +
T Consensus 44 ~vLDiGcG~G~~~~~la~~~p-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~ 107 (214)
T 1yzh_A 44 IHVEVGSGKGAFVSGMAKQNP-----------DINYIGIDIQKSVLSYALDKVLEVGVP-----NIKLLWVDGSDLTDYF 107 (214)
T ss_dssp EEEEESCTTSHHHHHHHHHCT-----------TSEEEEEESCHHHHHHHHHHHHHHCCS-----SEEEEECCSSCGGGTS
T ss_pred eEEEEccCcCHHHHHHHHHCC-----------CCCEEEEEcCHHHHHHHHHHHHHcCCC-----CEEEEeCCHHHHHhhc
Confidence 589999999999999988754 679999999999999999998877653 8999999988865 6
Q ss_pred CCCCeeEEEEcccccccc--------CHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVT--------RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~--------~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.++||+|++++...+.. ....++.++.+.|+|||++++..
T Consensus 108 ~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 156 (214)
T 1yzh_A 108 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 156 (214)
T ss_dssp CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred CCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence 677899999987654433 12678999999999999998854
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=116.16 Aligned_cols=109 Identities=10% Similarity=0.120 Sum_probs=80.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCC-CCCceeEEeccc------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV-PNPRLRFLEANA------ 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~------ 74 (131)
+|||+|||+|..+..++.. ...+|+|+|+|+.|++.|+++....+.... +..++.+...|+
T Consensus 51 ~VLDlGCG~G~~l~~~~~~------------~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~ 118 (302)
T 2vdw_A 51 KVLAIDFGNGADLEKYFYG------------EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFV 118 (302)
T ss_dssp EEEETTCTTTTTHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHH
T ss_pred eEEEEecCCcHhHHHHHhc------------CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhh
Confidence 6999999999766655443 246899999999999999998865432100 000256777776
Q ss_pred ccC--CCCCCCeeEEEEccccccc---cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 75 EEL--PIESDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 75 ~~~--~~~~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++ +++.++||+|+|.+++|++ .+...++.++.++|||||++++....
T Consensus 119 ~~l~~~~~~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~ 171 (302)
T 2vdw_A 119 SSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMD 171 (302)
T ss_dssp HHHHTTCCSSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred hhhhccccCCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 222 2455789999999999865 35689999999999999999887654
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-17 Score=107.06 Aligned_cols=102 Identities=12% Similarity=0.029 Sum_probs=86.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++....+.. +++++..|+.+.....
T Consensus 43 ~vLDiG~G~G~~~~~la~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~ 106 (204)
T 3e05_A 43 VMWDIGAGSASVSIEASNLMP-----------NGRIFALERNPQYLGFIRDNLKKFVAR-----NVTLVEAFAPEGLDDL 106 (204)
T ss_dssp EEEEETCTTCHHHHHHHHHCT-----------TSEEEEEECCHHHHHHHHHHHHHHTCT-----TEEEEECCTTTTCTTS
T ss_pred EEEEECCCCCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHhCCC-----cEEEEeCChhhhhhcC
Confidence 699999999999999988743 579999999999999999998877653 8999999986643333
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+||+|++...++ +...++.++.+.|+|||++++....
T Consensus 107 ~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 107 PDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred CCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 6799999987665 7889999999999999999987654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5e-18 Score=112.92 Aligned_cols=97 Identities=15% Similarity=0.114 Sum_probs=82.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++ +.++..|..+. +
T Consensus 43 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~-------------~~~~~~d~~~~~~~ 96 (240)
T 3dli_A 43 RRVLDIGCGRGEFLELCKEE-------------GIESIGVDINEDMIKFCEGK-------------FNVVKSDAIEYLKS 96 (240)
T ss_dssp SCEEEETCTTTHHHHHHHHH-------------TCCEEEECSCHHHHHHHHTT-------------SEEECSCHHHHHHT
T ss_pred CeEEEEeCCCCHHHHHHHhC-------------CCcEEEEECCHHHHHHHHhh-------------cceeeccHHHHhhh
Confidence 36999999999999888775 45799999999999988754 45677787664 6
Q ss_pred CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++.++||+|++..++++++ +...++.++.+.|||||++++.....
T Consensus 97 ~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 143 (240)
T 3dli_A 97 LPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIESPNP 143 (240)
T ss_dssp SCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECT
T ss_pred cCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 7778999999999999998 55999999999999999999876553
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-17 Score=109.93 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=85.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.|||+|||+|.++..+++..+ ..+++++|+|+.++..++++....+.. ++.++..|+..++ +
T Consensus 41 ~vLDiGcG~G~~~~~la~~~p-----------~~~v~giD~s~~~l~~a~~~~~~~~~~-----nv~~~~~d~~~l~~~~ 104 (213)
T 2fca_A 41 IHIEVGTGKGQFISGMAKQNP-----------DINYIGIELFKSVIVTAVQKVKDSEAQ-----NVKLLNIDADTLTDVF 104 (213)
T ss_dssp EEEEECCTTSHHHHHHHHHCT-----------TSEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEECCCGGGHHHHC
T ss_pred eEEEEecCCCHHHHHHHHHCC-----------CCCEEEEEechHHHHHHHHHHHHcCCC-----CEEEEeCCHHHHHhhc
Confidence 589999999999999988754 679999999999999999998876653 7999999988764 6
Q ss_pred CCCCeeEEEEccccccccC--------HHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.++||.|++.+...+... ...++.++.++|+|||.+++..
T Consensus 105 ~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 105 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 6778999988765443321 3678999999999999998864
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-18 Score=117.06 Aligned_cols=107 Identities=14% Similarity=0.140 Sum_probs=92.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|++ .+++.+++++...+..+ +++++..|+.+.+++.
T Consensus 168 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~~-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 231 (335)
T 2r3s_A 168 KVLDISASHGLFGIAVAQHNP-----------NAEIFGVDWA-SVLEVAKENARIQGVAS----RYHTIAGSAFEVDYGN 231 (335)
T ss_dssp EEEEETCTTCHHHHHHHHHCT-----------TCEEEEEECH-HHHHHHHHHHHHHTCGG----GEEEEESCTTTSCCCS
T ss_pred EEEEECCCcCHHHHHHHHHCC-----------CCeEEEEecH-HHHHHHHHHHHhcCCCc----ceEEEecccccCCCCC
Confidence 689999999999999988864 5799999999 99999999987766543 7999999988766554
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.||+|++.+++|+++ +...++.++.+.|+|||++++.+...+.
T Consensus 232 -~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 276 (335)
T 2r3s_A 232 -DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNS 276 (335)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCT
T ss_pred -CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCC
Confidence 499999999999995 4579999999999999999999877654
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=107.19 Aligned_cols=104 Identities=10% Similarity=-0.021 Sum_probs=87.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+.. +++++..|+.+.. +
T Consensus 47 ~vLDlgcG~G~~~~~~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~ 109 (189)
T 3p9n_A 47 AVLDLYAGSGALGLEALSR------------GAASVLFVESDQRSAAVIARNIEALGLS-----GATLRRGAVAAVVAAG 109 (189)
T ss_dssp EEEEETCTTCHHHHHHHHT------------TCSEEEEEECCHHHHHHHHHHHHHHTCS-----CEEEEESCHHHHHHHC
T ss_pred EEEEeCCCcCHHHHHHHHC------------CCCeEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEccHHHHHhhc
Confidence 6899999999999877664 2568999999999999999999887653 8999999987753 3
Q ss_pred CCCCeeEEEEccccccc-cCHHHHHHHHHH--hccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNV-TRIDKALSEAYR--VLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~-~~~~~~l~~~~~--~L~p~G~l~~~~~~ 122 (131)
+.++||+|++....++. ++....+..+.+ +|+|||++++....
T Consensus 110 ~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 110 TTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp CSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred cCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 46789999998877664 678899999999 99999999886544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-17 Score=112.42 Aligned_cols=104 Identities=13% Similarity=0.066 Sum_probs=86.9
Q ss_pred ceeeeeccc---chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 2 YILFYLVFP---GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~---G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
.|||+|||+ |.++..+.+..+ ..+++++|+|+.|+..+++++.... +++++.+|+.+..
T Consensus 80 ~vLDlGcG~pt~G~~~~~~~~~~p-----------~~~v~~vD~sp~~l~~Ar~~~~~~~-------~v~~~~~D~~~~~ 141 (274)
T 2qe6_A 80 QFLDLGSGLPTVQNTHEVAQSVNP-----------DARVVYVDIDPMVLTHGRALLAKDP-------NTAVFTADVRDPE 141 (274)
T ss_dssp EEEEETCCSCCSSCHHHHHHHHCT-----------TCEEEEEESSHHHHHHHHHHHTTCT-------TEEEEECCTTCHH
T ss_pred EEEEECCCCCCCChHHHHHHHhCC-----------CCEEEEEECChHHHHHHHHhcCCCC-------CeEEEEeeCCCch
Confidence 689999999 988766655543 6799999999999999999885432 8999999986531
Q ss_pred -----------CCCCCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -----------IESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -----------~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++.++||+|++..++|++++ ...++.++.+.|+|||++++.+...
T Consensus 142 ~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 142 YILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp HHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred hhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 23357999999999999986 8899999999999999999988765
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-17 Score=115.70 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=92.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...+..+ +++++..|+.+.+++.
T Consensus 193 ~vLDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 256 (359)
T 1x19_A 193 KMIDVGGGIGDISAAMLKHFP-----------ELDSTILNL-PGAIDLVNENAAEKGVAD----RMRGIAVDIYKESYPE 256 (359)
T ss_dssp EEEEESCTTCHHHHHHHHHCT-----------TCEEEEEEC-GGGHHHHHHHHHHTTCTT----TEEEEECCTTTSCCCC
T ss_pred EEEEECCcccHHHHHHHHHCC-----------CCeEEEEec-HHHHHHHHHHHHhcCCCC----CEEEEeCccccCCCCC
Confidence 699999999999999998864 679999999 999999999988766553 7999999998776543
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+|+|++.+++|++++ ...++.++++.|+|||++++.+...+.
T Consensus 257 --~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 257 --ADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp --CSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred --CCEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 399999999999987 789999999999999999999866543
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=110.84 Aligned_cols=99 Identities=20% Similarity=0.142 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|||+|||+|..+..++...+ ..+++++|+|+.+++.++++....+.. +++++..|+.++++.
T Consensus 73 ~vLDiG~G~G~~~~~la~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~~ 136 (240)
T 1xdz_A 73 TICDVGAGAGFPSLPIKICFP-----------HLHVTIVDSLNKRITFLEKLSEALQLE-----NTTFCHDRAETFGQRK 136 (240)
T ss_dssp EEEEECSSSCTTHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEESCHHHHTTCT
T ss_pred EEEEecCCCCHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEeccHHHhcccc
Confidence 689999999999998887533 678999999999999999998877654 799999998877643
Q ss_pred --CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 --SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 --~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|++.. +.++..++..+.++|+|||++++..
T Consensus 137 ~~~~~fD~V~~~~----~~~~~~~l~~~~~~LkpgG~l~~~~ 174 (240)
T 1xdz_A 137 DVRESYDIVTARA----VARLSVLSELCLPLVKKNGLFVALK 174 (240)
T ss_dssp TTTTCEEEEEEEC----CSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cccCCccEEEEec----cCCHHHHHHHHHHhcCCCCEEEEEe
Confidence 57899999865 4678899999999999999998864
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.74 E-value=5.3e-18 Score=114.45 Aligned_cols=109 Identities=12% Similarity=0.037 Sum_probs=80.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCC--------------C----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPV--------------P---- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~--------------~---- 63 (131)
+|||+|||+|..+..++.. ...+|+++|+|+.|++.++++++.....-. .
T Consensus 58 ~vLDiGCG~G~~~~~~~~~------------~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~ 125 (263)
T 2a14_A 58 TLIDIGSGPTIYQVLAACD------------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWE 125 (263)
T ss_dssp EEEESSCTTCCGGGTTGGG------------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHH
T ss_pred eEEEeCCCccHHHHHHHHh------------hhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchh
Confidence 6999999999877655543 134799999999999999887643210000 0
Q ss_pred ------CCcee-EEecccccC-CC---CCCCeeEEEEccccccc----cCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 64 ------NPRLR-FLEANAEEL-PI---ESDSYSAYTIAFGIRNV----TRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 64 ------~~~~~-~~~~d~~~~-~~---~~~~~D~i~~~~~l~~~----~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..++. ++..|+.+. ++ ..++||+|++++++++. ++....+.+++++|||||++++....
T Consensus 126 ~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 126 EKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp HHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 00233 788887773 33 24689999999999875 45678999999999999999998644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.74 E-value=1e-17 Score=116.37 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=91.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++++...+..+ +++++..|+.+ +++
T Consensus 170 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~-~~~- 231 (334)
T 2ip2_A 170 SFVDVGGGSGELTKAILQAEP-----------SARGVMLDR-EGSLGVARDNLSSLLAGE----RVSLVGGDMLQ-EVP- 231 (334)
T ss_dssp EEEEETCTTCHHHHHHHHHCT-----------TCEEEEEEC-TTCTHHHHHHTHHHHHTT----SEEEEESCTTT-CCC-
T ss_pred EEEEeCCCchHHHHHHHHHCC-----------CCEEEEeCc-HHHHHHHHHHHhhcCCCC----cEEEecCCCCC-CCC-
Confidence 699999999999999998864 578999999 999999999887655443 89999999877 444
Q ss_pred CCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++.+++|++++.. .++.++++.|+|||++++.|...+.
T Consensus 232 ~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 277 (334)
T 2ip2_A 232 SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISA 277 (334)
T ss_dssp SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 6799999999999887655 9999999999999999999876543
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.5e-17 Score=114.02 Aligned_cols=105 Identities=17% Similarity=0.244 Sum_probs=87.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCC--CCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV--PVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.++++....+.. . +++++..|+.++++
T Consensus 85 ~vLDlGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~----~v~~~~~d~~~~~~ 147 (299)
T 3g2m_A 85 PVLELAAGMGRLTFPFLDL-------------GWEVTALELSTSVLAAFRKRLAEAPADVRD----RCTLVQGDMSAFAL 147 (299)
T ss_dssp CEEEETCTTTTTHHHHHTT-------------TCCEEEEESCHHHHHHHHHHHHTSCHHHHT----TEEEEECBTTBCCC
T ss_pred cEEEEeccCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHHHhhccccccc----ceEEEeCchhcCCc
Confidence 6999999999999988875 468999999999999999998765321 1 79999999998876
Q ss_pred CCCCeeEEEEc-ccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ESDSYSAYTIA-FGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ~~~~~D~i~~~-~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++. ..+++++ +...++.++.+.|+|||++++..+...
T Consensus 148 -~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 194 (299)
T 3g2m_A 148 -DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSE 194 (299)
T ss_dssp -SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCH
T ss_pred -CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCc
Confidence 6789999975 4456555 468999999999999999998766553
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=105.47 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=83.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 80 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++....+..+ ++ ++..|..+ ++..
T Consensus 28 ~vldiG~G~G~~~~~l~~~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~-~~~~d~~~~~~~~ 91 (178)
T 3hm2_A 28 TLWDIGGGSGSIAIEWLRSTP-----------QTTAVCFEISEERRERILSNAINLGVSD----RI-AVQQGAPRAFDDV 91 (178)
T ss_dssp EEEEESTTTTHHHHHHHTTSS-----------SEEEEEECSCHHHHHHHHHHHHTTTCTT----SE-EEECCTTGGGGGC
T ss_pred eEEEeCCCCCHHHHHHHHHCC-----------CCeEEEEeCCHHHHHHHHHHHHHhCCCC----CE-EEecchHhhhhcc
Confidence 689999999999999888753 6789999999999999999988776553 67 77777643 3332
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++...+++ ..++.++.+.|+|||++++.....
T Consensus 92 ~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~ 130 (178)
T 3hm2_A 92 PDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV 130 (178)
T ss_dssp CSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH
T ss_pred CCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc
Confidence 378999999988876 678899999999999999877554
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=112.12 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC--------------CC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP--------------VP---- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~--------------~~---- 63 (131)
+|||+|||+|.++..++... ..+++++|+|+.+++.++++........ ..
T Consensus 59 ~vLDlGcG~G~~~~~l~~~~------------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (265)
T 2i62_A 59 LLIDIGSGPTIYQLLSACES------------FTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGP 126 (265)
T ss_dssp EEEEESCTTCCGGGTTGGGT------------EEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHH
T ss_pred EEEEECCCccHHHHHHhhcc------------cCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchH
Confidence 68999999999988877641 2489999999999999998876432000 00
Q ss_pred ------CCce-eEEecccccCC-CCC---CCeeEEEEccccc----cccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 64 ------NPRL-RFLEANAEELP-IES---DSYSAYTIAFGIR----NVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 64 ------~~~~-~~~~~d~~~~~-~~~---~~~D~i~~~~~l~----~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..++ .+...|+.+.. .+. ++||+|++..+++ +.+++..++.++.++|+|||++++.+..
T Consensus 127 ~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 127 EKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp HHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred HHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 0027 88999988754 344 7899999999999 6667889999999999999999987743
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-17 Score=115.87 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=92.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.++++....+..+ +++++..|+.+.+ +.
T Consensus 182 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 245 (352)
T 3mcz_A 182 TVIDLAGGHGTYLAQVLRRHP-----------QLTGQIWDL-PTTRDAARKTIHAHDLGG----RVEFFEKNLLDARNFE 245 (352)
T ss_dssp EEEEETCTTCHHHHHHHHHCT-----------TCEEEEEEC-GGGHHHHHHHHHHTTCGG----GEEEEECCTTCGGGGT
T ss_pred EEEEeCCCcCHHHHHHHHhCC-----------CCeEEEEEC-HHHHHHHHHHHHhcCCCC----ceEEEeCCcccCcccC
Confidence 699999999999999998865 679999999 889999999888766543 7999999988765 23
Q ss_pred CCCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.+.||+|++.+++|++++. ..++.++++.|+|||++++.|...+.
T Consensus 246 ~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 246 GGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp TCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred CCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 4569999999999999864 79999999999999999999876544
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=109.52 Aligned_cols=98 Identities=16% Similarity=0.130 Sum_probs=83.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++ . ++.+...++.+.
T Consensus 54 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~----~-------~~~~~~~~~~~~~~~ 109 (227)
T 3e8s_A 54 ERVLDLGCGEGWLLRALADR-------------GIEAVGVDGDRTLVDAARAA----G-------AGEVHLASYAQLAEA 109 (227)
T ss_dssp SEEEEETCTTCHHHHHHHTT-------------TCEEEEEESCHHHHHHHHHT----C-------SSCEEECCHHHHHTT
T ss_pred CEEEEeCCCCCHHHHHHHHC-------------CCEEEEEcCCHHHHHHHHHh----c-------ccccchhhHHhhccc
Confidence 36999999999999888776 46899999999999999877 2 667777777665
Q ss_pred CCC-CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 78 PIE-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 78 ~~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+.. ..+||+|++..+++ ..++..++.++.++|+|||++++.+...
T Consensus 110 ~~~~~~~fD~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 155 (227)
T 3e8s_A 110 KVPVGKDYDLICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHP 155 (227)
T ss_dssp CSCCCCCEEEEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred ccccCCCccEEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCc
Confidence 433 34599999999999 8899999999999999999999987654
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-17 Score=113.55 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=86.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC--CCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP--VPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~~~~~- 78 (131)
+|||+|||+|..+..+++. ...+++++|+|+.+++.++++........ ....++.++..|+...+
T Consensus 37 ~VLDlGcG~G~~~~~l~~~------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 104 (313)
T 3bgv_A 37 TVLDLGCGKGGDLLKWKKG------------RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELL 104 (313)
T ss_dssp EEEEETCTTTTTHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCS
T ss_pred EEEEECCCCcHHHHHHHhc------------CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccch
Confidence 6999999999999888774 25689999999999999999876532000 00027899999988765
Q ss_pred ---CC--CCCeeEEEEccccccc-c---CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 ---IE--SDSYSAYTIAFGIRNV-T---RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ---~~--~~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++ .++||+|++.+++|+. . +....+.++.+.|+|||++++....
T Consensus 105 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 105 IDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp TTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred hhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 43 3589999999999987 3 4579999999999999999987654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.3e-17 Score=115.33 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=88.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...++.+ +++++..|+.+ +++.
T Consensus 185 ~vlDvG~G~G~~~~~l~~~~~-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~-~~~~ 247 (374)
T 1qzz_A 185 HVLDVGGGNGGMLAAIALRAP-----------HLRGTLVEL-AGPAERARRRFADAGLAD----RVTVAEGDFFK-PLPV 247 (374)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHHHHHHHHHHTTCTT----TEEEEECCTTS-CCSC
T ss_pred EEEEECCCcCHHHHHHHHHCC-----------CCEEEEEeC-HHHHHHHHHHHHhcCCCC----ceEEEeCCCCC-cCCC
Confidence 699999999999999998864 678999999 999999999988776554 89999999865 3333
Q ss_pred CCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.||+|++.+++|++++.. .++.++.+.|+|||++++.+.
T Consensus 248 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 248 -TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred -CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 499999999999998764 899999999999999999887
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=110.92 Aligned_cols=98 Identities=27% Similarity=0.294 Sum_probs=83.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++.. . + ++..|+.+++++
T Consensus 56 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~--~-------~--~~~~d~~~~~~~ 111 (260)
T 2avn_A 56 CRVLDLGGGTGKWSLFLQER-------------GFEVVLVDPSKEMLEVAREKGV--K-------N--VVEAKAEDLPFP 111 (260)
T ss_dssp CEEEEETCTTCHHHHHHHTT-------------TCEEEEEESCHHHHHHHHHHTC--S-------C--EEECCTTSCCSC
T ss_pred CeEEEeCCCcCHHHHHHHHc-------------CCeEEEEeCCHHHHHHHHhhcC--C-------C--EEECcHHHCCCC
Confidence 36999999999999988775 4689999999999999988754 1 3 778888888877
Q ss_pred CCCeeEEEEcccccc-ccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~-~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++...+.+ .+++..++.++.+.|+|||++++...+
T Consensus 112 ~~~fD~v~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 154 (260)
T 2avn_A 112 SGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDN 154 (260)
T ss_dssp TTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred CCCEEEEEEcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 889999999876544 478999999999999999999987654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=113.42 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=78.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-----------------CCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-----------------VPV-- 62 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-----------------~~~-- 62 (131)
+|||+|||+|..+..++.. . ..+|+++|+|+.|++.++++++.... ...
T Consensus 74 ~vLDiGcG~G~~~~l~~~~-~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 141 (289)
T 2g72_A 74 TLIDIGSGPTVYQLLSACS-H-----------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQ 141 (289)
T ss_dssp EEEEETCTTCCGGGTTGGG-G-----------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHH
T ss_pred eEEEECCCcChHHHHhhcc-C-----------CCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchh
Confidence 6999999999954433332 2 56899999999999999886542110 000
Q ss_pred ------CCCceeEEeccccc-CCC-----CCCCeeEEEEcccccc----ccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 63 ------PNPRLRFLEANAEE-LPI-----ESDSYSAYTIAFGIRN----VTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 63 ------~~~~~~~~~~d~~~-~~~-----~~~~~D~i~~~~~l~~----~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+...+.++..|+.. .++ +.++||+|++++++++ ++++..++.++.++|||||++++..
T Consensus 142 ~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 142 DKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 00014566778776 443 3467999999999999 6678999999999999999999875
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.4e-17 Score=104.07 Aligned_cols=105 Identities=18% Similarity=0.176 Sum_probs=87.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+... .+++++..|+.+. ...
T Consensus 55 ~vLdiG~G~G~~~~~~~~~-------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~---~~~~~~~~d~~~~-~~~ 117 (194)
T 1dus_A 55 DILDLGCGYGVIGIALADE-------------VKSTTMADINRRAIKLAKENIKLNNLDN---YDIRVVHSDLYEN-VKD 117 (194)
T ss_dssp EEEEETCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTCTT---SCEEEEECSTTTT-CTT
T ss_pred eEEEeCCCCCHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECchhcc-ccc
Confidence 6999999999999988876 4689999999999999999988765431 0289999998773 446
Q ss_pred CCeeEEEEcccccc-ccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRN-VTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~-~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++..+++ ..+....+.++.+.|+|||++++.....
T Consensus 118 ~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~ 160 (194)
T 1dus_A 118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQTK 160 (194)
T ss_dssp SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEEST
T ss_pred CCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 78999999888776 4567899999999999999999987664
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.4e-17 Score=109.21 Aligned_cols=99 Identities=14% Similarity=0.198 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.. .+++++|+|+.+++.++++.. ++.++..|+.+.+. .
T Consensus 43 ~vLdiG~G~G~~~~~l~~~~-------------~~v~~~D~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~-~ 98 (239)
T 3bxo_A 43 SLLDVACGTGTHLEHFTKEF-------------GDTAGLELSEDMLTHARKRLP----------DATLHQGDMRDFRL-G 98 (239)
T ss_dssp EEEEETCTTSHHHHHHHHHH-------------SEEEEEESCHHHHHHHHHHCT----------TCEEEECCTTTCCC-S
T ss_pred eEEEecccCCHHHHHHHHhC-------------CcEEEEeCCHHHHHHHHHhCC----------CCEEEECCHHHccc-C
Confidence 69999999999999988873 389999999999999988741 68899999988766 5
Q ss_pred CCeeEEEEcc-cccccc---CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAF-GIRNVT---RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~-~l~~~~---~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++.+ ++++++ +...++.++.+.|+|||++++.++..+
T Consensus 99 ~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 145 (239)
T 3bxo_A 99 RKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGGVVVVEPWWFP 145 (239)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEEEEEECCCCCT
T ss_pred CCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCeEEEEEeccCc
Confidence 7899999654 788874 567899999999999999998765443
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.9e-18 Score=111.61 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
+|||||||+|..+..+++.. ..+++++|+|+.+++.++++....+ .+++++..|.... ++
T Consensus 63 rVLdiG~G~G~~~~~~~~~~------------~~~v~~id~~~~~~~~a~~~~~~~~------~~~~~~~~~a~~~~~~~ 124 (236)
T 3orh_A 63 RVLEVGFGMAIAASKVQEAP------------IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTL 124 (236)
T ss_dssp EEEEECCTTSHHHHHHTTSC------------EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGS
T ss_pred eEEEECCCccHHHHHHHHhC------------CcEEEEEeCCHHHHHHHHHHHhhCC------CceEEEeehHHhhcccc
Confidence 69999999999988887753 3579999999999999999887655 2688888887654 46
Q ss_pred CCCCeeEEEE-----ccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTI-----AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.++||.|+. ...+++.++...++.++.|+|||||+|.+.+
T Consensus 125 ~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 125 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred cccCCceEEEeeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 6788999975 4445667788999999999999999998754
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-16 Score=104.38 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=83.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.+..+..+ +++++..|+.+....
T Consensus 57 ~~vLDlGcG~G~~~~~la~~-------------~~~v~~vD~s~~~~~~a~~~~~~~g~~~----~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 57 ELLWDIGGGSGSVSVEWCLA-------------GGRAITIEPRADRIENIQKNIDTYGLSP----RMRAVQGTAPAALAD 119 (204)
T ss_dssp CEEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEESCTTGGGTT
T ss_pred CEEEEecCCCCHHHHHHHHc-------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CEEEEeCchhhhccc
Confidence 36999999999999988886 4689999999999999999988877654 799999998874223
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
...||+|++...+ +.. ++.++.+.|+|||++++....
T Consensus 120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~ 156 (204)
T 3njr_A 120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT 156 (204)
T ss_dssp SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS
T ss_pred CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC
Confidence 3579999987644 455 999999999999999886654
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.5e-17 Score=114.05 Aligned_cols=100 Identities=11% Similarity=0.053 Sum_probs=86.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +..+++++|+| +++..++++....++.+ +++++.+|+.+.+++.
T Consensus 69 ~VLDvGcG~G~~~~~la~~------------g~~~v~gvD~s-~~l~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 131 (349)
T 3q7e_A 69 VVLDVGSGTGILCMFAAKA------------GARKVIGIECS-SISDYAVKIVKANKLDH----VVTIIKGKVEEVELPV 131 (349)
T ss_dssp EEEEESCTTSHHHHHHHHT------------TCSEEEEEECS-THHHHHHHHHHHTTCTT----TEEEEESCTTTCCCSS
T ss_pred EEEEEeccchHHHHHHHHC------------CCCEEEEECcH-HHHHHHHHHHHHcCCCC----cEEEEECcHHHccCCC
Confidence 6999999999999988876 25699999999 59999999998877664 7999999999988888
Q ss_pred CCeeEEEEccc---cccccCHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|++..+ +.+...+..++..+.++|||||+++.
T Consensus 132 ~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 132 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred CceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEcc
Confidence 89999999765 34446889999999999999999863
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-17 Score=109.06 Aligned_cols=107 Identities=14% Similarity=0.134 Sum_probs=87.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++.++ +..+++++|+++.+++.+++++...++.+ +++++..|+.+. + .
T Consensus 61 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~l~~~ 126 (221)
T 3u81_A 61 LVLELGAYCGYSAVRMARLLQ----------PGARLLTMEINPDCAAITQQMLNFAGLQD----KVTILNGASQDLIPQL 126 (221)
T ss_dssp EEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCHHHHHHHHHHHHHHTCGG----GEEEEESCHHHHGGGT
T ss_pred EEEEECCCCCHHHHHHHHhCC----------CCCEEEEEeCChHHHHHHHHHHHHcCCCC----ceEEEECCHHHHHHHH
Confidence 699999999999999988754 36799999999999999999998877653 799999997552 2 2
Q ss_pred C----CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 E----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. .++||+|++....++..+....+..+ ++|+|||++++.+...
T Consensus 127 ~~~~~~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 127 KKKYDVDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp TTTSCCCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred HHhcCCCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 2 26899999988777776666777777 9999999998865544
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-17 Score=105.61 Aligned_cols=98 Identities=10% Similarity=0.003 Sum_probs=84.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++. ..+++++|+++.+++.+++++...+.. +++++..|..+....
T Consensus 79 ~~vLdiG~G~G~~~~~la~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 140 (210)
T 3lbf_A 79 SRVLEIGTGSGYQTAILAHL-------------VQHVCSVERIKGLQWQARRRLKNLDLH-----NVSTRHGDGWQGWQA 140 (210)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCGG
T ss_pred CEEEEEcCCCCHHHHHHHHh-------------CCEEEEEecCHHHHHHHHHHHHHcCCC-----ceEEEECCcccCCcc
Confidence 36999999999999988886 468999999999999999999876654 799999998876555
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++...++++++ .+.+.|+|||++++....
T Consensus 141 ~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 141 RAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp GCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEECS
T ss_pred CCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEcC
Confidence 678999999999988875 578999999999886543
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-17 Score=105.56 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=75.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.+.+..+... ++.++..|....
T Consensus 59 ~~VLDlGcGtG~~~~~la~~~~-----------~~~V~gvD~s~~~l~~~~~~a~~~~-------~v~~~~~d~~~~~~~ 120 (210)
T 1nt2_A 59 ERVLYLGAASGTTVSHLADIVD-----------EGIIYAVEYSAKPFEKLLELVRERN-------NIIPLLFDASKPWKY 120 (210)
T ss_dssp CEEEEETCTTSHHHHHHHHHTT-----------TSEEEEECCCHHHHHHHHHHHHHCS-------SEEEECSCTTCGGGT
T ss_pred CEEEEECCcCCHHHHHHHHHcC-----------CCEEEEEECCHHHHHHHHHHHhcCC-------CeEEEEcCCCCchhh
Confidence 3699999999999999988753 4689999999998877666555432 788888887663
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++. ++||+|++... ...+...++.++.++|||||++++.-
T Consensus 121 ~~~~-~~fD~V~~~~~--~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 121 SGIV-EKVDLIYQDIA--QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp TTTC-CCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccc-cceeEEEEecc--ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 333 78999998732 11234455899999999999998863
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=6.8e-17 Score=107.58 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=80.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh------ccCCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD------LFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~ 75 (131)
.|||||||+|.++..+++..+ ...++|+|+|+.+++.+++++.. ... .++.++..|+.
T Consensus 49 ~vLDiGcG~G~~~~~la~~~p-----------~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-----~nv~~~~~d~~ 112 (235)
T 3ckk_A 49 EFADIGCGYGGLLVELSPLFP-----------DTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-----QNIACLRSNAM 112 (235)
T ss_dssp EEEEETCTTCHHHHHHGGGST-----------TSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-----TTEEEEECCTT
T ss_pred eEEEEccCCcHHHHHHHHHCC-----------CCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-----CeEEEEECcHH
Confidence 589999999999999988754 67899999999999999887653 222 27999999988
Q ss_pred c-CC--CCCCCeeEEEEccccccccC--------HHHHHHHHHHhccCCcEEEEEe
Q psy890 76 E-LP--IESDSYSAYTIAFGIRNVTR--------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 76 ~-~~--~~~~~~D~i~~~~~l~~~~~--------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ ++ ++.++||.|++.+.-.+... ...++.++.++|+|||.+++..
T Consensus 113 ~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 113 KHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp TCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred HhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 6 55 66789999988665433321 1478999999999999998853
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=6.5e-17 Score=112.88 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=85.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +..+++++|+|+ +++.++++++..++.+ +++++..|+.+.+++.
T Consensus 67 ~VLDiGcGtG~ls~~la~~------------g~~~v~gvD~s~-~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~ 129 (340)
T 2fyt_A 67 VVLDVGCGTGILSMFAAKA------------GAKKVLGVDQSE-ILYQAMDIIRLNKLED----TITLIKGKIEEVHLPV 129 (340)
T ss_dssp EEEEETCTTSHHHHHHHHT------------TCSEEEEEESST-HHHHHHHHHHHTTCTT----TEEEEESCTTTSCCSC
T ss_pred EEEEeeccCcHHHHHHHHc------------CCCEEEEEChHH-HHHHHHHHHHHcCCCC----cEEEEEeeHHHhcCCC
Confidence 6999999999999988875 245899999996 9999999988877654 8999999999888777
Q ss_pred CCeeEEEEcc---ccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAF---GIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++.. .+.+..++..++.++.+.|||||+++
T Consensus 130 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 130 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred CcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 8999999876 45555677889999999999999987
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=102.74 Aligned_cols=100 Identities=17% Similarity=0.079 Sum_probs=84.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.. ++.++..|+...+++
T Consensus 48 ~~vLdiG~G~G~~~~~l~~~-------------~~~v~~~D~~~~~~~~a~~~~~----------~~~~~~~d~~~~~~~ 104 (195)
T 3cgg_A 48 AKILDAGCGQGRIGGYLSKQ-------------GHDVLGTDLDPILIDYAKQDFP----------EARWVVGDLSVDQIS 104 (195)
T ss_dssp CEEEEETCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTTSCCC
T ss_pred CeEEEECCCCCHHHHHHHHC-------------CCcEEEEcCCHHHHHHHHHhCC----------CCcEEEcccccCCCC
Confidence 36999999999999988875 4589999999999999988762 678899998887777
Q ss_pred CCCeeEEEEc-cccccc--cCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIA-FGIRNV--TRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~-~~l~~~--~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++. ..++++ ++...++.++.+.|+|||++++.....
T Consensus 105 ~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 105 ETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp CCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred CCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 7899999998 667776 356889999999999999998865443
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=105.88 Aligned_cols=101 Identities=12% Similarity=0.036 Sum_probs=84.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|||+|||+|..+..+++.++ +..+|+++|++++|++.++++..... ++..+..|....
T Consensus 79 ~~VldlG~G~G~~~~~la~~VG----------~~G~V~avD~s~~~~~~l~~~a~~~~-------ni~~V~~d~~~p~~~ 141 (233)
T 4df3_A 79 DRILYLGIASGTTASHMSDIIG----------PRGRIYGVEFAPRVMRDLLTVVRDRR-------NIFPILGDARFPEKY 141 (233)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC----------TTCEEEEEECCHHHHHHHHHHSTTCT-------TEEEEESCTTCGGGG
T ss_pred CEEEEecCcCCHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHHhhHhhc-------CeeEEEEeccCcccc
Confidence 5799999999999999999986 57899999999999999998887654 788888876553
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+...+.+|+|++.. .+..+...++.++.+.|||||++++..
T Consensus 142 ~~~~~~vDvVf~d~--~~~~~~~~~l~~~~r~LKpGG~lvI~i 182 (233)
T 4df3_A 142 RHLVEGVDGLYADV--AQPEQAAIVVRNARFFLRDGGYMLMAI 182 (233)
T ss_dssp TTTCCCEEEEEECC--CCTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceEEEEEEec--cCChhHHHHHHHHHHhccCCCEEEEEE
Confidence 35567899998653 344567789999999999999998864
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.9e-17 Score=108.09 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=85.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|||+|||+|..+..++...+ ..+++++|+|+.++..++++....++. +++++..|+.+.+..
T Consensus 83 ~vLDiG~G~G~~~i~la~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~l~-----~v~~~~~d~~~~~~~~ 146 (249)
T 3g89_A 83 RVLDLGTGAGFPGLPLKIVRP-----------ELELVLVDATRKKVAFVERAIEVLGLK-----GARALWGRAEVLAREA 146 (249)
T ss_dssp EEEEETCTTTTTHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEECCHHHHTTST
T ss_pred EEEEEcCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHhCCC-----ceEEEECcHHHhhccc
Confidence 699999999999999888754 679999999999999999999887764 799999998887542
Q ss_pred --CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 --SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 --~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++.. +.+...++..+.++|+|||++++...
T Consensus 147 ~~~~~fD~I~s~a----~~~~~~ll~~~~~~LkpgG~l~~~~g 185 (249)
T 3g89_A 147 GHREAYARAVARA----VAPLCVLSELLLPFLEVGGAAVAMKG 185 (249)
T ss_dssp TTTTCEEEEEEES----SCCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred ccCCCceEEEECC----cCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 47899999864 35678899999999999999988653
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-17 Score=105.19 Aligned_cols=106 Identities=12% Similarity=0.116 Sum_probs=84.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCC-CCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV-PVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-- 78 (131)
+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+.. + +++++..|+.+..
T Consensus 56 ~vLDlGcGtG~~~~~~~~~------------~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~----~v~~~~~d~~~~~~~ 119 (201)
T 2ift_A 56 ECLDGFAGSGSLGFEALSR------------QAKKVTFLELDKTVANQLKKNLQTLKCSSE----QAEVINQSSLDFLKQ 119 (201)
T ss_dssp EEEETTCTTCHHHHHHHHT------------TCSEEEEECSCHHHHHHHHHHHHHTTCCTT----TEEEECSCHHHHTTS
T ss_pred eEEEcCCccCHHHHHHHHc------------cCCEEEEEECCHHHHHHHHHHHHHhCCCcc----ceEEEECCHHHHHHh
Confidence 6899999999999887664 1458999999999999999999877652 2 7999999987653
Q ss_pred CCCCC-eeEEEEccccccccCHHHHHHHH--HHhccCCcEEEEEeccCC
Q psy890 79 IESDS-YSAYTIAFGIRNVTRIDKALSEA--YRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ~~~~~-~D~i~~~~~l~~~~~~~~~l~~~--~~~L~p~G~l~~~~~~~~ 124 (131)
...++ ||+|++...++ ..+....+..+ .++|+|||++++......
T Consensus 120 ~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i~~~~~~ 167 (201)
T 2ift_A 120 PQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYVETEKDK 167 (201)
T ss_dssp CCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEEEEESSS
T ss_pred hccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEEEECCCC
Confidence 23568 99999987754 55667788888 567999999988655443
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.6e-17 Score=107.06 Aligned_cols=102 Identities=17% Similarity=0.188 Sum_probs=85.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCC-CCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV-PVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~-- 78 (131)
+|||+|||+|..+..+++.++ +..+++++|+++.+++.++++++..++. + +++++.+|+.+..
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~----~i~~~~gda~~~l~~ 124 (221)
T 3dr5_A 59 GAIAITPAAGLVGLYILNGLA----------DNTTLTCIDPESEHQRQAKALFREAGYSPS----RVRFLLSRPLDVMSR 124 (221)
T ss_dssp EEEEESTTHHHHHHHHHHHSC----------TTSEEEEECSCHHHHHHHHHHHHHTTCCGG----GEEEECSCHHHHGGG
T ss_pred CEEEEcCCchHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCcC----cEEEEEcCHHHHHHH
Confidence 699999999999999998864 3679999999999999999999887765 4 8999999976642
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+..++||+|++... ..+...++.++.++|+|||++++-+
T Consensus 125 ~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 125 LANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp SCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETT
T ss_pred hcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeC
Confidence 33578999998653 3466778999999999999998743
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.5e-17 Score=113.54 Aligned_cols=100 Identities=13% Similarity=0.099 Sum_probs=87.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+.+++.+++++...+. +++++..|+.+.....
T Consensus 236 ~VLDlGcG~G~~~~~la~~-------------g~~V~gvDis~~al~~A~~n~~~~~~------~v~~~~~D~~~~~~~~ 296 (381)
T 3dmg_A 236 QVLDLGAGYGALTLPLARM-------------GAEVVGVEDDLASVLSLQKGLEANAL------KAQALHSDVDEALTEE 296 (381)
T ss_dssp EEEEETCTTSTTHHHHHHT-------------TCEEEEEESBHHHHHHHHHHHHHTTC------CCEEEECSTTTTSCTT
T ss_pred EEEEEeeeCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCC------CeEEEEcchhhccccC
Confidence 6999999999999999876 46899999999999999999887653 5889999988876656
Q ss_pred CCeeEEEEcccccc-----ccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++..+++ ......++.++.++|+|||+++++.
T Consensus 297 ~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 297 ARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp CCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 78999999988887 4467789999999999999999864
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-17 Score=108.13 Aligned_cols=103 Identities=13% Similarity=0.130 Sum_probs=84.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
+|||+|||+|.++..+++.. ..+++++|+++.+++.+++++...++.+ +++++..|+.+.. +
T Consensus 52 ~vLDlG~G~G~~~~~la~~~------------~~~v~gvDi~~~~~~~a~~n~~~~~~~~----~v~~~~~D~~~~~~~~ 115 (259)
T 3lpm_A 52 KIIDLCSGNGIIPLLLSTRT------------KAKIVGVEIQERLADMAKRSVAYNQLED----QIEIIEYDLKKITDLI 115 (259)
T ss_dssp EEEETTCTTTHHHHHHHTTC------------CCEEEEECCSHHHHHHHHHHHHHTTCTT----TEEEECSCGGGGGGTS
T ss_pred EEEEcCCchhHHHHHHHHhc------------CCcEEEEECCHHHHHHHHHHHHHCCCcc----cEEEEECcHHHhhhhh
Confidence 69999999999999888763 2389999999999999999998887764 7999999988865 4
Q ss_pred CCCCeeEEEEccccccc--------------------cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNV--------------------TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~--------------------~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.++||+|+++...... .+...++..+.++|+|||+++++.
T Consensus 116 ~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 176 (259)
T 3lpm_A 116 PKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVH 176 (259)
T ss_dssp CTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEE
Confidence 56899999996543222 134678999999999999998854
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-16 Score=111.89 Aligned_cols=103 Identities=21% Similarity=0.205 Sum_probs=89.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++++...+..+ +++++..|+.+ +++.
T Consensus 186 ~vLDvG~G~G~~~~~l~~~~~-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~-~~~~ 248 (360)
T 1tw3_A 186 HVLDVGGGKGGFAAAIARRAP-----------HVSATVLEM-AGTVDTARSYLKDEGLSD----RVDVVEGDFFE-PLPR 248 (360)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-TTHHHHHHHHHHHTTCTT----TEEEEECCTTS-CCSS
T ss_pred EEEEeCCcCcHHHHHHHHhCC-----------CCEEEEecC-HHHHHHHHHHHHhcCCCC----ceEEEeCCCCC-CCCC
Confidence 699999999999999988754 678999999 999999999988776554 89999999865 3333
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.||+|++..++|++++. ..++.++.+.|+|||++++.+..
T Consensus 249 -~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~ 290 (360)
T 1tw3_A 249 -KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERD 290 (360)
T ss_dssp -CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEe
Confidence 49999999999999866 58999999999999999999876
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=106.01 Aligned_cols=97 Identities=21% Similarity=0.300 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. .+++++|+|+.+++.++++....+ .++.+...|+.+.+.+
T Consensus 36 ~vLdiG~G~G~~~~~l~~~--------------~~v~~vD~s~~~~~~a~~~~~~~~------~~~~~~~~d~~~~~~~- 94 (243)
T 3d2l_A 36 RIADIGCGTGTATLLLADH--------------YEVTGVDLSEEMLEIAQEKAMETN------RHVDFWVQDMRELELP- 94 (243)
T ss_dssp EEEEESCTTCHHHHHHTTT--------------SEEEEEESCHHHHHHHHHHHHHTT------CCCEEEECCGGGCCCS-
T ss_pred eEEEecCCCCHHHHHHhhC--------------CeEEEEECCHHHHHHHHHhhhhcC------CceEEEEcChhhcCCC-
Confidence 6999999999998877653 479999999999999999887654 1789999999887765
Q ss_pred CCeeEEEEcc-ccccc---cCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAF-GIRNV---TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~-~l~~~---~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|++.. +++++ .+....+.++.++|+|||++++.
T Consensus 95 ~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 136 (243)
T 3d2l_A 95 EPVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFD 136 (243)
T ss_dssp SCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 7899999986 88887 46678899999999999999873
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-16 Score=104.92 Aligned_cols=97 Identities=9% Similarity=0.072 Sum_probs=82.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LP 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~ 78 (131)
.+|||+|||+|.++..+++. +.+++++|+++.+++.++++. ..+...|+.. .+
T Consensus 34 ~~vLdiG~G~G~~~~~l~~~-------------~~~~~~~D~~~~~~~~~~~~~------------~~~~~~d~~~~~~~ 88 (230)
T 3cc8_A 34 KEVLDIGCSSGALGAAIKEN-------------GTRVSGIEAFPEAAEQAKEKL------------DHVVLGDIETMDMP 88 (230)
T ss_dssp SEEEEETCTTSHHHHHHHTT-------------TCEEEEEESSHHHHHHHHTTS------------SEEEESCTTTCCCC
T ss_pred CcEEEeCCCCCHHHHHHHhc-------------CCeEEEEeCCHHHHHHHHHhC------------CcEEEcchhhcCCC
Confidence 36999999999999988775 368999999999999887653 2467778765 45
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++.++||+|++..++++++++..++.++.+.|+|||++++....
T Consensus 89 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 132 (230)
T 3cc8_A 89 YEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPN 132 (230)
T ss_dssp SCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEEEEC
T ss_pred CCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 66788999999999999999999999999999999999987644
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=105.03 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=79.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc----
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE---- 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---- 76 (131)
.+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++..... ++.++..|+..
T Consensus 76 ~~VLDlGcG~G~~~~~la~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~-------~v~~~~~d~~~~~~~ 137 (230)
T 1fbn_A 76 SKILYLGASAGTTPSHVADIAD-----------KGIVYAIEYAPRIMRELLDACAERE-------NIIPILGDANKPQEY 137 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTT-----------TSEEEEEESCHHHHHHHHHHTTTCT-------TEEEEECCTTCGGGG
T ss_pred CEEEEEcccCCHHHHHHHHHcC-----------CcEEEEEECCHHHHHHHHHHhhcCC-------CeEEEECCCCCcccc
Confidence 3699999999999999988753 4689999999999999998876542 89999999887
Q ss_pred CCCCCCCeeEEEEccccccccCH---HHHHHHHHHhccCCcEEEEE
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRI---DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~---~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++. .+||+|+ ++++++ ..++.++.+.|+|||++++.
T Consensus 138 ~~~~-~~~D~v~-----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 138 ANIV-EKVDVIY-----EDVAQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp TTTS-CCEEEEE-----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccC-ccEEEEE-----EecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 5555 7899998 344554 77799999999999999885
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=102.70 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=83.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++...+ ..+++++|+|+.+++.++++....+.. ++++...|+.+.+ +.
T Consensus 68 ~vLDiG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~-~~ 130 (207)
T 1jsx_A 68 RFIDVGTGPGLPGIPLSIVRP-----------EAHFTLLDSLGKRVRFLRQVQHELKLE-----NIEPVQSRVEEFP-SE 130 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCT-----------TSEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEECCTTTSC-CC
T ss_pred eEEEECCCCCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEecchhhCC-cc
Confidence 689999999999999988754 679999999999999999998876643 6899999988765 45
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++.. +.+...++..+.+.|+|||++++..
T Consensus 131 ~~~D~i~~~~----~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 131 PPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcCEEEEec----cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 6899999753 3677899999999999999998864
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=106.37 Aligned_cols=105 Identities=12% Similarity=0.016 Sum_probs=86.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~ 79 (131)
.+|||+|||+|..+..+++.++ +..+++++|+++.+++.+++++...++.+ +++++..|+.+. +.
T Consensus 65 ~~VLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~g~~~----~v~~~~~d~~~~l~~ 130 (248)
T 3tfw_A 65 KRILEIGTLGGYSTIWMARELP----------ADGQLLTLEADAHHAQVARENLQLAGVDQ----RVTLREGPALQSLES 130 (248)
T ss_dssp SEEEEECCTTSHHHHHHHTTSC----------TTCEEEEEECCHHHHHHHHHHHHHTTCTT----TEEEEESCHHHHHHT
T ss_pred CEEEEecCCchHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHh
Confidence 3699999999999999988764 36799999999999999999998877664 899999997663 32
Q ss_pred C--CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 E--SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~--~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
. .++||+|++... ..+...++.++.++|+|||++++.+..
T Consensus 131 ~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 131 LGECPAFDLIFIDAD---KPNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp CCSCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred cCCCCCeEEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 2 348999998653 456678899999999999999886544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=106.15 Aligned_cols=98 Identities=23% Similarity=0.367 Sum_probs=81.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+. ++.++..|+.+.+.+
T Consensus 44 ~vLDlGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~l~~a~~~~~~~~~------~v~~~~~d~~~~~~~- 103 (252)
T 1wzn_A 44 RVLDLACGTGIPTLELAER-------------GYEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIAFK- 103 (252)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCCCC-
T ss_pred EEEEeCCCCCHHHHHHHHC-------------CCeEEEEECCHHHHHHHHHHHHhcCC------ceEEEECChhhcccC-
Confidence 6999999999999988875 46899999999999999998876542 689999999887654
Q ss_pred CCeeEEEEccc-cccc--cCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFG-IRNV--TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~-l~~~--~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|++.+. +++. .+....+.++.+.|+|||++++.
T Consensus 104 ~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~ 144 (252)
T 1wzn_A 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (252)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEe
Confidence 67999998643 3333 35778999999999999998763
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=107.99 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=80.5
Q ss_pred ceeeeecccchh----hHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc----c---------------
Q psy890 2 YILFYLVFPGDI----AFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL----F--------------- 58 (131)
Q Consensus 2 ~iLdig~G~G~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~----~--------------- 58 (131)
+|+|+|||||.. ++.+++..+... ...+++++|+|+.+++.|+++.... .
T Consensus 108 rIld~GCgTGee~ysiAi~L~e~~~~~~-------~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~ 180 (274)
T 1af7_A 108 RVWSAAASTGEEPYSIAITLADALGMAP-------GRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTG 180 (274)
T ss_dssp EEEESCCTTTHHHHHHHHHHHHHHCSCT-------TSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCT
T ss_pred EEEEeeccCChhHHHHHHHHHHhcccCC-------CCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhcccc
Confidence 699999999984 444445433100 1358999999999999999874210 0
Q ss_pred -------CCCCCCCceeEEecccccCCCC-CCCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEE
Q psy890 59 -------KVPVPNPRLRFLEANAEELPIE-SDSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 59 -------~~~~~~~~~~~~~~d~~~~~~~-~~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~ 118 (131)
+.+....++.|...|+.+.+++ .++||+|+|.++++++++. .+++.++.+.|+|||++++
T Consensus 181 ~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~l 250 (274)
T 1af7_A 181 PHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 250 (274)
T ss_dssp TSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0000001688999998876554 4689999999999988754 7899999999999999976
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-17 Score=113.46 Aligned_cols=102 Identities=16% Similarity=0.084 Sum_probs=86.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +..+++++|+| .+++.++++++..++.+ +++++..|+.+++++
T Consensus 65 ~~VLDlGcGtG~ls~~la~~------------g~~~V~gvD~s-~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~ 127 (376)
T 3r0q_C 65 KTVLDVGTGSGILAIWSAQA------------GARKVYAVEAT-KMADHARALVKANNLDH----IVEVIEGSVEDISLP 127 (376)
T ss_dssp CEEEEESCTTTHHHHHHHHT------------TCSEEEEEESS-TTHHHHHHHHHHTTCTT----TEEEEESCGGGCCCS
T ss_pred CEEEEeccCcCHHHHHHHhc------------CCCEEEEEccH-HHHHHHHHHHHHcCCCC----eEEEEECchhhcCcC
Confidence 36999999999999988876 24589999999 99999999998877764 799999999988766
Q ss_pred CCCeeEEEEccccccc---cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++....+.. ..+..++..+.++|+|||++++.+
T Consensus 128 -~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 128 -EKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp -SCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred -CcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 889999997655544 468889999999999999997643
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.8e-17 Score=115.18 Aligned_cols=112 Identities=13% Similarity=-0.005 Sum_probs=88.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh-------hccCCCCCCCceeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-------DLFKVPVPNPRLRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d 73 (131)
.+|||+|||+|..+..++...+ ..+++|+|+++.++..|+++.+ ..+... .+++++.+|
T Consensus 175 d~VLDLGCGtG~l~l~lA~~~g-----------~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~---~rVefi~GD 240 (438)
T 3uwp_A 175 DLFVDLGSGVGQVVLQVAAATN-----------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH---AEYTLERGD 240 (438)
T ss_dssp CEEEEESCTTSHHHHHHHHHCC-----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCC---CEEEEEECC
T ss_pred CEEEEeCCCCCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCC---CCeEEEECc
Confidence 3689999999999999987643 4579999999999999987542 233311 289999999
Q ss_pred cccCCCCC--CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcc
Q psy890 74 AEELPIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127 (131)
Q Consensus 74 ~~~~~~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~ 127 (131)
+.+.++.. ..||+|+++..+ +.++....|.++.+.|||||+|++.|...+...
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred ccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence 98876543 479999987665 457888889999999999999999877766543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=111.99 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=82.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|++ .++. +++.+..+..+ +++++..|+. .+.+
T Consensus 187 ~vLDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~~-~~~~--~~~~~~~~~~~----~v~~~~~d~~-~~~p- 246 (348)
T 3lst_A 187 TVADVGGGRGGFLLTVLREHP-----------GLQGVLLDRA-EVVA--RHRLDAPDVAG----RWKVVEGDFL-REVP- 246 (348)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TEEEEEEECH-HHHT--TCCCCCGGGTT----SEEEEECCTT-TCCC-
T ss_pred eEEEECCccCHHHHHHHHHCC-----------CCEEEEecCH-HHhh--cccccccCCCC----CeEEEecCCC-CCCC-
Confidence 699999999999999999864 6789999994 4444 33333333332 7999999986 2344
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
+||+|++.+++|++++. .+++.++++.|||||++++.|...+.
T Consensus 247 -~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~ 291 (348)
T 3lst_A 247 -HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPE 291 (348)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCS
T ss_pred -CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 89999999999999877 69999999999999999999876544
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=106.27 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=84.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh---ccCCCCCCCceeEEecccccC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD---LFKVPVPNPRLRFLEANAEEL- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~d~~~~- 77 (131)
+|||+|||+|.++..++...+ ..+++++|+++.+++.+++++.. .++.+ +++++..|+.+.
T Consensus 39 ~VLDlG~G~G~~~l~la~~~~-----------~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~----~v~~~~~D~~~~~ 103 (260)
T 2ozv_A 39 RIADLGAGAGAAGMAVAARLE-----------KAEVTLYERSQEMAEFARRSLELPDNAAFSA----RIEVLEADVTLRA 103 (260)
T ss_dssp EEEECCSSSSHHHHHHHHHCT-----------TEEEEEEESSHHHHHHHHHHTTSGGGTTTGG----GEEEEECCTTCCH
T ss_pred EEEEeCChHhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHhhhhCCCcc----eEEEEeCCHHHHh
Confidence 689999999999999988753 57899999999999999999887 66553 699999998876
Q ss_pred ------CCCCCCeeEEEEccccccc------------------cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 ------PIESDSYSAYTIAFGIRNV------------------TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ------~~~~~~~D~i~~~~~l~~~------------------~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++.++||+|+++...... .....++..+.++|+|||+++++-
T Consensus 104 ~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 104 KARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp HHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 2456789999997333221 246788999999999999998753
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=103.22 Aligned_cols=94 Identities=24% Similarity=0.287 Sum_probs=81.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..++. . +++|+|+.+++.++++ ++.++..|+...+++
T Consensus 49 ~~vLDiG~G~G~~~~~l~~--------------~---~~vD~s~~~~~~a~~~------------~~~~~~~d~~~~~~~ 99 (219)
T 1vlm_A 49 GRGVEIGVGTGRFAVPLKI--------------K---IGVEPSERMAEIARKR------------GVFVLKGTAENLPLK 99 (219)
T ss_dssp SCEEEETCTTSTTHHHHTC--------------C---EEEESCHHHHHHHHHT------------TCEEEECBTTBCCSC
T ss_pred CcEEEeCCCCCHHHHHHHH--------------H---hccCCCHHHHHHHHhc------------CCEEEEcccccCCCC
Confidence 3699999999998776532 2 9999999999998865 356788888888777
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++..++++++++..++.++.+.|+|||++++.....
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 100 DESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp TTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred CCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 7899999999999999999999999999999999999976553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-16 Score=104.75 Aligned_cols=101 Identities=22% Similarity=0.204 Sum_probs=84.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...++.+ +++++..|+.+. + .
T Consensus 74 ~vLDiG~G~G~~~~~la~~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 138 (232)
T 3ntv_A 74 NILEIGTAIGYSSMQFASISD-----------DIHVTTIERNETMIQYAKQNLATYHFEN----QVRIIEGNALEQFENV 138 (232)
T ss_dssp EEEEECCSSSHHHHHHHTTCT-----------TCEEEEEECCHHHHHHHHHHHHHTTCTT----TEEEEESCGGGCHHHH
T ss_pred EEEEEeCchhHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECCHHHHHHhh
Confidence 699999999999999988543 6799999999999999999998877654 899999998764 3 2
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|++.. ...+...++..+.+.|+|||++++-+
T Consensus 139 ~~~~fD~V~~~~---~~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 139 NDKVYDMIFIDA---AKAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TTSCEEEEEEET---TSSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred ccCCccEEEEcC---cHHHHHHHHHHHHHhcCCCeEEEEee
Confidence 357899999764 34567789999999999999998743
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.1e-16 Score=108.98 Aligned_cols=99 Identities=13% Similarity=0.110 Sum_probs=84.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +..+++++|++ .++..++++++..++.+ +++++..|+.+.+++.
T Consensus 41 ~VLDiGcGtG~ls~~la~~------------g~~~v~~vD~s-~~~~~a~~~~~~~~~~~----~i~~~~~d~~~~~~~~ 103 (328)
T 1g6q_1 41 IVLDVGCGTGILSMFAAKH------------GAKHVIGVDMS-SIIEMAKELVELNGFSD----KITLLRGKLEDVHLPF 103 (328)
T ss_dssp EEEEETCTTSHHHHHHHHT------------CCSEEEEEESS-THHHHHHHHHHHTTCTT----TEEEEESCTTTSCCSS
T ss_pred EEEEecCccHHHHHHHHHC------------CCCEEEEEChH-HHHHHHHHHHHHcCCCC----CEEEEECchhhccCCC
Confidence 6999999999999888775 24589999999 69999999988877664 7999999999887777
Q ss_pred CCeeEEEEccc---cccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFG---IRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~---l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++... +.+...+..++..+.++|+|||+++
T Consensus 104 ~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 104 PKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred CcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 88999999754 3444578889999999999999987
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-17 Score=119.25 Aligned_cols=101 Identities=11% Similarity=0.031 Sum_probs=80.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++. +.+++++|+|+.+++.++++ +... ....+...+...++++
T Consensus 109 ~~VLDiGcG~G~~~~~l~~~-------------g~~v~gvD~s~~~~~~a~~~----~~~~---~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 109 PFIVEIGCNDGIMLRTIQEA-------------GVRHLGFEPSSGVAAKAREK----GIRV---RTDFFEKATADDVRRT 168 (416)
T ss_dssp CEEEEETCTTTTTHHHHHHT-------------TCEEEEECCCHHHHHHHHTT----TCCE---ECSCCSHHHHHHHHHH
T ss_pred CEEEEecCCCCHHHHHHHHc-------------CCcEEEECCCHHHHHHHHHc----CCCc---ceeeechhhHhhcccC
Confidence 47999999999999988875 46899999999999999876 1110 0112333444455556
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++.+++++++++..++.+++++|||||++++...
T Consensus 169 ~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~ 209 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDP 209 (416)
T ss_dssp HCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeC
Confidence 68899999999999999999999999999999999998643
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-17 Score=105.56 Aligned_cols=102 Identities=15% Similarity=0.087 Sum_probs=85.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..++...+ ..+|+++|+|+.|++.++++....+... ++++ .|.... .+
T Consensus 51 ~~VLDlGCG~GplAl~l~~~~p-----------~a~~~A~Di~~~~leiar~~~~~~g~~~----~v~~--~d~~~~-~~ 112 (200)
T 3fzg_A 51 SSILDFGCGFNPLALYQWNENE-----------KIIYHAYDIDRAEIAFLSSIIGKLKTTI----KYRF--LNKESD-VY 112 (200)
T ss_dssp SEEEEETCTTHHHHHHHHCSSC-----------CCEEEEECSCHHHHHHHHHHHHHSCCSS----EEEE--ECCHHH-HT
T ss_pred CeEEEecCCCCHHHHHHHhcCC-----------CCEEEEEeCCHHHHHHHHHHHHhcCCCc----cEEE--eccccc-CC
Confidence 3799999999999998877654 6799999999999999999998877543 5555 554433 35
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|++...+|.+++....+.++.+.|+|||+++-.+
T Consensus 113 ~~~~DvVLa~k~LHlL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 113 KGTYDVVFLLKMLPVLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp TSEEEEEEEETCHHHHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred CCCcChhhHhhHHHhhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 5789999999999999877888889999999999998765
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-16 Score=105.01 Aligned_cols=102 Identities=18% Similarity=0.180 Sum_probs=86.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++.+. +..+++++|+++.+++.+++++...+..+ +++++..|+.+. ++
T Consensus 95 ~~vldiG~G~G~~~~~l~~~~~----------~~~~v~~~D~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~-~~ 159 (255)
T 3mb5_A 95 DFIVEAGVGSGALTLFLANIVG----------PEGRVVSYEIREDFAKLAWENIKWAGFDD----RVTIKLKDIYEG-IE 159 (255)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEECSCHHHHHHHHHHHHHHTCTT----TEEEECSCGGGC-CC
T ss_pred CEEEEecCCchHHHHHHHHHhC----------CCeEEEEEecCHHHHHHHHHHHHHcCCCC----ceEEEECchhhc-cC
Confidence 3699999999999999998854 36799999999999999999998877653 699999998864 56
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++ +.+++..++.++.+.|+|||++++....
T Consensus 160 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 160 EENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp CCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 678999988 3567778899999999999999887643
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-16 Score=106.42 Aligned_cols=101 Identities=16% Similarity=0.120 Sum_probs=85.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEecccccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
.+|||+|||+|..+..+++.+. +..+++++|+++.+++.+++++... +.. +++++..|+.+ ++
T Consensus 112 ~~VLD~G~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~g~~-----~v~~~~~d~~~-~~ 175 (275)
T 1yb2_A 112 MDILEVGVGSGNMSSYILYALN----------GKGTLTVVERDEDNLKKAMDNLSEFYDIG-----NVRTSRSDIAD-FI 175 (275)
T ss_dssp CEEEEECCTTSHHHHHHHHHHT----------TSSEEEEECSCHHHHHHHHHHHHTTSCCT-----TEEEECSCTTT-CC
T ss_pred CEEEEecCCCCHHHHHHHHHcC----------CCCEEEEEECCHHHHHHHHHHHHhcCCCC-----cEEEEECchhc-cC
Confidence 3699999999999999988753 3679999999999999999998776 432 79999999877 55
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.++||+|++ +++++..++.++.+.|+|||++++....
T Consensus 176 ~~~~fD~Vi~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 213 (275)
T 1yb2_A 176 SDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN 213 (275)
T ss_dssp CSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred cCCCccEEEE-----cCcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 5678999998 4667788999999999999999987654
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=103.20 Aligned_cols=102 Identities=10% Similarity=0.003 Sum_probs=84.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +..+++++|+|+.+++.++++....+.. ++++...|+.+. .
T Consensus 62 ~~vLDiG~G~G~~~~~l~~~------------~~~~v~~vD~s~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~--~ 122 (205)
T 3grz_A 62 LTVADVGTGSGILAIAAHKL------------GAKSVLATDISDESMTAAEENAALNGIY-----DIALQKTSLLAD--V 122 (205)
T ss_dssp CEEEEETCTTSHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCC-----CCEEEESSTTTT--C
T ss_pred CEEEEECCCCCHHHHHHHHC------------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEecccccc--C
Confidence 36999999999999887764 2568999999999999999998876654 589999998764 3
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|+++..+++ ...++.++.++|+|||++++.++...
T Consensus 123 ~~~fD~i~~~~~~~~---~~~~l~~~~~~L~~gG~l~~~~~~~~ 163 (205)
T 3grz_A 123 DGKFDLIVANILAEI---LLDLIPQLDSHLNEDGQVIFSGIDYL 163 (205)
T ss_dssp CSCEEEEEEESCHHH---HHHHGGGSGGGEEEEEEEEEEEEEGG
T ss_pred CCCceEEEECCcHHH---HHHHHHHHHHhcCCCCEEEEEecCcc
Confidence 478999999877654 47789999999999999998765543
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.68 E-value=6.3e-16 Score=102.06 Aligned_cols=103 Identities=15% Similarity=0.145 Sum_probs=82.1
Q ss_pred Cceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C
Q psy890 1 MYILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 1 ~~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
.+|||+||| +|.++..+++.. ..+++++|+++.+++.++++....+. +++++..|.... +
T Consensus 57 ~~vLDlG~G~~G~~~~~la~~~------------~~~v~~vD~s~~~~~~a~~~~~~~~~------~v~~~~~d~~~~~~ 118 (230)
T 3evz_A 57 EVALEIGTGHTAMMALMAEKFF------------NCKVTATEVDEEFFEYARRNIERNNS------NVRLVKSNGGIIKG 118 (230)
T ss_dssp CEEEEECCTTTCHHHHHHHHHH------------CCEEEEEECCHHHHHHHHHHHHHTTC------CCEEEECSSCSSTT
T ss_pred CEEEEcCCCHHHHHHHHHHHhc------------CCEEEEEECCHHHHHHHHHHHHHhCC------CcEEEeCCchhhhh
Confidence 369999999 999999988874 46899999999999999999887653 688999996543 3
Q ss_pred CCCCCeeEEEEccccccccC-------------------HHHHHHHHHHhccCCcEEEEEec
Q psy890 79 IESDSYSAYTIAFGIRNVTR-------------------IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
++.++||+|+++...+...+ ...++.++.++|+|||+++++..
T Consensus 119 ~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 180 (230)
T 3evz_A 119 VVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLP 180 (230)
T ss_dssp TCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 45688999999866544322 47889999999999999988643
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-16 Score=101.05 Aligned_cols=103 Identities=14% Similarity=0.059 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~~ 80 (131)
+|||+|||+|..+..++... ..+++++|+|+.+++.++++....+.. +++++..|+.+ .+..
T Consensus 57 ~vLDlgcG~G~~~~~l~~~~------------~~~V~~vD~s~~~l~~a~~~~~~~~~~-----~v~~~~~D~~~~~~~~ 119 (202)
T 2fpo_A 57 QCLDCFAGSGALGLEALSRY------------AAGATLIEMDRAVSQQLIKNLATLKAG-----NARVVNSNAMSFLAQK 119 (202)
T ss_dssp EEEETTCTTCHHHHHHHHTT------------CSEEEEECSCHHHHHHHHHHHHHTTCC-----SEEEECSCHHHHHSSC
T ss_pred eEEEeCCCcCHHHHHHHhcC------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEECCHHHHHhhc
Confidence 69999999999998876651 358999999999999999999877653 89999999876 3455
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~~~~~ 122 (131)
.++||+|++...++ .......+..+.+ +|+|||++++....
T Consensus 120 ~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i~~~~ 162 (202)
T 2fpo_A 120 GTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYVESEV 162 (202)
T ss_dssp CCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEEEEEG
T ss_pred CCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 57899999976644 4566777888866 59999999876544
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.3e-16 Score=105.58 Aligned_cols=99 Identities=15% Similarity=0.034 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+|+++|+|+.|++.++++..... .+..+...+........
T Consensus 48 ~VLDlGcGtG~~a~~La~~-------------g~~V~gvD~S~~ml~~Ar~~~~~~~------v~~~~~~~~~~~~~~~~ 108 (261)
T 3iv6_A 48 TVAVIGASTRFLIEKALER-------------GASVTVFDFSQRMCDDLAEALADRC------VTIDLLDITAEIPKELA 108 (261)
T ss_dssp EEEEECTTCHHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHTSSSC------CEEEECCTTSCCCGGGT
T ss_pred EEEEEeCcchHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHhcc------ceeeeeecccccccccC
Confidence 6999999999999999875 5689999999999999999876531 03344333331011124
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++.+++++. +....+.++.++| |||++++..
T Consensus 109 ~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~ 148 (261)
T 3iv6_A 109 GHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASV 148 (261)
T ss_dssp TCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred CCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEe
Confidence 6899999999998875 5677899999999 999998753
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-16 Score=101.14 Aligned_cols=106 Identities=12% Similarity=0.081 Sum_probs=82.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++...+..+ ++.++..|+.+. +..
T Consensus 34 ~vLDlGcG~G~~~~~l~~~-~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~ 97 (177)
T 2esr_A 34 RVLDLFAGSGGLAIEAVSR-G-----------MSAAVLVEKNRKAQAIIQDNIIMTKAEN----RFTLLKMEAERAIDCL 97 (177)
T ss_dssp EEEEETCTTCHHHHHHHHT-T-----------CCEEEEECCCHHHHHHHHHHHHTTTCGG----GEEEECSCHHHHHHHB
T ss_pred eEEEeCCCCCHHHHHHHHc-C-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----ceEEEECcHHHhHHhh
Confidence 6899999999999988875 2 4689999999999999999998776543 799999998763 333
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++...++ .......+..+. ++|+|||++++......
T Consensus 98 ~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~ 142 (177)
T 2esr_A 98 TGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDKTV 142 (177)
T ss_dssp CSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred cCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence 46799999976543 234456667776 89999999988655543
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.7e-16 Score=103.72 Aligned_cols=101 Identities=20% Similarity=0.180 Sum_probs=86.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-cCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-FKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+|||+|||+|.++..+++.+. +..+++++|+++.+++.+++++... + . .++.+...|+.+.+++
T Consensus 99 ~vLdiG~G~G~~~~~l~~~~~----------~~~~v~~~D~~~~~~~~a~~~~~~~~g-~----~~v~~~~~d~~~~~~~ 163 (258)
T 2pwy_A 99 RVLEAGTGSGGLTLFLARAVG----------EKGLVESYEARPHHLAQAERNVRAFWQ-V----ENVRFHLGKLEEAELE 163 (258)
T ss_dssp EEEEECCTTSHHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHHHHCC-C----CCEEEEESCGGGCCCC
T ss_pred EEEEECCCcCHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhcC-C----CCEEEEECchhhcCCC
Confidence 699999999999999998864 3679999999999999999998776 4 2 2899999999887677
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++ +.++...++.++.+.|+|||++++....
T Consensus 164 ~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 200 (258)
T 2pwy_A 164 EAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPN 200 (258)
T ss_dssp TTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESC
T ss_pred CCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 788999998 3567778899999999999999987654
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.4e-16 Score=100.49 Aligned_cols=101 Identities=16% Similarity=-0.003 Sum_probs=82.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++..+ +..+++++|+++.+++.++++....+.. ++.+...|.......
T Consensus 79 ~~vLdiG~G~G~~~~~l~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~~~~~ 143 (215)
T 2yxe_A 79 MKVLEIGTGCGYHAAVTAEIVG----------EDGLVVSIERIPELAEKAERTLRKLGYD-----NVIVIVGDGTLGYEP 143 (215)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHHHHTCT-----TEEEEESCGGGCCGG
T ss_pred CEEEEECCCccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----CeEEEECCcccCCCC
Confidence 3699999999999999988863 2478999999999999999998776543 689999987543222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..++++++ .++.+.|+|||++++....
T Consensus 144 ~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~~ 179 (215)
T 2yxe_A 144 LAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVGR 179 (215)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEESS
T ss_pred CCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEECC
Confidence 56899999999998876 4788999999999887543
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=102.57 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=83.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.+++++...+..+ +++++..|..+. +..
T Consensus 59 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 124 (210)
T 3c3p_A 59 LVVVPGDGLGCASWWFARAIS----------ISSRVVMIDPDRDNVEHARRMLHDNGLID----RVELQVGDPLGIAAGQ 124 (210)
T ss_dssp EEEEESCGGGHHHHHHHTTSC----------TTCEEEEEESCHHHHHHHHHHHHHHSGGG----GEEEEESCHHHHHTTC
T ss_pred EEEEEcCCccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHCCCCc----eEEEEEecHHHHhccC
Confidence 699999999999999988754 25799999999999999999988766543 799999997654 433
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+ ||+|++... ..+...++.++.++|+|||++++.+
T Consensus 125 ~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 125 RD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp CS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEEES
T ss_pred CC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEEEC
Confidence 45 999998742 4577889999999999999998744
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-18 Score=113.17 Aligned_cols=99 Identities=10% Similarity=0.025 Sum_probs=80.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..+++. +.+++++|+|+.+++.+++++...+..+ ++.++..|+.+.+ .
T Consensus 80 ~~vLD~gcG~G~~~~~la~~-------------~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~-~ 141 (241)
T 3gdh_A 80 DVVVDAFCGVGGNTIQFALT-------------GMRVIAIDIDPVKIALARNNAEVYGIAD----KIEFICGDFLLLA-S 141 (241)
T ss_dssp SEEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTCGG----GEEEEESCHHHHG-G
T ss_pred CEEEECccccCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCCCc----CeEEEECChHHhc-c
Confidence 36999999999999999875 5789999999999999999998776543 7999999988765 4
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
.++||+|+++..+++..+....+.++.++|+|||+++
T Consensus 142 ~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i 178 (241)
T 3gdh_A 142 FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEI 178 (241)
T ss_dssp GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHH
T ss_pred cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeH
Confidence 5789999999888877655445556666666666643
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-16 Score=100.91 Aligned_cols=105 Identities=12% Similarity=0.042 Sum_probs=83.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|..+..++.. ...+++++|+++.+++.++++....+..+ +++++..|+.+..
T Consensus 47 ~vLD~GcG~G~~~~~~~~~------------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~ 110 (187)
T 2fhp_A 47 MALDLYSGSGGLAIEAVSR------------GMDKSICIEKNFAALKVIKENIAITKEPE----KFEVRKMDANRALEQF 110 (187)
T ss_dssp EEEETTCTTCHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHHTCGG----GEEEEESCHHHHHHHH
T ss_pred CEEEeCCccCHHHHHHHHc------------CCCEEEEEECCHHHHHHHHHHHHHhCCCc----ceEEEECcHHHHHHHH
Confidence 6899999999999987764 24689999999999999999988766543 7999999977632
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHH--HHhccCCcEEEEEeccC
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEA--YRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~--~~~L~p~G~l~~~~~~~ 123 (131)
...++||+|++....+ .......+..+ .++|+|||++++.....
T Consensus 111 ~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 111 YEEKLQFDLVLLDPPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp HHTTCCEEEEEECCCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred HhcCCCCCEEEECCCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 2257899999987644 44566667777 88899999998865444
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=107.06 Aligned_cols=105 Identities=19% Similarity=0.158 Sum_probs=88.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||+|..+..+++..+ ..++++.|. +.+++.++++..... . .+++++..|+.+.+.+
T Consensus 182 ~v~DvGgG~G~~~~~l~~~~p-----------~~~~~~~dl-p~v~~~a~~~~~~~~-~----~rv~~~~gD~~~~~~~- 243 (353)
T 4a6d_A 182 LMCDLGGGAGALAKECMSLYP-----------GCKITVFDI-PEVVWTAKQHFSFQE-E----EQIDFQEGDFFKDPLP- 243 (353)
T ss_dssp EEEEETCTTSHHHHHHHHHCS-----------SCEEEEEEC-HHHHHHHHHHSCC---C----CSEEEEESCTTTSCCC-
T ss_pred eEEeeCCCCCHHHHHHHHhCC-----------CceeEeccC-HHHHHHHHHhhhhcc-c----CceeeecCccccCCCC-
Confidence 589999999999999999875 778999997 789999988876544 2 2899999998765443
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.+|+|++.+++|++++. .++|+++++.|+|||+++++|...++
T Consensus 244 -~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~ 288 (353)
T 4a6d_A 244 -EADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDE 288 (353)
T ss_dssp -CCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCT
T ss_pred -CceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCC
Confidence 57999999999999865 57899999999999999999976544
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-16 Score=117.42 Aligned_cols=109 Identities=9% Similarity=0.026 Sum_probs=87.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCC-CCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV-PVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~ 80 (131)
+|||+|||+|.++..+++..+ +..+++++|+|+.+++.|++++...... ...-.+++++.+|+.++++.
T Consensus 724 rVLDVGCGTG~lai~LAr~g~----------p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~ 793 (950)
T 3htx_A 724 TLVDFGCGSGSLLDSLLDYPT----------SLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSR 793 (950)
T ss_dssp EEEEETCSSSHHHHHHTSSCC----------CCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTT
T ss_pred EEEEECCCCCHHHHHHHHhCC----------CCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcc
Confidence 699999999999998887642 2469999999999999999876532110 00002799999999998888
Q ss_pred CCCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++..+++++++.. .++.++.+.|+|| .+++...
T Consensus 794 d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTP 835 (950)
T 3htx_A 794 LHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTP 835 (950)
T ss_dssp SCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEEC
T ss_pred cCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEec
Confidence 88999999999999998755 6899999999999 6666543
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-16 Score=105.47 Aligned_cols=107 Identities=13% Similarity=0.016 Sum_probs=81.7
Q ss_pred ceeeeecccchhhHHHhhh--hcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc---cCCCCCCCc----------
Q psy890 2 YILFYLVFPGDIAFRFLNY--VDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL---FKVPVPNPR---------- 66 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~---~~~~~~~~~---------- 66 (131)
+|||+|||+|.++..+++. .+ ..+++++|+|+.+++.++++.... +... +
T Consensus 54 ~vLD~gcGsG~~~~~la~~~~~~-----------~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~----~~~~~~~~~~~ 118 (250)
T 1o9g_A 54 TLWDPCCGSGYLLTVLGLLHRRS-----------LRQVIASDVDPAPLELAAKNLALLSPAGLTA----RELERREQSER 118 (250)
T ss_dssp EEEETTCTTSHHHHHHHHHTGGG-----------EEEEEEEESCHHHHHHHHHHHHTTSHHHHHH----HHHHHHHHHHH
T ss_pred eEEECCCCCCHHHHHHHHHhccC-----------CCeEEEEECCHHHHHHHHHHHHHhhhccccc----cchhhhhhhhh
Confidence 6899999999999998887 32 568999999999999999877654 2210 1
Q ss_pred ---------------ee-------------EEecccccCCC-----CCCCeeEEEEcccccccc---------CHHHHHH
Q psy890 67 ---------------LR-------------FLEANAEELPI-----ESDSYSAYTIAFGIRNVT---------RIDKALS 104 (131)
Q Consensus 67 ---------------~~-------------~~~~d~~~~~~-----~~~~~D~i~~~~~l~~~~---------~~~~~l~ 104 (131)
++ +...|+.+... ...+||+|+++..+.... ....++.
T Consensus 119 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~ 198 (250)
T 1o9g_A 119 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLR 198 (250)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHH
T ss_pred cccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHH
Confidence 55 88888776321 334899999986654433 2458899
Q ss_pred HHHHhccCCcEEEEEeccC
Q psy890 105 EAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 105 ~~~~~L~p~G~l~~~~~~~ 123 (131)
++.++|+|||+++++..+.
T Consensus 199 ~~~~~LkpgG~l~~~~~~~ 217 (250)
T 1o9g_A 199 SLASALPAHAVIAVTDRSR 217 (250)
T ss_dssp HHHHHSCTTCEEEEEESSS
T ss_pred HHHHhcCCCcEEEEeCcch
Confidence 9999999999999865544
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=104.92 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=75.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-ccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~~~~ 79 (131)
.+|||+|||+|.++..+++. +.+++++|+|+.+++.++++. ++++++..|+ ..+++
T Consensus 50 ~~vLDiGcG~G~~~~~l~~~-------------~~~v~~vD~s~~~~~~a~~~~----------~~~~~~~~d~~~~~~~ 106 (226)
T 3m33_A 50 TRVLEAGCGHGPDAARFGPQ-------------AARWAAYDFSPELLKLARANA----------PHADVYEWNGKGELPA 106 (226)
T ss_dssp CEEEEESCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHC----------TTSEEEECCSCSSCCT
T ss_pred CeEEEeCCCCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHhC----------CCceEEEcchhhccCC
Confidence 36999999999999988886 468999999999999998881 2789999998 55677
Q ss_pred C-CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 80 E-SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 80 ~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+ .++||+|++. .++...+.++.+.|||||+++
T Consensus 107 ~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~ 139 (226)
T 3m33_A 107 GLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFL 139 (226)
T ss_dssp TCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEE
T ss_pred cCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEE
Confidence 7 7899999987 466778899999999999998
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=104.69 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=78.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH----hhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR----ARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+.+. ....+.. ++.++..|+.++
T Consensus 30 ~vLDiGcG~G~~~~~la~~~p-----------~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~-----~v~~~~~d~~~l 93 (218)
T 3mq2_A 30 VVLDVGTGDGKHPYKVARQNP-----------SRLVVALDADKSRMEKISAKAAAKPAKGGLP-----NLLYLWATAERL 93 (218)
T ss_dssp EEEEESCTTCHHHHHHHHHCT-----------TEEEEEEESCGGGGHHHHHHHTSCGGGTCCT-----TEEEEECCSTTC
T ss_pred EEEEecCCCCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHhhhhcCCC-----ceEEEecchhhC
Confidence 689999999999999988753 67999999999988864332 2233332 799999999998
Q ss_pred CCCCCCeeEEEEcccc-----ccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGI-----RNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l-----~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..++ |.|.....+ +++++...++.++.+.|||||++++.
T Consensus 94 ~~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~ 139 (218)
T 3mq2_A 94 PPLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVA 139 (218)
T ss_dssp CSCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEE
Confidence 876665 777643322 25567789999999999999999884
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-16 Score=102.06 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=78.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~ 78 (131)
+|||+|||+|.++..+++..+ +..+++++|+|+.+++.+.++.+... ++.++..|+.+. +
T Consensus 80 ~vLDlG~G~G~~~~~la~~~g----------~~~~v~gvD~s~~~i~~~~~~a~~~~-------~v~~~~~d~~~~~~~~ 142 (233)
T 2ipx_A 80 KVLYLGAASGTTVSHVSDIVG----------PDGLVYAVEFSHRSGRDLINLAKKRT-------NIIPVIEDARHPHKYR 142 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHHC----------TTCEEEEECCCHHHHHHHHHHHHHCT-------TEEEECSCTTCGGGGG
T ss_pred EEEEEcccCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHhhccC-------CeEEEEcccCChhhhc
Confidence 689999999999999998863 25789999999998888877766542 899999998773 3
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++... .......++.++.+.|+|||++++.
T Consensus 143 ~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~ 181 (233)
T 2ipx_A 143 MLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVIS 181 (233)
T ss_dssp GGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEE
Confidence 44678999999654 2222345588899999999999884
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-16 Score=102.85 Aligned_cols=104 Identities=12% Similarity=0.072 Sum_probs=85.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++.++ +..+++++|+++.+++.+++++...++.+ +++++..|..+. + .
T Consensus 67 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 132 (225)
T 3tr6_A 67 KVIDIGTFTGYSAIAMGLALP----------KDGTLITCDVDEKSTALAKEYWEKAGLSD----KIGLRLSPAKDTLAEL 132 (225)
T ss_dssp EEEEECCTTSHHHHHHHTTCC----------TTCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEESCHHHHHHHH
T ss_pred EEEEeCCcchHHHHHHHHhCC----------CCCEEEEEeCCHHHHHHHHHHHHHCCCCC----ceEEEeCCHHHHHHHh
Confidence 699999999999999988764 36799999999999999999998877654 799999997553 2 1
Q ss_pred CC----CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ES----DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~----~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.. ++||+|++... ..+...++.++.++|+|||++++.+..
T Consensus 133 ~~~~~~~~fD~v~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 133 IHAGQAWQYDLIYIDAD---KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp HTTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred hhccCCCCccEEEECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 11 68999997543 446778899999999999999886544
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.66 E-value=7.9e-16 Score=104.35 Aligned_cols=102 Identities=13% Similarity=0.108 Sum_probs=86.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-c-CCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-F-KVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|.++..+++.+. +..+++++|+++.+++.+++++... + +.+ ++.+...|+.+.++
T Consensus 102 ~vLdiG~G~G~~~~~l~~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~----~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 102 RVLEAGAGSGALTLSLLRAVG----------PAGQVISYEQRADHAEHARRNVSGCYGQPPD----NWRLVVSDLADSEL 167 (280)
T ss_dssp EEEEECCTTSHHHHHHHHHHC----------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCT----TEEEECSCGGGCCC
T ss_pred EEEEEcccccHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHhcCCCCC----cEEEEECchHhcCC
Confidence 699999999999999998764 3679999999999999999998765 3 222 89999999988777
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+.++||+|++ +.+++..++.++.+.|+|||++++....
T Consensus 168 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 205 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVAT 205 (280)
T ss_dssp CTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred CCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 6778999998 3456778899999999999999987644
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.6e-16 Score=105.08 Aligned_cols=101 Identities=9% Similarity=0.077 Sum_probs=85.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++....+..+ +++++..|+.+... .
T Consensus 128 ~VLDlgcG~G~~~~~la~~~------------~~~V~~vD~s~~~~~~a~~n~~~n~~~~----~v~~~~~D~~~~~~-~ 190 (278)
T 2frn_A 128 LVVDMFAGIGHLSLPIAVYG------------KAKVIAIEKDPYTFKFLVENIHLNKVED----RMSAYNMDNRDFPG-E 190 (278)
T ss_dssp EEEETTCTTTTTHHHHHHHT------------CCEEEEECCCHHHHHHHHHHHHHTTCTT----TEEEECSCTTTCCC-C
T ss_pred EEEEecccCCHHHHHHHHhC------------CCEEEEEECCHHHHHHHHHHHHHcCCCc----eEEEEECCHHHhcc-c
Confidence 68999999999999998873 2379999999999999999998877653 69999999988765 6
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++... .....++.++.+.|+|||++++.+++.
T Consensus 191 ~~fD~Vi~~~p----~~~~~~l~~~~~~LkpgG~l~~~~~~~ 228 (278)
T 2frn_A 191 NIADRILMGYV----VRTHEFIPKALSIAKDGAIIHYHNTVP 228 (278)
T ss_dssp SCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCccEEEECCc----hhHHHHHHHHHHHCCCCeEEEEEEeec
Confidence 78999998543 244677889999999999999987764
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=9.3e-16 Score=106.05 Aligned_cols=100 Identities=18% Similarity=0.136 Sum_probs=83.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++... ...+++++|+|+++++.+++++...+.. ++.+...|..+....
T Consensus 77 ~~VLDiGcG~G~~~~~la~~~~----------~~~~v~gvD~s~~~~~~a~~~~~~~g~~-----~v~~~~~d~~~~~~~ 141 (317)
T 1dl5_A 77 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVCGDGYYGVPE 141 (317)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCGG
T ss_pred CEEEEecCCchHHHHHHHHhcC----------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----CeEEEECChhhcccc
Confidence 3699999999999999988753 2367999999999999999998876654 699999998875444
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++..+++++. .++.+.|||||++++...
T Consensus 142 ~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 142 FSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred CCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 57899999999998876 567889999999988643
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=100.54 Aligned_cols=96 Identities=14% Similarity=0.069 Sum_probs=80.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. ..+++++|+++.+++.++++....+ ++.++..|..+.....
T Consensus 73 ~vLdiG~G~G~~~~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~d~~~~~~~~ 132 (231)
T 1vbf_A 73 KVLEIGTGIGYYTALIAEI-------------VDKVVSVEINEKMYNYASKLLSYYN-------NIKLILGDGTLGYEEE 132 (231)
T ss_dssp EEEEECCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTCS-------SEEEEESCGGGCCGGG
T ss_pred EEEEEcCCCCHHHHHHHHH-------------cCEEEEEeCCHHHHHHHHHHHhhcC-------CeEEEECCcccccccC
Confidence 6999999999999998886 3689999999999999999987654 6889999987632245
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..+++++. .++.+.|+|||++++.....
T Consensus 133 ~~fD~v~~~~~~~~~~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 133 KPYDRVVVWATAPTLL------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp CCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEECSS
T ss_pred CCccEEEECCcHHHHH------HHHHHHcCCCcEEEEEEcCC
Confidence 7899999999998876 36889999999999876543
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-16 Score=102.36 Aligned_cols=102 Identities=15% Similarity=0.130 Sum_probs=85.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++...+..+ ++.++..|..+. +..
T Consensus 57 ~vLdiG~G~G~~~~~la~~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 121 (233)
T 2gpy_A 57 RILEIGTAIGYSAIRMAQALP-----------EATIVSIERDERRYEEAHKHVKALGLES----RIELLFGDALQLGEKL 121 (233)
T ss_dssp EEEEECCTTSHHHHHHHHHCT-----------TCEEEEECCCHHHHHHHHHHHHHTTCTT----TEEEECSCGGGSHHHH
T ss_pred EEEEecCCCcHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECCHHHHHHhc
Confidence 699999999999999988864 5799999999999999999998776653 799999998764 322
Q ss_pred --CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 --SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 --~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.++||+|++.... .+...++..+.+.|+|||++++.+.
T Consensus 122 ~~~~~fD~I~~~~~~---~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 122 ELYPLFDVLFIDAAK---GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp TTSCCEEEEEEEGGG---SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred ccCCCccEEEECCCH---HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 4689999997664 3778899999999999999988643
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-16 Score=101.46 Aligned_cols=104 Identities=13% Similarity=0.068 Sum_probs=84.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++.++ ...+++++|+++.+++.+++++...++.+ +++++..|..+. + +
T Consensus 61 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 126 (223)
T 3duw_A 61 NILEIGTLGGYSTIWLARGLS----------SGGRVVTLEASEKHADIARSNIERANLND----RVEVRTGLALDSLQQI 126 (223)
T ss_dssp EEEEECCTTSHHHHHHHTTCC----------SSCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEESCHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHHH
Confidence 699999999999999988764 35799999999999999999998877653 799999997653 1 1
Q ss_pred C---CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 80 E---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 80 ~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
. .++||+|++... .+.....+.++.+.|+|||++++.+..
T Consensus 127 ~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 127 ENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp HHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred HhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 1 257999998654 345678899999999999988875443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=96.71 Aligned_cols=96 Identities=10% Similarity=0.084 Sum_probs=82.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++ . ..+++++|+++.+++.++++....+.. +++++..|+.+ +++.
T Consensus 38 ~vLdiG~G~G~~~~~l~~--~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~d~~~-~~~~ 98 (183)
T 2yxd_A 38 VVVDVGCGSGGMTVEIAK--R-----------CKFVYAIDYLDGAIEVTKQNLAKFNIK-----NCQIIKGRAED-VLDK 98 (183)
T ss_dssp EEEEESCCCSHHHHHHHT--T-----------SSEEEEEECSHHHHHHHHHHHHHTTCC-----SEEEEESCHHH-HGGG
T ss_pred EEEEeCCCCCHHHHHHHh--c-----------CCeEEEEeCCHHHHHHHHHHHHHcCCC-----cEEEEECCccc-cccC
Confidence 699999999999998887 2 679999999999999999998877653 79999999877 5555
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++... .+....+.++.+. |||++++....
T Consensus 99 ~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~ 133 (183)
T 2yxd_A 99 LEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIV 133 (183)
T ss_dssp CCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESC
T ss_pred CCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEecc
Confidence 78999999887 6778889999888 99999987654
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.6e-15 Score=99.94 Aligned_cols=103 Identities=19% Similarity=0.158 Sum_probs=82.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC----CCCCCCceeEEeccccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK----VPVPNPRLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~ 76 (131)
.+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++....+. .+ ++.+...|...
T Consensus 79 ~~vLDiG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~----~v~~~~~d~~~ 144 (226)
T 1i1n_A 79 AKALDVGSGSGILTACFARMVG----------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSG----RVQLVVGDGRM 144 (226)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTS----SEEEEESCGGG
T ss_pred CEEEEEcCCcCHHHHHHHHHhC----------CCcEEEEEeCCHHHHHHHHHHHHhhcccccCCC----cEEEEECCccc
Confidence 3699999999999999988764 246899999999999999998876432 11 78999999876
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
......+||+|++...++++. .++.+.|+|||++++...+.
T Consensus 145 ~~~~~~~fD~i~~~~~~~~~~------~~~~~~LkpgG~lv~~~~~~ 185 (226)
T 1i1n_A 145 GYAEEAPYDAIHVGAAAPVVP------QALIDQLKPGGRLILPVGPA 185 (226)
T ss_dssp CCGGGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEEEESCT
T ss_pred CcccCCCcCEEEECCchHHHH------HHHHHhcCCCcEEEEEEecC
Confidence 544457899999988876553 57889999999998876543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.6e-16 Score=108.23 Aligned_cols=102 Identities=11% Similarity=0.076 Sum_probs=84.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++...+. ..+++..|..+.. .
T Consensus 199 ~VLDlGcG~G~~~~~la~~~~-----------~~~v~~vD~s~~~l~~a~~~~~~~~~------~~~~~~~d~~~~~--~ 259 (343)
T 2pjd_A 199 KVLDVGCGAGVLSVAFARHSP-----------KIRLTLCDVSAPAVEASRATLAANGV------EGEVFASNVFSEV--K 259 (343)
T ss_dssp BCCBTTCTTSHHHHHHHHHCT-----------TCBCEEEESBHHHHHHHHHHHHHTTC------CCEEEECSTTTTC--C
T ss_pred eEEEecCccCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHHhCC------CCEEEEccccccc--c
Confidence 689999999999999988743 56899999999999999999877553 4567778876543 5
Q ss_pred CCeeEEEEcccccc-----ccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRN-----VTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~-----~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++..+|+ ..+...++.++.++|+|||.++++...
T Consensus 260 ~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 305 (343)
T 2pjd_A 260 GRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (343)
T ss_dssp SCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEET
T ss_pred CCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEcC
Confidence 68999999988875 345788999999999999999987644
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.2e-17 Score=107.84 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=86.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|..+..+++.++ ...+++++|+++.+++.++++++..+..+ +++++.+|+.+.. ..
T Consensus 63 ~VLDiG~G~G~~t~~la~~~~----------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~----~i~~~~gda~~~l~~~ 128 (242)
T 3r3h_A 63 KVLELGTFTGYSALAMSLALP----------DDGQVITCDINEGWTKHAHPYWREAKQEH----KIKLRLGPALDTLHSL 128 (242)
T ss_dssp EEEEEESCCSHHHHHHHHTSC----------TTCEEEEEECCCSSCCCSHHHHHHTTCTT----TEEEEESCHHHHHHHH
T ss_pred EEEEeeCCcCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHHH
Confidence 699999999999999998764 36799999999999999999998877664 8999999976642 11
Q ss_pred -----CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 -----SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 -----~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++... ..+...++.++.++|+|||++++-+..
T Consensus 129 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 172 (242)
T 3r3h_A 129 LNEGGEHQFDFIFIDAD---KTNYLNYYELALKLVTPKGLIAIDNIF 172 (242)
T ss_dssp HHHHCSSCEEEEEEESC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred hhccCCCCEeEEEEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCc
Confidence 478999998654 456678899999999999999885544
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-17 Score=106.54 Aligned_cols=104 Identities=17% Similarity=0.076 Sum_probs=65.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++...+. +++++..|+.+ +++.
T Consensus 33 ~vLDiG~G~G~~~~~l~~~~~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~-~~~~ 94 (215)
T 4dzr_A 33 RVIDVGTGSGCIAVSIALACP-----------GVSVTAVDLSMDALAVARRNAERFGA------VVDWAAADGIE-WLIE 94 (215)
T ss_dssp EEEEEESSBCHHHHHHHHHCT-----------TEEEEEEECC-------------------------CCHHHHHH-HHHH
T ss_pred EEEEecCCHhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHhCC------ceEEEEcchHh-hhhh
Confidence 689999999999999998753 57999999999999999998876542 57788888766 4343
Q ss_pred -----CCeeEEEEccccccccC--------------------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 -----DSYSAYTIAFGIRNVTR--------------------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 -----~~~D~i~~~~~l~~~~~--------------------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++...+.... ...++.++.++|+|||++++.++..
T Consensus 95 ~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 167 (215)
T 4dzr_A 95 RAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH 167 (215)
T ss_dssp HHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT
T ss_pred hhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 78999999655433221 1678889999999999966666543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.4e-15 Score=107.38 Aligned_cols=106 Identities=16% Similarity=0.097 Sum_probs=84.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+|+.+++.++++....+..+. .+++++..|..+ +++.
T Consensus 225 ~VLDlGcG~G~~s~~la~~~p-----------~~~V~gvD~s~~al~~Ar~n~~~ngl~~~--~~v~~~~~D~~~-~~~~ 290 (375)
T 4dcm_A 225 EIVDLGCGNGVIGLTLLDKNP-----------QAKVVFVDESPMAVASSRLNVETNMPEAL--DRCEFMINNALS-GVEP 290 (375)
T ss_dssp EEEEETCTTCHHHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHHHHHCGGGG--GGEEEEECSTTT-TCCT
T ss_pred eEEEEeCcchHHHHHHHHHCC-----------CCEEEEEECcHHHHHHHHHHHHHcCCCcC--ceEEEEechhhc-cCCC
Confidence 699999999999999998853 67999999999999999999887654310 147889999876 4566
Q ss_pred CCeeEEEEcccccccc-----CHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
++||+|+++..+++.. ....++.++.+.|+|||+++++..
T Consensus 291 ~~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~n 335 (375)
T 4dcm_A 291 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVAN 335 (375)
T ss_dssp TCEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEEE
Confidence 7899999998887532 234789999999999999998653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-15 Score=103.84 Aligned_cols=101 Identities=14% Similarity=0.117 Sum_probs=82.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++...+ ..+++++|+|+.+++.++++....+.. ++.++..|+.+. ++.
T Consensus 112 ~vLDlG~GsG~~~~~la~~~~-----------~~~v~~vD~s~~~l~~a~~n~~~~~~~-----~v~~~~~d~~~~-~~~ 174 (276)
T 2b3t_A 112 RILDLGTGTGAIALALASERP-----------DCEIIAVDRMPDAVSLAQRNAQHLAIK-----NIHILQSDWFSA-LAG 174 (276)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEEECCSTTGG-GTT
T ss_pred EEEEecCCccHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEEcchhhh-ccc
Confidence 699999999999999988754 679999999999999999998876654 799999998763 335
Q ss_pred CCeeEEEEccccccc-------------------------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNV-------------------------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~-------------------------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|+++...... .....++.++.++|+|||++++.
T Consensus 175 ~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~ 237 (276)
T 2b3t_A 175 QQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLE 237 (276)
T ss_dssp CCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred CCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 689999997433221 23467889999999999999874
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=97.72 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=83.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+..+ ++.+...|+.+ +++
T Consensus 35 ~~vldiG~G~G~~~~~l~~~-------------~~~v~~~D~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~-~~~ 96 (192)
T 1l3i_A 35 DVAVDVGCGTGGVTLELAGR-------------VRRVYAIDRNPEAISTTEMNLQRHGLGD----NVTLMEGDAPE-ALC 96 (192)
T ss_dssp CEEEEESCTTSHHHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTCCT----TEEEEESCHHH-HHT
T ss_pred CEEEEECCCCCHHHHHHHHh-------------cCEEEEEECCHHHHHHHHHHHHHcCCCc----ceEEEecCHHH-hcc
Confidence 36999999999999988775 3689999999999999999988776533 78999998766 222
Q ss_pred C-CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 S-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
. ++||+|++...++ +....+.++.+.|+|||++++....
T Consensus 97 ~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~ 136 (192)
T 1l3i_A 97 KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (192)
T ss_dssp TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred cCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecC
Confidence 2 5899999987654 5688899999999999999987654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.6e-16 Score=110.15 Aligned_cols=98 Identities=11% Similarity=0.058 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++. ++++++..|+.+ +++.
T Consensus 212 ~vLDvG~G~G~~~~~l~~~~~-----------~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~~~ 267 (372)
T 1fp1_D 212 TLVDVGGGSGRNLELIISKYP-----------LIKGINFDL-PQVIENAPPL-----------SGIEHVGGDMFA-SVPQ 267 (372)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTT-CCCC
T ss_pred EEEEeCCCCcHHHHHHHHHCC-----------CCeEEEeCh-HHHHHhhhhc-----------CCCEEEeCCccc-CCCC
Confidence 699999999999999998864 678999999 8888766531 179999999877 5543
Q ss_pred CCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
||+|++.+++|++++.. .++.++++.|+|||++++.|...+.
T Consensus 268 --~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 311 (372)
T 1fp1_D 268 --GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 311 (372)
T ss_dssp --EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred --CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCC
Confidence 99999999999999877 9999999999999999998876544
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.3e-16 Score=108.91 Aligned_cols=98 Identities=13% Similarity=0.081 Sum_probs=82.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++. ++++++..|+.+ +++.
T Consensus 206 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~d~~~-~~p~ 261 (368)
T 3reo_A 206 TIVDVGGGTGAVASMIVAKYP-----------SINAINFDL-PHVIQDAPAF-----------SGVEHLGGDMFD-GVPK 261 (368)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTT-CCCC
T ss_pred EEEEeCCCcCHHHHHHHHhCC-----------CCEEEEEeh-HHHHHhhhhc-----------CCCEEEecCCCC-CCCC
Confidence 699999999999999999875 678999999 7777665421 289999999876 5554
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
. |+|++.+++|++++. .++|+++++.|+|||++++.|...+.
T Consensus 262 ~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 305 (368)
T 3reo_A 262 G--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPP 305 (368)
T ss_dssp C--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCS
T ss_pred C--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 3 999999999999764 48899999999999999999877554
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=104.31 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=77.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC-HHHHHHH---HHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN-RAMLDVG---EQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
+|||+|||+|..+..+++..+ ..+++|+|+| +.|++.| +++....++. ++.+...|...+
T Consensus 27 ~vLDiGCG~G~~~~~la~~~~-----------~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~-----~v~~~~~d~~~l 90 (225)
T 3p2e_A 27 VHIDLGTGDGRNIYKLAINDQ-----------NTFYIGIDPVKENLFDISKKIIKKPSKGGLS-----NVVFVIAAAESL 90 (225)
T ss_dssp EEEEETCTTSHHHHHHHHTCT-----------TEEEEEECSCCGGGHHHHHHHTSCGGGTCCS-----SEEEECCBTTBC
T ss_pred EEEEEeccCcHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHHHHHcCCC-----CeEEEEcCHHHh
Confidence 689999999999998886532 6789999999 7777666 7666655543 799999999887
Q ss_pred CCC-CCCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcEEEE
Q psy890 78 PIE-SDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~-~~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+.. .+.+|.|.+++.+... .+....+.+++++|||||++++
T Consensus 91 ~~~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i 137 (225)
T 3p2e_A 91 PFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEF 137 (225)
T ss_dssp CGGGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEE
T ss_pred hhhccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEE
Confidence 532 2567777776543321 2345789999999999999988
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=4.6e-16 Score=108.90 Aligned_cols=98 Identities=13% Similarity=0.063 Sum_probs=83.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+ +.+++.+++ .. +++++..|+.+ +++
T Consensus 191 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~----~~-------~v~~~~~d~~~-~~p- 245 (352)
T 1fp2_A 191 SIVDVGGGTGTTAKIICETFP-----------KLKCIVFDR-PQVVENLSG----SN-------NLTYVGGDMFT-SIP- 245 (352)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHTTCCC----BT-------TEEEEECCTTT-CCC-
T ss_pred eEEEeCCCccHHHHHHHHHCC-----------CCeEEEeeC-HHHHhhccc----CC-------CcEEEeccccC-CCC-
Confidence 699999999999999998864 678999999 888877653 11 69999999866 444
Q ss_pred CCeeEEEEccccccccCHH--HHHHHHHHhccC---CcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRID--KALSEAYRVLKP---GGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p---~G~l~~~~~~~~~ 125 (131)
.||+|++.+++|++++.. .+++++++.|+| ||++++.+...+.
T Consensus 246 -~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 293 (352)
T 1fp2_A 246 -NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 293 (352)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred -CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCC
Confidence 399999999999998877 999999999999 9999999876543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=102.18 Aligned_cols=95 Identities=19% Similarity=0.212 Sum_probs=80.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ +.+++++|+|+.+++.++++.. ++.+...|...+++..
T Consensus 88 ~vLdiG~G~G~~~~~l~~~~~-----------~~~v~~vD~s~~~~~~a~~~~~----------~~~~~~~d~~~~~~~~ 146 (269)
T 1p91_A 88 AVLDIGCGEGYYTHAFADALP-----------EITTFGLDVSKVAIKAAAKRYP----------QVTFCVASSHRLPFSD 146 (269)
T ss_dssp EEEEETCTTSTTHHHHHHTCT-----------TSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTSCSBCT
T ss_pred EEEEECCCCCHHHHHHHHhCC-----------CCeEEEEeCCHHHHHHHHHhCC----------CcEEEEcchhhCCCCC
Confidence 699999999999999988753 5689999999999999987641 6889999998888777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++.+... .+.++.++|+|||++++......
T Consensus 147 ~~fD~v~~~~~~~-------~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 147 TSMDAIIRIYAPC-------KAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp TCEEEEEEESCCC-------CHHHHHHHEEEEEEEEEEEECTT
T ss_pred CceeEEEEeCChh-------hHHHHHHhcCCCcEEEEEEcCHH
Confidence 8999999876532 47889999999999999876543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.64 E-value=2.3e-15 Score=100.59 Aligned_cols=102 Identities=22% Similarity=0.155 Sum_probs=80.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--------cCCCCCCCceeEEecc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--------FKVPVPNPRLRFLEAN 73 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~d 73 (131)
.|||+|||+|.++..+++..+ ..+++++|+|+.+++.+++++... +.. ++.++..|
T Consensus 52 ~vLDiGcG~G~~~~~la~~~~-----------~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~-----nv~~~~~D 115 (246)
T 2vdv_E 52 TIADIGCGFGGLMIDLSPAFP-----------EDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQ-----NINVLRGN 115 (246)
T ss_dssp EEEEETCTTSHHHHHHHHHST-----------TSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTT-----TEEEEECC
T ss_pred EEEEEcCCCCHHHHHHHHhCC-----------CCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCC-----cEEEEecc
Confidence 589999999999999988753 568999999999999999887654 332 79999999
Q ss_pred ccc-CC--CCCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEE
Q psy890 74 AEE-LP--IESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 74 ~~~-~~--~~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+ ++ +...++|.|+..+.-.+.... ..++.++.++|+|||++++.
T Consensus 116 ~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~ 172 (246)
T 2vdv_E 116 AMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI 172 (246)
T ss_dssp TTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence 876 44 567789999865432222111 47899999999999999885
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=109.27 Aligned_cols=109 Identities=8% Similarity=-0.053 Sum_probs=83.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHH-------HHHhhhccCCCCCCCceeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG-------EQRARDLFKVPVPNPRLRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~d 73 (131)
.+|||+|||+|..+..+++..+ ..+++|+|+++.+++.| ++++...++.. .+++++.+|
T Consensus 244 ~~VLDLGCGsG~la~~LA~~~g-----------~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~---~nV~~i~gD 309 (433)
T 1u2z_A 244 DTFMDLGSGVGNCVVQAALECG-----------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL---NNVEFSLKK 309 (433)
T ss_dssp CEEEEESCTTSHHHHHHHHHHC-----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC---CCEEEEESS
T ss_pred CEEEEeCCCcCHHHHHHHHHCC-----------CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCC---CceEEEEcC
Confidence 3699999999999999998764 56899999999999988 77777655321 178888765
Q ss_pred cccC--CC--CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 74 AEEL--PI--ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 74 ~~~~--~~--~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.... ++ ..++||+|+++..+ +.++....+.++.+.|||||++++.+.-.+
T Consensus 310 ~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~f~p 363 (433)
T 1u2z_A 310 SFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKSLRS 363 (433)
T ss_dssp CSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSCSSC
T ss_pred ccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeeccCC
Confidence 3321 12 23679999987665 346788889999999999999998754433
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2e-15 Score=105.65 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=83.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +..+++++|+|+ ++..++++++..++.+ +++++..|+.+.+.+
T Consensus 52 ~~VLDiGcGtG~ls~~la~~------------g~~~V~~vD~s~-~~~~a~~~~~~~~l~~----~v~~~~~d~~~~~~~ 114 (348)
T 2y1w_A 52 KIVLDVGCGSGILSFFAAQA------------GARKIYAVEAST-MAQHAEVLVKSNNLTD----RIVVIPGKVEEVSLP 114 (348)
T ss_dssp CEEEEETCTTSHHHHHHHHT------------TCSEEEEEECST-HHHHHHHHHHHTTCTT----TEEEEESCTTTCCCS
T ss_pred CEEEEcCCCccHHHHHHHhC------------CCCEEEEECCHH-HHHHHHHHHHHcCCCC----cEEEEEcchhhCCCC
Confidence 36999999999999988775 256899999996 8899999888777654 899999999887654
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|++....+++. .....+.++.+.|+|||++++
T Consensus 115 -~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~ 153 (348)
T 2y1w_A 115 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 153 (348)
T ss_dssp -SCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEES
T ss_pred -CceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEEE
Confidence 5799999987766553 566788899999999999974
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=102.81 Aligned_cols=101 Identities=16% Similarity=0.138 Sum_probs=85.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++.+. +..+++++|+++.+++.++++....+..+ ++++...|+.+. ++.
T Consensus 115 ~VLDiG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~-~~~ 179 (277)
T 1o54_A 115 RIIDTGVGSGAMCAVLARAVG----------SSGKVFAYEKREEFAKLAESNLTKWGLIE----RVTIKVRDISEG-FDE 179 (277)
T ss_dssp EEEEECCTTSHHHHHHHHHTT----------TTCEEEEECCCHHHHHHHHHHHHHTTCGG----GEEEECCCGGGC-CSC
T ss_pred EEEEECCcCCHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHcCCCC----CEEEEECCHHHc-ccC
Confidence 699999999999999988753 36799999999999999999988766533 799999998775 556
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++. .+++..++.++.+.|+|||++++....
T Consensus 180 ~~~D~V~~~-----~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 180 KDVDALFLD-----VPDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp CSEEEEEEC-----CSCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred CccCEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 789999983 466778899999999999999987653
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.7e-16 Score=108.06 Aligned_cols=98 Identities=9% Similarity=0.053 Sum_probs=82.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.++..+++. ++++++..|+.+ +++.
T Consensus 204 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~~-----------~~v~~~~~D~~~-~~p~ 259 (364)
T 3p9c_A 204 TLVDVGGGVGATVAAIAAHYP-----------TIKGVNFDL-PHVISEAPQF-----------PGVTHVGGDMFK-EVPS 259 (364)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHTTCCCC-----------TTEEEEECCTTT-CCCC
T ss_pred EEEEeCCCCCHHHHHHHHHCC-----------CCeEEEecC-HHHHHhhhhc-----------CCeEEEeCCcCC-CCCC
Confidence 699999999999999999875 678999999 7776655421 289999999887 6654
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
. |+|++.+++|++++ ..++|+++++.|+|||++++.|...+.
T Consensus 260 ~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 303 (364)
T 3p9c_A 260 G--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPV 303 (364)
T ss_dssp C--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCS
T ss_pred C--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 3 99999999999864 468899999999999999999877554
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8e-16 Score=103.05 Aligned_cols=102 Identities=14% Similarity=0.079 Sum_probs=84.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++.++ +..+++++|+++.+++.++++++..++.+ +++++.+|..+. + +
T Consensus 82 ~VLeiG~G~G~~~~~la~~~~----------~~~~v~~iD~s~~~~~~a~~~~~~~g~~~----~i~~~~gda~~~l~~l 147 (247)
T 1sui_A 82 NTMEIGVYTGYSLLATALAIP----------EDGKILAMDINKENYELGLPVIKKAGVDH----KIDFREGPALPVLDEM 147 (247)
T ss_dssp EEEEECCGGGHHHHHHHHHSC----------TTCEEEEEESCCHHHHHHHHHHHHTTCGG----GEEEEESCHHHHHHHH
T ss_pred EEEEeCCCcCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----CeEEEECCHHHHHHHH
Confidence 699999999999999999864 36799999999999999999998876643 799999997653 2 2
Q ss_pred -----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 -----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 -----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|++... ..+....+.++.++|+|||++++-+
T Consensus 148 ~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 148 IKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp HHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred HhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCCCeEEEEec
Confidence 1478999998653 3467888999999999999998744
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.63 E-value=5e-15 Score=97.65 Aligned_cols=98 Identities=11% Similarity=0.015 Sum_probs=78.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++..+ +..+++++|+++.+++.++++.+... +++++..|+....
T Consensus 76 ~vLDlG~G~G~~~~~la~~~~----------~~~~v~~vD~s~~~~~~~~~~~~~~~-------~v~~~~~d~~~~~~~~ 138 (227)
T 1g8a_A 76 SVLYLGIASGTTASHVSDIVG----------WEGKIFGIEFSPRVLRELVPIVEERR-------NIVPILGDATKPEEYR 138 (227)
T ss_dssp EEEEETTTSTTHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHSSCT-------TEEEEECCTTCGGGGT
T ss_pred EEEEEeccCCHHHHHHHHHhC----------CCeEEEEEECCHHHHHHHHHHHhccC-------CCEEEEccCCCcchhh
Confidence 699999999999999998864 24689999999999999988876542 8999999987632
Q ss_pred CCCCCeeEEEEccccccccCH-HHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++... .++. ...+.++.+.|+|||++++.
T Consensus 139 ~~~~~~D~v~~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 139 ALVPKVDVIFEDVA---QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp TTCCCEEEEEECCC---STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccCCceEEEECCC---CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 12358999998654 2333 34499999999999999886
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.7e-15 Score=103.06 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=85.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.+++++...+.. ++.++..|....+...
T Consensus 121 ~VLDlg~G~G~~t~~la~~~~----------~~~~v~avD~s~~~l~~a~~~~~~~g~~-----~v~~~~~D~~~~~~~~ 185 (315)
T 1ixk_A 121 IVADMAAAPGGKTSYLAQLMR----------NDGVIYAFDVDENRLRETRLNLSRLGVL-----NVILFHSSSLHIGELN 185 (315)
T ss_dssp EEEECCSSCSHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHHTCC-----SEEEESSCGGGGGGGC
T ss_pred EEEEeCCCCCHHHHHHHHHhC----------CCCEEEEEcCCHHHHHHHHHHHHHhCCC-----eEEEEECChhhccccc
Confidence 699999999999999998764 3578999999999999999999887654 7999999988765445
Q ss_pred CCeeEEEEccc------cccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFG------IRNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++... ++..++ ...++.++.++|||||++++..++.
T Consensus 186 ~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~ 249 (315)
T 1ixk_A 186 VEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 249 (315)
T ss_dssp CCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred ccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence 68999998532 222121 1478999999999999999876654
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=101.73 Aligned_cols=101 Identities=12% Similarity=0.076 Sum_probs=85.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++.+..++. ++.++.+|+.+.+. .
T Consensus 122 ~VLDlgcG~G~~s~~la~~~~-----------~~~V~~vD~s~~av~~a~~n~~~n~l~-----~~~~~~~d~~~~~~-~ 184 (272)
T 3a27_A 122 VVVDMFAGIGYFTIPLAKYSK-----------PKLVYAIEKNPTAYHYLCENIKLNKLN-----NVIPILADNRDVEL-K 184 (272)
T ss_dssp EEEETTCTTTTTHHHHHHHTC-----------CSEEEEEECCHHHHHHHHHHHHHTTCS-----SEEEEESCGGGCCC-T
T ss_pred EEEEecCcCCHHHHHHHHhCC-----------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CEEEEECChHHcCc-c
Confidence 689999999999999988753 468999999999999999999887664 78899999887733 5
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++.... +....+.++.+.|+|||++++.+...
T Consensus 185 ~~~D~Vi~d~p~----~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 185 DVADRVIMGYVH----KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp TCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred CCceEEEECCcc----cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 689999987653 56678899999999999999877654
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=105.78 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=81.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|-++..+++. +..+|+++|.|+ ++..|++.++.+++.+ +++++..+++++.++
T Consensus 86 ~VLDvG~GtGiLs~~Aa~a------------GA~~V~ave~s~-~~~~a~~~~~~n~~~~----~i~~i~~~~~~~~lp- 147 (376)
T 4hc4_A 86 TVLDVGAGTGILSIFCAQA------------GARRVYAVEASA-IWQQAREVVRFNGLED----RVHVLPGPVETVELP- 147 (376)
T ss_dssp EEEEETCTTSHHHHHHHHT------------TCSEEEEEECST-THHHHHHHHHHTTCTT----TEEEEESCTTTCCCS-
T ss_pred EEEEeCCCccHHHHHHHHh------------CCCEEEEEeChH-HHHHHHHHHHHcCCCc----eEEEEeeeeeeecCC-
Confidence 6899999999998877665 356899999985 8899999999888875 899999999988765
Q ss_pred CCeeEEEEcc---ccccccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAF---GIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~---~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+++|+|++-+ .+.+-..+..++....++|+|||.++
T Consensus 148 e~~DvivsE~~~~~l~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 148 EQVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp SCEEEEECCCCBTTBTTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ccccEEEeecccccccccchhhhHHHHHHhhCCCCceEC
Confidence 6799999843 34444577888888999999999876
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-16 Score=97.35 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=80.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|.++..+++..+ +..+++++|+++ ++.. . ++.+...|+.+.+
T Consensus 25 ~vLd~G~G~G~~~~~l~~~~~----------~~~~v~~~D~~~-~~~~--------~-------~~~~~~~d~~~~~~~~ 78 (180)
T 1ej0_A 25 TVVDLGAAPGGWSQYVVTQIG----------GKGRIIACDLLP-MDPI--------V-------GVDFLQGDFRDELVMK 78 (180)
T ss_dssp EEEEESCTTCHHHHHHHHHHC----------TTCEEEEEESSC-CCCC--------T-------TEEEEESCTTSHHHHH
T ss_pred eEEEeCCCCCHHHHHHHHHhC----------CCCeEEEEECcc-cccc--------C-------cEEEEEcccccchhhh
Confidence 689999999999999988863 257999999998 5421 1 7889999988765
Q ss_pred -----CCCCCeeEEEEccccccccCH-----------HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 -----IESDSYSAYTIAFGIRNVTRI-----------DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~~-----------~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++.++||+|++...+++.... ...+.++.++|+|||.+++..+....
T Consensus 79 ~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 79 ALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp HHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred hhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 566789999998888777654 68899999999999999987765543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-15 Score=102.13 Aligned_cols=108 Identities=13% Similarity=0.004 Sum_probs=83.4
Q ss_pred ceeeeeccc--chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFP--GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~--G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
.|||+|||+ +.++..++.... +..+|+++|.|+.|+..+++++..... .++.|+..|+.+..
T Consensus 81 q~LDLGcG~pT~~~~~~la~~~~----------P~arVv~VD~sp~mLa~Ar~~l~~~~~-----~~~~~v~aD~~~~~~ 145 (277)
T 3giw_A 81 QFLDIGTGIPTSPNLHEIAQSVA----------PESRVVYVDNDPIVLTLSQGLLASTPE-----GRTAYVEADMLDPAS 145 (277)
T ss_dssp EEEEESCCSCCSSCHHHHHHHHC----------TTCEEEEEECCHHHHHTTHHHHCCCSS-----SEEEEEECCTTCHHH
T ss_pred EEEEeCCCCCcccHHHHHHHHHC----------CCCEEEEEeCChHHHHHHHHHhccCCC-----CcEEEEEecccChhh
Confidence 489999997 444555555442 368999999999999999998865321 17999999988752
Q ss_pred ---CC--CCCee-----EEEEccccccccC---HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 ---IE--SDSYS-----AYTIAFGIRNVTR---IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ---~~--~~~~D-----~i~~~~~l~~~~~---~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+ ...|| .|+++.++||+++ +...+.++.+.|+|||+|++.+....
T Consensus 146 ~l~~~~~~~~~D~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 146 ILDAPELRDTLDLTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp HHTCHHHHTTCCTTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred hhcccccccccCcCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 01 23454 5888999999987 56899999999999999999877654
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-15 Score=99.70 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=84.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+|||+|..+..+++.++ ...+++++|+++.+++.+++++...+..+ +++++..|..+.
T Consensus 75 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~----~i~~~~~d~~~~l~~l 140 (232)
T 3cbg_A 75 QVLEIGVFRGYSALAMALQLP----------PDGQIIACDQDPNATAIAKKYWQKAGVAE----KISLRLGPALATLEQL 140 (232)
T ss_dssp EEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCHHHHHHHHHHHHHHTCGG----GEEEEESCHHHHHHHH
T ss_pred EEEEecCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHHH
Confidence 699999999999999988764 25789999999999999999988766543 799999986542
Q ss_pred CCCC--CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 78 PIES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 78 ~~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+... ++||+|++... ..+....+.++.+.|+|||++++.+..
T Consensus 141 ~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 141 TQGKPLPEFDLIFIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp HTSSSCCCEEEEEECSC---GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred HhcCCCCCcCEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 2223 68999998654 356778899999999999999886544
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.6e-15 Score=99.09 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=80.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc-----CCCCCCCceeEEecccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-----KVPVPNPRLRFLEANAE 75 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~ 75 (131)
.+|||+|||+|..+..+++..+...+ ....+++++|+++.+++.++++....+ .. ++.++..|..
T Consensus 86 ~~VLdiG~G~G~~~~~la~~~~~~~~-----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-----~v~~~~~d~~ 155 (227)
T 1r18_A 86 ARILDVGSGSGYLTACFYRYIKAKGV-----DADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-----QLLIVEGDGR 155 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCC-----CTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-----SEEEEESCGG
T ss_pred CEEEEECCCccHHHHHHHHhcccccC-----CccCEEEEEEcCHHHHHHHHHHHHhcCccccCCC-----ceEEEECCcc
Confidence 36999999999999999887540000 002589999999999999999887643 22 7899999987
Q ss_pred cCCCCC-CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 76 ELPIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 76 ~~~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. +++. .+||+|++...++++. .++.+.|+|||++++.-.
T Consensus 156 ~-~~~~~~~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 156 K-GYPPNAPYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp G-CCGGGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred c-CCCcCCCccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 6 3333 6899999998887765 678999999999988654
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=97.12 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=76.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. . +++++|+|+.+++. . .+++++..|+.+ +++.
T Consensus 26 ~vLD~GcG~G~~~~~l~~~-------------~-~v~gvD~s~~~~~~-------~-------~~~~~~~~d~~~-~~~~ 76 (170)
T 3q87_B 26 IVLDLGTSTGVITEQLRKR-------------N-TVVSTDLNIRALES-------H-------RGGNLVRADLLC-SINQ 76 (170)
T ss_dssp EEEEETCTTCHHHHHHTTT-------------S-EEEEEESCHHHHHT-------C-------SSSCEEECSTTT-TBCG
T ss_pred eEEEeccCccHHHHHHHhc-------------C-cEEEEECCHHHHhc-------c-------cCCeEEECChhh-hccc
Confidence 6999999999999988775 5 99999999999887 1 278999999877 4555
Q ss_pred CCeeEEEEccccccccCH---------HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRI---------DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~---------~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|+++..+++.++. ...+.++.+.+ |||++++......
T Consensus 77 ~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~ 127 (170)
T 3q87_B 77 ESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEAN 127 (170)
T ss_dssp GGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGG
T ss_pred CCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCC
Confidence 789999998888765433 57788888888 9999999775543
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=96.65 Aligned_cols=100 Identities=11% Similarity=0.003 Sum_probs=75.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++|||+|||+|.++..+++..+ +..+|+++|+++.++....+...... ++.++..|+....
T Consensus 78 ~~VLDlG~GtG~~t~~la~~v~----------~~G~V~avD~s~~~l~~l~~~a~~r~-------nv~~i~~Da~~~~~~ 140 (232)
T 3id6_C 78 TKVLYLGAASGTTISHVSDIIE----------LNGKAYGVEFSPRVVRELLLVAQRRP-------NIFPLLADARFPQSY 140 (232)
T ss_dssp CEEEEETCTTSHHHHHHHHHHT----------TTSEEEEEECCHHHHHHHHHHHHHCT-------TEEEEECCTTCGGGT
T ss_pred CEEEEEeecCCHHHHHHHHHhC----------CCCEEEEEECcHHHHHHHHHHhhhcC-------CeEEEEcccccchhh
Confidence 4799999999999999998875 46799999999998766555444332 8999999987542
Q ss_pred -CCCCCeeEEEEccccccccCHHHHH-HHHHHhccCCcEEEEEe
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKAL-SEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l-~~~~~~L~p~G~l~~~~ 120 (131)
...++||+|++.... ++....+ ..+.+.|||||++++..
T Consensus 141 ~~~~~~~D~I~~d~a~---~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 141 KSVVENVDVLYVDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp TTTCCCEEEEEECCCC---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccccceEEEEecCCC---hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 124689999987553 4444444 45566999999998863
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.7e-16 Score=97.35 Aligned_cols=102 Identities=10% Similarity=0.125 Sum_probs=79.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+. +++++..|+.+. + .
T Consensus 44 ~vLD~GcG~G~~~~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~~~~ 104 (171)
T 1ws6_A 44 RFLDPFAGSGAVGLEAASE-------------GWEAVLVEKDPEAVRLLKENVRRTGL------GARVVALPVEVFLPEA 104 (171)
T ss_dssp EEEEETCSSCHHHHHHHHT-------------TCEEEEECCCHHHHHHHHHHHHHHTC------CCEEECSCHHHHHHHH
T ss_pred eEEEeCCCcCHHHHHHHHC-------------CCeEEEEeCCHHHHHHHHHHHHHcCC------ceEEEeccHHHHHHhh
Confidence 6899999999999988876 34599999999999999999877652 588899987763 2 1
Q ss_pred --CCCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccCC
Q psy890 80 --ESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 --~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~~ 124 (131)
..++||+|++...++ ......+..+. ++|+|||++++......
T Consensus 105 ~~~~~~~D~i~~~~~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~~ 151 (171)
T 1ws6_A 105 KAQGERFTVAFMAPPYA--MDLAALFGELLASGLVEAGGLYVLQHPKDL 151 (171)
T ss_dssp HHTTCCEEEEEECCCTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETTS
T ss_pred hccCCceEEEEECCCCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCcc
Confidence 134799999987665 45556666676 99999999988655443
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=102.02 Aligned_cols=106 Identities=22% Similarity=0.154 Sum_probs=86.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||+|||+|.++..++.... +..+++++|+++.+++.++++++..++. ++++...|+.+++.+.
T Consensus 206 ~vLD~gcGsG~~~ie~a~~~~----------~~~~v~g~Di~~~~i~~a~~n~~~~g~~-----~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 206 RVLDPFTGSGTIALEAASTLG----------PTSPVYAGDLDEKRLGLAREAALASGLS-----WIRFLRADARHLPRFF 270 (354)
T ss_dssp CEEESSCTTSHHHHHHHHHHC----------TTSCEEEEESCHHHHHHHHHHHHHTTCT-----TCEEEECCGGGGGGTC
T ss_pred EEEeCCCCcCHHHHHHHHhhC----------CCceEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEeCChhhCcccc
Confidence 689999999999999988762 2578999999999999999999887764 7999999999987666
Q ss_pred CCeeEEEEcccccc--cc------CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRN--VT------RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~--~~------~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..||+|+++..... .. ....++.++.+.|+|||++++....
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~ 319 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLR 319 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESC
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 77999999544322 11 1367889999999999999987654
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-15 Score=99.43 Aligned_cols=106 Identities=12% Similarity=0.021 Sum_probs=78.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC-CHHHHHHHHHHh-----hhccCCCCCCCceeEEecccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI-NRAMLDVGEQRA-----RDLFKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~-s~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~d~~ 75 (131)
+|||+|||+|.++..+++. ...+++++|+ ++.+++.++++. ...+.......++.+...+..
T Consensus 82 ~vLDlG~G~G~~~~~~a~~------------~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~ 149 (281)
T 3bzb_A 82 TVCELGAGAGLVSIVAFLA------------GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWG 149 (281)
T ss_dssp EEEETTCTTSHHHHHHHHT------------TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTT
T ss_pred eEEEecccccHHHHHHHHc------------CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCC
Confidence 6999999999999877764 2348999999 899999999998 333322000015777755543
Q ss_pred cCC--C----CCCCeeEEEEccccccccCHHHHHHHHHHhcc---C--CcEEEEE
Q psy890 76 ELP--I----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK---P--GGRFLCL 119 (131)
Q Consensus 76 ~~~--~----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~---p--~G~l~~~ 119 (131)
+.. + ..++||+|++..++++.++...++..+.++|+ | ||+++++
T Consensus 150 ~~~~~~~~~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~ 204 (281)
T 3bzb_A 150 DSPDSLQRCTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVT 204 (281)
T ss_dssp SCTHHHHHHHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred CccHHHHhhccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEE
Confidence 321 1 35789999999999999999999999999999 9 9987664
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=100.15 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=84.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++.++ ...+++++|+++.+++.++++++..++.+ +++++.+|..+. + +
T Consensus 73 ~VLeiG~G~G~~~~~la~~~~----------~~~~v~~iD~~~~~~~~a~~~~~~~g~~~----~i~~~~gda~~~l~~l 138 (237)
T 3c3y_A 73 KTIEVGVFTGYSLLLTALSIP----------DDGKITAIDFDREAYEIGLPFIRKAGVEH----KINFIESDAMLALDNL 138 (237)
T ss_dssp EEEEECCTTSHHHHHHHHHSC----------TTCEEEEEESCHHHHHHHHHHHHHTTCGG----GEEEEESCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEEcCHHHHHHHH
Confidence 699999999999999999865 36799999999999999999998877653 799999997653 2 2
Q ss_pred -----CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 -----ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 -----~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|++... ..+....+..+.+.|+|||++++-+
T Consensus 139 ~~~~~~~~~fD~I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~ 181 (237)
T 3c3y_A 139 LQGQESEGSYDFGFVDAD---KPNYIKYHERLMKLVKVGGIVAYDN 181 (237)
T ss_dssp HHSTTCTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HhccCCCCCcCEEEECCc---hHHHHHHHHHHHHhcCCCeEEEEec
Confidence 2468999998643 3466788999999999999998754
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-16 Score=108.73 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=78.8
Q ss_pred Cceeeeecc------cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc
Q psy890 1 MYILFYLVF------PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 1 ~~iLdig~G------~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
.+||||||| +|..+..+++.+. +..+++++|+|+.|. .. . ++++++.+|+
T Consensus 218 ~rVLDIGCG~~~~~~TGG~Sl~la~~~f----------P~a~V~GVDiSp~m~-------~~---~----~rI~fv~GDa 273 (419)
T 3sso_A 218 VRVLEIGVGGYKHPEWGGGSLRMWKSFF----------PRGQIYGLDIMDKSH-------VD---E----LRIRTIQGDQ 273 (419)
T ss_dssp CEEEEECCSCTTCSSCCCHHHHHHHHHC----------TTCEEEEEESSCCGG-------GC---B----TTEEEEECCT
T ss_pred CEEEEEecCCCcCCCCCHHHHHHHHHhC----------CCCEEEEEECCHHHh-------hc---C----CCcEEEEecc
Confidence 369999999 6777777776642 367999999999862 11 1 2899999999
Q ss_pred ccCCCC------CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 75 EELPIE------SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 75 ~~~~~~------~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++++. .++||+|++.. .|++.+....+.++.++|||||++++.+...
T Consensus 274 ~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~t 327 (419)
T 3sso_A 274 NDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMWT 327 (419)
T ss_dssp TCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred cccchhhhhhcccCCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEeccc
Confidence 887655 57899999874 4667788999999999999999999987763
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=4e-15 Score=102.61 Aligned_cols=106 Identities=13% Similarity=0.088 Sum_probs=83.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
++|||||||+|.++..+++..+ ..+++++|+++.+++.+++++.... . ++++++..|..+. .
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p-----------~~~v~~VEidp~vi~~Ar~~~~~~~-~----~rv~v~~~Da~~~l~~ 154 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYP-----------QSRNTVVELDAELARLSREWFDIPR-A----PRVKIRVDDARMVAES 154 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHST-----------TCEEEEEESCHHHHHHHHHHSCCCC-T----TTEEEEESCHHHHHHT
T ss_pred CEEEEEECCcCHHHHHHHHHCC-----------CcEEEEEECCHHHHHHHHHhccccC-C----CceEEEECcHHHHHhh
Confidence 3799999999999999998754 5699999999999999999886432 1 3899999997764 2
Q ss_pred CCCCCeeEEEEccccccc-c-C--HHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNV-T-R--IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~-~-~--~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.+.++||+|++....+.. + . ...++..+++.|+|||++++...+
T Consensus 155 ~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 155 FTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp CCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 345789999996543322 1 1 268899999999999999876543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=96.43 Aligned_cols=99 Identities=11% Similarity=0.088 Sum_probs=83.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+..+ ++.+...|+.+...+.
T Consensus 94 ~vldiG~G~G~~~~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~d~~~~~~~~ 156 (248)
T 2yvl_A 94 RVLEFGTGSGALLAVLSEV-------------AGEVWTFEAVEEFYKTAQKNLKKFNLGK----NVKFFNVDFKDAEVPE 156 (248)
T ss_dssp EEEEECCTTSHHHHHHHHH-------------SSEEEEECSCHHHHHHHHHHHHHTTCCT----TEEEECSCTTTSCCCT
T ss_pred EEEEeCCCccHHHHHHHHh-------------CCEEEEEecCHHHHHHHHHHHHHcCCCC----cEEEEEcChhhcccCC
Confidence 6899999999999999887 3589999999999999999988766543 7999999987754355
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++. .+++..++.++.+.|+|||++++....
T Consensus 157 ~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 157 GIFHAAFVD-----VREPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp TCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred CcccEEEEC-----CcCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 689999973 456778899999999999999887643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.7e-15 Score=102.60 Aligned_cols=105 Identities=15% Similarity=0.139 Sum_probs=79.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.++++++. ....+ ++++++..|..+...
T Consensus 98 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~---~~v~~~~~D~~~~~~ 163 (304)
T 3bwc_A 98 RVLIIGGGDGGVLREVLRHGT-----------VEHCDLVDIDGEVMEQSKQHFPQISRSLAD---PRATVRVGDGLAFVR 163 (304)
T ss_dssp EEEEEECTTSHHHHHHHTCTT-----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGC---TTEEEEESCHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHhCCC-----------CCEEEEEECCHHHHHHHHHHhHHhhcccCC---CcEEEEECcHHHHHH
Confidence 699999999999999987632 57999999999999999998742 11111 289999999877543
Q ss_pred --CCCCeeEEEEccccccccCH----HHHHHHHHHhccCCcEEEEEe
Q psy890 80 --ESDSYSAYTIAFGIRNVTRI----DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 --~~~~~D~i~~~~~l~~~~~~----~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|++....+..+.. ..++.++++.|+|||++++..
T Consensus 164 ~~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 210 (304)
T 3bwc_A 164 QTPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQG 210 (304)
T ss_dssp SSCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 46789999997665543322 688999999999999998864
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.60 E-value=6.6e-15 Score=99.92 Aligned_cols=108 Identities=10% Similarity=0.107 Sum_probs=86.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 79 (131)
.+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++....+.. ++.++..|....+.
T Consensus 85 ~~VLDlgaG~G~~t~~la~~~~----------~~~~v~avD~~~~~l~~~~~~~~~~g~~-----~v~~~~~D~~~~~~~ 149 (274)
T 3ajd_A 85 DFILDMCAAPGGKTTHLAQLMK----------NKGTIVAVEISKTRTKALKSNINRMGVL-----NTIIINADMRKYKDY 149 (274)
T ss_dssp CEEEETTCTTCHHHHHHHHHTT----------TCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCHHHHHHH
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEECCCHHHHHHHHHHHHHhCCC-----cEEEEeCChHhcchh
Confidence 3699999999999999988764 2479999999999999999999877654 79999999877643
Q ss_pred ---CCCCeeEEEEcccccc------------------ccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ---ESDSYSAYTIAFGIRN------------------VTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ---~~~~~D~i~~~~~l~~------------------~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..++||+|++...... ......++.++.++|||||++++..++.
T Consensus 150 ~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~ 214 (274)
T 3ajd_A 150 LLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSM 214 (274)
T ss_dssp HHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred hhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCC
Confidence 2568999998633221 1244788999999999999999876654
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=97.40 Aligned_cols=105 Identities=9% Similarity=0.042 Sum_probs=81.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC----CCCCCCceeEEeccccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK----VPVPNPRLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~d~~~ 76 (131)
.+|||+|||+|..+..+++..... ..+..+++++|+++.+++.++++....+. . .++.++..|...
T Consensus 82 ~~VLdiG~G~G~~~~~la~~~~~~------~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~----~~v~~~~~d~~~ 151 (227)
T 2pbf_A 82 SRAIDVGSGSGYLTVCMAIKMNVL------ENKNSYVIGLERVKDLVNFSLENIKRDKPELLKI----DNFKIIHKNIYQ 151 (227)
T ss_dssp CEEEEESCTTSHHHHHHHHHTTTT------TCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSS----TTEEEEECCGGG
T ss_pred CEEEEECCCCCHHHHHHHHHhccc------CCCCCEEEEEeCCHHHHHHHHHHHHHcCcccccc----CCEEEEECChHh
Confidence 369999999999999988874200 00135899999999999999999876552 2 179999999877
Q ss_pred CC----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 77 LP----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 77 ~~----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.. ....+||+|++...++++ +.++.+.|+|||++++.-.
T Consensus 152 ~~~~~~~~~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 152 VNEEEKKELGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp CCHHHHHHHCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred cccccCccCCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 54 445789999999888765 3778899999999988643
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.4e-15 Score=100.03 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=83.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.+++++...+... ++.++..|..+. +
T Consensus 63 ~VLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~----~v~~~~~d~~~~~~~~ 128 (239)
T 2hnk_A 63 RIIEIGTFTGYSSLCFASALP----------EDGKILCCDVSEEWTNVARKYWKENGLEN----KIFLKLGSALETLQVL 128 (239)
T ss_dssp EEEEECCTTCHHHHHHHHHSC----------TTCEEEEEESCHHHHHHHHHHHHHTTCGG----GEEEEESCHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCCC----CEEEEECCHHHHHHHH
Confidence 699999999999999998864 25799999999999999999988766542 699999986542 1
Q ss_pred ------------CCC--CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 ------------IES--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ------------~~~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
++. ++||+|++... .++....+.++.+.|+|||++++.+.
T Consensus 129 ~~~~~~~~~~~~f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 129 IDSKSAPSWASDFAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp HHCSSCCGGGTTTCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred HhhcccccccccccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 222 68999998754 44567889999999999999998653
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.7e-15 Score=98.92 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=84.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|..+..+++.++ ...+++++|+++.+++.+++++...+..+ +++++..|+.+. + +
T Consensus 72 ~vLdiG~G~G~~~~~la~~~~----------~~~~v~~vD~~~~~~~~a~~~~~~~g~~~----~i~~~~~d~~~~~~~~ 137 (229)
T 2avd_A 72 KALDLGTFTGYSALALALALP----------ADGRVVTCEVDAQPPELGRPLWRQAEAEH----KIDLRLKPALETLDEL 137 (229)
T ss_dssp EEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCSHHHHHHHHHHHHTTCTT----TEEEEESCHHHHHHHH
T ss_pred EEEEEcCCccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHCCCCC----eEEEEEcCHHHHHHHH
Confidence 699999999999999988754 35799999999999999999998776643 899999987553 1 1
Q ss_pred C--C--CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 80 E--S--DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 80 ~--~--~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. . ++||+|++... ..+....+.++.+.|+|||++++.+.
T Consensus 138 ~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 138 LAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp HHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred HhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 1 1 68999998654 34567889999999999999988654
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.2e-15 Score=108.51 Aligned_cols=100 Identities=15% Similarity=0.096 Sum_probs=82.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +..+++++|+|+ +++.+++++...++.+ +++++..|+.+.+++
T Consensus 160 ~~VLDiGcGtG~la~~la~~------------~~~~V~gvD~s~-~l~~A~~~~~~~gl~~----~v~~~~~d~~~~~~~ 222 (480)
T 3b3j_A 160 KIVLDVGCGSGILSFFAAQA------------GARKIYAVEAST-MAQHAEVLVKSNNLTD----RIVVIPGKVEEVSLP 222 (480)
T ss_dssp CEEEEESCSTTHHHHHHHHT------------TCSEEEEEECHH-HHHHHHHHHHHTTCTT----TEEEEESCTTTCCCS
T ss_pred CEEEEecCcccHHHHHHHHc------------CCCEEEEEEcHH-HHHHHHHHHHHcCCCC----cEEEEECchhhCccC
Confidence 36999999999999888764 256999999998 9999999988877654 899999999887654
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|++...++++. +....+.++.++|+|||++++
T Consensus 223 -~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 223 -EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp -SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEES
T ss_pred -CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEE
Confidence 5799999987766553 456677889999999999974
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=5.8e-15 Score=102.73 Aligned_cols=103 Identities=15% Similarity=0.144 Sum_probs=78.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc----------CCCCCCCceeEE
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF----------KVPVPNPRLRFL 70 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 70 (131)
.+|||+|||+|.++..+++..+ +..+++++|+++.+++.+++++...+ .. .+++++
T Consensus 107 ~~VLDiG~G~G~~~~~la~~~g----------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~----~~v~~~ 172 (336)
T 2b25_A 107 DTVLEAGSGSGGMSLFLSKAVG----------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWP----DNVDFI 172 (336)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCC----CCEEEE
T ss_pred CEEEEeCCCcCHHHHHHHHHhC----------CCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccC----CceEEE
Confidence 3699999999999999988764 25789999999999999999887532 11 279999
Q ss_pred ecccccC--CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 71 EANAEEL--PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 71 ~~d~~~~--~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..|+.+. +++.++||+|++.. +++...+.++.+.|+|||++++....
T Consensus 173 ~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~ 221 (336)
T 2b25_A 173 HKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVN 221 (336)
T ss_dssp ESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred ECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 9998876 35566899999853 34445789999999999999886543
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=7.9e-15 Score=97.29 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=79.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ .+++++|+++.+++.++++....+.. ++.+...|.. .+++.
T Consensus 94 ~vLdiG~G~G~~~~~la~~~~------------~~v~~vD~~~~~~~~a~~~~~~~~~~-----~v~~~~~d~~-~~~~~ 155 (235)
T 1jg1_A 94 NILEVGTGSGWNAALISEIVK------------TDVYTIERIPELVEFAKRNLERAGVK-----NVHVILGDGS-KGFPP 155 (235)
T ss_dssp CEEEECCTTSHHHHHHHHHHC------------SCEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGG-GCCGG
T ss_pred EEEEEeCCcCHHHHHHHHHhC------------CEEEEEeCCHHHHHHHHHHHHHcCCC-----CcEEEECCcc-cCCCC
Confidence 699999999999999988741 58999999999999999998876654 6889999873 23333
Q ss_pred -CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 -DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.+||+|++...++++.+ ++.+.|+|||++++.....
T Consensus 156 ~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 156 KAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp GCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEECSS
T ss_pred CCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEecC
Confidence 45999999998887763 6789999999998865433
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.7e-15 Score=105.17 Aligned_cols=98 Identities=13% Similarity=0.097 Sum_probs=82.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+ +.+++.+++ . .+++++..|+.+ +++
T Consensus 196 ~vlDvG~G~G~~~~~l~~~~p-----------~~~~~~~D~-~~~~~~a~~----~-------~~v~~~~~d~~~-~~~- 250 (358)
T 1zg3_A 196 SLVDVGGGTGGVTKLIHEIFP-----------HLKCTVFDQ-PQVVGNLTG----N-------ENLNFVGGDMFK-SIP- 250 (358)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TSEEEEEEC-HHHHSSCCC----C-------SSEEEEECCTTT-CCC-
T ss_pred EEEEECCCcCHHHHHHHHHCC-----------CCeEEEecc-HHHHhhccc----C-------CCcEEEeCccCC-CCC-
Confidence 689999999999999998864 678999999 677765543 1 169999999877 554
Q ss_pred CCeeEEEEccccccccCHH--HHHHHHHHhccC---CcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRID--KALSEAYRVLKP---GGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p---~G~l~~~~~~~~~ 125 (131)
.||+|++.+++|++++.. ++|.++++.|+| ||++++.|...+.
T Consensus 251 -~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~ 298 (358)
T 1zg3_A 251 -SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDE 298 (358)
T ss_dssp -CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECT
T ss_pred -CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCC
Confidence 499999999999999866 999999999999 9999998876543
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-15 Score=111.69 Aligned_cols=105 Identities=11% Similarity=0.114 Sum_probs=86.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
++|||||||+|.++..+++. +.+|+|+|.++.+++.|+......+.. ++.|...+++++ .
T Consensus 68 ~~vLDvGCG~G~~~~~la~~-------------ga~V~giD~~~~~i~~a~~~a~~~~~~-----~~~~~~~~~~~~~~~ 129 (569)
T 4azs_A 68 LNVLDLGCAQGFFSLSLASK-------------GATIVGIDFQQENINVCRALAEENPDF-----AAEFRVGRIEEVIAA 129 (569)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHTSTTS-----EEEEEECCHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHHhC-------------CCEEEEECCCHHHHHHHHHHHHhcCCC-----ceEEEECCHHHHhhh
Confidence 47999999999999999886 789999999999999999988765533 789999999887 3
Q ss_pred CCCCCeeEEEEccccccccCHH--HHHHHHHHhccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRNVTRID--KALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~--~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...++||+|+|..+++|++++. ..+..+.+.|+++|..++.....
T Consensus 130 ~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~ 176 (569)
T 4azs_A 130 LEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQAVILELAV 176 (569)
T ss_dssp CCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSSEEEEECCC
T ss_pred ccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccceeeEEecc
Confidence 5567899999999999998765 33556777788888766655443
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-15 Score=97.06 Aligned_cols=85 Identities=25% Similarity=0.287 Sum_probs=72.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+. .+++++|+|+. ++.+...|+.+.+++.
T Consensus 70 ~vLDiG~G~G~~~~~l~----------------~~v~~~D~s~~--------------------~~~~~~~d~~~~~~~~ 113 (215)
T 2zfu_A 70 VVADFGCGDCRLASSIR----------------NPVHCFDLASL--------------------DPRVTVCDMAQVPLED 113 (215)
T ss_dssp CEEEETCTTCHHHHHCC----------------SCEEEEESSCS--------------------STTEEESCTTSCSCCT
T ss_pred eEEEECCcCCHHHHHhh----------------ccEEEEeCCCC--------------------CceEEEeccccCCCCC
Confidence 69999999999877552 36999999885 2456778888877777
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++|+ .++..++.++.++|+|||++++.++..
T Consensus 114 ~~fD~v~~~~~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~~ 154 (215)
T 2zfu_A 114 ESVDVAVFCLSLMG-TNIRDFLEEANRVLKPGGLLKVAEVSS 154 (215)
T ss_dssp TCEEEEEEESCCCS-SCHHHHHHHHHHHEEEEEEEEEEECGG
T ss_pred CCEeEEEEehhccc-cCHHHHHHHHHHhCCCCeEEEEEEcCC
Confidence 89999999999974 889999999999999999999987654
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=99.30 Aligned_cols=105 Identities=11% Similarity=0.031 Sum_probs=82.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++.. + ..+++++|+|+.+++.++++....+... +++++..|+.+. ++
T Consensus 126 ~vLDlG~GsG~~~~~la~~-~-----------~~~v~~vDis~~al~~A~~n~~~~~l~~----~v~~~~~D~~~~-~~- 187 (284)
T 1nv8_A 126 TVADIGTGSGAIGVSVAKF-S-----------DAIVFATDVSSKAVEIARKNAERHGVSD----RFFVRKGEFLEP-FK- 187 (284)
T ss_dssp EEEEESCTTSHHHHHHHHH-S-----------SCEEEEEESCHHHHHHHHHHHHHTTCTT----SEEEEESSTTGG-GG-
T ss_pred EEEEEeCchhHHHHHHHHC-C-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----ceEEEECcchhh-cc-
Confidence 6999999999999999887 5 6799999999999999999998877653 699999998763 22
Q ss_pred CCe---eEEEEccccc-----------ccc--------CHHHHHHHHH-HhccCCcEEEEEeccCCC
Q psy890 82 DSY---SAYTIAFGIR-----------NVT--------RIDKALSEAY-RVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~---D~i~~~~~l~-----------~~~--------~~~~~l~~~~-~~L~p~G~l~~~~~~~~~ 125 (131)
++| |+|+++-... +.+ +...++.++. +.++|||++++ +++...
T Consensus 188 ~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~-e~~~~q 253 (284)
T 1nv8_A 188 EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGEDQ 253 (284)
T ss_dssp GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTTC
T ss_pred cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE-EECchH
Confidence 468 9999972211 111 1237889999 99999999986 555443
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=99.01 Aligned_cols=99 Identities=20% Similarity=0.149 Sum_probs=79.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+++.+++.++++....+. .+++...|+.+. ++.
T Consensus 123 ~VLDiGcG~G~l~~~la~~-------------g~~v~gvDi~~~~v~~a~~n~~~~~~------~v~~~~~d~~~~-~~~ 182 (254)
T 2nxc_A 123 KVLDLGTGSGVLAIAAEKL-------------GGKALGVDIDPMVLPQAEANAKRNGV------RPRFLEGSLEAA-LPF 182 (254)
T ss_dssp EEEEETCTTSHHHHHHHHT-------------TCEEEEEESCGGGHHHHHHHHHHTTC------CCEEEESCHHHH-GGG
T ss_pred EEEEecCCCcHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHHHHcCC------cEEEEECChhhc-CcC
Confidence 6999999999999887764 34999999999999999999876552 377888887652 345
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|+++...+ .....+.++.+.|+|||++++.....
T Consensus 183 ~~fD~Vv~n~~~~---~~~~~l~~~~~~LkpgG~lils~~~~ 221 (254)
T 2nxc_A 183 GPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGILK 221 (254)
T ss_dssp CCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEEG
T ss_pred CCCCEEEECCcHH---HHHHHHHHHHHHcCCCCEEEEEeecc
Confidence 6899999876543 35678999999999999999876543
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=95.13 Aligned_cols=102 Identities=11% Similarity=-0.044 Sum_probs=82.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||+|.++..+++..+ ..+++++|+++.+++.|++++...++.+ ++++..+|..+...+.
T Consensus 24 ~VlDIGtGsG~l~i~la~~~~-----------~~~V~AvDi~~~al~~A~~N~~~~gl~~----~I~~~~gD~l~~~~~~ 88 (230)
T 3lec_A 24 RLLDVGSDHAYLPIFLLQMGY-----------CDFAIAGEVVNGPYQSALKNVSEHGLTS----KIDVRLANGLSAFEEA 88 (230)
T ss_dssp EEEEETCSTTHHHHHHHHTTC-----------EEEEEEEESSHHHHHHHHHHHHHTTCTT----TEEEEECSGGGGCCGG
T ss_pred EEEEECCchHHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECchhhccccc
Confidence 689999999999999988642 5689999999999999999999988775 8999999987754444
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+..++.. .-...++.+..+.|+++|++++..
T Consensus 89 ~~~D~IviaGmGg--~lI~~IL~~~~~~l~~~~~lIlqp 125 (230)
T 3lec_A 89 DNIDTITICGMGG--RLIADILNNDIDKLQHVKTLVLQP 125 (230)
T ss_dssp GCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred cccCEEEEeCCch--HHHHHHHHHHHHHhCcCCEEEEEC
Confidence 4799988654322 235677888889999999988754
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.3e-14 Score=101.46 Aligned_cols=109 Identities=17% Similarity=0.210 Sum_probs=87.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..++...+ ...+++++|+++.++..+++++...+.. ++.++..|....+
T Consensus 261 ~~VLDlgaG~G~~t~~la~~~~----------~~~~v~a~D~s~~~l~~~~~~~~~~g~~-----~v~~~~~D~~~~~~~ 325 (450)
T 2yxl_A 261 ETVVDLAAAPGGKTTHLAELMK----------NKGKIYAFDVDKMRMKRLKDFVKRMGIK-----IVKPLVKDARKAPEI 325 (450)
T ss_dssp CEEEESSCTTCHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHTTCC-----SEEEECSCTTCCSSS
T ss_pred CEEEEeCCCccHHHHHHHHHcC----------CCCEEEEEcCCHHHHHHHHHHHHHcCCC-----cEEEEEcChhhcchh
Confidence 3699999999999999998864 2378999999999999999999877654 7999999988765
Q ss_pred CCCCCeeEEEEcc------ccccccCH----------------HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 IESDSYSAYTIAF------GIRNVTRI----------------DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ~~~~~~D~i~~~~------~l~~~~~~----------------~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++.++||+|++.. .++..++. ..++.++.++|||||++++..++..
T Consensus 326 ~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~ 393 (450)
T 2yxl_A 326 IGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF 393 (450)
T ss_dssp SCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred hccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 4447899999732 22322222 5789999999999999998877654
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-15 Score=98.48 Aligned_cols=99 Identities=12% Similarity=0.097 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~ 78 (131)
+|||+|||+|..+..+++.+.... +..+|+++|+++.+++.++. .. .+++++.+|..+. +
T Consensus 84 ~VLDiG~GtG~~t~~la~~~~~~~-------~~~~V~gvD~s~~~l~~a~~------~~----~~v~~~~gD~~~~~~l~ 146 (236)
T 2bm8_A 84 TIVELGVYNGGSLAWFRDLTKIMG-------IDCQVIGIDRDLSRCQIPAS------DM----ENITLHQGDCSDLTTFE 146 (236)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT-------CCCEEEEEESCCTTCCCCGG------GC----TTEEEEECCSSCSGGGG
T ss_pred EEEEEeCCCCHHHHHHHHhhhhcC-------CCCEEEEEeCChHHHHHHhc------cC----CceEEEECcchhHHHHH
Confidence 699999999999999988621000 36799999999999887761 11 2899999998874 4
Q ss_pred CC-CCCeeEEEEccccccccCHHHHHHHHHH-hccCCcEEEEEe
Q psy890 79 IE-SDSYSAYTIAFGIRNVTRIDKALSEAYR-VLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~-~~~~D~i~~~~~l~~~~~~~~~l~~~~~-~L~p~G~l~~~~ 120 (131)
.. ..+||+|++... | .+....+.++.+ .|+|||++++.+
T Consensus 147 ~~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d 187 (236)
T 2bm8_A 147 HLREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIED 187 (236)
T ss_dssp GGSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECS
T ss_pred hhccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEe
Confidence 32 347999998665 3 377889999997 999999998854
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.1e-14 Score=93.96 Aligned_cols=101 Identities=14% Similarity=0.019 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+|+|||+|.++..+++..+ ..+++++|+++.+++.|+++....++.+ ++++..+|.... ++.
T Consensus 18 ~VlDIGtGsG~l~i~la~~~~-----------~~~V~avDi~~~al~~A~~N~~~~gl~~----~i~~~~~d~l~~-l~~ 81 (225)
T 3kr9_A 18 ILLDVGSDHAYLPIELVERGQ-----------IKSAIAGEVVEGPYQSAVKNVEAHGLKE----KIQVRLANGLAA-FEE 81 (225)
T ss_dssp EEEEETCSTTHHHHHHHHTTS-----------EEEEEEEESSHHHHHHHHHHHHHTTCTT----TEEEEECSGGGG-CCG
T ss_pred EEEEeCCCcHHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCc----eEEEEECchhhh-ccc
Confidence 689999999999999988643 5689999999999999999999988775 799999997542 222
Q ss_pred -CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 -DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 -~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+...+-. .-...++.+..+.|+++|++++..
T Consensus 82 ~~~~D~IviaG~Gg--~~i~~Il~~~~~~L~~~~~lVlq~ 119 (225)
T 3kr9_A 82 TDQVSVITIAGMGG--RLIARILEEGLGKLANVERLILQP 119 (225)
T ss_dssp GGCCCEEEEEEECH--HHHHHHHHHTGGGCTTCCEEEEEE
T ss_pred CcCCCEEEEcCCCh--HHHHHHHHHHHHHhCCCCEEEEEC
Confidence 3699988754321 225778999999999999987743
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=92.83 Aligned_cols=96 Identities=10% Similarity=0.089 Sum_probs=73.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCC-CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+|||+|||+|.++..+++..+ . ..+++++|+|+.. .. +++.++..|+.+.+
T Consensus 25 ~vLDlGcG~G~~~~~l~~~~~----------~~~~~v~gvD~s~~~-----------~~-----~~v~~~~~d~~~~~~~ 78 (201)
T 2plw_A 25 IILDIGCYPGSWCQVILERTK----------NYKNKIIGIDKKIMD-----------PI-----PNVYFIQGEIGKDNMN 78 (201)
T ss_dssp EEEEESCTTCHHHHHHHHHTT----------TSCEEEEEEESSCCC-----------CC-----TTCEEEECCTTTTSSC
T ss_pred EEEEeCCCCCHHHHHHHHHcC----------CCCceEEEEeCCccC-----------CC-----CCceEEEccccchhhh
Confidence 689999999999999998753 1 4789999999821 11 27888888887755
Q ss_pred -----------------------CCCCCeeEEEEccccccc----cCH-------HHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 -----------------------IESDSYSAYTIAFGIRNV----TRI-------DKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 -----------------------~~~~~~D~i~~~~~l~~~----~~~-------~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++..+||+|++...+++. .+. ..++.++.++|+|||.+++..+..
T Consensus 79 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 157 (201)
T 2plw_A 79 NIKNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLG 157 (201)
T ss_dssp CC-----------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred hhccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCC
Confidence 455789999998776653 121 247888999999999998865544
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-14 Score=100.52 Aligned_cols=105 Identities=14% Similarity=0.097 Sum_probs=82.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--c-CCCCCCCceeEEecccccC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--F-KVPVPNPRLRFLEANAEEL- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~d~~~~- 77 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.. + +.+ ++++++..|..+.
T Consensus 80 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~---~~v~~~~~D~~~~l 145 (314)
T 1uir_A 80 RVLIVGGGEGATLREVLKHPT-----------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDD---PRAVLVIDDARAYL 145 (314)
T ss_dssp EEEEEECTTSHHHHHHTTSTT-----------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGC---TTEEEEESCHHHHH
T ss_pred eEEEEcCCcCHHHHHHHhcCC-----------CCEEEEEECCHHHHHHHHHHhHhhccccccC---CceEEEEchHHHHH
Confidence 699999999999999988643 578999999999999999987641 1 211 2899999997763
Q ss_pred CCCCCCeeEEEEcccccc---cc--C--HHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRN---VT--R--IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~---~~--~--~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+...++||+|++....+. .+ . ...++.++++.|+|||++++..
T Consensus 146 ~~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 146 ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred HhcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 334578999999766554 11 1 3688999999999999998753
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-14 Score=95.01 Aligned_cols=102 Identities=12% Similarity=-0.014 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++..+ ..+++++|+++.+++.|++++...++.+ ++++..+|..+...+.
T Consensus 24 ~VlDIGtGsG~l~i~la~~~~-----------~~~V~avDi~~~al~~A~~N~~~~gl~~----~I~v~~gD~l~~~~~~ 88 (244)
T 3gnl_A 24 RIADIGSDHAYLPCFAVKNQT-----------ASFAIAGEVVDGPFQSAQKQVRSSGLTE----QIDVRKGNGLAVIEKK 88 (244)
T ss_dssp EEEEETCSTTHHHHHHHHTTS-----------EEEEEEEESSHHHHHHHHHHHHHTTCTT----TEEEEECSGGGGCCGG
T ss_pred EEEEECCccHHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCCc----eEEEEecchhhccCcc
Confidence 689999999999999988642 5689999999999999999999888764 7999999977654333
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++..+.. .-...++.+..+.|++++++++..
T Consensus 89 ~~~D~IviagmGg--~lI~~IL~~~~~~L~~~~~lIlq~ 125 (244)
T 3gnl_A 89 DAIDTIVIAGMGG--TLIRTILEEGAAKLAGVTKLILQP 125 (244)
T ss_dssp GCCCEEEEEEECH--HHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred ccccEEEEeCCch--HHHHHHHHHHHHHhCCCCEEEEEc
Confidence 4699988743322 235677888899999999988754
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=100.15 Aligned_cols=104 Identities=16% Similarity=0.195 Sum_probs=80.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-- 77 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.. ++.+ ++++++..|..+.
T Consensus 123 ~VLdIG~G~G~~a~~la~~~~-----------~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~---~rv~~~~~D~~~~l~ 188 (334)
T 1xj5_A 123 KVLVIGGGDGGVLREVARHAS-----------IEQIDMCEIDKMVVDVSKQFFPDVAIGYED---PRVNLVIGDGVAFLK 188 (334)
T ss_dssp EEEEETCSSSHHHHHHTTCTT-----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGS---TTEEEEESCHHHHHH
T ss_pred EEEEECCCccHHHHHHHHcCC-----------CCEEEEEECCHHHHHHHHHHHHhhccccCC---CcEEEEECCHHHHHH
Confidence 699999999999999987643 579999999999999999987642 2211 2899999997664
Q ss_pred CCCCCCeeEEEEcccccc--ccC--HHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRN--VTR--IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~--~~~--~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+.++||+|++...... ... ...++.++.+.|+|||++++.
T Consensus 189 ~~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 189 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred hccCCCccEEEECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 234578999998654211 112 368899999999999999874
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=97.31 Aligned_cols=78 Identities=4% Similarity=-0.097 Sum_probs=63.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~ 78 (131)
+|||+|||+|.++..++...+ ..+++++|+|+.+++.++++....+... +++++..|+.+. +
T Consensus 68 ~vLDlG~G~G~~~~~la~~~~-----------~~~v~gvD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~ 132 (254)
T 2h00_A 68 RGIDIGTGASCIYPLLGATLN-----------GWYFLATEVDDMCFNYAKKNVEQNNLSD----LIKVVKVPQKTLLMDA 132 (254)
T ss_dssp EEEEESCTTTTHHHHHHHHHH-----------CCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECCTTCSSTTT
T ss_pred EEEEeCCChhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHcCCCc----cEEEEEcchhhhhhhh
Confidence 699999999999998888764 5789999999999999999998776653 699999997652 3
Q ss_pred CCC---CCeeEEEEccccc
Q psy890 79 IES---DSYSAYTIAFGIR 94 (131)
Q Consensus 79 ~~~---~~~D~i~~~~~l~ 94 (131)
++. ++||+|+++...+
T Consensus 133 ~~~~~~~~fD~i~~npp~~ 151 (254)
T 2h00_A 133 LKEESEIIYDFCMCNPPFF 151 (254)
T ss_dssp STTCCSCCBSEEEECCCCC
T ss_pred hhcccCCcccEEEECCCCc
Confidence 332 5899999975443
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.55 E-value=8e-14 Score=98.34 Aligned_cols=101 Identities=11% Similarity=0.026 Sum_probs=81.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LPI- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~- 79 (131)
+|||+| |+|.++..++.... ..+++++|+++.+++.++++.+..++. +++++..|+.+ ++.
T Consensus 175 ~VLDlG-G~G~~~~~la~~~~-----------~~~v~~vDi~~~~l~~a~~~~~~~g~~-----~v~~~~~D~~~~l~~~ 237 (373)
T 2qm3_A 175 DIFVLG-DDDLTSIALMLSGL-----------PKRIAVLDIDERLTKFIEKAANEIGYE-----DIEIFTFDLRKPLPDY 237 (373)
T ss_dssp EEEEES-CTTCHHHHHHHHTC-----------CSEEEEECSCHHHHHHHHHHHHHHTCC-----CEEEECCCTTSCCCTT
T ss_pred EEEEEC-CCCHHHHHHHHhCC-----------CCEEEEEECCHHHHHHHHHHHHHcCCC-----CEEEEEChhhhhchhh
Confidence 699999 99999998876532 468999999999999999999877653 79999999887 553
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|+++..++.. ....++.++.+.|+|||++++.+
T Consensus 238 ~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 238 ALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp TSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred ccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEE
Confidence 34689999998655433 25788999999999999543333
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-14 Score=100.67 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=77.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.. ++.+ ++++++..|..+. +
T Consensus 111 ~VLdIG~G~G~~~~~l~~~~~-----------~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~---~rv~~~~~D~~~~l~ 176 (314)
T 2b2c_A 111 RVLIIGGGDGGILREVLKHES-----------VEKVTMCEIDEMVIDVAKKFLPGMSCGFSH---PKLDLFCGDGFEFLK 176 (314)
T ss_dssp EEEEESCTTSHHHHHHTTCTT-----------CCEEEEECSCHHHHHHHHHHCTTTSGGGGC---TTEEEECSCHHHHHH
T ss_pred EEEEEcCCcCHHHHHHHHcCC-----------CCEEEEEECCHHHHHHHHHHHHHhccccCC---CCEEEEEChHHHHHH
Confidence 699999999999999987643 679999999999999999988643 2211 3899999997653 2
Q ss_pred CCCCCeeEEEEccccccccC--H--HHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTR--I--DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~--~--~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++....+..+. . ..++.++.+.|+|||++++.
T Consensus 177 ~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~ 221 (314)
T 2b2c_A 177 NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 221 (314)
T ss_dssp HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred hcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEE
Confidence 34578999998654322221 1 68899999999999999874
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=99.45 Aligned_cols=105 Identities=11% Similarity=0.082 Sum_probs=78.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++. .++.+ ++++++..|..+. +
T Consensus 98 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vDid~~~i~~ar~~~~~~~~~~~~---~rv~v~~~Da~~~l~ 163 (304)
T 2o07_A 98 KVLIIGGGDGGVLREVVKHPS-----------VESVVQCEIDEDVIQVSKKFLPGMAIGYSS---SKLTLHVGDGFEFMK 163 (304)
T ss_dssp EEEEEECTTSHHHHHHTTCTT-----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGC---TTEEEEESCHHHHHH
T ss_pred EEEEECCCchHHHHHHHHcCC-----------CCEEEEEECCHHHHHHHHHHhHHhhcccCC---CcEEEEECcHHHHHh
Confidence 699999999999999987642 57899999999999999998764 22211 2899999997653 3
Q ss_pred CCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...++||+|++....+..+ ....++.++.+.|+|||++++..
T Consensus 164 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 164 QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 3457899999865433222 12468999999999999998754
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.54 E-value=2e-14 Score=100.06 Aligned_cols=103 Identities=13% Similarity=0.094 Sum_probs=81.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 79 (131)
+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...++.+ .+++++..|+.+...
T Consensus 156 ~VLDlgcGtG~~sl~la~~-------------ga~V~~VD~s~~al~~a~~n~~~~gl~~---~~v~~i~~D~~~~l~~~ 219 (332)
T 2igt_A 156 KVLNLFGYTGVASLVAAAA-------------GAEVTHVDASKKAIGWAKENQVLAGLEQ---APIRWICEDAMKFIQRE 219 (332)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHHHHHTCTT---SCEEEECSCHHHHHHHH
T ss_pred cEEEcccccCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECcHHHHHHHH
Confidence 6999999999999988874 3499999999999999999998776542 148999999876431
Q ss_pred --CCCCeeEEEEccc----------cccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 --ESDSYSAYTIAFG----------IRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 --~~~~~D~i~~~~~----------l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|++... ++...+...++..+.++|+|||++++..
T Consensus 220 ~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~ 272 (332)
T 2igt_A 220 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT 272 (332)
T ss_dssp HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred HhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 1468999999432 1233456788999999999999976644
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.5e-14 Score=97.42 Aligned_cols=105 Identities=13% Similarity=0.113 Sum_probs=78.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.+++++.. ....+ ++++++..|..+. +
T Consensus 93 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vDid~~~~~~a~~~~~~~~~~~~~---~~v~~~~~D~~~~l~ 158 (296)
T 1inl_A 93 KVLIIGGGDGGTLREVLKHDS-----------VEKAILCEVDGLVIEAARKYLKQTSCGFDD---PRAEIVIANGAEYVR 158 (296)
T ss_dssp EEEEEECTTCHHHHHHTTSTT-----------CSEEEEEESCHHHHHHHHHHCHHHHGGGGC---TTEEEEESCHHHHGG
T ss_pred EEEEEcCCcCHHHHHHHhcCC-----------CCEEEEEECCHHHHHHHHHHhHhhccccCC---CceEEEECcHHHHHh
Confidence 699999999999999987643 57999999999999999998754 22211 2899999997653 3
Q ss_pred CCCCCeeEEEEcccccccc-----CHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVT-----RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~-----~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...++||+|++....++.. ....++.++.+.|+|||++++..
T Consensus 159 ~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 159 KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 3356899999854322121 22688999999999999998753
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=99.44 Aligned_cols=105 Identities=13% Similarity=0.195 Sum_probs=80.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh--ccCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD--LFKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++. .+..+ ++++++..|..+. +
T Consensus 119 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vDis~~~l~~ar~~~~~~~~~~~~---~~v~~~~~D~~~~l~ 184 (321)
T 2pt6_A 119 NVLVVGGGDGGIIRELCKYKS-----------VENIDICEIDETVIEVSKIYFKNISCGYED---KRVNVFIEDASKFLE 184 (321)
T ss_dssp EEEEEECTTCHHHHHHTTCTT-----------CCEEEEEESCHHHHHHHHHHCTTTSGGGGS---TTEEEEESCHHHHHH
T ss_pred EEEEEcCCccHHHHHHHHcCC-----------CCEEEEEECCHHHHHHHHHHHHhhccccCC---CcEEEEEccHHHHHh
Confidence 699999999999999887643 57999999999999999998765 22211 2899999997653 2
Q ss_pred CCCCCeeEEEEccccccc--cCH--HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNV--TRI--DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~--~~~--~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...++||+|++...-... ... ..++.++.+.|+|||++++..
T Consensus 185 ~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 185 NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 235689999986532211 122 688999999999999998753
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-14 Score=96.52 Aligned_cols=104 Identities=13% Similarity=0.094 Sum_probs=80.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++.. ...+ ++++++..|..+. +
T Consensus 78 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vEid~~~v~~ar~~~~~~~~~~~~---~rv~v~~~D~~~~l~ 143 (275)
T 1iy9_A 78 HVLVVGGGDGGVIREILKHPS-----------VKKATLVDIDGKVIEYSKKFLPSIAGKLDD---PRVDVQVDDGFMHIA 143 (275)
T ss_dssp EEEEESCTTCHHHHHHTTCTT-----------CSEEEEEESCHHHHHHHHHHCHHHHTTTTS---TTEEEEESCSHHHHH
T ss_pred EEEEECCchHHHHHHHHhCCC-----------CceEEEEECCHHHHHHHHHHhHhhccccCC---CceEEEECcHHHHHh
Confidence 699999999999998887632 579999999999999999987542 2222 3899999997653 3
Q ss_pred CCCCCeeEEEEccccccccC----HHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTR----IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~----~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++....+..+. ...++.++++.|+|||++++.
T Consensus 144 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~ 188 (275)
T 1iy9_A 144 KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (275)
T ss_dssp TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 33578999999654332221 267899999999999999875
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=98.35 Aligned_cols=93 Identities=17% Similarity=0.130 Sum_probs=68.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCcee-EEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLR-FLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~~~~~-- 78 (131)
++||+|||||.++..+++. +..+|+++|+|++|+..+.++-+ ++. +...++..+.
T Consensus 88 ~vLDiGcGTG~~t~~L~~~------------ga~~V~aVDvs~~mL~~a~r~~~----------rv~~~~~~ni~~l~~~ 145 (291)
T 3hp7_A 88 ITIDIGASTGGFTDVMLQN------------GAKLVYAVDVGTNQLVWKLRQDD----------RVRSMEQYNFRYAEPV 145 (291)
T ss_dssp EEEEETCTTSHHHHHHHHT------------TCSEEEEECSSSSCSCHHHHTCT----------TEEEECSCCGGGCCGG
T ss_pred EEEecCCCccHHHHHHHhC------------CCCEEEEEECCHHHHHHHHHhCc----------ccceecccCceecchh
Confidence 6899999999999888775 24689999999999988543211 222 2223333322
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..+||+|++..+++++ ..++.++.++|+|||++++.
T Consensus 146 ~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 146 DFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp GCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred hCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEE
Confidence 334459999998777644 77899999999999999887
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=4.9e-14 Score=96.10 Aligned_cols=105 Identities=13% Similarity=0.217 Sum_probs=80.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--CCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--KVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++..+ ..+++++|+++.+++.++++++... ..+ ++++++..|..+. +
T Consensus 81 ~VLdiG~G~G~~~~~l~~~~~-----------~~~v~~vDid~~~i~~a~~~~~~~~~~~~~---~~v~~~~~D~~~~l~ 146 (283)
T 2i7c_A 81 NVLVVGGGDGGIIRELCKYKS-----------VENIDICEIDETVIEVSKIYFKNISCGYED---KRVNVFIEDASKFLE 146 (283)
T ss_dssp EEEEEECTTSHHHHHHTTCTT-----------CCEEEEEESCHHHHHHHHHHCTTTSGGGGS---TTEEEEESCHHHHHH
T ss_pred eEEEEeCCcCHHHHHHHHcCC-----------CCEEEEEECCHHHHHHHHHHhHHhccccCC---CcEEEEECChHHHHH
Confidence 699999999999999987642 5799999999999999999876431 111 3899999997663 2
Q ss_pred CCCCCeeEEEEcccccccc--CH--HHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVT--RI--DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~--~~--~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...++||+|++....+..+ .. ..++..+++.|+|||++++..
T Consensus 147 ~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 147 NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 2357899999965433222 22 689999999999999998753
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=99.72 Aligned_cols=107 Identities=9% Similarity=0.150 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|..+..+++..+ ...+++++|+++.+++.++++++..+.. ++.++..|...++. .
T Consensus 120 ~VLDl~aGpG~kt~~lA~~~~----------~~g~V~avDis~~~l~~~~~n~~r~g~~-----nv~~~~~D~~~~~~~~ 184 (479)
T 2frx_A 120 RVMDVAAAPGSKTTQISARMN----------NEGAILANEFSASRVKVLHANISRCGIS-----NVALTHFDGRVFGAAV 184 (479)
T ss_dssp EEEESSCTTSHHHHHHHHHTT----------TCSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEEECCCSTTHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCCC-----cEEEEeCCHHHhhhhc
Confidence 699999999999999998864 3578999999999999999999887754 78999999877643 3
Q ss_pred CCCeeEEEEccc------cccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFG------IRNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~------l~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.++||+|++... +...++ ...+|.++.++|||||++++..++.
T Consensus 185 ~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~ 249 (479)
T 2frx_A 185 PEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTL 249 (479)
T ss_dssp TTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccC
Confidence 568999998321 221111 2467899999999999999876654
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=90.00 Aligned_cols=107 Identities=18% Similarity=0.153 Sum_probs=73.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEE-ecccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFL-EANAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~~~~- 78 (131)
.+|||+|||+|.++..+++..+... .....+..+++++|+++.. .. .+++++ ..|+....
T Consensus 24 ~~vLDlGcG~G~~~~~la~~~~~~~--~~~~~~~~~v~~vD~s~~~-----------~~-----~~~~~~~~~d~~~~~~ 85 (196)
T 2nyu_A 24 LRVLDCGAAPGAWSQVAVQKVNAAG--TDPSSPVGFVLGVDLLHIF-----------PL-----EGATFLCPADVTDPRT 85 (196)
T ss_dssp CEEEEETCCSCHHHHHHHHHTTTTC--CCTTSCCCEEEEECSSCCC-----------CC-----TTCEEECSCCTTSHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHhcccc--ccccCCCceEEEEechhcc-----------cC-----CCCeEEEeccCCCHHH
Confidence 3699999999999999998864100 0000012789999999831 11 167888 88866532
Q ss_pred -------CCCCCeeEEEEcccccc----ccCH-------HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 -------IESDSYSAYTIAFGIRN----VTRI-------DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 -------~~~~~~D~i~~~~~l~~----~~~~-------~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++.++||+|++...++. ..+. ...+.++.++|+|||++++..+....
T Consensus 86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 23458999999665443 2222 47899999999999999988765543
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=6.3e-14 Score=95.45 Aligned_cols=101 Identities=11% Similarity=0.068 Sum_probs=78.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cC-------CCCCCCceeEEec
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FK-------VPVPNPRLRFLEA 72 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~ 72 (131)
+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++ .. ++ .+ ++++++..
T Consensus 78 ~VLdiG~G~G~~~~~l~~~-~-----------~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~---~~v~~~~~ 141 (281)
T 1mjf_A 78 RVLVIGGGDGGTVREVLQH-D-----------VDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKH---EKAKLTIG 141 (281)
T ss_dssp EEEEEECTTSHHHHHHTTS-C-----------CSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCC---SSEEEEES
T ss_pred eEEEEcCCcCHHHHHHHhC-C-----------CCEEEEEECCHHHHHHHHHHH-hhccccccccccCCC---CcEEEEEC
Confidence 6999999999999998886 4 579999999999999999987 32 21 11 38999999
Q ss_pred ccccC-CCCCCCeeEEEEcccccccc--C--HHHHHHHHHHhccCCcEEEEE
Q psy890 73 NAEEL-PIESDSYSAYTIAFGIRNVT--R--IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 73 d~~~~-~~~~~~~D~i~~~~~l~~~~--~--~~~~l~~~~~~L~p~G~l~~~ 119 (131)
|..+. +. .++||+|++....+..+ . ...++.++.+.|+|||++++.
T Consensus 142 D~~~~l~~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 192 (281)
T 1mjf_A 142 DGFEFIKN-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 192 (281)
T ss_dssp CHHHHHHH-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred chHHHhcc-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 97553 22 56899999865533221 1 267899999999999999875
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-14 Score=99.78 Aligned_cols=107 Identities=14% Similarity=0.118 Sum_probs=85.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 79 (131)
+|||+|||+|.++..++.. +..+++++|+|+.+++.+++++...+..+ +++++..|+.+...
T Consensus 220 ~VLDl~~G~G~~~~~la~~------------g~~~v~~vD~s~~~l~~a~~n~~~n~~~~----~v~~~~~d~~~~~~~~ 283 (396)
T 2as0_A 220 RVLDVFTYTGGFAIHAAIA------------GADEVIGIDKSPRAIETAKENAKLNGVED----RMKFIVGSAFEEMEKL 283 (396)
T ss_dssp EEEETTCTTTHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCGG----GEEEEESCHHHHHHHH
T ss_pred eEEEecCCCCHHHHHHHHC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCc----cceEEECCHHHHHHHH
Confidence 6899999999999998875 24589999999999999999998877653 79999999776421
Q ss_pred --CCCCeeEEEEcccc---------ccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 --ESDSYSAYTIAFGI---------RNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 --~~~~~D~i~~~~~l---------~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
...+||+|++.... +...+....+.++.+.|+|||++++..++..
T Consensus 284 ~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 339 (396)
T 2as0_A 284 QKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 339 (396)
T ss_dssp HHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred HhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCC
Confidence 25689999995322 1123467788999999999999988876654
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=91.82 Aligned_cols=100 Identities=9% Similarity=0.108 Sum_probs=82.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++.. +..+|+++|+|+.+++.++++++.+++.+ +++++..|..++. ..
T Consensus 128 ~VlD~~aG~G~~~i~~a~~------------g~~~V~avD~np~a~~~~~~N~~~N~v~~----~v~~~~~D~~~~~-~~ 190 (278)
T 3k6r_A 128 LVVDMFAGIGHLSLPIAVY------------GKAKVIAIEKDPYTFKFLVENIHLNKVED----RMSAYNMDNRDFP-GE 190 (278)
T ss_dssp EEEETTCTTTTTTHHHHHH------------TCCEEEEECCCHHHHHHHHHHHHHTTCTT----TEEEECSCTTTCC-CC
T ss_pred EEEEecCcCcHHHHHHHHh------------cCCeEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEeCcHHHhc-cc
Confidence 6899999999999988876 25689999999999999999999988875 8999999988764 34
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
..||.|+++... ....++..+.+.|++||.+.+.++.
T Consensus 191 ~~~D~Vi~~~p~----~~~~~l~~a~~~lk~gG~ih~~~~~ 227 (278)
T 3k6r_A 191 NIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp SCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred cCCCEEEECCCC----cHHHHHHHHHHHcCCCCEEEEEeee
Confidence 679999886432 2345677788999999998776544
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.48 E-value=4e-14 Score=89.95 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=64.2
Q ss_pred EeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC---CCCCeeEEEEccccccc-cCHHHHHHHHHHhccCCcE
Q psy890 40 ADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI---ESDSYSAYTIAFGIRNV-TRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 40 ~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~---~~~~~D~i~~~~~l~~~-~~~~~~l~~~~~~L~p~G~ 115 (131)
+|+|+.|++.++++... ++++...|+.++++ +.++||+|++.++++++ ++....+.++++.|||||+
T Consensus 26 vD~s~~ml~~a~~~~~~---------~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~ 96 (176)
T 2ld4_A 26 VEALKGLVDKLQALTGN---------EGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGC 96 (176)
T ss_dssp HHHHHHHHHHHHHHTTT---------TSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEE
T ss_pred eeCCHHHHHHHHHhccc---------CcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEE
Confidence 89999999999988642 57889999988776 67899999999999999 8999999999999999999
Q ss_pred EEEEe
Q psy890 116 FLCLE 120 (131)
Q Consensus 116 l~~~~ 120 (131)
+++.+
T Consensus 97 l~~~~ 101 (176)
T 2ld4_A 97 LFLKE 101 (176)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99854
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-14 Score=98.79 Aligned_cols=105 Identities=23% Similarity=0.180 Sum_probs=84.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 79 (131)
+|||+|||+|.++..++.. ..+++++|+|+.+++.+++++...+.. +++++..|+.+...
T Consensus 212 ~VLDlg~G~G~~~~~la~~-------------~~~v~~vD~s~~~~~~a~~n~~~n~~~-----~~~~~~~d~~~~~~~~ 273 (382)
T 1wxx_A 212 RALDVFSYAGGFALHLALG-------------FREVVAVDSSAEALRRAEENARLNGLG-----NVRVLEANAFDLLRRL 273 (382)
T ss_dssp EEEEETCTTTHHHHHHHHH-------------EEEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEESCHHHHHHHH
T ss_pred eEEEeeeccCHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----CceEEECCHHHHHHHH
Confidence 6899999999999999886 358999999999999999999887754 68999999876521
Q ss_pred --CCCCeeEEEEccccc---------cccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 --ESDSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 --~~~~~D~i~~~~~l~---------~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
...+||+|++..... .......++.++.+.|+|||++++...+..
T Consensus 274 ~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 329 (382)
T 1wxx_A 274 EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 329 (382)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 256899999853221 113456788999999999999998876644
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-13 Score=97.30 Aligned_cols=107 Identities=16% Similarity=0.189 Sum_probs=85.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-CCCCCCceeEEecccccCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-VPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~- 79 (131)
+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++...+. .+ +++++..|+.+...
T Consensus 223 ~VLDl~cG~G~~sl~la~~------------g~~~V~~vD~s~~al~~a~~n~~~ngl~~~----~v~~~~~D~~~~~~~ 286 (396)
T 3c0k_A 223 RVLNCFSYTGGFAVSALMG------------GCSQVVSVDTSQEALDIARQNVELNKLDLS----KAEFVRDDVFKLLRT 286 (396)
T ss_dssp EEEEESCTTCSHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCCGG----GEEEEESCHHHHHHH
T ss_pred eEEEeeccCCHHHHHHHHC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCcc----ceEEEECCHHHHHHH
Confidence 6899999999999998875 245899999999999999999988775 43 78999999776521
Q ss_pred ---CCCCeeEEEEcccc---------ccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ---ESDSYSAYTIAFGI---------RNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ---~~~~~D~i~~~~~l---------~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
...+||+|++.... .........+.++.+.|+|||++++...+..
T Consensus 287 ~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 343 (396)
T 3c0k_A 287 YRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSGL 343 (396)
T ss_dssp HHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 14689999996322 1224567889999999999999998765543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=93.78 Aligned_cols=98 Identities=10% Similarity=0.097 Sum_probs=81.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++.. ++ + ..+++++|+|+.+++.+++++...++.+ +++++..|..+..
T Consensus 198 ~VLDlg~G~G~~~l~-a~--~-----------~~~V~~vD~s~~ai~~a~~n~~~n~l~~----~v~~~~~D~~~~~--- 256 (336)
T 2yx1_A 198 VVVDMFAGVGPFSIA-CK--N-----------AKKIYAIDINPHAIELLKKNIKLNKLEH----KIIPILSDVREVD--- 256 (336)
T ss_dssp EEEETTCTTSHHHHH-TT--T-----------SSEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEESCGGGCC---
T ss_pred EEEEccCccCHHHHh-cc--C-----------CCEEEEEECCHHHHHHHHHHHHHcCCCC----cEEEEECChHHhc---
Confidence 689999999999988 66 2 5789999999999999999998887653 7999999988765
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+||+|++...- ....++..+.+.|+|||.+++.+++..
T Consensus 257 ~~fD~Vi~dpP~----~~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 257 VKGNRVIMNLPK----FAHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp CCEEEEEECCTT----TGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred CCCcEEEECCcH----hHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 789999985321 123678889999999999998877654
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-13 Score=95.01 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=80.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
..|||+|||+|.++..++.... ..+++++|+|+.+++.++++....++.+ ++++...|+.+++.+
T Consensus 219 ~~vLD~gCGsG~~~i~~a~~~~-----------~~~v~g~Dis~~~l~~A~~n~~~~gl~~----~i~~~~~D~~~~~~~ 283 (373)
T 3tm4_A 219 GSVLDPMCGSGTILIELALRRY-----------SGEIIGIEKYRKHLIGAEMNALAAGVLD----KIKFIQGDATQLSQY 283 (373)
T ss_dssp CCEEETTCTTCHHHHHHHHTTC-----------CSCEEEEESCHHHHHHHHHHHHHTTCGG----GCEEEECCGGGGGGT
T ss_pred CEEEEccCcCcHHHHHHHHhCC-----------CCeEEEEeCCHHHHHHHHHHHHHcCCCC----ceEEEECChhhCCcc
Confidence 3689999999999998887632 3489999999999999999998887654 899999999998877
Q ss_pred CCCeeEEEEcccccc-------ccC-HHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRN-------VTR-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~-------~~~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|+++..... ..+ ...++.++.+.| +|.++++.
T Consensus 284 ~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~ 329 (373)
T 3tm4_A 284 VDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFIT 329 (373)
T ss_dssp CSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEE
T ss_pred cCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 788999999654321 112 256778888888 45544443
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.1e-13 Score=96.32 Aligned_cols=107 Identities=18% Similarity=0.198 Sum_probs=84.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
.+|||+|||+|..+..+++..+ ..+++++|+++.++..+++++...+. ++.++..|....+
T Consensus 248 ~~VLDlgaG~G~~t~~la~~~~-----------~~~v~a~D~~~~~l~~~~~~~~~~g~------~~~~~~~D~~~~~~~ 310 (429)
T 1sqg_A 248 EHILDLCAAPGGKTTHILEVAP-----------EAQVVAVDIDEQRLSRVYDNLKRLGM------KATVKQGDGRYPSQW 310 (429)
T ss_dssp CEEEEESCTTCHHHHHHHHHCT-----------TCEEEEEESSTTTHHHHHHHHHHTTC------CCEEEECCTTCTHHH
T ss_pred CeEEEECCCchHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHHHHHcCC------CeEEEeCchhhchhh
Confidence 3699999999999999998854 47899999999999999999887653 4688888887764
Q ss_pred CCCCCeeEEEEccc------cccccCH----------------HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 79 IESDSYSAYTIAFG------IRNVTRI----------------DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 79 ~~~~~~D~i~~~~~------l~~~~~~----------------~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++.++||+|++... ++..++. ..++.++.++|||||++++..++..
T Consensus 311 ~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~ 378 (429)
T 1sqg_A 311 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 378 (429)
T ss_dssp HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 44578999997322 2222221 4779999999999999999876643
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=2.8e-13 Score=102.22 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=84.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|.++..++.. ...+++++|+|+.+++.+++++..+++.. .+++++..|..+. +..
T Consensus 542 ~VLDlg~GtG~~sl~aa~~------------ga~~V~aVD~s~~al~~a~~N~~~ngl~~---~~v~~i~~D~~~~l~~~ 606 (703)
T 3v97_A 542 DFLNLFSYTGSATVHAGLG------------GARSTTTVDMSRTYLEWAERNLRLNGLTG---RAHRLIQADCLAWLREA 606 (703)
T ss_dssp EEEEESCTTCHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCCS---TTEEEEESCHHHHHHHC
T ss_pred cEEEeeechhHHHHHHHHC------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCc---cceEEEecCHHHHHHhc
Confidence 6999999999999988774 24579999999999999999998887652 1799999998763 334
Q ss_pred CCCeeEEEEccc-----------cccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFG-----------IRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~-----------l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|++... +....+...++..+.++|+|||++++...+
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 578999998542 223345678899999999999999876544
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-13 Score=93.46 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=73.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.++..++++....+..+ +++++..|+.+.+++
T Consensus 31 ~VLDiG~G~G~lt~~L~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~----~v~~~~~D~~~~~~~- 92 (285)
T 1zq9_A 31 VVLEVGPGTGNMTVKLLEK-------------AKKVVACELDPRLVAELHKRVQGTPVAS----KLQVLVGDVLKTDLP- 92 (285)
T ss_dssp EEEEECCTTSTTHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTSTTGG----GEEEEESCTTTSCCC-
T ss_pred EEEEEcCcccHHHHHHHhh-------------CCEEEEEECCHHHHHHHHHHHHhcCCCC----ceEEEEcceecccch-
Confidence 6899999999999999886 4589999999999999999886544322 799999999877654
Q ss_pred CCeeEEEEccccccccCHH-HHHH--------------HH--HHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVTRID-KALS--------------EA--YRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~-~~l~--------------~~--~~~L~p~G~l~ 117 (131)
+||+|+++...++..... ..+. ++ ++.++|||.++
T Consensus 93 -~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 93 -FFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY 144 (285)
T ss_dssp -CCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred -hhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence 799999976665543322 2221 11 35789999653
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=96.93 Aligned_cols=108 Identities=9% Similarity=0.043 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-~ 79 (131)
+|||+|||+|.++..++.. ...+++++|+|+.+++.++++.+..++.+ .+++++..|+.+. + .
T Consensus 215 ~VLDl~cGtG~~sl~la~~------------ga~~V~~vD~s~~al~~A~~N~~~n~~~~---~~v~~~~~D~~~~l~~~ 279 (385)
T 2b78_A 215 TVLNLFSYTAAFSVAAAMG------------GAMATTSVDLAKRSRALSLAHFEANHLDM---ANHQLVVMDVFDYFKYA 279 (385)
T ss_dssp EEEEETCTTTHHHHHHHHT------------TBSEEEEEESCTTHHHHHHHHHHHTTCCC---TTEEEEESCHHHHHHHH
T ss_pred eEEEEeeccCHHHHHHHHC------------CCCEEEEEECCHHHHHHHHHHHHHcCCCc---cceEEEECCHHHHHHHH
Confidence 6899999999999998874 13589999999999999999998876542 1689999997663 2 1
Q ss_pred --CCCCeeEEEEcccc-----cccc----CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 --ESDSYSAYTIAFGI-----RNVT----RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 --~~~~~D~i~~~~~l-----~~~~----~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
...+||+|++.... .... ....++..+.+.|+|||++++...+..
T Consensus 280 ~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 280 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 24589999984332 1222 345567888999999999988765543
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=97.79 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=83.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
++|||+|||+|..+..++...+ ...+++++|+++.+++.++++++..+. .+.++..|...++ .
T Consensus 103 ~~VLDlgaGpG~kt~~LA~~~~----------~~g~V~AvDis~~~l~~a~~n~~r~G~------~v~~~~~Da~~l~~~ 166 (464)
T 3m6w_A 103 ERVLDLAAAPGGKTTHLAARMG----------GKGLLLANEVDGKRVRGLLENVERWGA------PLAVTQAPPRALAEA 166 (464)
T ss_dssp CEEEESSCTTCHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHHCC------CCEEECSCHHHHHHH
T ss_pred CEEEEEcCCcCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHcCC------eEEEEECCHHHhhhh
Confidence 3699999999999999998865 346899999999999999999987763 3778888877654 2
Q ss_pred CCCCeeEEEEcccc------ccccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ESDSYSAYTIAFGI------RNVTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~~~~D~i~~~~~l------~~~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..++||+|++.... +.-++ ...++.++.++|||||+++...++.
T Consensus 167 ~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~ 232 (464)
T 3m6w_A 167 FGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTF 232 (464)
T ss_dssp HCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred ccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccC
Confidence 35789999973221 11121 1678999999999999999876654
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=93.18 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=76.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|..+..+++. + .+++++|+++.+++.++++++.. ...+ ++++++..|..+..
T Consensus 75 ~VL~iG~G~G~~~~~ll~~------------~-~~v~~veid~~~i~~ar~~~~~~~~~~~~---~rv~~~~~D~~~~~- 137 (262)
T 2cmg_A 75 EVLIVDGFDLELAHQLFKY------------D-THIDFVQADEKILDSFISFFPHFHEVKNN---KNFTHAKQLLDLDI- 137 (262)
T ss_dssp EEEEESSCCHHHHHHHTTS------------S-CEEEEECSCHHHHGGGTTTSTTHHHHHTC---TTEEEESSGGGSCC-
T ss_pred EEEEEeCCcCHHHHHHHhC------------C-CEEEEEECCHHHHHHHHHHHHhhccccCC---CeEEEEechHHHHH-
Confidence 6999999999999888776 3 58999999999999998876531 1221 38999999987754
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|++. ..++..++..+++.|+|||++++.
T Consensus 138 --~~fD~Ii~d-----~~dp~~~~~~~~~~L~pgG~lv~~ 170 (262)
T 2cmg_A 138 --KKYDLIFCL-----QEPDIHRIDGLKRMLKEDGVFISV 170 (262)
T ss_dssp --CCEEEEEES-----SCCCHHHHHHHHTTEEEEEEEEEE
T ss_pred --hhCCEEEEC-----CCChHHHHHHHHHhcCCCcEEEEE
Confidence 789999986 235556899999999999999875
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=94.81 Aligned_cols=105 Identities=16% Similarity=0.035 Sum_probs=79.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
+|||+|||+|.++..++.. +.+++++|+|+.+++.+++++...+.. .++...|+.+.. ..
T Consensus 217 ~VLDlg~GtG~~sl~~a~~-------------ga~V~avDis~~al~~a~~n~~~ng~~------~~~~~~D~~~~l~~~ 277 (393)
T 4dmg_A 217 RVLDVYSYVGGFALRAARK-------------GAYALAVDKDLEALGVLDQAALRLGLR------VDIRHGEALPTLRGL 277 (393)
T ss_dssp EEEEESCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHHTCC------CEEEESCHHHHHHTC
T ss_pred eEEEcccchhHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHHHHHhCCC------CcEEEccHHHHHHHh
Confidence 6999999999999999875 345999999999999999999887653 245588876642 11
Q ss_pred CCCeeEEEEcccc-c--------cccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGI-R--------NVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l-~--------~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.+.||+|++.... . ...+...++..+.++|+|||+++++.++...
T Consensus 278 ~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~~ 331 (393)
T 4dmg_A 278 EGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYHL 331 (393)
T ss_dssp CCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTS
T ss_pred cCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCCC
Confidence 2349999986432 1 1124467888999999999999987776543
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.6e-13 Score=97.07 Aligned_cols=108 Identities=12% Similarity=0.057 Sum_probs=85.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
++|||+|||+|..+..++...+ ...+++++|+++.+++.++++++..+.. ++.++..|...++ .
T Consensus 107 ~~VLDlcaGpGgkt~~lA~~~~----------~~g~V~AvDis~~rl~~~~~n~~r~g~~-----nv~v~~~Da~~l~~~ 171 (456)
T 3m4x_A 107 EKVLDLCAAPGGKSTQLAAQMK----------GKGLLVTNEIFPKRAKILSENIERWGVS-----NAIVTNHAPAELVPH 171 (456)
T ss_dssp CEEEESSCTTCHHHHHHHHHHT----------TCSEEEEECSSHHHHHHHHHHHHHHTCS-----SEEEECCCHHHHHHH
T ss_pred CEEEEECCCcCHHHHHHHHHcC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEeCCHHHhhhh
Confidence 3699999999999999998875 3578999999999999999999887765 7899999977654 2
Q ss_pred CCCCeeEEEEcccccc------ccC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 80 ESDSYSAYTIAFGIRN------VTR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~------~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..++||+|++...+.. -++ ...+|.++.++|||||+++...++.
T Consensus 172 ~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 237 (456)
T 3m4x_A 172 FSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTF 237 (456)
T ss_dssp HTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCC
T ss_pred ccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeec
Confidence 3478999998543211 111 1277899999999999998876654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.2e-12 Score=83.36 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=66.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. + ..+++++|+|+.+++.++++.. +++++..|+.+++
T Consensus 54 ~vlD~gcG~G~~~~~l~~~-~-----------~~~v~~vD~~~~~~~~a~~~~~----------~~~~~~~d~~~~~--- 108 (200)
T 1ne2_A 54 SVIDAGTGNGILACGSYLL-G-----------AESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEIS--- 108 (200)
T ss_dssp EEEEETCTTCHHHHHHHHT-T-----------BSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGCC---
T ss_pred EEEEEeCCccHHHHHHHHc-C-----------CCEEEEEECCHHHHHHHHHhcC----------CCEEEECcHHHCC---
Confidence 6999999999999988775 2 4579999999999999998864 4788999988764
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhc
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVL 110 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L 110 (131)
++||+|+++..+++..+ ...++.++.+.+
T Consensus 109 ~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 109 GKYDTWIMNPPFGSVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp CCEEEEEECCCC-------CHHHHHHHHHHE
T ss_pred CCeeEEEECCCchhccCchhHHHHHHHHHhc
Confidence 68999999988887754 346788888888
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.8e-12 Score=90.45 Aligned_cols=106 Identities=13% Similarity=0.117 Sum_probs=81.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++...... + ...+++|+|+++.++..++.+....+. ++.++..|.... ...
T Consensus 133 ~VlDp~cGsG~~l~~~~~~~~~~~--~----~~~~v~GiDi~~~~~~~a~~n~~~~g~------~~~i~~~D~l~~-~~~ 199 (344)
T 2f8l_A 133 SILDPACGTANLLTTVINQLELKG--D----VDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLAN-LLV 199 (344)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTS--S----CEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSC-CCC
T ss_pred EEEeCCCCccHHHHHHHHHHHHhc--C----CCceEEEEECCHHHHHHHHHHHHhCCC------CceEEECCCCCc-ccc
Confidence 689999999999999988875110 0 126899999999999999998876553 577888886553 235
Q ss_pred CCeeEEEEccccccccCH------------------HHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRI------------------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~------------------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++..+.+++.. ..++.++.+.|+|||+++++.
T Consensus 200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~ 256 (344)
T 2f8l_A 200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 256 (344)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEE
Confidence 689999998776544321 257999999999999988875
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=8.6e-13 Score=85.16 Aligned_cols=96 Identities=15% Similarity=0.102 Sum_probs=70.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 79 (131)
++|||+|||+|.++..+++. ..+++++|+++.. .. +++.++..|+.+.+.
T Consensus 27 ~~VLDlG~G~G~~s~~la~~-------------~~~V~gvD~~~~~-----------~~-----~~v~~~~~D~~~~~~~ 77 (191)
T 3dou_A 27 DAVIEIGSSPGGWTQVLNSL-------------ARKIISIDLQEME-----------EI-----AGVRFIRCDIFKETIF 77 (191)
T ss_dssp CEEEEESCTTCHHHHHHTTT-------------CSEEEEEESSCCC-----------CC-----TTCEEEECCTTSSSHH
T ss_pred CEEEEEeecCCHHHHHHHHc-------------CCcEEEEeccccc-----------cC-----CCeEEEEccccCHHHH
Confidence 47999999999999988876 4689999998731 11 279999999887541
Q ss_pred -------C---CCCeeEEEEcccccccc-----------CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 80 -------E---SDSYSAYTIAFGIRNVT-----------RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 80 -------~---~~~~D~i~~~~~l~~~~-----------~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
. .++||+|++........ ....++..+.++|+|||.+++..+..+.
T Consensus 78 ~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 78 DDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp HHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred HHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 1 14899999965432111 1356788899999999999987665543
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=89.38 Aligned_cols=97 Identities=18% Similarity=0.137 Sum_probs=62.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. + ..+++++|+|++|+..++++.+...... ..++.+.. .... ..
T Consensus 40 ~VLDiGcGtG~~t~~la~~-g-----------~~~V~gvDis~~ml~~a~~~~~~~~~~~--~~~~~~~~--~~~~--~~ 101 (232)
T 3opn_A 40 TCLDIGSSTGGFTDVMLQN-G-----------AKLVYALDVGTNQLAWKIRSDERVVVME--QFNFRNAV--LADF--EQ 101 (232)
T ss_dssp EEEEETCTTSHHHHHHHHT-T-----------CSEEEEECSSCCCCCHHHHTCTTEEEEC--SCCGGGCC--GGGC--CS
T ss_pred EEEEEccCCCHHHHHHHhc-C-----------CCEEEEEcCCHHHHHHHHHhCccccccc--cceEEEeC--HhHc--Cc
Confidence 6999999999999988876 1 3589999999999998776543211000 00222222 1111 11
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+|.+.+..++.++ ..++.+++++|||||++++.
T Consensus 102 ~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~ 136 (232)
T 3opn_A 102 GRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAAL 136 (232)
T ss_dssp CCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEE
T ss_pred CCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEE
Confidence 123444444333333 67899999999999999886
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-11 Score=79.96 Aligned_cols=88 Identities=10% Similarity=0.106 Sum_probs=71.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....+. ++.++..|+.+++
T Consensus 52 ~vlD~g~G~G~~~~~l~~~-~-----------~~~v~~vD~~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~~--- 110 (207)
T 1wy7_A 52 VVADLGAGTGVLSYGALLL-G-----------AKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEFN--- 110 (207)
T ss_dssp EEEEETCTTCHHHHHHHHT-T-----------CSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGCC---
T ss_pred EEEEeeCCCCHHHHHHHHc-C-----------CCEEEEEECCHHHHHHHHHHHHHcCC------CEEEEECchHHcC---
Confidence 6899999999999988775 1 35799999999999999999876552 6889999988864
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVL 110 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L 110 (131)
.+||+|+++..++... .....+.++.+.+
T Consensus 111 ~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 111 SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS 141 (207)
T ss_dssp CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC
T ss_pred CCCCEEEEcCCCccccCCchHHHHHHHHHhc
Confidence 4799999987766654 3456788888887
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-13 Score=92.87 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=69.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh-hccCCCCCCCceeEE--ecccccCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR-DLFKVPVPNPRLRFL--EANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~d~~~~~ 78 (131)
+|||+|||+|.++..+++. .+|+++|+++ +...++++.. ..... .++.++ ..|+..++
T Consensus 85 ~VLDlGcGtG~~s~~la~~--------------~~V~gVD~s~-m~~~a~~~~~~~~~~~----~~v~~~~~~~D~~~l~ 145 (276)
T 2wa2_A 85 TVVDLGCGRGSWSYYAASQ--------------PNVREVKAYT-LGTSGHEKPRLVETFG----WNLITFKSKVDVTKME 145 (276)
T ss_dssp EEEEESCTTCHHHHHHHTS--------------TTEEEEEEEC-CCCTTSCCCCCCCCTT----GGGEEEECSCCGGGCC
T ss_pred EEEEeccCCCHHHHHHHHc--------------CCEEEEECch-hhhhhhhchhhhhhcC----CCeEEEeccCcHhhCC
Confidence 6999999999999888764 3699999998 5332221110 00001 157888 88988765
Q ss_pred CCCCCeeEEEEccccccccCH----H---HHHHHHHHhccCCc--EEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNVTRI----D---KALSEAYRVLKPGG--RFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~----~---~~l~~~~~~L~p~G--~l~~~~~~ 122 (131)
.++||+|++..+ +...+. . .++..+.++|+||| .+++..+.
T Consensus 146 --~~~fD~Vvsd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 146 --PFQADTVLCDIG-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp --CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred --CCCcCEEEECCC-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 578999999876 333221 1 36888999999999 88886665
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=3.2e-12 Score=85.64 Aligned_cols=100 Identities=8% Similarity=-0.007 Sum_probs=82.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|-++..++...+ ..+|+++|+++.+++.+++++...++ ..++...|....+ +.
T Consensus 135 ~VLDLGCG~GpLAl~~~~~~p-----------~a~y~a~DId~~~le~a~~~l~~~g~------~~~~~v~D~~~~~-p~ 196 (281)
T 3lcv_B 135 TLRDLACGLNPLAAPWMGLPA-----------ETVYIASDIDARLVGFVDEALTRLNV------PHRTNVADLLEDR-LD 196 (281)
T ss_dssp EEEETTCTTGGGCCTTTTCCT-----------TCEEEEEESBHHHHHHHHHHHHHTTC------CEEEEECCTTTSC-CC
T ss_pred eeeeeccCccHHHHHHHhhCC-----------CCEEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeeecccC-CC
Confidence 699999999999988877543 78999999999999999999987663 5777788866543 45
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+++++-.++++++- ...+ ++...|+|+|+++-.+
T Consensus 197 ~~~DvaL~lkti~~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 197 EPADVTLLLKTLPCLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp SCCSEEEETTCHHHHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred CCcchHHHHHHHHHhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 779999999999998643 3444 8999999999987654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=81.55 Aligned_cols=98 Identities=14% Similarity=-0.025 Sum_probs=79.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|-++..+. + ..+|+++|+++.+++.++++....+. +..+...|....+.+
T Consensus 108 ~VLDlGCG~gpLal~~~---~-----------~~~y~a~DId~~~i~~ar~~~~~~g~------~~~~~v~D~~~~~~~- 166 (253)
T 3frh_A 108 RVLDIACGLNPLALYER---G-----------IASVWGCDIHQGLGDVITPFAREKDW------DFTFALQDVLCAPPA- 166 (253)
T ss_dssp EEEEETCTTTHHHHHHT---T-----------CSEEEEEESBHHHHHHHHHHHHHTTC------EEEEEECCTTTSCCC-
T ss_pred eEEEecCCccHHHHHhc---c-----------CCeEEEEeCCHHHHHHHHHHHHhcCC------CceEEEeecccCCCC-
Confidence 69999999999988776 3 67999999999999999999877652 788999998776644
Q ss_pred CCeeEEEEccccccccCH-HHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRI-DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~-~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++.-.+|++++. .....++...|+++++++-.+
T Consensus 167 ~~~DvvLllk~lh~LE~q~~~~~~~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 167 EAGDLALIFKLLPLLEREQAGSAMALLQSLNTPRMAVSFP 206 (253)
T ss_dssp CBCSEEEEESCHHHHHHHSTTHHHHHHHHCBCSEEEEEEE
T ss_pred CCcchHHHHHHHHHhhhhchhhHHHHHHHhcCCCEEEEcC
Confidence 589999999888888632 223338888999999887665
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.32 E-value=9.1e-12 Score=85.49 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=58.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++....+.. +++++.+|+.+.++
T Consensus 45 ~VLDiG~G~G~lt~~La~~-------------~~~v~~vDi~~~~~~~a~~~~~~~~~~-----~v~~~~~D~~~~~~-- 104 (299)
T 2h1r_A 45 IVLEIGCGTGNLTVKLLPL-------------AKKVITIDIDSRMISEVKKRCLYEGYN-----NLEVYEGDAIKTVF-- 104 (299)
T ss_dssp EEEEECCTTSTTHHHHTTT-------------SSEEEEECSCHHHHHHHHHHHHHTTCC-----CEEC----CCSSCC--
T ss_pred EEEEEcCcCcHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEECchhhCCc--
Confidence 6899999999999988875 468999999999999999988755442 79999999887654
Q ss_pred CCeeEEEEccccccc
Q psy890 82 DSYSAYTIAFGIRNV 96 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~ 96 (131)
.+||+|+++...++.
T Consensus 105 ~~~D~Vv~n~py~~~ 119 (299)
T 2h1r_A 105 PKFDVCTANIPYKIS 119 (299)
T ss_dssp CCCSEEEEECCGGGH
T ss_pred ccCCEEEEcCCcccc
Confidence 379999997665544
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-13 Score=90.80 Aligned_cols=99 Identities=11% Similarity=0.028 Sum_probs=68.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-hhccCCCCCCCceeEE--ecccccCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-RDLFKVPVPNPRLRFL--EANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~d~~~~~ 78 (131)
+|||+|||+|.++..+++. .+|+++|+++ +...+.+.. ...... .++.++ ..|+..++
T Consensus 77 ~VLDlGcGtG~~s~~la~~--------------~~V~gvD~s~-m~~~a~~~~~~~~~~~----~~v~~~~~~~D~~~l~ 137 (265)
T 2oxt_A 77 RVVDLGCGRGGWSYYAASR--------------PHVMDVRAYT-LGVGGHEVPRITESYG----WNIVKFKSRVDIHTLP 137 (265)
T ss_dssp EEEEESCTTSHHHHHHHTS--------------TTEEEEEEEC-CCCSSCCCCCCCCBTT----GGGEEEECSCCTTTSC
T ss_pred EEEEeCcCCCHHHHHHHHc--------------CcEEEEECch-hhhhhhhhhhhhhccC----CCeEEEecccCHhHCC
Confidence 6999999999999887764 3699999988 432221110 000000 157888 88888764
Q ss_pred CCCCCeeEEEEccccccccCH----H---HHHHHHHHhccCCc--EEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNVTRI----D---KALSEAYRVLKPGG--RFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~----~---~~l~~~~~~L~p~G--~l~~~~~~ 122 (131)
.++||+|++..+ +...+. . .++..+.++|+||| .+++..+.
T Consensus 138 --~~~fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 138 --VERTDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp --CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred --CCCCcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 578999999876 433221 1 37888999999999 98886665
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-11 Score=85.11 Aligned_cols=115 Identities=14% Similarity=0.072 Sum_probs=81.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCC---------------------------CCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS---------------------------EHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~---------------------------~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
.+||++||+|.+.+.++....+.+++... .....+++++|+++.+++.++++.
T Consensus 204 ~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~Na 283 (393)
T 3k0b_A 204 PFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNA 283 (393)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHHHH
Confidence 58999999999988887765432211000 001256999999999999999999
Q ss_pred hhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccc--cccc--cCHHHHHHHHHHhccC--CcEEEEEec
Q psy890 55 RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRNV--TRIDKALSEAYRVLKP--GGRFLCLEF 121 (131)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~--l~~~--~~~~~~l~~~~~~L~p--~G~l~~~~~ 121 (131)
...++.+ ++.+...|+.+.+.+ .+||+|+++-. ...- .+...++.++.+.|++ ||.++++..
T Consensus 284 ~~~gl~~----~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 351 (393)
T 3k0b_A 284 VEAGLGD----LITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYVLTS 351 (393)
T ss_dssp HHTTCTT----CSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred HHcCCCC----ceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 9888764 799999999887654 58999999733 3211 2344556666666665 888877653
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-12 Score=89.60 Aligned_cols=99 Identities=8% Similarity=-0.021 Sum_probs=67.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC----CHHHHHHHHHHhhhccCCCCCCCceeEEec-cccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI----NRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~----s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~ 76 (131)
+|||+|||+|.++..+++. .+|+++|+ ++.++... .....+. +++.++.. |+..
T Consensus 85 ~VLDlGcG~G~~s~~la~~--------------~~V~gvD~~~~~~~~~~~~~--~~~~~~~-----~~v~~~~~~D~~~ 143 (305)
T 2p41_A 85 KVVDLGCGRGGWSYYCGGL--------------KNVREVKGLTKGGPGHEEPI--PMSTYGW-----NLVRLQSGVDVFF 143 (305)
T ss_dssp EEEEETCTTSHHHHHHHTS--------------TTEEEEEEECCCSTTSCCCC--CCCSTTG-----GGEEEECSCCTTT
T ss_pred EEEEEcCCCCHHHHHHHhc--------------CCEEEEeccccCchhHHHHH--HhhhcCC-----CCeEEEecccccc
Confidence 6999999999999888774 36999998 55433111 0111111 26888888 8776
Q ss_pred CCCCCCCeeEEEEccccc---cccCHH---HHHHHHHHhccCCcEEEEEeccC
Q psy890 77 LPIESDSYSAYTIAFGIR---NVTRID---KALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~---~~~~~~---~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++ .++||+|++..+.+ +..+.. .+|..+.++|||||.+++..+..
T Consensus 144 l~--~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 144 IP--PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp SC--CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CC--cCCCCEEEECCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 54 46899999977653 222222 47888899999999988754443
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=86.39 Aligned_cols=96 Identities=17% Similarity=0.144 Sum_probs=72.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+.. +++++..|+.+.
T Consensus 289 ~VLDlgcG~G~~~~~la~~-------------~~~V~gvD~s~~al~~A~~n~~~~~~~-----~v~f~~~d~~~~l~~~ 350 (433)
T 1uwv_A 289 RVLDLFCGMGNFTLPLATQ-------------AASVVGVEGVPALVEKGQQNARLNGLQ-----NVTFYHENLEEDVTKQ 350 (433)
T ss_dssp EEEEESCTTTTTHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCTTSCCSSS
T ss_pred EEEECCCCCCHHHHHHHhh-------------CCEEEEEeCCHHHHHHHHHHHHHcCCC-----ceEEEECCHHHHhhhh
Confidence 6899999999999998875 468999999999999999999877654 799999998772
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++..++||+|++.-.-... ...+..+. .++|++++++.
T Consensus 351 ~~~~~~fD~Vv~dPPr~g~---~~~~~~l~-~~~p~~ivyvs 388 (433)
T 1uwv_A 351 PWAKNGFDKVLLDPARAGA---AGVMQQII-KLEPIRIVYVS 388 (433)
T ss_dssp GGGTTCCSEEEECCCTTCC---HHHHHHHH-HHCCSEEEEEE
T ss_pred hhhcCCCCEEEECCCCccH---HHHHHHHH-hcCCCeEEEEE
Confidence 2445689999985433222 23444443 36787777663
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=83.89 Aligned_cols=74 Identities=9% Similarity=0.077 Sum_probs=63.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.++..+++++.... +++++.+|+.+.+++.
T Consensus 53 ~VLEIG~G~G~lT~~La~~-------------~~~V~aVEid~~li~~a~~~~~~~~-------~v~vi~gD~l~~~~~~ 112 (295)
T 3gru_A 53 VVLEIGLGKGILTEELAKN-------------AKKVYVIEIDKSLEPYANKLKELYN-------NIEIIWGDALKVDLNK 112 (295)
T ss_dssp EEEEECCTTSHHHHHHHHH-------------SSEEEEEESCGGGHHHHHHHHHHCS-------SEEEEESCTTTSCGGG
T ss_pred EEEEECCCchHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHhccCC-------CeEEEECchhhCCccc
Confidence 6999999999999999886 4689999999999999999987433 8999999999887777
Q ss_pred CCeeEEEEcccccc
Q psy890 82 DSYSAYTIAFGIRN 95 (131)
Q Consensus 82 ~~~D~i~~~~~l~~ 95 (131)
.+||.|+++...+.
T Consensus 113 ~~fD~Iv~NlPy~i 126 (295)
T 3gru_A 113 LDFNKVVANLPYQI 126 (295)
T ss_dssp SCCSEEEEECCGGG
T ss_pred CCccEEEEeCcccc
Confidence 78999998765443
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.27 E-value=1.6e-10 Score=79.66 Aligned_cols=107 Identities=10% Similarity=0.007 Sum_probs=78.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|..+..++.... ...+|+++|+++.+++.++++++..+.. +++++..|+.+....
T Consensus 104 ~~VLDlcaG~G~kt~~la~~~~----------~~g~V~a~D~~~~~l~~~~~n~~r~g~~-----~v~~~~~D~~~~~~~ 168 (309)
T 2b9e_A 104 SHVIDACAAPGNKTSHLAALLK----------NQGKIFAFDLDAKRLASMATLLARAGVS-----CCELAEEDFLAVSPS 168 (309)
T ss_dssp CEEEESSCTTCHHHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGSCTT
T ss_pred CEEEEeCCChhHHHHHHHHHhC----------CCCEEEEEeCCHHHHHHHHHHHHHcCCC-----eEEEEeCChHhcCcc
Confidence 3699999999999999998764 3578999999999999999999887764 799999998776432
Q ss_pred C---CCeeEEEEccc------ccccc-----------CH-------HHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 S---DSYSAYTIAFG------IRNVT-----------RI-------DKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~---~~~D~i~~~~~------l~~~~-----------~~-------~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. .+||.|++... +..-+ +. ..+|..+.++++ ||+++...++-
T Consensus 169 ~~~~~~fD~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~ 237 (309)
T 2b9e_A 169 DPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL 237 (309)
T ss_dssp CGGGTTEEEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred ccccCCCCEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence 1 57999997322 11101 11 235666777776 89988766553
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=86.83 Aligned_cols=115 Identities=10% Similarity=-0.048 Sum_probs=80.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCC--CCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE--HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|.+...+++.+.+........ ....+++|+|+++.++..|+.++...+... .+..+..+|....+.
T Consensus 174 ~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~---~~~~i~~gD~l~~~~ 250 (445)
T 2okc_A 174 TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT---DRSPIVCEDSLEKEP 250 (445)
T ss_dssp CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS---SCCSEEECCTTTSCC
T ss_pred EEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc---CCCCEeeCCCCCCcc
Confidence 699999999999988888753211000000 013579999999999999999887666431 146778888766543
Q ss_pred CCCCeeEEEEccccccccC-----------------HHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTR-----------------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~-----------------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .+||+|+++..+..... ...++.++.++|+|||++.++-
T Consensus 251 ~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~ 307 (445)
T 2okc_A 251 S-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 307 (445)
T ss_dssp S-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred c-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEE
Confidence 2 48999999755443211 1378999999999999988765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-10 Score=82.04 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=83.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCC---------------------------CCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS---------------------------EHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~---------------------------~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
.+||.+||+|.+.+.++....+.+++... .....+++++|+++.+++.++++.
T Consensus 197 ~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~Na 276 (384)
T 3ldg_A 197 PFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARKNA 276 (384)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHHHH
T ss_pred eEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHHHH
Confidence 58999999999988887765432211000 001256999999999999999999
Q ss_pred hhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccc--ccc--ccCHHHHHHHHHHhccC--CcEEEEEec
Q psy890 55 RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFG--IRN--VTRIDKALSEAYRVLKP--GGRFLCLEF 121 (131)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~--l~~--~~~~~~~l~~~~~~L~p--~G~l~~~~~ 121 (131)
...++.+ ++.+...|+.+.+.+ .+||+|+++-. ... -.+...++.++.+.|++ ||.++++..
T Consensus 277 ~~~gl~~----~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 344 (384)
T 3ldg_A 277 REVGLED----VVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFILTN 344 (384)
T ss_dssp HHTTCTT----TEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred HHcCCCC----ceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEEEEC
Confidence 9888764 799999999987654 48999999743 321 13455666777777765 888877653
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.25 E-value=4.2e-11 Score=79.99 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=56.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.++..++++..... +++++.+|+.+.+++.
T Consensus 33 ~VLDiG~G~G~lt~~l~~~-------------~~~v~~vD~~~~~~~~a~~~~~~~~-------~v~~~~~D~~~~~~~~ 92 (244)
T 1qam_A 33 NIFEIGSGKGHFTLELVQR-------------CNFVTAIEIDHKLCKTTENKLVDHD-------NFQVLNKDILQFKFPK 92 (244)
T ss_dssp EEEEECCTTSHHHHHHHHH-------------SSEEEEECSCHHHHHHHHHHTTTCC-------SEEEECCCGGGCCCCS
T ss_pred EEEEEeCCchHHHHHHHHc-------------CCeEEEEECCHHHHHHHHHhhccCC-------CeEEEEChHHhCCccc
Confidence 6899999999999999886 4689999999999999999886432 8999999999887653
Q ss_pred -CCeeEEEEc
Q psy890 82 -DSYSAYTIA 90 (131)
Q Consensus 82 -~~~D~i~~~ 90 (131)
..|+ |+++
T Consensus 93 ~~~~~-vv~n 101 (244)
T 1qam_A 93 NQSYK-IFGN 101 (244)
T ss_dssp SCCCE-EEEE
T ss_pred CCCeE-EEEe
Confidence 4563 4444
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=2e-11 Score=83.37 Aligned_cols=92 Identities=10% Similarity=0.047 Sum_probs=66.1
Q ss_pred Cceeeeeccc------chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeE-Eecc
Q psy890 1 MYILFYLVFP------GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRF-LEAN 73 (131)
Q Consensus 1 ~~iLdig~G~------G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d 73 (131)
++|||+|||+ |. ..+++..+ ...+++++|+++. + . ++++ +.+|
T Consensus 65 ~~VLDLGcGsg~~~GpGs--~~~a~~~~----------~~~~V~gvDis~~--------v-----~-----~v~~~i~gD 114 (290)
T 2xyq_A 65 MRVIHFGAGSDKGVAPGT--AVLRQWLP----------TGTLLVDSDLNDF--------V-----S-----DADSTLIGD 114 (290)
T ss_dssp CEEEEESCCCTTSBCHHH--HHHHHHSC----------TTCEEEEEESSCC--------B-----C-----SSSEEEESC
T ss_pred CEEEEeCCCCCCCCCcHH--HHHHHHcC----------CCCEEEEEECCCC--------C-----C-----CCEEEEECc
Confidence 4699999955 55 33444443 2578999999986 1 1 6788 9999
Q ss_pred cccCCCCCCCeeEEEEccccccc-----------cCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 74 AEELPIESDSYSAYTIAFGIRNV-----------TRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 74 ~~~~~~~~~~~D~i~~~~~l~~~-----------~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+.+.++. ++||+|+++...+.. .....++.++.++|||||.+++..+..
T Consensus 115 ~~~~~~~-~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~ 174 (290)
T 2xyq_A 115 CATVHTA-NKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEH 174 (290)
T ss_dssp GGGCCCS-SCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSS
T ss_pred cccCCcc-CcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 9886644 679999996432211 113578999999999999999866544
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=6.8e-11 Score=84.72 Aligned_cols=94 Identities=13% Similarity=0.071 Sum_probs=72.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+|+.+++.++++....+. .++++..|+.+...
T Consensus 293 ~VLDlgcG~G~~sl~la~~-------------~~~V~gvD~s~~ai~~A~~n~~~ngl------~v~~~~~d~~~~~~-- 351 (425)
T 2jjq_A 293 KILDMYSGVGTFGIYLAKR-------------GFNVKGFDSNEFAIEMARRNVEINNV------DAEFEVASDREVSV-- 351 (425)
T ss_dssp EEEEETCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHHTC------CEEEEECCTTTCCC--
T ss_pred EEEEeeccchHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHcCC------cEEEEECChHHcCc--
Confidence 6899999999999998875 46899999999999999999877552 38899999887642
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.+||+|++...-... ....+..+ +.|+|+|++++.
T Consensus 352 ~~fD~Vv~dPPr~g~--~~~~~~~l-~~l~p~givyvs 386 (425)
T 2jjq_A 352 KGFDTVIVDPPRAGL--HPRLVKRL-NREKPGVIVYVS 386 (425)
T ss_dssp TTCSEEEECCCTTCS--CHHHHHHH-HHHCCSEEEEEE
T ss_pred cCCCEEEEcCCccch--HHHHHHHH-HhcCCCcEEEEE
Confidence 279999985442211 12344444 458999998875
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.25 E-value=8e-11 Score=83.41 Aligned_cols=115 Identities=10% Similarity=0.045 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCC---------------------------CCCCCeEEEEeCCHHHHHHHHHHh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLS---------------------------EHCAPHVTVADINRAMLDVGEQRA 54 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~---------------------------~~~~~~~~~~D~s~~~~~~~~~~~ 54 (131)
.+||++||+|.+.+.++....+.+++... .....+++|+|+++.+++.++++.
T Consensus 198 ~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~Na 277 (385)
T 3ldu_A 198 VLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARENA 277 (385)
T ss_dssp CEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHHHH
T ss_pred eEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHHHH
Confidence 68999999999988887764322111000 001257999999999999999999
Q ss_pred hhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccc--c--ccCHHHHHHHHHHhccC--CcEEEEEec
Q psy890 55 RDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIR--N--VTRIDKALSEAYRVLKP--GGRFLCLEF 121 (131)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~--~--~~~~~~~l~~~~~~L~p--~G~l~~~~~ 121 (131)
...++.+ ++++...|+.+++.+ .+||+|+++-... . ..+....+.++.+.|++ |+.++++..
T Consensus 278 ~~~gl~~----~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~iit~ 345 (385)
T 3ldu_A 278 EIAGVDE----YIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYLITS 345 (385)
T ss_dssp HHHTCGG----GEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEEEES
T ss_pred HHcCCCC----ceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 8887654 799999999887643 5899999964432 1 12455666777777766 888777653
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.22 E-value=2e-11 Score=86.00 Aligned_cols=99 Identities=11% Similarity=0.096 Sum_probs=75.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.|||+|||+|.++..+++. ..+|+++|+++.+++.++++.+..+.. +++++..|+.+.. .
T Consensus 216 ~vLDl~cG~G~~~l~la~~-------------~~~V~gvd~~~~ai~~a~~n~~~ng~~-----~v~~~~~d~~~~~~~~ 277 (369)
T 3bt7_A 216 DLLELYCGNGNFSLALARN-------------FDRVLATEIAKPSVAAAQYNIAANHID-----NVQIIRMAAEEFTQAM 277 (369)
T ss_dssp EEEEESCTTSHHHHHHGGG-------------SSEEEEECCCHHHHHHHHHHHHHTTCC-----SEEEECCCSHHHHHHH
T ss_pred EEEEccCCCCHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHHHHHcCCC-----ceEEEECCHHHHHHHH
Confidence 5899999999999988774 468999999999999999999887764 8999999977642 1
Q ss_pred CC--------------CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ES--------------DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ~~--------------~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.. .+||+|++.-.-. ....++.+.|+++|.++.+++...
T Consensus 278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~------g~~~~~~~~l~~~g~ivyvsc~p~ 330 (369)
T 3bt7_A 278 NGVREFNRLQGIDLKSYQCETIFVDPPRS------GLDSETEKMVQAYPRILYISCNPE 330 (369)
T ss_dssp SSCCCCTTGGGSCGGGCCEEEEEECCCTT------CCCHHHHHHHTTSSEEEEEESCHH
T ss_pred hhccccccccccccccCCCCEEEECcCcc------ccHHHHHHHHhCCCEEEEEECCHH
Confidence 11 3799998753211 123456667779999988876643
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5e-11 Score=84.23 Aligned_cols=98 Identities=16% Similarity=0.033 Sum_probs=78.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc---------------cCCCCCCCc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL---------------FKVPVPNPR 66 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~---------------~~~~~~~~~ 66 (131)
+|||+|||+|..+..++...+ ..+++++|+++.+++.++++++.. +.. +
T Consensus 50 ~VLDl~aGtG~~~l~~a~~~~-----------~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-----~ 113 (378)
T 2dul_A 50 IVLDALSATGIRGIRFALETP-----------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-----T 113 (378)
T ss_dssp EEEESSCTTSHHHHHHHHHSS-----------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-----E
T ss_pred EEEECCCchhHHHHHHHHhCC-----------CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-----c
Confidence 689999999999999998754 467999999999999999999876 543 5
Q ss_pred eeEEecccccCC-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 67 LRFLEANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 67 ~~~~~~d~~~~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++++..|+.... ...+.||+|++.-. .....++..+.+.|+|||+++++
T Consensus 114 i~v~~~Da~~~~~~~~~~fD~I~lDP~----~~~~~~l~~a~~~lk~gG~l~vt 163 (378)
T 2dul_A 114 IVINHDDANRLMAERHRYFHFIDLDPF----GSPMEFLDTALRSAKRRGILGVT 163 (378)
T ss_dssp EEEEESCHHHHHHHSTTCEEEEEECCS----SCCHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEEcCcHHHHHHhccCCCCEEEeCCC----CCHHHHHHHHHHhcCCCCEEEEE
Confidence 889999977642 11357999996431 12357788899999999988765
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=7.3e-11 Score=83.65 Aligned_cols=101 Identities=13% Similarity=0.032 Sum_probs=80.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCc-eeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPR-LRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~-- 78 (131)
+|||++||+|..+..++.... ...+++++|+++.+++.++++++.+++.+ + ++++..|+.+.-
T Consensus 55 ~VLDlfaGtG~~sl~aa~~~~----------ga~~V~avDi~~~av~~~~~N~~~Ngl~~----~~v~v~~~Da~~~l~~ 120 (392)
T 3axs_A 55 KVADPLSASGIRAIRFLLETS----------CVEKAYANDISSKAIEIMKENFKLNNIPE----DRYEIHGMEANFFLRK 120 (392)
T ss_dssp EEEESSCTTSHHHHHHHHHCS----------CEEEEEEECSCHHHHHHHHHHHHHTTCCG----GGEEEECSCHHHHHHS
T ss_pred EEEECCCcccHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHHHHHHHhCCCC----ceEEEEeCCHHHHHHH
Confidence 589999999999999988643 13689999999999999999999888763 5 999999976542
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+.||+|++.- ......++..+.+.|+|||++++..
T Consensus 121 ~~~~~fD~V~lDP----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 121 EWGFGFDYVDLDP----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CCSSCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhCCCCcEEEECC----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 1245799999865 1223568888999999999776643
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=5.9e-11 Score=84.54 Aligned_cols=96 Identities=18% Similarity=0.085 Sum_probs=72.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++... ...+++++|+++.+++.+ . ++.++..|+.... ..
T Consensus 42 ~vLD~gcGtG~~~~~~~~~~~----------~~~~i~gvDi~~~~~~~a-------~-------~~~~~~~D~~~~~-~~ 96 (421)
T 2ih2_A 42 RVLEPACAHGPFLRAFREAHG----------TAYRFVGVEIDPKALDLP-------P-------WAEGILADFLLWE-PG 96 (421)
T ss_dssp EEEEETCTTCHHHHHHHHHHC----------SCSEEEEEESCTTTCCCC-------T-------TEEEEESCGGGCC-CS
T ss_pred EEEECCCCChHHHHHHHHHhC----------CCCeEEEEECCHHHHHhC-------C-------CCcEEeCChhhcC-cc
Confidence 689999999999999988763 257899999999888665 1 7889999987754 34
Q ss_pred CCeeEEEEcccccc----------c-cC------------------HHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRN----------V-TR------------------IDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~----------~-~~------------------~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|+++-.... + .+ ...++.++.++|+|||++.++-..
T Consensus 97 ~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 97 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred CCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 68999999633211 1 11 125688999999999998876543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.15 E-value=2.6e-12 Score=85.80 Aligned_cols=96 Identities=9% Similarity=0.092 Sum_probs=71.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+++.+++.++++.... .+++++..|+.+.+++.
T Consensus 32 ~VLDiG~G~G~~~~~l~~~-------------~~~v~~id~~~~~~~~a~~~~~~~-------~~v~~~~~D~~~~~~~~ 91 (245)
T 1yub_A 32 TVYEIGTGKGHLTTKLAKI-------------SKQVTSIELDSHLFNLSSEKLKLN-------TRVTLIHQDILQFQFPN 91 (245)
T ss_dssp EEEECSCCCSSCSHHHHHH-------------SSEEEESSSSCSSSSSSSCTTTTC-------SEEEECCSCCTTTTCCC
T ss_pred EEEEEeCCCCHHHHHHHHh-------------CCeEEEEECCHHHHHHHHHHhccC-------CceEEEECChhhcCccc
Confidence 6899999999999999886 468999999999999888776521 28999999999887653
Q ss_pred -CCeeEEEEcccccc-----------ccCHHHHH----HHHHHhccCCcEEEE
Q psy890 82 -DSYSAYTIAFGIRN-----------VTRIDKAL----SEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 -~~~D~i~~~~~l~~-----------~~~~~~~l----~~~~~~L~p~G~l~~ 118 (131)
++| .|+++...+. .......+ +.+.++|+|||.+.+
T Consensus 92 ~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v 143 (245)
T 1yub_A 92 KQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGL 143 (245)
T ss_dssp SSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHH
T ss_pred CCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhh
Confidence 578 5666432211 11222233 568899999998765
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-10 Score=77.19 Aligned_cols=69 Identities=7% Similarity=0.100 Sum_probs=57.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|||+|||+|.++..+++. ..+++++|+++.++..+++++.... +++++.+|+.+++++
T Consensus 32 ~VLEIG~G~G~lt~~La~~-------------~~~V~avEid~~~~~~~~~~~~~~~-------~v~~i~~D~~~~~~~~ 91 (255)
T 3tqs_A 32 TLVEIGPGRGALTDYLLTE-------------CDNLALVEIDRDLVAFLQKKYNQQK-------NITIYQNDALQFDFSS 91 (255)
T ss_dssp EEEEECCTTTTTHHHHTTT-------------SSEEEEEECCHHHHHHHHHHHTTCT-------TEEEEESCTTTCCGGG
T ss_pred EEEEEcccccHHHHHHHHh-------------CCEEEEEECCHHHHHHHHHHHhhCC-------CcEEEEcchHhCCHHH
Confidence 6899999999999999886 4689999999999999999886522 899999999887653
Q ss_pred ---CCCeeEEEEcc
Q psy890 81 ---SDSYSAYTIAF 91 (131)
Q Consensus 81 ---~~~~D~i~~~~ 91 (131)
.++|| |+++.
T Consensus 92 ~~~~~~~~-vv~Nl 104 (255)
T 3tqs_A 92 VKTDKPLR-VVGNL 104 (255)
T ss_dssp SCCSSCEE-EEEEC
T ss_pred hccCCCeE-EEecC
Confidence 35688 55543
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.5e-10 Score=84.27 Aligned_cols=103 Identities=10% Similarity=-0.046 Sum_probs=75.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|-++...++...... ...+|+++|.|+ +...+++..+.+++.+ +++++.+|++++..+
T Consensus 360 vVldVGaGrGpLv~~al~A~a~~~-------~~vkVyAVEknp-~A~~a~~~v~~N~~~d----kVtVI~gd~eev~LP- 426 (637)
T 4gqb_A 360 VLMVLGAGRGPLVNASLRAAKQAD-------RRIKLYAVEKNP-NAVVTLENWQFEEWGS----QVTVVSSDMREWVAP- 426 (637)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTT-------CEEEEEEEESCH-HHHHHHHHHHHHTTGG----GEEEEESCTTTCCCS-
T ss_pred EEEEECCCCcHHHHHHHHHHHhcC-------CCcEEEEEECCH-HHHHHHHHHHhccCCC----eEEEEeCcceeccCC-
Confidence 589999999999665555432100 245899999987 6667788888888876 899999999998655
Q ss_pred CCeeEEEEccccc--cccCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIR--NVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~--~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+++|+||+=++=. ..+.....+....+.|||||+++
T Consensus 427 EKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 427 EKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp SCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred cccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 6799999833211 11223467788889999999875
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.9e-09 Score=69.97 Aligned_cols=94 Identities=12% Similarity=-0.048 Sum_probs=71.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC--CCCCCCceeEEecccccC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK--VPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~d~~~~-- 77 (131)
+|||+|| |..+..+++. ...+++.+|.+++..+.++++++..++ .+ ++.++.+|+.+.
T Consensus 33 ~VLEiGt--GySTl~lA~~------------~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~----~I~~~~gda~~~~~ 94 (202)
T 3cvo_A 33 VILEYGS--GGSTVVAAEL------------PGKHVTSVESDRAWARMMKAWLAANPPAEGT----EVNIVWTDIGPTGD 94 (202)
T ss_dssp EEEEESC--SHHHHHHHTS------------TTCEEEEEESCHHHHHHHHHHHHHSCCCTTC----EEEEEECCCSSBCG
T ss_pred EEEEECc--hHHHHHHHHc------------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCCC----ceEEEEeCchhhhc
Confidence 6899998 4566666652 147899999999999999999998876 54 899998885432
Q ss_pred -------------C--------C-CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 78 -------------P--------I-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 -------------~--------~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
+ . ..++||+|+.-.. .....+..+.+.|+|||++++
T Consensus 95 wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 95 WGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp GGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEE
T ss_pred ccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEE
Confidence 1 1 1367999998653 234666778899999999966
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-10 Score=78.32 Aligned_cols=125 Identities=9% Similarity=0.050 Sum_probs=79.6
Q ss_pred CceeeeecccchhhHHHhhhhcC----CCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-------CCCC--CCc-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDK----LPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-------VPVP--NPR- 66 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-------~~~~--~~~- 66 (131)
++|+|+||++|.++..+...+-+ .........+..++..-|...+.....-+.++...- .... .+.
T Consensus 54 ~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~f 133 (374)
T 3b5i_A 54 FTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSYF 133 (374)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCSE
T ss_pred eEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCceE
Confidence 36999999999998887443210 000000012468899999888777666555543210 0000 001
Q ss_pred eeEEecccccCCCCCCCeeEEEEcccccccc--------------------------------------CHHHHHHHHHH
Q psy890 67 LRFLEANAEELPIESDSYSAYTIAFGIRNVT--------------------------------------RIDKALSEAYR 108 (131)
Q Consensus 67 ~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~--------------------------------------~~~~~l~~~~~ 108 (131)
+.-+..++-.-.++.+++|+|++++++||++ |...+|+...+
T Consensus 134 ~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~ 213 (374)
T 3b5i_A 134 VAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAA 213 (374)
T ss_dssp EEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223444444457889999999999999987 33456888899
Q ss_pred hccCCcEEEEEeccCCC
Q psy890 109 VLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 109 ~L~p~G~l~~~~~~~~~ 125 (131)
.|+|||++++.-.++..
T Consensus 214 eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 214 EVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HEEEEEEEEEEEEECCC
T ss_pred HhCCCCEEEEEEecCCC
Confidence 99999999987666544
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-10 Score=76.23 Aligned_cols=72 Identities=15% Similarity=0.070 Sum_probs=60.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+++.++..+++++.. . +++++.+|+.+.+++.
T Consensus 49 ~VLEIG~G~G~lt~~L~~~-------------~~~V~avEid~~~~~~l~~~~~~-~-------~v~vi~~D~l~~~~~~ 107 (271)
T 3fut_A 49 PVFEVGPGLGALTRALLEA-------------GAEVTAIEKDLRLRPVLEETLSG-L-------PVRLVFQDALLYPWEE 107 (271)
T ss_dssp CEEEECCTTSHHHHHHHHT-------------TCCEEEEESCGGGHHHHHHHTTT-S-------SEEEEESCGGGSCGGG
T ss_pred eEEEEeCchHHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHhcCC-C-------CEEEEECChhhCChhh
Confidence 5899999999999999886 46899999999999999998763 2 8999999998887653
Q ss_pred -CCeeEEEEccccc
Q psy890 82 -DSYSAYTIAFGIR 94 (131)
Q Consensus 82 -~~~D~i~~~~~l~ 94 (131)
..+|.|+++...+
T Consensus 108 ~~~~~~iv~NlPy~ 121 (271)
T 3fut_A 108 VPQGSLLVANLPYH 121 (271)
T ss_dssp SCTTEEEEEEECSS
T ss_pred ccCccEEEecCccc
Confidence 2688888876544
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.6e-10 Score=83.19 Aligned_cols=120 Identities=7% Similarity=-0.143 Sum_probs=80.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCC-------CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEH-------CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 73 (131)
.+|||.+||+|.+...+++.+........... ...+++|+|+++.++..|+.++...+....+..+..+...|
T Consensus 171 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~gD 250 (541)
T 2ar0_A 171 EVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGN 250 (541)
T ss_dssp CCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESC
T ss_pred CeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEeCC
Confidence 36999999999999888887642210000000 02479999999999999999887655431000016778888
Q ss_pred cccCC-CCCCCeeEEEEcccccccc-------------C-HHHHHHHHHHhccCCcEEEEEe
Q psy890 74 AEELP-IESDSYSAYTIAFGIRNVT-------------R-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 74 ~~~~~-~~~~~~D~i~~~~~l~~~~-------------~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+ ....+||+|+++-.+.... + ...++.++.+.|+|||++.++-
T Consensus 251 tL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~ 312 (541)
T 2ar0_A 251 TLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 312 (541)
T ss_dssp TTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEe
Confidence 65432 3346799999975543221 1 2378999999999999988764
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=2.3e-09 Score=81.13 Aligned_cols=116 Identities=12% Similarity=0.056 Sum_probs=80.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCC-------------------------------CCCCeEEEEeCCHHHHHHH
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE-------------------------------HCAPHVTVADINRAMLDVG 50 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~-------------------------------~~~~~~~~~D~s~~~~~~~ 50 (131)
.+||.+||+|.+.+.++....+.+++.... ....+++|+|+++.++..|
T Consensus 193 ~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~~A 272 (703)
T 3v97_A 193 PLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRA 272 (703)
T ss_dssp CEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHHHH
T ss_pred eEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHHHH
Confidence 589999999999888877643222221100 0125799999999999999
Q ss_pred HHHhhhccCCCCCCCceeEEecccccCCCC--CCCeeEEEEc--cccccc--cCHHH---HHHHHHHhccCCcEEEEEec
Q psy890 51 EQRARDLFKVPVPNPRLRFLEANAEELPIE--SDSYSAYTIA--FGIRNV--TRIDK---ALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~--~~~~D~i~~~--~~l~~~--~~~~~---~l~~~~~~L~p~G~l~~~~~ 121 (131)
+++....++.+ .+.+...|+.++..+ .++||+|+++ ++...- .+... .+.+..+.+.|||.++++..
T Consensus 273 ~~N~~~agv~~----~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~ 348 (703)
T 3v97_A 273 RTNARLAGIGE----LITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA 348 (703)
T ss_dssp HHHHHHTTCGG----GEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHcCCCC----ceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence 99999888764 699999999887422 3379999997 333221 12333 34455555568999888653
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.1e-09 Score=74.67 Aligned_cols=103 Identities=14% Similarity=0.145 Sum_probs=79.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc---cCCCCCCCceeEEecccccC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL---FKVPVPNPRLRFLEANAEEL- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~- 77 (131)
+||-+|.|.|...+.+++..+ ..+++.+|+++.+++.+++.++.. .+.+ ++++++..|....
T Consensus 86 ~VLIiGgGdG~~~revlk~~~-----------v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~d---pRv~v~~~Dg~~~l 151 (294)
T 3o4f_A 86 HVLIIGGGDGAMLREVTRHKN-----------VESITMVEIDAGVVSFCRQYLPNHNAGSYDD---PRFKLVIDDGVNFV 151 (294)
T ss_dssp EEEEESCTTSHHHHHHHTCTT-----------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGC---TTEEEEESCTTTTT
T ss_pred eEEEECCCchHHHHHHHHcCC-----------cceEEEEcCCHHHHHHHHhcCccccccccCC---CcEEEEechHHHHH
Confidence 589999999999999988753 678999999999999999887542 2333 4899999997765
Q ss_pred CCCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~ 118 (131)
....++||+|+.-..-...+ --..+++.+++.|+|||++..
T Consensus 152 ~~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 152 NQTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp SCSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred hhccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 33457899999853311111 125789999999999999976
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=99.04 E-value=6e-10 Score=83.45 Aligned_cols=111 Identities=13% Similarity=-0.028 Sum_probs=72.9
Q ss_pred ceeeeecccchhhHHHhhhhc-CCCCCCCC-CCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVD-KLPPNTLS-EHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|||+|||+|-++...++... .....+.. .....+|+++|.|+.+....+.+.. .++.+ +++++.+|++++..
T Consensus 412 VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d----~VtVI~gd~eev~l 486 (745)
T 3ua3_A 412 VIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKR----RVTIIESDMRSLPG 486 (745)
T ss_dssp EEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTT----CSEEEESCGGGHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCC----eEEEEeCchhhccc
Confidence 589999999999754433321 00000000 0014599999999977766555544 56664 89999999998765
Q ss_pred C-----CCCeeEEEEccccccc--cCHHHHHHHHHHhccCCcEEE
Q psy890 80 E-----SDSYSAYTIAFGIRNV--TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 80 ~-----~~~~D~i~~~~~l~~~--~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+ .+++|+|++=+.=... +-....|....+.|||||+++
T Consensus 487 p~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 487 IAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcEEE
Confidence 3 5789999995442221 223456777789999999875
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=6.3e-10 Score=78.54 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=72.7
Q ss_pred CceeeeecccchhhHHHhhhh----cCCCCC--CCCCCCCCeEEEEeCCHHHHHHHHHHhh-------h-ccCCCCCCCc
Q psy890 1 MYILFYLVFPGDIAFRFLNYV----DKLPPN--TLSEHCAPHVTVADINRAMLDVGEQRAR-------D-LFKVPVPNPR 66 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~----~~~~~~--~~~~~~~~~~~~~D~s~~~~~~~~~~~~-------~-~~~~~~~~~~ 66 (131)
++|+|+||++|.++..+...+ .+.... .....+..++..-|...+-....-+.++ . .+... .
T Consensus 54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~----~ 129 (384)
T 2efj_A 54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKI----G 129 (384)
T ss_dssp EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCT----T
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCC----C
Confidence 369999999999988877652 222111 0011246789999987322221111111 1 11000 2
Q ss_pred eeEE---ecccccCCCCCCCeeEEEEccccccccCHH---------------------------------------HHHH
Q psy890 67 LRFL---EANAEELPIESDSYSAYTIAFGIRNVTRID---------------------------------------KALS 104 (131)
Q Consensus 67 ~~~~---~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~---------------------------------------~~l~ 104 (131)
--|+ .+++-.-.++.+++|+|++++++||+.+.. .+|.
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 2333 333433458889999999999999986432 1255
Q ss_pred HHHHhccCCcEEEEEeccCCCc
Q psy890 105 EAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 105 ~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
...+.|+|||++++.-.++...
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTT
T ss_pred HHHHHhccCCeEEEEEecCCCc
Confidence 5589999999999877666543
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=6.1e-10 Score=76.46 Aligned_cols=75 Identities=15% Similarity=0.262 Sum_probs=62.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
++||+|||+|..+..+++..+ ..+++++|.|+.+++.++++....+ + +++++..|+..++ +
T Consensus 29 ~vLD~g~G~G~~s~~la~~~~-----------~~~VigvD~d~~al~~A~~~~~~~g--~----~v~~v~~d~~~l~~~l 91 (301)
T 1m6y_A 29 IILDCTVGEGGHSRAILEHCP-----------GCRIIGIDVDSEVLRIAEEKLKEFS--D----RVSLFKVSYREADFLL 91 (301)
T ss_dssp EEEETTCTTSHHHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHTGGGT--T----TEEEEECCGGGHHHHH
T ss_pred EEEEEeCCcCHHHHHHHHHCC-----------CCEEEEEECCHHHHHHHHHHHHhcC--C----cEEEEECCHHHHHHHH
Confidence 689999999999999998853 5789999999999999999987765 2 8999999988764 1
Q ss_pred C---CCCeeEEEEcccc
Q psy890 80 E---SDSYSAYTIAFGI 93 (131)
Q Consensus 80 ~---~~~~D~i~~~~~l 93 (131)
. ..+||.|++...+
T Consensus 92 ~~~g~~~~D~Vl~D~gv 108 (301)
T 1m6y_A 92 KTLGIEKVDGILMDLGV 108 (301)
T ss_dssp HHTTCSCEEEEEEECSC
T ss_pred HhcCCCCCCEEEEcCcc
Confidence 1 1579999986543
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=99.00 E-value=4.4e-10 Score=78.74 Aligned_cols=123 Identities=9% Similarity=0.008 Sum_probs=82.6
Q ss_pred CceeeeecccchhhHHHhhhh----cCCC-CCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCc--eeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYV----DKLP-PNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPR--LRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~----~~~~-~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d 73 (131)
++|+|+||++|.++..+...+ .+.. ..+....+..++..-|...+....+.+.++...... .. +.-+.++
T Consensus 53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~---~~~f~~gvpgS 129 (359)
T 1m6e_X 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVD---GVCFINGVPGS 129 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCT---TCEEEEEEESC
T ss_pred eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccC---CCEEEEecchh
Confidence 368999999999988765542 1100 000001246899999999988888877765422100 01 2233444
Q ss_pred cccCCCCCCCeeEEEEccccccccCH---------------------------------HHHHHHHHHhccCCcEEEEEe
Q psy890 74 AEELPIESDSYSAYTIAFGIRNVTRI---------------------------------DKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 74 ~~~~~~~~~~~D~i~~~~~l~~~~~~---------------------------------~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+-.-.++.+++|+|++++++||+.+. ..+|+...+.|+|||++++.-
T Consensus 130 Fy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 44445888999999999999998642 234888899999999998876
Q ss_pred ccCCCc
Q psy890 121 FSHVNN 126 (131)
Q Consensus 121 ~~~~~~ 126 (131)
.++...
T Consensus 210 ~gr~~~ 215 (359)
T 1m6e_X 210 LGRRSE 215 (359)
T ss_dssp EECSSS
T ss_pred ecCCCC
Confidence 665543
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.6e-10 Score=80.44 Aligned_cols=71 Identities=11% Similarity=-0.020 Sum_probs=59.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+|||+|||+|..+..+++. ..+|+++|+|+.++..+++++... +.. +++++..|+.+. +
T Consensus 96 ~VLDLgcG~G~~al~LA~~-------------g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~-----~i~~i~~Da~~~L~ 157 (410)
T 3ll7_A 96 KVVDLTGGLGIDFIALMSK-------------ASQGIYIERNDETAVAARHNIPLLLNEGK-----DVNILTGDFKEYLP 157 (410)
T ss_dssp EEEESSCSSSHHHHHHHTT-------------CSEEEEEESCHHHHHHHHHHHHHHSCTTC-----EEEEEESCGGGSHH
T ss_pred EEEEeCCCchHHHHHHHhc-------------CCEEEEEECCHHHHHHHHHhHHHhccCCC-----cEEEEECcHHHhhh
Confidence 6899999999999887765 568999999999999999999876 542 899999998874 2
Q ss_pred -CCCCCeeEEEEc
Q psy890 79 -IESDSYSAYTIA 90 (131)
Q Consensus 79 -~~~~~~D~i~~~ 90 (131)
...++||+|++.
T Consensus 158 ~~~~~~fDvV~lD 170 (410)
T 3ll7_A 158 LIKTFHPDYIYVD 170 (410)
T ss_dssp HHHHHCCSEEEEC
T ss_pred hccCCCceEEEEC
Confidence 123579999995
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.5e-10 Score=76.82 Aligned_cols=76 Identities=12% Similarity=-0.019 Sum_probs=60.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH-------HHHHHHHHHhhhccCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR-------AMLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
+|||+|||+|..+..++.. +.+|+++|+++ .+++.++++.+..+... +++++..|.
T Consensus 86 ~VLDlgcG~G~~a~~lA~~-------------g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~----ri~~~~~d~ 148 (258)
T 2r6z_A 86 TVWDATAGLGRDSFVLASL-------------GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAA----RINLHFGNA 148 (258)
T ss_dssp CEEETTCTTCHHHHHHHHT-------------TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHT----TEEEEESCH
T ss_pred eEEEeeCccCHHHHHHHHh-------------CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCcc----CeEEEECCH
Confidence 6899999999999998885 45899999999 99999988876654432 599999998
Q ss_pred ccC-C-CCC--CCeeEEEEccccc
Q psy890 75 EEL-P-IES--DSYSAYTIAFGIR 94 (131)
Q Consensus 75 ~~~-~-~~~--~~~D~i~~~~~l~ 94 (131)
.+. + ++. ++||+|++...+.
T Consensus 149 ~~~l~~~~~~~~~fD~V~~dP~~~ 172 (258)
T 2r6z_A 149 AEQMPALVKTQGKPDIVYLDPMYP 172 (258)
T ss_dssp HHHHHHHHHHHCCCSEEEECCCC-
T ss_pred HHHHHhhhccCCCccEEEECCCCC
Confidence 764 2 333 6799999965443
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.90 E-value=3.7e-08 Score=72.55 Aligned_cols=109 Identities=10% Similarity=-0.003 Sum_probs=80.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~- 78 (131)
+|+|.+||+|.+...+++.+... ...+++|+|+++.++..|+.++...+... .+..+..+|.... +
T Consensus 224 ~VlDPaCGSG~fLi~a~~~l~~~--------~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~---~~~~I~~gDtL~~d~p~ 292 (542)
T 3lkd_A 224 TLYDATMGSGSLLLNAKRYSRQP--------QTVVYFGQELNTSTYNLARMNMILHGVPI---ENQFLHNADTLDEDWPT 292 (542)
T ss_dssp EEEETTCTTSTTGGGHHHHCSCT--------TTCEEEEEESCHHHHHHHHHHHHHTTCCG---GGEEEEESCTTTSCSCC
T ss_pred EEeecccchhHHHHHHHHHHHhc--------cCceEEEEECcHHHHHHHHHHHHHcCCCc---CccceEecceecccccc
Confidence 69999999999998888876411 25689999999999999999887666531 1578888886654 3
Q ss_pred CCCCCeeEEEEcccc--cc-----------------cc---C-HHHHHHHHHHhcc-CCcEEEEEec
Q psy890 79 IESDSYSAYTIAFGI--RN-----------------VT---R-IDKALSEAYRVLK-PGGRFLCLEF 121 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l--~~-----------------~~---~-~~~~l~~~~~~L~-p~G~l~~~~~ 121 (131)
.....||+|+++-.. .+ ++ + --.++.++.+.|+ |||++.++-.
T Consensus 293 ~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 293 QEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp SSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred cccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 345789999996332 11 00 0 1247999999999 9999877643
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.4e-09 Score=70.71 Aligned_cols=60 Identities=12% Similarity=0.052 Sum_probs=50.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCC-CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+|||+|||+|.++..+++... . ..+++++|+++.+++.++++. .. +++++.+|+.+++++
T Consensus 45 ~VLEIG~G~G~lt~~La~~~~----------~~~~~V~avDid~~~l~~a~~~~--~~-------~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 45 RMVEIGPGLGALTGPVIARLA----------TPGSPLHAVELDRDLIGRLEQRF--GE-------LLELHAGDALTFDFG 105 (279)
T ss_dssp EEEEECCTTSTTHHHHHHHHC----------BTTBCEEEEECCHHHHHHHHHHH--GG-------GEEEEESCGGGCCGG
T ss_pred EEEEEccccHHHHHHHHHhCC----------CcCCeEEEEECCHHHHHHHHHhc--CC-------CcEEEECChhcCChh
Confidence 699999999999999998743 1 245999999999999999883 22 899999999887653
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.86 E-value=9e-09 Score=75.85 Aligned_cols=115 Identities=8% Similarity=-0.149 Sum_probs=76.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCC----CCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTL----SEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
+|||.+||||.+...+++.+........ .......++|+|+++.++..|+.++...+... ++.+..+|....
T Consensus 247 ~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~----~i~i~~gDtL~~ 322 (544)
T 3khk_A 247 RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDF----NFGKKNADSFLD 322 (544)
T ss_dssp EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCC----BCCSSSCCTTTS
T ss_pred eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCc----ccceeccchhcC
Confidence 5899999999998877665421000000 00003579999999999999999887766543 444467775443
Q ss_pred C-CCCCCeeEEEEcccccc-------------------------cc---C-HHHHHHHHHHhccCCcEEEEEe
Q psy890 78 P-IESDSYSAYTIAFGIRN-------------------------VT---R-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~-~~~~~~D~i~~~~~l~~-------------------------~~---~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ ....+||+|+++-.+.. .+ + --.++.++.+.|+|||++.++-
T Consensus 323 ~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 323 DQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp CSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 3 44578999999643321 11 1 1268999999999999987764
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=2e-08 Score=67.24 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=49.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+|||+|||+|.++..+++. +..+++++|+++.++..++++ . . .+++++.+|+.+++++
T Consensus 34 ~VLDiG~G~G~lt~~L~~~------------~~~~v~avEid~~~~~~~~~~-~-~-------~~v~~i~~D~~~~~~~ 91 (249)
T 3ftd_A 34 TVVEVGGGTGNLTKVLLQH------------PLKKLYVIELDREMVENLKSI-G-D-------ERLEVINEDASKFPFC 91 (249)
T ss_dssp EEEEEESCHHHHHHHHTTS------------CCSEEEEECCCHHHHHHHTTS-C-C-------TTEEEECSCTTTCCGG
T ss_pred EEEEEcCchHHHHHHHHHc------------CCCeEEEEECCHHHHHHHHhc-c-C-------CCeEEEEcchhhCChh
Confidence 6899999999999998875 147899999999999999877 2 1 2899999999888754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.81 E-value=4.7e-09 Score=70.40 Aligned_cols=71 Identities=7% Similarity=-0.131 Sum_probs=53.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++. + .... ..+++++|+++.++..++++..... +++++.+|+.+.+++.
T Consensus 24 ~VLEIG~G~G~lt~-l-~~~~-----------~~~v~avEid~~~~~~a~~~~~~~~-------~v~~i~~D~~~~~~~~ 83 (252)
T 1qyr_A 24 AMVEIGPGLAALTE-P-VGER-----------LDQLTVIELDRDLAARLQTHPFLGP-------KLTIYQQDAMTFNFGE 83 (252)
T ss_dssp CEEEECCTTTTTHH-H-HHTT-----------CSCEEEECCCHHHHHHHHTCTTTGG-------GEEEECSCGGGCCHHH
T ss_pred EEEEECCCCcHHHH-h-hhCC-----------CCeEEEEECCHHHHHHHHHHhccCC-------ceEEEECchhhCCHHH
Confidence 68999999999999 5 3311 2349999999999999998876533 8999999998876432
Q ss_pred -----CCeeEEEEccc
Q psy890 82 -----DSYSAYTIAFG 92 (131)
Q Consensus 82 -----~~~D~i~~~~~ 92 (131)
+..+.|+++..
T Consensus 84 ~~~~~~~~~~vvsNlP 99 (252)
T 1qyr_A 84 LAEKMGQPLRVFGNLP 99 (252)
T ss_dssp HHHHHTSCEEEEEECC
T ss_pred hhcccCCceEEEECCC
Confidence 23467776544
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-08 Score=68.78 Aligned_cols=77 Identities=10% Similarity=-0.009 Sum_probs=56.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--------CCCCCCCceeEEecc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--------KVPVPNPRLRFLEAN 73 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d 73 (131)
+|||++||+|..+..++.. +.+|+++|.++.+...++++++... ... +++++..|
T Consensus 91 ~VLDl~~G~G~dal~lA~~-------------g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~----~i~~~~~D 153 (258)
T 2oyr_A 91 DVVDATAGLGRDAFVLASV-------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE----RLQLIHAS 153 (258)
T ss_dssp CEEETTCTTCHHHHHHHHH-------------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHH----HEEEEESC
T ss_pred EEEEcCCcCCHHHHHHHHc-------------CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhc----CEEEEECC
Confidence 6999999999999999886 4579999999988776666554221 111 78999999
Q ss_pred cccC-CCCCCCeeEEEEcccccc
Q psy890 74 AEEL-PIESDSYSAYTIAFGIRN 95 (131)
Q Consensus 74 ~~~~-~~~~~~~D~i~~~~~l~~ 95 (131)
..+. +...++||+|++.-....
T Consensus 154 ~~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 154 SLTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHHhCcccCCEEEEcCCCCC
Confidence 7763 322246999999765544
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.7e-09 Score=88.06 Aligned_cols=107 Identities=16% Similarity=0.153 Sum_probs=58.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~ 79 (131)
|+|||+|.|+|..+..+++.+...+ ....+++..|+|+.+.+.++++++.. .+.....|.... ++
T Consensus 1242 ~~ilEigagtg~~t~~il~~l~~~~------~~~~~yt~td~s~~~~~~a~~~f~~~--------di~~~~~d~~~~~~~ 1307 (2512)
T 2vz8_A 1242 MKVVEVLAGDGQLYSRIPALLNTQP------VMDLDYTATDRNPQALEAAQAKLEQL--------HVTQGQWDPANPAPG 1307 (2512)
T ss_dssp EEEEEESCSSSCCTTTHHHHTTTSS------SCEEEEEEECSSSSSTTTTTTTHHHH--------TEEEECCCSSCCCC-
T ss_pred ceEEEECCCccHHHHHHHHhhcccC------cccceEEEecCChHHHHHHHHHhhhc--------ccccccccccccccC
Confidence 4799999999999888877764110 01458999999998888888776542 233322343321 23
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
...+||+|++.+++|..++....|.++++.|||||++++.+.
T Consensus 1308 ~~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1308 SLGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp ----CCEEEEECC--------------------CCEEEEEEC
T ss_pred CCCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEec
Confidence 456799999999999999999999999999999999988764
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.7e-09 Score=70.64 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=63.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.|+..+++..+ ...+.++|++.++.... ....... .++.....+++...++.
T Consensus 77 ~VLDLGaAPGGWSQvAa~~~~-----------~~~v~g~dVGvDl~~~p---i~~~~~g----~~ii~~~~~~dv~~l~~ 138 (277)
T 3evf_A 77 RVIDLGCGRGGWCYYAAAQKE-----------VSGVKGFTLGRDGHEKP---MNVQSLG----WNIITFKDKTDIHRLEP 138 (277)
T ss_dssp EEEEETCTTCHHHHHHHTSTT-----------EEEEEEECCCCTTCCCC---CCCCBTT----GGGEEEECSCCTTTSCC
T ss_pred EEEEecCCCCHHHHHHHHhcC-----------CCcceeEEEeccCcccc---cccCcCC----CCeEEEeccceehhcCC
Confidence 689999999999998776532 45688888875321000 0000000 03333444444445667
Q ss_pred CCeeEEEEccccc----cccCH--HHHHHHHHHhccCC-cEEEEEecc
Q psy890 82 DSYSAYTIAFGIR----NVTRI--DKALSEAYRVLKPG-GRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~----~~~~~--~~~l~~~~~~L~p~-G~l~~~~~~ 122 (131)
++||+|++..+.+ +.... ...+..+.++|+|| |.+++--+.
T Consensus 139 ~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 139 VKCDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp CCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred CCccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 8899999987655 11111 12367778999999 999875444
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.71 E-value=4.3e-08 Score=65.88 Aligned_cols=114 Identities=13% Similarity=0.095 Sum_probs=68.9
Q ss_pred ceeeeecccchhhHHHhhhhcCC---CCCCCCCCCCCeEEEEeCCH---HHHH-----------HHHHHhhhc-------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKL---PPNTLSEHCAPHVTVADINR---AMLD-----------VGEQRARDL------- 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~D~s~---~~~~-----------~~~~~~~~~------- 57 (131)
+|||+|+|+|..+..+++..... .+++. ....+++++|..+ +.+. .+++.....
T Consensus 63 ~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~--~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~ 140 (257)
T 2qy6_A 63 VVAESGFGTGLNFLTLWQAFDQFREAHPQAQ--LQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 140 (257)
T ss_dssp EEEESCCTTSHHHHHHHHHHHHHHHHCTTSS--CCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred EEEEECCChHHHHHHHHHHHHhhhhhCCCCC--cceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence 69999999999988877654100 00000 0036899999776 4444 344443321
Q ss_pred ---cCCCCCCCceeEEeccccc-CC-CCC---CCeeEEEEcc-ccccccC--HHHHHHHHHHhccCCcEEEE
Q psy890 58 ---FKVPVPNPRLRFLEANAEE-LP-IES---DSYSAYTIAF-GIRNVTR--IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 58 ---~~~~~~~~~~~~~~~d~~~-~~-~~~---~~~D~i~~~~-~l~~~~~--~~~~l~~~~~~L~p~G~l~~ 118 (131)
.+.+ ...+++++.+|+.+ ++ ... ..||+|+.-. .-..-++ ...++..+.+.|+|||++..
T Consensus 141 ~r~~~~~-~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 141 HRLLLDE-GRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEC---CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hheeccC-CceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 0110 00256788888766 33 222 2799999843 2222223 25789999999999999875
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.7e-08 Score=65.70 Aligned_cols=109 Identities=15% Similarity=0.143 Sum_probs=78.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHH--------------------------HHHHHHHHhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRA--------------------------MLDVGEQRAR 55 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~--------------------------~~~~~~~~~~ 55 (131)
.|||+|+..|..+..++..+.... .+..+++++|..+. .++.++++++
T Consensus 109 ~IlEiGv~~G~Sai~ma~~l~~~g------~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~ 182 (282)
T 2wk1_A 109 DLVETGVWRGGACILMRGILRAHD------VRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFR 182 (282)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT------CCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHH
T ss_pred cEEEeecCchHHHHHHHHHhHhcC------CCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHH
Confidence 589999999999888877653100 01568999996421 3567888888
Q ss_pred hccCCCCCCCceeEEecccccC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 56 DLFKVPVPNPRLRFLEANAEEL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 56 ~~~~~~~~~~~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..++.. .+++++.+++.+. + .+.++||+|+.-... .......+..+.+.|+|||++++-++
T Consensus 183 ~~gl~~---~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 183 NYDLLD---EQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp HTTCCS---TTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred HcCCCc---CceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 877631 2899999997663 3 445689999987542 22345678999999999999987554
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-07 Score=71.36 Aligned_cols=111 Identities=12% Similarity=-0.032 Sum_probs=71.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHH--HHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVG--EQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+|||.|||+|.+...+++.++.. ...+++|+|+++.++..| +.+......... -....+...|+....
T Consensus 324 rVLDPaCGSG~FLIaaA~~l~ei--------~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhG-i~~~~I~~dD~L~~~~ 394 (878)
T 3s1s_A 324 VISDPAAGSGNLLATVSAGFNNV--------MPRQIWANDIETLFLELLSIRLGLLFPQLVSS-NNAPTITGEDVCSLNP 394 (878)
T ss_dssp EEEETTCTTSHHHHHHHHTSTTC--------CGGGEEEECSCGGGHHHHHHHHHTTSTTTCBT-TBCCEEECCCGGGCCG
T ss_pred EEEECCCCccHHHHHHHHHhccc--------CCCeEEEEECCHHHHHHHHHHHHHHHhhhhcC-CCcceEEecchhcccc
Confidence 68999999999999888775311 135799999999999999 444432111100 002345555554432
Q ss_pred CCCCCeeEEEEcccccc-cc---------------------------C-HHHHHHHHHHhccCCcEEEEEec
Q psy890 79 IESDSYSAYTIAFGIRN-VT---------------------------R-IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~-~~---------------------------~-~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.....||+|+++-.... .. + ...++.++.+.|+|||++.++-.
T Consensus 395 ~~~~kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 395 EDFANVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp GGGTTEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred cccCCCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 23467999999654411 00 0 23468889999999999887643
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-08 Score=68.98 Aligned_cols=105 Identities=14% Similarity=0.144 Sum_probs=75.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc---cCCCCCCCceeEEecccccCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL---FKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~~ 78 (131)
+||-+|.|.|...+.++++ +..+++.+|+++.+++.+++.++.. ...+++.++++++..|....-
T Consensus 208 rVLIIGgGdG~~~revlkh------------~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl 275 (381)
T 3c6k_A 208 DVLILGGGDGGILCEIVKL------------KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVL 275 (381)
T ss_dssp EEEEEECTTCHHHHHHHTT------------CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHH
T ss_pred eEEEECCCcHHHHHHHHhc------------CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHH
Confidence 5899999999999998876 2468999999999999999876532 222223346889999865431
Q ss_pred ----CCCCCeeEEEEcccccc---cc-------CHHHHHHHHHHhccCCcEEEE
Q psy890 79 ----IESDSYSAYTIAFGIRN---VT-------RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~---~~-------~~~~~l~~~~~~L~p~G~l~~ 118 (131)
-..++||+|+.-..-.. .+ -...+++.+++.|+|||+++.
T Consensus 276 ~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 276 KRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp HHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred HhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 23467999998532111 11 125678999999999999864
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=4.4e-07 Score=63.67 Aligned_cols=112 Identities=13% Similarity=0.178 Sum_probs=80.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC-CCceeEEecccccCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP-NPRLRFLEANAEELP-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~-~ 79 (131)
+|||+++|+|.-+..++.... ...+++.|+++.-+...++++...+....+ ..++.+...|...++ .
T Consensus 151 ~VLD~CAaPGGKT~~la~~~~-----------~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~ 219 (359)
T 4fzv_A 151 IVLDLCAAPGGKTLALLQTGC-----------CRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGEL 219 (359)
T ss_dssp EEEESSCTTCHHHHHHHHTTC-----------EEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHH
T ss_pred EEEEecCCccHHHHHHHHhcC-----------CCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchh
Confidence 699999999999988887643 467999999999999998888765432110 126788888877654 3
Q ss_pred CCCCeeEEEEcccccc--------ccC----------------HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ESDSYSAYTIAFGIRN--------VTR----------------IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~--------~~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
..+.||.|++-..+.. -++ -.++|.+..++|||||+++-..++-.
T Consensus 220 ~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~ 288 (359)
T 4fzv_A 220 EGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLS 288 (359)
T ss_dssp STTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred ccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCc
Confidence 4578999997433221 010 13678888899999999987766643
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.42 E-value=3.6e-08 Score=66.51 Aligned_cols=103 Identities=12% Similarity=-0.000 Sum_probs=62.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.|+..+++..+ ...+.++|++..+...+... ...+ .++.....+.....++
T Consensus 92 ~~VLDLGaAPGGWsQvAa~~~g-----------v~sV~GvdvG~d~~~~pi~~-~~~g------~~ii~~~~~~dv~~l~ 153 (282)
T 3gcz_A 92 GIVVDLGCGRGGWSYYAASLKN-----------VKKVMAFTLGVQGHEKPIMR-TTLG------WNLIRFKDKTDVFNME 153 (282)
T ss_dssp EEEEEETCTTCHHHHHHHTSTT-----------EEEEEEECCCCTTSCCCCCC-CBTT------GGGEEEECSCCGGGSC
T ss_pred CEEEEeCCCCCHHHHHHHHhcC-----------CCeeeeEEeccCcccccccc-ccCC------CceEEeeCCcchhhcC
Confidence 3689999999999998876543 45788999876432111100 0001 1233222222222345
Q ss_pred CCCeeEEEEccccccccC-----H--HHHHHHHHHhccCC--cEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTR-----I--DKALSEAYRVLKPG--GRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~-----~--~~~l~~~~~~L~p~--G~l~~~~~~ 122 (131)
..++|+|++..+.. ... . ...|.-+.++|+|| |.|++--+.
T Consensus 154 ~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~ 203 (282)
T 3gcz_A 154 VIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLC 203 (282)
T ss_dssp CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred CCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEec
Confidence 67899999977665 221 1 12366667899999 999875544
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.41 E-value=2e-07 Score=64.52 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=57.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.++|..+|.|..+..+++.++ +..+|+++|.+++++..++ ++. . .+++++..++.++. +
T Consensus 60 iyVD~TlG~GGHS~~iL~~lg----------~~GrVig~D~Dp~Al~~A~-rL~----~----~Rv~lv~~nF~~l~~~L 120 (347)
T 3tka_A 60 IYIDGTFGRGGHSRLILSQLG----------EEGRLLAIDRDPQAIAVAK-TID----D----PRFSIIHGPFSALGEYV 120 (347)
T ss_dssp EEEESCCTTSHHHHHHHTTCC----------TTCEEEEEESCHHHHHHHT-TCC----C----TTEEEEESCGGGHHHHH
T ss_pred EEEEeCcCCCHHHHHHHHhCC----------CCCEEEEEECCHHHHHHHH-hhc----C----CcEEEEeCCHHHHHHHH
Confidence 579999999999999998875 4679999999999999884 441 1 28999999987763 1
Q ss_pred ---C-CCCeeEEEEccccc
Q psy890 80 ---E-SDSYSAYTIAFGIR 94 (131)
Q Consensus 80 ---~-~~~~D~i~~~~~l~ 94 (131)
. .+++|.|+...++.
T Consensus 121 ~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 121 AERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp HHTTCTTCEEEEEEECSCC
T ss_pred HhcCCCCcccEEEECCccC
Confidence 1 13689998766654
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=60.70 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=61.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|++||+||.+|.|+..+++. +.+|+++|..+ +-. .+... ++++++..|......+
T Consensus 213 ~~vlDLGAaPGGWT~~l~~r-------------g~~V~aVD~~~-l~~----~l~~~-------~~V~~~~~d~~~~~~~ 267 (375)
T 4auk_A 213 MWAVDLGACPGGWTYQLVKR-------------NMWVYSVDNGP-MAQ----SLMDT-------GQVTWLREDGFKFRPT 267 (375)
T ss_dssp CEEEEETCTTCHHHHHHHHT-------------TCEEEEECSSC-CCH----HHHTT-------TCEEEECSCTTTCCCC
T ss_pred CEEEEeCcCCCHHHHHHHHC-------------CCEEEEEEhhh-cCh----hhccC-------CCeEEEeCccccccCC
Confidence 57999999999999998875 67999999764 211 11111 2899999998887666
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCC---cEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG---GRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~---G~l~~~~ 120 (131)
..++|+|+|-... ++...+..+.+.+..+ +.++.+.
T Consensus 268 ~~~~D~vvsDm~~----~p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 268 RSNISWMVCDMVE----KPAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp SSCEEEEEECCSS----CHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred CCCcCEEEEcCCC----ChHHhHHHHHHHHhccccceEEEEEE
Confidence 6789999996643 3334444444444433 4544444
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=58.60 Aligned_cols=71 Identities=11% Similarity=0.026 Sum_probs=57.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+||.+||.|..+..+++. +.+|+++|.++.++..+++ +.. . +++++..++.++.
T Consensus 25 ~~VD~T~G~GGHS~~il~~-------------~g~VigiD~Dp~Ai~~A~~-L~~-~-------rv~lv~~~f~~l~~~L 82 (285)
T 1wg8_A 25 VYVDATLGGAGHARGILER-------------GGRVIGLDQDPEAVARAKG-LHL-P-------GLTVVQGNFRHLKRHL 82 (285)
T ss_dssp EEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHH-TCC-T-------TEEEEESCGGGHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHC-------------CCEEEEEeCCHHHHHHHHh-hcc-C-------CEEEEECCcchHHHHH
Confidence 5799999999999999986 3589999999999999988 644 2 8999999988764
Q ss_pred --CCCCCeeEEEEccccc
Q psy890 79 --IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~ 94 (131)
...+++|.|++..++.
T Consensus 83 ~~~g~~~vDgIL~DLGvS 100 (285)
T 1wg8_A 83 AALGVERVDGILADLGVS 100 (285)
T ss_dssp HHTTCSCEEEEEEECSCC
T ss_pred HHcCCCCcCEEEeCCccc
Confidence 2235799999865544
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=7.5e-07 Score=60.54 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=61.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++||+||++|.|+..+++..+ ...+.++|+...+...... ....+ .++.....+..-..+.
T Consensus 83 ~~vlDLGaaPGgWsqva~~~~g-----------v~sV~Gvdlg~~~~~~P~~-~~~~~------~~iv~~~~~~di~~l~ 144 (300)
T 3eld_A 83 GRVLDLGCGRGGWSYYAAAQKE-----------VMSVKGYTLGIEGHEKPIH-MQTLG------WNIVKFKDKSNVFTMP 144 (300)
T ss_dssp EEEEEETCTTCHHHHHHHTSTT-----------EEEEEEECCCCTTSCCCCC-CCBTT------GGGEEEECSCCTTTSC
T ss_pred CEEEEcCCCCCHHHHHHHHhcC-----------CceeeeEEecccccccccc-ccccC------CceEEeecCceeeecC
Confidence 3689999999999999987643 4578899986532100000 00000 0222222222222345
Q ss_pred CCCeeEEEEccccccccCH-------HHHHHHHHHhccCC-cEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRI-------DKALSEAYRVLKPG-GRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~-------~~~l~~~~~~L~p~-G~l~~~~~~ 122 (131)
...+|+|++..+.. .... ...|.-+.++|+|| |.|++--+.
T Consensus 145 ~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 145 TEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp CCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred CCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 67899999976655 2211 23366667899999 999875544
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.8e-05 Score=57.22 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=74.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCC--CCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE--HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+|+|.+||||.+...+.+++.+........ .....++|+|+++.++..++.++-..+.. ...+...|....+
T Consensus 220 ~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~-----~~~I~~~dtL~~~~ 294 (530)
T 3ufb_A 220 SVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLE-----YPRIDPENSLRFPL 294 (530)
T ss_dssp CEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCS-----CCEEECSCTTCSCG
T ss_pred EEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCc-----cccccccccccCch
Confidence 699999999999888877765322110000 01246999999999999999887766644 3455666654433
Q ss_pred ---CCCCCeeEEEEccccccc--c-------------C-HHHHHHHHHHhcc-------CCcEEEEEe
Q psy890 79 ---IESDSYSAYTIAFGIRNV--T-------------R-IDKALSEAYRVLK-------PGGRFLCLE 120 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~--~-------------~-~~~~l~~~~~~L~-------p~G~l~~~~ 120 (131)
.....||+|+++-.+... . + -..++..+.+.|| |||++.++-
T Consensus 295 ~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVl 362 (530)
T 3ufb_A 295 REMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVV 362 (530)
T ss_dssp GGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEE
T ss_pred hhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEe
Confidence 123479999996554211 0 1 1356788888886 699987753
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-06 Score=51.81 Aligned_cols=85 Identities=8% Similarity=-0.013 Sum_probs=56.6
Q ss_pred ceeeeecccc-hhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+|||+|||+| +.+..|++.. +..|+++|+++..+. ++..|+.+....
T Consensus 38 rVlEVG~G~g~~vA~~La~~~------------g~~V~atDInp~Av~--------------------~v~dDiF~P~~~ 85 (153)
T 2k4m_A 38 RVVEVGAGRFLYVSDYIRKHS------------KVDLVLTDIKPSHGG--------------------IVRDDITSPRME 85 (153)
T ss_dssp EEEEETCTTCCHHHHHHHHHS------------CCEEEEECSSCSSTT--------------------EECCCSSSCCHH
T ss_pred cEEEEccCCChHHHHHHHHhC------------CCeEEEEECCccccc--------------------eEEccCCCCccc
Confidence 6999999999 5888887642 678999999873332 566777663221
Q ss_pred C-CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 S-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
. +.||+|.+... .+++...+.++.+.. |.-+++..++.
T Consensus 86 ~Y~~~DLIYsirP---P~El~~~i~~lA~~v--~adliI~pL~~ 124 (153)
T 2k4m_A 86 IYRGAALIYSIRP---PAEIHSSLMRVADAV--GARLIIKPLTG 124 (153)
T ss_dssp HHTTEEEEEEESC---CTTTHHHHHHHHHHH--TCEEEEECBTT
T ss_pred ccCCcCEEEEcCC---CHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 1 47999987543 446666666666543 44566655544
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=1.5e-05 Score=53.23 Aligned_cols=99 Identities=9% Similarity=-0.055 Sum_probs=57.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCc---eeEEec-cccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPR---LRFLEA-NAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-d~~~ 76 (131)
++|||+||++|.|+..+++..+ ...+.+.++..+. . ..+....+ .. +++... |+.+
T Consensus 75 ~~VVDLGaAPGGWSQvAa~~~~-----------vg~V~G~vig~D~-~----~~P~~~~~----~Gv~~i~~~~G~Df~~ 134 (269)
T 2px2_A 75 GKVVDLGCGRGGWSYYAATMKN-----------VQEVRGYTKGGPG-H----EEPMLMQS----YGWNIVTMKSGVDVFY 134 (269)
T ss_dssp EEEEEETCTTSHHHHHHTTSTT-----------EEEEEEECCCSTT-S----CCCCCCCS----TTGGGEEEECSCCGGG
T ss_pred CEEEEcCCCCCHHHHHHhhhcC-----------CCCceeEEEcccc-c----cCCCcccC----CCceEEEeeccCCccC
Confidence 4799999999999998888622 1233444443211 0 00110000 02 355546 8876
Q ss_pred CCCCCCCeeEEEEccccccccC----H---HHHHHHHHHhccCCc-EEEEEecc
Q psy890 77 LPIESDSYSAYTIAFGIRNVTR----I---DKALSEAYRVLKPGG-RFLCLEFS 122 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~----~---~~~l~~~~~~L~p~G-~l~~~~~~ 122 (131)
. ...++|+|+|-.+-. ..+ - ..+|.-+.++|+||| -|++--+.
T Consensus 135 ~--~~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 135 K--PSEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp S--CCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred C--CCCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 3 345799999966543 221 1 125666778999999 77775544
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.86 E-value=3.8e-05 Score=53.80 Aligned_cols=57 Identities=11% Similarity=0.028 Sum_probs=47.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 77 (131)
.|||||+|.|.+|..|++... ..+++++|+++.++...++.. ... +++++..|+.++
T Consensus 61 ~VlEIGPG~G~LT~~Ll~~~~-----------~~~vvavE~D~~l~~~L~~~~-~~~-------~l~ii~~D~l~~ 117 (353)
T 1i4w_A 61 KVLDLYPGVGIQSAIFYNKYC-----------PRQYSLLEKRSSLYKFLNAKF-EGS-------PLQILKRDPYDW 117 (353)
T ss_dssp EEEEESCTTCHHHHHHHHHHC-----------CSEEEEECCCHHHHHHHHHHT-TTS-------SCEEECSCTTCH
T ss_pred EEEEECCCCCHHHHHHHhhCC-----------CCEEEEEecCHHHHHHHHHhc-cCC-------CEEEEECCccch
Confidence 599999999999999998643 468999999999999888776 222 899999998654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.85 E-value=4.3e-05 Score=52.20 Aligned_cols=43 Identities=7% Similarity=0.022 Sum_probs=38.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||++||+|..+..+++. +.+++++|+++.+++.+++++...
T Consensus 238 ~vlD~f~GsGt~~~~a~~~-------------g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 238 VVLDPFAGTGTTLIAAARW-------------GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp EEEETTCTTTHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHc-------------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 6899999999998887664 578999999999999999998764
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00015 Score=49.46 Aligned_cols=100 Identities=10% Similarity=-0.009 Sum_probs=62.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-ccccCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~ 80 (131)
.+||+||++|.|+..++...+ ..+|+++|+...--+.- ......++. -+.+... |+..++
T Consensus 97 ~VlDLGaapGGwsq~~~~~~g-----------v~~V~avdvG~~~he~P-~~~~ql~w~-----lV~~~~~~Dv~~l~-- 157 (321)
T 3lkz_A 97 KVIDLGCGRGGWCYYMATQKR-----------VQEVRGYTKGGPGHEEP-QLVQSYGWN-----IVTMKSGVDVFYRP-- 157 (321)
T ss_dssp EEEEETCTTCHHHHHHTTCTT-----------EEEEEEECCCSTTSCCC-CCCCBTTGG-----GEEEECSCCTTSSC--
T ss_pred EEEEeCCCCCcHHHHHHhhcC-----------CCEEEEEEcCCCCccCc-chhhhcCCc-----ceEEEeccCHhhCC--
Confidence 689999999999997777643 55899999866311000 000122221 3667665 665543
Q ss_pred CCCeeEEEEccccccccCH-------HHHHHHHHHhccCC-cEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRI-------DKALSEAYRVLKPG-GRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~-------~~~l~~~~~~L~p~-G~l~~~~~ 121 (131)
..++|+|+|-.+ ...+++ .+.|.-+.++|++| |-+.+--+
T Consensus 158 ~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl 205 (321)
T 3lkz_A 158 SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVL 205 (321)
T ss_dssp CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEES
T ss_pred CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEc
Confidence 366999999776 333332 23566667889988 77765333
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.5e-05 Score=50.97 Aligned_cols=99 Identities=9% Similarity=-0.024 Sum_probs=64.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-ccccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~ 79 (131)
++|||+||++|.|+..++...+ ..+|+++|+...--+.- ......++. .++|... |+..++
T Consensus 80 ~~VvDLGaapGGWSq~~a~~~g-----------~~~V~avdvG~~ghe~P-~~~~s~gwn-----~v~fk~gvDv~~~~- 141 (267)
T 3p8z_A 80 GRVIDLGCGRGGWSYYCAGLKK-----------VTEVRGYTKGGPGHEEP-VPMSTYGWN-----IVKLMSGKDVFYLP- 141 (267)
T ss_dssp EEEEEESCTTSHHHHHHHTSTT-----------EEEEEEECCCSTTSCCC-CCCCCTTTT-----SEEEECSCCGGGCC-
T ss_pred CEEEEcCCCCCcHHHHHHHhcC-----------CCEEEEEecCCCCccCc-chhhhcCcC-----ceEEEeccceeecC-
Confidence 4689999999999997777654 56899999866322100 011233443 6889888 865543
Q ss_pred CCCCeeEEEEcccccccc---CH---HHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVT---RI---DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~---~~---~~~l~~~~~~L~p~G~l~~~ 119 (131)
..++|.|+|-.+-..-. +. .+.|.-+.++|++ |-+.+-
T Consensus 142 -~~~~DtllcDIgeSs~~~~vE~~RtlrvLela~~wL~~-~~fc~K 185 (267)
T 3p8z_A 142 -PEKCDTLLCDIGESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIK 185 (267)
T ss_dssp -CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEE
T ss_pred -CccccEEEEecCCCCCChhhhhhHHHHHHHHHHHhccc-CCEEEE
Confidence 36699999976652221 11 2356666788988 666553
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00022 Score=48.35 Aligned_cols=98 Identities=6% Similarity=-0.077 Sum_probs=71.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
.+||+-+|||.+++.++.. ..+++.+|.++..+...++++.... +++++..|.... .
T Consensus 94 ~~LDlfaGSGaLgiEaLS~-------------~d~~vfvE~~~~a~~~L~~Nl~~~~-------~~~V~~~D~~~~L~~l 153 (283)
T 2oo3_A 94 STLSYYPGSPYFAINQLRS-------------QDRLYLCELHPTEYNFLLKLPHFNK-------KVYVNHTDGVSKLNAL 153 (283)
T ss_dssp SSCCEEECHHHHHHHHSCT-------------TSEEEEECCSHHHHHHHTTSCCTTS-------CEEEECSCHHHHHHHH
T ss_pred CceeEeCCcHHHHHHHcCC-------------CCeEEEEeCCHHHHHHHHHHhCcCC-------cEEEEeCcHHHHHHHh
Confidence 4689999999999988773 5789999999999999999887522 899999995442 1
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~~ 119 (131)
-+..+||+|++--....-.+..+.+..+.+ .+.|+|++++.
T Consensus 154 ~~~~~~fdLVfiDPPYe~k~~~~~vl~~L~~~~~r~~~Gi~v~W 197 (283)
T 2oo3_A 154 LPPPEKRGLIFIDPSYERKEEYKEIPYAIKNAYSKFSTGLYCVW 197 (283)
T ss_dssp CSCTTSCEEEEECCCCCSTTHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cCCCCCccEEEECCCCCCCcHHHHHHHHHHHhCccCCCeEEEEE
Confidence 233569999985544333345555555554 34688888764
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00033 Score=46.87 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=37.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||..||+|..+..+.+. +.+++++|+++.+++.++++++..
T Consensus 215 ~vlD~f~GsGtt~~~a~~~-------------gr~~ig~e~~~~~~~~~~~r~~~~ 257 (260)
T 1g60_A 215 LVLDCFMGSGTTAIVAKKL-------------GRNFIGCDMNAEYVNQANFVLNQL 257 (260)
T ss_dssp EEEESSCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHc-------------CCeEEEEeCCHHHHHHHHHHHHhc
Confidence 5899999999998877664 679999999999999999998754
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=45.08 Aligned_cols=95 Identities=13% Similarity=0.072 Sum_probs=59.5
Q ss_pred Cceeeeec------ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc
Q psy890 1 MYILFYLV------FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 1 ~~iLdig~------G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
|+|||+|+ .+|.+ +++.+. + .+..++++|+.+ +.. + .-.++.+|.
T Consensus 111 mrVLDLGA~s~kg~APGS~---VLr~~~--p-------~g~~VVavDL~~---------~~s----d----a~~~IqGD~ 161 (344)
T 3r24_A 111 MRVIHFGAGSDKGVAPGTA---VLRQWL--P-------TGTLLVDSDLND---------FVS----D----ADSTLIGDC 161 (344)
T ss_dssp CEEEEESCCCTTSBCHHHH---HHHHHS--C-------TTCEEEEEESSC---------CBC----S----SSEEEESCG
T ss_pred CEEEeCCCCCCCCCCCcHH---HHHHhC--C-------CCcEEEEeeCcc---------ccc----C----CCeEEEccc
Confidence 68999996 56663 444443 0 235899999966 111 1 124488886
Q ss_pred ccCCCCCCCeeEEEEcccccc-----ccC------HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 75 EELPIESDSYSAYTIAFGIRN-----VTR------IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 75 ~~~~~~~~~~D~i~~~~~l~~-----~~~------~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.... ...+||+|++-..-.. ... -+.++.-+.+.|+|||-|++--+....
T Consensus 162 ~~~~-~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 162 ATVH-TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp GGEE-ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred cccc-cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 5432 2478999998543211 111 256677778899999999886555443
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0052 Score=43.41 Aligned_cols=75 Identities=7% Similarity=0.016 Sum_probs=55.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+++|+-||.|.++.-+... +...+.++|+++.+++..+.++. ...++..|+.+..
T Consensus 3 ~~vidLFsG~GGlslG~~~a------------G~~~v~avE~d~~a~~t~~~N~~----------~~~~~~~DI~~~~~~ 60 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA------------GFDVKMAVEIDQHAINTHAINFP----------RSLHVQEDVSLLNAE 60 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH------------TCEEEEEECSCHHHHHHHHHHCT----------TSEEECCCGGGCCHH
T ss_pred CeEEEEccCcCHHHHHHHHC------------CCcEEEEEeCCHHHHHHHHHhCC----------CCceEecChhhcCHH
Confidence 57999999999999887665 23457899999999888877753 4566777877653
Q ss_pred -C-----CCCCeeEEEEcccccccc
Q psy890 79 -I-----ESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~~~~ 97 (131)
+ ....+|+|+....+..++
T Consensus 61 ~~~~~~~~~~~~D~i~ggpPCQ~fS 85 (376)
T 3g7u_A 61 IIKGFFKNDMPIDGIIGGPPCQGFS 85 (376)
T ss_dssp HHHHHHCSCCCCCEEEECCCCCTTC
T ss_pred HHHhhcccCCCeeEEEecCCCCCcc
Confidence 1 345799999876665543
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0019 Score=44.35 Aligned_cols=109 Identities=13% Similarity=-0.038 Sum_probs=59.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH------------HHHHHHHHHhhhccCCCCCCCceeE
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR------------AMLDVGEQRARDLFKVPVPNPRLRF 69 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (131)
+|||+|-|+|.+.....+......+. ...+++.+|..+ +..+.....+....... -...+
T Consensus 99 ~IlE~GFGTGLNfl~t~~~~~~~~~~-----~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~---v~L~l 170 (308)
T 3vyw_A 99 RILDVGFGLGYNLAVALKHLWEVNPK-----LRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGER---LSLKV 170 (308)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHCTT-----CEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSS---EEEEE
T ss_pred EEEEeCCCccHHHHHHHHHHHHhCCC-----cceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCc---EEEEE
Confidence 69999999998865554432111100 134566666421 11222222222111110 02456
Q ss_pred EecccccC-C-CCCCCeeEEEEcccc-ccccCH--HHHHHHHHHhccCCcEEEE
Q psy890 70 LEANAEEL-P-IESDSYSAYTIAFGI-RNVTRI--DKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 70 ~~~d~~~~-~-~~~~~~D~i~~~~~l-~~~~~~--~~~l~~~~~~L~p~G~l~~ 118 (131)
..+|+.+. + +....+|+|+.-..- ..-|++ ..++.++.+.++|||.+.-
T Consensus 171 ~~GDa~~~l~~l~~~~~Da~flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT 224 (308)
T 3vyw_A 171 LLGDARKRIKEVENFKADAVFHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS 224 (308)
T ss_dssp EESCHHHHGGGCCSCCEEEEEECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE
T ss_pred EechHHHHHhhhcccceeEEEeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE
Confidence 67776542 2 344579999885421 222222 5789999999999999864
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.014 Score=40.58 Aligned_cols=110 Identities=5% Similarity=-0.030 Sum_probs=72.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccC-----C----CC-------CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFK-----V----PV-------PNP 65 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~-----~----~~-------~~~ 65 (131)
.|+.+|||.......+....+ ...++=+|. ++.++.-++.+...+. . .. .+.
T Consensus 100 qVV~LGaGlDTr~~RL~~~~~-----------~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~ 167 (334)
T 1rjd_A 100 QVVNLGCGSDLRMLPLLQMFP-----------HLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQG 167 (334)
T ss_dssp EEEEETCTTCCTHHHHHHHCT-----------TEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECS
T ss_pred EEEEeCCCCccHHHHhcCcCC-----------CCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCC
Confidence 479999999988887766422 467777776 6666666665554310 0 00 012
Q ss_pred ceeEEecccccCC--------C-CCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 66 RLRFLEANAEELP--------I-ESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 66 ~~~~~~~d~~~~~--------~-~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+..++..|+.+.. . ..+...++++-.++.+++ ....++..+.+.. |+|.+++.|...+
T Consensus 168 ~~~~v~~DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 168 RYKLAACDLNDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp SEEEEECCTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred ceEEEecCCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 7889999987632 1 224568888888888886 4556677777665 7888877776554
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0053 Score=42.75 Aligned_cols=76 Identities=13% Similarity=0.090 Sum_probs=52.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++++|+.||.|.++..+...-. ....+.++|+++.+++..+.++. ...++..|+.++.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~----------~~~~v~~~E~d~~a~~~~~~N~~----------~~~~~~~Di~~~~~~ 62 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCI----------PAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITLE 62 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTC----------SEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCHH
T ss_pred CeEEEeCcCccHHHHHHHHCCC----------CceEEEEEeCCHHHHHHHHHhcc----------ccccccCCHHHccHh
Confidence 4689999999999888876510 02469999999999999888874 3345677777653
Q ss_pred -CCCCCeeEEEEccccccc
Q psy890 79 -IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~ 96 (131)
++...+|+++....+..+
T Consensus 63 ~~~~~~~D~l~~gpPCq~f 81 (343)
T 1g55_A 63 EFDRLSFDMILMSPPCQPF 81 (343)
T ss_dssp HHHHHCCSEEEECCC----
T ss_pred HcCcCCcCEEEEcCCCcch
Confidence 111258999987665444
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0072 Score=42.85 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=37.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 56 (131)
.|+|+|+|+|.+...+++.+...+ . .....+++.+|+|+...+.-++++..
T Consensus 83 ~ivElGaG~GtLa~diL~~l~~~p-~---~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 83 RLIEIGPGRGTMMADALRALRVLP-I---LYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSH-H---HHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred EEEEECCCcchHHHHHHHHHHhCC-c---cccccEEEEEecCHHHHHHHHHHhcC
Confidence 589999999999999988764111 0 00245899999999888877766644
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.027 Score=37.71 Aligned_cols=112 Identities=15% Similarity=0.056 Sum_probs=68.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEe-----CCH----------------------HHHHHHH---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVAD-----INR----------------------AMLDVGE--- 51 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D-----~s~----------------------~~~~~~~--- 51 (131)
.|+|+|+-.|..+..++.......+.+ ...+++++| +.. +.+....
T Consensus 72 ~ivE~GV~rG~S~~~~a~~~~~l~~~~----~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~ 147 (257)
T 3tos_A 72 VIMEFGVRFGRHLGTFAALRGVYEPYN----PLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAH 147 (257)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHCTTC----TTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHH
T ss_pred eEEEEecccCHHHHHHHHHHHHhcccC----CCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHH
Confidence 479999999988777654321000000 256899998 321 1111111
Q ss_pred HHhhhccCCCCCCCceeEEecccccC-C-----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 52 QRARDLFKVPVPNPRLRFLEANAEEL-P-----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~d~~~~-~-----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++.+..+..+ .++.++.+++.+. + .+..++|+++.-... .......+..+...|+|||++++-++.
T Consensus 148 ~~~~~~g~~~---~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 148 ECSDFFGHVT---QRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp HTTSTTTTSC---CSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhhhcCCCC---CcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 1112222211 3899999997764 2 234579999887642 234456788899999999999987764
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.027 Score=38.65 Aligned_cols=73 Identities=7% Similarity=0.096 Sum_probs=51.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 79 (131)
|++||+-||.|-++.-+-+. +...+.++|+++.+.+.-+.+.. ..++..|+.++..
T Consensus 1 mkvidLFsG~GG~~~G~~~a------------G~~~v~a~e~d~~a~~ty~~N~~-----------~~~~~~DI~~i~~~ 57 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA------------GFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSD 57 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT------------TCEEEEEEECCTTTHHHHHHHCC-----------SEEEESCGGGCCGG
T ss_pred CeEEEeCcCccHHHHHHHHC------------CCEEEEEEeCCHHHHHHHHHHCC-----------CCcccCChhhCCHh
Confidence 78999999999888776543 24457899999988887776653 2456678777642
Q ss_pred CCCCeeEEEEccccccc
Q psy890 80 ESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~ 96 (131)
.-..+|+++....+..+
T Consensus 58 ~~~~~D~l~ggpPCQ~f 74 (331)
T 3ubt_Y 58 EFPKCDGIIGGPPSQSW 74 (331)
T ss_dssp GSCCCSEEECCCCGGGT
T ss_pred hCCcccEEEecCCCCCc
Confidence 12358999886655544
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.012 Score=42.01 Aligned_cols=45 Identities=11% Similarity=-0.046 Sum_probs=37.9
Q ss_pred ceeeeecccchhhHHHh-hhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh
Q psy890 2 YILFYLVFPGDIAFRFL-NYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 56 (131)
+++|+|++.|..+..++ +..+ ...+++++|+++..+...+++++.
T Consensus 229 ~viDvGAn~G~~s~~~a~~~~~----------~~~~V~afEP~p~~~~~L~~n~~~ 274 (409)
T 2py6_A 229 KMVDCGASIGESLAGLIGVTKG----------KFERVWMIEPDRINLQTLQNVLRR 274 (409)
T ss_dssp EEEEETCTTSHHHHHHHHHHTS----------CCSEEEEECCCHHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC----------CCCEEEEEcCCHHHHHHHHHHHHh
Confidence 68999999999999887 3432 237999999999999999998876
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.34 E-value=0.048 Score=37.71 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=50.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 79 (131)
++++|+.||.|.++..+... +...+.++|+++.+++..+.++.... ..|+.++..
T Consensus 12 ~~~~dLFaG~Gg~~~g~~~a------------G~~~v~~~e~d~~a~~t~~~N~~~~~------------~~Di~~~~~~ 67 (327)
T 2c7p_A 12 LRFIDLFAGLGGFRLALESC------------GAECVYSNEWDKYAQEVYEMNFGEKP------------EGDITQVNEK 67 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHT------------TCEEEEEECCCHHHHHHHHHHHSCCC------------BSCGGGSCGG
T ss_pred CcEEEECCCcCHHHHHHHHC------------CCeEEEEEeCCHHHHHHHHHHcCCCC------------cCCHHHcCHh
Confidence 46899999999998877654 24568899999999998888874311 456555431
Q ss_pred CCCCeeEEEEccccccc
Q psy890 80 ESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~ 96 (131)
.-..+|+|+....+..+
T Consensus 68 ~~~~~D~l~~gpPCQ~f 84 (327)
T 2c7p_A 68 TIPDHDILCAGFPCQAF 84 (327)
T ss_dssp GSCCCSEEEEECCCTTT
T ss_pred hCCCCCEEEECCCCCCc
Confidence 11358999986555443
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=95.88 E-value=0.18 Score=34.57 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=66.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
|+++|||-=.-...+.. + ...+++-+| .+..+...++.+...+..+ +.+..++..|+.+ .
T Consensus 106 vV~LGaGlDTra~Rl~~--~----------~~~~v~evD-~P~vi~~k~~lL~~~~~~~--~~~~~~v~~Dl~d-~~~~~ 169 (310)
T 2uyo_A 106 FVILASGLDSRAYRLDW--P----------TGTTVYEID-QPKVLAYKSTTLAEHGVTP--TADRREVPIDLRQ-DWPPA 169 (310)
T ss_dssp EEEETCTTCCHHHHSCC--C----------TTCEEEEEE-CHHHHHHHHHHHHHTTCCC--SSEEEEEECCTTS-CHHHH
T ss_pred EEEeCCCCCchhhhccC--C----------CCcEEEEcC-CHHHHHHHHHHHHhcCCCC--CCCeEEEecchHh-hHHHH
Confidence 78899986443332221 1 247899999 5888888888876432111 1378889999876 3
Q ss_pred -----CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -----IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+..+.-=++++-.++++++ +...++..+...+.||+.+++-.
T Consensus 170 l~~~g~d~~~Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~ 218 (310)
T 2uyo_A 170 LRSAGFDPSARTAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 218 (310)
T ss_dssp HHHTTCCTTSCEEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred HHhccCCCCCCEEEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 2223445667777788876 45677888888888888886643
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.012 Score=40.65 Aligned_cols=44 Identities=5% Similarity=-0.120 Sum_probs=37.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF 58 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~ 58 (131)
.|||.-||+|.......+. +.+++++|+++..+..+++++....
T Consensus 255 ~VlDpF~GsGtt~~aa~~~-------------gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 255 LVVDIFGGSNTTGLVAERE-------------SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp EEEETTCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred EEEECCCCCCHHHHHHHHc-------------CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 5899999999987766654 6799999999999999999987654
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.047 Score=38.10 Aligned_cols=92 Identities=13% Similarity=0.080 Sum_probs=57.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEe--ccccc-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLE--ANAEE-L 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~-~ 77 (131)
+||-+|+|+ |..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-. .+..+ .
T Consensus 193 ~VlV~GaG~vG~~a~qlak~~G-----------a~~Vi~~~~~~~~~~~a~~l----Ga~-----~v-i~~~~~~~~~~~ 251 (371)
T 1f8f_A 193 SFVTWGAGAVGLSALLAAKVCG-----------ASIIIAVDIVESRLELAKQL----GAT-----HV-INSKTQDPVAAI 251 (371)
T ss_dssp EEEEESCSHHHHHHHHHHHHHT-----------CSEEEEEESCHHHHHHHHHH----TCS-----EE-EETTTSCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCeEEEECCCHHHHHHHHHc----CCC-----EE-ecCCccCHHHHH
Confidence 577788765 777777777753 33799999999888777543 211 11 111 11110 1
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+.+|+|+-..+- ...+.+..+.|+++|+++++-
T Consensus 252 ~~~~~gg~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 289 (371)
T 1f8f_A 252 KEITDGGVNFALESTGS------PEILKQGVDALGILGKIAVVG 289 (371)
T ss_dssp HHHTTSCEEEEEECSCC------HHHHHHHHHTEEEEEEEEECC
T ss_pred HHhcCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEeC
Confidence 0112379999875431 345788899999999998754
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.036 Score=39.14 Aligned_cols=96 Identities=18% Similarity=0.107 Sum_probs=58.9
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++.++.+++. + - ..+...-.+.
T Consensus 188 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~a~~l----G-------a-~~i~~~~~~~~~~ 244 (398)
T 2dph_A 188 HVYIAGAGPVGRCAAAGARLLG-----------AACVIVGDQNPERLKLLSDA----G-------F-ETIDLRNSAPLRD 244 (398)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEEESCHHHHHHHHTT----T-------C-EEEETTSSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcCCHHHHHHHHHc----C-------C-cEEcCCCcchHHH
Confidence 577888865 777888887753 33899999999877776532 2 1 1121111111
Q ss_pred ---CC-CCCCeeEEEEccccccc--------cCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 ---PI-ESDSYSAYTIAFGIRNV--------TRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ---~~-~~~~~D~i~~~~~l~~~--------~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. ....+|+|+-.-+-... ......+.+..+.|+++|+++++-
T Consensus 245 ~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 245 QIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp HHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred HHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 01 12369999876543211 012346788899999999987653
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.03 Score=40.23 Aligned_cols=49 Identities=10% Similarity=0.092 Sum_probs=38.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 56 (131)
.|+|+|+|+|.+...+++.+..... ...+++.+|+|+...+.-++++..
T Consensus 140 ~ivE~GaG~GtLa~DiL~~l~~~~~------~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 140 RVMEFGAGTGKLAAGLLTALAALGV------ELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp EEEEESCTTSHHHHHHHHHHHHTTC------CCSEEEEECTTSSSHHHHHHHHHH
T ss_pred eEEEeCCCccHHHHHHHHHHHhcCC------CCceEEEEEcCHHHHHHHHHHHhc
Confidence 6899999999999999988753211 124899999999888877777654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.072 Score=36.96 Aligned_cols=76 Identities=16% Similarity=0.055 Sum_probs=51.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++++|+-||.|.++.-+.+.-- ....+.++|+++.+.+..+.++. ...++..|+.++.
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~----------~~~~v~a~e~d~~a~~ty~~N~~----------~~~~~~~DI~~~~~~ 63 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGL----------DGEIVAAVDINTVANSVYKHNFP----------ETNLLNRNIQQLTPQ 63 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTC----------SEEEEEEECCCHHHHHHHHHHCT----------TSCEECCCGGGCCHH
T ss_pred CEEEEECcCccHHHHHHHHcCC----------CceEEEEEeCCHHHHHHHHHhCC----------CCceeccccccCCHH
Confidence 3689999999999887765410 02458899999998888877764 2345566766653
Q ss_pred -CCCCCeeEEEEccccccc
Q psy890 79 -IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~ 96 (131)
++...+|+++....+..+
T Consensus 64 ~~~~~~~D~l~ggpPCQ~f 82 (333)
T 4h0n_A 64 VIKKWNVDTILMSPPCQPF 82 (333)
T ss_dssp HHHHTTCCEEEECCCCCCS
T ss_pred HhccCCCCEEEecCCCcch
Confidence 222368999876655444
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.049 Score=37.71 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=51.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeE-EEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHV-TVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
++++|+-||.|.++.-+.+.-- ....+ .++|+++.+.+..+.++... .+..|+.++.
T Consensus 11 ~~vidLFaG~GG~~~G~~~aG~----------~~~~v~~a~e~d~~a~~ty~~N~~~~-----------~~~~DI~~~~~ 69 (327)
T 3qv2_A 11 VNVIEFFSGIGGLRSSYERSSI----------NINATFIPFDINEIANKIYSKNFKEE-----------VQVKNLDSISI 69 (327)
T ss_dssp EEEEEETCTTTHHHHHHHHSSC----------CCCEEEEEECCCHHHHHHHHHHHCCC-----------CBCCCTTTCCH
T ss_pred CEEEEECCChhHHHHHHHHcCC----------CceEEEEEEECCHHHHHHHHHHCCCC-----------cccCChhhcCH
Confidence 3689999999999887765410 01346 79999999998888877431 3455666553
Q ss_pred --CCCCCeeEEEEccccccc
Q psy890 79 --IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~ 96 (131)
++...+|+++....+..+
T Consensus 70 ~~i~~~~~Dil~ggpPCQ~f 89 (327)
T 3qv2_A 70 KQIESLNCNTWFMSPPCQPY 89 (327)
T ss_dssp HHHHHTCCCEEEECCCCTTC
T ss_pred HHhccCCCCEEEecCCccCc
Confidence 222368999987666555
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=95.45 E-value=0.013 Score=39.78 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=37.9
Q ss_pred ceeEEecccccC-C-CCCCCeeEEEEccccccc--------------------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 66 RLRFLEANAEEL-P-IESDSYSAYTIAFGIRNV--------------------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 66 ~~~~~~~d~~~~-~-~~~~~~D~i~~~~~l~~~--------------------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+++++|..+. . +++++||+|+++-..... ..+...+.++.++|+|||.+++.
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~ 96 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV 96 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 568889997662 2 456789999995433211 11345678899999999998764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.02 Score=39.52 Aligned_cols=44 Identities=11% Similarity=-0.056 Sum_probs=35.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH---HHHHHHHHHhhhcc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR---AMLDVGEQRARDLF 58 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~---~~~~~~~~~~~~~~ 58 (131)
.|||.-||+|.......+. +.+++++|+++ ..++.+++++...+
T Consensus 245 ~vlDpF~GsGtt~~aa~~~-------------~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 245 TVLDFFAGSGVTARVAIQE-------------GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp EEEETTCTTCHHHHHHHHH-------------TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred EEEecCCCCCHHHHHHHHc-------------CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 5899999999988877665 67899999999 99999999987544
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.36 E-value=0.087 Score=39.76 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=65.8
Q ss_pred ceeeeecccchhhHHHhhhhcCC---CCCCCCCCCCCeEEEEeC---CHHHHHHHHHHhhh---------ccCCCCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKL---PPNTLSEHCAPHVTVADI---NRAMLDVGEQRARD---------LFKVPVP--- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~D~---s~~~~~~~~~~~~~---------~~~~~~~--- 63 (131)
+|+|+|-|+|.+.....+..... ++... ....+++.+|. +.+.+..+...++. ..++...
T Consensus 69 ~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~--~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 69 VVAESGFGTGLNFLTLWQAFDQFREAHPQAQ--LQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHCTTSS--CCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred EEEEeCCchHHHHHHHHHHHHHhhhhCcCCC--CceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 68999999999987776664210 00000 02467999998 88777755442211 0111100
Q ss_pred --------CCceeEEecccccC-C-CC---CCCeeEEEEccccc-cccC--HHHHHHHHHHhccCCcEEEE
Q psy890 64 --------NPRLRFLEANAEEL-P-IE---SDSYSAYTIAFGIR-NVTR--IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 64 --------~~~~~~~~~d~~~~-~-~~---~~~~D~i~~~~~l~-~~~~--~~~~l~~~~~~L~p~G~l~~ 118 (131)
.-.+++..+|+.+. + +. ...||.|+.-..-. .-++ -..++.++.+.++|||.+..
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 01234445554432 1 11 35799998844321 1122 25778999999999998764
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.12 Score=32.62 Aligned_cols=90 Identities=16% Similarity=0.175 Sum_probs=53.1
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc---c
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE---E 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 76 (131)
+||..|+ |.|.....+++.. +.+++++|.+++..+.+++ .+. ...+-..+.. .
T Consensus 41 ~vlV~Ga~ggiG~~~~~~~~~~------------G~~V~~~~~~~~~~~~~~~----~g~------~~~~d~~~~~~~~~ 98 (198)
T 1pqw_A 41 RVLIHSATGGVGMAAVSIAKMI------------GARIYTTAGSDAKREMLSR----LGV------EYVGDSRSVDFADE 98 (198)
T ss_dssp EEEETTTTSHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHT----TCC------SEEEETTCSTHHHH
T ss_pred EEEEeeCCChHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHH----cCC------CEEeeCCcHHHHHH
Confidence 4677774 4455555555543 4689999999877665543 121 1111111110 0
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. . .....+|+++.+.+ ...+....+.|+|+|+++.+-
T Consensus 99 ~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 99 ILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp HHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred HHHHhCCCCCeEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 0 0 12246999987643 145788889999999998754
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.15 E-value=0.099 Score=36.81 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=58.9
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc----
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE---- 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---- 76 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-++.+++. + - ..+...-.+
T Consensus 188 ~VlV~GaG~vG~~aiqlAk~~G-----------a~~Vi~~~~~~~~~~~a~~l----G-------a-~~i~~~~~~~~~~ 244 (398)
T 1kol_A 188 TVYVAGAGPVGLAAAASARLLG-----------AAVVIVGDLNPARLAHAKAQ----G-------F-EIADLSLDTPLHE 244 (398)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHT----T-------C-EEEETTSSSCHHH
T ss_pred EEEEECCcHHHHHHHHHHHHCC-----------CCeEEEEcCCHHHHHHHHHc----C-------C-cEEccCCcchHHH
Confidence 466678754 677777777643 34799999999887777532 2 1 111111000
Q ss_pred -C-C-CCCCCeeEEEEccccc---------cccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 -L-P-IESDSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 -~-~-~~~~~~D~i~~~~~l~---------~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ . .....+|+|+-.-+-. +.++....+.+..+.|+++|+++++-
T Consensus 245 ~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 245 QIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp HHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 0 0 1124699998765432 12334457888999999999997753
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.27 Score=34.11 Aligned_cols=94 Identities=14% Similarity=0.168 Sum_probs=57.8
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-----ccc
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-----NAE 75 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~ 75 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-.+.+++. ... -+.+... ++.
T Consensus 182 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~a~~l-~~~--------~~~~~~~~~~~~~~~ 241 (363)
T 3m6i_A 182 PVLICGAGPIGLITMLCAKAAG-----------ACPLVITDIDEGRLKFAKEI-CPE--------VVTHKVERLSAEESA 241 (363)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT-----------CCSEEEEESCHHHHHHHHHH-CTT--------CEEEECCSCCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHh-chh--------cccccccccchHHHH
Confidence 456677743 666777777643 33499999999888888765 211 2222211 111
Q ss_pred c-C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 76 E-L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 76 ~-~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+ . . .....+|+|+-..+ ....+....+.|+++|+++++-.
T Consensus 242 ~~v~~~t~g~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 242 KKIVESFGGIEPAVALECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp HHHHHHTSSCCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred HHHHHHhCCCCCCEEEECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 0 0 0 12457999987543 12357788899999999987643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.1 Score=39.53 Aligned_cols=115 Identities=14% Similarity=0.069 Sum_probs=65.5
Q ss_pred ceeeeecccchhhHHHhhhhcCC---CCCCCCCCCCCeEEEEeC---CHHHHHHHHHHhhh---------ccCCCCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKL---PPNTLSEHCAPHVTVADI---NRAMLDVGEQRARD---------LFKVPVP--- 63 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~D~---s~~~~~~~~~~~~~---------~~~~~~~--- 63 (131)
+|+|+|-|+|.+...+.+.+... .+... ....+++.+|. +.+.+..+...++. ..++...
T Consensus 61 ~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~--~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 61 IFAETGFGTGLNFLTLWRDFALFRQQSPNAT--LRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHHHHHCTTSS--CCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred EEEEecCchHHHHHHHHHHHHHhhhhCCCCC--CceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 69999999999988777764211 11100 02368999998 66666654332211 0111100
Q ss_pred --------CCceeEEecccccC-C-CC---CCCeeEEEEcccccc-ccC--HHHHHHHHHHhccCCcEEEE
Q psy890 64 --------NPRLRFLEANAEEL-P-IE---SDSYSAYTIAFGIRN-VTR--IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 64 --------~~~~~~~~~d~~~~-~-~~---~~~~D~i~~~~~l~~-~~~--~~~~l~~~~~~L~p~G~l~~ 118 (131)
.-.+++..+|+.+. + +. ...+|.++.-..--. -++ -..++.++.++++|||.+..
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 01345666675442 2 21 467999988443211 112 15778999999999998753
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.18 Score=34.55 Aligned_cols=90 Identities=14% Similarity=0.070 Sum_probs=53.7
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
++|-.|+ |.|.....+++.. +.+++++|.+++.++.++ .+ +. ...+-..+..+.
T Consensus 148 ~vlV~Ga~ggiG~~~~~~~~~~------------G~~V~~~~~~~~~~~~~~-~~---g~------~~~~d~~~~~~~~~ 205 (333)
T 1v3u_A 148 TVLVSAAAGAVGSVVGQIAKLK------------GCKVVGAAGSDEKIAYLK-QI---GF------DAAFNYKTVNSLEE 205 (333)
T ss_dssp EEEEESTTBHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHH-HT---TC------SEEEETTSCSCHHH
T ss_pred EEEEecCCCcHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHH-hc---CC------cEEEecCCHHHHHH
Confidence 4677776 4555555555543 568999999987777663 22 11 111111110111
Q ss_pred ---CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 ---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+.+|+++.+.+- ..+.+..+.|+++|+++++-
T Consensus 206 ~~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 206 ALKKASPDGYDCYFDNVGG-------EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp HHHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred HHHHHhCCCCeEEEECCCh-------HHHHHHHHHHhcCCEEEEEe
Confidence 0112479999887652 24678889999999998754
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.15 Score=34.74 Aligned_cols=73 Identities=7% Similarity=0.018 Sum_probs=49.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCe-EEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPH-VTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
++++|+-||.|.++..+.+. + -... +.++|+++.+....+.+.. ...++..|+.++.
T Consensus 17 ~~vidLFaG~GG~~~g~~~a-G----------~~~~~v~a~E~d~~a~~ty~~N~~----------~~~~~~~DI~~i~~ 75 (295)
T 2qrv_A 17 IRVLSLFDGIATGLLVLKDL-G----------IQVDRYIASEVCEDSITVGMVRHQ----------GKIMYVGDVRSVTQ 75 (295)
T ss_dssp EEEEEETCTTTHHHHHHHHT-T----------BCEEEEEEECCCHHHHHHHHHHTT----------TCEEEECCGGGCCH
T ss_pred CEEEEeCcCccHHHHHHHHC-C----------CccceEEEEECCHHHHHHHHHhCC----------CCceeCCChHHccH
Confidence 36899999999988776554 1 0112 6999999988877766653 3455667777653
Q ss_pred --CC-CCCeeEEEEccccc
Q psy890 79 --IE-SDSYSAYTIAFGIR 94 (131)
Q Consensus 79 --~~-~~~~D~i~~~~~l~ 94 (131)
++ ...+|+++....+.
T Consensus 76 ~~i~~~~~~Dll~ggpPCQ 94 (295)
T 2qrv_A 76 KHIQEWGPFDLVIGGSPCN 94 (295)
T ss_dssp HHHHHTCCCSEEEECCCCG
T ss_pred HHhcccCCcCEEEecCCCc
Confidence 11 13689999865443
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.19 Score=34.68 Aligned_cols=91 Identities=14% Similarity=0.154 Sum_probs=54.4
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec---cccc-
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA---NAEE- 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~- 76 (131)
+||-+|+|+ |..+..+++..+ ..+++++|.+++-++.+++. +. ...+.. +..+
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~G-----------a~~Vi~~~~~~~~~~~~~~l----Ga-------~~vi~~~~~~~~~~ 226 (352)
T 3fpc_A 169 TVCVIGIGPVGLMSVAGANHLG-----------AGRIFAVGSRKHCCDIALEY----GA-------TDIINYKNGDIVEQ 226 (352)
T ss_dssp CEEEECCSHHHHHHHHHHHTTT-----------CSSEEEECCCHHHHHHHHHH----TC-------CEEECGGGSCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CcEEEEECCCHHHHHHHHHh----CC-------ceEEcCCCcCHHHH
Confidence 466677653 566666666542 33799999998877776543 21 111111 1111
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ . .....+|+|+-...- ...+....+.|+|+|+++.+-
T Consensus 227 v~~~t~g~g~D~v~d~~g~------~~~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 227 ILKATDGKGVDKVVIAGGD------VHTFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp HHHHTTTCCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred HHHHcCCCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEec
Confidence 0 0 123469999875432 135677889999999998754
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.39 Score=28.54 Aligned_cols=91 Identities=11% Similarity=0.024 Sum_probs=54.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
|+=+| .|.++..+++.+.. .+.+++++|.+++.++.+++ . .+.++.+|..+..
T Consensus 10 viIiG--~G~~G~~la~~L~~---------~g~~v~vid~~~~~~~~~~~----~--------g~~~i~gd~~~~~~l~~ 66 (140)
T 3fwz_A 10 ALLVG--YGRVGSLLGEKLLA---------SDIPLVVIETSRTRVDELRE----R--------GVRAVLGNAANEEIMQL 66 (140)
T ss_dssp EEEEC--CSHHHHHHHHHHHH---------TTCCEEEEESCHHHHHHHHH----T--------TCEEEESCTTSHHHHHH
T ss_pred EEEEC--cCHHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHH----c--------CCCEEECCCCCHHHHHh
Confidence 44455 46787777777642 25689999999988776653 1 3556667755431
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..-..+|++++...-. .....+....+.+.|+..++..
T Consensus 67 a~i~~ad~vi~~~~~~---~~n~~~~~~a~~~~~~~~iiar 104 (140)
T 3fwz_A 67 AHLECAKWLILTIPNG---YEAGEIVASARAKNPDIEIIAR 104 (140)
T ss_dssp TTGGGCSEEEECCSCH---HHHHHHHHHHHHHCSSSEEEEE
T ss_pred cCcccCCEEEEECCCh---HHHHHHHHHHHHHCCCCeEEEE
Confidence 1224688887743211 1112234455667788776653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.16 E-value=0.063 Score=36.97 Aligned_cols=54 Identities=19% Similarity=0.118 Sum_probs=38.2
Q ss_pred ceeEEeccccc-CC-CCCCCeeEEEEcccccc--------------ccCHHHHHHHHHHhccCCcEEEEE
Q psy890 66 RLRFLEANAEE-LP-IESDSYSAYTIAFGIRN--------------VTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 66 ~~~~~~~d~~~-~~-~~~~~~D~i~~~~~l~~--------------~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+..++.+|..+ +. ++.++||+|++.-.... .......+.++.++|+|+|.+++.
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~ 83 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 83 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEE
Confidence 57788888654 32 55678999999533211 113567889999999999998774
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.13 Score=35.58 Aligned_cols=87 Identities=9% Similarity=0.067 Sum_probs=55.0
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+||-+|+|. |..+..+++.. +.++++++.+++-.+.+++ .+.. .+ + .+...+ .
T Consensus 179 ~VlV~GaG~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~----lGa~-----~v--~-~~~~~~--~ 232 (348)
T 3two_A 179 KVGVAGFGGLGSMAVKYAVAM------------GAEVSVFARNEHKKQDALS----MGVK-----HF--Y-TDPKQC--K 232 (348)
T ss_dssp EEEEESCSHHHHHHHHHHHHT------------TCEEEEECSSSTTHHHHHH----TTCS-----EE--E-SSGGGC--C
T ss_pred EEEEECCcHHHHHHHHHHHHC------------CCeEEEEeCCHHHHHHHHh----cCCC-----ee--c-CCHHHH--h
Confidence 456677754 66677777764 4689999999887776654 2211 12 2 232222 2
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+.+|+|+-..+-. ..+....+.|+++|+++++-.
T Consensus 233 -~~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 233 -EELDFIISTIPTH------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp -SCEEEEEECCCSC------CCHHHHHTTEEEEEEEEECCC
T ss_pred -cCCCEEEECCCcH------HHHHHHHHHHhcCCEEEEECC
Confidence 2799998754322 135677889999999987643
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.21 Score=34.59 Aligned_cols=92 Identities=12% Similarity=0.123 Sum_probs=55.2
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-----ccc
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-----NAE 75 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~ 75 (131)
+||-+|+|+ |..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-.. +..
T Consensus 174 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~a~~l----Ga~-----~v-i~~~~~~~~~~~ 232 (356)
T 1pl8_A 174 KVLVCGAGPIGMVTLLVAKAMG-----------AAQVVVTDLSATRLSKAKEI----GAD-----LV-LQISKESPQEIA 232 (356)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHT----TCS-----EE-EECSSCCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHh----CCC-----EE-EcCcccccchHH
Confidence 467788754 667777777642 33899999999877776532 211 11 1111 100
Q ss_pred -cC-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 76 -EL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 76 -~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. ......+|+|+-.-+- ...+....+.|+++|+++.+-
T Consensus 233 ~~i~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 273 (356)
T 1pl8_A 233 RKVEGQLGCKPEVTIECTGA------EASIQAGIYATRSGGTLVLVG 273 (356)
T ss_dssp HHHHHHHTSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHHHhCCCCCEEEECCCC------hHHHHHHHHHhcCCCEEEEEe
Confidence 11 0111468999875431 235677889999999998754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=93.92 E-value=0.51 Score=32.89 Aligned_cols=94 Identities=12% Similarity=0.122 Sum_probs=55.8
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
+||-.|+|. |..+..+++..+ ..+++++|.+++-.+.+++. +... -+.+...|..+ . .
T Consensus 185 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~a~~l----Ga~~----vi~~~~~~~~~~i~~ 245 (370)
T 4ej6_A 185 TVAILGGGVIGLLTVQLARLAG-----------ATTVILSTRQATKRRLAEEV----GATA----TVDPSAGDVVEAIAG 245 (370)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCHHHHHHHHHH----TCSE----EECTTSSCHHHHHHS
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHc----CCCE----EECCCCcCHHHHHHh
Confidence 455667643 666777777643 34899999999877776642 2110 01000111111 0 0
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+.+|+|+-.-+ ....+..+.+.|+++|+++++-
T Consensus 246 ~~~~~~gg~Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 246 PVGLVPGGVDVVIECAG------VAETVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp TTSSSTTCEEEEEECSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred hhhccCCCCCEEEECCC------CHHHHHHHHHHhccCCEEEEEe
Confidence 22347999987533 1345788889999999998754
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=0.28 Score=33.66 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=54.6
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-.|+ |.|.....+++.. +.++++++.+++.++.+++.+ +. ...+-..+..++.
T Consensus 158 ~vlI~Ga~g~iG~~~~~~a~~~------------G~~V~~~~~~~~~~~~~~~~~---g~------~~~~d~~~~~~~~~ 216 (345)
T 2j3h_A 158 TVYVSAASGAVGQLVGQLAKMM------------GCYVVGSAGSKEKVDLLKTKF---GF------DDAFNYKEESDLTA 216 (345)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHTS---CC------SEEEETTSCSCSHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHHc---CC------ceEEecCCHHHHHH
Confidence 4677776 4556666666653 468999999987777665332 21 1111111111110
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|+++.+.+- ..+....+.|+++|+++++-
T Consensus 217 ~~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 217 ALKRCFPNGIDIYFENVGG-------KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp HHHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred HHHHHhCCCCcEEEECCCH-------HHHHHHHHHHhcCCEEEEEc
Confidence 112469999876542 35788889999999988753
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.23 Score=34.10 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=55.5
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE-L 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~-~ 77 (131)
+||-.|+|. |..+..+++.. +.+++++|.+++-.+.+++. +. ...+-..+ ..+ .
T Consensus 169 ~VlV~GaG~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga------~~~i~~~~~~~~~~~ 226 (340)
T 3s2e_A 169 WVVISGIGGLGHVAVQYARAM------------GLRVAAVDIDDAKLNLARRL----GA------EVAVNARDTDPAAWL 226 (340)
T ss_dssp EEEEECCSTTHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHT----TC------SEEEETTTSCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCeEEEEeCCHHHHHHHHHc----CC------CEEEeCCCcCHHHHH
Confidence 456678754 77777777764 46999999999887776542 21 11111111 100 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+.+|+|+...+ ....+..+.+.|+++|+++++-
T Consensus 227 ~~~~g~~d~vid~~g------~~~~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 227 QKEIGGAHGVLVTAV------SPKAFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp HHHHSSEEEEEESSC------CHHHHHHHHHHEEEEEEEEECS
T ss_pred HHhCCCCCEEEEeCC------CHHHHHHHHHHhccCCEEEEeC
Confidence 001136898876532 2345788889999999998753
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.63 Score=27.45 Aligned_cols=68 Identities=10% Similarity=0.099 Sum_probs=42.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|+-+|+ |.++..+++.+.. .+.+++++|.+++.++.+++. ...++.+|..+..
T Consensus 8 ~v~I~G~--G~iG~~la~~L~~---------~g~~V~~id~~~~~~~~~~~~------------~~~~~~gd~~~~~~l~ 64 (141)
T 3llv_A 8 EYIVIGS--EAAGVGLVRELTA---------AGKKVLAVDKSKEKIELLEDE------------GFDAVIADPTDESFYR 64 (141)
T ss_dssp SEEEECC--SHHHHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHT------------TCEEEECCTTCHHHHH
T ss_pred EEEEECC--CHHHHHHHHHHHH---------CCCeEEEEECCHHHHHHHHHC------------CCcEEECCCCCHHHHH
Confidence 4566666 6687777776642 256899999999877665431 3455666655421
Q ss_pred -CCCCCeeEEEEccc
Q psy890 79 -IESDSYSAYTIAFG 92 (131)
Q Consensus 79 -~~~~~~D~i~~~~~ 92 (131)
..-..+|.|+....
T Consensus 65 ~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 65 SLDLEGVSAVLITGS 79 (141)
T ss_dssp HSCCTTCSEEEECCS
T ss_pred hCCcccCCEEEEecC
Confidence 12346898887543
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.31 E-value=0.9 Score=29.02 Aligned_cols=93 Identities=8% Similarity=0.022 Sum_probs=56.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+|+=+|+ |..+..+++.+.+ .+.+++++|.+++.++...+.. ...++.+|..+..
T Consensus 1 M~iiIiG~--G~~G~~la~~L~~---------~g~~v~vid~~~~~~~~l~~~~-----------~~~~i~gd~~~~~~l 58 (218)
T 3l4b_C 1 MKVIIIGG--ETTAYYLARSMLS---------RKYGVVIINKDRELCEEFAKKL-----------KATIIHGDGSHKEIL 58 (218)
T ss_dssp CCEEEECC--HHHHHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHHS-----------SSEEEESCTTSHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHh---------CCCeEEEEECCHHHHHHHHHHc-----------CCeEEEcCCCCHHHH
Confidence 66777775 7788888777642 2568999999998776544322 3456777765432
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..-..+|+|++...-. .....+....+.+.|...++.
T Consensus 59 ~~a~i~~ad~vi~~~~~d---~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 59 RDAEVSKNDVVVILTPRD---EVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp HHHTCCTTCEEEECCSCH---HHHHHHHHHHHHTSCCCEEEE
T ss_pred HhcCcccCCEEEEecCCc---HHHHHHHHHHHHHcCCCeEEE
Confidence 1124679888753211 223344555555566666654
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.57 Score=32.26 Aligned_cols=90 Identities=14% Similarity=0.154 Sum_probs=54.3
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
+||-+|+| .|..+..+++.. +. ++++++.+++-++.+++. +.. . .+..+..++
T Consensus 170 ~VlV~GaG~vG~~~~q~a~~~------------Ga~~Vi~~~~~~~~~~~~~~~----Ga~-----~--~~~~~~~~~~~ 226 (348)
T 2d8a_A 170 SVLITGAGPLGLLGIAVAKAS------------GAYPVIVSEPSDFRRELAKKV----GAD-----Y--VINPFEEDVVK 226 (348)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------------TCCSEEEECSCHHHHHHHHHH----TCS-----E--EECTTTSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHHh----CCC-----E--EECCCCcCHHH
Confidence 46777774 356666666654 34 899999998877776532 111 1 111111110
Q ss_pred ---C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 ---P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ---~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .....+|+|+..... ...+.++.+.|+++|+++.+-
T Consensus 227 ~v~~~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 267 (348)
T 2d8a_A 227 EVMDITDGNGVDVFLEFSGA------PKALEQGLQAVTPAGRVSLLG 267 (348)
T ss_dssp HHHHHTTTSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHcCCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEc
Confidence 0 122469999876442 245678889999999988754
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.25 E-value=0.092 Score=36.03 Aligned_cols=91 Identities=9% Similarity=-0.102 Sum_probs=54.9
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE- 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~- 76 (131)
+||-.|+ |.|..+..+++.. +.++++++.+++-.+.+.+.+ +. ...+-..+ ..+
T Consensus 152 ~vlI~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~~~---g~------~~~~~~~~~~~~~~ 210 (336)
T 4b7c_A 152 TVVISGAAGAVGSVAGQIARLK------------GCRVVGIAGGAEKCRFLVEEL---GF------DGAIDYKNEDLAAG 210 (336)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHTT---CC------SEEEETTTSCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHHc---CC------CEEEECCCHHHHHH
Confidence 4666776 4566666666653 569999999987777663322 21 11111111 100
Q ss_pred C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. ....+.+|+++.+.+- ..+..+.+.|+++|+++++-
T Consensus 211 ~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 211 LKRECPKGIDVFFDNVGG-------EILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp HHHHCTTCEEEEEESSCH-------HHHHHHHTTEEEEEEEEECC
T ss_pred HHHhcCCCceEEEECCCc-------chHHHHHHHHhhCCEEEEEe
Confidence 0 0113469999876542 36788889999999998753
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.23 E-value=0.13 Score=37.49 Aligned_cols=77 Identities=8% Similarity=0.027 Sum_probs=50.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 79 (131)
++++|+-||.|-++.-+.+. +...+.++|+++.+.+.-+.++.... ...++..|+.++..
T Consensus 89 ~~viDLFaG~GGlslG~~~a------------G~~~v~avE~d~~A~~ty~~N~~~~p-------~~~~~~~DI~~i~~~ 149 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESI------------GGQCVFTSEWNKHAVRTYKANHYCDP-------ATHHFNEDIRDITLS 149 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTT------------TEEEEEEECCCHHHHHHHHHHSCCCT-------TTCEEESCTHHHHCT
T ss_pred ceEEEecCCccHHHHHHHHC------------CCEEEEEEeCCHHHHHHHHHhcccCC-------Ccceeccchhhhhhc
Confidence 36899999999988777553 23458999999988887777763211 34455566654421
Q ss_pred ----------------CCCCeeEEEEccccccc
Q psy890 80 ----------------ESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 80 ----------------~~~~~D~i~~~~~l~~~ 96 (131)
....+|+++....+..+
T Consensus 150 ~~~~~~~~~~~~~i~~~~~~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 150 HQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPF 182 (482)
T ss_dssp TCTTSCHHHHHHHHHHHSCCCSEEEEECCCCCC
T ss_pred cccccchhhHHhhhhhcCCCCCEEEecCCCcch
Confidence 11357999876665544
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.25 Score=34.38 Aligned_cols=90 Identities=14% Similarity=0.067 Sum_probs=54.9
Q ss_pred eeeee-c-ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec-cccc-C-
Q psy890 3 ILFYL-V-FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA-NAEE-L- 77 (131)
Q Consensus 3 iLdig-~-G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~-~- 77 (131)
||=.| + +.|..+..+++.+. +.++++++.+++-++.+++. +.. .+ +-.. +..+ .
T Consensus 175 VlV~Ga~G~vG~~a~qlak~~~-----------g~~Vi~~~~~~~~~~~~~~l----Gad-----~v-i~~~~~~~~~v~ 233 (363)
T 4dvj_A 175 ILIVGGAGGVGSIAVQIARQRT-----------DLTVIATASRPETQEWVKSL----GAH-----HV-IDHSKPLAAEVA 233 (363)
T ss_dssp EEEESTTSHHHHHHHHHHHHHC-----------CSEEEEECSSHHHHHHHHHT----TCS-----EE-ECTTSCHHHHHH
T ss_pred EEEECCCCHHHHHHHHHHHHhc-----------CCEEEEEeCCHHHHHHHHHc----CCC-----EE-EeCCCCHHHHHH
Confidence 45555 3 44667777777643 67999999998877776542 211 11 1000 1110 0
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....+.+|+|+-..+ ....+..+.+.|+++|+++++
T Consensus 234 ~~~~~g~Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 234 ALGLGAPAFVFSTTH------TDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp TTCSCCEEEEEECSC------HHHHHHHHHHHSCTTCEEEEC
T ss_pred HhcCCCceEEEECCC------chhhHHHHHHHhcCCCEEEEE
Confidence 123457999987433 234678888999999999876
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.38 Score=33.03 Aligned_cols=90 Identities=13% Similarity=0.024 Sum_probs=53.7
Q ss_pred ceeeeecc--cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc-
Q psy890 2 YILFYLVF--PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE- 76 (131)
Q Consensus 2 ~iLdig~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~- 76 (131)
+||-+|+| .|..+..+++.. +.++++++.+++-++.+++. +. ...+-..+ ..+
T Consensus 147 ~VlV~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~l----ga------~~~~~~~~~~~~~~ 204 (340)
T 3gms_A 147 VLLVNACGSAIGHLFAQLSQIL------------NFRLIAVTRNNKHTEELLRL----GA------AYVIDTSTAPLYET 204 (340)
T ss_dssp EEEESSTTSHHHHHHHHHHHHH------------TCEEEEEESSSTTHHHHHHH----TC------SEEEETTTSCHHHH
T ss_pred EEEEeCCccHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHhC----CC------cEEEeCCcccHHHH
Confidence 46677775 566777777764 46899999988877777652 21 11111111 110
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. . .....+|+|+...+-. ...+..+.|+++|+++++-
T Consensus 205 ~~~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~G 243 (340)
T 3gms_A 205 VMELTNGIGADAAIDSIGGP-------DGNELAFSLRPNGHFLTIG 243 (340)
T ss_dssp HHHHTTTSCEEEEEESSCHH-------HHHHHHHTEEEEEEEEECC
T ss_pred HHHHhCCCCCcEEEECCCCh-------hHHHHHHHhcCCCEEEEEe
Confidence 0 0 1234799998765422 1233458899999998764
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.31 Score=33.86 Aligned_cols=90 Identities=12% Similarity=0.069 Sum_probs=54.9
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+||-+|+|. |..+..+++.. +.++++++.+++-++.+++. +. . ..+..+..++.
T Consensus 192 ~VlV~G~G~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga------~-~vi~~~~~~~~~~ 248 (363)
T 3uog_A 192 RVVVQGTGGVALFGLQIAKAT------------GAEVIVTSSSREKLDRAFAL----GA------D-HGINRLEEDWVER 248 (363)
T ss_dssp EEEEESSBHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHH----TC------S-EEEETTTSCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCEEEEEecCchhHHHHHHc----CC------C-EEEcCCcccHHHH
Confidence 466677643 66666677664 56899999998877776542 21 1 11111111110
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.....+|+|+-..+- ..+....+.|+++|+++++-.
T Consensus 249 v~~~~~g~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 249 VYALTGDRGADHILEIAGG-------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp HHHHHTTCCEEEEEEETTS-------SCHHHHHHHEEEEEEEEEECC
T ss_pred HHHHhCCCCceEEEECCCh-------HHHHHHHHHhhcCCEEEEEec
Confidence 123479999876541 235677889999999987643
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.83 E-value=0.33 Score=33.91 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=53.7
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CC
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PI 79 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~ 79 (131)
+||-+|+|+ |..+..+++.. +.++++++.+++-++.+++ + +.. .+ +-..+.... ..
T Consensus 197 ~VlV~GaG~vG~~aiqlak~~------------Ga~Vi~~~~~~~~~~~a~~-l---Ga~-----~v-i~~~~~~~~~~~ 254 (369)
T 1uuf_A 197 KVGVVGIGGLGHMGIKLAHAM------------GAHVVAFTTSEAKREAAKA-L---GAD-----EV-VNSRNADEMAAH 254 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESSGGGHHHHHH-H---TCS-----EE-EETTCHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHH-c---CCc-----EE-eccccHHHHHHh
Confidence 466678754 66667777664 4679999999888777764 2 211 11 111110000 11
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. ..+|+|+...+-. ..+....+.|+++|+++.+-
T Consensus 255 ~-~g~Dvvid~~g~~------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 255 L-KSFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp T-TCEEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred h-cCCCEEEECCCCH------HHHHHHHHHhccCCEEEEec
Confidence 1 4799998754421 12566778999999987653
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.11 Score=35.92 Aligned_cols=93 Identities=8% Similarity=0.008 Sum_probs=55.9
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEe-cc-cccC
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLE-AN-AEEL 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~d-~~~~ 77 (131)
+||-+|+|. |..+..+++... ++.++++++.+++-++.+++. +.. .+ .... .+ ....
T Consensus 173 ~VlV~GaG~vG~~aiqlak~~~----------~Ga~Vi~~~~~~~~~~~~~~l----Ga~-----~vi~~~~~~~~~~~~ 233 (344)
T 2h6e_A 173 VVIVNGIGGLAVYTIQILKALM----------KNITIVGISRSKKHRDFALEL----GAD-----YVSEMKDAESLINKL 233 (344)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC----------TTCEEEEECSCHHHHHHHHHH----TCS-----EEECHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHhc----------CCCEEEEEeCCHHHHHHHHHh----CCC-----EEeccccchHHHHHh
Confidence 467777743 666777777641 146799999999887777542 211 11 0000 11 0111
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. ....+|+|+..-+- ...+....+.|+++|+++.+-
T Consensus 234 ~-~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 234 T-DGLGASIAIDLVGT------EETTYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp H-TTCCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred h-cCCCccEEEECCCC------hHHHHHHHHHhhcCCEEEEeC
Confidence 1 12369999876442 235778889999999988753
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.4 Score=32.61 Aligned_cols=89 Identities=15% Similarity=0.112 Sum_probs=55.1
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CC
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PI 79 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~ 79 (131)
||=.|+ +.|..+..+++.. +.++++++.+++-.+.+++. +. ...+-..+.... ..
T Consensus 150 VlV~Ga~G~vG~~aiqla~~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga------~~vi~~~~~~~~~~~ 207 (324)
T 3nx4_A 150 VVVTGASGGVGSTAVALLHKL------------GYQVAAVSGRESTHGYLKSL----GA------NRILSRDEFAESRPL 207 (324)
T ss_dssp EEESSTTSHHHHHHHHHHHHT------------TCCEEEEESCGGGHHHHHHH----TC------SEEEEGGGSSCCCSS
T ss_pred EEEECCCcHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHhc----CC------CEEEecCCHHHHHhh
Confidence 455554 4566777777764 46899999998877777642 21 111111111111 12
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+|+|+-.-+ ...+.+..+.|+++|+++.+-
T Consensus 208 ~~~~~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~G 241 (324)
T 3nx4_A 208 EKQLWAGAIDTVG-------DKVLAKVLAQMNYGGCVAACG 241 (324)
T ss_dssp CCCCEEEEEESSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred cCCCccEEEECCC-------cHHHHHHHHHHhcCCEEEEEe
Confidence 3457999876533 126788899999999998753
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.68 E-value=0.038 Score=38.12 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=52.7
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEeccccc-C
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEE-L 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~-~ 77 (131)
+||-+|+| .|..+..+++.. +. ++++++.+++-++.+++. .. .+ .....++.+ .
T Consensus 167 ~VlV~GaG~vG~~~~q~a~~~------------Ga~~Vi~~~~~~~~~~~~~~l-a~---------~v~~~~~~~~~~~~ 224 (343)
T 2dq4_A 167 SVLITGAGPIGLMAAMVVRAS------------GAGPILVSDPNPYRLAFARPY-AD---------RLVNPLEEDLLEVV 224 (343)
T ss_dssp CEEEECCSHHHHHHHHHHHHT------------TCCSEEEECSCHHHHGGGTTT-CS---------EEECTTTSCHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCCEEEEECCCHHHHHHHHHh-HH---------hccCcCccCHHHHH
Confidence 46777763 356666666664 45 899999988666555432 11 11 000001100 0
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+...+- ...+.+..+.|+++|+++.+-
T Consensus 225 ~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g 262 (343)
T 2dq4_A 225 RRVTGSGVEVLLEFSGN------EAAIHQGLMALIPGGEARILG 262 (343)
T ss_dssp HHHHSSCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHhcCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 0113469999875442 245678889999999988753
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.76 Score=31.90 Aligned_cols=89 Identities=13% Similarity=0.042 Sum_probs=54.5
Q ss_pred ceeeee--cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
+||-.| .|.|..+..+++.. +.++++++.+++-++.+++ .+. .. .+..+-.+.
T Consensus 166 ~VlV~Ga~G~iG~~~~q~a~~~------------Ga~Vi~~~~~~~~~~~~~~----~Ga------~~-~~~~~~~~~~~ 222 (362)
T 2c0c_A 166 KVLVTAAAGGTGQFAMQLSKKA------------KCHVIGTCSSDEKSAFLKS----LGC------DR-PINYKTEPVGT 222 (362)
T ss_dssp EEEETTTTBTTHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHH----TTC------SE-EEETTTSCHHH
T ss_pred EEEEeCCCcHHHHHHHHHHHhC------------CCEEEEEECCHHHHHHHHH----cCC------cE-EEecCChhHHH
Confidence 456666 35566666666664 4689999999877777654 121 11 111111110
Q ss_pred ---CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 ---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+...+- ..+..+.+.|+++|+++++-
T Consensus 223 ~~~~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 223 VLKQEYPEGVDVVYESVGG-------AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp HHHHHCTTCEEEEEECSCT-------HHHHHHHHHEEEEEEEEECC
T ss_pred HHHHhcCCCCCEEEECCCH-------HHHHHHHHHHhcCCEEEEEe
Confidence 0112469999876542 46778889999999988754
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=0.26 Score=33.91 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=56.9
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-.+.+++. +.. .+.-...+..+ . .
T Consensus 174 ~vlv~GaG~vG~~a~qla~~~g-----------~~~Vi~~~~~~~~~~~~~~l----Ga~-----~~i~~~~~~~~~v~~ 233 (345)
T 3jv7_A 174 TAVVIGVGGLGHVGIQILRAVS-----------AARVIAVDLDDDRLALAREV----GAD-----AAVKSGAGAADAIRE 233 (345)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-----------CCEEEEEESCHHHHHHHHHT----TCS-----EEEECSTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcCCHHHHHHHHHc----CCC-----EEEcCCCcHHHHHHH
Confidence 456667654 677777777753 67899999999887777542 211 11100111110 0 0
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|+|+-.-+- ...+..+.+.|+++|+++++-
T Consensus 234 ~t~g~g~d~v~d~~G~------~~~~~~~~~~l~~~G~iv~~G 270 (345)
T 3jv7_A 234 LTGGQGATAVFDFVGA------QSTIDTAQQVVAVDGHISVVG 270 (345)
T ss_dssp HHGGGCEEEEEESSCC------HHHHHHHHHHEEEEEEEEECS
T ss_pred HhCCCCCeEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 112369999875431 236788899999999998764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=92.43 E-value=1.3 Score=31.25 Aligned_cols=92 Identities=10% Similarity=0.046 Sum_probs=52.0
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||=+|+| .|..+..+++..+ ..+++++|.+++-++.+++. +. . ..+..+-.++
T Consensus 216 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~~~~l----Ga------~-~vi~~~~~~~~~~ 273 (404)
T 3ip1_A 216 NVVILGGGPIGLAAVAILKHAG-----------ASKVILSEPSEVRRNLAKEL----GA------D-HVIDPTKENFVEA 273 (404)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCHHHHHHHHHH----TC------S-EEECTTTSCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEECCCHHHHHHHHHc----CC------C-EEEcCCCCCHHHH
Confidence 35556764 3566666676643 34899999999887777543 21 1 1111111111
Q ss_pred --C-CCCCCeeEEEEccccccccCHHHHHHHHHHhc----cCCcEEEEEe
Q psy890 78 --P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVL----KPGGRFLCLE 120 (131)
Q Consensus 78 --~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L----~p~G~l~~~~ 120 (131)
. .....+|+|+-.-+ .....+..+.+.| +++|+++++-
T Consensus 274 i~~~t~g~g~D~vid~~g-----~~~~~~~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 274 VLDYTNGLGAKLFLEATG-----VPQLVWPQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp HHHHTTTCCCSEEEECSS-----CHHHHHHHHHHHHHHCSCCCCEEEECS
T ss_pred HHHHhCCCCCCEEEECCC-----CcHHHHHHHHHHHHhccCCCcEEEEeC
Confidence 0 12346999986433 2223445555556 9999998753
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=1.6 Score=29.27 Aligned_cols=103 Identities=15% Similarity=0.164 Sum_probs=60.9
Q ss_pred eeeeecccc-hhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.|+++| -+...+++.+-. .+.+|+.++.++...+.+.+.....+ ++.++..|+.+..
T Consensus 34 ~lVTGasg~~GIG~aia~~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~ 97 (293)
T 3grk_A 34 GLILGVANNRSIAWGIAKAARE---------AGAELAFTYQGDALKKRVEPLAEELG-------AFVAGHCDVADAASID 97 (293)
T ss_dssp EEEECCCSSSSHHHHHHHHHHH---------TTCEEEEEECSHHHHHHHHHHHHHHT-------CEEEEECCTTCHHHHH
T ss_pred EEEEcCCCCCcHHHHHHHHHHH---------CCCEEEEEcCCHHHHHHHHHHHHhcC-------CceEEECCCCCHHHHH
Confidence 454555422 255555554421 36789999988765555554444433 6788888877642
Q ss_pred --C-----CCCCeeEEEEcccccc----------cc--C-----------HHHHHHHHHHhccCCcEEEEEec
Q psy890 79 --I-----ESDSYSAYTIAFGIRN----------VT--R-----------IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 --~-----~~~~~D~i~~~~~l~~----------~~--~-----------~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+ ..+..|+++.+.+... .. + .....+.+.+.|+.+|.++.+..
T Consensus 98 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 98 AVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp HHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred HHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 1 1246899998876542 00 1 12345566677778888877653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.87 Score=31.65 Aligned_cols=92 Identities=10% Similarity=-0.055 Sum_probs=54.8
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec----cccc
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA----NAEE 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~ 76 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-.. ++.+
T Consensus 194 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~a~~l----Ga~-----~v-i~~~~~~~~~~~ 252 (373)
T 1p0f_A 194 TCAVFGLGGVGFSAIVGCKAAG-----------ASRIIGVGTHKDKFPKAIEL----GAT-----EC-LNPKDYDKPIYE 252 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEECSCGGGHHHHHHT----TCS-----EE-ECGGGCSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCeEEEECCCHHHHHHHHHc----CCc-----EE-EecccccchHHH
Confidence 466677643 666777777653 33799999998877776532 211 11 1111 1110
Q ss_pred -C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEe
Q psy890 77 -L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 120 (131)
Q Consensus 77 -~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~ 120 (131)
. ....+.+|+|+-.-+- ...+....+.|+++ |+++.+-
T Consensus 253 ~i~~~t~gg~Dvvid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 253 VICEKTNGGVDYAVECAGR------IETMMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp HHHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHhCCCCCEEEECCCC------HHHHHHHHHHHhcCCCEEEEEc
Confidence 0 0112379999875432 34578888999999 9988754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.35 E-value=0.53 Score=32.49 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=54.6
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||-+|+|. |..+..+++.. +.+++++|.+++-.+.+++. +. ...+-..+..+.
T Consensus 171 ~VlV~GaG~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga------~~~~~~~~~~~~~~~ 228 (352)
T 1e3j_A 171 TVLVIGAGPIGLVSVLAAKAY------------GAFVVCTARSPRRLEVAKNC----GA------DVTLVVDPAKEEESS 228 (352)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHT----TC------SEEEECCTTTSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCEEEEEcCCHHHHHHHHHh----CC------CEEEcCcccccHHHH
Confidence 466677753 66677777764 45699999999877776532 21 111111110111
Q ss_pred -C--CC---CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -P--IE---SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~--~~---~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .. ...+|+|+....- ...+....+.|+++|+++.+-
T Consensus 229 i~~~~~~~~g~g~D~vid~~g~------~~~~~~~~~~l~~~G~iv~~G 271 (352)
T 1e3j_A 229 IIERIRSAIGDLPNVTIDCSGN------EKCITIGINITRTGGTLMLVG 271 (352)
T ss_dssp HHHHHHHHSSSCCSEEEECSCC------HHHHHHHHHHSCTTCEEEECS
T ss_pred HHHHhccccCCCCCEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 0 11 2469999875431 235677889999999998754
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.25 E-value=0.71 Score=31.55 Aligned_cols=89 Identities=17% Similarity=0.254 Sum_probs=53.9
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-.|+ |-|..+..+++.. +.++++++.+++-++.+++. +. .. .+..+-.+..
T Consensus 151 ~vlV~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~~----ga------~~-~~~~~~~~~~~ 207 (334)
T 3qwb_A 151 YVLLFAAAGGVGLILNQLLKMK------------GAHTIAVASTDEKLKIAKEY----GA------EY-LINASKEDILR 207 (334)
T ss_dssp EEEESSTTBHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHT----TC------SE-EEETTTSCHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHc----CC------cE-EEeCCCchHHH
Confidence 3566663 4556666666653 56899999998877766542 21 11 1111111110
Q ss_pred -----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|+|+...+- ..+..+.+.|+++|+++.+-
T Consensus 208 ~~~~~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 208 QVLKFTNGKGVDASFDSVGK-------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp HHHHHTTTSCEEEEEECCGG-------GGHHHHHHHEEEEEEEEECC
T ss_pred HHHHHhCCCCceEEEECCCh-------HHHHHHHHHhccCCEEEEEc
Confidence 123469999876542 34677888999999998753
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.94 Score=31.45 Aligned_cols=92 Identities=13% Similarity=0.069 Sum_probs=54.7
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc----ccc
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN----AEE 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~ 76 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-..+ +.+
T Consensus 193 ~VlV~GaG~vG~~avqla~~~G-----------a~~Vi~~~~~~~~~~~~~~l----Ga~-----~v-i~~~~~~~~~~~ 251 (373)
T 2fzw_A 193 VCAVFGLGGVGLAVIMGCKVAG-----------ASRIIGVDINKDKFARAKEF----GAT-----EC-INPQDFSKPIQE 251 (373)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEECSCGGGHHHHHHH----TCS-----EE-ECGGGCSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCeEEEEcCCHHHHHHHHHc----CCc-----eE-eccccccccHHH
Confidence 456677643 666777777653 33799999998877777532 211 11 11111 100
Q ss_pred -C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEe
Q psy890 77 -L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 120 (131)
Q Consensus 77 -~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~ 120 (131)
. ....+.+|+|+-.-+- ...+..+.+.|+++ |+++++-
T Consensus 252 ~v~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 252 VLIEMTDGGVDYSFECIGN------VKVMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp HHHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHhCCCCCEEEECCCc------HHHHHHHHHhhccCCcEEEEEe
Confidence 0 0112369999875432 34578888999999 9988754
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.02 E-value=0.62 Score=31.73 Aligned_cols=90 Identities=10% Similarity=0.023 Sum_probs=53.4
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc---c
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE---E 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 76 (131)
+||-.|+ |.|.....+++.. +.++++++.+++..+.+++. +. ...+-..+.. .
T Consensus 143 ~vlV~Ga~ggiG~~~~~~a~~~------------G~~V~~~~~~~~~~~~~~~~----g~------~~~~~~~~~~~~~~ 200 (327)
T 1qor_A 143 QFLFHAAAGGVGLIACQWAKAL------------GAKLIGTVGTAQKAQSALKA----GA------WQVINYREEDLVER 200 (327)
T ss_dssp EEEESSTTBHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH----TC------SEEEETTTSCHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHc----CC------CEEEECCCccHHHH
Confidence 3566663 4555566666553 46899999998777776542 11 1111111110 0
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. . .....+|+++.+.+ ...+..+.+.|+++|+++++-
T Consensus 201 ~~~~~~~~~~D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 201 LKEITGGKKVRVVYDSVG-------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp HHHHTTTCCEEEEEECSC-------GGGHHHHHHTEEEEEEEEECC
T ss_pred HHHHhCCCCceEEEECCc-------hHHHHHHHHHhcCCCEEEEEe
Confidence 0 0 12346999988765 134677889999999988754
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=91.75 E-value=0.2 Score=34.68 Aligned_cols=91 Identities=8% Similarity=-0.065 Sum_probs=52.9
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCC-eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAP-HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~ 76 (131)
+||-.|+ |.|.....+++.. +. ++++++.+++-.+.+++.+ +. ...+-..+ ..+
T Consensus 163 ~vlI~GasggiG~~~~~~a~~~------------Ga~~Vi~~~~~~~~~~~~~~~~---g~------~~~~d~~~~~~~~ 221 (357)
T 2zb4_A 163 TMVVSGAAGACGSVAGQIGHFL------------GCSRVVGICGTHEKCILLTSEL---GF------DAAINYKKDNVAE 221 (357)
T ss_dssp EEEESSTTBHHHHHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHTS---CC------SEEEETTTSCHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC------------CCCeEEEEeCCHHHHHHHHHHc---CC------ceEEecCchHHHH
Confidence 3566665 4455555555543 45 8999999987766665422 21 11111111 000
Q ss_pred -C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 -L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 -~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. ....+.+|+++.+.+ ...+....+.|+++|+++++-
T Consensus 222 ~~~~~~~~~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 222 QLRESCPAGVDVYFDNVG-------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp HHHHHCTTCEEEEEESCC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHhcCCCCCEEEECCC-------HHHHHHHHHHhccCcEEEEEC
Confidence 0 011226999988665 256788889999999988753
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.64 E-value=0.81 Score=31.83 Aligned_cols=92 Identities=11% Similarity=0.032 Sum_probs=54.1
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc----ccc
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN----AEE 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~ 76 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-..+ +.+
T Consensus 195 ~VlV~GaG~vG~~a~qla~~~G-----------a~~Vi~~~~~~~~~~~~~~l----Ga~-----~v-i~~~~~~~~~~~ 253 (374)
T 1cdo_A 195 TCAVFGLGAVGLAAVMGCHSAG-----------AKRIIAVDLNPDKFEKAKVF----GAT-----DF-VNPNDHSEPISQ 253 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHHT----TCC-----EE-ECGGGCSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCEEEEEcCCHHHHHHHHHh----CCc-----eE-EeccccchhHHH
Confidence 456677643 566667777642 23799999998877776532 211 11 11111 100
Q ss_pred -C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEe
Q psy890 77 -L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 120 (131)
Q Consensus 77 -~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~ 120 (131)
. ....+.+|+|+-.-+- ...+..+.+.|+++ |+++++-
T Consensus 254 ~~~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 254 VLSKMTNGGVDFSLECVGN------VGVMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp HHHHHHTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHhCCCCCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEc
Confidence 0 0112369999875432 34577888999999 9988753
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.18 Score=34.77 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=36.3
Q ss_pred ceeEE-ecccccC--CCCCCCeeEEEEcccc--c---------cccCHHHHHHHHHHhccCCcEEEEE
Q psy890 66 RLRFL-EANAEEL--PIESDSYSAYTIAFGI--R---------NVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 66 ~~~~~-~~d~~~~--~~~~~~~D~i~~~~~l--~---------~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++ .+|..+. .++.+++|+|++.-.. . +.......+.++.++|+|+|.+++.
T Consensus 38 ~~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~ 105 (319)
T 1eg2_A 38 TRHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 105 (319)
T ss_dssp EEEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 45666 8886542 2456789999994322 1 1113457788889999999998774
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=91.58 E-value=1.1 Score=31.24 Aligned_cols=92 Identities=11% Similarity=0.022 Sum_probs=53.8
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc----ccc
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN----AEE 76 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~ 76 (131)
+||-+|+|. |..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-..+ +.+
T Consensus 194 ~VlV~GaG~vG~~a~qla~~~G-----------a~~Vi~~~~~~~~~~~~~~l----Ga~-----~v-i~~~~~~~~~~~ 252 (374)
T 2jhf_A 194 TCAVFGLGGVGLSVIMGCKAAG-----------AARIIGVDINKDKFAKAKEV----GAT-----EC-VNPQDYKKPIQE 252 (374)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHHT----TCS-----EE-ECGGGCSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCeEEEEcCCHHHHHHHHHh----CCc-----eE-ecccccchhHHH
Confidence 456677643 566666666642 23799999998877776532 211 11 11111 110
Q ss_pred -C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEe
Q psy890 77 -L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 120 (131)
Q Consensus 77 -~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~ 120 (131)
. ....+.+|+|+-.-.- ...+....+.|+++ |+++++-
T Consensus 253 ~~~~~~~~g~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 253 VLTEMSNGGVDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp HHHHHTTSCBSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred HHHHHhCCCCcEEEECCCC------HHHHHHHHHHhhcCCcEEEEec
Confidence 0 0112369999875432 24567888999999 9988753
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=91.49 E-value=1.6 Score=29.73 Aligned_cols=91 Identities=9% Similarity=0.041 Sum_probs=55.0
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE- 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~- 76 (131)
+||-.|+ |.|..+..+++.. +.++++++.+++-++.+++. +. ...+-..+ ..+
T Consensus 143 ~VlV~Ga~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~~----Ga------~~~~~~~~~~~~~~ 200 (325)
T 3jyn_A 143 IILFHAAAGGVGSLACQWAKAL------------GAKLIGTVSSPEKAAHAKAL----GA------WETIDYSHEDVAKR 200 (325)
T ss_dssp EEEESSTTSHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH----TC------SEEEETTTSCHHHH
T ss_pred EEEEEcCCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHc----CC------CEEEeCCCccHHHH
Confidence 3555662 4566666677664 46899999999877777642 21 11111111 100
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. . .....+|+|+...+- ..+....+.|+++|+++++-.
T Consensus 201 ~~~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 201 VLELTDGKKCPVVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp HHHHTTTCCEEEEEESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred HHHHhCCCCceEEEECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence 0 0 123479999876542 246778899999999987643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.44 Score=32.31 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=50.3
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+||-.|+| .|..+..+++.. +.++++++ +++-.+.+++. + -...+. |...+
T Consensus 145 ~VlV~GaG~vG~~a~qlak~~------------Ga~Vi~~~-~~~~~~~~~~l----G-------a~~v~~-d~~~v--- 196 (315)
T 3goh_A 145 EVLIVGFGAVNNLLTQMLNNA------------GYVVDLVS-ASLSQALAAKR----G-------VRHLYR-EPSQV--- 196 (315)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCEEEEEC-SSCCHHHHHHH----T-------EEEEES-SGGGC---
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCEEEEEE-ChhhHHHHHHc----C-------CCEEEc-CHHHh---
Confidence 46667773 367777777765 45899999 88777776542 2 111121 32222
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...+|+|+-.-+-. .+.+..+.|+++|+++.+
T Consensus 197 ~~g~Dvv~d~~g~~-------~~~~~~~~l~~~G~~v~~ 228 (315)
T 3goh_A 197 TQKYFAIFDAVNSQ-------NAAALVPSLKANGHIICI 228 (315)
T ss_dssp CSCEEEEECC--------------TTGGGEEEEEEEEEE
T ss_pred CCCccEEEECCCch-------hHHHHHHHhcCCCEEEEE
Confidence 56799998654321 125567899999998876
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.98 Score=31.48 Aligned_cols=91 Identities=10% Similarity=0.076 Sum_probs=55.2
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--cccC-
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEEL- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~- 77 (131)
+||-+|+| .|..+..+++..+ ..+++++|.+++-++.+++. +.. ..+... ..++
T Consensus 196 ~VlV~GaG~vG~~a~q~a~~~G-----------a~~Vi~~~~~~~~~~~a~~l----Ga~-------~vi~~~~~~~~~~ 253 (378)
T 3uko_A 196 NVAIFGLGTVGLAVAEGAKTAG-----------ASRIIGIDIDSKKYETAKKF----GVN-------EFVNPKDHDKPIQ 253 (378)
T ss_dssp CEEEECCSHHHHHHHHHHHHHT-----------CSCEEEECSCTTHHHHHHTT----TCC-------EEECGGGCSSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCeEEEEcCCHHHHHHHHHc----CCc-------EEEccccCchhHH
Confidence 45667774 3666777777653 34899999999877766532 211 111111 0111
Q ss_pred ----CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEe
Q psy890 78 ----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 120 (131)
Q Consensus 78 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~ 120 (131)
....+.+|+|+-.-+- ...+....+.|+++ |+++++-
T Consensus 254 ~~i~~~~~gg~D~vid~~g~------~~~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 254 EVIVDLTDGGVDYSFECIGN------VSVMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp HHHHHHTTSCBSEEEECSCC------HHHHHHHHHTBCTTTCEEEECS
T ss_pred HHHHHhcCCCCCEEEECCCC------HHHHHHHHHHhhccCCEEEEEc
Confidence 0122379999875431 34578888999997 9988754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.38 E-value=0.56 Score=32.26 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=54.0
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-.|+ |.|..+..+++.. +.++++++.+++-.+.+++. +. . ..+..+ .+..
T Consensus 162 ~VlV~Gasg~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~~----ga------~-~v~~~~-~~~~~ 217 (342)
T 4eye_A 162 TVLVLGAAGGIGTAAIQIAKGM------------GAKVIAVVNRTAATEFVKSV----GA------D-IVLPLE-EGWAK 217 (342)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSGGGHHHHHHH----TC------S-EEEESS-TTHHH
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHhc----CC------c-EEecCc-hhHHH
Confidence 4566665 4566677777664 56899999988877766642 21 1 111111 1110
Q ss_pred -----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|+|+...+- ..+....+.|+++|+++++-
T Consensus 218 ~v~~~~~~~g~Dvvid~~g~-------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 218 AVREATGGAGVDMVVDPIGG-------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp HHHHHTTTSCEEEEEESCC---------CHHHHHHTEEEEEEEEEC-
T ss_pred HHHHHhCCCCceEEEECCch-------hHHHHHHHhhcCCCEEEEEE
Confidence 123469999876542 14677888999999998753
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=91.36 E-value=1 Score=27.04 Aligned_cols=94 Identities=11% Similarity=0.016 Sum_probs=54.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC-HHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN-RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
|+=+ |.|..+..+++.+.. .+.+++++|.+ ++..+...+..+. .+.++.+|..+..
T Consensus 6 vlI~--G~G~vG~~la~~L~~---------~g~~V~vid~~~~~~~~~~~~~~~~---------~~~~i~gd~~~~~~l~ 65 (153)
T 1id1_A 6 FIVC--GHSILAINTILQLNQ---------RGQNVTVISNLPEDDIKQLEQRLGD---------NADVIPGDSNDSSVLK 65 (153)
T ss_dssp EEEE--CCSHHHHHHHHHHHH---------TTCCEEEEECCCHHHHHHHHHHHCT---------TCEEEESCTTSHHHHH
T ss_pred EEEE--CCCHHHHHHHHHHHH---------CCCCEEEEECCChHHHHHHHHhhcC---------CCeEEEcCCCCHHHHH
Confidence 4444 458888888877642 25689999997 4444444333221 4667777765431
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..-+.+|+|++...- ......+....+.+.|...++..
T Consensus 66 ~a~i~~ad~vi~~~~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 66 KAGIDRCRAILALSDN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp HHTTTTCSEEEECSSC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred HcChhhCCEEEEecCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 113468888875421 12334455556666677776553
|
| >2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.33 E-value=0.15 Score=30.66 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHhhhccCCCCCCCceeEEecc-cc--cCCCCCCCeeEEEEccccc-ccc-CHHHHHHHHHHhccCCcEEE
Q psy890 43 NRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AE--ELPIESDSYSAYTIAFGIR-NVT-RIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 43 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~--~~~~~~~~~D~i~~~~~l~-~~~-~~~~~l~~~~~~L~p~G~l~ 117 (131)
.++.++.++...... .+ ..+...-.| +. ...++.+.||.|+....-. ... -+...+..+.+.|||||.|.
T Consensus 21 ~pe~le~~k~~~~~~--~~---~~~d~qmlDRLa~G~VsLp~stYD~V~~lt~~~~~~~~l~r~li~~l~~aLkpgG~L~ 95 (136)
T 2km1_A 21 TPELVENTKAQAASK--KV---KFVDQFLINKLNDGSITLENAKYETVHYLTPEAQTDIKFPKKLISVLADSLKPNGSLI 95 (136)
T ss_dssp SHHHHHHHHHHHHHT--TE---EEEEEEEHHHHHHTCCCCCSSSCCSEEEECCCSSCSCCCCHHHHHHHHTTCCTTCCEE
T ss_pred CHHHHHHHHHhhhcc--cc---chhhHHHHHHHhcCcccCCcccccEEEEecCCccchhhcCHHHHHHHHHHhCCCCEEE
Confidence 356666666555442 00 023333333 22 2246788999998754333 212 23788999999999999986
Q ss_pred E
Q psy890 118 C 118 (131)
Q Consensus 118 ~ 118 (131)
-
T Consensus 96 g 96 (136)
T 2km1_A 96 G 96 (136)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.07 E-value=0.46 Score=32.73 Aligned_cols=91 Identities=8% Similarity=0.007 Sum_probs=54.0
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-.|+ |.|.....+++.. +.++++++.+++..+.+++. +. ...+-..+..+..
T Consensus 172 ~vlV~Ga~ggiG~~~~~~a~~~------------Ga~V~~~~~~~~~~~~~~~~----g~------~~~~d~~~~~~~~~ 229 (347)
T 2hcy_A 172 WVAISGAAGGLGSLAVQYAKAM------------GYRVLGIDGGEGKEELFRSI----GG------EVFIDFTKEKDIVG 229 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT------------TCEEEEEECSTTHHHHHHHT----TC------CEEEETTTCSCHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC------------CCcEEEEcCCHHHHHHHHHc----CC------ceEEecCccHhHHH
Confidence 4677787 4556666666653 46899999888776665431 21 1111111111110
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+.+|+|+.+.+. ...+..+.+.|+++|+++.+-
T Consensus 230 ~~~~~~~~~~D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g 269 (347)
T 2hcy_A 230 AVLKATDGGAHGVINVSVS------EAAIEASTRYVRANGTTVLVG 269 (347)
T ss_dssp HHHHHHTSCEEEEEECSSC------HHHHHHHTTSEEEEEEEEECC
T ss_pred HHHHHhCCCCCEEEECCCc------HHHHHHHHHHHhcCCEEEEEe
Confidence 111269999876542 246788889999999988754
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=1.3 Score=31.67 Aligned_cols=93 Identities=9% Similarity=0.033 Sum_probs=58.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.|+=+| .|..+..+++.+.. .+..|+++|.+++.++.+++. .+.++.+|..+..
T Consensus 6 ~viIiG--~Gr~G~~va~~L~~---------~g~~vvvId~d~~~v~~~~~~------------g~~vi~GDat~~~~L~ 62 (413)
T 3l9w_A 6 RVIIAG--FGRFGQITGRLLLS---------SGVKMVVLDHDPDHIETLRKF------------GMKVFYGDATRMDLLE 62 (413)
T ss_dssp SEEEEC--CSHHHHHHHHHHHH---------TTCCEEEEECCHHHHHHHHHT------------TCCCEESCTTCHHHHH
T ss_pred eEEEEC--CCHHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHhC------------CCeEEEcCCCCHHHHH
Confidence 355555 57788888777642 257899999999888876531 3456677766532
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..-+.+|+|++...- ......+....+.+.|+..++..-
T Consensus 63 ~agi~~A~~viv~~~~---~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 63 SAGAAKAEVLINAIDD---PQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp HTTTTTCSEEEECCSS---HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred hcCCCccCEEEECCCC---hHHHHHHHHHHHHhCCCCeEEEEE
Confidence 223568888774321 122344556667778887776643
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.91 E-value=0.68 Score=32.36 Aligned_cols=91 Identities=16% Similarity=0.110 Sum_probs=53.8
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec------cc
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA------NA 74 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~ 74 (131)
+||-+|+| .|..+..+++..+ ..++++++.+++-++.+++ .+. . ..+.. ++
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~~~~----lGa------~-~vi~~~~~~~~~~ 255 (380)
T 1vj0_A 198 TVVIQGAGPLGLFGVVIARSLG-----------AENVIVIAGSPNRLKLAEE----IGA------D-LTLNRRETSVEER 255 (380)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------BSEEEEEESCHHHHHHHHH----TTC------S-EEEETTTSCHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHcC-----------CceEEEEcCCHHHHHHHHH----cCC------c-EEEeccccCcchH
Confidence 46667743 3566666666632 2589999999987777653 221 1 11111 11
Q ss_pred c-cC-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 75 E-EL-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~-~~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .. . .....+|+|+-.-+- ...+....+.|+++|+++.+-
T Consensus 256 ~~~v~~~~~g~g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G 298 (380)
T 1vj0_A 256 RKAIMDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAG 298 (380)
T ss_dssp HHHHHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHHhCCCCCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 1 01 0 122369999875432 124677889999999988753
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.86 E-value=1.9 Score=29.54 Aligned_cols=90 Identities=9% Similarity=-0.028 Sum_probs=54.6
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE- 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~- 76 (131)
+||-.|+ |.|.....+++.. +.++++++.+++.++.+++. +. ...+-..+ ..+
T Consensus 169 ~vlV~Gasg~iG~~~~~~a~~~------------G~~Vi~~~~~~~~~~~~~~~----ga------~~~~d~~~~~~~~~ 226 (343)
T 2eih_A 169 DVLVMAAGSGVSVAAIQIAKLF------------GARVIATAGSEDKLRRAKAL----GA------DETVNYTHPDWPKE 226 (343)
T ss_dssp EEEECSTTSTTHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHH----TC------SEEEETTSTTHHHH
T ss_pred EEEEECCCchHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHhc----CC------CEEEcCCcccHHHH
Confidence 4677776 4566666666653 46899999998887777532 21 11111111 000
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. . .....+|+|+...+ . ..+..+.+.|+++|+++.+-
T Consensus 227 ~~~~~~~~~~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 227 VRRLTGGKGADKVVDHTG-A------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp HHHHTTTTCEEEEEESSC-S------SSHHHHHHHEEEEEEEEESS
T ss_pred HHHHhCCCCceEEEECCC-H------HHHHHHHHhhccCCEEEEEe
Confidence 0 0 12347999988765 2 23567788899999987753
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.75 E-value=0.3 Score=33.57 Aligned_cols=87 Identities=16% Similarity=0.238 Sum_probs=53.6
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+||-+|+| .|..+..+++.. +.++++++.+++-++.+++ + +. . ..+ |..+..
T Consensus 167 ~VlV~GaG~vG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~-l---Ga------~-~~~--d~~~~~~~ 221 (339)
T 1rjw_A 167 WVAIYGIGGLGHVAVQYAKAM------------GLNVVAVDIGDEKLELAKE-L---GA------D-LVV--NPLKEDAA 221 (339)
T ss_dssp EEEEECCSTTHHHHHHHHHHT------------TCEEEEECSCHHHHHHHHH-T---TC------S-EEE--CTTTSCHH
T ss_pred EEEEECCCHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHH-C---CC------C-EEe--cCCCccHH
Confidence 46777774 355566666653 4689999999987777653 1 21 1 111 211100
Q ss_pred -----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. ..+|+|+...+. ...+.+..+.|+++|+++.+-
T Consensus 222 ~~~~~~~-~~~d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 222 KFMKEKV-GGVHAAVVTAVS------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp HHHHHHH-SSEEEEEESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHHh-CCCCEEEECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence 11 469999875542 245678889999999988753
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=90.75 E-value=1.1 Score=31.19 Aligned_cols=92 Identities=12% Similarity=0.037 Sum_probs=53.8
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec----cccc
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA----NAEE 76 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~ 76 (131)
+||-+|+| .|..+..+++..+ ..+++++|.+++-++.+++. +.. .+ +-.. ++.+
T Consensus 198 ~VlV~GaG~vG~~aiqlak~~G-----------a~~Vi~~~~~~~~~~~a~~l----Ga~-----~v-i~~~~~~~~~~~ 256 (376)
T 1e3i_A 198 TCAVFGLGCVGLSAIIGCKIAG-----------ASRIIAIDINGEKFPKAKAL----GAT-----DC-LNPRELDKPVQD 256 (376)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHHT----TCS-----EE-ECGGGCSSCHHH
T ss_pred EEEEECCCHHHHHHHHHHHHcC-----------CCeEEEEcCCHHHHHHHHHh----CCc-----EE-EccccccchHHH
Confidence 45667764 3566666776642 33799999998877776532 211 11 1111 1100
Q ss_pred -C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEe
Q psy890 77 -L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLE 120 (131)
Q Consensus 77 -~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~ 120 (131)
. ....+.+|+|+-.-+- ...+....+.|+++ |+++++-
T Consensus 257 ~v~~~~~~g~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 257 VITELTAGGVDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp HHHHHHTSCBSEEEESSCC------HHHHHHHHHTBCTTTCEEEECC
T ss_pred HHHHHhCCCccEEEECCCC------HHHHHHHHHHhhcCCCEEEEEC
Confidence 0 0112369999865432 34578888999999 9988754
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.71 E-value=1.2 Score=30.83 Aligned_cols=89 Identities=11% Similarity=0.021 Sum_probs=52.5
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
+||-.|+ |.|.....+++.. +.++++++.+++..+.+++. +. .. .+..+-.+.
T Consensus 173 ~vlV~GasggiG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~~----ga------~~-~~d~~~~~~~~ 229 (351)
T 1yb5_A 173 SVLVHGASGGVGLAACQIARAY------------GLKILGTAGTEEGQKIVLQN----GA------HE-VFNHREVNYID 229 (351)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHT----TC------SE-EEETTSTTHHH
T ss_pred EEEEECCCChHHHHHHHHHHHC------------CCEEEEEeCChhHHHHHHHc----CC------CE-EEeCCCchHHH
Confidence 3566665 4455555565553 56899999998777755432 21 11 111111110
Q ss_pred --C--CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 --P--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 --~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .....+|+++.+.+- ..+.+..+.|+++|+++++-
T Consensus 230 ~~~~~~~~~~~D~vi~~~G~-------~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 230 KIKKYVGEKGIDIIIEMLAN-------VNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp HHHHHHCTTCEEEEEESCHH-------HHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHcCCCCcEEEEECCCh-------HHHHHHHHhccCCCEEEEEe
Confidence 0 122469999876542 34677889999999988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.87 Score=31.48 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=51.1
Q ss_pred ceeeeecc-cchhh-HHHh-hhhcCCCCCCCCCCCCCe-EEEEeCCHH---HHHHHHHHhhhccCCCCCCCceeEEeccc
Q psy890 2 YILFYLVF-PGDIA-FRFL-NYVDKLPPNTLSEHCAPH-VTVADINRA---MLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G-~G~~~-~~l~-~~~~~~~~~~~~~~~~~~-~~~~D~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
+||-+|+| .|..+ ..++ +.. +.+ +++++.+++ -.+.+++. +.. .+.+...+.
T Consensus 175 ~VlV~GaG~vG~~a~iqla~k~~------------Ga~~Vi~~~~~~~~~~~~~~~~~l----Ga~-----~v~~~~~~~ 233 (357)
T 2b5w_A 175 SAFVLGNGSLGLLTLAMLKVDDK------------GYENLYCLGRRDRPDPTIDIIEEL----DAT-----YVDSRQTPV 233 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHCTT------------CCCEEEEEECCCSSCHHHHHHHHT----TCE-----EEETTTSCG
T ss_pred EEEEECCCHHHHHHHHHHHHHHc------------CCcEEEEEeCCcccHHHHHHHHHc----CCc-----ccCCCccCH
Confidence 46677763 34555 5566 543 344 999998876 66666531 210 110000011
Q ss_pred ccC-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 75 EEL-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~~~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+. .. .+.+|+|+-.-+- ...+.++.+.|+++|+++.+-
T Consensus 234 ~~i~~~-~gg~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~g 273 (357)
T 2b5w_A 234 EDVPDV-YEQMDFIYEATGF------PKHAIQSVQALAPNGVGALLG 273 (357)
T ss_dssp GGHHHH-SCCEEEEEECSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred HHHHHh-CCCCCEEEECCCC------hHHHHHHHHHHhcCCEEEEEe
Confidence 110 01 1369999865431 235778889999999988754
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.18 Score=35.28 Aligned_cols=77 Identities=16% Similarity=0.098 Sum_probs=40.8
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG 113 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~ 113 (131)
+.+++++|.+++-.+.+.+.... .+.....+...+...-..+|+|+..-.......+.-......+.|+|+
T Consensus 190 Ga~V~v~dr~~~r~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g 260 (361)
T 1pjc_A 190 GAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTG 260 (361)
T ss_dssp TCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTT
T ss_pred CCEEEEEeCCHHHHHHHHHhhCc---------eeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCC
Confidence 45899999999877777654432 221111111111000125899987654432111111123456778999
Q ss_pred cEEEEE
Q psy890 114 GRFLCL 119 (131)
Q Consensus 114 G~l~~~ 119 (131)
|+++-+
T Consensus 261 ~~ivdv 266 (361)
T 1pjc_A 261 SVIVDV 266 (361)
T ss_dssp CEEEET
T ss_pred CEEEEE
Confidence 987654
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=90.49 E-value=1.4 Score=29.57 Aligned_cols=103 Identities=14% Similarity=0.105 Sum_probs=61.2
Q ss_pred eeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.|+++ ..+...+++.+-. .+.+|+.++.++...+...+.....+ .+.++..|+.+..
T Consensus 33 vlVTGasg~~GIG~~ia~~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dv~d~~~v~ 96 (296)
T 3k31_A 33 GVIIGVANDKSLAWGIAKAVCA---------QGAEVALTYLSETFKKRVDPLAESLG-------VKLTVPCDVSDAESVD 96 (296)
T ss_dssp EEEECCCSTTSHHHHHHHHHHH---------TTCEEEEEESSGGGHHHHHHHHHHHT-------CCEEEECCTTCHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHH---------CCCEEEEEeCChHHHHHHHHHHHhcC-------CeEEEEcCCCCHHHHH
Confidence 45555543 2455555555431 36789999998765555555444443 5677888877642
Q ss_pred --CC-----CCCeeEEEEccccccc----------c--C-----------HHHHHHHHHHhccCCcEEEEEec
Q psy890 79 --IE-----SDSYSAYTIAFGIRNV----------T--R-----------IDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 --~~-----~~~~D~i~~~~~l~~~----------~--~-----------~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+. -+.+|+++.+.+.... + + .....+.+.+.|+.+|.++.+..
T Consensus 97 ~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 97 NMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 11 1468999988765421 0 1 12344556677777888887653
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=90.47 E-value=0.31 Score=33.92 Aligned_cols=92 Identities=13% Similarity=0.140 Sum_probs=50.4
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+||-+|+| .|..+..+++.. +.++++++.+++-.+.+++.+ +. ...+-..+.......
T Consensus 190 ~VlV~GaG~vG~~~~q~a~~~------------Ga~Vi~~~~~~~~~~~~~~~l---Ga------~~v~~~~~~~~~~~~ 248 (366)
T 1yqd_A 190 HIGIVGLGGLGHVAVKFAKAF------------GSKVTVISTSPSKKEEALKNF---GA------DSFLVSRDQEQMQAA 248 (366)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCGGGHHHHHHTS---CC------SEEEETTCHHHHHHT
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHhc---CC------ceEEeccCHHHHHHh
Confidence 35556653 245555666553 468999999887666655332 21 111111111111101
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+.+|+|+...+... .+....+.|+++|+++.+-
T Consensus 249 ~~~~D~vid~~g~~~------~~~~~~~~l~~~G~iv~~g 282 (366)
T 1yqd_A 249 AGTLDGIIDTVSAVH------PLLPLFGLLKSHGKLILVG 282 (366)
T ss_dssp TTCEEEEEECCSSCC------CSHHHHHHEEEEEEEEECC
T ss_pred hCCCCEEEECCCcHH------HHHHHHHHHhcCCEEEEEc
Confidence 136999987654321 2345677889999988753
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.39 E-value=0.18 Score=35.36 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=49.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+=+|+ |.....+++.+.. .+.+|+++|.+++..+.+.+.... .+.....+...+...-
T Consensus 168 ~V~ViGa--G~iG~~~a~~l~~---------~Ga~V~~~d~~~~~~~~~~~~~g~---------~~~~~~~~~~~l~~~~ 227 (369)
T 2eez_A 168 SVVILGG--GTVGTNAAKIALG---------MGAQVTILDVNHKRLQYLDDVFGG---------RVITLTATEANIKKSV 227 (369)
T ss_dssp EEEEECC--SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHTTT---------SEEEEECCHHHHHHHH
T ss_pred EEEEECC--CHHHHHHHHHHHh---------CCCEEEEEECCHHHHHHHHHhcCc---------eEEEecCCHHHHHHHH
Confidence 4556666 5555555544321 256899999998776665543311 2211111111111001
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+|+|+..-.......+.-...+..+.|+++|+++.+
T Consensus 228 ~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v 265 (369)
T 2eez_A 228 QHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDV 265 (369)
T ss_dssp HHCSEEEECCC-------CCSCHHHHTTSCTTCEEEEC
T ss_pred hCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEE
Confidence 24799987654432111111235567788999987754
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.37 E-value=2.8 Score=27.89 Aligned_cols=77 Identities=8% Similarity=0.030 Sum_probs=50.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~--- 78 (131)
+|=.|+ +|.+...+++.+-. .+.+|+.++.+++-.+.+.+.+..... .++.++..|+.+. .
T Consensus 15 vlITGa-s~GIG~~~a~~L~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~~v~ 79 (311)
T 3o26_A 15 AVVTGG-NKGIGFEICKQLSS---------NGIMVVLTCRDVTKGHEAVEKLKNSNH-----ENVVFHQLDVTDPIATMS 79 (311)
T ss_dssp EEESSC-SSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHTTTC-----CSEEEEECCTTSCHHHHH
T ss_pred EEEecC-CchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEEccCCCcHHHHH
Confidence 444444 45566666665531 267899999999887777666655432 1788999998764 2
Q ss_pred -----C--CCCCeeEEEEccccc
Q psy890 79 -----I--ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -----~--~~~~~D~i~~~~~l~ 94 (131)
. ..+.+|+++.+.+..
T Consensus 80 ~~~~~~~~~~g~iD~lv~nAg~~ 102 (311)
T 3o26_A 80 SLADFIKTHFGKLDILVNNAGVA 102 (311)
T ss_dssp HHHHHHHHHHSSCCEEEECCCCC
T ss_pred HHHHHHHHhCCCCCEEEECCccc
Confidence 0 014689999987754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=90.13 E-value=2.7 Score=27.46 Aligned_cols=99 Identities=10% Similarity=0.111 Sum_probs=61.2
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C--
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I-- 79 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~-- 79 (131)
+|=.| |+|.+...+++.+-. .+.+|+.++.+++.++...+... . ++.++..|+.+.. .
T Consensus 11 ~lVTG-as~gIG~a~a~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~--~-------~~~~~~~Dv~~~~~v~~ 71 (255)
T 4eso_A 11 AIVIG-GTHGMGLATVRRLVE---------GGAEVLLTGRNESNIARIREEFG--P-------RVHALRSDIADLNEIAV 71 (255)
T ss_dssp EEEET-CSSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHG--G-------GEEEEECCTTCHHHHHH
T ss_pred EEEEC-CCCHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHhC--C-------cceEEEccCCCHHHHHH
Confidence 34444 445566666665531 36789999999887776665542 1 6888888877642 0
Q ss_pred -------CCCCeeEEEEcccccccc--------C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 80 -------ESDSYSAYTIAFGIRNVT--------R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 -------~~~~~D~i~~~~~l~~~~--------~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+..|+++.+.+..... + .....+.+.+.|+++|.++.+.
T Consensus 72 ~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 72 LGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp HHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 114689999876653221 1 1233455666777788887754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=1.6 Score=30.16 Aligned_cols=90 Identities=13% Similarity=0.090 Sum_probs=52.2
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc---c
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE---E 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 76 (131)
+||-.|+ |.|.....+++.. +.++++++.+++.++.+++. +. ...+-..+.. .
T Consensus 165 ~vlV~Ga~ggiG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~~----g~------~~~~~~~~~~~~~~ 222 (354)
T 2j8z_A 165 YVLIHAGLSGVGTAAIQLTRMA------------GAIPLVTAGSQKKLQMAEKL----GA------AAGFNYKKEDFSEA 222 (354)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHH----TC------SEEEETTTSCHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHHc----CC------cEEEecCChHHHHH
Confidence 3566663 4455555555553 56899999998877776432 11 1111111100 0
Q ss_pred C-C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. . .....+|+++.+.+-. .+....+.|+++|+++++-
T Consensus 223 ~~~~~~~~~~d~vi~~~G~~-------~~~~~~~~l~~~G~iv~~G 261 (354)
T 2j8z_A 223 TLKFTKGAGVNLILDCIGGS-------YWEKNVNCLALDGRWVLYG 261 (354)
T ss_dssp HHHHTTTSCEEEEEESSCGG-------GHHHHHHHEEEEEEEEECC
T ss_pred HHHHhcCCCceEEEECCCch-------HHHHHHHhccCCCEEEEEe
Confidence 0 0 1234699998765531 3567788999999988754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.02 E-value=1.2 Score=30.44 Aligned_cols=90 Identities=11% Similarity=0.096 Sum_probs=52.9
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc---c
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE---E 76 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~ 76 (131)
++|-.|+ |.|.....+++.. +.++++++.+++.++.+++. +. ...+-..+.. .
T Consensus 148 ~vlV~Ga~ggiG~~~~~~a~~~------------G~~Vi~~~~~~~~~~~~~~~----g~------~~~~d~~~~~~~~~ 205 (333)
T 1wly_A 148 YVLIHAAAGGMGHIMVPWARHL------------GATVIGTVSTEEKAETARKL----GC------HHTINYSTQDFAEV 205 (333)
T ss_dssp EEEETTTTSTTHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHH----TC------SEEEETTTSCHHHH
T ss_pred EEEEECCccHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHc----CC------CEEEECCCHHHHHH
Confidence 3566664 4555555555553 46899999998777766542 21 1111111100 0
Q ss_pred CC--CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 LP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. .....+|+++.+.+- ..+..+.+.|+++|+++.+-
T Consensus 206 i~~~~~~~~~d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g 244 (333)
T 1wly_A 206 VREITGGKGVDVVYDSIGK-------DTLQKSLDCLRPRGMCAAYG 244 (333)
T ss_dssp HHHHHTTCCEEEEEECSCT-------TTHHHHHHTEEEEEEEEECC
T ss_pred HHHHhCCCCCeEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 00 112469999876542 34677889999999987754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=89.99 E-value=0.9 Score=31.25 Aligned_cols=92 Identities=13% Similarity=0.138 Sum_probs=54.8
Q ss_pred ceeeeecc--cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc---
Q psy890 2 YILFYLVF--PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--- 76 (131)
Q Consensus 2 ~iLdig~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--- 76 (131)
++|-.|+| .|.....+++... +.+++++|.+++..+.+++. +. ...+-..+...
T Consensus 173 ~vlV~Gagg~iG~~~~~~a~~~~-----------Ga~Vi~~~~~~~~~~~~~~~----g~------~~~~~~~~~~~~~~ 231 (347)
T 1jvb_A 173 TLLVVGAGGGLGTMAVQIAKAVS-----------GATIIGVDVREEAVEAAKRA----GA------DYVINASMQDPLAE 231 (347)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHT-----------CCEEEEEESSHHHHHHHHHH----TC------SEEEETTTSCHHHH
T ss_pred EEEEECCCccHHHHHHHHHHHcC-----------CCeEEEEcCCHHHHHHHHHh----CC------CEEecCCCccHHHH
Confidence 46777776 4455666666541 46899999999877776532 21 11111111110
Q ss_pred C-CCCC-CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 77 L-PIES-DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 ~-~~~~-~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .... +.+|+++...+- ...+.+..+.|+++|+++.+-
T Consensus 232 ~~~~~~~~~~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g 271 (347)
T 1jvb_A 232 IRRITESKGVDAVIDLNNS------EKTLSVYPKALAKQGKYVMVG 271 (347)
T ss_dssp HHHHTTTSCEEEEEESCCC------HHHHTTGGGGEEEEEEEEECC
T ss_pred HHHHhcCCCceEEEECCCC------HHHHHHHHHHHhcCCEEEEEC
Confidence 0 0111 479999876542 235677889999999988753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.21 Score=34.56 Aligned_cols=89 Identities=10% Similarity=0.019 Sum_probs=53.2
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
+||-.|+ |.|..+..+++.. +.++++++.+++-++.+++. +. .. .+..+-.+.
T Consensus 170 ~VlV~Gg~g~iG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga------~~-~~~~~~~~~~~ 226 (353)
T 4dup_A 170 SVLIHGGTSGIGTTAIQLARAF------------GAEVYATAGSTGKCEACERL----GA------KR-GINYRSEDFAA 226 (353)
T ss_dssp EEEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHH----TC------SE-EEETTTSCHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHhc----CC------CE-EEeCCchHHHH
Confidence 3555532 3456666666653 56899999999887777642 21 11 111111110
Q ss_pred ---CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 ---PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ---~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+...+-. .+....+.|+++|+++.+-
T Consensus 227 ~~~~~~~~g~Dvvid~~g~~-------~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 227 VIKAETGQGVDIILDMIGAA-------YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp HHHHHHSSCEEEEEESCCGG-------GHHHHHHTEEEEEEEEECC
T ss_pred HHHHHhCCCceEEEECCCHH-------HHHHHHHHhccCCEEEEEE
Confidence 01135699998865521 4677788999999988754
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=89.43 E-value=0.92 Score=32.82 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=45.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+|+=+|| |.....+++.+.. .+-.++.+|.+++.++.+.+.+ .+..+.+|..+..
T Consensus 4 M~iiI~G~--G~vG~~la~~L~~---------~~~~v~vId~d~~~~~~~~~~~-----------~~~~i~Gd~~~~~~L 61 (461)
T 4g65_A 4 MKIIILGA--GQVGGTLAENLVG---------ENNDITIVDKDGDRLRELQDKY-----------DLRVVNGHASHPDVL 61 (461)
T ss_dssp EEEEEECC--SHHHHHHHHHTCS---------TTEEEEEEESCHHHHHHHHHHS-----------SCEEEESCTTCHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHH---------CCCCEEEEECCHHHHHHHHHhc-----------CcEEEEEcCCCHHHH
Confidence 55665555 6788888888742 3567999999999888776554 4566777766542
Q ss_pred --CCCCCeeEEEE
Q psy890 79 --IESDSYSAYTI 89 (131)
Q Consensus 79 --~~~~~~D~i~~ 89 (131)
-.-+..|++++
T Consensus 62 ~~Agi~~ad~~ia 74 (461)
T 4g65_A 62 HEAGAQDADMLVA 74 (461)
T ss_dssp HHHTTTTCSEEEE
T ss_pred HhcCCCcCCEEEE
Confidence 11245777765
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=89.36 E-value=1.8 Score=29.98 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=50.8
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCH---HHHHHHHHHhhhccCCCCCCCceeEEecc-ccc
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINR---AMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEE 76 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~ 76 (131)
+||-+|+| .|.....+++.. +.++++++.++ +-.+.+++. + ...+..+ +.+
T Consensus 183 ~VlV~GaG~vG~~~~q~a~~~------------Ga~Vi~~~~~~~~~~~~~~~~~~----g--------a~~v~~~~~~~ 238 (366)
T 2cdc_A 183 KVLVVGTGPIGVLFTLLFRTY------------GLEVWMANRREPTEVEQTVIEET----K--------TNYYNSSNGYD 238 (366)
T ss_dssp EEEEESCHHHHHHHHHHHHHH------------TCEEEEEESSCCCHHHHHHHHHH----T--------CEEEECTTCSH
T ss_pred EEEEECCCHHHHHHHHHHHhC------------CCEEEEEeCCccchHHHHHHHHh----C--------CceechHHHHH
Confidence 45666762 355556666654 45899999887 666555432 2 1111111 000
Q ss_pred -CCCCCCCeeEEEEccccccccCHHHHH-HHHHHhccCCcEEEEEe
Q psy890 77 -LPIESDSYSAYTIAFGIRNVTRIDKAL-SEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 77 -~~~~~~~~D~i~~~~~l~~~~~~~~~l-~~~~~~L~p~G~l~~~~ 120 (131)
.......+|+|+...+.. ..+ ....+.|+++|+++++-
T Consensus 239 ~~~~~~~~~d~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g 278 (366)
T 2cdc_A 239 KLKDSVGKFDVIIDATGAD------VNILGNVIPLLGRNGVLGLFG 278 (366)
T ss_dssp HHHHHHCCEEEEEECCCCC------THHHHHHGGGEEEEEEEEECS
T ss_pred HHHHhCCCCCEEEECCCCh------HHHHHHHHHHHhcCCEEEEEe
Confidence 000014699998765421 134 77889999999988754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=0.46 Score=32.92 Aligned_cols=92 Identities=14% Similarity=0.102 Sum_probs=51.1
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+||-+|+| .|..+..+++.. +.++++++.+++-++.+++.+ +.. .+ +-..+.......
T Consensus 183 ~VlV~GaG~vG~~a~qlak~~------------Ga~Vi~~~~~~~~~~~~~~~l---Ga~-----~v-i~~~~~~~~~~~ 241 (357)
T 2cf5_A 183 RGGILGLGGVGHMGVKIAKAM------------GHHVTVISSSNKKREEALQDL---GAD-----DY-VIGSDQAKMSEL 241 (357)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCEEEEEESSTTHHHHHHTTS---CCS-----CE-EETTCHHHHHHS
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCeEEEEeCChHHHHHHHHHc---CCc-----ee-eccccHHHHHHh
Confidence 35556653 355566666664 458999999887666655332 211 11 111111111001
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+.+|+|+-.-+-. ..+....+.|+++|+++.+-
T Consensus 242 ~~g~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G 275 (357)
T 2cf5_A 242 ADSLDYVIDTVPVH------HALEPYLSLLKLDGKLILMG 275 (357)
T ss_dssp TTTEEEEEECCCSC------CCSHHHHTTEEEEEEEEECS
T ss_pred cCCCCEEEECCCCh------HHHHHHHHHhccCCEEEEeC
Confidence 13699998754421 12455678899999988753
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.25 Score=34.73 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=50.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|+=+|+ |.....+++.+.. .+.+|+++|.+++-++.+.+.... .+.....+...+...-
T Consensus 170 ~V~ViG~--G~iG~~~a~~a~~---------~Ga~V~~~d~~~~~l~~~~~~~g~---------~~~~~~~~~~~l~~~l 229 (377)
T 2vhw_A 170 DVVVIGA--GTAGYNAARIANG---------MGATVTVLDINIDKLRQLDAEFCG---------RIHTRYSSAYELEGAV 229 (377)
T ss_dssp EEEEECC--SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHTTT---------SSEEEECCHHHHHHHH
T ss_pred EEEEECC--CHHHHHHHHHHHh---------CCCEEEEEeCCHHHHHHHHHhcCC---------eeEeccCCHHHHHHHH
Confidence 4566666 5565555544321 246899999999877766543321 1111111111110001
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+|+..-.......+.-+..+..+.|+|||+++-+-
T Consensus 230 ~~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 230 KRADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp HHCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred cCCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 247999874432211111111345667889999887543
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=88.66 E-value=0.19 Score=34.86 Aligned_cols=92 Identities=9% Similarity=0.041 Sum_probs=53.3
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--C
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--P 78 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~ 78 (131)
+||-+|+| .|..+..+++.. +.++++++.+++-++.+++. +.. .+ +-..+..+. .
T Consensus 182 ~VlV~GaG~vG~~~~qlak~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga~-----~v-~~~~~~~~~~~~ 239 (360)
T 1piw_A 182 KVGIVGLGGIGSMGTLISKAM------------GAETYVISRSSRKREDAMKM----GAD-----HY-IATLEEGDWGEK 239 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCEEEEEESSSTTHHHHHHH----TCS-----EE-EEGGGTSCHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC------------CCEEEEEcCCHHHHHHHHHc----CCC-----EE-EcCcCchHHHHH
Confidence 46777764 366677777764 45799999988777776542 211 11 111111011 0
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.. +.+|+|+....-.. ...+..+.+.|+++|+++.+-
T Consensus 240 ~~-~~~D~vid~~g~~~----~~~~~~~~~~l~~~G~iv~~g 276 (360)
T 1piw_A 240 YF-DTFDLIVVCASSLT----DIDFNIMPKAMKVGGRIVSIS 276 (360)
T ss_dssp SC-SCEEEEEECCSCST----TCCTTTGGGGEEEEEEEEECC
T ss_pred hh-cCCCEEEECCCCCc----HHHHHHHHHHhcCCCEEEEec
Confidence 11 47999987654300 112455678899999987653
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=2.1 Score=27.81 Aligned_cols=103 Identities=15% Similarity=0.133 Sum_probs=61.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
||=. .|+|.+...+++.+... .+.++++++.+.+..+...+.+...+ .++.++..|+.+..
T Consensus 7 vlIT-GasggIG~~~a~~L~~~--------~g~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dl~~~~~~~~ 71 (276)
T 1wma_A 7 ALVT-GGNKGIGLAIVRDLCRL--------FSGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRA 71 (276)
T ss_dssp EEES-SCSSHHHHHHHHHHHHH--------SSSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHH
T ss_pred EEEe-CCCcHHHHHHHHHHHHh--------cCCeEEEEeCChHHHHHHHHHHHhcC------CeeEEEECCCCCHHHHHH
Confidence 4433 45666777777765410 15689999998877766666555432 16788888877632
Q ss_pred -CC-----CCCeeEEEEccccccc--------cC-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -IE-----SDSYSAYTIAFGIRNV--------TR-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l~~~--------~~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+. .+.+|+++.+.+.... .+ ....++.+.+.++++|+++++.
T Consensus 72 ~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 72 LRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp HHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 10 1368999987654321 11 1234455566666678877653
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.38 E-value=2.4 Score=24.49 Aligned_cols=92 Identities=10% Similarity=0.222 Sum_probs=50.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+|+=+|+ |..+..+++.+.. .+.+++++|.+++.++...+.. .+.++..|..+..
T Consensus 5 m~i~IiG~--G~iG~~~a~~L~~---------~g~~v~~~d~~~~~~~~~~~~~-----------~~~~~~~d~~~~~~l 62 (140)
T 1lss_A 5 MYIIIAGI--GRVGYTLAKSLSE---------KGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTL 62 (140)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHh---------CCCeEEEEECCHHHHHHHHHhc-----------CcEEEEcCCCCHHHH
Confidence 45666655 7777777776541 2568999999987665544321 2334444433211
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.....+|+|+....-. .....+..+.+.+.++ .+++
T Consensus 63 ~~~~~~~~d~vi~~~~~~---~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 63 EDAGIEDADMYIAVTGKE---EVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp HHTTTTTCSEEEECCSCH---HHHHHHHHHHHHTTCC-CEEE
T ss_pred HHcCcccCCEEEEeeCCc---hHHHHHHHHHHHcCCC-EEEE
Confidence 1124689988763221 2223445556667775 4443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=88.01 E-value=4.1 Score=26.74 Aligned_cols=70 Identities=13% Similarity=-0.046 Sum_probs=49.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+||=.| + |.+...+++.+.+ .+.+|++++.++.-...... . .++++..|+.++.
T Consensus 6 ~~ilVtG-a-G~iG~~l~~~L~~---------~g~~V~~~~r~~~~~~~~~~-----~-------~~~~~~~D~~d~~-- 60 (286)
T 3ius_A 6 GTLLSFG-H-GYTARVLSRALAP---------QGWRIIGTSRNPDQMEAIRA-----S-------GAEPLLWPGEEPS-- 60 (286)
T ss_dssp CEEEEET-C-CHHHHHHHHHHGG---------GTCEEEEEESCGGGHHHHHH-----T-------TEEEEESSSSCCC--
T ss_pred CcEEEEC-C-cHHHHHHHHHHHH---------CCCEEEEEEcChhhhhhHhh-----C-------CCeEEEecccccc--
Confidence 4688888 4 8998888888752 25689999988754433221 1 6888889988765
Q ss_pred CCCeeEEEEcccccc
Q psy890 81 SDSYSAYTIAFGIRN 95 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~ 95 (131)
...+|.|+.......
T Consensus 61 ~~~~d~vi~~a~~~~ 75 (286)
T 3ius_A 61 LDGVTHLLISTAPDS 75 (286)
T ss_dssp CTTCCEEEECCCCBT
T ss_pred cCCCCEEEECCCccc
Confidence 467899988665543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=87.65 E-value=3.4 Score=25.39 Aligned_cols=92 Identities=10% Similarity=0.051 Sum_probs=50.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCC-CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHC-APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+|+-+| .|..+..+++.+.. . +.+|+++|.+++.++.+++ . .+..+.+|..+.
T Consensus 41 ~v~IiG--~G~~G~~~a~~L~~---------~~g~~V~vid~~~~~~~~~~~----~--------g~~~~~gd~~~~~~l 97 (183)
T 3c85_A 41 QVLILG--MGRIGTGAYDELRA---------RYGKISLGIEIREEAAQQHRS----E--------GRNVISGDATDPDFW 97 (183)
T ss_dssp SEEEEC--CSHHHHHHHHHHHH---------HHCSCEEEEESCHHHHHHHHH----T--------TCCEEECCTTCHHHH
T ss_pred cEEEEC--CCHHHHHHHHHHHh---------ccCCeEEEEECCHHHHHHHHH----C--------CCCEEEcCCCCHHHH
Confidence 455555 46777777766541 2 4579999999977666542 1 233444454321
Q ss_pred -CC-CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 -PI-ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 -~~-~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.. .-..+|+|+....- ......+....+.+.|++.++..
T Consensus 98 ~~~~~~~~ad~vi~~~~~---~~~~~~~~~~~~~~~~~~~ii~~ 138 (183)
T 3c85_A 98 ERILDTGHVKLVLLAMPH---HQGNQTALEQLQRRNYKGQIAAI 138 (183)
T ss_dssp HTBCSCCCCCEEEECCSS---HHHHHHHHHHHHHTTCCSEEEEE
T ss_pred HhccCCCCCCEEEEeCCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 11 23468988874321 11122233445566677777654
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=87.56 E-value=4.3 Score=26.52 Aligned_cols=81 Identities=12% Similarity=0.080 Sum_probs=48.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.| |+|.+...+++.+.. .+.+|++++.+++..+...+.+...... .++.++..|+.+..
T Consensus 10 vlVTG-as~gIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~~----~~~~~~~~D~~~~~~v~~ 75 (267)
T 2gdz_A 10 ALVTG-AAQGIGRAFAEALLL---------KGAKVALVDWNLEAGVQCKAALHEQFEP----QKTLFIQCDVADQQQLRD 75 (267)
T ss_dssp EEEET-TTSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHTTTSCG----GGEEEEECCTTSHHHHHH
T ss_pred EEEEC-CCCcHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhhcCC----CceEEEecCCCCHHHHHH
Confidence 34444 556666666666531 2678999999887666555444331101 16788888876532
Q ss_pred -CC-----CCCeeEEEEcccccccc
Q psy890 79 -IE-----SDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l~~~~ 97 (131)
+. .+.+|+++.+.+.....
T Consensus 76 ~~~~~~~~~g~id~lv~~Ag~~~~~ 100 (267)
T 2gdz_A 76 TFRKVVDHFGRLDILVNNAGVNNEK 100 (267)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCSS
T ss_pred HHHHHHHHcCCCCEEEECCCCCChh
Confidence 10 13589999887754333
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=87.52 E-value=5 Score=27.21 Aligned_cols=78 Identities=10% Similarity=0.039 Sum_probs=51.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+ +|.+...+++.+.. .+.+|++++.+++..+...+.+...+... ++.++..|+.+..
T Consensus 11 vlVTGa-s~gIG~~la~~l~~---------~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~----~~~~~~~Dl~~~~~v~~ 76 (319)
T 3ioy_A 11 AFVTGG-ANGVGIGLVRQLLN---------QGCKVAIADIRQDSIDKALATLEAEGSGP----EVMGVQLDVASREGFKM 76 (319)
T ss_dssp EEEETT-TSTHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHHTCGG----GEEEEECCTTCHHHHHH
T ss_pred EEEcCC-chHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcCCCC----eEEEEECCCCCHHHHHH
Confidence 444444 45566666666531 36789999999988887777665543221 6888888877642
Q ss_pred -C-----CCCCeeEEEEccccc
Q psy890 79 -I-----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~ 94 (131)
+ ..+.+|+++.+.+..
T Consensus 77 ~~~~~~~~~g~id~lv~nAg~~ 98 (319)
T 3ioy_A 77 AADEVEARFGPVSILCNNAGVN 98 (319)
T ss_dssp HHHHHHHHTCCEEEEEECCCCC
T ss_pred HHHHHHHhCCCCCEEEECCCcC
Confidence 1 124689999987653
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=87.52 E-value=4.4 Score=26.54 Aligned_cols=75 Identities=7% Similarity=-0.057 Sum_probs=49.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+ +|.+...+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|+.+..
T Consensus 14 vlVTGa-s~gIG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~ 77 (264)
T 3ucx_A 14 VVISGV-GPALGTTLARRCAE---------QGADLVLAARTVERLEDVAKQVTDTG------RRALSVGTDITDDAQVAH 77 (264)
T ss_dssp EEEESC-CTTHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHH
T ss_pred EEEECC-CcHHHHHHHHHHHH---------CcCEEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEcCCCCHHHHHH
Confidence 444444 44455666555431 36789999999988887777665543 27888888877642
Q ss_pred -C-----CCCCeeEEEEcccc
Q psy890 79 -I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l 93 (131)
+ ..+..|+++.+.+.
T Consensus 78 ~~~~~~~~~g~id~lv~nAg~ 98 (264)
T 3ucx_A 78 LVDETMKAYGRVDVVINNAFR 98 (264)
T ss_dssp HHHHHHHHTSCCSEEEECCCS
T ss_pred HHHHHHHHcCCCcEEEECCCC
Confidence 1 12468999987644
|
| >1ej6_A Lambda2; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1 PDB: 2cse_U | Back alignment and structure |
|---|
Probab=87.36 E-value=1.2 Score=35.88 Aligned_cols=90 Identities=19% Similarity=0.138 Sum_probs=60.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-IE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~~ 80 (131)
.+||+|.|.-. .++..++ ....++.+|.-+. ......+.. ...|+..|..... ..
T Consensus 824 ~~lDlGTGPE~---RiLsLiP----------~~~pvtm~D~RP~-------ae~~~~w~~----~T~f~~~DyL~~~~~~ 879 (1289)
T 1ej6_A 824 VVLDLGTGPEA---KILELIP----------ATSPVTCVDIRPT-------AQPSGCWNV----RTTFLELDYLSDGWIT 879 (1289)
T ss_dssp CEEEESCCSSC---GGGGTSC----------TTSCEEEEESSCC-------CSCSTTBSS----CEEEEESCTTSSSCGG
T ss_pred eEEEccCCCcc---eeeeecC----------CCCceEEecccCc-------hhhhccccc----cceeeEccccccceee
Confidence 57899888843 2233333 4678999998551 112334443 6899999977654 23
Q ss_pred CCCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcE
Q psy890 81 SDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~ 115 (131)
...+|.+.|.+.|..- ..+...++++.+..++.|.
T Consensus 880 ~~~~D~vt~i~SLGAA~A~a~~tl~~~~~q~l~~~~~~~~ 919 (1289)
T 1ej6_A 880 GVRGDIVTCMLSLGAAAAGKSMTFDAAFQQLIKVLSKSTA 919 (1289)
T ss_dssp GCCCSEEEECSCHHHHHHHHTCCHHHHHHHHHHHHHTSCC
T ss_pred cCCCcEEEEEeechhhhhccCCcHHHHHHHHHHHHHhcCc
Confidence 4568999998877432 2678889999988877764
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.23 E-value=3.8 Score=27.48 Aligned_cols=98 Identities=11% Similarity=0.091 Sum_probs=60.1
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----- 78 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 78 (131)
|=-|+++ -+...+++.+-+ .+.+|..+|.+++.++...+.+.. +...+..|+.+..
T Consensus 33 lVTGas~-GIG~aiA~~la~---------~Ga~V~i~~r~~~~l~~~~~~~g~---------~~~~~~~Dv~~~~~v~~~ 93 (273)
T 4fgs_A 33 VITGATS-GIGLAAAKRFVA---------EGARVFITGRRKDVLDAAIAEIGG---------GAVGIQADSANLAELDRL 93 (273)
T ss_dssp EEESCSS-HHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHCT---------TCEEEECCTTCHHHHHHH
T ss_pred EEeCcCC-HHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHcCC---------CeEEEEecCCCHHHHHHH
Confidence 3334444 355555555431 378999999999888776655421 6677788876542
Q ss_pred C-----CCCCeeEEEEcccccccc--------C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 I-----ESDSYSAYTIAFGIRNVT--------R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ~-----~~~~~D~i~~~~~l~~~~--------~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ .-+..|+++.+.+..... + .-...+.+.++|+.+|.++.+.
T Consensus 94 ~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 94 YEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp HHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred HHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 0 125789999877653221 1 1233455667788888876653
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=87.18 E-value=1.2 Score=30.22 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=52.3
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-cc-C
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA-EE-L 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~~-~ 77 (131)
+||-.|+ |.|..+..+++.. +.++++++.+++-++.+++ + +.. .+ +-..+. .+ .
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~------------Ga~vi~~~~~~~~~~~~~~-l---Ga~-----~~-i~~~~~~~~~~ 209 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKR------------GYTVEASTGKAAEHDYLRV-L---GAK-----EV-LAREDVMAERI 209 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHT------------TCCEEEEESCTTCHHHHHH-T---TCS-----EE-EECC-------
T ss_pred eEEEecCCCHHHHHHHHHHHHC------------CCEEEEEECCHHHHHHHHH-c---CCc-----EE-EecCCcHHHHH
Confidence 4566675 4566677777664 4679999988776666653 1 211 11 111111 01 1
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+-.-+- ..+.+..+.++++|+++++-
T Consensus 210 ~~~~~~~~d~vid~~g~-------~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 210 RPLDKQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp --CCSCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECS
T ss_pred HHhcCCcccEEEECCcH-------HHHHHHHHhhccCCEEEEEe
Confidence 1223469999875442 13677788999999988753
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.15 E-value=0.6 Score=30.94 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=30.9
Q ss_pred eEEecccccC--CCCCCCeeEEEEccccccc--------------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 68 RFLEANAEEL--PIESDSYSAYTIAFGIRNV--------------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 68 ~~~~~d~~~~--~~~~~~~D~i~~~~~l~~~--------------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+++.+|..+. .++.++||+|++.-....- .-....+.++.++|+|+|.+++.
T Consensus 6 ~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~ 73 (260)
T 1g60_A 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (260)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555554321 1344578888773221100 12356778889999999998764
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=86.39 E-value=5.7 Score=26.65 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=50.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+ +|.+...+++.+.. .+.+|+.++.+++.++...+.+...+ .++.++..|+.+..
T Consensus 34 vlVTGa-s~gIG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dv~d~~~v~~ 97 (301)
T 3tjr_A 34 AVVTGG-ASGIGLATATEFAR---------RGARLVLSDVDQPALEQAVNGLRGQG------FDAHGVVCDVRHLDEMVR 97 (301)
T ss_dssp EEEETT-TSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHH
T ss_pred EEEeCC-CCHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC------CceEEEEccCCCHHHHHH
Confidence 444444 45566666665531 36789999999988888777766543 27888888977642
Q ss_pred -CC-----CCCeeEEEEccccc
Q psy890 79 -IE-----SDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~~-----~~~~D~i~~~~~l~ 94 (131)
+. .+..|+++.+.+..
T Consensus 98 ~~~~~~~~~g~id~lvnnAg~~ 119 (301)
T 3tjr_A 98 LADEAFRLLGGVDVVFSNAGIV 119 (301)
T ss_dssp HHHHHHHHHSSCSEEEECCCCC
T ss_pred HHHHHHHhCCCCCEEEECCCcC
Confidence 11 13689999877653
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=86.31 E-value=6.3 Score=31.55 Aligned_cols=43 Identities=7% Similarity=-0.090 Sum_probs=33.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCC-CeEEEEeCCHHHHHHHHHHhh
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCA-PHVTVADINRAMLDVGEQRAR 55 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~~~~~~~ 55 (131)
++++|+-||.|.++.-+.+. +. ..+.++|+++.+....+.+++
T Consensus 541 l~~iDLFaG~GGlslGl~~A------------G~~~vv~avEid~~A~~ty~~N~p 584 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQA------------GISDTLWAIEMWDPAAQAFRLNNP 584 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHH------------TSEEEEEEECSSHHHHHHHHHHCT
T ss_pred CeEEEeccCccHHHHHHHHC------------CCCceEEEEECCHHHHHHHHHhCC
Confidence 46899999999998877664 12 358899999998887777654
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.27 E-value=1 Score=30.62 Aligned_cols=90 Identities=19% Similarity=0.153 Sum_probs=53.4
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc--ccC
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA--EEL 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~ 77 (131)
+||-.|+ |.|.....+++.. +.++++++.+++-++.+++. +.. .+ +-..+. ...
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~------------Ga~vi~~~~~~~~~~~~~~l----Ga~-----~v-~~~~~~~~~~~ 210 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKR------------GYDVVASTGNREAADYLKQL----GAS-----EV-ISREDVYDGTL 210 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHH------------TCCEEEEESSSSTHHHHHHH----TCS-----EE-EEHHHHCSSCC
T ss_pred eEEEECCCCHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHHc----CCc-----EE-EECCCchHHHH
Confidence 4566665 4556666666664 45799999887766666532 211 11 111111 111
Q ss_pred -CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
......+|+|+...+ . ..+.+..+.++++|+++++-
T Consensus 211 ~~~~~~~~d~vid~~g-----~--~~~~~~~~~l~~~G~iv~~G 247 (330)
T 1tt7_A 211 KALSKQQWQGAVDPVG-----G--KQLASLLSKIQYGGSVAVSG 247 (330)
T ss_dssp CSSCCCCEEEEEESCC-----T--HHHHHHHTTEEEEEEEEECC
T ss_pred HHhhcCCccEEEECCc-----H--HHHHHHHHhhcCCCEEEEEe
Confidence 122346999987543 2 25778889999999988753
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.98 E-value=0.39 Score=33.47 Aligned_cols=66 Identities=17% Similarity=0.156 Sum_probs=41.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
|+|+=+|| |..+..+++.+. ....++..|.+.+.++.+++ ....+..|+.+.. +
T Consensus 17 mkilvlGa--G~vG~~~~~~L~----------~~~~v~~~~~~~~~~~~~~~-------------~~~~~~~d~~d~~~l 71 (365)
T 3abi_A 17 MKVLILGA--GNIGRAIAWDLK----------DEFDVYIGDVNNENLEKVKE-------------FATPLKVDASNFDKL 71 (365)
T ss_dssp CEEEEECC--SHHHHHHHHHHT----------TTSEEEEEESCHHHHHHHTT-------------TSEEEECCTTCHHHH
T ss_pred cEEEEECC--CHHHHHHHHHHh----------cCCCeEEEEcCHHHHHHHhc-------------cCCcEEEecCCHHHH
Confidence 78899988 667777777764 24678999999877665532 3334455554321 1
Q ss_pred --CCCCeeEEEEcc
Q psy890 80 --ESDSYSAYTIAF 91 (131)
Q Consensus 80 --~~~~~D~i~~~~ 91 (131)
.-...|+|++..
T Consensus 72 ~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 72 VEVMKEFELVIGAL 85 (365)
T ss_dssp HHHHTTCSEEEECC
T ss_pred HHHHhCCCEEEEec
Confidence 113578888753
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=85.69 E-value=0.87 Score=31.22 Aligned_cols=94 Identities=16% Similarity=0.229 Sum_probs=52.2
Q ss_pred ceeeeecccc-hhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 2 YILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 2 ~iLdig~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
++|=+|+|++ ..+..+++... +.+++++|.+++-++.+++.-... -+.....|..+ . .
T Consensus 166 ~VlV~GaG~~g~~a~~~a~~~~-----------g~~Vi~~~~~~~r~~~~~~~Ga~~--------~i~~~~~~~~~~v~~ 226 (348)
T 4eez_A 166 WQVIFGAGGLGNLAIQYAKNVF-----------GAKVIAVDINQDKLNLAKKIGADV--------TINSGDVNPVDEIKK 226 (348)
T ss_dssp EEEEECCSHHHHHHHHHHHHTS-----------CCEEEEEESCHHHHHHHHHTTCSE--------EEEC-CCCHHHHHHH
T ss_pred EEEEEcCCCccHHHHHHHHHhC-----------CCEEEEEECcHHHhhhhhhcCCeE--------EEeCCCCCHHHHhhh
Confidence 4566777653 34455555543 689999999997666655332110 11111112111 1 0
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.....+|.++...+ ....+....+.++++|.++++-
T Consensus 227 ~t~g~g~d~~~~~~~------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 227 ITGGLGVQSAIVCAV------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp HTTSSCEEEEEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred hcCCCCceEEEEecc------CcchhheeheeecCCceEEEEe
Confidence 12335677665322 2345788889999999987753
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.33 E-value=3 Score=27.19 Aligned_cols=75 Identities=9% Similarity=-0.065 Sum_probs=46.4
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeC-CHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADI-NRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.| |+|.+...+++.+.+ .+.++++++. +++..+...+.+...+ .++.++..|+.+..
T Consensus 24 vlItG-asggiG~~la~~l~~---------~G~~v~~~~r~~~~~~~~~~~~l~~~~------~~~~~~~~D~~~~~~~~ 87 (274)
T 1ja9_A 24 ALTTG-AGRGIGRGIAIELGR---------RGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISKPSEVV 87 (274)
T ss_dssp EEETT-TTSHHHHHHHHHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHH
T ss_pred EEEeC-CCchHHHHHHHHHHH---------CCCEEEEEcCCchHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHH
Confidence 44344 566677777666532 2568999888 7766665555554432 26788888877532
Q ss_pred --CC-----CCCeeEEEEcccc
Q psy890 79 --IE-----SDSYSAYTIAFGI 93 (131)
Q Consensus 79 --~~-----~~~~D~i~~~~~l 93 (131)
+. -+.+|+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~d~vi~~Ag~ 109 (274)
T 1ja9_A 88 ALFDKAVSHFGGLDFVMSNSGM 109 (274)
T ss_dssp HHHHHHHHHHSCEEEEECCCCC
T ss_pred HHHHHHHHHcCCCCEEEECCCC
Confidence 11 1368999887654
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=85.18 E-value=6 Score=25.88 Aligned_cols=55 Identities=4% Similarity=-0.008 Sum_probs=39.1
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C-----CCCCeeEEEEcccc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~~~D~i~~~~~l 93 (131)
+.+|..++.+++..+.+.+.++..+-. ++.++..|+.+.. + .-+..|+++.+.+.
T Consensus 32 Ga~Vvi~~r~~~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD~lvnnAg~ 96 (256)
T 4fs3_A 32 GAKLVFTYRKERSRKELEKLLEQLNQP-----EAHLYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAF 96 (256)
T ss_dssp TCEEEEEESSGGGHHHHHHHHGGGTCS-----SCEEEECCTTCHHHHHHHHHHHHHHHCCCSEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCCC-----cEEEEEccCCCHHHHHHHHHHHHHHhCCCCEEEecccc
Confidence 789999999988888877777654322 6788888876532 0 12578999887654
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=84.93 E-value=0.97 Score=28.04 Aligned_cols=94 Identities=16% Similarity=0.100 Sum_probs=56.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PI- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~- 79 (131)
-|||+|-|.|+.--.+.+.++ ..+++++|-.-. ......++ .-.++.+|+.+. +.
T Consensus 43 pVlElGLGNGRTydHLRe~~P-----------~R~I~vfDR~~~--------~hp~~~P~----~e~~ilGdi~~tL~~~ 99 (174)
T 3iht_A 43 PVYELGLGNGRTYHHLRQHVQ-----------GREIYVFERAVA--------SHPDSTPP----EAQLILGDIRETLPAT 99 (174)
T ss_dssp CEEEECCTTCHHHHHHHHHCC-----------SSCEEEEESSCC--------CCGGGCCC----GGGEEESCHHHHHHHH
T ss_pred ceEEecCCCChhHHHHHHhCC-----------CCcEEEEEeeec--------cCCCCCCc----hHheecccHHHHHHHH
Confidence 389999999998888888775 788999995221 00111111 446677776653 11
Q ss_pred -C--CCCeeEEEEccccccccCHH----HHHHHHHHhccCCcEEEE
Q psy890 80 -E--SDSYSAYTIAFGIRNVTRID----KALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 -~--~~~~D~i~~~~~l~~~~~~~----~~l~~~~~~L~p~G~l~~ 118 (131)
. ..+.-++..-.+.++-.+-. ..-..+..+|.|||+++-
T Consensus 100 ~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~GGi~vS 145 (174)
T 3iht_A 100 LERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQGGLMVS 145 (174)
T ss_dssp HHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred HHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcCCcEEEe
Confidence 1 34556666655544433211 122345577899999864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=84.79 E-value=7.3 Score=26.52 Aligned_cols=89 Identities=12% Similarity=0.045 Sum_probs=50.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCC--eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|.-|| .|.....++..+.. .+. +|+++|.+++.++.+.+ .+. +.-...+..+.
T Consensus 35 kI~IIG--~G~mG~slA~~l~~---------~G~~~~V~~~dr~~~~~~~a~~----~G~-------~~~~~~~~~~~-- 90 (314)
T 3ggo_A 35 NVLIVG--VGFMGGSFAKSLRR---------SGFKGKIYGYDINPESISKAVD----LGI-------IDEGTTSIAKV-- 90 (314)
T ss_dssp EEEEES--CSHHHHHHHHHHHH---------TTCCSEEEEECSCHHHHHHHHH----TTS-------CSEEESCTTGG--
T ss_pred EEEEEe--eCHHHHHHHHHHHh---------CCCCCEEEEEECCHHHHHHHHH----CCC-------cchhcCCHHHH--
Confidence 455565 45566666555431 133 89999999987766543 221 11111232220
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
.-...|+|+..-... .....+.++...++++.+++
T Consensus 91 ~~~~aDvVilavp~~---~~~~vl~~l~~~l~~~~iv~ 125 (314)
T 3ggo_A 91 EDFSPDFVMLSSPVR---TFREIAKKLSYILSEDATVT 125 (314)
T ss_dssp GGGCCSEEEECSCGG---GHHHHHHHHHHHSCTTCEEE
T ss_pred hhccCCEEEEeCCHH---HHHHHHHHHhhccCCCcEEE
Confidence 113469998764433 34567788888898887654
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=84.78 E-value=0.86 Score=30.66 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=51.9
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+||-.|+ |.|.....+++.. +.++++++.+++-.+.+++ + +.. .+ +-..+..+...
T Consensus 128 ~vlV~Ga~G~vG~~~~~~a~~~------------Ga~Vi~~~~~~~~~~~~~~-~---ga~-----~~-~~~~~~~~~~~ 185 (302)
T 1iz0_A 128 KVLVQAAAGALGTAAVQVARAM------------GLRVLAAASRPEKLALPLA-L---GAE-----EA-ATYAEVPERAK 185 (302)
T ss_dssp EEEESSTTBHHHHHHHHHHHHT------------TCEEEEEESSGGGSHHHHH-T---TCS-----EE-EEGGGHHHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHC------------CCEEEEEeCCHHHHHHHHh-c---CCC-----EE-EECCcchhHHH
Confidence 4666776 4566666666664 4689999998877766643 1 211 11 11111011100
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.-..+|+|+. .+- ..+....+.|+++|+++.+
T Consensus 186 ~~~~~d~vid-~g~-------~~~~~~~~~l~~~G~~v~~ 217 (302)
T 1iz0_A 186 AWGGLDLVLE-VRG-------KEVEESLGLLAHGGRLVYI 217 (302)
T ss_dssp HTTSEEEEEE-CSC-------TTHHHHHTTEEEEEEEEEC
T ss_pred HhcCceEEEE-CCH-------HHHHHHHHhhccCCEEEEE
Confidence 0056999987 442 2467788999999998765
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.66 E-value=7.4 Score=26.47 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=52.7
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEec--ccccC-
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA--NAEEL- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d~~~~- 77 (131)
+||=.|+| .|..+..+++..+ ...++++|.+++-++.+++. +. ...+-.. +..+.
T Consensus 163 ~VlV~GaG~vG~~aiq~ak~~G-----------~~~vi~~~~~~~k~~~a~~l----Ga------~~~i~~~~~~~~~~~ 221 (346)
T 4a2c_A 163 NVIIIGAGTIGLLAIQCAVALG-----------AKSVTAIDISSEKLALAKSF----GA------MQTFNSSEMSAPQMQ 221 (346)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHT----TC------SEEEETTTSCHHHHH
T ss_pred EEEEECCCCcchHHHHHHHHcC-----------CcEEEEEechHHHHHHHHHc----CC------eEEEeCCCCCHHHHH
Confidence 35556664 3455666666653 45688999999877766542 21 1111111 11110
Q ss_pred -C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 -P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 -~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .....+|+|+...+ ....+....+.++++|.+.+.-
T Consensus 222 ~~~~~~~g~d~v~d~~G------~~~~~~~~~~~l~~~G~~v~~g 260 (346)
T 4a2c_A 222 SVLRELRFNQLILETAG------VPQTVELAVEIAGPHAQLALVG 260 (346)
T ss_dssp HHHGGGCSSEEEEECSC------SHHHHHHHHHHCCTTCEEEECC
T ss_pred HhhcccCCccccccccc------ccchhhhhhheecCCeEEEEEe
Confidence 0 12245788876432 2345778889999999998754
|
| >3iyl_W VP1; non-enveloped virus, membrane penetration protein, autocleav myristol group, icosahedral virus; HET: MYR; 3.30A {Grass carp reovirus} PDB: 3k1q_A | Back alignment and structure |
|---|
Probab=84.40 E-value=1.4 Score=35.58 Aligned_cols=90 Identities=14% Similarity=0.081 Sum_probs=61.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCc-eeEEecccccCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPR-LRFLEANAEELP-I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~~~~-~ 79 (131)
.+||+|.|.-. .++..++ +...++.+|.-+. ......|.. . ..|+..|..... .
T Consensus 830 ~~lDLGTGPEc---RiLsliP----------~~~pvtmvD~RP~-------ae~~~~w~~----~~T~yi~~DYl~~~~~ 885 (1299)
T 3iyl_W 830 HLLDLGTGPEC---RILSLIP----------PTLQVTMSDSRPC-------AELMASFDP----ALTAYVQGDYSTAAFW 885 (1299)
T ss_dssp SEEEETCCSSC---SGGGSSC----------TTSCEEEEESSCC-------SSCGGGBCT----TTEEEEESCSSSGGGG
T ss_pred EEEEcCCCccc---eeeecCC----------CCCceEEEecCCc-------ccccccccc----ccceeEEeccccceeE
Confidence 57888888742 1233333 4678999997551 123344554 5 889999977654 3
Q ss_pred CCCCeeEEEEccccccc-----cCHHHHHHHHHHhccCCcE
Q psy890 80 ESDSYSAYTIAFGIRNV-----TRIDKALSEAYRVLKPGGR 115 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~-----~~~~~~l~~~~~~L~p~G~ 115 (131)
....+|.+.|.+.|..- -++...++++.+..+++|.
T Consensus 886 ~~~~~d~vtailSLGAA~a~a~~tl~~~l~~~l~~~~~~~v 926 (1299)
T 3iyl_W 886 NGIRCDSATAIFTIGAAAAAAGTDLIAFVQQLIPRIVAAGG 926 (1299)
T ss_dssp SSCCCSEEEETTTHHHHHHHTTCCHHHHHHHHHHHHHHTTC
T ss_pred ecCCCCEEEEeeechhhhhhCCCcHHHHHHHHHHHHHhcCc
Confidence 44678999998877432 2678889999999888775
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=84.36 E-value=1.6 Score=29.97 Aligned_cols=90 Identities=11% Similarity=0.070 Sum_probs=52.0
Q ss_pred eeeee-c-ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 3 ILFYL-V-FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 3 iLdig-~-G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
||-.| + +.|..+..+++.. +.++++++.+++-++.+++. +.. .+.-...+..+ . .
T Consensus 154 VlV~gg~G~vG~~a~qla~~~------------Ga~Vi~~~~~~~~~~~~~~l----Ga~-----~vi~~~~~~~~~~~~ 212 (346)
T 3fbg_A 154 LLIINGAGGVGSIATQIAKAY------------GLRVITTASRNETIEWTKKM----GAD-----IVLNHKESLLNQFKT 212 (346)
T ss_dssp EEEESTTSHHHHHHHHHHHHT------------TCEEEEECCSHHHHHHHHHH----TCS-----EEECTTSCHHHHHHH
T ss_pred EEEEcCCCHHHHHHHHHHHHc------------CCEEEEEeCCHHHHHHHHhc----CCc-----EEEECCccHHHHHHH
Confidence 44453 2 3455566666653 56999999988877777652 211 11000001100 0 0
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.....+|+|+.... ....+..+.+.|+++|+++.+
T Consensus 213 ~~~~g~Dvv~d~~g------~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 213 QGIELVDYVFCTFN------TDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp HTCCCEEEEEESSC------HHHHHHHHHHHEEEEEEEEES
T ss_pred hCCCCccEEEECCC------chHHHHHHHHHhccCCEEEEE
Confidence 12356999987533 234567888999999998654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=84.27 E-value=6.6 Score=25.58 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=39.6
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C-----CCCCeeEEEEccccc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I-----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~~~D~i~~~~~l~ 94 (131)
+.+|+.++.+++..+...+.+..... .++.++..|+.+.. + ..+.+|+++.+.+..
T Consensus 47 G~~V~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~id~li~~Ag~~ 112 (266)
T 3o38_A 47 GADVVISDYHERRLGETRDQLADLGL-----GRVEAVVCDVTSTEAVDALITQTVEKAGRLDVLVNNAGLG 112 (266)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHTTCS-----SCEEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhcCC-----CceEEEEeCCCCHHHHHHHHHHHHHHhCCCcEEEECCCcC
Confidence 67899999999888877776654331 27889999987642 1 013689999877653
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=84.19 E-value=5.7 Score=27.18 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=29.5
Q ss_pred CCeeEEEEcccc----cc-c--cC----HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGI----RN-V--TR----IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l----~~-~--~~----~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+.||+|++...- |+ . .| ..-++.....+|+|||.+++--+...
T Consensus 205 ~k~DvV~SDMApn~sGh~yqQC~DHarii~Lal~fA~~vLkPGGtfV~Kvygga 258 (320)
T 2hwk_A 205 PKYDIIFVNVRTPYKYHHYQQCEDHAIKLSMLTKKACLHLNPGGTCVSIGYGYA 258 (320)
T ss_dssp CCEEEEEEECCCCCCSCHHHHHHHHHHHHHHTHHHHGGGEEEEEEEEEEECCCC
T ss_pred CcCCEEEEcCCCCCCCccccccchHHHHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 669999996542 22 1 11 22356677889999999998776655
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.15 E-value=6.9 Score=25.73 Aligned_cols=102 Identities=14% Similarity=0.058 Sum_probs=58.3
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEe-CCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVAD-INRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.|+ +|.+...+++.+-. .+.+++..+ .+++..+...+.+...+ .++.++..|+.+..
T Consensus 30 ~lVTGa-s~GIG~aia~~la~---------~G~~Vv~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dl~~~~~v~ 93 (267)
T 3u5t_A 30 AIVTGA-SRGIGAAIAARLAS---------DGFTVVINYAGKAAAAEEVAGKIEAAG------GKALTAQADVSDPAAVR 93 (267)
T ss_dssp EEEESC-SSHHHHHHHHHHHH---------HTCEEEEEESSCSHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHH
T ss_pred EEEeCC-CCHHHHHHHHHHHH---------CCCEEEEEcCCCHHHHHHHHHHHHhcC------CeEEEEEcCCCCHHHHH
Confidence 343444 44555555555421 256777764 45555555555554433 26888888877642
Q ss_pred --C-----CCCCeeEEEEcccccccc--------C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 --I-----ESDSYSAYTIAFGIRNVT--------R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 --~-----~~~~~D~i~~~~~l~~~~--------~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ ..+..|+++.+.+..... + ....++.+.+.|+++|.++.+.
T Consensus 94 ~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 94 RLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp HHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 1 014789999877653221 1 1233556667777788887764
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=83.74 E-value=6.4 Score=25.04 Aligned_cols=71 Identities=6% Similarity=-0.053 Sum_probs=45.0
Q ss_pred eecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-------
Q psy890 6 YLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP------- 78 (131)
Q Consensus 6 ig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~------- 78 (131)
|-.|+|.+...+++.+.. .+.+|+.++.+++.++...+.+. .++.++..|+.+..
T Consensus 6 VTGas~gIG~~~a~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~~~~ 67 (230)
T 3guy_A 6 ITGASSGLGAELAKLYDA---------EGKATYLTGRSESKLSTVTNCLS---------NNVGYRARDLASHQEVEQLFE 67 (230)
T ss_dssp EESTTSHHHHHHHHHHHH---------TTCCEEEEESCHHHHHHHHHTCS---------SCCCEEECCTTCHHHHHHHHH
T ss_pred EecCCchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHh---------hccCeEeecCCCHHHHHHHHH
Confidence 444455666666666531 35789999999887776655441 16778888876542
Q ss_pred CCCCCeeEEEEccccc
Q psy890 79 IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~ 94 (131)
.-.+.+|+++.+.+..
T Consensus 68 ~~~~~~d~lv~~Ag~~ 83 (230)
T 3guy_A 68 QLDSIPSTVVHSAGSG 83 (230)
T ss_dssp SCSSCCSEEEECCCCC
T ss_pred HHhhcCCEEEEeCCcC
Confidence 1123459998876643
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=83.59 E-value=6.4 Score=25.61 Aligned_cols=72 Identities=13% Similarity=0.079 Sum_probs=46.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.| |+|.+...+++.+.. .+.+|+.+|.+.+..+...+.+. .++.++..|+.+..
T Consensus 11 vlVTG-as~gIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~---------~~~~~~~~D~~~~~~v~~ 71 (259)
T 4e6p_A 11 ALITG-SARGIGRAFAEAYVR---------EGATVAIADIDIERARQAAAEIG---------PAAYAVQMDVTRQDSIDA 71 (259)
T ss_dssp EEEET-CSSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHC---------TTEEEEECCTTCHHHHHH
T ss_pred EEEEC-CCcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHhC---------CCceEEEeeCCCHHHHHH
Confidence 44444 455566666665531 36789999999877766655442 16788888876532
Q ss_pred -C-----CCCCeeEEEEcccc
Q psy890 79 -I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l 93 (131)
+ ..+..|+++.+.+.
T Consensus 72 ~~~~~~~~~g~id~lv~~Ag~ 92 (259)
T 4e6p_A 72 AIAATVEHAGGLDILVNNAAL 92 (259)
T ss_dssp HHHHHHHHSSSCCEEEECCCC
T ss_pred HHHHHHHHcCCCCEEEECCCc
Confidence 1 12368999987765
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=83.36 E-value=9.5 Score=26.69 Aligned_cols=97 Identities=9% Similarity=0.031 Sum_probs=59.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.||.++.+.|.++-.++.. .++.+.-|--.....+.+...+++.+ ..+++...- .. ..
T Consensus 41 ~~~~~~d~~gal~~~~~~~---------------~~~~~~ds~~~~~~~~~n~~~~~~~~---~~~~~~~~~-~~---~~ 98 (375)
T 4dcm_A 41 PVLILNDAFGALSCALAEH---------------KPYSIGDSYISELATRENLRLNGIDE---SSVKFLDST-AD---YP 98 (375)
T ss_dssp CEEEECCSSSHHHHHTGGG---------------CCEEEESCHHHHHHHHHHHHHTTCCG---GGSEEEETT-SC---CC
T ss_pred CEEEECCCCCHHHHhhccC---------------CceEEEhHHHHHHHHHHHHHHcCCCc---cceEecccc-cc---cc
Confidence 4788888899887766543 12344436655556666777666543 135543221 11 23
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..||+|+.... .........|.++...|+|++.+++..-
T Consensus 99 ~~~~~v~~~lp-k~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 99 QQPGVVLIKVP-KTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp SSCSEEEEECC-SCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred cCCCEEEEEcC-CCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 56899877432 2233456678888899999999987643
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=83.35 E-value=5.2 Score=26.14 Aligned_cols=102 Identities=11% Similarity=-0.004 Sum_probs=58.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEE-eCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVA-DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.|+ +|.+...+++.+-. .+.+++.+ +.+++..+...+.+...+ .++.++..|+.+..
T Consensus 11 vlVTGa-s~GIG~aia~~la~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~ 74 (259)
T 3edm_A 11 IVVAGA-GRDIGRACAIRFAQ---------EGANVVLTYNGAAEGAATAVAEIEKLG------RSALAIKADLTNAAEVE 74 (259)
T ss_dssp EEEETT-TSHHHHHHHHHHHH---------TTCEEEEEECSSCHHHHHHHHHHHTTT------SCCEEEECCTTCHHHHH
T ss_pred EEEECC-CchHHHHHHHHHHH---------CCCEEEEEcCCCHHHHHHHHHHHHhcC------CceEEEEcCCCCHHHHH
Confidence 344444 44566666665531 25678877 666666666655555433 26788888877642
Q ss_pred --CC-----CCCeeEEEEccccc-cc---c-----C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 --IE-----SDSYSAYTIAFGIR-NV---T-----R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 --~~-----~~~~D~i~~~~~l~-~~---~-----~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+. -+..|+++.+.+.. .. . + .....+.+.+.|+++|.++.+.
T Consensus 75 ~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 75 AAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp HHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 10 14689999876543 11 1 0 1233455666677778877654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=83.32 E-value=7.9 Score=25.75 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=52.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHh-hhccCCCCCCCceeEEec---cccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRA-RDLFKVPVPNPRLRFLEA---NAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---d~~~ 76 (131)
|+|.-+|+ |.....++..+.. .+.+|+++|.+++.++..++.- ...... ....... +..+
T Consensus 4 m~i~iiG~--G~~G~~~a~~l~~---------~g~~V~~~~r~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~ 67 (316)
T 2ew2_A 4 MKIAIAGA--GAMGSRLGIMLHQ---------GGNDVTLIDQWPAHIEAIRKNGLIADFNG-----EEVVANLPIFSPEE 67 (316)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH---------TTCEEEEECSCHHHHHHHHHHCEEEEETT-----EEEEECCCEECGGG
T ss_pred CeEEEECc--CHHHHHHHHHHHh---------CCCcEEEEECCHHHHHHHHhCCEEEEeCC-----CeeEecceeecchh
Confidence 56777776 4565555554431 1458999999987776665431 000000 0000001 1111
Q ss_pred CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....-..+|+|+..-.-. .....+.++...++++..++..
T Consensus 68 ~~~~~~~~d~vi~~v~~~---~~~~v~~~l~~~l~~~~~iv~~ 107 (316)
T 2ew2_A 68 IDHQNEQVDLIIALTKAQ---QLDAMFKAIQPMITEKTYVLCL 107 (316)
T ss_dssp CCTTSCCCSEEEECSCHH---HHHHHHHHHGGGCCTTCEEEEC
T ss_pred hcccCCCCCEEEEEeccc---cHHHHHHHHHHhcCCCCEEEEe
Confidence 100012589998854322 3466777888888888766543
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=83.12 E-value=7.8 Score=25.55 Aligned_cols=74 Identities=11% Similarity=-0.054 Sum_probs=47.7
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C---
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I--- 79 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 79 (131)
.|+|.+...+++.+-. .+.+|+.+|.+++..+...+.+...+... .++.++..|+.+.. +
T Consensus 18 Gas~gIG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~ 85 (281)
T 3svt_A 18 GGGSGIGKGVAAGLVA---------AGASVMIVGRNPDKLAGAVQELEALGANG---GAIRYEPTDITNEDETARAVDAV 85 (281)
T ss_dssp TTTSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHTTCCSS---CEEEEEECCTTSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHHhCCCC---ceEEEEeCCCCCHHHHHHHHHHH
Confidence 3455566666665531 36789999999988877777665543211 16788888877642 1
Q ss_pred --CCCCeeEEEEcccc
Q psy890 80 --ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 --~~~~~D~i~~~~~l 93 (131)
..+..|+++.+.+.
T Consensus 86 ~~~~g~id~lv~nAg~ 101 (281)
T 3svt_A 86 TAWHGRLHGVVHCAGG 101 (281)
T ss_dssp HHHHSCCCEEEECCCC
T ss_pred HHHcCCCCEEEECCCc
Confidence 01368999987765
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=82.98 E-value=7.6 Score=25.29 Aligned_cols=105 Identities=11% Similarity=0.139 Sum_probs=60.9
Q ss_pred eeeeecccc-hhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPG-DIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.|++++ -+...+++.+.. .+.+|+.++.++...+...+.....+. .++.++..|+.+..
T Consensus 10 vlVTGasg~~GIG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~ 75 (266)
T 3oig_A 10 IVVMGVANKRSIAWGIARSLHE---------AGARLIFTYAGERLEKSVHELAGTLDR-----NDSIILPCDVTNDAEIE 75 (266)
T ss_dssp EEEECCCSTTSHHHHHHHHHHH---------TTCEEEEEESSGGGHHHHHHHHHTSSS-----CCCEEEECCCSSSHHHH
T ss_pred EEEEcCCCCCcHHHHHHHHHHH---------CCCEEEEecCchHHHHHHHHHHHhcCC-----CCceEEeCCCCCHHHHH
Confidence 444554421 155555555431 267899999887655555555444331 16888888987642
Q ss_pred --CC-----CCCeeEEEEcccccc----------cc--CH-----------HHHHHHHHHhccCCcEEEEEec
Q psy890 79 --IE-----SDSYSAYTIAFGIRN----------VT--RI-----------DKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 --~~-----~~~~D~i~~~~~l~~----------~~--~~-----------~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+. .+.+|+++.+.+... .+ +. ...++.+.+.|+++|.++.+..
T Consensus 76 ~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 76 TCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp HHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred HHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 10 136899988766532 00 11 1245566777888888887653
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=82.87 E-value=7.6 Score=25.23 Aligned_cols=76 Identities=9% Similarity=-0.067 Sum_probs=50.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+ +|.+...+++.+-. .+.+|+.++.+++.++...+.+...+ .++.++..|+.+..
T Consensus 10 vlVTGa-s~GIG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~v~~ 73 (252)
T 3h7a_A 10 VAVIGA-GDYIGAEIAKKFAA---------EGFTVFAGRRNGEKLAPLVAEIEAAG------GRIVARSLDARNEDEVTA 73 (252)
T ss_dssp EEEECC-SSHHHHHHHHHHHH---------TTCEEEEEESSGGGGHHHHHHHHHTT------CEEEEEECCTTCHHHHHH
T ss_pred EEEECC-CchHHHHHHHHHHH---------CCCEEEEEeCCHHHHHHHHHHHHhcC------CeEEEEECcCCCHHHHHH
Confidence 344444 44566666665531 36789999999888877777766543 27888999977642
Q ss_pred -C----CCCCeeEEEEccccc
Q psy890 79 -I----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~----~~~~~D~i~~~~~l~ 94 (131)
+ ..+..|+++.+.+..
T Consensus 74 ~~~~~~~~g~id~lv~nAg~~ 94 (252)
T 3h7a_A 74 FLNAADAHAPLEVTIFNVGAN 94 (252)
T ss_dssp HHHHHHHHSCEEEEEECCCCC
T ss_pred HHHHHHhhCCceEEEECCCcC
Confidence 0 015789999877653
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=82.47 E-value=7.8 Score=29.85 Aligned_cols=49 Identities=8% Similarity=-0.191 Sum_probs=33.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhh
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRAR 55 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~ 55 (131)
|+++|+-||.|-++.-+...-.... .....+.++|+++.+++.-+.+.+
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~------~~f~vv~AvE~d~~A~~Ty~~Nhp 261 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSG------LKLETRWAVDFNSFACQSLKYNHP 261 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHT------EEEEEEEEEESCHHHHHHHHHHCT
T ss_pred CeEEEeCcCccHHHHHHHHhCcccC------CceeEEEEEeCCHHHHHHHHHHCC
Confidence 5799999999998877755421000 002357899999999888877753
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=82.46 E-value=0.24 Score=33.59 Aligned_cols=30 Identities=30% Similarity=0.650 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHhccCCcEEEEEeccCCCcc
Q psy890 98 RIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127 (131)
Q Consensus 98 ~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~ 127 (131)
.+...|..+..+|+|||++.++.++.-+.+
T Consensus 211 ~L~~~L~~a~~~L~~gGrl~visfHSLEDR 240 (285)
T 1wg8_A 211 ALKEFLEQAAEVLAPGGRLVVIAFHSLEDR 240 (285)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEECSHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEecCcHHHH
Confidence 468889999999999999999888765443
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=82.37 E-value=11 Score=26.87 Aligned_cols=91 Identities=9% Similarity=0.003 Sum_probs=52.9
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc-----
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA----- 74 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~----- 74 (131)
+||=+|+ |.|..+..+++.. +.++++++.+++-++.+++. +... -+.....|.
T Consensus 231 ~VlV~GasG~vG~~avqlak~~------------Ga~vi~~~~~~~~~~~~~~l----Ga~~----vi~~~~~d~~~~~~ 290 (456)
T 3krt_A 231 NVLIWGASGGLGSYATQFALAG------------GANPICVVSSPQKAEICRAM----GAEA----IIDRNAEGYRFWKD 290 (456)
T ss_dssp EEEETTTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHH----TCCE----EEETTTTTCCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHc------------CCeEEEEECCHHHHHHHHhh----CCcE----EEecCcCccccccc
Confidence 3555565 4456666666663 56889999888777777542 2110 010001111
Q ss_pred -------------ccCC--CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 75 -------------EELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 75 -------------~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+. .....+|+|+-.-+ ...+....+.|+++|+++++
T Consensus 291 ~~~~~~~~~~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~ 343 (456)
T 3krt_A 291 ENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTC 343 (456)
T ss_dssp TTEECHHHHHHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEES
T ss_pred ccccchHHHHHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEE
Confidence 0000 12357999987543 14677888999999999875
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=82.33 E-value=8.3 Score=25.31 Aligned_cols=74 Identities=7% Similarity=-0.077 Sum_probs=46.9
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----CC-
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----IE- 80 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~- 80 (131)
-.|+|.+...+++.+.. .+.+|++++.+++..+...+.+...+... ++.++..|+.+.. +.
T Consensus 38 TGasggIG~~la~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~Dl~~~~~v~~~~~~ 104 (279)
T 1xg5_A 38 TGASGGIGAAVARALVQ---------QGLKVVGCARTVGNIEELAAECKSAGYPG----TLIPYRCDLSNEEDILSMFSA 104 (279)
T ss_dssp ESTTSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTTCSS----EEEEEECCTTCHHHHHHHHHH
T ss_pred ECCCchHHHHHHHHHHH---------CCCEEEEEECChHHHHHHHHHHHhcCCCc----eEEEEEecCCCHHHHHHHHHH
Confidence 34556667777666531 25789999999877766655555433221 6778888876532 11
Q ss_pred ----CCCeeEEEEcccc
Q psy890 81 ----SDSYSAYTIAFGI 93 (131)
Q Consensus 81 ----~~~~D~i~~~~~l 93 (131)
.+.+|+++.+.+.
T Consensus 105 ~~~~~g~iD~vi~~Ag~ 121 (279)
T 1xg5_A 105 IRSQHSGVDICINNAGL 121 (279)
T ss_dssp HHHHHCCCSEEEECCCC
T ss_pred HHHhCCCCCEEEECCCC
Confidence 1368999987664
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=82.04 E-value=7.9 Score=25.43 Aligned_cols=75 Identities=12% Similarity=0.037 Sum_probs=43.5
Q ss_pred eeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh-ccCCCCCCCceeEEecccccCC--
Q psy890 3 ILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD-LFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 3 iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+|=.|++ +|.+...+++.+.. .+.+|+.++.+++ .....+.+.. .+ .+.++..|+.+..
T Consensus 9 vlVTGas~~~gIG~~~a~~l~~---------~G~~V~~~~r~~~-~~~~~~~l~~~~~-------~~~~~~~D~~~~~~v 71 (275)
T 2pd4_A 9 GLIVGVANNKSIAYGIAQSCFN---------QGATLAFTYLNES-LEKRVRPIAQELN-------SPYVYELDVSKEEHF 71 (275)
T ss_dssp EEEECCCSTTSHHHHHHHHHHT---------TTCEEEEEESSTT-THHHHHHHHHHTT-------CCCEEECCTTCHHHH
T ss_pred EEEECCCCCCcHHHHHHHHHHH---------CCCEEEEEeCCHH-HHHHHHHHHHhcC-------CcEEEEcCCCCHHHH
Confidence 5555654 26677777776542 3578999998775 2222222222 12 4667778876532
Q ss_pred ---C-----CCCCeeEEEEccccc
Q psy890 79 ---I-----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 ---~-----~~~~~D~i~~~~~l~ 94 (131)
+ ..+..|+++.+.+..
T Consensus 72 ~~~~~~~~~~~g~id~lv~nAg~~ 95 (275)
T 2pd4_A 72 KSLYNSVKKDLGSLDFIVHSVAFA 95 (275)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCccC
Confidence 1 124689999877653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.68 E-value=8.9 Score=25.20 Aligned_cols=102 Identities=10% Similarity=0.036 Sum_probs=61.2
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC------------HHHHHHHHHHhhhccCCCCCCCceeEE
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN------------RAMLDVGEQRARDLFKVPVPNPRLRFL 70 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (131)
+|=.| |+|.+...+++.+-. .+.+|+.+|.+ .+.++.....+...+ .++.++
T Consensus 13 vlVTG-as~gIG~~ia~~l~~---------~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 76 (287)
T 3pxx_A 13 VLVTG-GARGQGRSHAVKLAE---------EGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG------RKAYTA 76 (287)
T ss_dssp EEEET-TTSHHHHHHHHHHHH---------TTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT------SCEEEE
T ss_pred EEEeC-CCChHHHHHHHHHHH---------CCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC------CceEEE
Confidence 34344 445566666665531 36789999987 656666555554433 278888
Q ss_pred ecccccCC-----CC-----CCCeeEEEEcccccccc------C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 71 EANAEELP-----IE-----SDSYSAYTIAFGIRNVT------R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 71 ~~d~~~~~-----~~-----~~~~D~i~~~~~l~~~~------~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..|+.+.. +. .+..|+++.+.+..... + ....++.+.+.|+.+|.++.+.
T Consensus 77 ~~D~~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 77 EVDVRDRAAVSRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp ECCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred EccCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 88877642 10 13689999876653211 1 1234456667777888887653
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.98 E-value=10 Score=25.86 Aligned_cols=101 Identities=9% Similarity=-0.024 Sum_probs=51.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~ 78 (131)
|+|.-+|+| .+...++..+.. .+.+|+++|.+++.++..++..... ........++.....+..+.
T Consensus 5 mki~iiG~G--~~G~~~a~~L~~---------~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 72 (359)
T 1bg6_A 5 KTYAVLGLG--NGGHAFAAYLAL---------KGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLA- 72 (359)
T ss_dssp CEEEEECCS--HHHHHHHHHHHH---------TTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHH-
T ss_pred CeEEEECCC--HHHHHHHHHHHh---------CCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHH-
Confidence 467777764 455555544421 1457999999988777665442100 00000000000011121110
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
-..+|+|+..-.-. .....+.++...++++..++.
T Consensus 73 --~~~~D~vi~~v~~~---~~~~~~~~l~~~l~~~~~vv~ 107 (359)
T 1bg6_A 73 --VKDADVILIVVPAI---HHASIAANIASYISEGQLIIL 107 (359)
T ss_dssp --HTTCSEEEECSCGG---GHHHHHHHHGGGCCTTCEEEE
T ss_pred --HhcCCEEEEeCCch---HHHHHHHHHHHhCCCCCEEEE
Confidence 13579888754332 235667788888888776554
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=80.76 E-value=2.5 Score=27.57 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=26.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
|+|.-||+ |.....++..+.+... ....+++++|.+++..+...+.
T Consensus 3 ~~i~iIG~--G~mG~~~a~~l~~~g~-----~~~~~V~~~~r~~~~~~~~~~~ 48 (247)
T 3gt0_A 3 KQIGFIGC--GNMGMAMIGGMINKNI-----VSSNQIICSDLNTANLKNASEK 48 (247)
T ss_dssp CCEEEECC--SHHHHHHHHHHHHTTS-----SCGGGEEEECSCHHHHHHHHHH
T ss_pred CeEEEECc--cHHHHHHHHHHHhCCC-----CCCCeEEEEeCCHHHHHHHHHH
Confidence 35666665 4566656555431000 0113799999999877766543
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=80.69 E-value=6.5 Score=25.20 Aligned_cols=89 Identities=8% Similarity=0.031 Sum_probs=53.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.|+=+| .|..+..+++.+.. .+. ++++|.+++.++.+. . .+.++.+|..+..
T Consensus 11 ~viI~G--~G~~G~~la~~L~~---------~g~-v~vid~~~~~~~~~~------~-------~~~~i~gd~~~~~~l~ 65 (234)
T 2aef_A 11 HVVICG--WSESTLECLRELRG---------SEV-FVLAEDENVRKKVLR------S-------GANFVHGDPTRVSDLE 65 (234)
T ss_dssp EEEEES--CCHHHHHHHHHSTT---------SEE-EEEESCGGGHHHHHH------T-------TCEEEESCTTCHHHHH
T ss_pred EEEEEC--CChHHHHHHHHHHh---------CCe-EEEEECCHHHHHHHh------c-------CCeEEEcCCCCHHHHH
Confidence 344455 47888888888752 245 999999887665543 1 4667777765432
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
..-..+|.|++...- ......+....+.+.|+..++.
T Consensus 66 ~a~i~~ad~vi~~~~~---d~~n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 66 KANVRGARAVIVDLES---DSETIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp HTTCTTCSEEEECCSC---HHHHHHHHHHHHHHCSSSEEEE
T ss_pred hcCcchhcEEEEcCCC---cHHHHHHHHHHHHHCCCCeEEE
Confidence 123468888875321 1222334455666777766654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.57 E-value=9.4 Score=24.76 Aligned_cols=103 Identities=14% Similarity=0.132 Sum_probs=61.2
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++|=.|++ +|.+...+++.+-. .+.+++.++.+....+...+.....+ ++.++..|+.+..
T Consensus 16 ~vlITGa~~~~giG~~ia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v 79 (271)
T 3ek2_A 16 RILLTGLLSNRSIAYGIAKACKR---------EGAELAFTYVGDRFKDRITEFAAEFG-------SELVFPCDVADDAQI 79 (271)
T ss_dssp EEEECCCCSTTSHHHHHHHHHHH---------TTCEEEEEESSGGGHHHHHHHHHHTT-------CCCEEECCTTCHHHH
T ss_pred EEEEeCCCCCCcHHHHHHHHHHH---------cCCCEEEEecchhhHHHHHHHHHHcC-------CcEEEECCCCCHHHH
Confidence 34555653 25566666665531 26789999988655555544444433 5778888877642
Q ss_pred ---C-----CCCCeeEEEEccccccc-----------c--C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ---I-----ESDSYSAYTIAFGIRNV-----------T--R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ---~-----~~~~~D~i~~~~~l~~~-----------~--~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ ..+..|+++.+.+.... + + ....++.+.+.|+++|.++++.
T Consensus 80 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 80 DALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp HHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 1 12478999987765321 1 1 1234455666777788877764
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=80.56 E-value=12 Score=26.18 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=51.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.||.++.+-|.++..+.. ..+++.+.-|...... +..+++. ... ... .....
T Consensus 48 ~~l~~n~~~g~~~~~~~~--------------~~~~~~~~~~~~~~~~----l~~~~~~------~~~-~~~---~~~~~ 99 (381)
T 3dmg_A 48 RALDLNPGVGWGSLPLEG--------------RMAVERLETSRAAFRC----LTASGLQ------ARL-ALP---WEAAA 99 (381)
T ss_dssp EEEESSCTTSTTTGGGBT--------------TBEEEEEECBHHHHHH----HHHTTCC------CEE-CCG---GGSCT
T ss_pred cEEEecCCCCccccccCC--------------CCceEEEeCcHHHHHH----HHHcCCC------ccc-cCC---ccCCc
Confidence 356666666655444432 3467777655544433 3344432 211 111 11234
Q ss_pred CCeeEEEEccccc-cccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIR-NVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~-~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..||+|+....-+ ........|.++.+.|+|||.++++-
T Consensus 100 ~~~d~v~~~~Pk~k~~~~~~~~l~~~~~~l~~g~~i~~~g 139 (381)
T 3dmg_A 100 GAYDLVVLALPAGRGTAYVQASLVAAARALRMGGRLYLAG 139 (381)
T ss_dssp TCEEEEEEECCGGGCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 6799998754422 11234667888899999999988753
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=80.52 E-value=10 Score=25.10 Aligned_cols=71 Identities=11% Similarity=0.060 Sum_probs=48.3
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----------
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---------- 78 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 78 (131)
|++-+...+++.+-+ .+.+|...|.+++.++...+.+...+ .++.++..|+.+..
T Consensus 17 as~GIG~aia~~la~---------~Ga~Vvi~~~~~~~~~~~~~~l~~~g------~~~~~~~~Dv~~~~~v~~~~~~~~ 81 (255)
T 4g81_D 17 SARGLGFAYAEGLAA---------AGARVILNDIRATLLAESVDTLTRKG------YDAHGVAFDVTDELAIEAAFSKLD 81 (255)
T ss_dssp CSSHHHHHHHHHHHH---------TTCEEEECCSCHHHHHHHHHHHHHTT------CCEEECCCCTTCHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHHHHHHH
Confidence 334455555555431 37899999999998888777776654 26888888876632
Q ss_pred CCCCCeeEEEEccccc
Q psy890 79 IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~ 94 (131)
-.-+..|+++.+.+..
T Consensus 82 ~~~G~iDiLVNNAG~~ 97 (255)
T 4g81_D 82 AEGIHVDILINNAGIQ 97 (255)
T ss_dssp HTTCCCCEEEECCCCC
T ss_pred HHCCCCcEEEECCCCC
Confidence 1235789999987654
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=80.46 E-value=10 Score=25.05 Aligned_cols=71 Identities=11% Similarity=-0.011 Sum_probs=46.8
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--------
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-------- 79 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------- 79 (131)
.|+|.+...+++.+-. .+.+|+.++.+++..+...+.+...+ .++.++..|+.+...
T Consensus 40 Gas~GIG~aia~~la~---------~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~Dv~~~~~~~~~~~~~ 104 (275)
T 4imr_A 40 GSSRGIGAAIAEGLAG---------AGAHVILHGVKPGSTAAVQQRIIASG------GTAQELAGDLSEAGAGTDLIERA 104 (275)
T ss_dssp TCSSHHHHHHHHHHHH---------TTCEEEEEESSTTTTHHHHHHHHHTT------CCEEEEECCTTSTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---------CCCEEEEEcCCHHHHHHHHHHHHhcC------CeEEEEEecCCCHHHHHHHHHHH
Confidence 3445566666665531 36789999998877777666665433 278888888876430
Q ss_pred -CCCCeeEEEEcccc
Q psy890 80 -ESDSYSAYTIAFGI 93 (131)
Q Consensus 80 -~~~~~D~i~~~~~l 93 (131)
..+..|+++.+.+.
T Consensus 105 ~~~g~iD~lvnnAg~ 119 (275)
T 4imr_A 105 EAIAPVDILVINASA 119 (275)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCCCEEEECCCC
Confidence 11468999987765
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.19 E-value=5.1 Score=26.04 Aligned_cols=78 Identities=9% Similarity=-0.040 Sum_probs=48.6
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+ +|.+...+++.+-. .+.+|+.++.+++..+...+.+....... .++.++..|+.+..
T Consensus 10 ~lVTGa-s~GIG~aia~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~ 76 (250)
T 3nyw_A 10 AIITGA-SQGIGAVIAAGLAT---------DGYRVVLIARSKQNLEKVHDEIMRSNKHV---QEPIVLPLDITDCTKADT 76 (250)
T ss_dssp EEEEST-TSHHHHHHHHHHHH---------HTCEEEEEESCHHHHHHHHHHHHHHCTTS---CCCEEEECCTTCHHHHHH
T ss_pred EEEECC-CcHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHhcccc---CcceEEeccCCCHHHHHH
Confidence 344444 44455555555431 25789999999988887776665432110 16788888877642
Q ss_pred -C-----CCCCeeEEEEcccc
Q psy890 79 -I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l 93 (131)
+ ..+..|+++.+.+.
T Consensus 77 ~~~~~~~~~g~iD~lvnnAg~ 97 (250)
T 3nyw_A 77 EIKDIHQKYGAVDILVNAAAM 97 (250)
T ss_dssp HHHHHHHHHCCEEEEEECCCC
T ss_pred HHHHHHHhcCCCCEEEECCCc
Confidence 1 11468999987765
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=80.17 E-value=7.5 Score=26.59 Aligned_cols=85 Identities=12% Similarity=0.074 Sum_probs=51.7
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-+|+ |.|..+..+++.. +.+++++ .+++-++.+++. +. .. +. +..+..
T Consensus 153 ~VlV~Ga~g~iG~~~~q~a~~~------------Ga~Vi~~-~~~~~~~~~~~l----Ga------~~--i~-~~~~~~~ 206 (343)
T 3gaz_A 153 TVLIQGGGGGVGHVAIQIALAR------------GARVFAT-ARGSDLEYVRDL----GA------TP--ID-ASREPED 206 (343)
T ss_dssp EEEEETTTSHHHHHHHHHHHHT------------TCEEEEE-ECHHHHHHHHHH----TS------EE--EE-TTSCHHH
T ss_pred EEEEecCCCHHHHHHHHHHHHC------------CCEEEEE-eCHHHHHHHHHc----CC------CE--ec-cCCCHHH
Confidence 4666663 4566677777664 4689999 787766665432 21 11 21 111110
Q ss_pred -----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.....+|+|+-..+- ..+....+.|+++|+++.+
T Consensus 207 ~~~~~~~~~g~D~vid~~g~-------~~~~~~~~~l~~~G~iv~~ 245 (343)
T 3gaz_A 207 YAAEHTAGQGFDLVYDTLGG-------PVLDASFSAVKRFGHVVSC 245 (343)
T ss_dssp HHHHHHTTSCEEEEEESSCT-------HHHHHHHHHEEEEEEEEES
T ss_pred HHHHHhcCCCceEEEECCCc-------HHHHHHHHHHhcCCeEEEE
Confidence 123469999875441 3577888899999998864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 131 | ||||
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-06 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 2e-06 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 1e-05 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 2e-05 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-05 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 3e-04 | |
| d1i1na_ | 224 | c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf | 4e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 5e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 6e-04 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 0.001 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 0.002 | |
| d1m6ya2 | 192 | c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransf | 0.002 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 0.004 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 0.004 |
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.3 bits (101), Expect = 2e-06
Identities = 12/95 (12%), Positives = 22/95 (23%), Gaps = 5/95 (5%)
Query: 31 EHCAPHVTVADINRAMLDVGEQRARDLFKV----PVPNPRLRFLEANAEELPIESDSYSA 86
H + E R+ K + + +
Sbjct: 172 ATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANT 231
Query: 87 YTI-AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
I +D L E + +K GGR + +
Sbjct: 232 SVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSK 266
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.1 bits (101), Expect = 2e-06
Identities = 10/97 (10%), Positives = 28/97 (28%), Gaps = 7/97 (7%)
Query: 31 EHCAPHVTVADINRAMLDVGEQRARDL-----FKVPVPNPRLRFLEANAEELPIESDSYS 85
E +I D+ + +L N L+ + + ++
Sbjct: 237 ECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIP 296
Query: 86 AYTIAF--GIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
+ ++K + + + K G + + L+
Sbjct: 297 QCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLK 333
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 40.7 bits (94), Expect = 1e-05
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ T + + + + KA+ E RVLK GRFL ++ + +L
Sbjct: 83 FDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDE 130
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.4 bits (93), Expect = 2e-05
Identities = 8/94 (8%), Positives = 26/94 (27%), Gaps = 4/94 (4%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEA----NAEELPIESDSYSAYTIAF 91
+ V + + + ++ + + + + E + +
Sbjct: 72 NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQ 131
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125
+ V I L + +L + L + S +
Sbjct: 132 MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS 165
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 39.9 bits (92), Expect = 3e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
D Y + ++T + L + +K GG+ +C E
Sbjct: 93 DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFE 131
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 36.5 bits (84), Expect = 3e-04
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 7/83 (8%)
Query: 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGIRN 95
V + + + + P N R + ++ + + S + +
Sbjct: 123 QVISYEQRADHAEHARRNVSGCYGQPPDN--WRLVVSDLADSELPDGSVDRAVL-----D 175
Query: 96 VTRIDKALSEAYRVLKPGGRFLC 118
+ + L R+L GG +
Sbjct: 176 MLAPWEVLDAVSRLLVAGGVLMV 198
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 4e-04
Identities = 16/87 (18%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 32 HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAF 91
C V D + ++D R + + R++ + + E Y A +
Sbjct: 99 GCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIHVGA 158
Query: 92 GIRNVTRIDKALSEAYRVLKPGGRFLC 118
V + LKPGGR +
Sbjct: 159 AAPVVPQ------ALIDQLKPGGRLIL 179
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 36.2 bits (82), Expect = 5e-04
Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 5/98 (5%)
Query: 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSAYTIAFGI 93
V D+ +L V V + E++P + + T
Sbjct: 37 VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDA-----EQMPFTDERFHIVTCRIAA 91
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
+ +SEAYRVLK GG+ L ++ S N
Sbjct: 92 HHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDV 129
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.8 bits (81), Expect = 6e-04
Identities = 13/96 (13%), Positives = 30/96 (31%), Gaps = 1/96 (1%)
Query: 29 LSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPN-PRLRFLEANAEELPIESDSYSAY 87
+ E + + N + A +P + + + Y Y
Sbjct: 71 VQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130
Query: 88 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
++ + + + + A+R+LKPGG +
Sbjct: 131 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLTS 166
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 34.7 bits (79), Expect = 0.001
Identities = 11/94 (11%), Positives = 26/94 (27%), Gaps = 12/94 (12%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESDSYSA 86
L+ V + + E + ++R + + +
Sbjct: 121 LARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS----------EGFDE 170
Query: 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120
+ +V + + + LK GGRF +
Sbjct: 171 KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC 204
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.8 bits (79), Expect = 0.002
Identities = 14/98 (14%), Positives = 30/98 (30%), Gaps = 11/98 (11%)
Query: 29 LSEHCAP--HVTVADINRAMLDVGEQRARDLFKVPVPN------PRLRFLEANAEELPIE 80
LS+ V ++ + D+ ++ + + + F+ + +
Sbjct: 116 LSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175
Query: 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118
S + +A + N L Y LK GG
Sbjct: 176 IKSLTFDAVALDMLNP---HVTLPVFYPHLKHGGVCAV 210
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Score = 34.4 bits (78), Expect = 0.002
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNSMLQW 131
S Y + R + + + L +A +L PGGR + + F + + +++
Sbjct: 104 GVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKE 152
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 33.4 bits (75), Expect = 0.004
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 94 RNVTRIDKALSEAYRVLKPGGRFLC 118
+ + AL +++PGG +
Sbjct: 148 GDQSEHRLALKNIASMVRPGGLLVI 172
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 33.4 bits (75), Expect = 0.004
Identities = 8/36 (22%), Positives = 12/36 (33%)
Query: 88 TIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123
T+ I ++ R KPGG L +
Sbjct: 102 TVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 131 | |||
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.93 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.93 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.9 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.89 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.88 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.87 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.87 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.86 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.86 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.85 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.84 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.83 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.83 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.8 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.8 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.79 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.78 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.77 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.77 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.77 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.77 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.76 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.76 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.75 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.75 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.75 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.75 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.74 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.74 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.73 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.72 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.7 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.69 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.69 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.68 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.67 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.66 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.66 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.65 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.63 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.63 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.63 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.6 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.59 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.59 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.53 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.5 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.48 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.48 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.48 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.46 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.44 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.42 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.42 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.4 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.39 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.35 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.33 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.31 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.3 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.29 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.27 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.25 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.24 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.23 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.21 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.18 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.15 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.11 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.03 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.98 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.96 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.96 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.95 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.92 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.91 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.89 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.89 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.89 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.86 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.83 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.73 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.62 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.57 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.56 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.55 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.53 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.5 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.49 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.47 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.44 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.38 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.27 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 98.11 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 98.07 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.77 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.75 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.24 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.06 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 96.81 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.81 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 96.72 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.68 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.66 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.59 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.52 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.37 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.33 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 96.22 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.21 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.15 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.95 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.7 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.65 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 95.55 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.3 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 95.22 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.18 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 94.98 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.95 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 94.92 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.52 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.04 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 93.82 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 93.78 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.65 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 93.31 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.22 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.21 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.12 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 92.78 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 92.22 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 92.22 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 92.12 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 92.04 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 91.87 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.56 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 91.34 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 90.98 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.93 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.57 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 89.72 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 89.5 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 89.37 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.04 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 88.85 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 88.74 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 87.67 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 87.1 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 86.96 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 86.93 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 86.87 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 85.89 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 84.94 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 84.88 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 84.69 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 84.35 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 83.88 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 83.83 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 83.77 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.57 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 83.04 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 82.84 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 82.22 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 82.17 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 81.69 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 81.61 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 81.56 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 81.51 |
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.93 E-value=8.1e-26 Score=148.82 Aligned_cols=109 Identities=27% Similarity=0.384 Sum_probs=99.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++. ..+++++|+|+.|++.|+++....+.. ++.++.+|..+++++
T Consensus 18 ~rILDiGcGtG~~~~~la~~-------------~~~v~gvD~S~~~l~~A~~~~~~~~~~-----~~~~~~~d~~~~~~~ 79 (234)
T d1xxla_ 18 HRVLDIGAGAGHTALAFSPY-------------VQECIGVDATKEMVEVASSFAQEKGVE-----NVRFQQGTAESLPFP 79 (234)
T ss_dssp CEEEEESCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHHTCC-----SEEEEECBTTBCCSC
T ss_pred CEEEEeCCcCcHHHHHHHHh-------------CCeEEEEeCChhhhhhhhhhhcccccc-----ccccccccccccccc
Confidence 47999999999999999876 468999999999999999998877654 899999999999999
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCcc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNNS 127 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~~ 127 (131)
+++||+|++..++++++++..++.++.++|||||++++.++..++..
T Consensus 80 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~~ 126 (234)
T d1xxla_ 80 DDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDP 126 (234)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSH
T ss_pred ccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCCH
Confidence 99999999999999999999999999999999999999888766544
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.93 E-value=1.3e-25 Score=147.24 Aligned_cols=108 Identities=23% Similarity=0.346 Sum_probs=97.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||+|.++..+++. +.+++++|+|+.|++.|+++....+.. +++++..|..+++++
T Consensus 17 ~rVLDiGcG~G~~~~~l~~~-------------~~~v~gvD~s~~~i~~A~~~~~~~~~~-----~i~~~~~d~~~l~~~ 78 (231)
T d1vl5a_ 17 EEVLDVATGGGHVANAFAPF-------------VKKVVAFDLTEDILKVARAFIEGNGHQ-----QVEYVQGDAEQMPFT 78 (231)
T ss_dssp CEEEEETCTTCHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCC-CCCSC
T ss_pred CEEEEecccCcHHHHHHHHh-------------CCEEEEEECCHHHHhhhhhcccccccc-----ccccccccccccccc
Confidence 47999999999999988875 468999999999999999998876654 899999999999998
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
.++||+|++..+++|++++.+++.++.++|||||++++.+++.+..
T Consensus 79 ~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~ 124 (231)
T d1vl5a_ 79 DERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN 124 (231)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS
T ss_pred ccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCC
Confidence 9999999999999999999999999999999999999988776554
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.90 E-value=1.6e-23 Score=141.18 Aligned_cols=108 Identities=17% Similarity=0.039 Sum_probs=98.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++.. +.+|+++|+|+.+++.++++....++.+ +++++.+|+.+++++
T Consensus 69 ~~vLDiGcG~G~~~~~la~~~------------~~~v~gvD~s~~~i~~a~~~~~~~gl~~----~v~~~~~d~~~l~~~ 132 (282)
T d2o57a1 69 AKGLDLGAGYGGAARFLVRKF------------GVSIDCLNIAPVQNKRNEEYNNQAGLAD----NITVKYGSFLEIPCE 132 (282)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHHTCTT----TEEEEECCTTSCSSC
T ss_pred CEEEEeCCCCcHHHhhhhccC------------CcEEEEEeccchhhhhhhcccccccccc----ccccccccccccccc
Confidence 479999999999999998764 4689999999999999999998887765 899999999999999
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.++||+|++..++++++++..++.++.++|||||++++.++...
T Consensus 133 ~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~~~~~~~~ 176 (282)
T d2o57a1 133 DNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKE 176 (282)
T ss_dssp TTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEEC
T ss_pred ccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEEEEEeecC
Confidence 99999999999999999999999999999999999999876543
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.89 E-value=6e-23 Score=133.66 Aligned_cols=102 Identities=22% Similarity=0.341 Sum_probs=90.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++|+|+|++|++.++++....+. ++.++..|+.+++++.
T Consensus 40 ~ILDiGcG~G~~~~~la~~-------------~~~v~giD~S~~~i~~ak~~~~~~~~------~~~~~~~d~~~l~~~~ 100 (226)
T d1ve3a1 40 KVLDLACGVGGFSFLLEDY-------------GFEVVGVDISEDMIRKAREYAKSRES------NVEFIVGDARKLSFED 100 (226)
T ss_dssp EEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEECCTTSCCSCT
T ss_pred EEEEECCCcchhhhhHhhh-------------hcccccccccccchhhhhhhhccccc------cccccccccccccccC
Confidence 6999999999999988875 56899999999999999998876542 6788899999999989
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++..++++++ ++.+++.++.++|||||++++...+
T Consensus 101 ~~fD~I~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~lii~~~~ 143 (226)
T d1ve3a1 101 KTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTD 143 (226)
T ss_dssp TCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred cCceEEEEecchhhCChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence 9999999999999986 6778999999999999999876543
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.4e-22 Score=134.01 Aligned_cols=105 Identities=18% Similarity=0.116 Sum_probs=94.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||+|..+..+++.. +.+++|+|+|+.+++.++++....++.+ +++++..|+.++ ..
T Consensus 35 ~~VLDiGCG~G~~~~~la~~~------------~~~v~GvD~s~~~~~~ar~~~~~~gl~~----~v~~~~~d~~~~-~~ 97 (245)
T d1nkva_ 35 TRILDLGSGSGEMLCTWARDH------------GITGTGIDMSSLFTAQAKRRAEELGVSE----RVHFIHNDAAGY-VA 97 (245)
T ss_dssp CEEEEETCTTCHHHHHHHHHT------------CCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEESCCTTC-CC
T ss_pred CEEEEEcCCCCHHHHHHHHhc------------CCEEEEEecccchhhHHHHHHHHhhccc----cchhhhhHHhhc-cc
Confidence 479999999999999888763 4689999999999999999998888765 899999999887 45
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
+++||+|++..++++++++..++.++++.|||||++++.+..
T Consensus 98 ~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~ 139 (245)
T d1nkva_ 98 NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPY 139 (245)
T ss_dssp SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEE
T ss_pred cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEecc
Confidence 688999999999999999999999999999999999997654
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.7e-22 Score=130.91 Aligned_cols=107 Identities=20% Similarity=0.157 Sum_probs=93.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++... ..+++++|+|+.|++.|++++...+.. ++++++.|+.+++++.
T Consensus 63 ~vLDiGcG~G~~~~~l~~~~------------~~~v~~vD~s~~~l~~ak~~~~~~~~~-----~~~f~~~d~~~~~~~~ 125 (222)
T d2ex4a1 63 CALDCGAGIGRITKRLLLPL------------FREVDMVDITEDFLVQAKTYLGEEGKR-----VRNYFCCGLQDFTPEP 125 (222)
T ss_dssp EEEEETCTTTHHHHHTTTTT------------CSEEEEEESCHHHHHHHHHHTGGGGGG-----EEEEEECCGGGCCCCS
T ss_pred EEEEeccCCCHhhHHHHHhc------------CCEEEEeecCHHHhhcccccccccccc-----cccccccccccccccc
Confidence 58999999999998876552 458999999999999999998776543 7899999999998888
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
++||+|++..+++++++. ..++.++++.|+|||.+++.+.....
T Consensus 126 ~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~ 171 (222)
T d2ex4a1 126 DSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE 171 (222)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS
T ss_pred ccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccc
Confidence 999999999999999764 58999999999999999998766544
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.87 E-value=9.8e-22 Score=132.43 Aligned_cols=105 Identities=21% Similarity=0.264 Sum_probs=92.9
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++..+ .+.+++++|+|+.+++.++++....+. ++++...|+.+++++
T Consensus 29 ~~ILDiGcG~G~~~~~la~~~~----------~~~~v~giD~s~~~l~~a~~~~~~~~~------~~~f~~~d~~~~~~~ 92 (281)
T d2gh1a1 29 VHIVDYGCGYGYLGLVLMPLLP----------EGSKYTGIDSGETLLAEARELFRLLPY------DSEFLEGDATEIELN 92 (281)
T ss_dssp CEEEEETCTTTHHHHHHTTTSC----------TTCEEEEEECCHHHHHHHHHHHHSSSS------EEEEEESCTTTCCCS
T ss_pred CEEEEecCcCCHHHHHHHHhCC----------CCCEEEEEecchhHhhhhhcccccccc------ccccccccccccccc
Confidence 3699999999999999988765 357899999999999999999876542 789999999888765
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||+|++.+++++++++..+++++.+.|||||.+++.+..
T Consensus 93 -~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 93 -DKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp -SCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred -CCceEEEEehhhhcCCCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 57999999999999999999999999999999999988743
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.86 E-value=2.1e-21 Score=129.13 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=90.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..++... ..+|+++|+|+.|++.|+++..... ++++++.|+.+++++.
T Consensus 96 ~vLD~GcG~G~~t~~ll~~~------------~~~v~~vD~s~~~l~~a~~~~~~~~-------~~~~~~~d~~~~~~~~ 156 (254)
T d1xtpa_ 96 RALDCGAGIGRITKNLLTKL------------YATTDLLEPVKHMLEEAKRELAGMP-------VGKFILASMETATLPP 156 (254)
T ss_dssp EEEEETCTTTHHHHHTHHHH------------CSEEEEEESCHHHHHHHHHHTTTSS-------EEEEEESCGGGCCCCS
T ss_pred eEEEecccCChhhHHHHhhc------------CceEEEEcCCHHHHHhhhccccccc-------cceeEEccccccccCC
Confidence 69999999999999887763 3579999999999999998876544 7899999999998888
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
++||+|++.++++|+++. .+++.++++.|+|||++++.+....
T Consensus 157 ~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~ 201 (254)
T d1xtpa_ 157 NTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCST 201 (254)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC-
T ss_pred CccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCC
Confidence 899999999999999764 5889999999999999999775443
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.86 E-value=4e-21 Score=125.51 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=91.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++.... ++.+++|+|+|+.|++.|+++........ ++.+...|..+.+ .
T Consensus 42 ~vLDlGCGtG~~~~~l~~~~~~---------~~~~v~giD~S~~ml~~A~~~~~~~~~~~----~~~~~~~d~~~~~--~ 106 (225)
T d1im8a_ 42 NVYDLGCSRGAATLSARRNINQ---------PNVKIIGIDNSQPMVERCRQHIAAYHSEI----PVEILCNDIRHVE--I 106 (225)
T ss_dssp EEEEESCTTCHHHHHHHHTCCC---------SSCEEEEECSCHHHHHHHHHHHHTSCCSS----CEEEECSCTTTCC--C
T ss_pred EEEEeccchhhHHHHHHHhhcC---------CCCceEEeCCCHHHHHHHHHHhHhhcccc----hhhhccchhhccc--c
Confidence 6999999999999999886431 37899999999999999999987665443 6777887776654 4
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
..+|+|++..++|+++ ++.++++++++.|||||.+++.+...+..
T Consensus 107 ~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~ 153 (225)
T d1im8a_ 107 KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFED 153 (225)
T ss_dssp CSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSS
T ss_pred ccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeeccccccccc
Confidence 6789999999999885 78899999999999999999998776544
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.85 E-value=2.1e-21 Score=127.70 Aligned_cols=95 Identities=27% Similarity=0.312 Sum_probs=82.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++|+|+|+.|++.++++.. ..++.+|+.+++++.
T Consensus 45 ~vLDiGcG~G~~~~~l~~~-------------~~~v~giD~s~~~l~~a~~~~~-----------~~~~~~~~~~l~~~~ 100 (246)
T d2avna1 45 RVLDLGGGTGKWSLFLQER-------------GFEVVLVDPSKEMLEVAREKGV-----------KNVVEAKAEDLPFPS 100 (246)
T ss_dssp EEEEETCTTCHHHHHHHTT-------------TCEEEEEESCHHHHHHHHHHTC-----------SCEEECCTTSCCSCT
T ss_pred EEEEECCCCchhccccccc-------------ceEEEEeecccccccccccccc-----------ccccccccccccccc
Confidence 6899999999999988765 5689999999999999987642 235678888888888
Q ss_pred CCeeEEEEc-cccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIA-FGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~-~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|++. .++++++++..++.++.++|||||++++..
T Consensus 101 ~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii~~ 140 (246)
T d2avna1 101 GAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIATV 140 (246)
T ss_dssp TCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEEEE
Confidence 999999985 578999999999999999999999998864
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=6.6e-21 Score=125.94 Aligned_cols=98 Identities=23% Similarity=0.361 Sum_probs=84.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++|+|+|+.|++.|+++.+..+. ++.++.+|+.+++++
T Consensus 44 ~iLDiGcGtG~~~~~l~~~-------------~~~v~gvD~s~~mi~~a~~~~~~~~~------~i~~~~~d~~~l~~~- 103 (251)
T d1wzna1 44 RVLDLACGTGIPTLELAER-------------GYEVVGLDLHEEMLRVARRKAKERNL------KIEFLQGDVLEIAFK- 103 (251)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTC------CCEEEESCGGGCCCC-
T ss_pred EEEEeCCCCCccchhhccc-------------ceEEEEEeeccccccccccccccccc------cchheehhhhhcccc-
Confidence 5999999999999988875 56899999999999999999876542 789999999998876
Q ss_pred CCeeEEEEcc-ccccc--cCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAF-GIRNV--TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~-~l~~~--~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
++||+|++.+ +++++ +++.++|.+++++|||||++++.
T Consensus 104 ~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~ 144 (251)
T d1wzna1 104 NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITD 144 (251)
T ss_dssp SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEE
Confidence 5899999975 45555 46779999999999999999773
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=1.7e-20 Score=120.42 Aligned_cols=103 Identities=17% Similarity=0.042 Sum_probs=89.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++++|+|+.+++.++++....+.. ++.+...|+...+. +
T Consensus 33 rvLDiGcG~G~~~~~la~~-------------g~~v~gvD~s~~~l~~a~~~~~~~~~~-----~~~~~~~d~~~~~~-~ 93 (198)
T d2i6ga1 33 RTLDLGCGNGRNSLYLAAN-------------GYDVTAWDKNPASMANLERIKAAEGLD-----NLQTDLVDLNTLTF-D 93 (198)
T ss_dssp EEEEETCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEECCTTTCCC-C
T ss_pred cEEEECCCCCHHHHHHHHH-------------hhhhccccCcHHHHHHHHHHhhhcccc-----chhhhheecccccc-c
Confidence 5899999999999999875 578999999999999999988877654 78999999888765 5
Q ss_pred CCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++ +..+++.++.+.|+|||++++..+..
T Consensus 94 ~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~ 137 (198)
T d2i6ga1 94 GEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMD 137 (198)
T ss_dssp CCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred ccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 7899999999999986 45689999999999999999876553
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.83 E-value=2.4e-20 Score=123.69 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=86.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-E 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~ 80 (131)
+|||+|||+|..+..+++. ...+++|+|+|+.|++.|+++........ ++.+...|....++ .
T Consensus 27 ~VLDlGCG~G~~~~~~~~~------------~~~~v~GiD~S~~~l~~A~~r~~~~~~~~----~v~f~~~D~~~~~~~~ 90 (252)
T d1ri5a_ 27 SVLDLGCGKGGDLLKYERA------------GIGEYYGVDIAEVSINDARVRARNMKRRF----KVFFRAQDSYGRHMDL 90 (252)
T ss_dssp EEEEETCTTTTTHHHHHHH------------TCSEEEEEESCHHHHHHHHHHHHTSCCSS----EEEEEESCTTTSCCCC
T ss_pred EEEEecccCcHHHHHHHHc------------CCCeEEEecCCHHHHHHHHHHHHhcCCCc----ceEEEEcchhhhcccc
Confidence 6999999999998888775 24589999999999999999987765443 79999999876654 4
Q ss_pred CCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||+|++.+++|++. +...++.++.+.|+|||++++..
T Consensus 91 ~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~ 134 (252)
T d1ri5a_ 91 GKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV 134 (252)
T ss_dssp SSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEe
Confidence 67899999999999874 45688999999999999998754
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=2.5e-20 Score=120.16 Aligned_cols=93 Identities=25% Similarity=0.305 Sum_probs=82.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+ .+++|+|+|+.+++.++++ ++.++..|+.++++++
T Consensus 39 ~vLDiGcG~G~~~~~~-----------------~~~~giD~s~~~~~~a~~~------------~~~~~~~d~~~l~~~~ 89 (208)
T d1vlma_ 39 RGVEIGVGTGRFAVPL-----------------KIKIGVEPSERMAEIARKR------------GVFVLKGTAENLPLKD 89 (208)
T ss_dssp CEEEETCTTSTTHHHH-----------------TCCEEEESCHHHHHHHHHT------------TCEEEECBTTBCCSCT
T ss_pred eEEEECCCCccccccc-----------------ceEEEEeCChhhccccccc------------cccccccccccccccc
Confidence 6999999999876544 1358999999999998753 5789999999999888
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++..++++++++..++.++.++|+|||.+++.+...
T Consensus 90 ~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l~i~~~~~ 131 (208)
T d1vlma_ 90 ESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGIVDR 131 (208)
T ss_dssp TCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred ccccccccccccccccccccchhhhhhcCCCCceEEEEecCC
Confidence 999999999999999999999999999999999999877543
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.83 E-value=3.1e-20 Score=121.27 Aligned_cols=96 Identities=16% Similarity=0.282 Sum_probs=84.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +.+++++|+|+++++.++++... ++.++..++.+.+. +
T Consensus 23 ~VLDiGcG~G~~~~~l~~~-------------g~~v~giD~s~~~i~~a~~~~~~---------~~~~~~~~~~~~~~-~ 79 (225)
T d2p7ia1 23 NLLELGSFKGDFTSRLQEH-------------FNDITCVEASEEAISHAQGRLKD---------GITYIHSRFEDAQL-P 79 (225)
T ss_dssp CEEEESCTTSHHHHHHTTT-------------CSCEEEEESCHHHHHHHHHHSCS---------CEEEEESCGGGCCC-S
T ss_pred cEEEEeCCCcHHHHHHHHc-------------CCeEEEEeCcHHHhhhhhccccc---------cccccccccccccc-c
Confidence 6999999999999888765 46799999999999999877532 78899999888765 4
Q ss_pred CCeeEEEEccccccccCHHHHHHHHH-HhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAY-RVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~-~~L~p~G~l~~~~ 120 (131)
++||+|++..+++|++++...+.++. ++|+|||.+++.-
T Consensus 80 ~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~i~~ 119 (225)
T d2p7ia1 80 RRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 119 (225)
T ss_dssp SCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred cccccccccceeEecCCHHHHHHHHHHHhcCCCceEEEEe
Confidence 78999999999999999999999998 7899999998864
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=3.4e-20 Score=122.42 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=82.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++. +.+++|+|+|++|++.|+++.+..+. +++++++|+..++..
T Consensus 40 ~vLDiGCG~G~~~~~l~~~-------------g~~v~GvD~S~~ml~~A~~~~~~~~~------~v~~~~~d~~~~~~~- 99 (246)
T d1y8ca_ 40 DYLDLACGTGNLTENLCPK-------------FKNTWAVDLSQEMLSEAENKFRSQGL------KPRLACQDISNLNIN- 99 (246)
T ss_dssp EEEEETCTTSTTHHHHGGG-------------SSEEEEECSCHHHHHHHHHHHHHTTC------CCEEECCCGGGCCCS-
T ss_pred eEEEEeCcCCHHHHHHHHh-------------CCccEeeccchhhhhhccccccccCc------cceeeccchhhhccc-
Confidence 5999999999999999886 56899999999999999998876552 789999999887654
Q ss_pred CCeeEEEEc-ccccccc---CHHHHHHHHHHhccCCcEEEE
Q psy890 82 DSYSAYTIA-FGIRNVT---RIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 82 ~~~D~i~~~-~~l~~~~---~~~~~l~~~~~~L~p~G~l~~ 118 (131)
++||+|+|. .+++++. ++.+++++++++|+|||.+++
T Consensus 100 ~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i~ 140 (246)
T d1y8ca_ 100 RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140 (246)
T ss_dssp CCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence 689999986 4555554 667899999999999999876
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.80 E-value=3e-19 Score=118.50 Aligned_cols=106 Identities=20% Similarity=0.181 Sum_probs=90.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|.++..+++..+ ..+++++|. +++++.++++....+..+ +++++..|+.+. . .
T Consensus 83 ~VLDvGcG~G~~~~~la~~~p-----------~~~~~~~D~-~~~~~~a~~~~~~~~~~~----rv~~~~~D~~~~-~-~ 144 (253)
T d1tw3a2 83 HVLDVGGGKGGFAAAIARRAP-----------HVSATVLEM-AGTVDTARSYLKDEGLSD----RVDVVEGDFFEP-L-P 144 (253)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-TTHHHHHHHHHHHTTCTT----TEEEEECCTTSC-C-S
T ss_pred EEEEeCCCCCHHHHHHHHhcc-----------eeEEEEccC-HHHHHHHHHHHHHhhccc----chhhccccchhh-c-c
Confidence 699999999999999999865 789999998 678999999998877765 899999997652 2 2
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
.+||+|++.+++|++++. .++|+++++.|||||++++.|...+.
T Consensus 145 ~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~ 190 (253)
T d1tw3a2 145 RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH 190 (253)
T ss_dssp SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred cchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 569999999999999765 47899999999999999999876544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=2.9e-19 Score=119.90 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=87.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce--eEEeccccc---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL--RFLEANAEE--- 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~--- 76 (131)
+|||+|||+|..+..+++.+....++ ....++++|+|+.|++.+++++....... ++ .+...++..
T Consensus 43 ~VLDiGcG~G~~~~~ll~~l~~~~~~-----~~~~~~~vD~s~~~l~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 113 (280)
T d1jqea_ 43 KILSIGGGAGEIDLQILSKVQAQYPG-----VCINNEVVEPSAEQIAKYKELVAKISNLE----NVKFAWHKETSSEYQS 113 (280)
T ss_dssp EEEEETCTTSHHHHHHHHHHHHHSTT-----CEEEEEEECCCHHHHHHHHHHHTTCCSCT----TEEEEEECSCHHHHHH
T ss_pred eEEEEcCCCCHHHHHHHHHhhhhccC-----CceEEEEEeCcHHHHHHHHHHHhhccccc----cccccchhhhhhhhcc
Confidence 69999999999999888775321111 24578999999999999999876543221 33 445554432
Q ss_pred ---CCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 77 ---LPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 77 ---~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+.+.++||+|++.+++++++++..++.++.++|+|||.++++..+..
T Consensus 114 ~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~ 164 (280)
T d1jqea_ 114 RMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS 164 (280)
T ss_dssp HHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT
T ss_pred hhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCc
Confidence 235678999999999999999999999999999999999988876543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=1.8e-19 Score=120.46 Aligned_cols=94 Identities=19% Similarity=0.225 Sum_probs=82.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|..+..+++..+ ..+++++|+|+.+++.++++.. ++.+..+|+.++++++
T Consensus 87 ~iLDiGcG~G~~~~~l~~~~~-----------~~~~~giD~s~~~~~~a~~~~~----------~~~~~~~d~~~l~~~~ 145 (268)
T d1p91a_ 87 AVLDIGCGEGYYTHAFADALP-----------EITTFGLDVSKVAIKAAAKRYP----------QVTFCVASSHRLPFSD 145 (268)
T ss_dssp EEEEETCTTSTTHHHHHHTCT-----------TSEEEEEESCHHHHHHHHHHCT----------TSEEEECCTTSCSBCT
T ss_pred EEEEeCCCCcHHHHHHHHHCC-----------CCEEEEecchHhhhhhhhcccc----------cccceeeehhhccCCC
Confidence 699999999999999988764 6789999999999999887642 7899999999999999
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
++||+|++.+..++ +.++.|+|||||++++...+.
T Consensus 146 ~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 146 TSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp TCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred CCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 99999999887765 467899999999999987654
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.79 E-value=2e-19 Score=114.51 Aligned_cols=112 Identities=9% Similarity=0.012 Sum_probs=88.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCC-------CCCCceeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVP-------VPNPRLRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~d 73 (131)
.+|||+|||+|+.+..+++. +.+|+|+|+|+.|+..++++.+...... .......++..|
T Consensus 22 ~rvLd~GCG~G~~a~~la~~-------------G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 88 (201)
T d1pjza_ 22 ARVLVPLCGKSQDMSWLSGQ-------------GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 88 (201)
T ss_dssp CEEEETTTCCSHHHHHHHHH-------------CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred CEEEEecCcCCHHHHHHHHc-------------CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceeccc
Confidence 37999999999999999986 6899999999999999999876432100 001245677777
Q ss_pred cccCC-CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 74 AEELP-IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 74 ~~~~~-~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
...++ .....||+|++..++++++ +....+.++.+.|||||++++..+....
T Consensus 89 ~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~ 143 (201)
T d1pjza_ 89 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ 143 (201)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred ccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 77664 3346799999999999886 4678999999999999998887666544
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.78 E-value=2e-18 Score=110.30 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=86.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ..+++++|+|+.++..+++++...+... .++++...|..+ +.++
T Consensus 55 ~VLDiGcG~G~~~~~la~~-------------~~~v~~iD~s~~~i~~a~~n~~~~~l~~---~~i~~~~~d~~~-~~~~ 117 (194)
T d1dusa_ 55 DILDLGCGYGVIGIALADE-------------VKSTTMADINRRAIKLAKENIKLNNLDN---YDIRVVHSDLYE-NVKD 117 (194)
T ss_dssp EEEEETCTTSHHHHHHGGG-------------SSEEEEEESCHHHHHHHHHHHHHTTCTT---SCEEEEECSTTT-TCTT
T ss_pred eEEEEeecCChhHHHHHhh-------------ccccceeeeccccchhHHHHHHHhCCcc---ceEEEEEcchhh-hhcc
Confidence 6999999999999988775 4689999999999999999988776553 268999999876 4567
Q ss_pred CCeeEEEEccccccccC-HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTR-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++||+|+++..++...+ .+.++.++.++|+|||.+++..
T Consensus 118 ~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 118 RKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp SCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 89999999988877665 4788999999999999987754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.77 E-value=1.5e-18 Score=115.40 Aligned_cols=102 Identities=13% Similarity=0.109 Sum_probs=89.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~ 78 (131)
++|||+|||+|.++..+++.+. +..+++++|+++++++.|+++++.. ...+ ++.+...|+.+.+
T Consensus 98 ~~VLE~G~GsG~lt~~La~~vg----------p~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~----nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 98 ARVLEAGAGSGALTLSLLRAVG----------PAGQVISYEQRADHAEHARRNVSGCYGQPPD----NWRLVVSDLADSE 163 (264)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTSEEEEECSCHHHHHHHHHHHHHHHTSCCT----TEEEECSCGGGCC
T ss_pred CEEEecCcCCcHHHHHHHHhhC----------CCcEEEEecCCHHHHHHHHHhhhhhccCCCc----eEEEEeccccccc
Confidence 5799999999999999999986 5789999999999999999998764 2222 8999999999888
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
+++++||.|++ +++++..++.++.+.|||||++.+...
T Consensus 164 ~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred ccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEeC
Confidence 88899999976 578999999999999999999987543
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.77 E-value=1.4e-18 Score=110.40 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=87.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. ..+++++|+++++++.++++++..++.+ +++++.+|+.+....
T Consensus 35 ~~VLDiGcGsG~~s~~lA~~-------------~~~V~avD~~~~~l~~a~~n~~~~gl~~----~v~~~~gda~~~~~~ 97 (186)
T d1l3ia_ 35 DVAVDVGCGTGGVTLELAGR-------------VRRVYAIDRNPEAISTTEMNLQRHGLGD----NVTLMEGDAPEALCK 97 (186)
T ss_dssp CEEEEESCTTSHHHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTCCT----TEEEEESCHHHHHTT
T ss_pred CEEEEEECCeEccccccccc-------------ceEEEEecCCHHHHHHHHHHHHHcCCCc----ceEEEECchhhcccc
Confidence 36999999999999988764 5689999999999999999999988875 999999998877666
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
...||+|++....+ .....+..+.+.|||||++++....
T Consensus 98 ~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 98 IPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp SCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECB
T ss_pred cCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEeec
Confidence 68899999976544 4567899999999999999876543
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.77 E-value=3e-18 Score=110.22 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=89.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.|||||||+|..+..+++..+ ...++|+|+++.++..+.++....+.. |+.++.+|+..+. +
T Consensus 32 lvLeIGcG~G~~~~~lA~~~p-----------~~~~iGiD~~~~~i~~a~~~~~~~~l~-----Nv~~~~~Da~~l~~~~ 95 (204)
T d2fcaa1 32 IHIEVGTGKGQFISGMAKQNP-----------DINYIGIELFKSVIVTAVQKVKDSEAQ-----NVKLLNIDADTLTDVF 95 (204)
T ss_dssp EEEEECCTTSHHHHHHHHHCT-----------TSEEEEECSCHHHHHHHHHHHHHSCCS-----SEEEECCCGGGHHHHC
T ss_pred eEEEEEecCcHHHHHHHHhCC-----------CCcEEEeecchHHHHHHHHHHHHHhcc-----Cchhcccchhhhhccc
Confidence 479999999999999999865 789999999999999999999888765 8999999988764 7
Q ss_pred CCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~ 119 (131)
+.+++|.|++.+...|.... ..++..+.+.|||||.|++.
T Consensus 96 ~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~ 143 (204)
T d2fcaa1 96 EPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK 143 (204)
T ss_dssp CTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE
T ss_pred CchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 78899999998888776543 47999999999999999885
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=1.9e-18 Score=111.95 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=84.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++..+ +..+++++|+++++++.++++++..+.. ++.++..|..+....
T Consensus 77 ~~VLdiG~GtG~~s~~la~~~~----------~~g~V~~id~~~~~~~~a~~~~~~~~~~-----n~~~~~~d~~~~~~~ 141 (213)
T d1dl5a1 77 MRVLEIGGGTGYNAAVMSRVVG----------EKGLVVSVEYSRKICEIAKRNVERLGIE-----NVIFVCGDGYYGVPE 141 (213)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCGG
T ss_pred ceEEEecCccchhHHHHHHHhC----------CCCcEEEeecchhhHHHhhhhHhhhccc-----ccccccCchHHcccc
Confidence 4799999999999999998875 4678999999999999999999887765 788888998776666
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++||+|++..+++++++ .+.+.|||||++++.
T Consensus 142 ~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~p 174 (213)
T d1dl5a1 142 FSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVP 174 (213)
T ss_dssp GCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEE
T ss_pred ccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEE
Confidence 678999999999888763 467889999999874
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=8.2e-18 Score=112.97 Aligned_cols=101 Identities=12% Similarity=0.067 Sum_probs=87.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||+|..+..+++.. +.+|+++|+|+++++.++++.+..++.. ++.+...|..+.
T Consensus 54 ~~VLDiGCG~G~~a~~~a~~~------------g~~v~gi~ls~~q~~~a~~~~~~~~l~~----~~~~~~~d~~~~--- 114 (280)
T d2fk8a1 54 MTLLDIGCGWGTTMRRAVERF------------DVNVIGLTLSKNQHARCEQVLASIDTNR----SRQVLLQGWEDF--- 114 (280)
T ss_dssp CEEEEESCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTSCCSS----CEEEEESCGGGC---
T ss_pred CEEEEecCCchHHHHHHHHhC------------ceeEEEecchHHHHHHHHHHHHhhcccc----chhhhhhhhhhh---
Confidence 479999999999998888775 4689999999999999999998887764 777877776654
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.++||.|++..++.++. +...+++++.++|||||++++-.
T Consensus 115 ~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~ 156 (280)
T d2fk8a1 115 AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQS 156 (280)
T ss_dssp CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEE
Confidence 36799999999999985 56899999999999999998754
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.76 E-value=4.2e-18 Score=113.13 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=89.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|.++..+++..+ ..+++++|+ +++++.+++++...+..+ ++.+...|+.+ +.+
T Consensus 84 ~vlDvG~G~G~~~~~l~~~~P-----------~~~~~~~Dl-p~~~~~a~~~~~~~~~~~----ri~~~~~d~~~-~~p- 145 (256)
T d1qzza2 84 HVLDVGGGNGGMLAAIALRAP-----------HLRGTLVEL-AGPAERARRRFADAGLAD----RVTVAEGDFFK-PLP- 145 (256)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEEC-HHHHHHHHHHHHHTTCTT----TEEEEECCTTS-CCS-
T ss_pred EEEEECCCCCHHHHHHHHhhc-----------CcEEEEecC-hHHHHHHHHHHhhcCCcc----eeeeeeeeccc-ccc-
Confidence 589999999999999999875 789999997 778999999988877665 89999999765 333
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCCcEEEEEeccC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..||+|++.+++|++++. .++|+++++.|||||++++.|...
T Consensus 146 ~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~ 189 (256)
T d1qzza2 146 VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD 189 (256)
T ss_dssp CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH
T ss_pred ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEecc
Confidence 459999999999999754 577999999999999999998653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=5.4e-18 Score=110.80 Aligned_cols=111 Identities=9% Similarity=0.005 Sum_probs=89.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCC------------CCCCCcee
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV------------PVPNPRLR 68 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~------------~~~~~~~~ 68 (131)
.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.++++....... .....++.
T Consensus 47 ~rvLd~GCG~G~~a~~LA~~-------------G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 113 (229)
T d2bzga1 47 LRVFFPLCGKAVEMKWFADR-------------GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS 113 (229)
T ss_dssp CEEEETTCTTCTHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred CEEEEeCCCCcHHHHHHHhC-------------CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence 36999999999999999885 679999999999999998876532100 00012688
Q ss_pred EEecccccCC-CCCCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 69 FLEANAEELP-IESDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 69 ~~~~d~~~~~-~~~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
+++.|+..++ .....||+|+...++++++ +....+.++.++|||||++++..+...
T Consensus 114 ~~~~d~~~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~ 172 (229)
T d2bzga1 114 LYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYD 172 (229)
T ss_dssp EEESCGGGGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECC
T ss_pred EEEcchhhccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccC
Confidence 9999988764 5567899999999998884 678999999999999999888766543
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.75 E-value=4.7e-18 Score=112.22 Aligned_cols=100 Identities=16% Similarity=0.207 Sum_probs=86.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++.+. +..+++++|.++++++.|+++++...... ++++...|+.+. ++
T Consensus 87 ~rVLEiG~GsG~lt~~la~~v~----------~~g~V~~vD~~e~~~~~A~~n~~~~~~~~----nv~~~~~Di~~~-~~ 151 (250)
T d1yb2a1 87 MDILEVGVGSGNMSSYILYALN----------GKGTLTVVERDEDNLKKAMDNLSEFYDIG----NVRTSRSDIADF-IS 151 (250)
T ss_dssp CEEEEECCTTSHHHHHHHHHHT----------TSSEEEEECSCHHHHHHHHHHHHTTSCCT----TEEEECSCTTTC-CC
T ss_pred CEEEEeeeeCcHHHHHHHHHhC----------CCcEEEEEECCHHHHHHHHHHHHHhcCCC----ceEEEEeeeecc-cc
Confidence 5799999999999999999875 46799999999999999999998765443 899999998775 45
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++.||.|++ +++++..++.++.+.|||||++++..
T Consensus 152 ~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~ 186 (250)
T d1yb2a1 152 DQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYL 186 (250)
T ss_dssp SCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred cceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEe
Confidence 678999986 46788889999999999999998753
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.75 E-value=1.5e-17 Score=112.14 Aligned_cols=104 Identities=11% Similarity=-0.021 Sum_probs=89.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||.|..+..+++.. +.+++|+++|++++..++++....++.. ++.+...|.. ..
T Consensus 63 ~~VLDiGCG~G~~~~~~a~~~------------g~~v~git~s~~q~~~a~~~~~~~~l~~----~v~~~~~d~~---~~ 123 (291)
T d1kpia_ 63 MTLLDIGCGWGSTMRHAVAEY------------DVNVIGLTLSENQYAHDKAMFDEVDSPR----RKEVRIQGWE---EF 123 (291)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHHSCCSS----CEEEEECCGG---GC
T ss_pred CEEEEecCcchHHHHHHHHhc------------CcceeeccchHHHHHHHHHHHHhhccch----hhhhhhhccc---cc
Confidence 479999999999999888875 4689999999999999999999887765 7888877764 34
Q ss_pred CCCeeEEEEccccccccC---------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNVTR---------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~---------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+++||.|++..++.++.+ ...+++++.++|||||++++-.+..
T Consensus 124 ~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~ 175 (291)
T d1kpia_ 124 DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITI 175 (291)
T ss_dssp CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEEC
T ss_pred ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEec
Confidence 578999999999988864 5899999999999999999866553
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=7.2e-18 Score=110.29 Aligned_cols=106 Identities=11% Similarity=0.015 Sum_probs=87.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
++|||+|||+|..+..+++..+ ..+|+++|+|+.|++.++++..... ++..+..|..... .
T Consensus 76 ~~VLDlGcGsG~~~~~la~~~~-----------~g~V~aVDiS~~~i~~a~~~a~~~~-------ni~~i~~d~~~~~~~ 137 (230)
T d1g8sa_ 76 SKILYLGASAGTTPSHVADIAD-----------KGIVYAIEYAPRIMRELLDACAERE-------NIIPILGDANKPQEY 137 (230)
T ss_dssp CEEEEESCCSSHHHHHHHHHTT-----------TSEEEEEESCHHHHHHHHHHTTTCT-------TEEEEECCTTCGGGG
T ss_pred CEEEEeCEEcCHHHHHHHHhCC-----------CCEEEEEeCcHHHHHHHHHHHhhhc-------ccceEEEeeccCccc
Confidence 5799999999999999999754 5799999999999999998876654 7777777766543 4
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
....+|++++...+++..+...++.++++.|||||++++......
T Consensus 138 ~~~~~~v~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~ 182 (230)
T d1g8sa_ 138 ANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARS 182 (230)
T ss_dssp TTTCCCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGG
T ss_pred ccccceeEEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccc
Confidence 445677777777788888899999999999999999988765543
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.74 E-value=2.1e-17 Score=111.10 Aligned_cols=103 Identities=17% Similarity=0.093 Sum_probs=90.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||||||.|..+..+++.. +.+++|+++|+++++.++++....+..+ ++++...|...++
T Consensus 64 ~~VLDiGCG~G~~a~~~a~~~------------g~~v~git~s~~Q~~~a~~~~~~~g~~~----~v~~~~~d~~~~~-- 125 (285)
T d1kpga_ 64 MTLLDVGCGWGATMMRAVEKY------------DVNVVGLTLSKNQANHVQQLVANSENLR----SKRVLLAGWEQFD-- 125 (285)
T ss_dssp CEEEEETCTTSHHHHHHHHHH------------CCEEEEEESCHHHHHHHHHHHHTCCCCS----CEEEEESCGGGCC--
T ss_pred CEEEEecCcchHHHHHHHhcC------------CcceEEEeccHHHHHHHHHHHHhhhhhh----hhHHHHhhhhccc--
Confidence 479999999999999988885 5799999999999999999988887775 8999999987764
Q ss_pred CCCeeEEEEcccccccc--CHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVT--RIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~--~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
++||.|++..++.++. +...+++++.++|+|||++++..++
T Consensus 126 -~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 126 -EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp -CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred -ccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 6799999999998884 6689999999999999999886654
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.74 E-value=5.9e-18 Score=109.31 Aligned_cols=102 Identities=14% Similarity=0.046 Sum_probs=82.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|..+..+++..+ ..+|+++|+|+.+++.++++.+... ++.++..|.......
T Consensus 58 ~~VLDlGcG~G~~~~~la~~v~-----------~g~V~gvDis~~~i~~a~~~a~~~~-------ni~~i~~d~~~~~~~ 119 (209)
T d1nt2a_ 58 ERVLYLGAASGTTVSHLADIVD-----------EGIIYAVEYSAKPFEKLLELVRERN-------NIIPLLFDASKPWKY 119 (209)
T ss_dssp CEEEEETCTTSHHHHHHHHHTT-----------TSEEEEECCCHHHHHHHHHHHHHCS-------SEEEECSCTTCGGGT
T ss_pred CEEEEeCCcCCHHHHHHHHhcc-----------CCeEEEEeCCHHHHHHHHHHhhccC-------CceEEEeeccCcccc
Confidence 4799999999999999998875 4689999999999999999987765 899999998775433
Q ss_pred CC---CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SD---SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~---~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.. .+|+|+. .+.+..+...++.++.+.|||||++++....
T Consensus 120 ~~~~~~vd~v~~--~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 162 (209)
T d1nt2a_ 120 SGIVEKVDLIYQ--DIAQKNQIEILKANAEFFLKEKGEVVIMVKA 162 (209)
T ss_dssp TTTCCCEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEEH
T ss_pred ccccceEEEEEe--cccChhhHHHHHHHHHHHhccCCeEEEEEEc
Confidence 33 3454433 3555667888999999999999999887643
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.73 E-value=4.3e-17 Score=104.80 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=88.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--I 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~ 79 (131)
.|||||||+|..+..+++..+ ...++|+|+++.++..+.++....+.+ ++.+..+|+..+. +
T Consensus 34 lvLdIGcG~G~~~~~lA~~~p-----------~~~~iGid~~~~~v~~a~~~~~~~~l~-----Ni~~~~~da~~l~~~~ 97 (204)
T d1yzha1 34 IHVEVGSGKGAFVSGMAKQNP-----------DINYIGIDIQKSVLSYALDKVLEVGVP-----NIKLLWVDGSDLTDYF 97 (204)
T ss_dssp EEEEESCTTSHHHHHHHHHCT-----------TSEEEEEESCHHHHHHHHHHHHHHCCS-----SEEEEECCSSCGGGTS
T ss_pred eEEEEeccCCHHHHHHHHHCC-----------CCceEEEeccHHHHHHHHHhhhhhccc-----cceeeecCHHHHhhhc
Confidence 389999999999999999865 789999999999999999998887765 8999999987764 6
Q ss_pred CCCCeeEEEEccccccccCH--------HHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRI--------DKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~--------~~~l~~~~~~L~p~G~l~~~ 119 (131)
+..++|.|++.+.-.|.... ..++..+.+.|||||.+++.
T Consensus 98 ~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~ 145 (204)
T d1yzha1 98 EDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK 145 (204)
T ss_dssp CTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred cCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence 77899999988876665532 67899999999999999875
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=5.3e-18 Score=110.91 Aligned_cols=101 Identities=13% Similarity=0.080 Sum_probs=81.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~ 79 (131)
+|||||||+|..+..+++.. ..+++++|+|+.+++.++++.+... .++..+..+.... ++
T Consensus 56 ~VLdIGcG~G~~a~~~a~~~------------~~~v~~id~s~~~~~~a~~~~~~~~------~~~~~~~~~~~~~~~~~ 117 (229)
T d1zx0a1 56 RVLEVGFGMAIAASKVQEAP------------IDEHWIIECNDGVFQRLRDWAPRQT------HKVIPLKGLWEDVAPTL 117 (229)
T ss_dssp EEEEECCTTSHHHHHHHTSC------------EEEEEEEECCHHHHHHHHHHGGGCS------SEEEEEESCHHHHGGGS
T ss_pred eEEEeeccchHHHHHHHHcC------------CCeEEEeCCCHHHHHHHHHHhhhcc------ccccccccccccccccc
Confidence 69999999999999887752 3589999999999999999987654 2577777765543 46
Q ss_pred CCCCeeEEEE-----ccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTI-----AFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~-----~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+..+||.|+. ...+++..+...++.+++++|||||++++.+
T Consensus 118 ~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 118 PDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 6788999874 5556677788999999999999999998743
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=1e-17 Score=111.00 Aligned_cols=99 Identities=20% Similarity=0.137 Sum_probs=79.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.+++.+++. +.+++++|+|+.+++.++++.+.+++ +.++...|.... .+
T Consensus 122 ~~VLDiGcGsG~l~i~aa~~-------------g~~V~gvDis~~av~~A~~na~~n~~------~~~~~~~d~~~~-~~ 181 (254)
T d2nxca1 122 DKVLDLGTGSGVLAIAAEKL-------------GGKALGVDIDPMVLPQAEANAKRNGV------RPRFLEGSLEAA-LP 181 (254)
T ss_dssp CEEEEETCTTSHHHHHHHHT-------------TCEEEEEESCGGGHHHHHHHHHHTTC------CCEEEESCHHHH-GG
T ss_pred CEEEEcccchhHHHHHHHhc-------------CCEEEEEECChHHHHHHHHHHHHcCC------ceeEEecccccc-cc
Confidence 36999999999998877653 56899999999999999999988764 456778886552 45
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
.++||+|+++...+ .+...+.++.+.|||||++++..+.
T Consensus 182 ~~~fD~V~ani~~~---~l~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 182 FGPFDLLVANLYAE---LHAALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp GCCEEEEEEECCHH---HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccchhhhccccc---cHHHHHHHHHHhcCCCcEEEEEecc
Confidence 57899999875433 3566788999999999999986543
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=3e-17 Score=106.97 Aligned_cols=104 Identities=19% Similarity=0.185 Sum_probs=83.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|+.+..+++... +..+|+++|.++++++.+++++...........++.+..+|.......
T Consensus 78 ~~VLdiG~GsGy~ta~la~l~~----------~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~ 147 (224)
T d1i1na_ 78 AKALDVGSGSGILTACFARMVG----------CTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAE 147 (224)
T ss_dssp CEEEEETCTTSHHHHHHHHHHC----------TTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGG
T ss_pred CeEEEecCCCCHHHHHHHHHhC----------CCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccch
Confidence 4799999999999999988875 467999999999999999998875432100012688899998776666
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+||+|++...+++.++ .+.+.|||||++++.-
T Consensus 148 ~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 148 EAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp GCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence 788999999998887763 4678899999998743
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=2.7e-17 Score=110.93 Aligned_cols=104 Identities=19% Similarity=0.137 Sum_probs=75.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++......... .....+...++....
T Consensus 59 ~vLD~GcG~G~~~~~la~~-------------g~~v~gvD~S~~ml~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 124 (292)
T d1xvaa_ 59 RVLDVACGTGVDSIMLVEE-------------GFSVTSVDASDKMLKYALKERWNRRKEPA-FDKWVIEEANWLTLDKDV 124 (292)
T ss_dssp EEEESSCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHHHHHTTTSHH-HHTCEEEECCGGGHHHHS
T ss_pred EEEEecCCCcHHHHHHHHc-------------CCeeeeccCchHHHHHHHHHHHhcccccc-cceeeeeecccccccccc
Confidence 6999999999999999875 56899999999999999988765442210 001233344433221
Q ss_pred CCCCCeeEEEEcc-cccccc-------CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAF-GIRNVT-------RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~-~l~~~~-------~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++.+ ++++++ +...+|.++.++|||||++++.
T Consensus 125 ~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~ 173 (292)
T d1xvaa_ 125 PAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID 173 (292)
T ss_dssp CCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred CCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence 2346799999864 566664 3568999999999999998874
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1.1e-16 Score=106.60 Aligned_cols=100 Identities=16% Similarity=0.155 Sum_probs=85.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|.++..+++.+. +..+++++|.++++++.|+++++..++.+ ++.+...|+.. .+.
T Consensus 105 ~~VLDiG~GsG~lt~~lA~~~~----------~~G~V~~vD~~~~~~~~A~~~~~~~g~~~----~v~~~~~d~~~-~~~ 169 (266)
T d1o54a_ 105 DRIIDTGVGSGAMCAVLARAVG----------SSGKVFAYEKREEFAKLAESNLTKWGLIE----RVTIKVRDISE-GFD 169 (266)
T ss_dssp CEEEEECCTTSHHHHHHHHHTT----------TTCEEEEECCCHHHHHHHHHHHHHTTCGG----GEEEECCCGGG-CCS
T ss_pred CEEEECCCCCCHHHHHHHHHhC----------CCcEEEEEeCCHHHHHHHHHHHHHhcccc----CcEEEeccccc-ccc
Confidence 5799999999999999999875 47899999999999999999999887654 78888888654 345
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+|.|+. +++++..++.++.++|||||++++..
T Consensus 170 ~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~ 204 (266)
T d1o54a_ 170 EKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVC 204 (266)
T ss_dssp CCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred ccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence 577998864 67889999999999999999998754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=3.9e-17 Score=107.87 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=79.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCC----------------
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNP---------------- 65 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~---------------- 65 (131)
+|||+|||+|..+..++.. ...+++++|+|+.+++.++++++..........
T Consensus 54 ~vLDlGcG~G~~~~~~~~~------------~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (257)
T d2a14a1 54 TLIDIGSGPTIYQVLAACD------------SFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWE 121 (257)
T ss_dssp EEEESSCTTCCGGGTTGGG------------TEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHH
T ss_pred EEEEECCCCCHhHHHHhcc------------ccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHH
Confidence 6999999999988766554 245799999999999999998765432110000
Q ss_pred --------ce-eEEecc----cccCCCCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 66 --------RL-RFLEAN----AEELPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 66 --------~~-~~~~~d----~~~~~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.+ .....+ ....++..++||+|++.++++++. +...++.++.+.|||||++++.++...
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~ 197 (257)
T d2a14a1 122 EKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRL 197 (257)
T ss_dssp HHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSC
T ss_pred HHHHHHhhhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccc
Confidence 00 011111 111235567899999999999885 567889999999999999999876543
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.67 E-value=5.3e-16 Score=101.08 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=84.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|||+|||+|..+..+++.++ +..+|+++|+++.++..++++.+... ++..+..|....
T Consensus 75 ~~VLDlGaGsG~~t~~la~~VG----------~~G~V~aVD~s~~~l~~a~~~a~~~~-------~~~~i~~d~~~~~~~ 137 (227)
T d1g8aa_ 75 KSVLYLGIASGTTASHVSDIVG----------WEGKIFGIEFSPRVLRELVPIVEERR-------NIVPILGDATKPEEY 137 (227)
T ss_dssp CEEEEETTTSTTHHHHHHHHHC----------TTSEEEEEESCHHHHHHHHHHHSSCT-------TEEEEECCTTCGGGG
T ss_pred CEEEEeccCCCHHHHHHHHHhC----------CCCEEEEEeCcHHHHHHHHHHHHhcC-------CceEEEEECCCcccc
Confidence 5799999999999999999986 47899999999999999999887655 677777776543
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
+.....+|+|++. +.+..+...++.++.+.|||||+++++....
T Consensus 138 ~~~~~~vD~i~~d--~~~~~~~~~~l~~~~~~LkpgG~lvi~~ka~ 181 (227)
T d1g8aa_ 138 RALVPKVDVIFED--VAQPTQAKILIDNAEVYLKRGGYGMIAVKSR 181 (227)
T ss_dssp TTTCCCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred cccccceEEEEEE--ccccchHHHHHHHHHHhcccCCeEEEEEECC
Confidence 2334678888763 4555677889999999999999998875443
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.66 E-value=3.8e-16 Score=101.54 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=77.0
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
++|||+|||+|+.+..+++. ..+|+++|.++++.+.++++..... ++.++..|.......
T Consensus 72 ~~VLdIG~GsGy~ta~La~l-------------~~~V~aiE~~~~~~~~A~~~~~~~~-------nv~~~~~d~~~g~~~ 131 (224)
T d1vbfa_ 72 QKVLEIGTGIGYYTALIAEI-------------VDKVVSVEINEKMYNYASKLLSYYN-------NIKLILGDGTLGYEE 131 (224)
T ss_dssp CEEEEECCTTSHHHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTCS-------SEEEEESCGGGCCGG
T ss_pred ceEEEecCCCCHHHHHHHHH-------------hcccccccccHHHHHHHHHHHhccc-------ccccccCchhhcchh
Confidence 47999999999999888775 4689999999999999999877543 899999997664444
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||.|++..++.+++ ..+.+.|+|||++++.
T Consensus 132 ~~pfD~Iiv~~a~~~ip------~~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 132 EKPYDRVVVWATAPTLL------CKPYEQLKEGGIMILP 164 (224)
T ss_dssp GCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEE
T ss_pred hhhHHHHHhhcchhhhh------HHHHHhcCCCCEEEEE
Confidence 57899999988877665 3466889999999874
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.5e-16 Score=106.65 Aligned_cols=105 Identities=14% Similarity=0.138 Sum_probs=81.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCC------CCCCCceeEEeccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKV------PVPNPRLRFLEANA 74 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~d~ 74 (131)
++|||+|||+|.++..+++.+. +..+|+++|+++++++.|+++++..... .....++.+...|+
T Consensus 100 ~rVLE~GtGsG~lt~~LAr~vg----------~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di 169 (324)
T d2b25a1 100 DTVLEAGSGSGGMSLFLSKAVG----------SQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDI 169 (324)
T ss_dssp CEEEEECCTTSHHHHHHHHHHC----------TTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCT
T ss_pred CEEEEecccccHHHHHHHHHhC----------CCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecch
Confidence 4799999999999999999986 4789999999999999999998753110 00013789999998
Q ss_pred ccCC--CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 75 EELP--IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.... ++...||.|++ .++++..++.++.++|||||++++..
T Consensus 170 ~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 170 SGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp TCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred hhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 7754 45568999976 56777889999999999999988743
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.65 E-value=7.6e-16 Score=105.35 Aligned_cols=100 Identities=13% Similarity=0.084 Sum_probs=83.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+|||+|.++..+++. +..+|+++|.|+ ++..+++.....+..+ +++++..++.+++++
T Consensus 40 ~~VLDlGcGtG~ls~~aa~~------------Ga~~V~avd~s~-~~~~a~~~~~~~~~~~----~i~~i~~~~~~l~~~ 102 (328)
T d1g6q1_ 40 KIVLDVGCGTGILSMFAAKH------------GAKHVIGVDMSS-IIEMAKELVELNGFSD----KITLLRGKLEDVHLP 102 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHT------------CCSEEEEEESST-HHHHHHHHHHHTTCTT----TEEEEESCTTTSCCS
T ss_pred CEEEEeCCCCCHHHHHHHHh------------CCCEEEEEeCCH-HHHHHHHHHHHhCccc----cceEEEeehhhccCc
Confidence 36999999999999877775 246899999886 7788888888777665 899999999999888
Q ss_pred CCCeeEEEEccccccc---cCHHHHHHHHHHhccCCcEEE
Q psy890 81 SDSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~p~G~l~ 117 (131)
.++||+|++....+.. ......+....++|||||+++
T Consensus 103 ~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 103 FPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp SSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 8999999997665544 467888999999999999985
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.1e-15 Score=101.71 Aligned_cols=111 Identities=14% Similarity=0.049 Sum_probs=77.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC-----------------
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----------------- 63 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----------------- 63 (131)
.++||+|||+|..+...+... ..+++++|+|+.|++.+++.+......-..
T Consensus 56 ~~vLDiGcG~g~~~~~~~~~~------------~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 123 (263)
T d2g72a1 56 RTLIDIGSGPTVYQLLSACSH------------FEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECW 123 (263)
T ss_dssp SEEEEETCTTCCGGGTTGGGG------------CSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCH
T ss_pred cEEEEeccCCCHHHHHHhccc------------CCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchh
Confidence 368999999998765544432 458999999999999998876543211000
Q ss_pred --------CCceeEEecccccC------CCCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 64 --------NPRLRFLEANAEEL------PIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 64 --------~~~~~~~~~d~~~~------~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
.........|+... +...++||+|++.++++++. +...++.++.++|||||++++.....
T Consensus 124 ~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~ 201 (263)
T d2g72a1 124 QDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALE 201 (263)
T ss_dssp HHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEES
T ss_pred hhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccC
Confidence 00012334454332 13346799999999998885 56788999999999999999876543
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.7e-16 Score=108.68 Aligned_cols=105 Identities=12% Similarity=0.084 Sum_probs=82.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-------cCCCCCCCceeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-------FKVPVPNPRLRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~d 73 (131)
.+|||+|||+|..+..+++..+ ..+++|+|+++.+++.|++..+.. +... .+++++.+|
T Consensus 153 ~~vlD~GcG~G~~~~~~a~~~~-----------~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~---~~i~~~~gd 218 (328)
T d1nw3a_ 153 DLFVDLGSGVGQVVLQVAAATN-----------CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKH---AEYTLERGD 218 (328)
T ss_dssp CEEEEETCTTSHHHHHHHHHCC-----------CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCC---CCEEEEECC
T ss_pred CEEEEcCCCCCHHHHHHHHHhC-----------CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccC---CceEEEECc
Confidence 4699999999999999988754 668999999999999988765432 2221 279999999
Q ss_pred cccCCCCCCC--eeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 74 AEELPIESDS--YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 74 ~~~~~~~~~~--~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+.+.++.+.. +|+|+++ .+.+.+++...|.++.+.|||||+++..+
T Consensus 219 ~~~~~~~~~~~~advi~~~-~~~f~~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVN-NFAFGPEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp TTSHHHHHHHHHCSEEEEC-CTTTCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccccccccccCcceEEEEc-ceecchHHHHHHHHHHHhCCCCcEEEEec
Confidence 9887654433 4777765 45567888999999999999999998754
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.63 E-value=1.5e-15 Score=103.41 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=82.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +..+|+++|.|+. ...+++.....++.+ ++.++..+..+++.+.
T Consensus 36 ~VLDiGcG~G~ls~~aa~~------------Ga~~V~avd~s~~-~~~a~~~~~~n~~~~----~v~~~~~~~~~~~~~~ 98 (316)
T d1oria_ 36 VVLDVGSGTGILCMFAAKA------------GARKVIGIECSSI-SDYAVKIVKANKLDH----VVTIIKGKVEEVELPV 98 (316)
T ss_dssp EEEEETCTTSHHHHHHHHT------------TCSEEEEEECSTT-HHHHHHHHHHTTCTT----TEEEEESCTTTCCCSS
T ss_pred EEEEEecCCcHHHHHHHHh------------CCCEEEEEcCcHH-HhhhhhHHHHhCCcc----ccceEeccHHHccccc
Confidence 6899999999999888775 2468999999875 566677777766664 8999999999998888
Q ss_pred CCeeEEEEccccccc---cCHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNV---TRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~---~~~~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++....+.+ ..+..++..+.++|+|||+++
T Consensus 99 ~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 99 EKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp SCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred ceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 899999987665544 367889999999999999986
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=4.7e-15 Score=100.66 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=79.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. +..+|+++|.|+.+.. +++.....+..+ ++.++..++.+++.+.
T Consensus 38 ~VLDiGcG~G~lsl~aa~~------------Ga~~V~aid~s~~~~~-a~~~~~~~~~~~----~i~~~~~~~~~l~~~~ 100 (311)
T d2fyta1 38 VVLDVGCGTGILSMFAAKA------------GAKKVLGVDQSEILYQ-AMDIIRLNKLED----TITLIKGKIEEVHLPV 100 (311)
T ss_dssp EEEEETCTTSHHHHHHHHT------------TCSEEEEEESSTHHHH-HHHHHHHTTCTT----TEEEEESCTTTSCCSC
T ss_pred EEEEECCCCCHHHHHHHHc------------CCCEEEEEeCHHHHHH-HHHHHHHhCCCc----cceEEEeeHHHhcCcc
Confidence 6899999999999988875 2468999999998754 555555555554 8999999999998888
Q ss_pred CCeeEEEEcccccccc---CHHHHHHHHHHhccCCcEEE
Q psy890 82 DSYSAYTIAFGIRNVT---RIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~---~~~~~l~~~~~~L~p~G~l~ 117 (131)
++||+|++....+... .+...+....+.|+|||+++
T Consensus 101 ~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 101 EKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp SCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred ccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 8999999976655543 35677777889999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.59 E-value=6.8e-15 Score=98.09 Aligned_cols=105 Identities=14% Similarity=0.115 Sum_probs=84.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+.|||+|||+|..+..++...+ ..+++++|+|+.+++.|+++....+.. ++.++..|..+ +++
T Consensus 110 ~~vlDlGtGSG~I~i~la~~~p-----------~~~v~avDis~~Al~~A~~Na~~~~~~-----~v~~~~~d~~~-~~~ 172 (274)
T d2b3ta1 110 CRILDLGTGTGAIALALASERP-----------DCEIIAVDRMPDAVSLAQRNAQHLAIK-----NIHILQSDWFS-ALA 172 (274)
T ss_dssp CEEEEETCTTSHHHHHHHHHCT-----------TSEEEEECSSHHHHHHHHHHHHHHTCC-----SEEEECCSTTG-GGT
T ss_pred cceeeeehhhhHHHHHHHhhCC-----------cceeeeccchhHHHhHHHHHHHHhCcc-----cceeeeccccc-ccC
Confidence 3689999999999999988865 789999999999999999999988764 79999999766 345
Q ss_pred CCCeeEEEEccccc-------------ccc------------CHHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIR-------------NVT------------RIDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~-------------~~~------------~~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
..+||+|+++-..- +-+ ...+++.++.++|+|||.+++ |++.
T Consensus 173 ~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Eig~ 239 (274)
T d2b3ta1 173 GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EHGW 239 (274)
T ss_dssp TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-ECCS
T ss_pred CCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EECc
Confidence 67899999963321 111 135688899999999999976 6554
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.59 E-value=1.1e-14 Score=94.07 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=81.2
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||||||+|+.+..++... +.+++++|.++++++.+++++...+.. ++.++.+|.......
T Consensus 80 ~~VLeIGsGsGY~taila~l~------------g~~V~~ie~~~~l~~~a~~~l~~~g~~-----nv~~~~gd~~~g~~~ 142 (215)
T d1jg1a_ 80 MNILEVGTGSGWNAALISEIV------------KTDVYTIERIPELVEFAKRNLERAGVK-----NVHVILGDGSKGFPP 142 (215)
T ss_dssp CCEEEECCTTSHHHHHHHHHH------------CSCEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEESCGGGCCGG
T ss_pred ceEEEecCCCChhHHHHHHhh------------CceeEEEeccHHHHHHHHHHHHHcCCc-----eeEEEECccccCCcc
Confidence 479999999999999888764 357999999999999999999987765 899999998775555
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+||.|++..++...++. +...|+|||++++.
T Consensus 143 ~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~p 175 (215)
T d1jg1a_ 143 KAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIP 175 (215)
T ss_dssp GCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEE
T ss_pred cCcceeEEeecccccCCHH------HHHhcCCCCEEEEE
Confidence 6889999999888776632 56779999999874
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.53 E-value=2e-14 Score=93.30 Aligned_cols=103 Identities=14% Similarity=0.130 Sum_probs=79.7
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc-----cCCCCCCCceeEEecccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL-----FKVPVPNPRLRFLEANAE 75 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~ 75 (131)
.+|||+|||+|+.+..+++.++.... ....+|+++|.++++++.+++++... +.. ++.+...|..
T Consensus 82 ~~VLeIGtGsGY~ta~la~l~g~~g~-----~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~-----nv~~~~~d~~ 151 (223)
T d1r18a_ 82 ARILDVGSGSGYLTACFYRYIKAKGV-----DADTRIVGIEHQAELVRRSKANLNTDDRSMLDSG-----QLLIVEGDGR 151 (223)
T ss_dssp CEEEEESCTTSHHHHHHHHHHHHSCC-----CTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHT-----SEEEEESCGG
T ss_pred CeEEEecCCCCHHHHHHHHHhhhccC-----CcccEEEEEecCHHHHHHHHHhhhhcchhhcCcc-----EEEEEecccc
Confidence 37999999999999999887641100 02358999999999999998876532 222 7899999987
Q ss_pred cCCCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 76 ELPIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 76 ~~~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....+..+||+|++..++...++ .+.+.|+|||++++.
T Consensus 152 ~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~p 189 (223)
T d1r18a_ 152 KGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVP 189 (223)
T ss_dssp GCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEE
T ss_pred cccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEE
Confidence 76556678999999988876663 467899999999774
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=2.8e-14 Score=90.60 Aligned_cols=108 Identities=18% Similarity=0.357 Sum_probs=90.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
.+||++||+|..+..+++..+ ..+++++|.++++++.+++++.... .++.++..++.++.
T Consensus 26 ~~lD~t~G~Gghs~~il~~~~-----------~~~vi~~D~d~~~l~~a~~~l~~~~------~r~~~~~~~f~~~~~~~ 88 (192)
T d1m6ya2 26 IILDCTVGEGGHSRAILEHCP-----------GCRIIGIDVDSEVLRIAEEKLKEFS------DRVSLFKVSYREADFLL 88 (192)
T ss_dssp EEEETTCTTSHHHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHTGGGT------TTEEEEECCGGGHHHHH
T ss_pred EEEEecCCCcHHHHHHHhcCC-----------CCeEEEeechHHHHHHHHHhhcccc------ccccchhHHHhhHHHHH
Confidence 689999999999999999875 6789999999999999999987754 28999999887653
Q ss_pred --CCCCCeeEEEEcccccc---------ccCHHHHHHHHHHhccCCcEEEEEeccCCCc
Q psy890 79 --IESDSYSAYTIAFGIRN---------VTRIDKALSEAYRVLKPGGRFLCLEFSHVNN 126 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~---------~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~~ 126 (131)
+..+++|.|+...++.. +......|..+.++|+|||++.++.++..+.
T Consensus 89 ~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed 147 (192)
T d1m6ya2 89 KTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED 147 (192)
T ss_dssp HHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred HHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence 44578999998877633 3356788999999999999999988775543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.48 E-value=1.1e-13 Score=96.60 Aligned_cols=105 Identities=10% Similarity=-0.015 Sum_probs=76.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc-------CCCCCCCceeE-Eec
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF-------KVPVPNPRLRF-LEA 72 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~~ 72 (131)
+++||+|||+|..+..++...+ ..+++|+|+++.+++.|+++.+... ... ..+.+ ...
T Consensus 218 d~fLDLGCG~G~~vl~aA~~~g-----------~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~---~~~~~~~~~ 283 (406)
T d1u2za_ 218 DTFMDLGSGVGNCVVQAALECG-----------CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRL---NNVEFSLKK 283 (406)
T ss_dssp CEEEEESCTTSHHHHHHHHHHC-----------CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCC---CCEEEEESS
T ss_pred CEEEeCCCCCcHHHHHHHHHcC-----------CCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccc---ccceeeeee
Confidence 4799999999999999998875 6789999999999999998776421 110 02222 233
Q ss_pred ccccCC---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 73 NAEELP---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 73 d~~~~~---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++...+ ..-..+|+|+++. .++.+++...|.++.+.|||||+++..+
T Consensus 284 ~f~~~~~~d~~~~~adVV~inn-~~f~~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 284 SFVDNNRVAELIPQCDVILVNN-FLFDEDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp CSTTCHHHHHHGGGCSEEEECC-TTCCHHHHHHHHHHHTTCCTTCEEEESS
T ss_pred chhhccccccccccceEEEEec-ccCchHHHHHHHHHHHhcCCCcEEEEec
Confidence 333221 1123578888764 5567889999999999999999998765
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.48 E-value=1.8e-13 Score=90.61 Aligned_cols=99 Identities=9% Similarity=0.113 Sum_probs=81.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..+++. ...+++++|+|+.+++.++++++.+++.+ +++++.+|..++. ..
T Consensus 110 ~VlD~~aG~G~~~l~~a~~------------~~~~V~avd~n~~a~~~~~~N~~~n~l~~----~v~~~~~D~~~~~-~~ 172 (260)
T d2frna1 110 LVVDMFAGIGHLSLPIAVY------------GKAKVIAIEKDPYTFKFLVENIHLNKVED----RMSAYNMDNRDFP-GE 172 (260)
T ss_dssp EEEETTCTTTTTHHHHHHH------------TCCEEEEECCCHHHHHHHHHHHHHTTCTT----TEEEECSCTTTCC-CC
T ss_pred EEEECcceEcHHHHHHHHh------------CCcEEEEecCCHHHHHHHHHHHHHhCCCc----eEEEEEcchHHhc-cC
Confidence 6999999999999988876 24689999999999999999999988875 8999999988764 34
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..||.|++.... ....++..+.+.|++||.+.+.++
T Consensus 173 ~~~D~Ii~~~p~----~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 173 NIADRILMGYVV----RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp SCEEEEEECCCS----SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEECCCC----chHHHHHHHHhhcCCCCEEEEEec
Confidence 679999875432 234567778899999999876544
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.48 E-value=9.7e-14 Score=94.40 Aligned_cols=105 Identities=23% Similarity=0.186 Sum_probs=83.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||++||+|.++..++.. ..+|+++|.|+.+++.++++++.+++. +++++..|..+.
T Consensus 148 rVLDl~~gtG~~s~~~a~g-------------~~~V~~vD~s~~al~~a~~n~~~ngl~-----~~~~i~~d~~~~~~~~ 209 (318)
T d1wxxa2 148 RALDVFSYAGGFALHLALG-------------FREVVAVDSSAEALRRAEENARLNGLG-----NVRVLEANAFDLLRRL 209 (318)
T ss_dssp EEEEETCTTTHHHHHHHHH-------------EEEEEEEESCHHHHHHHHHHHHHTTCT-----TEEEEESCHHHHHHHH
T ss_pred eeeccCCCCcHHHHHHHhc-------------CCcEEeecchHHHHHHHHHHHHHcCCC-----CcceeeccHHHHhhhh
Confidence 6899999999999887653 568999999999999999999988875 789999997653
Q ss_pred CCCCCCeeEEEEcccccc---------ccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 78 PIESDSYSAYTIAFGIRN---------VTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~---------~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
....++||+|++...... ..+...++..+.++|+|||.+++..++..
T Consensus 210 ~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 210 EKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp HHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 234578999998543211 11345678888999999999998776643
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=1.4e-13 Score=93.85 Aligned_cols=108 Identities=14% Similarity=0.090 Sum_probs=84.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
.+|||++||+|.++..++.. ...+|+++|+|+.+++.+++++..+++.+ +++++..|+.+.
T Consensus 147 ~~VLDl~~g~G~~si~~a~~------------ga~~V~~vD~s~~al~~a~~N~~~ngl~~----~~~~~~~d~~~~~~~ 210 (324)
T d2as0a2 147 DRVLDVFTYTGGFAIHAAIA------------GADEVIGIDKSPRAIETAKENAKLNGVED----RMKFIVGSAFEEMEK 210 (324)
T ss_dssp CEEEETTCTTTHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHTTCGG----GEEEEESCHHHHHHH
T ss_pred CeeecccCcccchhhhhhhc------------CCcEEEeecCCHHHHHHHHHHHHHcCCCc----cceeeechhhhhhHH
Confidence 36999999999999988765 24589999999999999999999988764 889999997653
Q ss_pred -CCCCCCeeEEEEccccccc---------cCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 78 -PIESDSYSAYTIAFGIRNV---------TRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l~~~---------~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.....+||+|++....... .+....+..+.++|+|||+++++..+..
T Consensus 211 ~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 211 LQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp HHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred HHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 2345789999984332111 1345678888899999999998876654
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.44 E-value=1.9e-13 Score=88.21 Aligned_cols=102 Identities=16% Similarity=0.165 Sum_probs=80.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+|||+|||+|..+..+++.++ .+.+++++|.++.+.+.+++++...++.+ +++++.+|..+. +
T Consensus 59 ~ILEiGt~~G~Sti~la~al~----------~~g~v~sid~~~~~~~~a~~~~~~~gl~~----~i~l~~Gd~~e~l~~l 124 (214)
T d2cl5a1 59 LVLELGAYCGYSAVRMARLLQ----------PGARLLTMEMNPDYAAITQQMLNFAGLQD----KVTILNGASQDLIPQL 124 (214)
T ss_dssp EEEEECCTTSHHHHHHHTTCC----------TTCEEEEEESCHHHHHHHHHHHHHHTCGG----GEEEEESCHHHHGGGH
T ss_pred EEEEEccCchhHHHHHHHhCC----------CccEEEEEeccHHHHHHHHHHHHHcCCCc----cceeeeccccccccch
Confidence 599999999999999998775 46899999999999999999999888775 899999997653 2
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
....+||+|+....-. .......+.+..++|+|||++++
T Consensus 125 ~~~~~~~~~D~ifiD~~~~-~~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 125 KKKYDVDTLDMVFLDHWKD-RYLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp HHHSCCCCEEEEEECSCGG-GHHHHHHHHHHTTCEEEEEEEEE
T ss_pred hhcccccccceeeeccccc-ccccHHHHHHHhCccCCCcEEEE
Confidence 3446799998863211 11223346777889999998876
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.42 E-value=5.9e-13 Score=87.38 Aligned_cols=98 Identities=11% Similarity=0.057 Sum_probs=78.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|.++..+++..+ ..+++++|..+ .+ +..... .+++++.+|+.+ +.+
T Consensus 84 ~vlDiGGG~G~~~~~l~~~~P-----------~l~~~v~Dlp~-vi-------~~~~~~----~ri~~~~gd~~~-~~p- 138 (244)
T d1fp1d2 84 TLVDVGGGSGRNLELIISKYP-----------LIKGINFDLPQ-VI-------ENAPPL----SGIEHVGGDMFA-SVP- 138 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEECHH-HH-------TTCCCC----TTEEEEECCTTT-CCC-
T ss_pred EEEEecCCCcHHHHHHHHHCC-----------CCeEEEecchh-hh-------hccCCC----CCeEEecCCccc-ccc-
Confidence 589999999999999999875 78999999733 32 222222 389999999765 233
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
..|+|++.+++|++++ ..++|+++++.|+|||++++.|...+.
T Consensus 139 -~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~ 183 (244)
T d1fp1d2 139 -QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPE 183 (244)
T ss_dssp -CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECS
T ss_pred -cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecC
Confidence 4699999999999985 458899999999999999999976544
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=6.2e-13 Score=85.94 Aligned_cols=102 Identities=15% Similarity=0.166 Sum_probs=85.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+|||+||++|..+..+++.++ .+.+++.+|.+++..+.++++++..+..+ +++++.+|+.+. +
T Consensus 62 ~vLEiGt~~GyStl~~a~al~----------~~g~i~tie~~~~~~~~A~~~~~~ag~~~----~i~~~~Gda~e~l~~~ 127 (219)
T d2avda1 62 KALDLGTFTGYSALALALALP----------ADGRVVTCEVDAQPPELGRPLWRQAEAEH----KIDLRLKPALETLDEL 127 (219)
T ss_dssp EEEEECCTTSHHHHHHHTTSC----------TTCEEEEEESCSHHHHHHHHHHHHTTCTT----TEEEEESCHHHHHHHH
T ss_pred eEEEEechhhHHHHHHHHhCC----------CCceEEEEeechhHHHHHHHHHHhcCccc----eEEEEEeehhhcchhh
Confidence 689999999999999999875 46799999999999999999999988875 899999986553 1
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+||+|+... .-.+....+..+.+.|+|||++++-+
T Consensus 128 ~~~~~~~~fD~ifiD~---dk~~y~~~~~~~~~lL~~GGvii~Dn 169 (219)
T d2avda1 128 LAAGEAGTFDVAVVDA---DKENCSAYYERCLQLLRPGGILAVLR 169 (219)
T ss_dssp HHTTCTTCEEEEEECS---CSTTHHHHHHHHHHHEEEEEEEEEEC
T ss_pred hhhcccCCccEEEEeC---CHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 2356899999864 33456777888999999999998743
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.40 E-value=3.6e-13 Score=82.51 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=77.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
+|||+|||+|.++..++.. ...+++++|.++.+++.+++++...+..+ +++++..|..+. ...
T Consensus 17 ~vlDl~~GtG~~~iea~~r------------ga~~v~~ve~~~~a~~~~~~n~~~~~~~~----~~~ii~~D~~~~l~~~ 80 (152)
T d2esra1 17 RVLDLFAGSGGLAIEAVSR------------GMSAAVLVEKNRKAQAIIQDNIIMTKAEN----RFTLLKMEAERAIDCL 80 (152)
T ss_dssp EEEEETCTTCHHHHHHHHT------------TCCEEEEECCCHHHHHHHHHHHHTTTCGG----GEEEECSCHHHHHHHB
T ss_pred eEEEcCCccCHHHHHHHHh------------Ccceeeeehhchhhhhhhhhhhhhccccc----chhhhccccccccccc
Confidence 6899999999999877665 24689999999999999999998877664 799999997764 344
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEecc
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFS 122 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~ 122 (131)
.++||+|++..... .......+..+. ++|+|+|.+++ |+.
T Consensus 81 ~~~fDiIf~DPPy~-~~~~~~~l~~i~~~~~L~~~g~iii-E~~ 122 (152)
T d2esra1 81 TGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVC-ETD 122 (152)
T ss_dssp CSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEE-EEE
T ss_pred ccccceeEechhhc-cchHHHHHHHHHHCCCcCCCeEEEE-EeC
Confidence 67899998853321 223344455443 56999999865 444
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.39 E-value=9.8e-13 Score=83.53 Aligned_cols=114 Identities=13% Similarity=0.058 Sum_probs=73.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc------------------cCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL------------------FKVP-- 61 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~------------------~~~~-- 61 (131)
+|+++|||+|.-...++..+.+.... .....+++++|+|+.+++.|++..-.. ....
T Consensus 27 rIwsaGCstGeE~YSlA~~l~e~~~~---~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 27 RVWSAAASTGEEPYSIAITLADALGM---APGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp EEEESCCTTTHHHHHHHHHHHHHHCS---CTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred EEEEeCCCCchhHHHHHHHHHHhhhh---cCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 68999999998765554433211000 002468999999999999997532110 0000
Q ss_pred ------CCCCceeEEecccccC-CCCCCCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEE
Q psy890 62 ------VPNPRLRFLEANAEEL-PIESDSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 62 ------~~~~~~~~~~~d~~~~-~~~~~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~ 118 (131)
.....+.+...+.... +.+.+.||+|+|.+++..++. ..+++.++.+.|+|||+|++
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~l 169 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFA 169 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEE
Confidence 0000123333333322 233468999999999998874 46899999999999999876
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.35 E-value=3.5e-12 Score=83.67 Aligned_cols=98 Identities=13% Similarity=0.078 Sum_probs=77.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|.++..+++..+ ..+++++|..+ .++ ..... .+++++..|+.+. .
T Consensus 83 ~vvDvGGG~G~~~~~l~~~~P-----------~l~~~v~Dlp~-vi~-------~~~~~----~rv~~~~gD~f~~-~-- 136 (244)
T d1fp2a2 83 SIVDVGGGTGTTAKIICETFP-----------KLKCIVFDRPQ-VVE-------NLSGS----NNLTYVGGDMFTS-I-- 136 (244)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TCEEEEEECHH-HHT-------TCCCB----TTEEEEECCTTTC-C--
T ss_pred EEEEecCCccHHHHHHHHhCC-----------CCeEEEecCHH-HHH-------hCccc----CceEEEecCcccC-C--
Confidence 589999999999999999975 78999999833 322 22222 2899999998753 2
Q ss_pred CCeeEEEEccccccccCH--HHHHHHHHHhccCC---cEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRI--DKALSEAYRVLKPG---GRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~--~~~l~~~~~~L~p~---G~l~~~~~~~~~ 125 (131)
..+|++++.+++|++++. .++|+++++.|+|| |++++.|...++
T Consensus 137 p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~ 185 (244)
T d1fp2a2 137 PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDK 185 (244)
T ss_dssp CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECT
T ss_pred CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCC
Confidence 357999999999999865 57899999999998 788888765443
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.33 E-value=3e-12 Score=86.88 Aligned_cols=108 Identities=8% Similarity=0.021 Sum_probs=83.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+.||+|.++..++.. ...+|+++|.|+.+++.++++++.+++.. .+++++..|..+.
T Consensus 147 ~VLdlf~~~G~~sl~aa~~------------ga~~V~~vD~s~~a~~~a~~N~~~n~l~~---~~~~~i~~d~~~~l~~~ 211 (317)
T d2b78a2 147 TVLNLFSYTAAFSVAAAMG------------GAMATTSVDLAKRSRALSLAHFEANHLDM---ANHQLVVMDVFDYFKYA 211 (317)
T ss_dssp EEEEETCTTTHHHHHHHHT------------TBSEEEEEESCTTHHHHHHHHHHHTTCCC---TTEEEEESCHHHHHHHH
T ss_pred ceeecCCCCcHHHHHHHhC------------CCceEEEecCCHHHHHHHHHHHHHhcccC---cceEEEEccHHHHHHHH
Confidence 6899999999999876653 25689999999999999999999887753 2789999997653
Q ss_pred CCCCCCeeEEEEccc-c--------ccccCHHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 78 PIESDSYSAYTIAFG-I--------RNVTRIDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~-l--------~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
.....+||+|++.-. + ....+....+..+.++|+|||+++++.++..
T Consensus 212 ~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~~ 267 (317)
T d2b78a2 212 RRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 267 (317)
T ss_dssp HHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 123568999998422 1 1112456788889999999999999877644
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.31 E-value=1.1e-11 Score=82.16 Aligned_cols=107 Identities=12% Similarity=-0.037 Sum_probs=76.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
.++|+|||+|..+..++.. +..+++++|+|+.+++.|+++.+..+... ++.+...|..+. +..
T Consensus 113 ~vld~g~GsG~i~~~la~~------------~~~~v~a~Dis~~Al~~A~~Na~~~~~~~----~~~i~~~~~~~~~~~~ 176 (271)
T d1nv8a_ 113 TVADIGTGSGAIGVSVAKF------------SDAIVFATDVSSKAVEIARKNAERHGVSD----RFFVRKGEFLEPFKEK 176 (271)
T ss_dssp EEEEESCTTSHHHHHHHHH------------SSCEEEEEESCHHHHHHHHHHHHHTTCTT----SEEEEESSTTGGGGGG
T ss_pred EEEEeeeeeehhhhhhhhc------------ccceeeechhhhhHHHHHHHHHHHcCCCc----eeEEeecccccccccc
Confidence 5899999999998888754 36789999999999999999999888764 778888887653 233
Q ss_pred CCCeeEEEEcccc--c---------ccc--------CHHHHHHH-HHHhccCCcEEEEEeccCCC
Q psy890 81 SDSYSAYTIAFGI--R---------NVT--------RIDKALSE-AYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 81 ~~~~D~i~~~~~l--~---------~~~--------~~~~~l~~-~~~~L~p~G~l~~~~~~~~~ 125 (131)
.++||+|+++-.- . +-| +...++.+ +.++|+|||++++ |++...
T Consensus 177 ~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~-Eig~~Q 240 (271)
T d1nv8a_ 177 FASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM-EIGEDQ 240 (271)
T ss_dssp TTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE-ECCTTC
T ss_pred cCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEE-EECHHH
Confidence 4689999996321 0 000 10112222 4567999998754 666544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.30 E-value=8.4e-12 Score=80.91 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=84.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-- 78 (131)
+|||+|+++|..+..+++.++ ...+++.+|.+++....|++++...++.+ +++++.+++.+. +
T Consensus 62 ~iLEiGT~~GyStl~la~al~----------~~g~v~tie~~~~~~~~A~~~~~~~g~~~----~i~~~~g~a~~~L~~l 127 (227)
T d1susa1 62 NTMEIGVYTGYSLLATALAIP----------EDGKILAMDINKENYELGLPVIKKAGVDH----KIDFREGPALPVLDEM 127 (227)
T ss_dssp EEEEECCGGGHHHHHHHHHSC----------TTCEEEEEESCCHHHHHHHHHHHHTTCGG----GEEEEESCHHHHHHHH
T ss_pred cEEEecchhhhhHHHHHhhCC----------CCcEEEEEeccchhHHHHHHHHHHhcccc----ceeeeehHHHHHHHHH
Confidence 689999999999999999876 46899999999999999999999988775 899999997653 1
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|+.-. +-.+....+..+.++|+|||++++-
T Consensus 128 ~~~~~~~~~fD~iFiDa---~k~~y~~~~e~~~~ll~~gGiii~D 169 (227)
T d1susa1 128 IKDEKNHGSYDFIFVDA---DKDNYLNYHKRLIDLVKVGGVIGYD 169 (227)
T ss_dssp HHCGGGTTCBSEEEECS---CSTTHHHHHHHHHHHBCTTCCEEEE
T ss_pred HhccccCCceeEEEecc---chhhhHHHHHHHHhhcCCCcEEEEc
Confidence 1246899999864 3356678889999999999999773
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.29 E-value=3.4e-12 Score=79.52 Aligned_cols=102 Identities=9% Similarity=0.077 Sum_probs=69.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc--CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE--LPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~--~~~ 79 (131)
+|||++||+|.++..++.. +.+++++|.++.+++.++++++..+... ++.....|... ...
T Consensus 44 ~vLDl~~G~G~~~i~a~~~-------------ga~vv~vD~~~~a~~~~~~N~~~~~~~~----~v~~~~~d~~~~~~~~ 106 (171)
T d1ws6a1 44 RFLDPFAGSGAVGLEAASE-------------GWEAVLVEKDPEAVRLLKENVRRTGLGA----RVVALPVEVFLPEAKA 106 (171)
T ss_dssp EEEEETCSSCHHHHHHHHT-------------TCEEEEECCCHHHHHHHHHHHHHHTCCC----EEECSCHHHHHHHHHH
T ss_pred eEEEeccccchhhhhhhhc-------------cchhhhcccCHHHHhhhhHHHHhhcccc----ceeeeehhcccccccc
Confidence 6899999999998877664 5689999999999999999999877643 44444444211 123
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHH--HhccCCcEEEEEeccC
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAY--RVLKPGGRFLCLEFSH 123 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~--~~L~p~G~l~~~~~~~ 123 (131)
...+||+|++.-..+. +....+.++. .+|+|||++++ |+..
T Consensus 107 ~~~~fD~If~DPPY~~--~~~~~l~~l~~~~ll~~~g~ivi-e~~~ 149 (171)
T d1ws6a1 107 QGERFTVAFMAPPYAM--DLAALFGELLASGLVEAGGLYVL-QHPK 149 (171)
T ss_dssp TTCCEEEEEECCCTTS--CTTHHHHHHHHHTCEEEEEEEEE-EEET
T ss_pred cCCccceeEEcccccc--CHHHHHHHHHHcCCcCCCeEEEE-EecC
Confidence 4568999998533221 2223334332 47899998765 4443
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.1e-11 Score=78.74 Aligned_cols=78 Identities=4% Similarity=-0.136 Sum_probs=63.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
++||+|||+|..+..++...+ ..+++++|+|+.+++.|+++++..++.+ ++.++..+....-
T Consensus 64 ~~LDiGtGsg~I~~~l~~~~~-----------~~~~~~~Di~~~al~~A~~N~~~n~l~~----~~~~~~~~~~~~~~~~ 128 (250)
T d2h00a1 64 RGIDIGTGASCIYPLLGATLN-----------GWYFLATEVDDMCFNYAKKNVEQNNLSD----LIKVVKVPQKTLLMDA 128 (250)
T ss_dssp EEEEESCTTTTHHHHHHHHHH-----------CCEEEEEESCHHHHHHHHHHHHHTTCTT----TEEEEECCTTCSSTTT
T ss_pred eEEEeCCCchHHHHHHHHhCC-----------CccccceecCHHHHHHHHHHHHHhCCCc----ceeeeeeccHHhhhhh
Confidence 589999999999999998876 7899999999999999999999988775 7887766543321
Q ss_pred ---CCCCCeeEEEEccccc
Q psy890 79 ---IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~ 94 (131)
...++||+|+|+-...
T Consensus 129 ~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 129 LKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp STTCCSCCBSEEEECCCCC
T ss_pred hhhcccCceeEEEecCccc
Confidence 2346799999975544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.25 E-value=1.5e-11 Score=82.91 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=77.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+.||+|.++..++.. +.+|+++|.|+.+++.++++.+.+++.+ .+++++..|+.+.-
T Consensus 135 rVLdlf~~tG~~sl~aa~~-------------GA~V~~VD~s~~al~~a~~N~~ln~~~~---~~~~~i~~D~~~~l~~~ 198 (309)
T d2igta1 135 KVLNLFGYTGVASLVAAAA-------------GAEVTHVDASKKAIGWAKENQVLAGLEQ---APIRWICEDAMKFIQRE 198 (309)
T ss_dssp EEEEETCTTCHHHHHHHHT-------------TCEEEEECSCHHHHHHHHHHHHHHTCTT---SCEEEECSCHHHHHHHH
T ss_pred eEEEecCCCcHHHHHHHhC-------------CCeEEEEeChHHHHHHHHHhhhhhcccC---CcEEEEeCCHHHhHHHH
Confidence 6999999999999988764 5689999999999999999998877654 26899999977641
Q ss_pred -CCCCCeeEEEEc---ccccc------c-cCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IESDSYSAYTIA---FGIRN------V-TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~---~~l~~------~-~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.....||+|++. +.-.. . .+....+..+.++|+|+|.++++
T Consensus 199 ~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~ 250 (309)
T d2igta1 199 ERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVL 250 (309)
T ss_dssp HHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEE
T ss_pred hhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 235789999983 21110 1 13355667788899999875554
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=4.5e-11 Score=75.09 Aligned_cols=99 Identities=13% Similarity=0.082 Sum_probs=75.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PIE 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~ 80 (131)
++||++||+|.++..++.. +..+++.+|.++.+++.++++++..... +.+++..|+.+. ...
T Consensus 46 ~vLDlfaGsG~~giealsr------------Ga~~v~~VE~~~~a~~~~k~N~~~~~~~-----~~~ii~~d~~~~l~~~ 108 (183)
T d2fpoa1 46 QCLDCFAGSGALGLEALSR------------YAAGATLIEMDRAVSQQLIKNLATLKAG-----NARVVNSNAMSFLAQK 108 (183)
T ss_dssp EEEETTCTTCHHHHHHHHT------------TCSEEEEECSCHHHHHHHHHHHHHTTCC-----SEEEECSCHHHHHSSC
T ss_pred hhhhhhccccceeeeEEec------------CcceeEEEEEeechhhHHHHHHhhcccc-----ceeeeeeccccccccc
Confidence 6899999999999987775 3568999999999999999999876544 788888886654 344
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLC 118 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~ 118 (131)
..+||+|++.-... .......+..+.+ +|+++|.+++
T Consensus 109 ~~~fDlIf~DPPY~-~~~~~~~l~~l~~~~~L~~~~iIii 147 (183)
T d2fpoa1 109 GTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYV 147 (183)
T ss_dssp CCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ccccCEEEEcCccc-cchHHHHHHHHHHCCCCCCCeEEEE
Confidence 57899999964422 2344556666654 5899998866
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.23 E-value=2.6e-11 Score=79.35 Aligned_cols=97 Identities=12% Similarity=0.054 Sum_probs=76.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|.++..+++..+ ..+++++|..+. ++..... .++++...|+.+ +.+
T Consensus 84 ~vvDvGGG~G~~~~~l~~~~P-----------~l~~~v~Dlp~v--------i~~~~~~----~r~~~~~~d~~~-~~P- 138 (243)
T d1kyza2 84 SLVDVGGGTGAVINTIVSKYP-----------TIKGINFDLPHV--------IEDAPSY----PGVEHVGGDMFV-SIP- 138 (243)
T ss_dssp EEEEETCTTSHHHHHHHHHCT-----------TSEEEEEECTTT--------TTTCCCC----TTEEEEECCTTT-CCC-
T ss_pred EEEEecCCCcHHHHHHHHHCC-----------CCeEEEcccHHh--------hhhcccC----CceEEecccccc-cCC-
Confidence 589999999999999999975 789999998652 2222222 389999999765 233
Q ss_pred CCeeEEEEccccccccC--HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 82 DSYSAYTIAFGIRNVTR--IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~--~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
..|.+++.+++|.+++ ...+|+++++.|+|||++++.|...+
T Consensus 139 -~ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~ 182 (243)
T d1kyza2 139 -KADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILP 182 (243)
T ss_dssp -CCSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEEC
T ss_pred -CcceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEec
Confidence 3577888999999874 56889999999999999999886543
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.21 E-value=3.2e-11 Score=76.51 Aligned_cols=67 Identities=16% Similarity=0.197 Sum_probs=54.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++.. +..+++++|+++.+++.++++.. ++.++..|+.+++
T Consensus 51 ~VLDlGcGtG~l~i~a~~~------------ga~~V~~vDid~~a~~~ar~N~~----------~~~~~~~D~~~l~--- 105 (197)
T d1ne2a_ 51 SVIDAGTGNGILACGSYLL------------GAESVTAFDIDPDAIETAKRNCG----------GVNFMVADVSEIS--- 105 (197)
T ss_dssp EEEEETCTTCHHHHHHHHT------------TBSEEEEEESCHHHHHHHHHHCT----------TSEEEECCGGGCC---
T ss_pred EEEEeCCCCcHHHHHHHHc------------CCCcccccccCHHHHHHHHHccc----------cccEEEEehhhcC---
Confidence 6999999999988766554 24679999999999999998753 6789999987754
Q ss_pred CCeeEEEEcccc
Q psy890 82 DSYSAYTIAFGI 93 (131)
Q Consensus 82 ~~~D~i~~~~~l 93 (131)
++||+|+++-.+
T Consensus 106 ~~fD~Vi~NPPf 117 (197)
T d1ne2a_ 106 GKYDTWIMNPPF 117 (197)
T ss_dssp CCEEEEEECCCC
T ss_pred CcceEEEeCccc
Confidence 679999997443
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.18 E-value=6.6e-11 Score=75.37 Aligned_cols=71 Identities=10% Similarity=0.118 Sum_probs=58.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||+|||+|.++..++.. +..+++++|+++.++..++++++..+. +..++..|..++ .
T Consensus 49 ~vLDlg~GtG~l~i~a~~~------------g~~~v~~vdi~~~~~~~a~~N~~~~~~------~~~~~~~d~~~~---~ 107 (201)
T d1wy7a1 49 VVADLGAGTGVLSYGALLL------------GAKEVICVEVDKEAVDVLIENLGEFKG------KFKVFIGDVSEF---N 107 (201)
T ss_dssp EEEEETCTTCHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHTGGGTT------SEEEEESCGGGC---C
T ss_pred EEEECcCcchHHHHHHHHc------------CCCEEEEEcCcHHHHHHHHHHHHHcCC------CceEEECchhhh---C
Confidence 6999999999998877654 246899999999999999999887652 678888888775 3
Q ss_pred CCeeEEEEcccc
Q psy890 82 DSYSAYTIAFGI 93 (131)
Q Consensus 82 ~~~D~i~~~~~l 93 (131)
++||+|+++-..
T Consensus 108 ~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 108 SRVDIVIMNPPF 119 (201)
T ss_dssp CCCSEEEECCCC
T ss_pred CcCcEEEEcCcc
Confidence 579999996554
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.15 E-value=1.1e-10 Score=73.28 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=79.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC----
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---- 77 (131)
+|||+.||+|.++..++.. +..+++++|.++.+++.+++++...+..+ ++.++..|+.+.
T Consensus 44 ~vLDlfaGsG~~g~ea~sr------------Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~----~~~i~~~D~~~~l~~~ 107 (182)
T d2fhpa1 44 MALDLYSGSGGLAIEAVSR------------GMDKSICIEKNFAALKVIKENIAITKEPE----KFEVRKMDANRALEQF 107 (182)
T ss_dssp EEEETTCTTCHHHHHHHHT------------TCSEEEEEESCHHHHHHHHHHHHHHTCGG----GEEEEESCHHHHHHHH
T ss_pred EEEEcccccccccceeeec------------chhHHHHHHHHHHHHHHHHHHhhhhhccc----ccccccccchhhhhhh
Confidence 6899999999999988776 35689999999999999999998766554 799999997653
Q ss_pred CCCCCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEEEeccCC
Q psy890 78 PIESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCLEFSHV 124 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~~~~~~~ 124 (131)
.....+||+|++.-.. ........+..+.+ +|+++|+++ +|+...
T Consensus 108 ~~~~~~fDlIflDPPY-~~~~~~~~l~~i~~~~~L~~~giIi-~E~~~~ 154 (182)
T d2fhpa1 108 YEEKLQFDLVLLDPPY-AKQEIVSQLEKMLERQLLTNEAVIV-CETDKT 154 (182)
T ss_dssp HHTTCCEEEEEECCCG-GGCCHHHHHHHHHHTTCEEEEEEEE-EEEETT
T ss_pred cccCCCcceEEechhh-hhhHHHHHHHHHHHCCCCCCCEEEE-EEcCCC
Confidence 1234679999985432 23445666777654 699999875 465443
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.11 E-value=1e-10 Score=79.07 Aligned_cols=103 Identities=16% Similarity=0.158 Sum_probs=77.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc---cCCCCCCCceeEEecccccC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL---FKVPVPNPRLRFLEANAEEL- 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~~~~- 77 (131)
+||.+|.|.|..+..+++..+ ..+++++|+++.+++.+++.+... ...+ ++++++..|..+.
T Consensus 80 ~VLiiG~G~G~~~~~ll~~~~-----------~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d---~rv~i~~~Da~~~l 145 (312)
T d1uira_ 80 RVLIVGGGEGATLREVLKHPT-----------VEKAVMVDIDGELVEVAKRHMPEWHQGAFDD---PRAVLVIDDARAYL 145 (312)
T ss_dssp EEEEEECTTSHHHHHHTTSTT-----------CCEEEEEESCHHHHHHHHHHCHHHHTTGGGC---TTEEEEESCHHHHH
T ss_pred eEEEeCCCchHHHHHHHhcCC-----------cceEEEecCCHHHHHHHHhcCcccccCccCC---CceEEEEchHHHHh
Confidence 589999999999988887643 679999999999999999987542 1222 4899999997664
Q ss_pred CCCCCCeeEEEEccc--cc--ccc-C--HHHHHHHHHHhccCCcEEEE
Q psy890 78 PIESDSYSAYTIAFG--IR--NVT-R--IDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 78 ~~~~~~~D~i~~~~~--l~--~~~-~--~~~~l~~~~~~L~p~G~l~~ 118 (131)
....++||+|++-.. .. ... . -..+++.+++.|+|||++++
T Consensus 146 ~~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 146 ERTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp HHCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred hhcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 233467999997432 11 111 1 25789999999999999876
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.03 E-value=4.5e-10 Score=74.67 Aligned_cols=103 Identities=10% Similarity=0.019 Sum_probs=75.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhcc--------CCCCCCCceeEEecc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLF--------KVPVPNPRLRFLEAN 73 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~d 73 (131)
+||.+|+|.|..+..+++. +..+++++|+++.+++.+++.+.... ..+ ++++++..|
T Consensus 75 ~vLiiG~G~G~~~~~~l~~------------~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d---~rv~i~~~D 139 (276)
T d1mjfa_ 75 RVLVIGGGDGGTVREVLQH------------DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKH---EKAKLTIGD 139 (276)
T ss_dssp EEEEEECTTSHHHHHHTTS------------CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCC---SSEEEEESC
T ss_pred eEEEecCCchHHHHHHHHh------------CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCC---CCceEEECh
Confidence 5899999999998888764 24689999999999999998664321 122 389999999
Q ss_pred cccCCCCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 74 AEELPIESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 74 ~~~~~~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....-...++||+|++-..-...+ --..++..+++.|+|+|++++-
T Consensus 140 a~~~l~~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q 189 (276)
T d1mjfa_ 140 GFEFIKNNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQ 189 (276)
T ss_dssp HHHHHHHCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHhccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEEe
Confidence 765422346799999844322111 1257899999999999998763
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.98 E-value=3.5e-09 Score=71.74 Aligned_cols=106 Identities=13% Similarity=0.120 Sum_probs=76.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||.+||+|.+...+.+.+..... ...+++|+|+++.++..|+.+...... ...+...|.... ...
T Consensus 120 ~vlDp~~GsG~~l~~~~~~l~~~~~------~~~~~~g~di~~~~~~~a~~~~~~~~~------~~~~~~~d~~~~-~~~ 186 (328)
T d2f8la1 120 SILDPACGTANLLTTVINQLELKGD------VDVHASGVDVDDLLISLALVGADLQRQ------KMTLLHQDGLAN-LLV 186 (328)
T ss_dssp EEEETTCTTSHHHHHHHHHHHTTSS------CEEEEEEEESCHHHHHHHHHHHHHHTC------CCEEEESCTTSC-CCC
T ss_pred EEEeCCCCcchhHHHHHHHHHhccC------ccceEEEecccHHHHHHHHHHHHHhhh------hhhhhccccccc-ccc
Confidence 6999999999999888877642210 245899999999999999888766542 455666664432 345
Q ss_pred CCeeEEEEccccccccC------------------HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTR------------------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~------------------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|+++-....... ...++.++.+.|+|||++.++-
T Consensus 187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~ 243 (328)
T d2f8la1 187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLV 243 (328)
T ss_dssp CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEe
Confidence 68999999755432211 2346899999999999977653
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.96 E-value=1.7e-09 Score=72.39 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=77.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||-+|.|.|..+..+++..+ ..+++++|+++.+++.+++.++.. .+.+ ++++++..|..+. .
T Consensus 92 ~VLiiGgG~G~~~r~~l~~~~-----------~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d---~rv~v~~~Da~~~l~ 157 (295)
T d1inla_ 92 KVLIIGGGDGGTLREVLKHDS-----------VEKAILCEVDGLVIEAARKYLKQTSCGFDD---PRAEIVIANGAEYVR 157 (295)
T ss_dssp EEEEEECTTCHHHHHHTTSTT-----------CSEEEEEESCHHHHHHHHHHCHHHHGGGGC---TTEEEEESCHHHHGG
T ss_pred eEEEecCCchHHHHHHHhcCC-----------CceEEEecCCHHHHHHHHHHHHhhcccccC---CCcEEEhhhHHHHHh
Confidence 589999999999988888643 678999999999999999876532 2233 4899999996654 2
Q ss_pred CCCCCeeEEEEcccccc-cc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRN-VT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~-~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...+.||+|++-..-.. .+ --..+++.+++.|+|+|++++-
T Consensus 158 ~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q 203 (295)
T d1inla_ 158 KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAE 203 (295)
T ss_dssp GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEe
Confidence 33467999998543221 11 1367899999999999998764
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.96 E-value=1.9e-09 Score=69.97 Aligned_cols=69 Identities=12% Similarity=0.100 Sum_probs=56.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||||||+|.+|..+++. +.+++++|+++.+++..++++.... +++++.+|+.+.+++.
T Consensus 24 ~VlEIGpG~G~LT~~Ll~~-------------~~~v~avE~D~~l~~~l~~~~~~~~-------n~~i~~~D~l~~~~~~ 83 (235)
T d1qama_ 24 NIFEIGSGKGHFTLELVQR-------------CNFVTAIEIDHKLCKTTENKLVDHD-------NFQVLNKDILQFKFPK 83 (235)
T ss_dssp EEEEECCTTSHHHHHHHHH-------------SSEEEEECSCHHHHHHHHHHTTTCC-------SEEEECCCGGGCCCCS
T ss_pred eEEEECCCchHHHHHHHhC-------------cCceEEEeeccchHHHHHHHhhccc-------chhhhhhhhhhccccc
Confidence 6899999999999999986 5689999999999999998876544 8999999999887654
Q ss_pred CCeeEEEEc
Q psy890 82 DSYSAYTIA 90 (131)
Q Consensus 82 ~~~D~i~~~ 90 (131)
.....|+.+
T Consensus 84 ~~~~~vv~N 92 (235)
T d1qama_ 84 NQSYKIFGN 92 (235)
T ss_dssp SCCCEEEEE
T ss_pred cccceeeee
Confidence 443445443
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.95 E-value=1.9e-09 Score=71.50 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=79.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||-+|.|.|..+..++++.+ ..+++++|+++++++.+++.++.. ...+ ++++++..|.... .
T Consensus 78 ~vLiiGgG~G~~~~~~l~~~~-----------~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d---~r~~i~~~D~~~~l~ 143 (274)
T d1iy9a_ 78 HVLVVGGGDGGVIREILKHPS-----------VKKATLVDIDGKVIEYSKKFLPSIAGKLDD---PRVDVQVDDGFMHIA 143 (274)
T ss_dssp EEEEESCTTCHHHHHHTTCTT-----------CSEEEEEESCHHHHHHHHHHCHHHHTTTTS---TTEEEEESCSHHHHH
T ss_pred eEEecCCCCcHHHHHHHhcCC-----------cceEEEecCCHHHHHHHHHhChhhcccccC---CCeEEEechHHHHHh
Confidence 589999999999999988743 679999999999999999987532 2232 4899999996654 2
Q ss_pred CCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|+.-..-..-. --..+++.+++.|+|+|+++.-
T Consensus 144 ~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q 188 (274)
T d1iy9a_ 144 KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQ 188 (274)
T ss_dssp TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEE
T ss_pred hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEEe
Confidence 3456899999854321111 1357899999999999998763
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.92 E-value=5.9e-09 Score=65.20 Aligned_cols=105 Identities=14% Similarity=0.175 Sum_probs=75.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL---P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~ 78 (131)
++||+.||||.++.+.+.. +..+++.+|.+...+...+++++..+... ....+...|.... .
T Consensus 46 ~vLDlFaGsG~~glEalSR------------GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~---~~~~~~~~d~~~~l~~~ 110 (183)
T d2ifta1 46 ECLDGFAGSGSLGFEALSR------------QAKKVTFLELDKTVANQLKKNLQTLKCSS---EQAEVINQSSLDFLKQP 110 (183)
T ss_dssp EEEETTCTTCHHHHHHHHT------------TCSEEEEECSCHHHHHHHHHHHHHTTCCT---TTEEEECSCHHHHTTSC
T ss_pred eEeecccCccceeeeeeee------------cceeeEEeecccchhhhHhhHHhhhcccc---ccccccccccccccccc
Confidence 6899999999999998876 45689999999999999999998766543 1466666664432 2
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHH--hccCCcEEEEEeccC
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYR--VLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~--~L~p~G~l~~~~~~~ 123 (131)
....+||+|++--... .......+..+.. +|+++|++++ |+..
T Consensus 111 ~~~~~fDlIFlDPPY~-~~~~~~~l~~l~~~~~L~~~~liii-E~~~ 155 (183)
T d2ifta1 111 QNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYV-ETEK 155 (183)
T ss_dssp CSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE-EEES
T ss_pred ccCCcccEEEechhHh-hhhHHHHHHHHHHhCCcCCCcEEEE-EecC
Confidence 3345799998854322 2334556666654 6899998865 5544
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=2.1e-09 Score=71.64 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=77.1
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||-+|.|.|..+..+++..+ ..+++++|+++.+++.+++.++.. ...+ ++++++..|.... .
T Consensus 81 ~vLiiGgG~G~~~~~~l~~~~-----------~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d---~rv~i~~~Da~~~l~ 146 (285)
T d2o07a1 81 KVLIIGGGDGGVLREVVKHPS-----------VESVVQCEIDEDVIQVSKKFLPGMAIGYSS---SKLTLHVGDGFEFMK 146 (285)
T ss_dssp EEEEEECTTSHHHHHHTTCTT-----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGC---TTEEEEESCHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHcCC-----------cceeeeccCCHHHHHHHHhhchhhccccCC---CCceEEEccHHHHHh
Confidence 589999999999999888753 679999999999999999877531 2222 4899999996654 2
Q ss_pred CCCCCeeEEEEccccccc-c---CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNV-T---RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~-~---~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++-..-... + --..+++.+++.|+|+|++++-
T Consensus 147 ~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 191 (285)
T d2o07a1 147 QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQ 191 (285)
T ss_dssp TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEEE
T ss_pred cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEEe
Confidence 345689999985321111 1 1246799999999999999764
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.89 E-value=4.5e-09 Score=70.15 Aligned_cols=104 Identities=16% Similarity=0.175 Sum_probs=78.0
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~- 78 (131)
+||-+|.|.|.....+++..+ ..+++++|+++++++.+++-++.. ...+ ++++++..|....-
T Consensus 83 ~VLiiGgG~G~~~r~~l~~~~-----------~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~---~r~~i~~~Da~~~l~ 148 (290)
T d1xj5a_ 83 KVLVIGGGDGGVLREVARHAS-----------IEQIDMCEIDKMVVDVSKQFFPDVAIGYED---PRVNLVIGDGVAFLK 148 (290)
T ss_dssp EEEEETCSSSHHHHHHTTCTT-----------CCEEEEEESCHHHHHHHHHHCHHHHGGGGS---TTEEEEESCHHHHHH
T ss_pred ceEEecCCchHHHHHHHhccc-----------ceeeEEecCCHHHHHHHHHhchhhhccccC---CCcEEEEccHHHHHh
Confidence 589999999999998888753 568999999999999999876432 2222 38999999965542
Q ss_pred -CCCCCeeEEEEcccccc-cc---CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 -IESDSYSAYTIAFGIRN-VT---RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~-~~---~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|+.-..-.. .+ --..+++.+++.|+|+|++++-
T Consensus 149 ~~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q 194 (290)
T d1xj5a_ 149 NAAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 194 (290)
T ss_dssp TSCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred hccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEe
Confidence 33468999998433211 11 1267899999999999999874
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.89 E-value=5.7e-09 Score=65.20 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=80.4
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+.++|..+|.|..+..+++. ..+|+++|.++.++..+++... .++.++..++.++.
T Consensus 20 ~~~vD~T~G~GGhs~~iL~~-------------~~~viaiD~D~~ai~~a~~~~~---------~~~~~~~~~f~~~~~~ 77 (182)
T d1wg8a2 20 GVYVDATLGGAGHARGILER-------------GGRVIGLDQDPEAVARAKGLHL---------PGLTVVQGNFRHLKRH 77 (182)
T ss_dssp CEEEETTCTTSHHHHHHHHT-------------TCEEEEEESCHHHHHHHHHTCC---------TTEEEEESCGGGHHHH
T ss_pred CEEEEeCCCCcHHHHHHhcc-------------cCcEEEEhhhhhHHHHHhhccc---------cceeEeehHHHHHHHH
Confidence 46899999999999988875 4689999999999998876421 27888888877653
Q ss_pred ---CCCCCeeEEEEcccccccc---------CHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 79 ---IESDSYSAYTIAFGIRNVT---------RIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~---------~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
...+.+|.|+...++..+. .....|......|+|||++.+..+...+
T Consensus 78 l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E 136 (182)
T d1wg8a2 78 LAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE 136 (182)
T ss_dssp HHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred HHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence 3346799999977765442 3456788889999999999998876544
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.89 E-value=2.2e-09 Score=72.20 Aligned_cols=104 Identities=14% Similarity=0.081 Sum_probs=75.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc--cCCCCCCCceeEEecccccC-C
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL--FKVPVPNPRLRFLEANAEEL-P 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~-~ 78 (131)
+||-+|.|.|..+..++++.+ ..+++++|+++.+++.+++.++.. .+.+ ++++++..|..+. .
T Consensus 109 ~VLIiGgG~G~~~rellk~~~-----------v~~v~~VEID~~Vv~~a~~~~~~~~~~~~d---prv~i~i~Da~~~l~ 174 (312)
T d2b2ca1 109 RVLIIGGGDGGILREVLKHES-----------VEKVTMCEIDEMVIDVAKKFLPGMSCGFSH---PKLDLFCGDGFEFLK 174 (312)
T ss_dssp EEEEESCTTSHHHHHHTTCTT-----------CCEEEEECSCHHHHHHHHHHCTTTSGGGGC---TTEEEECSCHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHcCC-----------cceEEEEcccHHHHHHHHhhchhhccccCC---CCeEEEEchHHHHHH
Confidence 589999999999999888643 578999999999999999877542 2232 4899999996654 2
Q ss_pred CCCCCeeEEEEcccccccc----CHHHHHHHHHHhccCCcEEEEE
Q psy890 79 IESDSYSAYTIAFGIRNVT----RIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~----~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...++||+|++-..-...+ --..+++.+++.|+|+|+++.-
T Consensus 175 ~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q 219 (312)
T d2b2ca1 175 NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSSQ 219 (312)
T ss_dssp HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEEE
T ss_pred hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEe
Confidence 3356899999853321111 1257799999999999999763
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.86 E-value=2.2e-08 Score=63.70 Aligned_cols=98 Identities=15% Similarity=0.134 Sum_probs=79.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+++|+|+|.|-=+..++-..+ ..+++.+|.+.--+...++.....++. +++++....++.. ..
T Consensus 68 ~ilDiGsGaG~PGi~laI~~p-----------~~~~~Lves~~KK~~FL~~~~~~L~L~-----nv~v~~~R~E~~~-~~ 130 (207)
T d1jsxa_ 68 RFIDVGTGPGLPGIPLSIVRP-----------EAHFTLLDSLGKRVRFLRQVQHELKLE-----NIEPVQSRVEEFP-SE 130 (207)
T ss_dssp EEEEETCTTTTTHHHHHHHCT-----------TSEEEEEESCHHHHHHHHHHHHHTTCS-----SEEEEECCTTTSC-CC
T ss_pred ceeeeeccCCceeeehhhhcc-----------cceEEEEecchHHHHHHHHHHHHcCCc-----ceeeeccchhhhc-cc
Confidence 589999999988887776654 789999999998888888777776665 8999988888764 34
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
.+||+|++.. +..+..++.-+.+.++++|.+++.-
T Consensus 131 ~~fD~V~sRA----~~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 131 PPFDGVISRA----FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp SCEEEEECSC----SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred cccceehhhh----hcCHHHHHHHHHHhcCCCcEEEEEC
Confidence 5799997743 4567788888999999999998864
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.83 E-value=2.8e-10 Score=74.42 Aligned_cols=73 Identities=5% Similarity=0.103 Sum_probs=60.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||||||+|.+|..+++. ..+++++|+++.+++.+++++.... +++++.+|+.+.+++.
T Consensus 32 ~VLEIGpG~G~LT~~L~~~-------------~~~v~aIE~D~~l~~~l~~~~~~~~-------n~~ii~~D~l~~~~~~ 91 (245)
T d1yuba_ 32 TVYEIGTGKGHLTTKLAKI-------------SKQVTSIELDSHLFNLSSEKLKLNT-------RVTLIHQDILQFQFPN 91 (245)
T ss_dssp EEEECSCCCSSCSHHHHHH-------------SSEEEESSSSCSSSSSSSCTTTTCS-------EEEECCSCCTTTTCCC
T ss_pred eEEEECCCccHHHHHHHhh-------------cCceeEeeecccchhhhhhhhhhcc-------chhhhhhhhhcccccc
Confidence 5899999999999999887 5689999999999888877765443 8999999999988777
Q ss_pred CCeeEEEEccccc
Q psy890 82 DSYSAYTIAFGIR 94 (131)
Q Consensus 82 ~~~D~i~~~~~l~ 94 (131)
...+.|+.+...+
T Consensus 92 ~~~~~vv~NLPY~ 104 (245)
T d1yuba_ 92 KQRYKIVGNIPYH 104 (245)
T ss_dssp SSEEEEEEECCSS
T ss_pred ceeeeEeeeeehh
Confidence 7777777765543
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.73 E-value=1.1e-07 Score=64.07 Aligned_cols=108 Identities=12% Similarity=0.102 Sum_probs=82.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
.+|||+++|+|.=+..++.... ....+++.|.++.-+...+++....+.. ++.....|....+..
T Consensus 118 ~~vlD~CAapGgKt~~l~~~~~----------~~~~i~a~d~~~~r~~~l~~~~~r~~~~-----~i~~~~~d~~~~~~~ 182 (313)
T d1ixka_ 118 EIVADMAAAPGGKTSYLAQLMR----------NDGVIYAFDVDENRLRETRLNLSRLGVL-----NVILFHSSSLHIGEL 182 (313)
T ss_dssp CEEEECCSSCSHHHHHHHHHTT----------TCSEEEEECSCHHHHHHHHHHHHHHTCC-----SEEEESSCGGGGGGG
T ss_pred ceeeecccchhhhhHhhhhhcc----------cccceeeeccCHHHHHHHHHHHHHHHhh-----ccccccccccccccc
Confidence 3689999999999998888765 3678999999999999999998887765 677777777666555
Q ss_pred CCCeeEEEEccccccc------cC----------------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 81 SDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
...||.|++-..+... ++ -.+.|.+..+.+||||+++...++-
T Consensus 183 ~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl 247 (313)
T d1ixka_ 183 NVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL 247 (313)
T ss_dssp CCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred cccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccC
Confidence 6789999883332211 10 1467888899999999988766654
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.62 E-value=2.6e-07 Score=59.74 Aligned_cols=99 Identities=20% Similarity=0.141 Sum_probs=77.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI-- 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-- 79 (131)
+++|+|+|.|-=+..++-..+ ..+++.+|.+.--+...+......++. ++.++...++....
T Consensus 73 ~ilDiGSGaGfPGi~laI~~p-----------~~~v~Lves~~KK~~FL~~v~~~L~L~-----n~~i~~~R~E~~~~~~ 136 (239)
T d1xdza_ 73 TICDVGAGAGFPSLPIKICFP-----------HLHVTIVDSLNKRITFLEKLSEALQLE-----NTTFCHDRAETFGQRK 136 (239)
T ss_dssp EEEEECSSSCTTHHHHHHHCT-----------TCEEEEEESCHHHHHHHHHHHHHHTCS-----SEEEEESCHHHHTTCT
T ss_pred eEEeecCCCchHHHHHHHhCC-----------CccceeecchHHHHHHHHHHHHHhCCC-----CcEEEeehhhhccccc
Confidence 589999999988887766654 789999999997777777766666665 78888887776542
Q ss_pred -CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 -ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 -~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..++||+|++. .+..+...+.-+.+.++++|.+++..
T Consensus 137 ~~~~~~D~v~sR----Ava~l~~ll~~~~~~l~~~g~~i~~K 174 (239)
T d1xdza_ 137 DVRESYDIVTAR----AVARLSVLSELCLPLVKKNGLFVALK 174 (239)
T ss_dssp TTTTCEEEEEEE----CCSCHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cccccceEEEEh----hhhCHHHHHHHHhhhcccCCEEEEEC
Confidence 23679999885 35577888888999999999998864
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.57 E-value=5.6e-08 Score=61.88 Aligned_cols=94 Identities=19% Similarity=0.135 Sum_probs=65.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+|||.|||+|.+...+.+... ....++++|+++..+..+ .+...+..|..... ..
T Consensus 22 ~IlDp~~G~G~fl~~~~~~~~----------~~~~i~g~ei~~~~~~~~--------------~~~~~~~~~~~~~~-~~ 76 (223)
T d2ih2a1 22 RVLEPACAHGPFLRAFREAHG----------TAYRFVGVEIDPKALDLP--------------PWAEGILADFLLWE-PG 76 (223)
T ss_dssp EEEEETCTTCHHHHHHHHHHC----------SCSEEEEEESCTTTCCCC--------------TTEEEEESCGGGCC-CS
T ss_pred EEEECCCchHHHHHHHHHhcc----------ccceEEeeecCHHHHhhc--------------ccceeeeeehhccc-cc
Confidence 699999999999888877765 356899999987432211 14566667765543 34
Q ss_pred CCeeEEEEcccccccc----------------------------C-HHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVT----------------------------R-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~----------------------------~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..||+|+++....... + ...++.+..+.|+|||++.++-
T Consensus 77 ~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~ 144 (223)
T d2ih2a1 77 EAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVV 144 (223)
T ss_dssp SCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEE
Confidence 6799999875542110 0 1356788899999999987764
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.6e-07 Score=58.39 Aligned_cols=97 Identities=15% Similarity=0.189 Sum_probs=69.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
++|||+||++|.|+..+++... ....+.++|..+ .. .. +.+.++..|+....
T Consensus 24 ~~vlDLg~aPGgw~q~~~~~~~----------~~~~v~~vDl~~---------~~--~i-----~~~~~~~~d~~~~~~~ 77 (180)
T d1ej0a_ 24 MTVVDLGAAPGGWSQYVVTQIG----------GKGRIIACDLLP---------MD--PI-----VGVDFLQGDFRDELVM 77 (180)
T ss_dssp CEEEEESCTTCHHHHHHHHHHC----------TTCEEEEEESSC---------CC--CC-----TTEEEEESCTTSHHHH
T ss_pred CeEEEEeccCCcceEEEEeecc----------ccceEEEeeccc---------cc--cc-----CCceEeecccccchhh
Confidence 4789999999999999988776 357899999754 11 11 26888888876532
Q ss_pred ------CCCCCeeEEEEccccccccC-----------HHHHHHHHHHhccCCcEEEEEeccC
Q psy890 79 ------IESDSYSAYTIAFGIRNVTR-----------IDKALSEAYRVLKPGGRFLCLEFSH 123 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~~~~~-----------~~~~l~~~~~~L~p~G~l~~~~~~~ 123 (131)
....++|+|++-.+.....+ ....+.-+.+.|++||.+++--+..
T Consensus 78 ~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g 139 (180)
T d1ej0a_ 78 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG 139 (180)
T ss_dssp HHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred hhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecC
Confidence 23567999999766433221 2456777789999999998865554
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=2.2e-06 Score=56.95 Aligned_cols=74 Identities=7% Similarity=-0.038 Sum_probs=61.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC-
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE- 80 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~- 80 (131)
+|||+++|+|.-+..++.... ...+++++|+++.-+...++++...+.. ++.+...|...+...
T Consensus 97 ~vLD~cAapGgKt~~la~l~~----------~~~~i~a~d~~~~R~~~l~~~l~r~g~~-----~~~~~~~d~~~~~~~~ 161 (293)
T d2b9ea1 97 HVIDACAAPGNKTSHLAALLK----------NQGKIFAFDLDAKRLASMATLLARAGVS-----CCELAEEDFLAVSPSD 161 (293)
T ss_dssp EEEESSCTTCHHHHHHHHHHT----------TCSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCGGGSCTTC
T ss_pred eEEecccchhhHHHHHHHHhc----------CCceEeeecCCHHHHHHHHHHHHhcCcc-----ceeeeehhhhhhcccc
Confidence 699999999999999988775 3678999999999999999999988765 788888887765422
Q ss_pred --CCCeeEEEEc
Q psy890 81 --SDSYSAYTIA 90 (131)
Q Consensus 81 --~~~~D~i~~~ 90 (131)
.+.||.|++-
T Consensus 162 ~~~~~fD~VL~D 173 (293)
T d2b9ea1 162 PRYHEVHYILLD 173 (293)
T ss_dssp GGGTTEEEEEEC
T ss_pred cccceeeEEeec
Confidence 2579999874
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.4e-07 Score=61.22 Aligned_cols=71 Identities=11% Similarity=0.178 Sum_probs=57.2
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
.|||||+|+|.+|..+++. +.+++++++++.++...++.+......+ +++++..|+.+..++
T Consensus 24 ~VlEIGPG~G~LT~~Ll~~-------------~~~v~aiE~D~~l~~~L~~~~~~~~~~~----~~~~i~~D~l~~~~~- 85 (278)
T d1zq9a1 24 VVLEVGPGTGNMTVKLLEK-------------AKKVVACELDPRLVAELHKRVQGTPVAS----KLQVLVGDVLKTDLP- 85 (278)
T ss_dssp EEEEECCTTSTTHHHHHHH-------------SSEEEEEESCHHHHHHHHHHHTTSTTGG----GEEEEESCTTTSCCC-
T ss_pred EEEEECCCchHHHHHHHhc-------------CCcEEEEEEccchhHHHHHHHhhhcccc----chhhhHHHHhhhhhh-
Confidence 5899999999999999987 5689999999999999999887654332 899999998876543
Q ss_pred CCeeEEEEcc
Q psy890 82 DSYSAYTIAF 91 (131)
Q Consensus 82 ~~~D~i~~~~ 91 (131)
.++.|+.+.
T Consensus 86 -~~~~vV~NL 94 (278)
T d1zq9a1 86 -FFDTCVANL 94 (278)
T ss_dssp -CCSEEEEEC
T ss_pred -hhhhhhcch
Confidence 245566543
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=3.1e-07 Score=62.58 Aligned_cols=71 Identities=18% Similarity=0.162 Sum_probs=59.9
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+-||+|.++..+++. ..+|+++|.++.+++.|+++...++.. ++.++..+..+.-
T Consensus 215 ~vlDLycG~G~fsl~La~~-------------~~~V~gvE~~~~ai~~A~~na~~n~i~-----n~~~~~~~~~~~~~~~ 276 (358)
T d1uwva2 215 RVLDLFCGMGNFTLPLATQ-------------AASVVGVEGVPALVEKGQQNARLNGLQ-----NVTFYHENLEEDVTKQ 276 (358)
T ss_dssp EEEEESCTTTTTHHHHHTT-------------SSEEEEEESCHHHHHHHHHHHHHTTCC-----SEEEEECCTTSCCSSS
T ss_pred eEEEecccccccchhcccc-------------ccEEEeccCcHHHHHHHHHhHHhcccc-----cceeeecchhhhhhhh
Confidence 5899999999999999875 578999999999999999999888776 8999998876632
Q ss_pred -CCCCCeeEEEEc
Q psy890 79 -IESDSYSAYTIA 90 (131)
Q Consensus 79 -~~~~~~D~i~~~ 90 (131)
.....+|+|++.
T Consensus 277 ~~~~~~~d~vilD 289 (358)
T d1uwva2 277 PWAKNGFDKVLLD 289 (358)
T ss_dssp GGGTTCCSEEEEC
T ss_pred hhhhccCceEEeC
Confidence 224678999884
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=5.4e-07 Score=59.74 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=77.8
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-C
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-I 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-~ 79 (131)
.+|||+++++|.=+..++.... ..++++.|.++.-+...+++++..+.. ++.....+..... .
T Consensus 104 ~~vLD~CAaPGgKt~~la~l~~-----------~~~i~a~d~~~~R~~~l~~~~~r~g~~-----~~~~~~~~~~~~~~~ 167 (284)
T d1sqga2 104 EHILDLCAAPGGKTTHILEVAP-----------EAQVVAVDIDEQRLSRVYDNLKRLGMK-----ATVKQGDGRYPSQWC 167 (284)
T ss_dssp CEEEEESCTTCHHHHHHHHHCT-----------TCEEEEEESSTTTHHHHHHHHHHTTCC-----CEEEECCTTCTHHHH
T ss_pred ceeEeccCccccchhhhhhhhh-----------hhhhhhhhcchhhhhhHhhhhhccccc-----ceeeeccccccchhc
Confidence 3699999999999998887643 578999999999999999999887754 4544444433221 2
Q ss_pred CCCCeeEEEEccccccc------cC----------------HHHHHHHHHHhccCCcEEEEEeccCC
Q psy890 80 ESDSYSAYTIAFGIRNV------TR----------------IDKALSEAYRVLKPGGRFLCLEFSHV 124 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~------~~----------------~~~~l~~~~~~L~p~G~l~~~~~~~~ 124 (131)
....||.|++-..+... ++ -.++|.++.+.|+|||+++...++-.
T Consensus 168 ~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~ 234 (284)
T d1sqga2 168 GEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL 234 (284)
T ss_dssp TTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred ccccccEEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCc
Confidence 34679999984332211 11 14678888899999999887766643
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.47 E-value=1e-07 Score=61.48 Aligned_cols=100 Identities=12% Similarity=0.068 Sum_probs=62.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|||+|++.|..+..++..+.... ...+++++|++....... ... . .+++++.+|.....
T Consensus 83 ~ILEIGv~~GgS~~~~a~~l~~~~-------~~~kI~giDId~~~~~~~-----~~~-~----~~I~~i~gDs~~~~~~~ 145 (232)
T d2bm8a1 83 TIVELGVYNGGSLAWFRDLTKIMG-------IDCQVIGIDRDLSRCQIP-----ASD-M----ENITLHQGDCSDLTTFE 145 (232)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTT-------CCCEEEEEESCCTTCCCC-----GGG-C----TTEEEEECCSSCSGGGG
T ss_pred EEEEECCCCchHHHHHHHHHHhcC-------CCceEEecCcChhhhhhh-----hcc-c----cceeeeecccccHHHHH
Confidence 699999999987776665442111 367999999976322211 111 1 28999998865432
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+....+|+|+.-.. |........+ .+.+.|++||++++-|
T Consensus 146 ~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 146 HLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp GGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred HHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 33456788877544 4333222223 3568999999998755
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=1.5e-07 Score=61.49 Aligned_cols=57 Identities=9% Similarity=-0.053 Sum_probs=49.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 78 (131)
.|||||||+|.+|..+++. +.+++++|+++.+++..+++..... +++++..|+.+++
T Consensus 24 ~vlEIGpG~G~LT~~Ll~~-------------~~~v~aiEiD~~l~~~L~~~~~~~~-------~~~ii~~D~l~~~ 80 (252)
T d1qyra_ 24 AMVEIGPGLAALTEPVGER-------------LDQLTVIELDRDLAARLQTHPFLGP-------KLTIYQQDAMTFN 80 (252)
T ss_dssp CEEEECCTTTTTHHHHHTT-------------CSCEEEECCCHHHHHHHHTCTTTGG-------GEEEECSCGGGCC
T ss_pred EEEEECCCchHHHHHHHcc-------------CCceEEEEeccchhHHHHHHhhhcc-------chhHHhhhhhhhc
Confidence 5899999999999999886 5689999999999999987665444 8999999988765
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.38 E-value=1.2e-06 Score=61.01 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=77.3
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCC--CCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSE--HCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+|+|..||+|.+...+.+++.......... .....++|+|+++.....++.+..-.+... ....+...|.... .
T Consensus 165 ~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~---~~~~i~~~d~l~~-~ 240 (425)
T d2okca1 165 TVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT---DRSPIVCEDSLEK-E 240 (425)
T ss_dssp CEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS---SCCSEEECCTTTS-C
T ss_pred eeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc---ccceeecCchhhh-h
Confidence 689999999999998888775322111000 002359999999999999988876655432 1345566665442 2
Q ss_pred CCCCeeEEEEcccccc--cc--------------C-HHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRN--VT--------------R-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~--~~--------------~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....||+|+++-.... .. + -..++.++.+.|++||++.++-
T Consensus 241 ~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~ 298 (425)
T d2okca1 241 PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVL 298 (425)
T ss_dssp CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3467999999655421 11 1 1358999999999999877653
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.27 E-value=2.4e-06 Score=58.67 Aligned_cols=103 Identities=17% Similarity=0.082 Sum_probs=74.7
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC----------CCceeEEe
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----------NPRLRFLE 71 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 71 (131)
+|||..||+|..+...+...+ ..+|++.|+|+..++.++++++.++..... ...+....
T Consensus 48 ~vLD~~sasG~rsiRya~E~~-----------~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~ 116 (375)
T d2dula1 48 IVLDALSATGIRGIRFALETP-----------AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINH 116 (375)
T ss_dssp EEEESSCTTSHHHHHHHHHSS-----------CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEE
T ss_pred EEEEcCCCccHHHHHHHHhCC-----------CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeeh
Confidence 589999999999998877754 568999999999999999999876543210 01244455
Q ss_pred cccccCC-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 72 ANAEELP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 72 ~d~~~~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.|....- ...+.||+|..-- +..+..+|..+.+.++.||.+.++
T Consensus 117 ~Da~~~~~~~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vT 161 (375)
T d2dula1 117 DDANRLMAERHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVT 161 (375)
T ss_dssp SCHHHHHHHSTTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhhhhhHhhcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEE
Confidence 5544321 2345799997743 234567889999999999999875
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=98.11 E-value=4.9e-06 Score=59.41 Aligned_cols=119 Identities=8% Similarity=-0.133 Sum_probs=72.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCC-------CCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEH-------CAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA 74 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 74 (131)
+|+|..||+|.+...+.+++........... ....++|+|+++.++..++.++-..+..........+...+.
T Consensus 167 ~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~~~~i~~~~~~~~~~~ 246 (524)
T d2ar0a1 167 VVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRLGNT 246 (524)
T ss_dssp CEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEESCT
T ss_pred hhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcccccccccchhhhhhh
Confidence 6899999999998888877653221111000 113699999999999999877765443210000112222222
Q ss_pred ccCC-CCCCCeeEEEEccccccc--c-----------C-HHHHHHHHHHhccCCcEEEEEe
Q psy890 75 EELP-IESDSYSAYTIAFGIRNV--T-----------R-IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 75 ~~~~-~~~~~~D~i~~~~~l~~~--~-----------~-~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+ .....||+|+++-.+... . + -..++.++.+.|+|||++.++-
T Consensus 247 l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 247 LGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 1111 234579999996554211 1 1 2358999999999999977753
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=98.07 E-value=9.2e-06 Score=55.29 Aligned_cols=123 Identities=9% Similarity=-0.005 Sum_probs=79.4
Q ss_pred CceeeeecccchhhHHHhhhh----cCC-CCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCc--eeEEecc
Q psy890 1 MYILFYLVFPGDIAFRFLNYV----DKL-PPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPR--LRFLEAN 73 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~----~~~-~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~d 73 (131)
++|.|+||.+|..+..+...+ .+. ...+....+..++..-|...+-....-+.++...-.. .+ +..+.++
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~---~~~f~~gvpGS 129 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVD---GVCFINGVPGS 129 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCT---TCEEEEEEESC
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCC---CCeEEEecCCc
Confidence 368999999999886543321 100 0000111246889999987766666655554322111 12 2334556
Q ss_pred cccCCCCCCCeeEEEEccccccccC---------------------------------HHHHHHHHHHhccCCcEEEEEe
Q psy890 74 AEELPIESDSYSAYTIAFGIRNVTR---------------------------------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 74 ~~~~~~~~~~~D~i~~~~~l~~~~~---------------------------------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+-.--+|.++.|++++++.+||++. +..+|..=.+-|.|||+++++-
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~ 209 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEE
Confidence 5554588999999999999999741 2456777778899999999987
Q ss_pred ccCCCc
Q psy890 121 FSHVNN 126 (131)
Q Consensus 121 ~~~~~~ 126 (131)
++++..
T Consensus 210 ~gr~~~ 215 (359)
T d1m6ex_ 210 LGRRSE 215 (359)
T ss_dssp EECSSS
T ss_pred eccCCC
Confidence 776553
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.77 E-value=8.5e-06 Score=52.61 Aligned_cols=99 Identities=8% Similarity=-0.089 Sum_probs=57.1
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEELPI 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~ 79 (131)
++|+|+|||.|.|+..++.... ...+.++++--..-+.- .......+ +-+.+...+ +. ..
T Consensus 68 ~~vvDlG~~pGgws~~~a~~~~-----------v~~V~g~~iG~d~~e~P-~~~~~~~~-----ni~~~~~~~dv~--~l 128 (257)
T d2p41a1 68 GKVVDLGCGRGGWSYYCGGLKN-----------VREVKGLTKGGPGHEEP-IPMSTYGW-----NLVRLQSGVDVF--FI 128 (257)
T ss_dssp EEEEEETCTTSHHHHHHHTSTT-----------EEEEEEECCCSTTSCCC-CCCCSTTG-----GGEEEECSCCTT--TS
T ss_pred CeEEEecCCCChHHHHHHhhcC-----------CCceeEEEecCccccCC-cccccccc-----ccccchhhhhHH--hc
Confidence 3689999999999998887643 45778888743210000 00000000 012332222 21 23
Q ss_pred CCCCeeEEEEccccccccC-------HHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTR-------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~-------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+....|+|+|-.+-. .++ ..+.+.-+.+.|+|||-+.+-
T Consensus 129 ~~~~~D~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~FvvK 174 (257)
T d2p41a1 129 PPERCDTLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK 174 (257)
T ss_dssp CCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred CCCcCCEEEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEEE
Confidence 457899999976543 222 135567777999999987653
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.75 E-value=3.5e-05 Score=51.68 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=46.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
.|||+|+|.|.+|..+++... ..+++++|+++.+.+..++.+.. . +++++..|+..
T Consensus 46 ~VlEIGPG~G~LT~~Ll~~~~-----------~~~v~~iE~D~~~~~~L~~~~~~-~-------~~~ii~~D~l~ 101 (322)
T d1i4wa_ 46 KVLDLYPGVGIQSAIFYNKYC-----------PRQYSLLEKRSSLYKFLNAKFEG-S-------PLQILKRDPYD 101 (322)
T ss_dssp EEEEESCTTCHHHHHHHHHHC-----------CSEEEEECCCHHHHHHHHHHTTT-S-------SCEEECSCTTC
T ss_pred eEEEECCCCCHHHHHHHhcCC-----------CCEEEEEECCHHHHHHHHHhccC-C-------CcEEEeCchhh
Confidence 599999999999999998743 35899999999999998877643 2 78888888654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.24 E-value=0.00011 Score=44.64 Aligned_cols=95 Identities=15% Similarity=0.056 Sum_probs=63.0
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
+++=+|+|. |..+...+..+ +.+++.+|.+.+.++..+..+.. ++.+...+-..+...
T Consensus 34 ~V~ViGaGvaG~~A~~~A~~l------------GA~V~~~D~~~~~l~~l~~~~~~---------~~~~~~~~~~~l~~~ 92 (168)
T d1pjca1 34 KVVILGGGVVGTEAAKMAVGL------------GAQVQIFDINVERLSYLETLFGS---------RVELLYSNSAEIETA 92 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHHHGG---------GSEEEECCHHHHHHH
T ss_pred EEEEECCChHHHHHHHHHhhC------------CCEEEEEeCcHHHHHHHHHhhcc---------cceeehhhhhhHHHh
Confidence 567777774 34455555554 68999999999998888776654 445544443332211
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
-...|+||..-.+..-+.+.-+-+++.+.||||++++
T Consensus 93 ~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 93 VAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp HHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred hccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEE
Confidence 2357999997665544444444577889999999886
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.06 E-value=0.0008 Score=43.33 Aligned_cols=79 Identities=10% Similarity=-0.024 Sum_probs=55.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCC----CCceeEEecccccC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVP----NPRLRFLEANAEEL 77 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 77 (131)
+|||..+|.|..+..++.. +.+|+++|.++......+..+.......+. ..+++++..|..+.
T Consensus 91 ~VlD~TaGlG~Da~vlA~~-------------G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~ 157 (250)
T d2oyra1 91 DVVDATAGLGRDAFVLASV-------------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA 157 (250)
T ss_dssp CEEETTCTTCHHHHHHHHH-------------TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred EEEECCCcccHHHHHHHhC-------------CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence 6999999999999999876 578999999998777666554432211100 01689999996553
Q ss_pred -CCCCCCeeEEEEcccc
Q psy890 78 -PIESDSYSAYTIAFGI 93 (131)
Q Consensus 78 -~~~~~~~D~i~~~~~l 93 (131)
.-..++||+|+.--++
T Consensus 158 L~~~~~~~DvIYlDPMF 174 (250)
T d2oyra1 158 LTDITPRPQVVYLDPMF 174 (250)
T ss_dssp STTCSSCCSEEEECCCC
T ss_pred HhccCCCCCEEEECCCC
Confidence 2234679999986555
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=96.81 E-value=0.0042 Score=38.24 Aligned_cols=97 Identities=16% Similarity=0.069 Sum_probs=61.4
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||-+|||+ |..+..+++... ..+++++|.++.-++.+++.=. . ..+...-.++
T Consensus 28 tVlV~GaG~vGl~a~~~ak~~g-----------a~~Vi~~d~~~~rl~~a~~~Ga----------~-~~~~~~~~~~~~~ 85 (195)
T d1kola2 28 TVYVAGAGPVGLAAAASARLLG-----------AAVVIVGDLNPARLAHAKAQGF----------E-IADLSLDTPLHEQ 85 (195)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHTTC----------E-EEETTSSSCHHHH
T ss_pred EEEEECcCHHHHHHHHHHHhhc-----------ccceeeecccchhhHhhhhccc----------c-EEEeCCCcCHHHH
Confidence 577889987 556666666653 6689999999988888765421 1 1111110110
Q ss_pred --C-CCCCCeeEEEEccccc---------cccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 --P-IESDSYSAYTIAFGIR---------NVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 --~-~~~~~~D~i~~~~~l~---------~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. .....+|+++-.-+.. ........+..+.+.++|+|++.++-
T Consensus 86 i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G 140 (195)
T d1kola2 86 IAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 140 (195)
T ss_dssp HHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred HHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEee
Confidence 0 1234689998654321 11234578999999999999998764
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.00095 Score=40.61 Aligned_cols=95 Identities=21% Similarity=0.158 Sum_probs=56.8
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||-+|+| .|.....+++..+ ..+|+++|.+++-++.+++.=... -+.....+..+.
T Consensus 31 ~VlV~GaG~iG~~~~~~ak~~G-----------a~~Vi~~~~~~~~~~~a~~lGa~~--------vi~~~~~~~~~~~~~ 91 (182)
T d1vj0a2 31 TVVIQGAGPLGLFGVVIARSLG-----------AENVIVIAGSPNRLKLAEEIGADL--------TLNRRETSVEERRKA 91 (182)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------BSEEEEEESCHHHHHHHHHTTCSE--------EEETTTSCHHHHHHH
T ss_pred EEEEECCCccchhheecccccc-----------cccccccccccccccccccccceE--------EEeccccchHHHHHH
Confidence 46667775 3666777777653 358999999999888886531110 010011111111
Q ss_pred --C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 78 --P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 78 --~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. .....+|+|+-.-+- ...+....+.++|+|+++++-.
T Consensus 92 i~~~~~~~g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 92 IMDITHGRGADFILEATGD------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp HHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred HHHhhCCCCceEEeecCCc------hhHHHHHHHHhcCCCEEEEEee
Confidence 0 123469999864321 2346778899999999987643
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=96.72 E-value=0.0021 Score=43.43 Aligned_cols=51 Identities=14% Similarity=0.026 Sum_probs=37.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhh
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARD 56 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~ 56 (131)
.|+|+|+|+|.++..+++.+...+.. ....+++.+|.|+...+..++++..
T Consensus 82 ~ivE~GaG~G~La~dil~~l~~~~~~----~~~~~~~~vE~s~~L~~~Q~~~l~~ 132 (365)
T d1zkda1 82 RLIEIGPGRGTMMADALRALRVLPIL----YQSLSVHLVEINPVLRQKQQTLLAG 132 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHTTSHHH----HTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred eEEecCCcccHHHHhhhhhhcccccc----cccceEEEeccchhHHHHHHHHhcc
Confidence 58999999999999988876421100 0246799999999888877777654
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.68 E-value=0.0059 Score=36.83 Aligned_cols=93 Identities=13% Similarity=0.136 Sum_probs=57.9
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||=+|||. |..+..+++..+ ..+++++|.++.-++.+++. +. ..++...-.+.
T Consensus 30 ~VlI~GaG~vGl~~~q~ak~~G-----------a~~Vi~~d~~~~r~~~a~~l----Ga-------~~~i~~~~~~~~~~ 87 (174)
T d1jqba2 30 SVVVIGIGAVGLMGIAGAKLRG-----------AGRIIGVGSRPICVEAAKFY----GA-------TDILNYKNGHIEDQ 87 (174)
T ss_dssp CEEEECCSHHHHHHHHHHHTTT-----------CSCEEEECCCHHHHHHHHHH----TC-------SEEECGGGSCHHHH
T ss_pred EEEEEcCCcchhhhhhhhhccc-----------ccccccccchhhhHHHHHhh----Cc-------cccccccchhHHHH
Confidence 456678865 677777777653 45799999999887777642 11 11111111111
Q ss_pred --C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 78 --P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 78 --~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
. .....+|+|+-.-.- ...+.+..+.++|+|.++++-..
T Consensus 88 v~~~t~g~G~D~vid~~g~------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 88 VMKLTNGKGVDRVIMAGGG------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp HHHHTTTSCEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred HHHHhhccCcceEEEccCC------HHHHHHHHHHHhcCCEEEEEeec
Confidence 0 123459999775432 23467788999999999886543
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.66 E-value=0.016 Score=37.71 Aligned_cols=74 Identities=7% Similarity=0.105 Sum_probs=52.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI- 79 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~- 79 (131)
|+|||+-||-|-++.-+-+. +...+.++|+++.+.+..+.+.. -.....|+.++..
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a------------G~~~~~a~e~d~~a~~~~~~N~~-----------~~~~~~Di~~~~~~ 57 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA------------GFRIICANEYDKSIWKTYESNHS-----------AKLIKGDISKISSD 57 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH------------TCEEEEEEECCHHHHHHHHHHCC-----------SEEEESCTTTSCGG
T ss_pred CeEEEeCcCcCHHHHHHHHC------------CCEEEEEEeCCHHHHHHHHHHCC-----------CCCccCChhhCCHh
Confidence 78999999999987766543 23457799999988887777653 2345677776642
Q ss_pred CCCCeeEEEEcccccccc
Q psy890 80 ESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~ 97 (131)
.-...|+++....+..++
T Consensus 58 ~~~~~dll~~g~PCq~fS 75 (324)
T d1dcta_ 58 EFPKCDGIIGGPPCQSWS 75 (324)
T ss_dssp GSCCCSEEEECCCCTTTS
T ss_pred HcccccEEeecccccccc
Confidence 123589999877665553
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.59 E-value=0.0014 Score=42.92 Aligned_cols=43 Identities=5% Similarity=-0.099 Sum_probs=37.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||.-||+|..+.+..+. +.+++++|++++.++.+++++...
T Consensus 253 iVlDpF~GSGTT~~AA~~l-------------gR~~Ig~El~~~y~~~a~~Rl~~~ 295 (320)
T d1booa_ 253 LVVDIFGGSNTTGLVAERE-------------SRKWISFEMKPEYVAASAFRFLDN 295 (320)
T ss_dssp EEEETTCTTCHHHHHHHHT-------------TCEEEEEESCHHHHHHHHGGGSCS
T ss_pred EEEecCCCCcHHHHHHHHc-------------CCcEEEEeCCHHHHHHHHHHHHhc
Confidence 6899999999988776664 689999999999999999988653
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.52 E-value=0.012 Score=34.87 Aligned_cols=88 Identities=10% Similarity=-0.026 Sum_probs=53.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|+|.-||+| .....+++.+.+ .+.++++.|.+++.++.+++.- .+.....+.+..
T Consensus 1 MkI~iIG~G--~mG~~lA~~l~~---------~g~~V~~~d~~~~~~~~a~~~~-----------~~~~~~~~~~~~--- 55 (165)
T d2f1ka2 1 MKIGVVGLG--LIGASLAGDLRR---------RGHYLIGVSRQQSTCEKAVERQ-----------LVDEAGQDLSLL--- 55 (165)
T ss_dssp CEEEEECCS--HHHHHHHHHHHH---------TTCEEEEECSCHHHHHHHHHTT-----------SCSEEESCGGGG---
T ss_pred CEEEEEeec--HHHHHHHHHHHH---------CCCEEEEEECCchHHHHHHHhh-----------ccceeeeecccc---
Confidence 778888764 455555554431 2578999999998877765431 111111122221
Q ss_pred CCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 81 SDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 81 ~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
...|+|+..-. .....+.+.++...++++.++.
T Consensus 56 -~~~DiIilavp---~~~~~~vl~~l~~~l~~~~iv~ 88 (165)
T d2f1ka2 56 -QTAKIIFLCTP---IQLILPTLEKLIPHLSPTAIVT 88 (165)
T ss_dssp -TTCSEEEECSC---HHHHHHHHHHHGGGSCTTCEEE
T ss_pred -cccccccccCc---Hhhhhhhhhhhhhhccccccee
Confidence 35688887432 2245677888888888887664
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.37 E-value=0.027 Score=33.36 Aligned_cols=92 Identities=13% Similarity=0.114 Sum_probs=56.8
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
++|-+|+| -|..+..+++.. +.+++++|.+++-++.+++.-. ...+........
T Consensus 29 ~vlV~G~G~vG~~~~~~ak~~------------Ga~vi~v~~~~~r~~~a~~~ga----------~~~~~~~~~~~~~~~ 86 (170)
T d1e3ja2 29 TVLVIGAGPIGLVSVLAAKAY------------GAFVVCTARSPRRLEVAKNCGA----------DVTLVVDPAKEEESS 86 (170)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHTTC----------SEEEECCTTTSCHHH
T ss_pred EEEEEcccccchhhHhhHhhh------------cccccccchHHHHHHHHHHcCC----------cEEEeccccccccch
Confidence 45567775 455666666653 5689999999988888876421 111211111110
Q ss_pred -----C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 78 -----P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 78 -----~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. .....+|+|+-.-+ ....+.++.+.++|+|+++++-.
T Consensus 87 ~~~~~~~~~g~g~D~vid~~g------~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 87 IIERIRSAIGDLPNVTIDCSG------NEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp HHHHHHHHSSSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred hhhhhhcccccCCceeeecCC------ChHHHHHHHHHHhcCCceEEEec
Confidence 0 11356898876432 23567888899999999988643
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.33 E-value=0.033 Score=31.66 Aligned_cols=91 Identities=10% Similarity=0.210 Sum_probs=56.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
|+|+=+|+ |..+..+++.+.. .+.+++++|.+++.++.+.+.+ ...++.+|..+..
T Consensus 1 M~IvI~G~--G~~G~~la~~L~~---------~g~~v~vid~d~~~~~~~~~~~-----------~~~vi~Gd~~~~~~l 58 (132)
T d1lssa_ 1 MYIIIAGI--GRVGYTLAKSLSE---------KGHDIVLIDIDKDICKKASAEI-----------DALVINGDCTKIKTL 58 (132)
T ss_dssp CEEEEECC--SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHC-----------SSEEEESCTTSHHHH
T ss_pred CEEEEECC--CHHHHHHHHHHHH---------CCCCcceecCChhhhhhhhhhh-----------hhhhccCcccchhhh
Confidence 67777665 7788888887642 3578999999999888776543 3556777766532
Q ss_pred --CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEE
Q psy890 79 --IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRF 116 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l 116 (131)
..-+.+|.+++... -.+.........+.+.+.-.+
T Consensus 59 ~~~~i~~a~~vv~~t~---~d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 59 EDAGIEDADMYIAVTG---KEEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp HHTTTTTCSEEEECCS---CHHHHHHHHHHHHHTTCCCEE
T ss_pred hhcChhhhhhhcccCC---cHHHHHHHHHHHHHcCCceEE
Confidence 22356788877321 112222334455566666443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=96.22 E-value=0.026 Score=33.43 Aligned_cols=90 Identities=10% Similarity=-0.008 Sum_probs=52.5
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIESD 82 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 82 (131)
|+-+||| .....+++.+.+.. ...+++++|.+++.++.+++.- .+.....+.... ...
T Consensus 4 I~IIG~G--~mG~sla~~L~~~g-------~~~~I~~~D~~~~~~~~a~~~~-----------~~~~~~~~~~~~--~~~ 61 (171)
T d2g5ca2 4 VLIVGVG--FMGGSFAKSLRRSG-------FKGKIYGYDINPESISKAVDLG-----------IIDEGTTSIAKV--EDF 61 (171)
T ss_dssp EEEESCS--HHHHHHHHHHHHTT-------CCSEEEEECSCHHHHHHHHHTT-----------SCSEEESCGGGG--GGT
T ss_pred EEEEccC--HHHHHHHHHHHhcC-------CCeEEEEEECChHHHHHHHHhh-----------cchhhhhhhhhh--hcc
Confidence 7778775 45555554443111 2468999999999988887542 111111122111 123
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
..|+|+..-.. ......+.++.+.++++..+.
T Consensus 62 ~~dlIila~p~---~~~~~vl~~l~~~~~~~~ii~ 93 (171)
T d2g5ca2 62 SPDFVMLSSPV---RTFREIAKKLSYILSEDATVT 93 (171)
T ss_dssp CCSEEEECSCH---HHHHHHHHHHHHHSCTTCEEE
T ss_pred ccccccccCCc---hhhhhhhhhhhcccccccccc
Confidence 46888875432 245667788888888876664
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.21 E-value=0.0035 Score=40.16 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=37.4
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
.|||.-+|+|..+.+..+. +.+++++|+++..++.+++++...
T Consensus 210 iVLDpF~GSGTT~~Aa~~l-------------gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 210 TVLDFFAGSGVTARVAIQE-------------GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp EEEETTCTTCHHHHHHHHH-------------TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred EEEecCCCCcHHHHHHHHh-------------CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 5899999999987766665 679999999999999999998753
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.15 E-value=0.0027 Score=38.02 Aligned_cols=94 Identities=7% Similarity=0.006 Sum_probs=55.5
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-CC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-PI 79 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~ 79 (131)
+||-+|+| .|..+..+++.. +.+++++|.+++-++.+++. +. ...+...+..+. ..
T Consensus 30 ~vlI~GaG~vG~~a~q~ak~~------------G~~vi~~~~~~~k~~~a~~l----Ga------~~~i~~~~~~~~~~~ 87 (168)
T d1piwa2 30 KVGIVGLGGIGSMGTLISKAM------------GAETYVISRSSRKREDAMKM----GA------DHYIATLEEGDWGEK 87 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHH------------TCEEEEEESSSTTHHHHHHH----TC------SEEEEGGGTSCHHHH
T ss_pred EEEEECCCCcchhHHHHhhhc------------cccccccccchhHHHHhhcc----CC------cEEeeccchHHHHHh
Confidence 46678886 566677777764 56899999999888777653 21 111111111111 11
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
..+.+|.++..-.-..-. .+....+.++|+|+++++-.
T Consensus 88 ~~~~~d~vi~~~~~~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 88 YFDTFDLIVVCASSLTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp SCSCEEEEEECCSCSTTC----CTTTGGGGEEEEEEEEECCC
T ss_pred hhcccceEEEEecCCccc----hHHHHHHHhhccceEEEecc
Confidence 235689887643221111 13457889999999988643
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.95 E-value=0.023 Score=34.00 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=56.4
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||-+|+|. |..+..+++..+ ...++++|.++.-++.+++. + -..++..+-.+.
T Consensus 31 ~VlI~G~G~iG~~~~~~ak~~g-----------~~~v~~~~~~~~k~~~a~~~----G-------a~~~i~~~~~~~~~~ 88 (174)
T d1f8fa2 31 SFVTWGAGAVGLSALLAAKVCG-----------ASIIIAVDIVESRLELAKQL----G-------ATHVINSKTQDPVAA 88 (174)
T ss_dssp EEEEESCSHHHHHHHHHHHHHT-----------CSEEEEEESCHHHHHHHHHH----T-------CSEEEETTTSCHHHH
T ss_pred EEEEeCCCHHHhhhhhcccccc-----------cceeeeeccHHHHHHHHHHc----C-------CeEEEeCCCcCHHHH
Confidence 456677753 344666666654 56789999999888877653 2 112222221111
Q ss_pred --CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 --PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...++.+|+|+-.-+ ....+..+.+.++|+|++.++-
T Consensus 89 i~~~t~gg~D~vid~~G------~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 89 IKEITDGGVNFALESTG------SPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp HHHHTTSCEEEEEECSC------CHHHHHHHHHTEEEEEEEEECC
T ss_pred HHHHcCCCCcEEEEcCC------cHHHHHHHHhcccCceEEEEEe
Confidence 123457999986432 2345678899999999998753
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.70 E-value=0.039 Score=33.03 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=58.6
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C--
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-- 77 (131)
+||=+|||+ |..+..+++... ..+++++|.+++-++.+++. +. ...+.....+ .
T Consensus 31 ~VlV~G~G~iGl~a~~~ak~~G-----------a~~Vi~~d~~~~r~~~a~~~----Ga-------~~~i~~~~~~~~~~ 88 (174)
T d1e3ia2 31 TCAVFGLGCVGLSAIIGCKIAG-----------ASRIIAIDINGEKFPKAKAL----GA-------TDCLNPRELDKPVQ 88 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHHT----TC-------SEEECGGGCSSCHH
T ss_pred EEEEECCChHHHHHHHHHHHhC-----------CceeeeeccchHHHHHHHHh----CC-------CcccCCccchhhhh
Confidence 466689876 777888888764 56899999999877777653 21 1111111111 0
Q ss_pred ----CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCC-cEEEEEec
Q psy890 78 ----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPG-GRFLCLEF 121 (131)
Q Consensus 78 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~-G~l~~~~~ 121 (131)
......+|+++-.-+ ....+.+..+.++++ |+++++-.
T Consensus 89 ~~~~~~~~~G~d~vie~~G------~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 89 DVITELTAGGVDYSLDCAG------TAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp HHHHHHHTSCBSEEEESSC------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred hhHhhhhcCCCcEEEEecc------cchHHHHHHHHhhcCCeEEEecCC
Confidence 012356899976432 245678889999996 99987543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.65 E-value=0.028 Score=35.90 Aligned_cols=81 Identities=6% Similarity=-0.084 Sum_probs=53.4
Q ss_pred eEEEEeCCHHHHHHH---HHHhhhccCCCCCCCceeEEecccccCC-----CCCCCeeEEEEcccc--cc--cc-----C
Q psy890 36 HVTVADINRAMLDVG---EQRARDLFKVPVPNPRLRFLEANAEELP-----IESDSYSAYTIAFGI--RN--VT-----R 98 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~~~~~~D~i~~~~~l--~~--~~-----~ 98 (131)
++++.|++..+++.+ ++++...++.+ .+.+...|+.+.. .+....++|+++-.- .- -. .
T Consensus 116 ~i~G~D~d~~ai~~A~~~r~n~~~Agl~~----~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~ 191 (249)
T d1o9ga_ 116 ERFGKPSYLEAAQAARRLRERLTAEGGAL----PCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP 191 (249)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHTTSSC----CEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHcCCCc----eeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHH
Confidence 567889888888887 45777777775 7889888876542 124567899996432 11 11 1
Q ss_pred HHHHHHHHHHhccCCcEEEEEe
Q psy890 99 IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 99 ~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
...+...+.+.+.....++++.
T Consensus 192 ~~~~~~~l~~~~p~~s~~~it~ 213 (249)
T d1o9ga_ 192 VAGLLRSLASALPAHAVIAVTD 213 (249)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEE
T ss_pred HHHHHHHHHccCCCCcEEEEeC
Confidence 3455556777776666776654
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.55 E-value=0.033 Score=33.14 Aligned_cols=90 Identities=13% Similarity=0.046 Sum_probs=54.5
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCce-eEEeccccc-C
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRL-RFLEANAEE-L 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~~~-~ 77 (131)
+||-.|+ +.|..+..+++.. +.++++++.+++-.+.+++ .+.. .+ .....|+.+ .
T Consensus 31 ~VlV~Ga~G~vG~~aiq~a~~~------------G~~vi~~~~~~~~~~~~~~----~Ga~-----~vi~~~~~~~~~~i 89 (174)
T d1yb5a2 31 SVLVHGASGGVGLAACQIARAY------------GLKILGTAGTEEGQKIVLQ----NGAH-----EVFNHREVNYIDKI 89 (174)
T ss_dssp EEEEETCSSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHH----TTCS-----EEEETTSTTHHHHH
T ss_pred EEEEEecccccccccccccccc------------Ccccccccccccccccccc----cCcc-----cccccccccHHHHh
Confidence 4666665 4556677777664 5789999988876666653 2211 11 111111111 0
Q ss_pred --CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 --PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
......+|+|+...+ ...+.+..+.|+|+|+++.+
T Consensus 90 ~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~iv~~ 126 (174)
T d1yb5a2 90 KKYVGEKGIDIIIEMLA-------NVNLSKDLSLLSHGGRVIVV 126 (174)
T ss_dssp HHHHCTTCEEEEEESCH-------HHHHHHHHHHEEEEEEEEEC
T ss_pred hhhhccCCceEEeeccc-------HHHHHHHHhccCCCCEEEEE
Confidence 023467999987543 24578888999999999875
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.30 E-value=0.063 Score=31.82 Aligned_cols=92 Identities=16% Similarity=0.234 Sum_probs=56.4
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+||-+|+|+ |..+..+++... ...++++|.+++-++.+++.-. ..++..+-+...
T Consensus 35 ~vli~GaG~vG~~~~~~a~~~g-----------~~~vv~~~~~~~k~~~~~~~ga-----------~~~i~~~~~~~~~~ 92 (172)
T d1h2ba2 35 YVAIVGVGGLGHIAVQLLKVMT-----------PATVIALDVKEEKLKLAERLGA-----------DHVVDARRDPVKQV 92 (172)
T ss_dssp EEEEECCSHHHHHHHHHHHHHC-----------CCEEEEEESSHHHHHHHHHTTC-----------SEEEETTSCHHHHH
T ss_pred EEEEeCCChHHHHHHHHHHhhc-----------CcccccccchhHHHHHHhhccc-----------ceeecCcccHHHHH
Confidence 356677754 344566666654 5689999999987777764321 122222111110
Q ss_pred ---CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 ---IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.....+|+|+-.-+ -...+....+.++++|+++++-.
T Consensus 93 ~~~~~~~g~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 93 MELTRGRGVNVAMDFVG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp HHHTTTCCEEEEEESSC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred HHhhCCCCceEEEEecC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 22356999987543 23357888999999999988643
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=95.22 E-value=0.13 Score=33.44 Aligned_cols=72 Identities=10% Similarity=0.041 Sum_probs=49.5
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCC
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIE 80 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 80 (131)
|++||+-||-|-++..+-+. +...+.++|+++.+++..+.+..... ..|+.++...
T Consensus 12 lrv~~lFsG~Gg~~~gl~~a------------G~~~v~a~e~d~~a~~~~~~N~~~~~------------~~Di~~~~~~ 67 (327)
T d2c7pa1 12 LRFIDLFAGLGGFRLALESC------------GAECVYSNEWDKYAQEVYEMNFGEKP------------EGDITQVNEK 67 (327)
T ss_dssp CEEEEETCTTTHHHHHHHHT------------TCEEEEEECCCHHHHHHHHHHHSCCC------------BSCGGGSCGG
T ss_pred CeEEEECccccHHHHHHHHC------------CCeEEEEEeCCHHHHHHHHHHCCCCC------------cCchhcCchh
Confidence 68999999999888876543 23457789999999998888774321 2455554311
Q ss_pred -CCCeeEEEEccccccc
Q psy890 81 -SDSYSAYTIAFGIRNV 96 (131)
Q Consensus 81 -~~~~D~i~~~~~l~~~ 96 (131)
-..+|+++....+..+
T Consensus 68 ~~~~~Dll~ggpPCq~f 84 (327)
T d2c7pa1 68 TIPDHDILCAGFPCQAF 84 (327)
T ss_dssp GSCCCSEEEEECCCTTT
T ss_pred hcceeeeeecccccchh
Confidence 2358999886665544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.18 E-value=0.057 Score=31.85 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=56.4
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-- 77 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 77 (131)
+||=+|+ +.|..+..+++..+ ..+++++|.++.-++.+++. +. . ..+..+..+.
T Consensus 30 ~vlV~G~~G~vG~~~~~~~~~~g-----------~~~V~~~~~~~~~~~~~~~~----Ga------~-~~i~~~~~~~~~ 87 (170)
T d1jvba2 30 TLLVVGAGGGLGTMAVQIAKAVS-----------GATIIGVDVREEAVEAAKRA----GA------D-YVINASMQDPLA 87 (170)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHT-----------CCEEEEEESSHHHHHHHHHH----TC------S-EEEETTTSCHHH
T ss_pred EEEEEeccccceeeeeecccccc-----------cccccccccchhhHHHHHHc----CC------c-eeeccCCcCHHH
Confidence 3566675 34555666666653 57899999999877777653 21 1 1111111111
Q ss_pred ---C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 78 ---P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 78 ---~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
. ...+.+|+|+...+ -...+....+.++|+|+++++-.
T Consensus 88 ~~~~~~~~~~~d~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 88 EIRRITESKGVDAVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp HHHHHTTTSCEEEEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred HHHHHhhcccchhhhcccc------cchHHHhhhhhcccCCEEEEecc
Confidence 0 12456999987433 23456777899999999987643
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=94.98 E-value=0.0066 Score=37.04 Aligned_cols=104 Identities=16% Similarity=0.061 Sum_probs=58.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCC-CceeEEecccccCC-
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPN-PRLRFLEANAEELP- 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~- 78 (131)
+++=+|+|. |..+...+..+ +.+|+++|.+.+.+++.++.....-...... ....-...-..+++
T Consensus 31 ~VvViGaGvaG~~Aa~~A~~l------------GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~ 98 (183)
T d1l7da1 31 RVLVFGVGVAGLQAIATAKRL------------GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGE 98 (183)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEECSCSTTHHHHHHTTCEECCC--------------------
T ss_pred EEEEEcCcHHHHHHHHHHHHc------------CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCH
Confidence 567788875 34455555554 6899999999988888876654322100000 00000000011110
Q ss_pred -C----------CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEE
Q psy890 79 -I----------ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFL 117 (131)
Q Consensus 79 -~----------~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~ 117 (131)
+ .-...|+||..-.+..-+.+.-.-+++.+.||||++++
T Consensus 99 ~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIV 148 (183)
T d1l7da1 99 EFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVII 148 (183)
T ss_dssp ---CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEE
T ss_pred HHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEE
Confidence 0 01357999987766555544444577889999999886
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.13 Score=30.31 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=56.2
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||=+|+|+ |..+..+++..+ ..+++++|.++.-++.+++. +. . .++..+-...
T Consensus 29 ~VlI~G~G~iG~~~~~~a~~~G-----------~~~Vi~~d~~~~rl~~a~~~----Ga------~-~~~~~~~~~~~~~ 86 (171)
T d1pl8a2 29 KVLVCGAGPIGMVTLLVAKAMG-----------AAQVVVTDLSATRLSKAKEI----GA------D-LVLQISKESPQEI 86 (171)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEEESCHHHHHHHHHT----TC------S-EEEECSSCCHHHH
T ss_pred EEEEECCCccHHHHHHHHHHcC-----------CceEEeccCCHHHHHHHHHh----CC------c-ccccccccccccc
Confidence 456677754 344555566543 45899999999888887643 21 1 1111111110
Q ss_pred ----C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 78 ----P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 78 ----~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
. .....+|+|+-.-+ -...+....+.++++|++++.-..
T Consensus 87 ~~~~~~~~g~g~Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 87 ARKVEGQLGCKPEVTIECTG------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp HHHHHHHHTSCCSEEEECSC------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred cccccccCCCCceEEEeccC------CchhHHHHHHHhcCCCEEEEEecC
Confidence 0 11346899877443 234678889999999999886543
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.92 E-value=0.051 Score=35.51 Aligned_cols=76 Identities=13% Similarity=0.103 Sum_probs=48.6
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCC-CeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCA-PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP- 78 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~- 78 (131)
|+++|+-||.|-++.-+-+. + -. ..+.++|+++.+.+..+.+.. ....+..|+.++.
T Consensus 3 ~kv~~lF~G~Gg~~~gl~~a-G----------~~~~~~~a~E~~~~a~~~~~~n~~----------~~~~~~~di~~~~~ 61 (343)
T d1g55a_ 3 LRVLELYSGVGGMHHALRES-C----------IPAQVVAAIDVNTVANEVYKYNFP----------HTQLLAKTIEGITL 61 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHH-T----------CSEEEEEEECCCHHHHHHHHHHCT----------TSCEECSCGGGCCH
T ss_pred CEEEEcCcCccHHHHHHHHc-C----------CCCeEEEEEECCHHHHHHHHHHCC----------CCCcccCchhhCCH
Confidence 57999999999887665443 1 11 247799999988888776653 3455666776654
Q ss_pred --CCCCCeeEEEEcccccccc
Q psy890 79 --IESDSYSAYTIAFGIRNVT 97 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~~~~ 97 (131)
++...+|+++....+..++
T Consensus 62 ~~~~~~~~Dll~ggpPCq~fS 82 (343)
T d1g55a_ 62 EEFDRLSFDMILMSPPCQPFT 82 (343)
T ss_dssp HHHHHHCCSEEEECCC-----
T ss_pred hHcCCCCccEEEeeccccccc
Confidence 2223589998876665553
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.25 Score=31.15 Aligned_cols=78 Identities=8% Similarity=-0.085 Sum_probs=52.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+++| +...+++.+-+ .+.+|+.++.+++.++.+.+.+...+... ++.++..|+.+..
T Consensus 13 ~lITGas~G-IG~aiA~~la~---------~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~----~~~~~~~Dls~~~~v~~ 78 (257)
T d1xg5a_ 13 ALVTGASGG-IGAAVARALVQ---------QGLKVVGCARTVGNIEELAAECKSAGYPG----TLIPYRCDLSNEEDILS 78 (257)
T ss_dssp EEEESTTSH-HHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTTCSS----EEEEEECCTTCHHHHHH
T ss_pred EEEeCCCCH-HHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcCCCc----eEEEEEccCCCHHHHHH
Confidence 455565544 55555555431 37899999999999998888877655332 6788888877632
Q ss_pred ------CCCCCeeEEEEccccc
Q psy890 79 ------IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~ 94 (131)
-.-+..|+++.+.+..
T Consensus 79 ~v~~~~~~~g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 79 MFSAIRSQHSGVDICINNAGLA 100 (257)
T ss_dssp HHHHHHHHHCCCSEEEECCCCC
T ss_pred HHHHHHHhcCCCCEEEeccccc
Confidence 0125689998876543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.04 E-value=0.091 Score=29.55 Aligned_cols=87 Identities=8% Similarity=0.029 Sum_probs=54.9
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+. +..+..+|.+++..+..+.. .+.++.+|..+.. ..-+
T Consensus 5 I~G~g~~g~~l~~~L~-----------~~~i~vi~~d~~~~~~~~~~------------~~~~i~Gd~~~~~~L~~a~i~ 61 (129)
T d2fy8a1 5 ICGWSESTLECLRELR-----------GSEVFVLAEDENVRKKVLRS------------GANFVHGDPTRVSDLEKANVR 61 (129)
T ss_dssp EESCCHHHHHHHHTSC-----------GGGEEEEESCTTHHHHHHHT------------TCEEEESCTTSHHHHHHTTCT
T ss_pred EECCCHHHHHHHHHHc-----------CCCCEEEEcchHHHHHHHhc------------CccccccccCCHHHHHHhhhh
Confidence 3678889999999875 45688999999877655321 4677778866532 2234
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++.+++... -......+....+.+.|...++..
T Consensus 62 ~A~~vi~~~~---~d~~n~~~~~~~r~~~~~~~iia~ 95 (129)
T d2fy8a1 62 GARAVIVNLE---SDSETIHCILGIRKIDESVRIIAE 95 (129)
T ss_dssp TCSEEEECCS---SHHHHHHHHHHHHHHCSSSCEEEE
T ss_pred cCcEEEEecc---chhhhHHHHHHHHHHCCCceEEEE
Confidence 5777776321 112223344556677888776554
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=93.82 E-value=0.068 Score=36.32 Aligned_cols=47 Identities=11% Similarity=-0.013 Sum_probs=38.5
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhc
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDL 57 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~ 57 (131)
+++|+|+..|..+..++..... ...+++++|+++...+..++++...
T Consensus 215 vfIDVGAniG~~s~~f~~~~~~---------~~~kV~aFEP~p~n~~~LkkNi~~n 261 (395)
T d2py6a1 215 KMVDCGASIGESLAGLIGVTKG---------KFERVWMIEPDRINLQTLQNVLRRY 261 (395)
T ss_dssp EEEEETCTTSHHHHHHHHHHTS---------CCSEEEEECCCHHHHHHHHHHHHHT
T ss_pred EEEECCcCCCHHHHHHHHhcCC---------CCCEEEEEeCCHHHHHHHHHHHHhc
Confidence 5899999999998888776541 2468999999999999998887654
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.78 E-value=0.15 Score=32.47 Aligned_cols=81 Identities=16% Similarity=0.169 Sum_probs=57.9
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----------CCCCCeeEEEEcccccccc------
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----------IESDSYSAYTIAFGIRNVT------ 97 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~~D~i~~~~~l~~~~------ 97 (131)
+.+|+..+.+++-.+.+.+.++..+ .++.++..|+.+.. -..+.+|+++.+.++....
T Consensus 28 g~~Vi~~~r~~~~~~~~~~~l~~~~------~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~ 101 (275)
T d1wmaa1 28 SGDVVLTARDVTRGQAAVQQLQAEG------LSPRFHQLDIDDLQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPF 101 (275)
T ss_dssp SSEEEEEESSHHHHHHHHHHHHHTT------CCCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCH
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEEecCCHHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCC
Confidence 5789999999999988888877654 27888889987642 0125799999988764321
Q ss_pred --C-----------HHHHHHHHHHhccCCcEEEEEe
Q psy890 98 --R-----------IDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 98 --~-----------~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+ .....+.+.+.|+++|+++.+.
T Consensus 102 ~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 102 HIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 1 1234566678888889887654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.65 E-value=0.11 Score=30.46 Aligned_cols=89 Identities=17% Similarity=0.217 Sum_probs=50.2
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC---
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--- 77 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--- 77 (131)
+||=+|+| -|..+..+++.. +.+++++|.+++-++.+++. + -...+...-.+.
T Consensus 30 ~VlV~GaG~vG~~~~~~ak~~------------G~~Vi~~~~~~~~~~~a~~~----G-------a~~~i~~~~~~~~~~ 86 (166)
T d1llua2 30 WVAISGIGGLGHVAVQYARAM------------GLHVAAIDIDDAKLELARKL----G-------ASLTVNARQEDPVEA 86 (166)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESCHHHHHHHHHT----T-------CSEEEETTTSCHHHH
T ss_pred EEEEeeccccHHHHHHHHHHc------------CCccceecchhhHHHhhhcc----C-------ccccccccchhHHHH
Confidence 34556664 344455556553 57899999999888777643 2 111121111111
Q ss_pred --CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 --PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 --~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
....+.++.|++... ...+.+..+.|+|+|+++++-
T Consensus 87 ~~~~~~g~~~~i~~~~~-------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 87 IQRDIGGAHGVLVTAVS-------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp HHHHHSSEEEEEECCSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred HHHhhcCCccccccccc-------chHHHHHHHHhcCCcEEEEEE
Confidence 011233444443322 346788889999999998753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.31 E-value=0.065 Score=32.19 Aligned_cols=92 Identities=16% Similarity=0.149 Sum_probs=54.1
Q ss_pred eeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 3 ILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 3 iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
||=-|+ |-|..+..+++.. +.+++++.-+++-.+.+++.=.. .+.-+..+..+ . .
T Consensus 35 VLI~gaaGGVG~~aiQlak~~------------Ga~Viat~~s~~k~~~~~~lGa~---------~vi~~~~~~~~~~~~ 93 (176)
T d1xa0a2 35 VLVTGATGGVGSLAVSMLAKR------------GYTVEASTGKAAEHDYLRVLGAK---------EVLAREDVMAERIRP 93 (176)
T ss_dssp EEESSTTSHHHHHHHHHHHHT------------TCCEEEEESCTTCHHHHHHTTCS---------EEEECC---------
T ss_pred EEEEeccchHHHHHHHHHHHc------------CCceEEecCchHHHHHHHhcccc---------eeeecchhHHHHHHH
Confidence 444454 4556677777774 57889998888777776643211 11111111111 1 1
Q ss_pred CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEecc
Q psy890 79 IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFS 122 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~ 122 (131)
...+.+|+|+-.-+- ..+.+..+.|+|+|+++.+-..
T Consensus 94 ~~~~gvD~vid~vgg-------~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 94 LDKQRWAAAVDPVGG-------RTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp CCSCCEEEEEECSTT-------TTHHHHHHTEEEEEEEEECSCC
T ss_pred hhccCcCEEEEcCCc-------hhHHHHHHHhCCCceEEEeecc
Confidence 235679999875432 2467788999999999876443
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.22 E-value=0.42 Score=28.29 Aligned_cols=94 Identities=6% Similarity=0.009 Sum_probs=52.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+|+=+|+|. |..+..+++..+ ..+++++|.+++-++.+++.=.... +-..+.....
T Consensus 32 tVlI~G~GgvGl~ai~~ak~~G-----------~~~Vi~vd~~~~kl~~Ak~~GA~~~----------in~~~~~~~~~~ 90 (176)
T d1d1ta2 32 TCVVFGLGGVGLSVIMGCKSAG-----------ASRIIGIDLNKDKFEKAMAVGATEC----------ISPKDSTKPISE 90 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT-----------CSEEEEECSCGGGHHHHHHHTCSEE----------ECGGGCSSCHHH
T ss_pred EEEEECCCchhHHHHHHHHHcC-----------CceEEEecCcHHHHHHHHhcCCcEE----------ECccccchHHHH
Confidence 466678754 444666666643 5789999999999998876533211 1111111100
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEec
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEF 121 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~ 121 (131)
.....+|.++-.-. ........+....+++|.++++-.
T Consensus 91 ~~~~~~g~G~d~vi~~~g-----~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 91 VLSEMTGNNVGYTFEVIG-----HLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp HHHHHHTSCCCEEEECSC-----CHHHHHHHHTTSCTTTCEEEECSC
T ss_pred HHHHhccccceEEEEeCC-----chHHHHHHHHHhhcCCeEEEEEEc
Confidence 12346888876432 223333334444466699887543
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.21 E-value=0.28 Score=28.87 Aligned_cols=91 Identities=12% Similarity=0.083 Sum_probs=54.3
Q ss_pred eeeeecc--cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C-C
Q psy890 3 ILFYLVF--PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-P 78 (131)
Q Consensus 3 iLdig~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-~ 78 (131)
||=.|++ .|.....+++.. +.++++++.+++-.+.+++. +... -+.....|+.+ + .
T Consensus 32 Vlv~ga~g~vG~~~iqlak~~------------Ga~Vi~~~~s~~k~~~~~~l----Ga~~----vi~~~~~d~~~~v~~ 91 (179)
T d1qora2 32 FLFHAAAGGVGLIACQWAKAL------------GAKLIGTVGTAQKAQSALKA----GAWQ----VINYREEDLVERLKE 91 (179)
T ss_dssp EEESSTTBHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHHH----TCSE----EEETTTSCHHHHHHH
T ss_pred EEEEccccccchHHHHHHHHh------------CCeEeecccchHHHHHHHhc----CCeE----EEECCCCCHHHHHHH
Confidence 4444443 567777777774 57999999999888887643 2110 01111111111 0 0
Q ss_pred -CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 79 -IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 79 -~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
-....+|+|+....- ..+......++++|++++.-
T Consensus 92 ~t~g~g~d~v~d~~g~-------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 92 ITGGKKVRVVYDSVGR-------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp HTTTCCEEEEEECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred HhCCCCeEEEEeCccH-------HHHHHHHHHHhcCCeeeecc
Confidence 134579998775432 23567888999999987643
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.12 E-value=0.2 Score=29.63 Aligned_cols=87 Identities=15% Similarity=0.194 Sum_probs=52.5
Q ss_pred eeeee--cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 3 ILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 3 iLdig--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
||=.| .|.|..+..+++.. +.++.++.-+++-.+.+++ .+. . ..+...-.++.
T Consensus 29 VlI~ga~g~vG~~~iqla~~~------------g~~vi~~~~~~~~~~~l~~----~Ga------~-~vi~~~~~~~~~~ 85 (183)
T d1pqwa_ 29 VLIHSATGGVGMAAVSIAKMI------------GARIYTTAGSDAKREMLSR----LGV------E-YVGDSRSVDFADE 85 (183)
T ss_dssp EEETTTTSHHHHHHHHHHHHH------------TCEEEEEESSHHHHHHHHT----TCC------S-EEEETTCSTHHHH
T ss_pred EEEECCCCCcccccchhhccc------------cccceeeeccccccccccc----ccc------c-ccccCCccCHHHH
Confidence 44444 35567777777775 4678888877766666553 221 1 11111111110
Q ss_pred ----CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 79 ----IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ----~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.....+|+|+..-+ ...+.++.+.|+++|+++.+
T Consensus 86 v~~~t~~~g~d~v~d~~g-------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 86 ILELTDGYGVDVVLNSLA-------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp HHHHTTTCCEEEEEECCC-------THHHHHHHHTEEEEEEEEEC
T ss_pred HHHHhCCCCEEEEEeccc-------chHHHHHHHHhcCCCEEEEE
Confidence 23467999987544 23567788999999999875
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.78 E-value=0.094 Score=31.53 Aligned_cols=89 Identities=8% Similarity=-0.060 Sum_probs=52.6
Q ss_pred eeeee--cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc---ccc-
Q psy890 3 ILFYL--VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN---AEE- 76 (131)
Q Consensus 3 iLdig--~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~- 76 (131)
||-.| .|.|.....+++..+ ...++++..+++......+.... ...+... +.+
T Consensus 34 VLI~gaaGgVG~~aiQlak~~G-----------a~~vi~~~~~~e~~~~l~~~~ga----------d~vi~~~~~~~~~~ 92 (187)
T d1vj1a2 34 MVVSGAAGACGSLAGQIGHLLG-----------CSRVVGICGTQEKCLFLTSELGF----------DAAVNYKTGNVAEQ 92 (187)
T ss_dssp EEESSTTSTTGGGHHHHHHHTT-----------CSEEEEEESSHHHHHHHHHHSCC----------SEEEETTSSCHHHH
T ss_pred EEEECCCchhhHHHHHHHHHcC-----------CcceecccchHHHHhhhhhcccc----------eEEeeccchhHHHH
Confidence 44444 467788888888764 45677777776555544333211 1111111 111
Q ss_pred C-CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 77 L-PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 77 ~-~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. ....+.+|+|+-.-+ ...+.+..+.|+++|+++.+
T Consensus 93 ~~~~~~~GvDvv~D~vG-------g~~~~~~~~~l~~~G~iv~~ 129 (187)
T d1vj1a2 93 LREACPGGVDVYFDNVG-------GDISNTVISQMNENSHIILC 129 (187)
T ss_dssp HHHHCTTCEEEEEESSC-------HHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHhccCceEEEecCC-------chhHHHHhhhccccccEEEe
Confidence 0 012356999986543 34578889999999999864
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=92.22 E-value=0.27 Score=28.25 Aligned_cols=93 Identities=6% Similarity=-0.090 Sum_probs=54.9
Q ss_pred ecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----CCCC
Q psy890 7 LVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----IESD 82 (131)
Q Consensus 7 g~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----~~~~ 82 (131)
=||.|..+..+++.+.. .+..++.+|.+++......+..... .+.++.+|..+.. ..-+
T Consensus 8 I~G~g~~g~~l~~~L~~---------~~~~v~vId~d~~~~~~~~~~~~~~--------~~~vi~Gd~~d~~~L~~a~i~ 70 (153)
T d1id1a_ 8 VCGHSILAINTILQLNQ---------RGQNVTVISNLPEDDIKQLEQRLGD--------NADVIPGDSNDSSVLKKAGID 70 (153)
T ss_dssp EECCSHHHHHHHHHHHH---------TTCCEEEEECCCHHHHHHHHHHHCT--------TCEEEESCTTSHHHHHHHTTT
T ss_pred EECCCHHHHHHHHHHHH---------cCCCEEEEeccchhHHHHHHHhhcC--------CcEEEEccCcchHHHHHhccc
Confidence 36678888888888752 2567999999886544433333221 5778888866532 1234
Q ss_pred CeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 83 SYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 83 ~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..|.+++... -......+....+.+.|...++..
T Consensus 71 ~a~~vi~~~~---~d~~n~~~~~~~r~~~~~~~iia~ 104 (153)
T d1id1a_ 71 RCRAILALSD---NDADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp TCSEEEECSS---CHHHHHHHHHHHHHHTSSSCEEEE
T ss_pred cCCEEEEccc---cHHHHHHHHHHHHHhCCCCceEEE
Confidence 5788876432 111222333445556777766543
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=92.22 E-value=0.33 Score=27.09 Aligned_cols=87 Identities=14% Similarity=0.054 Sum_probs=50.8
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC----CCCC
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI----ESDS 83 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~ 83 (131)
||.|.++..+++.+.. .+.+++++|.+++.++.++.. ....+.+|..+... .-..
T Consensus 6 iG~G~~G~~la~~L~~---------~g~~vvvid~d~~~~~~~~~~------------~~~~~~gd~~~~~~l~~a~i~~ 64 (134)
T d2hmva1 6 IGLGRFGGSIVKELHR---------MGHEVLAVDINEEKVNAYASY------------ATHAVIANATEENELLSLGIRN 64 (134)
T ss_dssp ECCSHHHHHHHHHHHH---------TTCCCEEEESCHHHHHHTTTT------------CSEEEECCTTCTTHHHHHTGGG
T ss_pred ECCCHHHHHHHHHHHH---------CCCeEEEecCcHHHHHHHHHh------------CCcceeeecccchhhhccCCcc
Confidence 5778899988888752 367899999999887776421 23345567655431 1235
Q ss_pred eeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 84 YSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 84 ~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.|.+++...-. +....+....+.+.+...++.
T Consensus 65 a~~vi~~~~~~---~~~~~~~~~~~~~~~~~~iia 96 (134)
T d2hmva1 65 FEYVIVAIGAN---IQASTLTTLLLKELDIPNIWV 96 (134)
T ss_dssp CSEEEECCCSC---HHHHHHHHHHHHHTTCSEEEE
T ss_pred ccEEEEEcCch---HHhHHHHHHHHHHcCCCcEEe
Confidence 67776643211 122233344444556666654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=92.12 E-value=0.41 Score=28.33 Aligned_cols=88 Identities=16% Similarity=0.084 Sum_probs=53.2
Q ss_pred eeeeecc--cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc--cC-
Q psy890 3 ILFYLVF--PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE--EL- 77 (131)
Q Consensus 3 iLdig~G--~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~--~~- 77 (131)
||-.|++ -|.....+++.. +.+++++.-+++-.+.+++. +. ...+...+.. +.
T Consensus 33 VlV~ga~ggvG~~aiqlak~~------------Ga~vi~~~~~~~~~~~~~~~----Ga------~~vi~~~~~~~~~~~ 90 (182)
T d1v3va2 33 VLVSAAAGAVGSVVGQIAKLK------------GCKVVGAAGSDEKIAYLKQI----GF------DAAFNYKTVNSLEEA 90 (182)
T ss_dssp EEESSTTSHHHHHHHHHHHHT------------TCEEEEEESSHHHHHHHHHT----TC------SEEEETTSCSCHHHH
T ss_pred EEEEeCCCchhHHHHHHHHcc------------CCEEEEeCCCHHHHHHHHhh----hh------hhhcccccccHHHHH
Confidence 4444543 455666677764 57999999888766665543 21 1112112211 10
Q ss_pred -C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 -P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 -~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
. .....+|+|+-.-+ ...+.+..+.|+|+|.++.+
T Consensus 91 ~~~~~~~Gvd~v~D~vG-------~~~~~~~~~~l~~~G~~v~~ 127 (182)
T d1v3va2 91 LKKASPDGYDCYFDNVG-------GEFLNTVLSQMKDFGKIAIC 127 (182)
T ss_dssp HHHHCTTCEEEEEESSC-------HHHHHHHGGGEEEEEEEEEC
T ss_pred HHHhhcCCCceeEEecC-------chhhhhhhhhccCCCeEEee
Confidence 0 23456999977532 34678899999999999875
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.04 E-value=0.4 Score=27.72 Aligned_cols=90 Identities=18% Similarity=0.264 Sum_probs=49.3
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc--ccc-C
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN--AEE-L 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~-~ 77 (131)
+||=.|+|+ |.....+++.. +.+++++|.+++-++.+++. +. ...+...+ ... .
T Consensus 30 ~vlv~G~G~iG~~a~~~a~~~------------g~~v~~~~~~~~r~~~~k~~----Ga------~~~~~~~~~~~~~~~ 87 (168)
T d1rjwa2 30 WVAIYGIGGLGHVAVQYAKAM------------GLNVVAVDIGDEKLELAKEL----GA------DLVVNPLKEDAAKFM 87 (168)
T ss_dssp EEEEECCSTTHHHHHHHHHHT------------TCEEEEECSCHHHHHHHHHT----TC------SEEECTTTSCHHHHH
T ss_pred EEEEeecccchhhhhHHHhcC------------CCeEeccCCCHHHhhhhhhc----Cc------ceecccccchhhhhc
Confidence 355566654 33344444442 56899999999888777652 21 11111111 110 0
Q ss_pred C-CCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 78 P-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 78 ~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
. ...+.+|+|++.. -...+....+.++|+|.++++-
T Consensus 88 ~~~~~~~~~~v~~~~-------~~~~~~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 88 KEKVGGVHAAVVTAV-------SKPAFQSAYNSIRRGGACVLVG 124 (168)
T ss_dssp HHHHSSEEEEEESSC-------CHHHHHHHHHHEEEEEEEEECC
T ss_pred ccccCCCceEEeecC-------CHHHHHHHHHHhccCCceEecc
Confidence 0 1223344444322 1356788899999999998854
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=91.87 E-value=0.85 Score=28.47 Aligned_cols=75 Identities=12% Similarity=0.028 Sum_probs=51.9
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----- 78 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 78 (131)
|=.|+ ++.+...+++.+-+ .+.+|..+|.+++.++.+.+.++..+ .++.++..|+.+..
T Consensus 14 lITGa-s~GIG~a~a~~la~---------~Ga~V~~~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvt~~~~v~~~ 77 (251)
T d2c07a1 14 LVTGA-GRGIGREIAKMLAK---------SVSHVICISRTQKSCDSVVDEIKSFG------YESSGYAGDVSKKEEISEV 77 (251)
T ss_dssp EEEST-TSHHHHHHHHHHTT---------TSSEEEEEESSHHHHHHHHHHHHTTT------CCEEEEECCTTCHHHHHHH
T ss_pred EEeCC-CCHHHHHHHHHHHH---------cCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEccCCCHHHHHHH
Confidence 33344 44577777776531 36799999999999988888877654 26888889987642
Q ss_pred -----CCCCCeeEEEEccccc
Q psy890 79 -----IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~ 94 (131)
-.-+..|+++.+....
T Consensus 78 ~~~~~~~~g~iDilvnnag~~ 98 (251)
T d2c07a1 78 INKILTEHKNVDILVNNAGIT 98 (251)
T ss_dssp HHHHHHHCSCCCEEEECCCCC
T ss_pred HHHHHHhcCCceeeeeccccc
Confidence 1135789999876653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.56 E-value=0.3 Score=28.52 Aligned_cols=90 Identities=12% Similarity=0.127 Sum_probs=52.2
Q ss_pred ceeeeecc-cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccCCC
Q psy890 2 YILFYLVF-PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEELPI 79 (131)
Q Consensus 2 ~iLdig~G-~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~ 79 (131)
+||=+|+| -|..+..+++.. +.+++++|.+++-.+.+++. + ...++... ......
T Consensus 33 ~VlI~GaG~vG~~a~qlak~~------------Ga~~i~~~~~~~~~~~a~~l----G-------ad~~i~~~~~~~~~~ 89 (168)
T d1uufa2 33 KVGVVGIGGLGHMGIKLAHAM------------GAHVVAFTTSEAKREAAKAL----G-------ADEVVNSRNADEMAA 89 (168)
T ss_dssp EEEEECCSHHHHHHHHHHHHT------------TCEEEEEESSGGGHHHHHHH----T-------CSEEEETTCHHHHHT
T ss_pred EEEEeccchHHHHHHHHhhcc------------cccchhhccchhHHHHHhcc----C-------CcEEEECchhhHHHH
Confidence 35556764 356666667664 46778899888766665532 2 11122111 111112
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+.+|.++-.-.-. ..+....+.++++|+++++-
T Consensus 90 ~~~~~D~vid~~g~~------~~~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 90 HLKSFDFILNTVAAP------HNLDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp TTTCEEEEEECCSSC------CCHHHHHTTEEEEEEEEECC
T ss_pred hcCCCceeeeeeecc------hhHHHHHHHHhcCCEEEEec
Confidence 235799988754311 12566778999999998753
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=91.34 E-value=0.77 Score=26.97 Aligned_cols=93 Identities=10% Similarity=-0.025 Sum_probs=53.1
Q ss_pred ceeeeeccc-chhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-C--
Q psy890 2 YILFYLVFP-GDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-L-- 77 (131)
Q Consensus 2 ~iLdig~G~-G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~-- 77 (131)
+||=+|||. |..+..+++... ..+++++|.+++-++.+++. + -..++...-.+ .
T Consensus 30 ~VlV~GaGgvGl~a~~~ak~~G-----------~~~Vi~~d~~~~kl~~a~~l----G-------a~~~i~~~~~d~~~~ 87 (174)
T d1p0fa2 30 TCAVFGLGGVGFSAIVGCKAAG-----------ASRIIGVGTHKDKFPKAIEL----G-------ATECLNPKDYDKPIY 87 (174)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEECSCGGGHHHHHHT----T-------CSEEECGGGCSSCHH
T ss_pred EEEEECCCchhHHHHHHHHHcC-----------CceeeccCChHHHHHHHHHc----C-------CcEEEcCCCchhHHH
Confidence 466678864 344566666654 57899999999888888653 2 11122111111 0
Q ss_pred ----CCCCCCeeEEEEccccccccCHHHHHHHHHHhcc-CCcEEEEEecc
Q psy890 78 ----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLK-PGGRFLCLEFS 122 (131)
Q Consensus 78 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~-p~G~l~~~~~~ 122 (131)
......+|+++-.-. . ...+.+....++ ++|.++++-..
T Consensus 88 ~~~~~~~~~G~d~vid~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~~ 131 (174)
T d1p0fa2 88 EVICEKTNGGVDYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGLA 131 (174)
T ss_dssp HHHHHHTTSCBSEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCCC
T ss_pred HHHHHhcCCCCcEEEEcCC-----C-chHHHHHHHHHHHhcCceEEEEEe
Confidence 012346888876432 2 234455555554 56998876543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=90.98 E-value=0.54 Score=27.92 Aligned_cols=82 Identities=17% Similarity=0.183 Sum_probs=50.9
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC--CCCCCCeeE
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL--PIESDSYSA 86 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~ 86 (131)
|-|..+..+++.. +.+++++.-+++-.+.+++.=. ...+.-+-.+. .+....+|.
T Consensus 43 GVG~~aiQlAk~~------------Ga~Via~~~~~~k~~~~~~lGa-----------d~vi~~~~~~~~~~l~~~~~~~ 99 (177)
T d1o89a2 43 GVGSTAVALLHKL------------GYQVVAVSGRESTHEYLKSLGA-----------SRVLPRDEFAESRPLEKQVWAG 99 (177)
T ss_dssp HHHHHHHHHHHHT------------TCCEEEEESCGGGHHHHHHHTE-----------EEEEEGGGSSSCCSSCCCCEEE
T ss_pred cchHHHHHHHHHc------------CCCeEEEecchhHHHHHHhhcc-----------ccccccccHHHHHHHHhhcCCe
Confidence 4567788888875 5789999988887776654311 11121111111 234456788
Q ss_pred EEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 87 YTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 87 i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
++-.-+ ...+.+..+.|+++|+++.+-
T Consensus 100 vvD~Vg-------g~~~~~~l~~l~~~Griv~~G 126 (177)
T d1o89a2 100 AIDTVG-------DKVLAKVLAQMNYGGCVAACG 126 (177)
T ss_dssp EEESSC-------HHHHHHHHHTEEEEEEEEECC
T ss_pred eEEEcc-------hHHHHHHHHHhccccceEeec
Confidence 753221 345788899999999998753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.93 E-value=0.49 Score=29.60 Aligned_cols=78 Identities=15% Similarity=0.098 Sum_probs=52.7
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=-|+++| +...+++.+-+ .+.+|+..|.+++-++...+.+...+ .++.++..|+.+..
T Consensus 10 ~lITGas~G-IG~~ia~~la~---------~G~~V~l~~r~~~~l~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~ 73 (244)
T d1yb1a_ 10 VLITGAGHG-IGRLTAYEFAK---------LKSKLVLWDINKHGLEETAAKCKGLG------AKVHTFVVDCSNREDIYS 73 (244)
T ss_dssp EEEETTTSH-HHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHH
T ss_pred EEEeCCCcH-HHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHH
Confidence 344455444 55555554421 37899999999999988888887654 27888889977642
Q ss_pred ------CCCCCeeEEEEccccccc
Q psy890 79 ------IESDSYSAYTIAFGIRNV 96 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~~~ 96 (131)
...+..|+++.+.+....
T Consensus 74 ~~~~i~~~~g~idilinnag~~~~ 97 (244)
T d1yb1a_ 74 SAKKVKAEIGDVSILVNNAGVVYT 97 (244)
T ss_dssp HHHHHHHHTCCCSEEEECCCCCCC
T ss_pred HHHHHHHHcCCCceeEeecccccc
Confidence 123568999987776533
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.57 E-value=0.099 Score=33.02 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=34.2
Q ss_pred eEEecccccC--CCCCCCeeEEEEcccc----ccc-------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 68 RFLEANAEEL--PIESDSYSAYTIAFGI----RNV-------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 68 ~~~~~d~~~~--~~~~~~~D~i~~~~~l----~~~-------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.++.+|-.+. .++++++|+|++.-.- ... ......+.++.++|+|+|.+++.
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~ 70 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIF 70 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEe
Confidence 4555663332 3667889999884321 111 12467788999999999998774
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=89.72 E-value=0.12 Score=30.55 Aligned_cols=88 Identities=16% Similarity=0.082 Sum_probs=50.8
Q ss_pred ceeeeec--ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCC
Q psy890 2 YILFYLV--FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPI 79 (131)
Q Consensus 2 ~iLdig~--G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 79 (131)
+||-.|+ +.|.....+++.. +.++++++.+++-.+.+++. +.. .+ +-..+......
T Consensus 30 ~VlI~ga~G~vG~~aiqlak~~------------G~~vi~~~~~~~~~~~~~~l----Ga~-----~~-i~~~~~~~~~~ 87 (171)
T d1iz0a2 30 KVLVQAAAGALGTAAVQVARAM------------GLRVLAAASRPEKLALPLAL----GAE-----EA-ATYAEVPERAK 87 (171)
T ss_dssp EEEESSTTBHHHHHHHHHHHHT------------TCEEEEEESSGGGSHHHHHT----TCS-----EE-EEGGGHHHHHH
T ss_pred EEEEEeccccchhhhhhhhccc------------cccccccccccccccccccc----ccc-----ee-eehhhhhhhhh
Confidence 3455553 3456677777764 56899999888766665532 211 11 11111111011
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
....+|+|+-..+ + .+.+..+.|+|+|+++.+
T Consensus 88 ~~~g~D~v~d~~G----~----~~~~~~~~l~~~G~~v~~ 119 (171)
T d1iz0a2 88 AWGGLDLVLEVRG----K----EVEESLGLLAHGGRLVYI 119 (171)
T ss_dssp HTTSEEEEEECSC----T----THHHHHTTEEEEEEEEEC
T ss_pred ccccccccccccc----h----hHHHHHHHHhcCCcEEEE
Confidence 2356999987432 1 246778899999998874
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=89.50 E-value=0.17 Score=29.99 Aligned_cols=83 Identities=19% Similarity=0.202 Sum_probs=51.7
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccc--ccC-CCCCCCee
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANA--EEL-PIESDSYS 85 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~-~~~~~~~D 85 (131)
|-|.....+++.. +.+++++.-+++-.+.+++.=.. .+ +...+. ... ....+.+|
T Consensus 35 gVG~~avQlAk~~------------Ga~Viat~~s~~k~~~~~~lGad---------~v-i~~~~~~~~~~~~~~~~gvd 92 (167)
T d1tt7a2 35 GVGGIAVSMLNKR------------GYDVVASTGNREAADYLKQLGAS---------EV-ISREDVYDGTLKALSKQQWQ 92 (167)
T ss_dssp HHHHHHHHHHHHH------------TCCEEEEESSSSTHHHHHHHTCS---------EE-EEHHHHCSSCCCSSCCCCEE
T ss_pred hHHHHHHHHHHHc------------CCceEEEecCHHHHHHHHhhccc---------ce-EeccchhchhhhcccCCCce
Confidence 4556777777775 57899999887766666543211 12 111121 111 12346799
Q ss_pred EEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 86 AYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 86 ~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
+|+-.-. ...+.+..+.|+|+|+++++-
T Consensus 93 ~vid~vg-------g~~~~~~~~~l~~~G~iv~~G 120 (167)
T d1tt7a2 93 GAVDPVG-------GKQLASLLSKIQYGGSVAVSG 120 (167)
T ss_dssp EEEESCC-------THHHHHHHTTEEEEEEEEECC
T ss_pred EEEecCc-------HHHHHHHHHHhccCceEEEee
Confidence 9876533 335788899999999998753
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.37 E-value=0.93 Score=28.28 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=52.4
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----- 78 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 78 (131)
|=-|++ +.+...+++.+-+ .+.+|..+|.+++-++...+.+...... .++.++..|+.+..
T Consensus 7 lITGas-~GIG~aia~~la~---------~Ga~V~i~~r~~~~~~~~~~~l~~~~~~----~~~~~~~~Dv~~~~~v~~~ 72 (254)
T d2gdza1 7 LVTGAA-QGIGRAFAEALLL---------KGAKVALVDWNLEAGVQCKAALHEQFEP----QKTLFIQCDVADQQQLRDT 72 (254)
T ss_dssp EEETTT-SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHTTTSCG----GGEEEEECCTTSHHHHHHH
T ss_pred EEeCCC-CHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHhcCC----CcEEEEEeecCCHHHHHHH
Confidence 334444 4455556555421 3789999999998888877766543211 16888889987642
Q ss_pred C-----CCCCeeEEEEccccccccC
Q psy890 79 I-----ESDSYSAYTIAFGIRNVTR 98 (131)
Q Consensus 79 ~-----~~~~~D~i~~~~~l~~~~~ 98 (131)
+ .-+..|+++.+.......+
T Consensus 73 ~~~~~~~~G~iDilVnnAg~~~~~~ 97 (254)
T d2gdza1 73 FRKVVDHFGRLDILVNNAGVNNEKN 97 (254)
T ss_dssp HHHHHHHHSCCCEEEECCCCCCSSS
T ss_pred HHHHHHHcCCcCeeccccccccccc
Confidence 0 1257899999887765543
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.04 E-value=1.2 Score=27.80 Aligned_cols=101 Identities=10% Similarity=-0.025 Sum_probs=62.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEE-eCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC---
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVA-DINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--- 78 (131)
+|=.| |++-+...+++.+.+ .+.+|+.. +.++...+...+.+...+ .++.++..|+.+..
T Consensus 9 alITG-as~GIG~aia~~la~---------~G~~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~ 72 (259)
T d1ja9a_ 9 ALTTG-AGRGIGRGIAIELGR---------RGASVVVNYGSSSKAAEEVVAELKKLG------AQGVAIQADISKPSEVV 72 (259)
T ss_dssp EEETT-TTSHHHHHHHHHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHH
T ss_pred EEEeC-CCCHHHHHHHHHHHH---------cCCEEEEEcCCChHHHHHHHHHHHHcC------CCceEecCCCCCHHHHH
Confidence 44344 455555566555431 25677764 567777777777777654 26888888876532
Q ss_pred -------CCCCCeeEEEEccccccccC-------------------HHHHHHHHHHhccCCcEEEEE
Q psy890 79 -------IESDSYSAYTIAFGIRNVTR-------------------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 -------~~~~~~D~i~~~~~l~~~~~-------------------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...+..|+++.+.+...... .-...+.+.+.|+.+|.++++
T Consensus 73 ~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 73 ALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp HHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 12356999998777643321 134556666777777766554
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=88.85 E-value=0.83 Score=27.12 Aligned_cols=87 Identities=16% Similarity=0.074 Sum_probs=46.7
Q ss_pred cchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--------CCC
Q psy890 10 PGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP--------IES 81 (131)
Q Consensus 10 ~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--------~~~ 81 (131)
.|.....+++.. +.+++++--+++..+...+..+..+... -+.....+..+.. ...
T Consensus 42 vG~~aiqlAk~~------------Ga~vI~~v~~~~~~~~~~~~~~~lGad~----vi~~~~~~~~~~~~~v~~~~~~~g 105 (189)
T d1gu7a2 42 VGKYASQIGKLL------------NFNSISVIRDRPNLDEVVASLKELGATQ----VITEDQNNSREFGPTIKEWIKQSG 105 (189)
T ss_dssp HHHHHHHHHHHH------------TCEEEEEECCCTTHHHHHHHHHHHTCSE----EEEHHHHHCGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhc------------CCeEEEEEecccccchHHhhhhhccccE----EEeccccchhHHHHHHHHHHhhcc
Confidence 456777788775 4677776544444444444444444220 1111111221110 123
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
..+|+|+-.-+ ...+....+.|+|+|+++.+
T Consensus 106 ~~vdvv~D~vg-------~~~~~~~~~~l~~~G~~v~~ 136 (189)
T d1gu7a2 106 GEAKLALNCVG-------GKSSTGIARKLNNNGLMLTY 136 (189)
T ss_dssp CCEEEEEESSC-------HHHHHHHHHTSCTTCEEEEC
T ss_pred CCceEEEECCC-------cchhhhhhhhhcCCcEEEEE
Confidence 56899875422 23456778999999998764
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=88.74 E-value=0.074 Score=34.79 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=44.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC----HHHHHHHHHHhhhccCCCCCCCceeEEeccccc
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN----RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE 76 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 76 (131)
|+||=.| |+|.++..+++.+.+ .+.+|+++|.. ........ .... .++.++.+|+.+
T Consensus 1 MKiLItG-~tGfIG~~l~~~L~~---------~g~~V~~~d~~~~~~~~~~~~~~-~~~~--------~~~~~~~~Dl~d 61 (338)
T d1udca_ 1 MRVLVTG-GSGYIGSHTCVQLLQ---------NGHDVIILDNLCNSKRSVLPVIE-RLGG--------KHPTFVEGDIRN 61 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHH---------TTCEEEEEECCSSCCTTHHHHHH-HHHT--------SCCEEEECCTTC
T ss_pred CEEEEEC-CCCHHHHHHHHHHHH---------CcCEEEEEECCCCcchhhHHHHH-hhcC--------CCCEEEEeecCC
Confidence 6766554 788998888887742 25689999842 22222211 1111 178899999876
Q ss_pred CC-----CCCCCeeEEEEcc
Q psy890 77 LP-----IESDSYSAYTIAF 91 (131)
Q Consensus 77 ~~-----~~~~~~D~i~~~~ 91 (131)
.. +....+|+|+-..
T Consensus 62 ~~~l~~~~~~~~~d~ViHlA 81 (338)
T d1udca_ 62 EALMTEILHDHAIDTVIHFA 81 (338)
T ss_dssp HHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHhccCCCEEEECC
Confidence 53 2334689987544
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=87.67 E-value=1 Score=26.18 Aligned_cols=101 Identities=12% Similarity=-0.017 Sum_probs=51.8
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCCCCC
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELPIES 81 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 81 (131)
+||=+|. |..+..+++.+... ...+++.+.-+.+-.+...+.+. .... ++.++...-
T Consensus 26 ~ilviGa--G~~g~~v~~~L~~~--------g~~~i~v~nRt~~ka~~l~~~~~-----------~~~~--~~~~~~~~l 82 (159)
T d1gpja2 26 TVLVVGA--GEMGKTVAKSLVDR--------GVRAVLVANRTYERAVELARDLG-----------GEAV--RFDELVDHL 82 (159)
T ss_dssp EEEEESC--CHHHHHHHHHHHHH--------CCSEEEEECSSHHHHHHHHHHHT-----------CEEC--CGGGHHHHH
T ss_pred eEEEECC--CHHHHHHHHHHHhc--------CCcEEEEEcCcHHHHHHHHHhhh-----------cccc--cchhHHHHh
Confidence 3555654 66777666665421 23578899887644443333331 2222 222322112
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEeccCCC
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLEFSHVN 125 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~~~~~~ 125 (131)
..+|+|++...-...---...++...+.-+.+..++++|.+.|.
T Consensus 83 ~~~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 83 ARSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 126 (159)
T ss_dssp HTCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred ccCCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence 36999999755322111123344444444455567788987664
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=87.10 E-value=0.33 Score=31.07 Aligned_cols=75 Identities=12% Similarity=0.012 Sum_probs=45.6
Q ss_pred ceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEe-CCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC--
Q psy890 2 YILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVAD-INRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-- 78 (131)
Q Consensus 2 ~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D-~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-- 78 (131)
+|| |-.|+|.+...+.+.+.+ .+.+|+++| .+............... +++++.+|+.+..
T Consensus 2 KIL-VTGatGfIGs~lv~~Ll~---------~g~~V~~id~~~~~~~~~~~~~~~~~~-------~~~~i~~Di~~~~~l 64 (338)
T d1orra_ 2 KLL-ITGGCGFLGSNLASFALS---------QGIDLIVFDNLSRKGATDNLHWLSSLG-------NFEFVHGDIRNKNDV 64 (338)
T ss_dssp EEE-EETTTSHHHHHHHHHHHH---------TTCEEEEEECCCSTTHHHHHHHHHTTC-------CCEEEECCTTCHHHH
T ss_pred EEE-EECCCcHHHHHHHHHHHH---------CcCEEEEEECCCcccchhHHHHhhccC-------CcEEEEcccCCHHHH
Confidence 455 566889999888887642 257899998 33322222222222222 7899999987642
Q ss_pred ---CCCCCeeEEEEcccc
Q psy890 79 ---IESDSYSAYTIAFGI 93 (131)
Q Consensus 79 ---~~~~~~D~i~~~~~l 93 (131)
+...++|.|+-....
T Consensus 65 ~~~~~~~~~d~Vih~aa~ 82 (338)
T d1orra_ 65 TRLITKYMPDSCFHLAGQ 82 (338)
T ss_dssp HHHHHHHCCSEEEECCCC
T ss_pred HHHHHhcCCceEEeeccc
Confidence 223357988765544
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=86.96 E-value=0.055 Score=31.54 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=26.1
Q ss_pred CCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEEe
Q psy890 82 DSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCLE 120 (131)
Q Consensus 82 ~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~~ 120 (131)
..+|+|+..--- .+....++.+.+.+.++..++...
T Consensus 62 ~~~D~iii~vka---~~~~~~~~~l~~~~~~~~~Iv~~q 97 (167)
T d1ks9a2 62 ATSDLLLVTLKA---WQVSDAVKSLASTLPVTTPILLIH 97 (167)
T ss_dssp HTCSEEEECSCG---GGHHHHHHHHHTTSCTTSCEEEEC
T ss_pred cccceEEEeecc---cchHHHHHhhccccCcccEEeecc
Confidence 468999874322 356778888999999988877654
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=86.93 E-value=2.3 Score=26.49 Aligned_cols=76 Identities=11% Similarity=-0.003 Sum_probs=50.0
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=-|++ +.+...+++.+-+ .+.+|+..|.+++-++...+.+...+ .++.++..|+.+..
T Consensus 11 alITGas-~GIG~aia~~la~---------~Ga~V~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dv~~~~~v~~ 74 (259)
T d2ae2a_ 11 ALVTGGS-RGIGYGIVEELAS---------LGASVYTCSRNQKELNDCLTQWRSKG------FKVEASVCDLSSRSERQE 74 (259)
T ss_dssp EEEESCS-SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT------CEEEEEECCTTCHHHHHH
T ss_pred EEEeCCC-CHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC------CCceEEEeeCCCHHHHHH
Confidence 3434444 4455555555431 36799999999999988888877654 26788888876532
Q ss_pred -C-----C-CCCeeEEEEccccc
Q psy890 79 -I-----E-SDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~-----~-~~~~D~i~~~~~l~ 94 (131)
+ . ....|+++.+.+..
T Consensus 75 ~~~~~~~~~~~~idilvnnAG~~ 97 (259)
T d2ae2a_ 75 LMNTVANHFHGKLNILVNNAGIV 97 (259)
T ss_dssp HHHHHHHHTTTCCCEEEECCCCC
T ss_pred HHHHHHHHhCCCceEEEECCcee
Confidence 0 1 23689999876653
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.87 E-value=0.89 Score=28.47 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=50.0
Q ss_pred cccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C---
Q psy890 8 VFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I--- 79 (131)
Q Consensus 8 ~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~--- 79 (131)
.|++.+...+++.+-+ .+.+|+.+|.+++.++...+.++..+ .++.++..|+.+.. +
T Consensus 18 Gas~GIG~aia~~la~---------~Ga~V~~~~r~~~~~~~~~~~l~~~g------~~~~~~~~Dvs~~~~~~~~~~~~ 82 (255)
T d1fmca_ 18 GAGAGIGKEIAITFAT---------AGASVVVSDINADAANHVVDEIQQLG------GQAFACRCDITSEQELSALADFA 82 (255)
T ss_dssp TTTSHHHHHHHHHHHT---------TTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHcC------CcEEEEEccCCCHHHHHHHHHHH
Confidence 3445566666666531 37899999999999888888877654 26888888977632 0
Q ss_pred --CCCCeeEEEEccccc
Q psy890 80 --ESDSYSAYTIAFGIR 94 (131)
Q Consensus 80 --~~~~~D~i~~~~~l~ 94 (131)
.-+..|+++.+.+..
T Consensus 83 ~~~~g~iDilvnnAG~~ 99 (255)
T d1fmca_ 83 ISKLGKVDILVNNAGGG 99 (255)
T ss_dssp HHHHSSCCEEEECCCCC
T ss_pred HHHcCCCCEeeeCCcCC
Confidence 125789999876653
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=85.89 E-value=2 Score=24.76 Aligned_cols=90 Identities=10% Similarity=0.028 Sum_probs=53.7
Q ss_pred ceeeeec-ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecc-cccC--
Q psy890 2 YILFYLV-FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEAN-AEEL-- 77 (131)
Q Consensus 2 ~iLdig~-G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~-- 77 (131)
+||=.|+ |.|..+..+++... ...++++|.+++-.+.+++.=. ...+... ..+.
T Consensus 31 tVlI~GaGGvG~~aiq~ak~~G-----------~~~vi~~~~~~~k~~~ak~lGa-----------~~~i~~~~~~~~~~ 88 (176)
T d2fzwa2 31 VCAVFGLGGVGLAVIMGCKVAG-----------ASRIIGVDINKDKFARAKEFGA-----------TECINPQDFSKPIQ 88 (176)
T ss_dssp EEEEECCSHHHHHHHHHHHHHT-----------CSEEEEECSCGGGHHHHHHHTC-----------SEEECGGGCSSCHH
T ss_pred EEEEecchhHHHHHHHHHHHHh-----------cCceEEEcccHHHHHHHHHhCC-----------cEEEeCCchhhHHH
Confidence 3555566 45566777777764 5789999999887777764311 1111111 1110
Q ss_pred ----CCCCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEEE
Q psy890 78 ----PIESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 78 ----~~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
......+|+|+-.-+ ....+......+++||.+.++
T Consensus 89 ~~~~~~~~~g~D~vid~~G------~~~~~~~~~~~~~~g~~~~~v 128 (176)
T d2fzwa2 89 EVLIEMTDGGVDYSFECIG------NVKVMRAALEACHKGWGVSVV 128 (176)
T ss_dssp HHHHHHTTSCBSEEEECSC------CHHHHHHHHHTBCTTTCEEEE
T ss_pred HHHHHHcCCCCcEeeecCC------CHHHHHHHHHhhcCCceeEEE
Confidence 012356899987543 234567788889998776554
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=84.94 E-value=1.6 Score=27.30 Aligned_cols=74 Identities=11% Similarity=0.035 Sum_probs=49.3
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+++| +...+++.+-+ .+.+|+.+|.+++.++.+.+.+...+ .+.++..|+.+..
T Consensus 9 alITGas~G-IG~aia~~la~---------~Ga~V~i~~r~~~~~~~~~~~l~~~~-------~~~~~~~Dv~~~~~v~~ 71 (268)
T d2bgka1 9 AIITGGAGG-IGETTAKLFVR---------YGAKVVIADIADDHGQKVCNNIGSPD-------VISFVHCDVTKDEDVRN 71 (268)
T ss_dssp EEEESTTSH-HHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHCCTT-------TEEEEECCTTCHHHHHH
T ss_pred EEEeCCCcH-HHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHhcCCC-------ceEEEEccCCCHHHHHH
Confidence 444555544 55555555421 36899999999988888877775543 6788888876532
Q ss_pred -C-----CCCCeeEEEEcccc
Q psy890 79 -I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l 93 (131)
+ .-+..|+++.+.+.
T Consensus 72 ~~~~~~~~~g~iD~lVnnAG~ 92 (268)
T d2bgka1 72 LVDTTIAKHGKLDIMFGNVGV 92 (268)
T ss_dssp HHHHHHHHHSCCCEEEECCCC
T ss_pred HHHHHHHHcCCcceecccccc
Confidence 1 12578999987664
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=84.88 E-value=2.9 Score=25.71 Aligned_cols=53 Identities=9% Similarity=0.019 Sum_probs=38.7
Q ss_pred eEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----------CCCCCeeEEEEccccc
Q psy890 36 HVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----------IESDSYSAYTIAFGIR 94 (131)
Q Consensus 36 ~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----------~~~~~~D~i~~~~~l~ 94 (131)
.+...+.+++.++...+.++..+ .++.++..|+.+.. ..-+..|+++.+.+..
T Consensus 34 ~v~~~~r~~~~l~~~~~~~~~~g------~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~~ 96 (240)
T d2bd0a1 34 VLVLSSRTAADLEKISLECRAEG------ALTDTITADISDMADVRRLTTHIVERYGHIDCLVNNAGVG 96 (240)
T ss_dssp EEEEEESCHHHHHHHHHHHHTTT------CEEEEEECCTTSHHHHHHHHHHHHHHTSCCSEEEECCCCC
T ss_pred EEEEEeCCHHHHHHHHHHHHhcC------CcEEEEEecCCCHHHHHHHHHHHHHHcCCcceeecccccc
Confidence 48899999999888887776654 26788888877642 1135789999876654
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=84.69 E-value=1.6 Score=23.74 Aligned_cols=76 Identities=12% Similarity=0.075 Sum_probs=46.5
Q ss_pred CeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEeccccc-CC-CCCCCeeEEEEccccccccCHHHHHHHHHHhccC
Q psy890 35 PHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEE-LP-IESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKP 112 (131)
Q Consensus 35 ~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~-~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p 112 (131)
.++..+|-++......++.++..++ ++.....+..+ +. .....||+|++-..+..+ +--..+.++++. .|
T Consensus 2 krILivDD~~~~~~~l~~~L~~~g~------~v~~~a~~~~~al~~~~~~~~dliilD~~mp~~-~G~e~~~~ir~~-~~ 73 (118)
T d1u0sy_ 2 KRVLIVDDAAFMRMMLKDIITKAGY------EVAGEATNGREAVEKYKELKPDIVTMDITMPEM-NGIDAIKEIMKI-DP 73 (118)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTC------EEEEEESSHHHHHHHHHHHCCSEEEEECSCGGG-CHHHHHHHHHHH-CT
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC------ceEEEECCHHHHHHHHHhccCCEEEEecCCCCC-CHHHHHHHHHHh-CC
Confidence 4789999999888888888877653 33333334322 11 234568999998765544 444556666554 44
Q ss_pred CcEEEE
Q psy890 113 GGRFLC 118 (131)
Q Consensus 113 ~G~l~~ 118 (131)
+-.+++
T Consensus 74 ~~pvi~ 79 (118)
T d1u0sy_ 74 NAKIIV 79 (118)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 444444
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=84.35 E-value=0.75 Score=28.27 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=32.2
Q ss_pred eEEecccccC--CCCCCCeeEEEEccccc-------cc-------cCHHHHHHHHHHhccCCcEEEEE
Q psy890 68 RFLEANAEEL--PIESDSYSAYTIAFGIR-------NV-------TRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 68 ~~~~~d~~~~--~~~~~~~D~i~~~~~l~-------~~-------~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
+++.+|-.+. .++++++|+|++.-.-. .. ......+.++.+.|+|+|.+++.
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~ 73 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIF 73 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccc
Confidence 3555663332 25667888888843211 11 11346788999999999988754
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=83.88 E-value=3.1 Score=25.73 Aligned_cols=75 Identities=12% Similarity=-0.017 Sum_probs=50.3
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----- 78 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 78 (131)
|=-|++ +.+...+++.+-+ .+.+|..+|.+++.++...+.+...+ .++.++..|+.+..
T Consensus 5 lITGas-~GIG~aia~~la~---------~Ga~V~~~~r~~~~l~~~~~~i~~~g------~~~~~~~~Dv~~~~~v~~~ 68 (255)
T d1gega_ 5 LVTGAG-QGIGKAIALRLVK---------DGFAVAIADYNDATAKAVASEINQAG------GHAVAVKVDVSDRDQVFAA 68 (255)
T ss_dssp EEETTT-SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTSHHHHHHH
T ss_pred EEcCCc-cHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeeCCCHHHHHHH
Confidence 334444 4455556555431 36899999999999988888777654 26888888977642
Q ss_pred -----CCCCCeeEEEEccccc
Q psy890 79 -----IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~ 94 (131)
-.-+..|+++.+.+..
T Consensus 69 ~~~~~~~~g~iDilVnnAG~~ 89 (255)
T d1gega_ 69 VEQARKTLGGFDVIVNNAGVA 89 (255)
T ss_dssp HHHHHHHTTCCCEEEECCCCC
T ss_pred HHHHHHHhCCccEEEeccccc
Confidence 1135799999876543
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=83.83 E-value=2.6 Score=24.28 Aligned_cols=98 Identities=11% Similarity=0.077 Sum_probs=51.8
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccc---cCCC
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAE---ELPI 79 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~ 79 (131)
|-=+|+ |.+...++..+.+ .+.+|+++|.++.-++..++.-......+ .......... +...
T Consensus 4 iaIiGa--G~~G~~~A~~l~~---------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~e 68 (184)
T d1bg6a2 4 YAVLGL--GNGGHAFAAYLAL---------KGQSVLAWDIDAQRIKEIQDRGAIIAEGP----GLAGTAHPDLLTSDIGL 68 (184)
T ss_dssp EEEECC--SHHHHHHHHHHHH---------TTCEEEEECSCHHHHHHHHHHTSEEEESS----SCCEEECCSEEESCHHH
T ss_pred EEEECc--cHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHcCCCchhhh----hhhhhhhhhhhhhhhHh
Confidence 334555 4455555444431 25789999999877776654321111000 1111111100 0000
Q ss_pred CCCCeeEEEEccccccccCHHHHHHHHHHhccCCcEEEE
Q psy890 80 ESDSYSAYTIAFGIRNVTRIDKALSEAYRVLKPGGRFLC 118 (131)
Q Consensus 80 ~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~p~G~l~~ 118 (131)
.-...|+|+..- ........+.++..+++++..+++
T Consensus 69 ~~~~aD~iii~v---~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 69 AVKDADVILIVV---PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp HHTTCSEEEECS---CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred HhcCCCEEEEEE---chhHHHHHHHHhhhccCCCCEEEE
Confidence 014579998743 223457788999999999887654
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=83.77 E-value=0.36 Score=30.81 Aligned_cols=54 Identities=19% Similarity=0.134 Sum_probs=35.4
Q ss_pred ceeEEeccccc-C-CCCCCCeeEEEEccccc--------------cccCHHHHHHHHHHhccCCcEEEEE
Q psy890 66 RLRFLEANAEE-L-PIESDSYSAYTIAFGIR--------------NVTRIDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 66 ~~~~~~~d~~~-~-~~~~~~~D~i~~~~~l~--------------~~~~~~~~l~~~~~~L~p~G~l~~~ 119 (131)
.-+++.+|-.+ + .++++++|+|+..-.-. +.......+.+++++|+|+|.+++.
T Consensus 12 ~~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~ 81 (320)
T d1booa_ 12 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVD 81 (320)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccc
Confidence 34667777333 2 25677899998842211 0112467799999999999998874
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.57 E-value=3.5 Score=25.67 Aligned_cols=100 Identities=15% Similarity=0.051 Sum_probs=60.2
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCC-HHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADIN-RAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
|=.|+ ++.+...+++.+.. .+.+|+..|.+ ++.++...+.++..+ .++.++..|..+..
T Consensus 22 lITGa-s~GIG~aia~~la~---------~Ga~Vvi~~~~~~~~~~~~~~~~~~~g------~~~~~~~~D~~~~~~v~~ 85 (272)
T d1g0oa_ 22 LVTGA-GRGIGREMAMELGR---------RGCKVIVNYANSTESAEEVVAAIKKNG------SDAACVKANVGVVEDIVR 85 (272)
T ss_dssp EETTT-TSHHHHHHHHHHHH---------TTCEEEEEESSCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHH
T ss_pred EEeCC-CCHHHHHHHHHHHH---------cCCEEEEEeCCchHHHHHHHHHHHhhC------CceeeEeCCCCCHHHHHH
Confidence 33444 44455555555431 36789998876 556666666665544 26788888876532
Q ss_pred ------CCCCCeeEEEEcccccccc--------C-----------HHHHHHHHHHhccCCcEEEEE
Q psy890 79 ------IESDSYSAYTIAFGIRNVT--------R-----------IDKALSEAYRVLKPGGRFLCL 119 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~~~~--------~-----------~~~~l~~~~~~L~p~G~l~~~ 119 (131)
...+..|+++.+....... + .-...+.+.+.|+.+|..+++
T Consensus 86 ~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i 151 (272)
T d1g0oa_ 86 MFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILM 151 (272)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEE
T ss_pred HHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccc
Confidence 0125689998876543222 0 234466677888888877665
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=83.04 E-value=3.6 Score=25.33 Aligned_cols=72 Identities=11% Similarity=-0.065 Sum_probs=45.8
Q ss_pred eeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----
Q psy890 4 LFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP----- 78 (131)
Q Consensus 4 Ldig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~----- 78 (131)
|=-|++ +.+...+++.+-+ .+.+|..+|.+++.++...+.+.. +...+..|+.+..
T Consensus 8 lITGas-~GIG~a~a~~l~~---------~G~~Vv~~~r~~~~l~~~~~~~~~---------~~~~~~~Dv~~~~~v~~~ 68 (243)
T d1q7ba_ 8 LVTGAS-RGIGRAIAETLAA---------RGAKVIGTATSENGAQAISDYLGA---------NGKGLMLNVTDPASIESV 68 (243)
T ss_dssp EESSCS-SHHHHHHHHHHHH---------TTCEEEEEESSHHHHHHHHHHHGG---------GEEEEECCTTCHHHHHHH
T ss_pred EEeCCC-CHHHHHHHHHHHH---------cCCEEEEEeCCHHHHHHHHHHhCC---------CCcEEEEEecCHHHhhhh
Confidence 334444 4455555555431 367999999999888877766533 5677778876532
Q ss_pred -----CCCCCeeEEEEccccc
Q psy890 79 -----IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -----~~~~~~D~i~~~~~l~ 94 (131)
..-+..|+++.+.+..
T Consensus 69 ~~~~~~~~g~iDilVnnAg~~ 89 (243)
T d1q7ba_ 69 LEKIRAEFGEVDILVNNAGIT 89 (243)
T ss_dssp HHHHHHHTCSCSEEEECCCCC
T ss_pred hhhhhcccCCcceehhhhhhc
Confidence 1135789999876543
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.84 E-value=3.6 Score=25.28 Aligned_cols=72 Identities=8% Similarity=-0.033 Sum_probs=45.1
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=.|+++ .+...+++.+-+ .+.+|+.+|.+++-++...+... .+..+..|+.+..
T Consensus 10 ~lITGas~-GIG~aia~~la~---------~G~~V~~~~r~~~~l~~~~~~~~----------~~~~~~~Dv~d~~~v~~ 69 (244)
T d1pr9a_ 10 VLVTGAGK-GIGRGTVQALHA---------TGARVVAVSRTQADLDSLVRECP----------GIEPVCVDLGDWEATER 69 (244)
T ss_dssp EEEESTTS-HHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHST----------TCEEEECCTTCHHHHHH
T ss_pred EEEeCCCC-HHHHHHHHHHHH---------cCCEEEEEECCHHHHHHHHHhcC----------CCeEEEEeCCCHHHHHH
Confidence 44455544 455555555421 36899999999987776655432 5666777866532
Q ss_pred --CCCCCeeEEEEccccc
Q psy890 79 --IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 --~~~~~~D~i~~~~~l~ 94 (131)
-.-++.|+++.+.+..
T Consensus 70 ~~~~~g~iDilVnnAg~~ 87 (244)
T d1pr9a_ 70 ALGSVGPVDLLVNNAAVA 87 (244)
T ss_dssp HHTTCCCCCEEEECCCCC
T ss_pred HHHHhCCceEEEeccccc
Confidence 1235799999876654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=82.22 E-value=2.9 Score=23.65 Aligned_cols=43 Identities=16% Similarity=0.098 Sum_probs=29.3
Q ss_pred CceeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHH
Q psy890 1 MYILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQR 53 (131)
Q Consensus 1 ~~iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~ 53 (131)
|+|.-||| |..+..+++.+.+. ...++++.|.+++..+...+.
T Consensus 1 MkI~fIG~--G~MG~ai~~~l~~~--------~~~~i~v~~r~~~~~~~l~~~ 43 (152)
T d1yqga2 1 MNVYFLGG--GNMAAAVAGGLVKQ--------GGYRIYIANRGAEKRERLEKE 43 (152)
T ss_dssp CEEEEECC--SHHHHHHHHHHHHH--------CSCEEEEECSSHHHHHHHHHH
T ss_pred CEEEEEcC--cHHHHHHHHHHHHC--------CCCcEEEEeCChhHHHHhhhh
Confidence 77888877 55766666644211 136899999999877766554
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=82.17 E-value=2.3 Score=26.23 Aligned_cols=53 Identities=11% Similarity=0.047 Sum_probs=35.3
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC-----C-----CCCCeeEEEEcccc
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP-----I-----ESDSYSAYTIAFGI 93 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~-----~-----~~~~~D~i~~~~~l 93 (131)
+.+|...+.++...+.+.+.....+ +..++..|+.+.. + .-+..|+++.+...
T Consensus 34 Ga~V~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~D~~~~~~v~~~~~~~~~~~g~iDilVnnag~ 96 (256)
T d1ulua_ 34 GAEVALSYQAERLRPEAEKLAEALG-------GALLFRADVTQDEELDALFAGVKEAFGGLDYLVHAIAF 96 (256)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTT-------CCEEEECCTTCHHHHHHHHHHHHHHHSSEEEEEECCCC
T ss_pred CCEEEEEeCcHHHHHHHHHhhhccC-------cccccccccCCHHHHHHHHHHHHHhcCCceEEEecccc
Confidence 6789999998877776665555444 5667778866532 0 12578998876543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=81.69 E-value=4.1 Score=25.15 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=48.7
Q ss_pred ccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----------
Q psy890 9 FPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---------- 78 (131)
Q Consensus 9 G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---------- 78 (131)
|++-+...+++.+-+ .+.+|..+|.+++.++...+.++..+ .++.++..|+.+..
T Consensus 10 as~GIG~aia~~la~---------~Ga~V~i~~r~~~~l~~~~~~l~~~g------~~~~~~~~Dvs~~~~v~~~~~~~~ 74 (257)
T d2rhca1 10 ATSGIGLEIARRLGK---------EGLRVFVCARGEEGLRTTLKELREAG------VEADGRTCDVRSVPEIEALVAAVV 74 (257)
T ss_dssp CSSHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHTT------CCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHhcC------CcEEEEEeecCCHHHHHHHHHHHH
Confidence 344455555555421 36899999999999998888877654 27888889977642
Q ss_pred CCCCCeeEEEEccccc
Q psy890 79 IESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 ~~~~~~D~i~~~~~l~ 94 (131)
..-+..|+++.+.+..
T Consensus 75 ~~~g~iDilVnnAG~~ 90 (257)
T d2rhca1 75 ERYGPVDVLVNNAGRP 90 (257)
T ss_dssp HHTCSCSEEEECCCCC
T ss_pred HHhCCCCEEEeccccc
Confidence 1135789999876653
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.61 E-value=4.2 Score=25.13 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=47.9
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=-|++ +.+...+++.+-+ .+.+|..+|.+++-++...+.+....- .++.++..|+.+..
T Consensus 8 ~lITGas-~GIG~aia~~la~---------~Ga~V~i~~r~~~~~~~~~~~l~~~~g-----~~~~~~~~Dv~~~~~v~~ 72 (251)
T d1vl8a_ 8 ALVTGGS-RGLGFGIAQGLAE---------AGCSVVVASRNLEEASEAAQKLTEKYG-----VETMAFRCDVSNYEEVKK 72 (251)
T ss_dssp EEEETTT-SHHHHHHHHHHHH---------TTCEEEEEESCHHHHHHHHHHHHHHHC-----CCEEEEECCTTCHHHHHH
T ss_pred EEEeCCC-CHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHHHHHhC-----CcEEEEEccCCCHHHHHH
Confidence 3444544 4455555555431 368999999999888776665543221 16788888877532
Q ss_pred -C-----CCCCeeEEEEccccc
Q psy890 79 -I-----ESDSYSAYTIAFGIR 94 (131)
Q Consensus 79 -~-----~~~~~D~i~~~~~l~ 94 (131)
+ .-+..|+++.+.+..
T Consensus 73 ~~~~~~~~~g~iDiLVnnAG~~ 94 (251)
T d1vl8a_ 73 LLEAVKEKFGKLDTVVNAAGIN 94 (251)
T ss_dssp HHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHcCCCCEEEECCCCC
Confidence 1 124789999876653
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=81.56 E-value=4.2 Score=25.14 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=58.9
Q ss_pred eeeeecccchhhHHHhhhhcCCCCCCCCCCCCCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccCC----
Q psy890 3 ILFYLVFPGDIAFRFLNYVDKLPPNTLSEHCAPHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEELP---- 78 (131)
Q Consensus 3 iLdig~G~G~~~~~l~~~~~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~---- 78 (131)
+|=-|++ +-+...+++.+-+ .+.+|..+|.+++.++...+.+.. +..++..|+.+..
T Consensus 9 alITGas-~GIG~aia~~la~---------~Ga~V~~~~~~~~~~~~~~~~~~~---------~~~~~~~Dv~~~~~~~~ 69 (253)
T d1hxha_ 9 ALVTGGA-SGVGLEVVKLLLG---------EGAKVAFSDINEAAGQQLAAELGE---------RSMFVRHDVSSEADWTL 69 (253)
T ss_dssp EEETTTT-SHHHHHHHHHHHH---------TTCEEEEECSCHHHHHHHHHHHCT---------TEEEECCCTTCHHHHHH
T ss_pred EEEeCCC-CHHHHHHHHHHHH---------CCCEEEEEECCHHHHHHHHHHhCC---------CeEEEEeecCCHHHHHH
Confidence 3434444 4455555555431 368999999999888777665532 6677778876532
Q ss_pred ------CCCCCeeEEEEcccccccc--------C-----------HHHHHHHHHHhcc-CCcEEEEEe
Q psy890 79 ------IESDSYSAYTIAFGIRNVT--------R-----------IDKALSEAYRVLK-PGGRFLCLE 120 (131)
Q Consensus 79 ------~~~~~~D~i~~~~~l~~~~--------~-----------~~~~l~~~~~~L~-p~G~l~~~~ 120 (131)
..-+..|+++.+.+..... + .-...+.+.+.|+ .+|.++.+.
T Consensus 70 ~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~is 137 (253)
T d1hxha_ 70 VMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMA 137 (253)
T ss_dssp HHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred HHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceeccc
Confidence 0125789999877653221 1 1223445556664 468877654
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=81.51 E-value=4.8 Score=25.75 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=53.4
Q ss_pred CCeEEEEeCCHHHHHHHHHHhhhccCCCCCCCceeEEecccccC-C-------CCCCCeeEEEEcccccccc--CHHHHH
Q psy890 34 APHVTVADINRAMLDVGEQRARDLFKVPVPNPRLRFLEANAEEL-P-------IESDSYSAYTIAFGIRNVT--RIDKAL 103 (131)
Q Consensus 34 ~~~~~~~D~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~-------~~~~~~D~i~~~~~l~~~~--~~~~~l 103 (131)
..+++=+|. +++++.-++.++..+..+ +.+...+..|+.+. . +..+.--++++-.++++++ +....+
T Consensus 112 ~~~~~EvD~-p~vi~~K~~~l~~~~~~~--~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl~i~EGvl~YL~~~~~~~ll 188 (297)
T d2uyoa1 112 GTTVYEIDQ-PKVLAYKSTTLAEHGVTP--TADRREVPIDLRQDWPPALRSAGFDPSARTAWLAEGLLMYLPATAQDGLF 188 (297)
T ss_dssp TCEEEEEEC-HHHHHHHHHHHHHTTCCC--SSEEEEEECCTTSCHHHHHHHTTCCTTSCEEEEECSCGGGSCHHHHHHHH
T ss_pred CceEEEcCC-hHHHHHHHHHHHhcCCCC--CceEEEecccccchHHHHHHhcCCCCCCCEEEEEccccccCCHHHHHHHH
Confidence 567888885 667776666666543322 12567777777642 1 2233345566666677765 567889
Q ss_pred HHHHHhccCCcEEEE
Q psy890 104 SEAYRVLKPGGRFLC 118 (131)
Q Consensus 104 ~~~~~~L~p~G~l~~ 118 (131)
..+.+...||+.+++
T Consensus 189 ~~i~~~~~~GS~l~~ 203 (297)
T d2uyoa1 189 TEIGGLSAVGSRIAV 203 (297)
T ss_dssp HHHHHTCCTTCEEEE
T ss_pred HHHHHhCCCCCEEEE
Confidence 999999999999866
|