Psyllid ID: psy8971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLGKK
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcccccccEEEcccEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccEEccccEccccccccccEHcccccccccccccccccccccccccccccccccccccHHHHHHHHccc
Coil and Loop (DISEMBL)
MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWEshnkgvnhpVLGAVLVQkscpwniatkgtvtndhrgkgrtqlsllprslqvstpatkpslnnndstpgsdsktstmksnDDFRNMLLGKK
Flexible Loop (DISEMBL)
MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATkgtvtndhrgkgrtqlsllprslqvstpatkpslnnndstpgsdsktstmksnddfrnmllgkk
Low Complexity Region (SEG)
MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLGKK
Disordered region (IsUnstruct)
******************MLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVT***********************************************************
Disordered Region (DISOPRED)
***GNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLL**************************************NMLLGK*
Disordered Region (DISEMBL)
MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLLPRSLQ*************************MKSNDDFRNMLLGKK
Disordered Region (DISPRO)
*ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTN******RTQL*************************************DDFRNMLLGK*
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKSCPWNIATKGTVTNDHRGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLGKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q8R1I1	64	Cytochrome b-c1 complex s	yes	N/A	0.310	0.640	0.536	1e-06
P00130	64	Cytochrome b-c1 complex s	yes	N/A	0.340	0.703	0.488	3e-06
Q9UDW1	63	Cytochrome b-c1 complex s	no	N/A	0.340	0.714	0.444	4e-05
O74433	67	Cytochrome b-c1 complex s	no	N/A	0.333	0.656	0.454	8e-05

>sp|Q8R1I1|QCR9_MOUSE Cytochrome b-c1 complex subunit 9 OS=Mus musculus GN=Uqcr10 PE=1 SV=1

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +Y+LLF++TS+F LT+AVGA  FER FD+  D ++E  N+G
Sbjct: 10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINEG 50

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit interacts with cytochrome c1.
Mus musculus (taxid: 10090)

>sp|P00130|QCR9_BOVIN Cytochrome b-c1 complex subunit 9 OS=Bos taurus GN=UQCR10 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 3  LGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          L   +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 6  LTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 50

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit interacts with cytochrome c1.

Bos taurus (taxid: 9913)

>sp|Q9UDW1|QCR9_HUMAN Cytochrome b-c1 complex subunit 9 OS=Homo sapiens GN=UQCR10 PE=1 SV=3

 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 3  LGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          L + +Y+LLF++TS+F LT+ VG   FER FD+  D +++  N+G
Sbjct: 6  LTSKLYSLLFRRTSTFALTIIVGVMFFERAFDQGADAIYDHINEG 50

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. This subunit interacts with cytochrome c1.

Homo sapiens (taxid: 9606)

>sp|O74433|QCR9_SCHPO Cytochrome b-c1 complex subunit 9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=qcr9 PE=3 SV=2

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGV 48
          +T+YN+ F++ SSF  T+ V AF  + GFD  TD VW+  N G+
Sbjct: 4  STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGL 47

This is a component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is part of the mitochondrial respiratory chain. Qcr9 is required for formation of a fully functional complex.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
225713402	62	Cytochrome b-c1 complex subunit 9 [Lepeo	0.310	0.661	0.658	3e-08
225708902	61	Cytochrome b-c1 complex subunit 9 [Calig	0.310	0.672	0.585	2e-07
327291470	62	PREDICTED: cytochrome b-c1 complex subun	0.356	0.758	0.574	2e-07
225719054	62	Cytochrome b-c1 complex subunit 9 [Calig	0.325	0.693	0.558	5e-07
432885948	63	PREDICTED: cytochrome b-c1 complex subun	0.356	0.746	0.574	2e-06
406700534	67	ubiquinol-cytochrome c reductase complex	0.356	0.701	0.489	2e-06
229366812	62	Cytochrome b-c1 complex subunit 9 [Anopl	0.356	0.758	0.531	5e-06
348532821	63	PREDICTED: cytochrome b-c1 complex subun	0.356	0.746	0.531	5e-06
392874134	62	cytochrome b-c1 complex subunit 9-like p	0.356	0.758	0.531	7e-06
350596877	141	PREDICTED: hypothetical protein LOC10073	0.318	0.297	0.547	8e-06

>gi|225713402|gb|ACO12547.1| Cytochrome b-c1 complex subunit 9 [Lepeophtheirus salmonis] gi|290561883|gb|ADD38339.1| Cytochrome b-c1 complex subunit 9 [Lepeophtheirus salmonis]

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 34/41 (82%)

Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +YN LFK+TS+F LT+A+G+   ERGFD LTDYVWE+ NKG
Sbjct: 4  LYNALFKRTSTFFLTIAIGSIFAERGFDALTDYVWETSNKG 44

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225708902|gb|ACO10297.1| Cytochrome b-c1 complex subunit 9 [Caligus rogercresseyi]

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 35/41 (85%)

Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +YN +FK++S+F LT+AVG+   ERGFD +TDY+WE++NKG
Sbjct: 4  LYNAIFKRSSTFFLTIAVGSIFAERGFDAITDYIWENNNKG 44

Source: Caligus rogercresseyi

Species: Caligus rogercresseyi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327291470|ref|XP_003230444.1| PREDICTED: cytochrome b-c1 complex subunit 9-like [Anolis carolinensis]

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          MALG  VYNLLF++TS+F L+V VGA  FER FD+  D ++E  N+G
Sbjct: 1  MALGRQVYNLLFRRTSTFALSVVVGALVFERAFDQGADALFEHLNRG 47

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225719054|gb|ACO15373.1| Cytochrome b-c1 complex subunit 9 [Caligus clemensi]

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/43 (55%), Positives = 36/43 (83%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          + +YN +FK++S+F LT+A+G+   ERGFD LTDYVW+++NKG
Sbjct: 2  SILYNAIFKRSSTFFLTIALGSIFAERGFDALTDYVWDTNNKG 44

Source: Caligus clemensi

Species: Caligus clemensi

Genus: Caligus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432885948|ref|XP_004074830.1| PREDICTED: cytochrome b-c1 complex subunit 9-like [Oryzias latipes]

 Score = 57.4 bits (137), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          MAL  TVYNLLF++TS+F +T+ VGA  FER FD+  D V+E  N+G
Sbjct: 1  MALSKTVYNLLFRRTSTFAVTIIVGAVFFERVFDQGGDAVFEQMNRG 47

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|406700534|gb|EKD03701.1| ubiquinol-cytochrome c reductase complex 7.3 kDa protein [Trichosporon asahii var. asahii CBS 8904]

 Score = 57.0 bits (136), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 33/47 (70%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          + L   +YNLLF++ S F+ T+ +GAFAF  GFD++T   W+ HNKG
Sbjct: 3  LRLQQQIYNLLFRRNSVFVPTIFIGAFAFSIGFDQITSEFWDRHNKG 49

Source: Trichosporon asahii var. asahii CBS 8904

Species: Trichosporon asahii

Genus: Trichosporon

Order: Tremellales

Class: Tremellomycetes

Phylum: Basidiomycota

Superkingdom: Eukaryota

>gi|229366812|gb|ACQ58386.1| Cytochrome b-c1 complex subunit 9 [Anoplopoma fimbria]

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          MAL  +VYNLLF++TS+F +T+ VGA  FER FD+  D ++E  N+G
Sbjct: 1  MALAKSVYNLLFRRTSTFAITIMVGAVFFERLFDQGGDAIFEQMNRG 47

Source: Anoplopoma fimbria

Species: Anoplopoma fimbria

Genus: Anoplopoma

Family: Anoplopomatidae

Order: Scorpaeniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348532821|ref|XP_003453904.1| PREDICTED: cytochrome b-c1 complex subunit 9-like [Oreochromis niloticus]

 Score = 55.8 bits (133), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          MAL  +VYNLLF++TS+F +T+ VGA  FER FD+  D ++E  N+G
Sbjct: 1  MALAKSVYNLLFRRTSTFAVTIMVGAVLFERVFDQGGDAIFEQLNRG 47

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392874134|gb|AFM85899.1| cytochrome b-c1 complex subunit 9-like protein [Callorhinchus milii]

 Score = 55.5 bits (132), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          MA    VYN LF++TS+F LT+ VGAF FER FD+  D ++E  N+G
Sbjct: 1  MAFARRVYNSLFRRTSTFALTIIVGAFVFERAFDQGGDALFEHLNRG 47

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|350596877|ref|XP_003484330.1| PREDICTED: hypothetical protein LOC100737300 [Sus scrofa]

 Score = 55.5 bits (132), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/42 (54%), Positives = 33/42 (78%)

Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGV 48
          +Y+LLF++TS+F LT+AVGA  FER FD+  D ++E  N+GV
Sbjct: 10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGV 51

Source: Sus scrofa

Species: Sus scrofa

Genus: Sus

Family: Suidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
UNIPROTKB|J9P4I4	103	UQCR10 "Uncharacterized protei	0.356	0.456	0.510	1.2e-08
UNIPROTKB|E2RTH5	64	UQCR10 "Uncharacterized protei	0.310	0.640	0.536	2.3e-07
UNIPROTKB|Q2EN79	64	UQCR10 "Uncharacterized protei	0.310	0.640	0.536	2.3e-07
MGI|MGI:1913402	64	Uqcr10 "ubiquinol-cytochrome c	0.310	0.640	0.536	2.3e-07
UNIPROTKB|P00130	64	UQCR10 "Cytochrome b-c1 comple	0.310	0.640	0.512	6.1e-07
UNIPROTKB|F1N0I9	655	SART3 "Uncharacterized protein	0.393	0.079	0.509	7.1e-07
UNIPROTKB|F1NC51	65	UQCR10 "Uncharacterized protei	0.356	0.723	0.489	7.8e-07
ZFIN|ZDB-GENE-040724-10	952	sart3 "squamous cell carcinoma	0.409	0.056	0.468	1.1e-06
POMBASE|SPCC1682.01	67	qcr9 "ubiquinol-cytochrome-c r	0.333	0.656	0.454	1.6e-06
UNIPROTKB|F1NUL7	857	SART3 "Uncharacterized protein	0.416	0.064	0.474	1.7e-06

UNIPROTKB|J9P4I4 UQCR10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query:     7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVL 53
             +Y+LLF++TS+F LT+AVGA  FER FD+  D ++E  N+G+ H  L
Sbjct:    10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQGIQHSSL 56

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|E2RTH5 UQCR10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
             +Y+LLF++TS+F LT+AVGA  FER FD+  D ++E  N+G
Sbjct:    10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQG 50

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|Q2EN79 UQCR10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
             +Y+LLF++TS+F LT+AVGA  FER FD+  D ++E  N+G
Sbjct:    10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINQG 50

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

MGI|MGI:1913402 Uqcr10 "ubiquinol-cytochrome c reductase, complex III subunit X" [Mus musculus (taxid:10090)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 22/41 (53%), Positives = 32/41 (78%)

Query:     7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
             +Y+LLF++TS+F LT+AVGA  FER FD+  D ++E  N+G
Sbjct:    10 LYSLLFRRTSTFALTIAVGALFFERAFDQGADAIYEHINEG 50

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

UNIPROTKB|P00130 UQCR10 "Cytochrome b-c1 complex subunit 9" [Bos taurus (taxid:9913)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 21/41 (51%), Positives = 31/41 (75%)

Query:     7 VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
             +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct:    10 LYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 50

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

UNIPROTKB|F1N0I9 SART3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 108 (43.1 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
 Identities = 28/55 (50%), Positives = 36/55 (65%)

Query:    77 RGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLGK 131
             RGKGRTQLSLLPR+LQ  + AT  +  N  +TP + ++   M SN DF  +LL K
Sbjct:   604 RGKGRTQLSLLPRALQRPSAATAQA-ENGPATPAT-TEAPKM-SNADFAKLLLRK 655

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NC51 UQCR10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
 Identities = 23/47 (48%), Positives = 32/47 (68%)

Query:     1 MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
             MAL    Y+ LF++TS+F LTV +GA  FER FD+  D ++E  N+G
Sbjct:     4 MALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEG 50

GO:0005750 "mitochondrial respiratory chain complex III" evidence=IEA

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=IEA

ZFIN|ZDB-GENE-040724-10 sart3 "squamous cell carcinoma antigen recognised by T cells 3" [Danio rerio (taxid:7955)]

 Score = 107 (42.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 30/64 (46%), Positives = 37/64 (57%)

Query:    77 RGKGRTQLSLLPRSL-QVSTPATK--------PSLNNNDSTPGSDSKTSTMKSNDDFRNM 127
             RGKGRTQ+SLLPRSL + STP  K        P     D     D++T ++ SN+DF  M
Sbjct:   890 RGKGRTQISLLPRSLYRQSTPDAKAENGTISAPHATVTDGETSLDTQTKSL-SNEDFARM 948

Query:   128 LLGK 131
             LL K
Sbjct:   949 LLKK 952

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0000245 "spliceosomal complex assembly" evidence=IMP

GO:0031017 "exocrine pancreas development" evidence=IMP

GO:0030098 "lymphocyte differentiation" evidence=IMP

GO:0048538 "thymus development" evidence=IMP

POMBASE|SPCC1682.01 qcr9 "ubiquinol-cytochrome-c reductase complex subunit 9 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query:     5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGV 48
             +T+YN+ F++ SSF  T+ V AF  + GFD  TD VW+  N G+
Sbjct:     4 STIYNIFFRRNSSFYATIFVSAFFAKIGFDVFTDSVWKRANAGL 47

GO:0005739 "mitochondrion" evidence=IDA

GO:0005750 "mitochondrial respiratory chain complex III" evidence=ISO

GO:0006122 "mitochondrial electron transport, ubiquinol to cytochrome c" evidence=ISO

GO:0009060 "aerobic respiration" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=ISO

GO:0008121 "ubiquinol-cytochrome-c reductase activity" evidence=ISO

UNIPROTKB|F1NUL7 SART3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 107 (42.7 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
 Identities = 28/59 (47%), Positives = 35/59 (59%)

Query:    77 RGKGRTQLSLLPRSLQ-VSTPATKPSLNNNDSTPGSDS-KTSTMK--SNDDFRNMLLGK 131
             RGKGRTQLS++PR+LQ  S P  K       ++P + S +T   K  SN DF  MLL K
Sbjct:   799 RGKGRTQLSMMPRALQRQSNPVAKAENGMVQNSPATSSERTEEPKKMSNADFAKMLLNK 857

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006396 "RNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8R1I1	QCR9_MOUSE	No assigned EC number	0.5365	0.3106	0.6406	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam05365	55	pfam05365, UCR_UQCRX_QCR9, Ubiquinol-cytochrome C	4e-17

>gnl|CDD|147513 pfam05365, UCR_UQCRX_QCR9, Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like

 Score = 69.6 bits (171), Expect = 4e-17
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +T+YN LF++ S F+ T+  GAF FER FD  TD +W+SHNKG
Sbjct: 2  STLYNTLFRRNSVFVGTIFAGAFFFERAFDTGTDALWDSHNKG 44

The UQCRX/QCR9 protein is the 9/10 subunit of complex III, encoding a protein of about 7-kDa. Deletion of QCR9 results in the inability of cells to grow on grow on-fermentable carbon source n yeast. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF05365	55	UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase,	99.96
KOG3494|consensus	72		99.95
PF05391	21	Lsm_interact: Lsm interaction motif; InterPro: IPR	98.46
KOG0128|consensus	881		98.11

>PF05365 UCR_UQCRX_QCR9: Ubiquinol-cytochrome C reductase, UQCRX/QCR9 like; InterPro: IPR008027 The UQCRX/QCR9 protein is the 9/10 subunit of complex III, and is a protein of about 7 kDa

Probab=99.96  E-value=1.6e-30  Score=171.50  Aligned_cols=54  Identities=43%  Similarity=0.723  Sum_probs=52.9

Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhc
Q psy8971           5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLV   58 (132)
Q Consensus         5 ~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~   58 (132)
                      +++||+||||||||+++|++|||+||++||.++|++||++|||||||||||+|+
T Consensus         2 ~~~Y~~~fkRns~y~~~i~~gaf~fe~~fd~~~d~~w~~~NkGKlwkDIk~ky~   55 (55)
T PF05365_consen    2 STIYNTFFKRNSTYVLTIFAGAFFFERAFDSATDKIWDSINKGKLWKDIKHKYE   55 (55)
T ss_dssp             HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHGGGTS
T ss_pred             hHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCCcccChhhcC
Confidence            689999999999999999999999999999999999999999999999999996

Deletion of QCR9 results in the inability of Saccharomyces cerevisiae to grow on a fermentable carbon source []. The protein is part of the mitchondrial respiratory chain. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c, 0005740 mitochondrial envelope; PDB: 3CX5_T 2IBZ_I 1KYO_I 3CXH_T 1EZV_I 1P84_I 1KB9_I 3H1L_W 3L71_W 3L73_W ....

>KOG3494|consensus

Probab=99.95  E-value=1.4e-28  Score=169.09  Aligned_cols=60  Identities=32%  Similarity=0.535  Sum_probs=57.3

Q ss_pred             CchHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccCC
Q psy8971           1 MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKS   61 (132)
Q Consensus         1 Ms~~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~~   61 (132)
                      |++ ++|||+||||||+|+++||+||||||++||.++++|||.+|+||+|||||.+++.++
T Consensus        11 ma~-s~iYntffrRnSvyv~tI~asAFf~e~afDv~~~s~wer~NkGk~wkdik~r~~~~d   70 (72)
T KOG3494|consen   11 MAF-SGIYNTFFRRNSVYVTTIIASAFFFERAFDVGVHSLWERNNKGKLWKDIKVRGQRPD   70 (72)
T ss_pred             hhH-HHHHHHHHhccceeehhhHHHHHHHHHHHHHhHHHHHhhccccchHHHhHHhhcCCC
Confidence            555 799999999999999999999999999999999999999999999999999999875

>PF05391 Lsm_interact: Lsm interaction motif; InterPro: IPR008669 This short motif is found at the C terminus of Prp24 proteins and probably interacts with the Lsm proteins to promote U4/U6 formation []

Probab=98.46  E-value=1.2e-07  Score=52.18  Aligned_cols=16  Identities=63%  Similarity=0.866  Sum_probs=13.9

Q ss_pred             CCCCCChHHHHHhhcC
Q psy8971         115 TSTMKSNDDFRNMLLG  130 (132)
Q Consensus       115 ~~~~mSN~DFrkmLl~  130 (132)
                      ++++|||+|||||||+
T Consensus         6 ~~~p~SNddFrkmfl~   21 (21)
T PF05391_consen    6 TAKPKSNDDFRKMFLK   21 (21)
T ss_pred             ccCccchHHHHHHHcC
Confidence            3678999999999986

>KOG0128|consensus

Probab=98.11  E-value=1.9e-06  Score=81.26  Aligned_cols=52  Identities=33%  Similarity=0.428  Sum_probs=33.0

Q ss_pred             cCcccccCCCCccceeccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCChHHHHHhhcC
Q psy8971          69 KGTVTNDHRGKGRTQLSLLPRSLQVSTPATKPSLNNNDSTPGSDSKTSTMKSNDDFRNMLLG  130 (132)
Q Consensus        69 ~~~~~~~srGkgRtqLsllPRaL~r~t~~~~~~~~~~~~~~~~~~~~~~~mSN~DFrkmLl~  130 (132)
                      ||+.++|.|+||++||.=-|....     ++.++.     .++.++.+.+|||+|||||||+
T Consensus       830 ~~~e~~g~r~kg~~ql~~~~~~~~-----~~~~~~-----~~e~~~~a~pkSNDDFRKMFLK  881 (881)
T KOG0128|consen  830 KGEEPKGERQKGDDQLGEEQSGVE-----QKGDEK-----KEEEMPAAVPKSNDDFRKMFLK  881 (881)
T ss_pred             cccccccccccccccccccccccc-----cccchh-----cccccccccCcchHHHHHHhcC
Confidence            478889999999999921111111     111111     1133344678999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1bcc_J	62	Cytochrome Bc1 Complex From Chicken Length = 62		2e-07
1bgy_J	62	Cytochrome Bc1 Complex From Bovine Length = 62		3e-07
1qcr_J	59	Crystal Structure Of Bovine Mitochondrial Cytochrom		8e-07
3cwb_J	61	Chicken Cytochrome Bc1 Complex Inhibited By An Iodi		2e-06

>pdb|1BCC|J Chain J, Cytochrome Bc1 Complex From Chicken Length = 62

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 9  LYSLLFRRTSTFALTIVVGALLFERAFDQGADAIYEHINEG 49

>pdb|1BGY|J Chain J, Cytochrome Bc1 Complex From Bovine Length = 62

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 9  LYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 49

>pdb|1QCR|J Chain J, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex, Alpha Carbon Atoms Only Length = 59

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 30/41 (73%)
Query: 7  VYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +Y+LLF++TS+F LT+ VGA  FER FD   D ++E  N+G
Sbjct: 6  LYSLLFRRTSTFALTIVVGALFFERAFDNGADAIYEHINEG 46

>pdb|3CWB|J Chain J, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated Analogue Of The Polyketide Crocacin-d Length = 61

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 2  ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          AL    Y+ LF++TS+F LTV +GA  FER FD+  D ++E  N+G
Sbjct: 1  ALLRQAYSALFRRTSTFALTVVLGAVLFERAFDQGADAIFEHLNEG 46

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1pp9_J	62	Ubiquinol-cytochrome C reductase complex 7.2 kDa;	3e-19
3cx5_I	65	Cytochrome B-C1 complex subunit 9; complex III, el	4e-18

>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ... Length = 62

 Score = 74.5 bits (183), Expect = 3e-19
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 1  MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
            L   +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 3  PTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 49

>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I* Length = 65

 Score = 71.8 bits (176), Expect = 4e-18
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +++Y   FK+ + F+ T+  GAF F+  FD      +E+HNKG
Sbjct: 3  SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 45

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1pp9_J	62	Ubiquinol-cytochrome C reductase complex 7.2 kDa;	99.97
3cx5_I	65	Cytochrome B-C1 complex subunit 9; complex III, el	99.96

>1pp9_J Ubiquinol-cytochrome C reductase complex 7.2 kDa; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.14.1 PDB: 1bgy_J* 1be3_J* 1l0n_J* 1ntk_J* 1ntm_J* 1ntz_J* 1nu1_J* 1l0l_J* 1ppj_J* 1sqb_J* 1sqp_J* 1sqq_J* 1sqv_J* 1sqx_J* 2a06_J* 2fyu_J* 2ybb_J* 1bcc_J* 2bcc_J* 3bcc_J* ...

Probab=99.97  E-value=1.7e-32  Score=183.89  Aligned_cols=60  Identities=38%  Similarity=0.593  Sum_probs=57.7

Q ss_pred             CchHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccC
Q psy8971           1 MALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQK   60 (132)
Q Consensus         1 Ms~~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~   60 (132)
                      |++++++||+||||||||+++||+|||+||++||.++|+|||++|||||||||+|+|+++
T Consensus         3 ~~~~~~~Y~~~frRnS~y~~~i~~gaf~fe~~~d~~~d~iw~~~NkGKlwkDIk~ky~~~   62 (62)
T 1pp9_J            3 PTLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENK   62 (62)
T ss_dssp             CCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHGGGTC-C
T ss_pred             hhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCCcccChHhhccC
Confidence            889999999999999999999999999999999999999999999999999999999863

>3cx5_I Cytochrome B-C1 complex subunit 9; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.14.1 PDB: 3cxh_I* 2ibz_I* 1kyo_I* 1ezv_I* 1kb9_I* 1p84_I*

Probab=99.96  E-value=6.1e-31  Score=177.71  Aligned_cols=58  Identities=29%  Similarity=0.453  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccCC
Q psy8971           4 GNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQKS   61 (132)
Q Consensus         4 ~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~~   61 (132)
                      ++++||+||||||||+++||+|||+||++||.++|+|||++|||||||||+++|++++
T Consensus         2 ~~~iY~~~fkRnSty~~~I~~gaf~fE~~fd~~~d~iw~~~NkGKlwkDIk~ky~~~~   59 (65)
T 3cx5_I            2 FSSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIAAGD   59 (65)
T ss_dssp             CHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHCCC--
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHhccCCCCcccChhhhcCcc
Confidence            4789999999999999999999999999999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1ppjw_	62	f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein)	3e-19
d3cx5i1	55	f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa prote	4e-18
d1ppjj_	33	f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein)	3e-05

>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 62

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (181), Expect = 3e-19
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 2  ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
           L   +Y+LLF++TS+F LT+ VGA  FER FD+  D ++E  N+G
Sbjct: 4  TLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEG 49

>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 55

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.5 bits (173), Expect = 4e-18
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 5  NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKG 47
          +++Y   FK+ + F+ T+  GAF F+  FD      +E+HNKG
Sbjct: 1  SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKG 43

>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]} Length = 33

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.7 bits (85), Expect = 3e-05
 Identities = 9/19 (47%), Positives = 13/19 (68%)

Query: 29 FERGFDKLTDYVWESHNKG 47
          FER FD+  D ++E  N+G
Sbjct: 2  FERAFDQGADAIYEHINEG 20

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1ppjw_	62	Subunit X (non-heme 7 kDa protein) of cytochrome b	99.98
d3cx5i1	55	Subunit X (non-heme 7 kDa protein) of cytochrome b	99.97
d1ppjj_	33	Subunit X (non-heme 7 kDa protein) of cytochrome b	99.75

>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=5.2e-34  Score=189.80  Aligned_cols=59  Identities=39%  Similarity=0.616  Sum_probs=56.7

Q ss_pred             chHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhccC
Q psy8971           2 ALGNTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLVQK   60 (132)
Q Consensus         2 s~~~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~   60 (132)
                      |+++++||+||||||||+++|++|||+||++||.++|+|||++|+|||||||||||+++
T Consensus         4 sl~~~lYn~lfrRnStf~~tI~~gAf~fE~~fD~~~d~iwe~~NkGKlWKDIk~ky~~k   62 (62)
T d1ppjw_           4 TLTARLYSLLFRRTSTFALTIVVGALFFERAFDQGADAIYEHINEGKLWKHIKHKYENK   62 (62)
T ss_dssp             CHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHGGGTC-C
T ss_pred             cHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHhccC
Confidence            68999999999999999999999999999999999999999999999999999999975

>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-32  Score=177.82  Aligned_cols=54  Identities=31%  Similarity=0.523  Sum_probs=52.6

Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHhhhhhhhhhHHHhhcCCCCCCccccchhc
Q psy8971           5 NTVYNLLFKKTSSFMLTVAVGAFAFERGFDKLTDYVWESHNKGVNHPVLGAVLV   58 (132)
Q Consensus         5 ~~~Yn~~frRnStf~~tI~~gAf~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~   58 (132)
                      +++||+||||||||+++||+|||+||++||.++|+|||++|||||||||||||.
T Consensus         1 stiY~~lfrRnSv~~~tI~~gAf~fe~~fD~~~d~~we~~NkGKlWkDIk~k~~   54 (55)
T d3cx5i1           1 SSLYKTFFKRNAVFVGTIFAGAFVFQTVFDTAITSWYENHNKGKLWKDVKARIA   54 (55)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHCC
T ss_pred             ChHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHhhc
Confidence            589999999999999999999999999999999999999999999999999985

>d1ppjj_ f.23.14.1 (J:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
family: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
domain: Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.75  E-value=6.3e-20  Score=107.99  Aligned_cols=33  Identities=30%  Similarity=0.390  Sum_probs=30.9

Q ss_pred             HHhhhhhhhhhHHHhhcCCCCCCccccchhccC
Q psy8971          28 AFERGFDKLTDYVWESHNKGVNHPVLGAVLVQK   60 (132)
Q Consensus        28 ~fE~~fD~~~d~iwd~~NkGKlWkDIk~k~~~~   60 (132)
                      |||++||.++|+|||++|+|||||||||+|+++
T Consensus         1 fFErafD~~~d~i~d~~NkGklWKdIkhkYe~k   33 (33)
T d1ppjj_           1 FFERAFDQGADAIYEHINEGKLWKHIKHKYENK   33 (33)
T ss_dssp             CCHHHHHHHHHHHHHHHTTTTSHHHHGGGTC-C
T ss_pred             ChHHHHhhhHHHHHHHhcccchHHHHHHHhccC
Confidence            699999999999999999999999999999974