Psyllid ID: psy9172

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MNSASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFRSEATEFS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccccccccccccccccHHHEEHHHccccEEHHHHHHHHHccccccccccccccHHHHccccccccccc
Coil and Loop (DISEMBL)
MNSASAQAALQAAQALtgqtdtqggpnTVLRVIIEHMLYPITLdvlyqfdnykfghafstslamprdelagfrseatefs
Flexible Loop (DISEMBL)
MNSASAQAALQAAQaltgqtdtqggPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFRSEATEFS
Low Complexity Region (SEG)
MNsasaqaalqaaqalTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFRSEATEFS
Disordered region (IsUnstruct)
**************************NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL******************
Disordered Region (DISOPRED)
*****************************LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF*S******
Disordered Region (DISEMBL)
********************DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELA**********
Disordered Region (DISPRO)
*************************PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFRSEATEFS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
322802943	114	hypothetical protein SINV_16070 [Solenop	0.575	0.403	0.586	3e-09
321470924	540	hypothetical protein DAPPUDRAFT_302853 [	0.4	0.059	0.812	4e-09
242023546	513	Polypyrimidine tract-binding protein, pu	0.387	0.060	0.838	1e-08
328712476	581	PREDICTED: polypyrimidine tract-binding	0.4	0.055	0.75	4e-08
328712478	613	PREDICTED: polypyrimidine tract-binding	0.4	0.052	0.75	5e-08
328712480	632	PREDICTED: polypyrimidine tract-binding	0.4	0.050	0.75	5e-08
307694571	181	hephaestus [Biston betularia]	0.487	0.215	0.725	7e-08
345496639	587	PREDICTED: polypyrimidine tract-binding	0.562	0.076	0.604	8e-08
357623431	621	putative polypyrimidine tract binding pr	0.425	0.054	0.8	1e-07
328788959	449	PREDICTED: polypyrimidine tract-binding	0.612	0.109	0.56	2e-07

>gi|322802943|gb|EFZ23084.1| hypothetical protein SINV_16070 [Solenopsis invicta]

 Score = 65.9 bits (159), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/46 (58%), Positives = 37/46 (80%)

Query: 3   SASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ 48
           +++ Q A+     ++G  +TQGGPNTVLRVI+EH+LYPITLD+LYQ
Sbjct: 68  NSNNQVAIAGQNQVSGAGETQGGPNTVLRVIVEHLLYPITLDILYQ 113

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470924|gb|EFX81898.1| hypothetical protein DAPPUDRAFT_302853 [Daphnia pulex]

 Score = 65.5 bits (158), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/32 (81%), Positives = 31/32 (96%)

Query: 18  GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQF 49
           GQT+TQGGPNTVLRVI+EHM+YP+TLDVL+Q 
Sbjct: 156 GQTETQGGPNTVLRVIVEHMVYPVTLDVLFQI 187

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023546|ref|XP_002432193.1| Polypyrimidine tract-binding protein, putative [Pediculus humanus corporis] gi|212517590|gb|EEB19455.1| Polypyrimidine tract-binding protein, putative [Pediculus humanus corporis]

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/31 (83%), Positives = 29/31 (93%)

Query: 18  GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ 48
           G  DTQGGPNTVLRVIIEHM+YP+TLDVLY+
Sbjct: 127 GSIDTQGGPNTVLRVIIEHMVYPVTLDVLYK 157

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712476|ref|XP_003244820.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 30/32 (93%)

Query: 18  GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQF 49
           GQ+D QGGPNTVLRVI+EHM++PI+LDVLY+ 
Sbjct: 152 GQSDVQGGPNTVLRVIVEHMVFPISLDVLYEI 183

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712478|ref|XP_001947870.2| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 62.0 bits (149), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 30/32 (93%)

Query: 18  GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQF 49
           GQ+D QGGPNTVLRVI+EHM++PI+LDVLY+ 
Sbjct: 184 GQSDVQGGPNTVLRVIVEHMVFPISLDVLYEI 215

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712480|ref|XP_003244821.1| PREDICTED: polypyrimidine tract-binding protein 1-like isoform 3 [Acyrthosiphon pisum]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 30/32 (93%)

Query: 18  GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQF 49
           GQ+D QGGPNTVLRVI+EHM++PI+LDVLY+ 
Sbjct: 184 GQSDVQGGPNTVLRVIVEHMVFPISLDVLYEI 215

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307694571|gb|ADN84938.1| hephaestus [Biston betularia]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/40 (72%), Positives = 30/40 (75%), Gaps = 1/40 (2%)

Query: 14  QALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
           Q   G T+ QGGPNTVLRVIIEHMLYPI LDVLY  F  Y
Sbjct: 129 QPANGGTEIQGGPNTVLRVIIEHMLYPIVLDVLYSIFQRY 168

Source: Biston betularia

Species: Biston betularia

Genus: Biston

Family: Geometridae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496639|ref|XP_001603240.2| PREDICTED: polypyrimidine tract-binding protein 1-like [Nasonia vitripennis]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/48 (60%), Positives = 35/48 (72%), Gaps = 3/48 (6%)

Query: 2   NSASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQF 49
           N+ S QAA    Q     ++TQGGPNTVLRVI+EH +YPI+LDVLYQ 
Sbjct: 174 NNTSVQAA---GQGQVQGSETQGGPNTVLRVIVEHQIYPISLDVLYQI 218

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357623431|gb|EHJ74585.1| putative polypyrimidine tract binding protein [Danaus plexippus]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/35 (80%), Positives = 28/35 (80%), Gaps = 1/35 (2%)

Query: 19  QTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
           Q D QGGPNTVLRVIIEHMLYPI LDVLY  F  Y
Sbjct: 234 QCDLQGGPNTVLRVIIEHMLYPIVLDVLYSIFQRY 268

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788959|ref|XP_625087.3| PREDICTED: polypyrimidine tract-binding protein 2 [Apis mellifera]

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 37/50 (74%), Gaps = 1/50 (2%)

Query: 1  MNSASAQAALQAA-QALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQF 49
          +++++ Q AL    Q    Q +TQGGPNTVLRVI+E M+YPI+LDVLYQ 
Sbjct: 6  LDNSNNQVALPGQNQVAQTQAETQGGPNTVLRVIVEQMVYPISLDVLYQI 55

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0011224	789	heph "hephaestus" [Drosophila	0.437	0.044	0.583	3.4e-06
ZFIN|ZDB-GENE-030131-9796	586	ptbp1b "polypyrimidine tract b	0.462	0.063	0.55	0.00015
WB|WBGene00004207	615	ptb-1 [Caenorhabditis elegans	0.425	0.055	0.571	0.00016
UNIPROTKB|K7ES59	209	PTBP1 "Polypyrimidine tract-bi	0.375	0.143	0.548	0.00072
UNIPROTKB|K7EKJ7	236	PTBP1 "Polypyrimidine tract-bi	0.375	0.127	0.548	0.00094
UNIPROTKB|C9JJZ7	149	HNRPLL "Heterogeneous nuclear	0.425	0.228	0.529	0.00097

FB|FBgn0011224 heph "hephaestus" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 21/36 (58%), Positives = 29/36 (80%)

Query:    18 GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
             G T+  GGPNTVLRVI+E ++YP++LD+L+Q F  Y
Sbjct:   394 GNTNAAGGPNTVLRVIVESLMYPVSLDILHQIFQRY 429

GO:0007286 "spermatid development" evidence=IMP

GO:0008187 "poly-pyrimidine tract binding" evidence=ISS;NAS

GO:0003729 "mRNA binding" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

GO:0007219 "Notch signaling pathway" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IMP

GO:0008587 "imaginal disc-derived wing margin morphogenesis" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0007319 "negative regulation of oskar mRNA translation" evidence=IMP

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IMP

GO:0003730 "mRNA 3'-UTR binding" evidence=IDA

GO:0000900 "translation repressor activity, nucleic acid binding" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:2001020 "regulation of response to DNA damage stimulus" evidence=IGI

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0007291 "sperm individualization" evidence=IMP

ZFIN|ZDB-GENE-030131-9796 ptbp1b "polypyrimidine tract binding protein 1b" [Danio rerio (taxid:7955)]

 Score = 102 (41.0 bits), Expect = 0.00015, P = 0.00015
 Identities = 22/40 (55%), Positives = 29/40 (72%)

Query:    18 GQTDTQG--GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
             G  D  G  GP+ VLRVI+E++ YP+TLDVL+Q  + KFG
Sbjct:   199 GGVDPSGMTGPSPVLRVIVENLFYPVTLDVLHQIFS-KFG 237

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

WB|WBGene00004207 ptb-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 102 (41.0 bits), Expect = 0.00016, P = 0.00016
 Identities = 20/35 (57%), Positives = 27/35 (77%)

Query:    19 QTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
             +  TQ  PN+VLR IIE+M++P++LDVLYQ F  Y
Sbjct:   221 EVGTQQQPNSVLRTIIENMMFPVSLDVLYQLFTRY 255

GO:0003723 "RNA binding" evidence=IEA;ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

UNIPROTKB|K7ES59 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 0.00072, P = 0.00072
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query:    25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
             G + VLR+I+E++ YP+TLDVL+Q  + KFG
Sbjct:   149 GQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 178

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|K7EKJ7 PTBP1 "Polypyrimidine tract-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 89 (36.4 bits), Expect = 0.00094, P = 0.00094
 Identities = 17/31 (54%), Positives = 25/31 (80%)

Query:    25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
             G + VLR+I+E++ YP+TLDVL+Q  + KFG
Sbjct:   176 GQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 205

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|C9JJZ7 HNRPLL "Heterogeneous nuclear ribonucleoprotein L-like" [Homo sapiens (taxid:9606)]

 Score = 84 (34.6 bits), Expect = 0.00097, P = 0.00097
 Identities = 18/34 (52%), Positives = 22/34 (64%)

Query:    18 GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDN 51
             G TD   G N VL + I++ LYPIT+DVLY   N
Sbjct:    96 GNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCN 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       80        66   0.00091  102 3  11 22  0.42    28
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  435 (46 KB)
  Total size of DFA:  78 KB (2064 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.86u 0.10s 6.96t   Elapsed:  00:00:01
  Total cpu time:  6.86u 0.10s 6.96t   Elapsed:  00:00:01
  Start:  Thu Aug 15 17:03:53 2013   End:  Thu Aug 15 17:03:54 2013

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
TIGR01649	481	TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus spl	2e-09
cd12693	96	cd12693, RRM2_PTBP1_like, RNA recognition motif 2	5e-09
cd12422	85	cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition m	2e-06
cd12692	88	cd12692, RRM2_PTBPH3, RNA recognition motif 2 in p	3e-05
cd12783	101	cd12783, RRM2_PTBP2, RNA recognition motif 2 in ve	2e-04
cd12784	103	cd12784, RRM2_ROD1, RNA recognition motif 2 in ver	4e-04
cd12782	100	cd12782, RRM2_PTBP1, RNA recognition motif 2 in ve	4e-04

>gnl|CDD|233508 TIGR01649, hnRNP-L_PTB, hnRNP-L/PTB/hephaestus splicing factor family

 Score = 51.4 bits (123), Expect = 2e-09
 Identities = 20/33 (60%), Positives = 23/33 (69%)

Query: 19  QTDTQGGPNTVLRVIIEHMLYPITLDVLYQFDN 51
                 GPN VLRVI+E+ +YPITLDVLYQ  N
Sbjct: 86  SDFDSAGPNKVLRVIVENPMYPITLDVLYQIFN 118

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067). Length = 481

>gnl|CDD|241137 cd12693, RRM2_PTBP1_like, RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins

 Score = 47.8 bits (114), Expect = 5e-09
 Identities = 17/22 (77%), Positives = 21/22 (95%)

Query: 27 NTVLRVIIEHMLYPITLDVLYQ 48
          NTVLRVI+E+M YP+TLDVL+Q
Sbjct: 1  NTVLRVIVENMTYPVTLDVLHQ 22

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), and similar proteins found in Metazoa. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 also contains four RRMs. ROD1 coding protein Rod1 is a mammalian PTB homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It may play a role controlling differentiation in mammals. All members in this family contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 96

>gnl|CDD|240868 cd12422, RRM2_PTBP1_hnRNPL_like, RNA recognition motif in polypyrimidine tract-binding protein 1 (PTB or hnRNP I), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), and similar proteins

 Score = 41.0 bits (97), Expect = 2e-06
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 1/25 (4%)

Query: 29 VLRVIIEHMLYPITLDVLYQ-FDNY 52
          VL V I ++LYP+T+DVL+Q F  Y
Sbjct: 1  VLLVTISNLLYPVTVDVLHQVFSPY 25

This subfamily corresponds to the RRM2 of polypyrimidine tract-binding protein 1 (PTB or hnRNP I), polypyrimidine tract-binding protein 2 (PTBP2 or nPTB), regulator of differentiation 1 (Rod1), heterogeneous nuclear ribonucleoprotein L (hnRNP-L), heterogeneous nuclear ribonucleoprotein L-like (hnRNP-LL), polypyrimidine tract-binding protein homolog 3 (PTBPH3), polypyrimidine tract-binding protein homolog 1 and 2 (PTBPH1 and PTBPH2), and similar proteins, and RRM3 of PTBPH1 and PTBPH2. PTB is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTBP2 is highly homologous to PTB and is perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. Rod1 is a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. hnRNP-L is a higher eukaryotic specific subunit of human KMT3a (also known as HYPB or hSet2) complex required for histone H3 Lys-36 trimethylation activity. It plays both, nuclear and cytoplasmic, roles in mRNA export of intronless genes, IRES-mediated translation, mRNA stability, and splicing. hnRNP-LL protein plays a critical and unique role in the signal-induced regulation of CD45 and acts as a global regulator of alternative splicing in activated T cells. This family also includes polypyrimidine tract binding protein homolog 3 (PTBPH3) found in plant. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to other family members, all of which contain four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). Although their biological roles remain unclear, both PTBPH1 and PTBPH2 show significant sequence similarity to PTB. However, in contrast to PTB, they have three RRMs. . Length = 85

>gnl|CDD|241136 cd12692, RRM2_PTBPH3, RNA recognition motif 2 in plant polypyrimidine tract-binding protein homolog 3 (PTBPH3)

 Score = 38.4 bits (89), Expect = 3e-05
 Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 1/30 (3%)

Query: 26 PNTVLRVIIEHMLYPITLDVLYQ-FDNYKF 54
          PN +L V I H LYPIT+DVL+Q F  + F
Sbjct: 1  PNRILLVTIHHPLYPITVDVLHQVFSPHGF 30

This subfamily corresponds to the RRM2 of PTBPH3. Although its biological roles remain unclear, PTBPH3 shows significant sequence similarity to polypyrimidine tract binding protein (PTB) that is an important negative regulator of alternative splicing in mammalian cells and also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. Like PTB, PTBPH3 contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 88

>gnl|CDD|241227 cd12783, RRM2_PTBP2, RNA recognition motif 2 in vertebrate polypyrimidine tract-binding protein 2 (PTBP2)

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 17/27 (62%), Positives = 23/27 (85%), Gaps = 1/27 (3%)

Query: 29 VLRVIIEHMLYPITLDVLYQFDNYKFG 55
          VLR+II++M YP+TLDVL+Q  + KFG
Sbjct: 3  VLRIIIDNMYYPVTLDVLHQIFS-KFG 28

This subgroup corresponds to the RRM2 of PTBP2, also known as neural polypyrimidine tract-binding protein or neurally-enriched homolog of PTB (nPTB), highly homologous to polypyrimidine tract binding protein (PTB) and perhaps specific to the vertebrates. Unlike PTB, PTBP2 is enriched in the brain and in some neural cell lines. It binds more stably to the downstream control sequence (DCS) RNA than PTB does but is a weaker repressor of splicing in vitro. PTBP2 also greatly enhances the binding of two other proteins, heterogeneous nuclear ribonucleoprotein (hnRNP) H and KH-type splicing-regulatory protein (KSRP), to the DCS RNA. The binding properties of PTBP2 and its reduced inhibitory activity on splicing imply roles in controlling the assembly of other splicing-regulatory proteins. PTBP2 contains four RNA recognition motifs (RRMs), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). . Length = 101

>gnl|CDD|241228 cd12784, RRM2_ROD1, RNA recognition motif 2 in vertebrate regulator of differentiation 1 (Rod1)

 Score = 35.7 bits (82), Expect = 4e-04
 Identities = 16/31 (51%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
          G + VLR+I+E++ YP+TL+VL+Q  + KFG
Sbjct: 1  GQSPVLRIIVENLFYPVTLEVLHQIFS-KFG 30

This subgroup corresponds to the RRM2 of ROD1 coding protein Rod1, a mammalian polypyrimidine tract binding protein (PTB) homolog of a regulator of differentiation in the fission yeast Schizosaccharomyces pombe, where the nrd1 gene encodes an RNA binding protein and negatively regulates the onset of differentiation. ROD1 is predominantly expressed in hematopoietic cells or organs. It might play a role controlling differentiation in mammals. Rod1 contains four repeats of RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain) and does have RNA binding activities. . Length = 103

>gnl|CDD|241226 cd12782, RRM2_PTBP1, RNA recognition motif 2 in vertebrate polypyrimidine tract-binding protein 1 (PTB)

 Score = 35.5 bits (81), Expect = 4e-04
 Identities = 16/27 (59%), Positives = 23/27 (85%), Gaps = 1/27 (3%)

Query: 29 VLRVIIEHMLYPITLDVLYQFDNYKFG 55
          VLR+I+E++ YP+TLDVL+Q  + KFG
Sbjct: 4  VLRIIVENLFYPVTLDVLHQIFS-KFG 29

This subgroup corresponds to the RRM2 of PTB, also known as 58 kDa RNA-binding protein PPTB-1 or heterogeneous nuclear ribonucleoprotein I (hnRNP I), an important negative regulator of alternative splicing in mammalian cells. PTB also functions at several other aspects of mRNA metabolism, including mRNA localization, stabilization, polyadenylation, and translation. PTB contains four RNA recognition motifs (RRM), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain). RRM1 and RRM2 are independent from each other and separated by flexible linkers. By contrast, there is an unusual and conserved interdomain interaction between RRM3 and RRM4. It is widely held that only RRMs 3 and 4 are involved in RNA binding and RRM2 mediates PTB homodimer formation. However, new evidence shows that the RRMs 1 and 2 also contribute substantially to RNA binding. Moreover, PTB may not always dimerize to repress splicing. It is a monomer in solution. . Length = 100

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	80
KOG1190|consensus	492		99.76
KOG1456|consensus	494		98.86
TIGR01649	481	hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor	97.64
KOG1190|consensus	492		96.58
PF00076	70	RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or	90.88
TIGR01661	352	ELAV_HUD_SF ELAV/HuD family splicing factor. These	88.69
PLN03134	144	glycine-rich RNA-binding protein 4; Provisional	86.77
TIGR01628	562	PABP-1234 polyadenylate binding protein, human typ	84.11
smart00362	72	RRM_2 RNA recognition motif.	82.88
KOG4207|consensus	256		81.16
PF13893	56	RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or	80.79

>KOG1190|consensus

Probab=99.76  E-value=4e-19  Score=144.65  Aligned_cols=69  Identities=39%  Similarity=0.621  Sum_probs=61.3

Q ss_pred             ChHHHHHHHHHhhhhhcC----------CCCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccC
Q psy9172           2 NSASAQAALQAAQALTGQ----------TDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAG   71 (80)
Q Consensus         2 n~~~aqaALqa~n~v~~~----------~~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~   71 (80)
                      ||.+++++++++++++..          ...+++||+|||+|||||+||||+|||||||| +||+|+   ++++|.|.+|
T Consensus       113 ~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS-~fG~Vl---KIiTF~Knn~  188 (492)
T KOG1190|consen  113 NQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFS-KFGFVL---KIITFTKNNG  188 (492)
T ss_pred             hhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHh-hcceeE---EEEEEecccc
Confidence            567999999999876553          13677999999999999999999999999999 999999   8999999999


Q ss_pred             ccc
Q psy9172          72 FRS   74 (80)
Q Consensus        72 ~~~   74 (80)
                      |.-
T Consensus       189 FQA  191 (492)
T KOG1190|consen  189 FQA  191 (492)
T ss_pred             hhh
Confidence            963

>KOG1456|consensus

Probab=98.86  E-value=1.9e-09  Score=88.31  Aligned_cols=42  Identities=38%  Similarity=0.556  Sum_probs=38.6

Q ss_pred             CCCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          20 TDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        20 ~~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +.....||+||+++|.|++||||+||||+|+. +.|.|+|-.+
T Consensus       113 g~es~~pN~VLl~TIlNp~YpItvDVly~Icn-p~GkVlRIvI  154 (494)
T KOG1456|consen  113 GDESATPNKVLLFTILNPQYPITVDVLYTICN-PQGKVLRIVI  154 (494)
T ss_pred             CCCCCCCCeEEEEEeecCccccchhhhhhhcC-CCCceEEEEE
Confidence            56778999999999999999999999999999 9999998654

>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family

Probab=97.64  E-value=5.5e-05  Score=60.00  Aligned_cols=38  Identities=55%  Similarity=0.928  Sum_probs=34.7

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .+++.+|+|.|.|+-|+||.|.|+++|+ +||.|.|-++
T Consensus        91 ~~~~~~~~v~v~nl~~~vt~~~L~~~F~-~~G~V~~v~i  128 (481)
T TIGR01649        91 AGPNKVLRVIVENPMYPITLDVLYQIFN-PYGKVLRIVT  128 (481)
T ss_pred             CCCCceEEEEEcCCCCCCCHHHHHHHHh-ccCCEEEEEE
Confidence            3578999999999999999999999999 9999987655

Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).

>KOG1190|consensus

Probab=96.58  E-value=0.002  Score=53.65  Aligned_cols=35  Identities=17%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      ++++..++++-|-||.|+||++|+ .||.|+|=|+-
T Consensus       297 n~vllvsnln~~~VT~d~LftlFg-vYGdVqRVkil  331 (492)
T KOG1190|consen  297 NVVLLVSNLNEEAVTPDVLFTLFG-VYGDVQRVKIL  331 (492)
T ss_pred             ceEEEEecCchhccchhHHHHHHh-hhcceEEEEee
Confidence            455556677779999999999999 99999886653

>PF00076 RRM_1: RNA recognition motif

Probab=90.88  E-value=0.29  Score=27.35  Aligned_cols=32  Identities=19%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      |.|.|+-.-+|-+-|.+.|+ +||.|..-.+..
T Consensus         1 l~v~nlp~~~t~~~l~~~f~-~~g~i~~~~~~~   32 (70)
T PF00076_consen    1 LYVGNLPPDVTEEELRDFFS-QFGKIESIKVMR   32 (70)
T ss_dssp             EEEESETTTSSHHHHHHHHH-TTSTEEEEEEEE
T ss_pred             cEEcCCCCcCCHHHHHHHHH-Hhhhcccccccc
Confidence            56889988999999999999 999996555444

(a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....

>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor

Probab=88.69  E-value=0.48  Score=34.90  Aligned_cols=40  Identities=15%  Similarity=0.294  Sum_probs=31.6

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceeec--cccccCc
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP--RDELAGF   72 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~--~~~~~~~   72 (80)
                      |.|.|+-+.+|-+-|..+|+ +||.|.+-++..-  ...+-||
T Consensus       272 lfV~NL~~~~~e~~L~~~F~-~fG~v~~v~i~~d~~t~~skG~  313 (352)
T TIGR01661       272 IFVYNLSPDTDETVLWQLFG-PFGAVQNVKIIRDLTTNQCKGY  313 (352)
T ss_pred             EEEeCCCCCCCHHHHHHHHH-hCCCeEEEEEeEcCCCCCccce
Confidence            77999999999999999999 9999987655432  2345554

These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).

>PLN03134 glycine-rich RNA-binding protein 4; Provisional

Probab=86.77  E-value=0.92  Score=31.20  Aligned_cols=34  Identities=12%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      +|-|.|+-+-+|-+-|-.+|+ +||.|.+-.+.+.
T Consensus        36 ~lfVgnL~~~~te~~L~~~F~-~~G~I~~v~i~~d   69 (144)
T PLN03134         36 KLFIGGLSWGTDDASLRDAFA-HFGDVVDAKVIVD   69 (144)
T ss_pred             EEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEEec
Confidence            577889999999999999999 9999987665543

>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family

Probab=84.11  E-value=1.5  Score=35.13  Aligned_cols=62  Identities=19%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHhhhhhcCC----------CCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172           3 SASAQAALQAAQALTGQT----------DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus         3 ~~~aqaALqa~n~v~~~~----------~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      ...|+.||+..+-....+          +.....+..-.|.|.|+-+-+|-+-|+.+|+ +||.|..-++...
T Consensus        52 ~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~-~~G~i~~~~i~~~  123 (562)
T TIGR01628        52 PADAERALETMNFKRLGGKPIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFS-KFGNILSCKVATD  123 (562)
T ss_pred             HHHHHHHHHHhCCCEECCeeEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHH-hcCCcceeEeeec
Confidence            347788888776321110          0011112233478999999999999999999 9999987665543

There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.

>smart00362 RRM_2 RNA recognition motif

Probab=82.88  E-value=1.6  Score=23.35  Aligned_cols=28  Identities=21%  Similarity=0.249  Sum_probs=24.0

Q ss_pred             EEEecccceeehhhhhhhhcccccceeee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      |.|.|+-..++-+-|...|+ +||.|.+-
T Consensus         2 v~i~~l~~~~~~~~l~~~~~-~~g~v~~~   29 (72)
T smart00362        2 LFVGNLPPDVTEEDLKELFS-KFGPIESV   29 (72)
T ss_pred             EEEcCCCCcCCHHHHHHHHH-hcCCEEEE
Confidence            67888877889999999999 99998653

>KOG4207|consensus

Probab=81.16  E-value=1.1  Score=35.06  Aligned_cols=38  Identities=21%  Similarity=0.433  Sum_probs=33.0

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      -+.-+-|+|+.|--|-|-|.-+|. |||.|  -.+-+|+|.
T Consensus        12 gm~SLkVdNLTyRTspd~LrrvFe-kYG~v--gDVyIPrdr   49 (256)
T KOG4207|consen   12 GMTSLKVDNLTYRTSPDDLRRVFE-KYGRV--GDVYIPRDR   49 (256)
T ss_pred             cceeEEecceeccCCHHHHHHHHH-HhCcc--cceeccccc
Confidence            356788999999999999999999 99999  467788875

>PF13893 RRM_5: RNA recognition motif

Probab=80.79  E-value=0.96  Score=25.38  Aligned_cols=13  Identities=38%  Similarity=0.662  Sum_probs=10.2

Q ss_pred             hhhhhcccccceee
Q psy9172          46 LYQFDNYKFGHAFS   59 (80)
Q Consensus        46 LhqiFs~~fG~Vlr   59 (80)
                      |+..|+ +||.|.+
T Consensus         1 L~~~f~-~fG~V~~   13 (56)
T PF13893_consen    1 LYKLFS-KFGEVKK   13 (56)
T ss_dssp             HHHHHT-TTS-EEE
T ss_pred             ChHHhC-CcccEEE
Confidence            688999 9999953

(a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
1sjr_A	164	Nmr Structure Of Rrm2 From Human Polypyrimidine Tra		8e-04

>pdb|1SJR|A Chain A, Nmr Structure Of Rrm2 From Human Polypyrimidine Tract Binding Protein Isoform 1 (Ptb1) Length = 164

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/32 (53%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFG 55
           G + VLR+I+E++ YP+TLDVL+Q  + KFG
Sbjct: 41 AGQSPVLRIIVENLFYPVTLDVLHQIFS-KFG 71

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	1e-07
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	1e-06
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	2e-06

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A Length = 130

 Score = 44.2 bits (104), Expect = 1e-07
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 5  SAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
          S   AL A+ A         G + VLR+I+E++ YP+TLDVL+Q F  +
Sbjct: 4  SGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKF 52

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus} Length = 124

 Score = 42.0 bits (98), Expect = 1e-06
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 18 GQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
          G TD   G N VL + I++ LYPIT+DVLY   +  
Sbjct: 14 GNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPV 49

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A Length = 164

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 2  NSASAQAALQAAQALTGQTDTQGGPNTVLRVIIEHMLYPITLDVLYQ-FDNY 52
          +  S   AL A+ A         G + VLR+I+E++ YP+TLDVL+Q F  +
Sbjct: 19 SVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFSKF 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
1sjr_A	164	Polypyrimidine tract-binding protein 1; extended b	98.89
3zzy_A	130	Polypyrimidine tract-binding protein 1; protein bi	98.86
2e5i_A	124	Heterogeneous nuclear ribonucleoprotein L-like; RR	98.59
2pe8_A	105	Splicing factor 45; RRM, protein binding; 2.00A {H	95.88
3v4m_A	105	Splicing factor U2AF 65 kDa subunit; canonical RNA	95.76
3s8s_A	110	Histone-lysine N-methyltransferase SETD1A; chromat	95.28
3r27_A	100	HnRNP L, heterogeneous nuclear ribonucleoprotein L	95.25
2cq3_A	103	RNA-binding protein 9; RRM domain, structural geno	95.04
2cqi_A	103	Nucleolysin TIAR; RNA recognition motif, RRM, RNA	94.86
2krb_A	81	Eukaryotic translation initiation factor 3 subunit	94.72
2nlw_A	105	Eukaryotic translation initiation factor 3 subunit	94.69
2cq2_A	114	Hypothetical protein LOC91801; RRM domain, structu	94.65
2dgv_A	92	HnRNP M, heterogeneous nuclear ribonucleoprotein M	94.65
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	94.54
2kn4_A	158	Immunoglobulin G-binding protein G, splicing FACT	94.5
2lkz_A	95	RNA-binding protein 5; RRM; NMR {Homo sapiens}	94.38
3ns6_A	100	Eukaryotic translation initiation factor 3 subuni;	94.3
2d9p_A	103	Polyadenylate-binding protein 3; RRM domain, struc	94.26
4f25_A	115	Polyadenylate-binding protein 1; RRM fold, transla	94.18
2cpf_A	98	RNA binding motif protein 19; RNA recognition moti	94.06
2err_A	109	Ataxin-2-binding protein 1; protein-RNA complex, R	93.97
2dgo_A	115	Cytotoxic granule-associated RNA binding protein 1	93.83
3bs9_A	87	Nucleolysin TIA-1 isoform P40; RNA recognition mot	93.73
2cq1_A	101	PTB-like protein L; RRM domain, structural genomic	93.61
2khc_A	118	Testis-specific RNP-type RNA binding protein; RRM,	93.58
3s7r_A	87	Heterogeneous nuclear ribonucleoprotein A/B; ferre	93.56
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	93.55
1wex_A	104	Hypothetical protein (riken cDNA 2810036L13); stru	93.52
1x4c_A	108	Splicing factor, arginine/serine-rich 1; structura	93.48
2cph_A	107	RNA binding motif protein 19; RNA recognition moti	93.47
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	93.45
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	93.34
1x4a_A	109	Splicing factor, arginine/serine-rich 1 (splicing	93.34
1x5s_A	102	Cold-inducible RNA-binding protein; structure geno	93.33
2ytc_A	85	PRE-mRNA-splicing factor RBM22; RRM domain, RBD, s	93.31
2cqc_A	95	Arginine/serine-rich splicing factor 10; RNA recog	93.31
2m2b_A	131	RNA-binding protein 10; T-cell, JCSG, MPP, PSI-bio	93.05
1x5u_A	105	Splicing factor 3B subunit 4 (spliceosome associat	93.04
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	93.0
2e5j_A	97	Methenyltetrahydrofolate synthetase domain contain	92.94
1whx_A	111	Hypothetical protein riken cDNA 1200009A02; RNA re	92.94
3tyt_A	205	Heterogeneous nuclear ribonucleoprotein L; ferredo	92.87
3d2w_A	89	TAR DNA-binding protein 43; DP-43 proteinopathy, T	92.85
1x4e_A	85	RNA binding motif, single-stranded interacting pro	92.82
2ad9_A	119	Polypyrimidine tract-binding protein 1; RBD, RRM,	92.81
4fxv_A	99	ELAV-like protein 1; RNA recognition motif, putati	92.79
1wi8_A	104	EIF-4B, eukaryotic translation initiation factor 4	92.72
3mdf_A	85	Peptidyl-prolyl CIS-trans isomerase E; RRM domain,	92.7
1whw_A	99	Hypothetical protein riken cDNA 1200009A02; RNA re	92.7
1x4d_A	102	Matrin 3; structural genomics, RRM domain, NPPSFA,	92.68
3ex7_B	126	RNA-binding protein 8A; protein-RNA complex, mRNA	92.63
2cq0_A	103	Eukaryotic translation initiation factor 3 subunit	92.6
2x1f_A	96	MRNA 3'-END-processing protein RNA15; transcriptio	92.56
2la6_A	99	RNA-binding protein FUS; structural genomics, nort	92.48
2mss_A	75	Protein (musashi1); RNA-binding domain, RNA bindin	92.47
2dnz_A	95	Probable RNA-binding protein 23; RNA recognition m	92.44
3ucg_A	89	Polyadenylate-binding protein 2; ferredoxin-like,	92.44
1x4h_A	111	RNA-binding protein 28; structural genomics, RRM d	92.43
1sjq_A	105	Polypyrimidine tract-binding protein 1; babbab mot	92.42
2dgs_A	99	DAZ-associated protein 1; RRM domain, structural g	92.41
4a8x_A	88	RNA-binding protein with serine-rich domain 1; tra	92.37
1uaw_A	77	Mouse-musashi-1; RNP-type structure, RNA binding p	92.33
2ywk_A	95	Putative RNA-binding protein 11; RRM-domain, struc	92.24
1wf0_A	88	TDP-43, TAR DNA-binding protein-43; structural gen	92.22
2cqb_A	102	Peptidyl-prolyl CIS-trans isomerase E; RNA recogni	92.2
2diu_A	96	KIAA0430 protein; structural genomics, RRM domain,	92.15
2dgt_A	92	RNA-binding protein 30; RRM domain, structural gen	92.14
1x5t_A	96	Splicing factor 3B subunit 4; structure genomics,	92.08
1why_A	97	Hypothetical protein riken cDNA 1810017N16; RNA re	92.03
2lea_A	135	Serine/arginine-rich splicing factor 2; SR protein	91.9
2dnm_A	103	SRP46 splicing factor; RRM domain, RBD, structural	91.9
2e5h_A	94	Zinc finger CCHC-type and RNA-binding motif- conta	91.87
2jrs_A	108	RNA-binding protein 39; RNA binding motif of RBM39	91.87
2ku7_A	140	MLL1 PHD3-CYP33 RRM chimeric protein; transcriptio	91.83
3md1_A	83	Nuclear and cytoplasmic polyadenylated RNA-bindin	91.82
2dnh_A	105	Bruno-like 5, RNA binding protein; RRM domain, RBD	91.8
2cq4_A	114	RNA binding motif protein 23; RRM domain, structur	91.75
2dgp_A	106	Bruno-like 4, RNA binding protein; RRM domain, str	91.75
2cpz_A	115	CUG triplet repeat RNA-binding protein 1; RRM doma	91.69
1oo0_B	110	CG8781-PA, drosophila Y14; RNA recognition motif,	91.63
3beg_B	115	Splicing factor, arginine/serine-rich 1; kinase, S	91.61
2dh8_A	105	DAZ-associated protein 1; RRM domain, structural g	91.57
2cqg_A	103	TDP-43, TAR DNA-binding protein-43; RNA recognitio	91.54
2rs2_A	109	Musashi-1, RNA-binding protein musashi homolog 1;	91.53
1x4b_A	116	Heterogeneous nuclear ribonucleoproteins A2/B1; st	91.32
1p1t_A	104	Cleavage stimulation factor, 64 kDa subunit; RNA r	91.31
2jwn_A	124	Embryonic polyadenylate-binding protein 2-B; epabp	91.18
2dgx_A	96	KIAA0430 protein; RRM domain, structural genomics,	91.16
2g4b_A	172	Splicing factor U2AF 65 kDa subunit; protein-RNA c	91.15
2cqd_A	116	RNA-binding region containing protein 1; RNA recog	90.97
1rk8_A	165	CG8781-PA, CG8781-PA protein; mRNA processing, RRM	90.92
1u6f_A	139	Tcubp1, RNA-binding protein UBP1; trypanosome, mRN	90.92
2do4_A	100	Squamous cell carcinoma antigen recognized by T- c	90.88
1x5o_A	114	RNA binding motif, single-stranded interacting pro	90.82
2do0_A	114	HnRNP M, heterogeneous nuclear ribonucleoprotein M	90.76
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	90.69
2cpj_A	99	Non-POU domain-containing octamer-binding protein;	90.64
2xs2_A	102	Deleted in azoospermia-like; RNA binding protein-R	90.62
2ki2_A	90	SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA	90.55
2la4_A	101	Nuclear and cytoplasmic polyadenylated RNA-bindin	90.54
2dit_A	112	HIV TAT specific factor 1 variant; structural geno	90.51
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	90.5
1iqt_A	75	AUF1, heterogeneous nuclear ribonucleoprotein D0;	90.35
2cpx_A	115	Hypothetical protein FLJ11016; RRM domain, structu	90.22
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	90.2
3p5t_L	90	Cleavage and polyadenylation specificity factor S;	90.15
2hvz_A	101	Splicing factor, arginine/serine-rich 7; RRM, RNA	90.09
1h2v_Z	156	20 kDa nuclear CAP binding protein; CAP-binding-co	90.06
2dis_A	109	Unnamed protein product; structural genomics, RRM	90.01
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	89.97
2dnl_A	114	Cytoplasmic polyadenylation element binding protei	89.93
2cpe_A	113	RNA-binding protein EWS; RNA recognition motif, RR	89.88
3ue2_A	118	Poly(U)-binding-splicing factor PUF60; RNA recogni	89.76
2kxn_B	129	Transformer-2 protein homolog beta; SR protein, RR	89.73
3ulh_A	107	THO complex subunit 4; nuclear protein, RNA bindin	89.55
2cpi_A	111	CCR4-NOT transcription complex subunit 4; RNA reco	89.48
2ek1_A	95	RNA-binding protein 12; RNA recognition motif, dim	89.31
1wez_A	102	HnRNP H', FTP-3, heterogeneous nuclear ribonucleop	89.26
3lqv_A	115	PRE-mRNA branch site protein P14; cysless mutant,	89.23
2div_A	99	TRNA selenocysteine associated protein; structural	89.2
2cjk_A	167	Nuclear polyadenylated RNA-binding protein 4; HRP1	89.17
1p27_B	106	RNA-binding protein 8A; nuclear protein, mRNA spli	89.13
1nu4_A	97	U1A RNA binding domain; RNA recognition motif, U1	89.07
3s6e_A	114	RNA-binding protein 39; ferredoxin-like, structura	89.05
2e44_A	96	Insulin-like growth factor 2 mRNA binding protein	89.01
2j76_E	100	EIF-4B, EIF4B, eukaryotic translation initiation f	89.0
2dgu_A	103	Heterogeneous nuclear ribonucleoprotein Q; RRM dom	88.93
1wf1_A	110	RNA-binding protein RALY; structural genomics, RRM	88.88
2fc9_A	101	NCL protein; structure genomics, RRM_1 domain, str	88.87
1x4g_A	109	Nucleolysin TIAR; structural genomics, RRM domain,	88.81
2dng_A	103	Eukaryotic translation initiation factor 4H; RRM d	88.79
3nmr_A	175	Cugbp ELAV-like family member 1; RRM, PRE-mRNA spl	88.72
2dnq_A	90	RNA-binding protein 4B; RRM domain,RBD, structural	88.59
1x5p_A	97	Negative elongation factor E; structure genomics,	88.48
2dhg_A	104	TRNA selenocysteine associated protein (SECP43); R	88.46
3egn_A	143	RNA-binding protein 40; RNA recognition motif (RRM	88.38
1wg5_A	104	Heterogeneous nuclear ribonucleoprotein H; structu	88.36
3md3_A	166	Nuclear and cytoplasmic polyadenylated RNA-bindin	88.36
1s79_A	103	Lupus LA protein; RRM, alpha/beta, RNA binding pro	88.36
1l3k_A	196	Heterogeneous nuclear ribonucleoprotein A1; nuclea	88.19
1wel_A	124	RNA-binding protein 12; structural genomics, NPPSF	88.07
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	88.06
3pgw_A	282	U1-A; protein-RNA complex, U1 snRNA, SM fold, SM c	87.97
2e5g_A	94	U6 snRNA-specific terminal uridylyltransferase 1;	87.85
2jvr_A	111	Nucleolar protein 3; RNA recognition motif, nucleu	87.84
1x4f_A	112	Matrin 3; structural genomics, RRM domain, NPPSFA,	87.8
2a3j_A	127	U1 small nuclear ribonucleoprotein A; computationa	87.73
2xnq_A	97	Nuclear polyadenylated RNA-binding protein 3; tran	87.63
2fy1_A	116	RNA-binding motif protein, Y chromosome, family 1	87.44
2i2y_A	150	Fusion protein consists of immunoglobin G- binding	87.35
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	87.32
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	87.25
2cqp_A	98	RNA-binding protein 12; RNA recognition motif, RRM	87.23
2kvi_A	96	Nuclear polyadenylated RNA-binding protein 3; RNA-	87.19
2kt5_A	124	RNA and export factor-binding protein 2; chaperone	86.99
3pgw_S	437	U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM	86.91
3tht_A	345	Alkylated DNA repair protein ALKB homolog 8; struc	86.66
1b7f_A	168	Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP	86.41
2qfj_A	216	FBP-interacting repressor; protein-DNA complex; HE	86.29
1fxl_A	167	Paraneoplastic encephalomyelitis antigen HUD; prot	86.15
2bz2_A	121	Negative elongation factor E; NELF E, RNA recognit	86.08
3n9u_C	156	Cleavage and polyadenylation specificity factor S;	86.07
1fjc_A	96	Nucleolin RBD2, protein C23; RNP, RRM, RNA binding	85.88
2cpy_A	114	RNA-binding protein 12; RRM domain, structural gen	85.7
2wbr_A	89	GW182, gawky, LD47780P; DNA-binding protein, RRM,	85.56
2lcw_A	116	RNA-binding protein FUS; RRM, nucleic acid binding	85.68
2dnp_A	90	RNA-binding protein 14; RRM domain, RBD, structura	85.27
2jvo_A	108	Nucleolar protein 3; nucleus, phosphorylation, rib	85.08
2lmi_A	107	GRSF-1, G-rich sequence factor 1; G-rich RNA seque	84.84
1fj7_A	101	Nucleolin RBD1, protein C23; RNP, RRM, RNA binding	84.61
2cpd_A	99	Apobec-1 stimulating protein; RNA recognition moti	84.31
2ghp_A	292	U4/U6 snRNA-associated splicing factor PRP24; RNA	84.18
1fje_B	175	Nucleolin RBD12, protein C23; RNP, RRM, RNA bindin	83.75
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	83.09
2lxi_A	91	RNA-binding protein 10; NMR {Homo sapiens}	82.97
3sde_A	261	Paraspeckle component 1; RRM, anti parallel right	82.9
2f3j_A	177	RNA and export factor binding protein 2; RRM domai	82.52
2yh0_A	198	Splicing factor U2AF 65 kDa subunit; PRE-mRNA spli	82.16
4f02_A	213	Polyadenylate-binding protein 1; mRNA, eukaryotic	81.75
2voo_A	193	Lupus LA protein; RNA-binding protein, RNA recogni	81.43
3smz_A	284	Protein raver-1, ribonucleoprotein PTB-binding 1;	81.13
2cqh_A	93	IGF-II mRNA-binding protein 2 isoform A; RNA recog	81.13
2hgm_A	126	HNRPF protein, heterogeneous nuclear ribonucleopro	81.03
1qm9_A	198	Polypyrimidine tract-binding protein; ribonucleopr	80.86
1owx_A	121	Lupus LA protein, SS-B, LA; RRM, transcription; NM	80.78

>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A

Probab=98.89  E-value=8.5e-10  Score=77.63  Aligned_cols=58  Identities=43%  Similarity=0.642  Sum_probs=35.5

Q ss_pred             HHHHHHHHHhhhhhcCC-------------CCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172           4 ASAQAALQAAQALTGQT-------------DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus         4 ~~aqaALqa~n~v~~~~-------------~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.||++++++++++++.             ..+.+|++||+|.|.|+-|+||-|.|+++|+ +||.|.+-.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ps~vl~l~VgNL~~~vted~L~~~Fs-~fG~V~~V~i   78 (164)
T 1sjr_A            8 GSAQAALQAVNSVQSGNLALAASAAAVDAGMAMAGQSPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIIT   78 (164)
T ss_dssp             --------------------------------CCCCCCEEEEEECSCCSCCCHHHHHHHHH-HHSCEEEEEE
T ss_pred             cchhHHHHHHHHhhcCCccccccccccccCCCCCCCCceEEEEEeCcCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            47899999998876641             2345789999999999999999999999999 9999986554

>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A

Probab=98.86  E-value=1.4e-09  Score=73.78  Aligned_cols=42  Identities=40%  Similarity=0.677  Sum_probs=33.6

Q ss_pred             CCCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          20 TDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        20 ~~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      ++.+.+||+||+|.|.|+.|+||.|.||++|+ +||.|.+-.+
T Consensus        19 ~~~~~~ps~VL~I~V~NL~~~vte~~L~~lFs-~yG~V~~V~i   60 (130)
T 3zzy_A           19 GMAMAGQSPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIIT   60 (130)
T ss_dssp             ------CCSEEEEEEESCCSCCCHHHHHHHHT-TSSCEEEEEE
T ss_pred             ccccCCCCceEEEEECCCCCCCCHHHHHHHHh-CcCCEEEEEE
Confidence            34667899999999999999999999999999 9999986533

>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=98.59  E-value=5.5e-08  Score=64.79  Aligned_cols=40  Identities=40%  Similarity=0.603  Sum_probs=36.5

Q ss_pred             CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      ....||+||+|.|.|+-|+||-|.||++|+ +||.|.+-.+
T Consensus        18 ~~~~ps~vl~l~V~NL~~~vt~~~L~~~Fs-~yG~V~~v~i   57 (124)
T 2e5i_A           18 DPSGGNKVLLLSIQNPLYPITVDVLYTVCN-PVGKVQRIVI   57 (124)
T ss_dssp             CCCCCCSEEEEEEESCCSCCCHHHHHHHHT-TTSCEEEEEE
T ss_pred             CCCCCCcEEEEEEcCcCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            455789999999999999999999999999 9999987665

>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A

Probab=95.88  E-value=0.0087  Score=37.71  Aligned_cols=49  Identities=14%  Similarity=-0.018  Sum_probs=33.3

Q ss_pred             CCCCCCCcEEEEEEecccce-----eehhhhhhhhcccccceeeeceeecc---ccccCc
Q psy9172          21 DTQGGPNTVLRVIIEHMLYP-----ITLDVLYQFDNYKFGHAFSTSLAMPR---DELAGF   72 (80)
Q Consensus        21 ~~~~~pn~VLrviIeN~~YP-----VTldVLhqiFs~~fG~Vlrq~~a~~~---~~~~~~   72 (80)
                      +....|+++|.  +.||+.|     -+-+-|...|+ +||.|.+=.+....   .++.||
T Consensus         2 ~i~~~~s~~l~--l~Nm~~~~~l~dd~~~dl~~~f~-~~G~V~~v~i~~~~~~~~~~~G~   58 (105)
T 2pe8_A            2 AMGKCPTKVVL--LRNMVGAGEVDEDLEVETKEECE-KYGKVGKCVIFEIPGAPDDEAVR   58 (105)
T ss_dssp             CGGGSCCSEEE--EESSSCSCCC---CHHHHHHHGG-GGSCEEEEEEEECSSCCTTTSEE
T ss_pred             CCCCCCCCEEE--EEcCCChHHhhHHHHHHHHHHHH-hcCCEEEEEEecCCCCCCCCcEE
Confidence            34457788866  5599865     25578899999 99999876555432   245565

>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A

Probab=95.76  E-value=0.0089  Score=37.57  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEEecccceeeh----------hhhhhhhcccccceeeeceeecc
Q psy9172          24 GGPNTVLRVIIEHMLYPITL----------DVLYQFDNYKFGHAFSTSLAMPR   66 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTl----------dVLhqiFs~~fG~Vlrq~~a~~~   66 (80)
                      +.|++||.  +.||+.|-.+          +=|...|+ +||.|.+=.+..+.
T Consensus         2 g~ps~vl~--L~Nm~~~~~l~~d~~~~~~~~dl~~~f~-k~G~V~~v~i~~~~   51 (105)
T 3v4m_A            2 GHPTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRPV   51 (105)
T ss_dssp             CSCCSEEE--EESSCCGGGSSSHHHHHHHHHHHHHHHH-TTSCEEEEECCCCB
T ss_pred             CCCCeEEE--EECCCCHHHccChHHHHHHHHHHHHHHH-ccCCEEEEEEeccC
Confidence            45788865  6788877444          46889999 99999865554444

>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}

Probab=95.28  E-value=0.014  Score=36.59  Aligned_cols=41  Identities=12%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecc--ccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPR--DELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~--~~~~~~   72 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-++....  .++-||
T Consensus         8 ~lfV~nL~~~~te~~L~~~F~-~~G~i~~v~i~~d~~tg~~rG~   50 (110)
T 3s8s_A            8 EVTFARLNDNVRETFLKDMCR-KYGEVEEVEILLHPRTRKHLGL   50 (110)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEEECTTTCCEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEEECCCCCceeeE
Confidence            577899999999999999999 99999865554432  244454

>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}

Probab=95.25  E-value=0.018  Score=37.01  Aligned_cols=45  Identities=11%  Similarity=0.124  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ...||++|.  |-|+-+.+|-+-|..+|+ +||.|.+  +-+..++--||
T Consensus        17 ~~~ps~~l~--V~NLp~~~te~~L~~lF~-~fG~V~~--v~i~~~kg~AF   61 (100)
T 3r27_A           17 KTPASPVVH--IRGLIDGVVEADLVEALQ-EFGPISY--VVVMPKKRQAL   61 (100)
T ss_dssp             CCCCCSEEE--EESCCTTCCHHHHHHHHG-GGSCEEE--EEEETTTTEEE
T ss_pred             cCCCCcEEE--EeCCCCCCCHHHHHHHHh-ccCCEEE--EEEEcCCCEEE
Confidence            446888754  789999999999999999 9999964  33344454444

>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=95.04  E-value=0.037  Score=33.08  Aligned_cols=44  Identities=16%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccC
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAG   71 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~   71 (80)
                      .+--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+....+.+.|
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~~~~~~~g   56 (103)
T 2cq3_A           13 STPKRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKG   56 (103)
T ss_dssp             CCCCEEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecCCCCcE
Confidence            3445677899999999999999999 9999986555544333344

>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.86  E-value=0.03  Score=33.50  Aligned_cols=44  Identities=9%  Similarity=0.101  Sum_probs=33.4

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+......+.||
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~~~~~~g~   57 (103)
T 2cqi_A           14 QPRTLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMITEHTSNDPY   57 (103)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEECCCCSSCCE
T ss_pred             CCCEEEEeCCCccCCHHHHHHHHH-hcCCEeEEEEEecCCCCCCE
Confidence            345677899999999999999999 99999865555544444443

>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}

Probab=94.72  E-value=0.028  Score=32.44  Aligned_cols=41  Identities=12%  Similarity=0.209  Sum_probs=28.3

Q ss_pred             EEEEeccccee------ehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPI------TLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPV------TldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .|-|.|+-+.+      |-+-|..+|+ +||.|.+-.+.....++.||
T Consensus         3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~i~~v~i~~~~g~~~g~   49 (81)
T 2krb_A            3 VIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGY   49 (81)
T ss_dssp             EEEEESCCCCCTTTHHHHHHHHHHHHH-TTCCEEEEECCCBTTBCCCE
T ss_pred             EEEEeCCCCCcHHHHHHHHHHHHHHHh-hcCCeEEEEecCCCCcEeEE
Confidence            35688886656      5699999999 99999765443223344554

>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}

Probab=94.69  E-value=0.029  Score=34.17  Aligned_cols=41  Identities=12%  Similarity=0.209  Sum_probs=30.0

Q ss_pred             EEEEeccccee------ehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPI------TLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPV------TldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|.|.|+-+.+      |-+-|..+|+ +||.|.+-.+.....++.||
T Consensus        17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~-~~G~v~~v~i~~~~g~~~G~   63 (105)
T 2nlw_A           17 VIVVDNVPQVGPDRLEKLKNVIHKIFS-KFGKITNDFYPEEDGKTKGY   63 (105)
T ss_dssp             EEEEESCCCCCTTTTTHHHHHHHHHHG-GGSCEEEEECCCBTTBSCCE
T ss_pred             EEEEeCCCcchhhhhHHHHHHHHHHHh-cCCCEEEEEeeCCCCCeeeE
Confidence            46789998877      7789999999 99999865444223344554

>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=94.65  E-value=0.021  Score=37.42  Aligned_cols=48  Identities=19%  Similarity=0.119  Sum_probs=35.4

Q ss_pred             CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCcc
Q psy9172          23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFR   73 (80)
Q Consensus        23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~~   73 (80)
                      ...|++.|-|---|+-|.+|-|-|..+|+ +||.|.+  +.|+.++.-||-
T Consensus        21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~-~fG~v~~--v~i~~~rgfaFV   68 (114)
T 2cq2_A           21 VSYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDA--LLMPPNKPYSFA   68 (114)
T ss_dssp             CSSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEE--EECCTTCSCEEE
T ss_pred             CCCCCCEEEEECCCCCCCCCHHHHHHHHH-hcCCeEE--EEEeCCCCEEEE
Confidence            34566665544366999999999999999 9999854  566767655653

>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A

Probab=94.65  E-value=0.028  Score=32.79  Aligned_cols=41  Identities=17%  Similarity=0.361  Sum_probs=32.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.....++-||
T Consensus        10 ~l~V~nlp~~~t~~~l~~~f~-~~G~v~~~~i~~~~g~~~g~   50 (92)
T 2dgv_A           10 QIFVRNLPFDFTWKMLKDKFN-ECGHVLYADIKMENGKSKGC   50 (92)
T ss_dssp             EEEECSCCTTCCHHHHHHHHH-TTSCEEEEEEEESSSCEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEccCCCcceE
Confidence            567899999999999999999 99999876665533334443

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=94.54  E-value=0.12  Score=31.83  Aligned_cols=60  Identities=13%  Similarity=0.137  Sum_probs=40.9

Q ss_pred             HHHHHHHHHhhhhhcC----------CCCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172           4 ASAQAALQAAQALTGQ----------TDTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus         4 ~~aqaALqa~n~v~~~----------~~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      ..|+.|++.++.....          ......+.+--.+.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus        52 ~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~~  121 (166)
T 3md3_A           52 HDANIALQTLNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVMW  121 (166)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHT-TSTTEEEEEEEE
T ss_pred             HHHHHHHHHcCCCccCCCeeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHh-ccCCeeEEEEEe
Confidence            4677888777632111          11112233345678899999999999999999 999998655543

>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}

Probab=94.50  E-value=0.092  Score=33.47  Aligned_cols=35  Identities=14%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +--.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        69 ~~~~l~v~nl~~~~~~~~l~~~F~-~~G~v~~~~i~  103 (158)
T 2kn4_A           69 GMTSLKVDNLTYRTSPDTLRRVFE-KYGRVGDVYIP  103 (158)
T ss_dssp             BCCEEEEESCCTTCCHHHHHHHHH-HHSCEEEEECC
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEe
Confidence            345678899999999999999999 99999754443

>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}

Probab=94.38  E-value=0.024  Score=35.03  Aligned_cols=38  Identities=8%  Similarity=0.191  Sum_probs=32.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL   69 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~   69 (80)
                      .|.|.|+-+-+|-|-|.++|+ +||.+....+-+++|+.
T Consensus        11 tlfV~nL~~~~tee~L~~~F~-~~G~i~v~~v~i~~d~~   48 (95)
T 2lkz_A           11 TIILRNIAPHTVVDSIMTALS-PYASLAVNNIRLIKDKQ   48 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHST-TTCCCCGGGEECCCCSS
T ss_pred             EEEEeCCCCcCCHHHHHHHHH-hhCCccEEEEEEEecCC
Confidence            478999999999999999999 99987666777777754

>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A

Probab=94.30  E-value=0.027  Score=34.13  Aligned_cols=35  Identities=20%  Similarity=0.338  Sum_probs=27.9

Q ss_pred             EEEEecccc------eeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLY------PITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~Y------PVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|.|.|+=|      .+|-+-|..+|+ +||.|.+-.  +++++
T Consensus         8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~-~~G~i~~v~--i~~d~   48 (100)
T 3ns6_A            8 YIVVNGAPVIPSAKVPVLKKALTSLFS-KAGKVVNME--FPIDE   48 (100)
T ss_dssp             EEEEESCCCCBGGGHHHHHHHHHHHHH-TTSCEEEEE--CCEET
T ss_pred             EEEEeCCCcCChHHHHHHHHHHHHHHH-hcCCEeEEE--EEEcC
Confidence            367899988      899999999999 999997544  44443

>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.26  E-value=0.044  Score=32.74  Aligned_cols=39  Identities=18%  Similarity=0.174  Sum_probs=31.6

Q ss_pred             CCcEEEEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172          26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      +.+--+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+...
T Consensus        12 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~~   50 (103)
T 2d9p_A           12 RYQVVNLYVKNLDDGIDDERLRKAFS-PFGTITSAKVMME   50 (103)
T ss_dssp             CSSCCCEEEECCCTTCCHHHHHHTTT-TTSCEEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEEcC
Confidence            33455788999999999999999999 9999976555443

>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A

Probab=94.18  E-value=0.033  Score=34.57  Aligned_cols=41  Identities=20%  Similarity=0.368  Sum_probs=33.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-++......+-||
T Consensus         7 ~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~d~~~~kg~   47 (115)
T 4f25_A            7 NIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGY   47 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHh-ccCCEEEEEEeecCCCCCce
Confidence            478999999999999999999 99999876666555544444

>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=94.06  E-value=0.031  Score=33.03  Aligned_cols=35  Identities=17%  Similarity=0.244  Sum_probs=28.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPR   66 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~   66 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-.+....
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~~~   41 (98)
T 2cpf_A            7 GLFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKKK   41 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEecC
Confidence            466889999999999999999 99999765555443

>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.97  E-value=0.043  Score=33.70  Aligned_cols=42  Identities=17%  Similarity=0.298  Sum_probs=31.8

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      -+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.....++-||
T Consensus        30 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~~~~~~~kg~   71 (109)
T 2err_A           30 KRLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGF   71 (109)
T ss_dssp             CEEEEESCCTTCCHHHHHHHGG-GTCCCSCEEECCBTTBCTTE
T ss_pred             CEEEEECCCCcCCHHHHHHHHH-hcCCEEEEEEEECCCCCceE
Confidence            3567899999999999999999 99999765554443333443

>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A

Probab=93.83  E-value=0.11  Score=31.49  Aligned_cols=39  Identities=13%  Similarity=0.143  Sum_probs=31.4

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      ..+.+--.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~   48 (115)
T 2dgo_A           10 KDTSNHFHVFVGDLSPEITTEDIKAAFA-PFGRISDARVV   48 (115)
T ss_dssp             CCSTTCEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             CCCCCCcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence            3444556788999999999999999999 99999754443

>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}

Probab=93.73  E-value=0.068  Score=30.65  Aligned_cols=35  Identities=14%  Similarity=0.140  Sum_probs=28.8

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      --.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus         6 ~~~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~   40 (87)
T 3bs9_A            6 HFHVFVGDLSPEITTAAIAAAFA-PFGRISDARVVK   40 (87)
T ss_dssp             CEEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             ceEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEEe
Confidence            34677899999999999999999 999997554443

>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.61  E-value=0.069  Score=33.36  Aligned_cols=45  Identities=22%  Similarity=0.375  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ...|+++|.  |.|+-+-+|-+-|..+|+ +||.|.+  +.+..++--||
T Consensus        11 ~~~p~~~l~--V~nLp~~~te~~L~~~F~-~fG~v~~--v~i~~~kg~aF   55 (101)
T 2cq1_A           11 DGAPSRVLH--IRKLPGEVTETEVIALGL-PFGKVTN--ILMLKGKNQAF   55 (101)
T ss_dssp             CSSCCSEEE--EESCCTTCCHHHHHHTTT-TTSCEEE--EEEETTTTEEE
T ss_pred             cCCCCCEEE--EeCCCCCCCHHHHHHHHH-hcCCEEE--EEEECCCCEEE
Confidence            345676655  579999999999999999 9999964  44555655555

>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}

Probab=93.58  E-value=0.068  Score=32.63  Aligned_cols=33  Identities=21%  Similarity=0.141  Sum_probs=28.1

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        41 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~   73 (118)
T 2khc_A           41 CNLFIYHLPQEFTDTDLASTFL-PFGNVISAKVF   73 (118)
T ss_dssp             EEEEEECSCTTCCHHHHHHHTT-TSCEEEEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE
Confidence            4677899999999999999999 99999754443

>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A

Probab=93.56  E-value=0.068  Score=30.86  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=28.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      -+|-|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus        12 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~~   45 (87)
T 3s7r_A           12 GKMFVGGLSWDTSKKDLKDYFT-KFGEVVDCTIKM   45 (87)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHT-TTSCEEEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEee
Confidence            3567899999999999999999 999997655543

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=93.55  E-value=0.14  Score=32.00  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=27.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus        97 ~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~~~  128 (175)
T 3nmr_A           97 KLFIGMISKKCTENDIRVMFS-SFGQIEECRIL  128 (175)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             eEEEcCCCCcCCHHHHHHHHH-hCCCEEEEEEE
Confidence            577899999999999999999 99999754443

>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.52  E-value=0.081  Score=33.11  Aligned_cols=44  Identities=14%  Similarity=0.088  Sum_probs=33.8

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ..|+++|.  |.|+-+-+|-+-|..+|+ +||.|.+  +.|..++--||
T Consensus        12 ~~p~~~l~--V~nLp~~~te~~L~~~F~-~fG~V~~--v~i~~~kg~aF   55 (104)
T 1wex_A           12 VSVSPVVH--VRGLCESVVEADLVEALE-KFGTICY--VMMMPFKRQAL   55 (104)
T ss_dssp             CCCCSEEE--EESCCSSCCHHHHHHHHT-TTSCEEE--EEEETTTTEEE
T ss_pred             CCCCCEEE--EeCCCCCCCHHHHHHHHH-hCCCEEE--EEEECCCCEEE
Confidence            45676655  579999999999999999 9999976  44455555555

>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.48  E-value=0.11  Score=31.62  Aligned_cols=37  Identities=11%  Similarity=0.049  Sum_probs=30.6

Q ss_pred             CCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +.+--+|.|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus        12 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~~i~   48 (108)
T 1x4c_A           12 RRSENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADVY   48 (108)
T ss_dssp             CSCCCEEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEe
Confidence            34456788999999999999999999 99999765443

>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=93.47  E-value=0.076  Score=31.68  Aligned_cols=34  Identities=9%  Similarity=0.281  Sum_probs=27.9

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      --.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        15 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~   48 (107)
T 2cph_A           15 TSKILVRNIPFQANQREIRELFS-TFGELKTVRLP   48 (107)
T ss_dssp             CCCEEEESCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred             CCEEEEeCCCCcCCHHHHHHHHH-ccCCeEEEEEe
Confidence            34566899999999999999999 99999754443

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=93.45  E-value=0.16  Score=31.58  Aligned_cols=56  Identities=18%  Similarity=0.244  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhhhhhcCC----------CCCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172           4 ASAQAALQAAQALTGQT----------DTQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus         4 ~~aqaALqa~n~v~~~~----------~~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      ..|+.|++.++.....+          .....++.  .+.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus        56 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~--~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i  121 (168)
T 1b7f_A           56 MDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT--NLYVTNLPRTITDDQLDTIFG-KYGSIVQKNI  121 (168)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCCSSTTTTC--EEEEESCCTTCCHHHHHHHHT-SSSCEEEEEE
T ss_pred             HHHHHHHHhcCCCEeCCcEEEEEecCCCcccCCCC--CEEEeCCCCCCCHHHHHHhhh-cCCcEEEEEE
Confidence            46778887766321111          11122333  466889999999999999999 9999975444

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=93.34  E-value=0.12  Score=31.83  Aligned_cols=32  Identities=13%  Similarity=0.258  Sum_probs=27.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus        90 ~l~v~nl~~~~t~~~l~~~f~-~~G~i~~~~i~  121 (167)
T 1fxl_A           90 NLYVSGLPKTMTQKELEQLFS-QYGRIITSRIL  121 (167)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             cEEECCCCCcCCHHHHHHHHH-hcCCEeEEEEE
Confidence            467899999999999999999 99999764443

>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.34  E-value=0.09  Score=31.74  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=27.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        24 ~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i   54 (109)
T 1x4a_A           24 RIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDL   54 (109)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            566889999999999999999 9999976555

>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.33  E-value=0.069  Score=31.71  Aligned_cols=33  Identities=12%  Similarity=0.186  Sum_probs=27.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        13 ~~l~v~nLp~~~t~~~l~~~f~-~~G~i~~v~i~   45 (102)
T 1x5s_A           13 GKLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVV   45 (102)
T ss_dssp             SEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEEC
T ss_pred             CEEEEECCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence            3566899999999999999999 99999754443

>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.31  E-value=0.071  Score=30.56  Aligned_cols=32  Identities=16%  Similarity=0.116  Sum_probs=26.9

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS   61 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~   61 (80)
                      --.|-|.|+-+.+|-+-|..+|+ +||.|.+-.
T Consensus        12 ~~~l~V~~l~~~~t~~~l~~~f~-~~G~i~~~~   43 (85)
T 2ytc_A           12 ITTLYVGGLGDTITETDLRNHFY-QFGEIRTIT   43 (85)
T ss_dssp             CCCEEEECCTTTSCHHHHHHHHH-TTSCEEEEE
T ss_pred             ccEEEEcCCCCCCCHHHHHHHHH-hCCCEeEEE
Confidence            34567899999999999999999 999986533

>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.31  E-value=0.068  Score=31.13  Aligned_cols=33  Identities=15%  Similarity=0.018  Sum_probs=27.1

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        16 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~   48 (95)
T 2cqc_A           16 CCLGVFGLSLYTTERDLREVFS-KYGPIADVSIV   48 (95)
T ss_dssp             GCEEEESCCSSCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHH-hcCCeeEEEEE
Confidence            3456789999999999999999 99999754443

>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}

Probab=93.05  E-value=0.059  Score=33.98  Aligned_cols=37  Identities=14%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|-|.|+-|-+|-|-|..+|+ +||.|..-.+-+++|+
T Consensus        25 ~lfV~nL~~~~te~~L~~~F~-~~G~v~~~~v~i~~d~   61 (131)
T 2m2b_A           25 TIILRNLNPHSTMDSILGALA-PYAVLSSSNVRVIKDK   61 (131)
T ss_dssp             EEEECSCCTTCCSHHHHHHHG-GGCCCCTTTEECCBCS
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HhCCcceeeEEEEEcC
Confidence            678999999999999999999 9999975445566665

>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=93.04  E-value=0.11  Score=30.93  Aligned_cols=33  Identities=12%  Similarity=0.165  Sum_probs=27.7

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -.|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~   48 (105)
T 1x5u_A           16 ATVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMP   48 (105)
T ss_dssp             TEEEEECCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence            3567889999999999999999 99999764443

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=93.00  E-value=0.078  Score=35.60  Aligned_cols=41  Identities=20%  Similarity=0.368  Sum_probs=32.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|-|.|+-+.+|-+-|+++|+ +||.|.+-.+......+-||
T Consensus       105 ~l~v~nl~~~~t~~~l~~~F~-~~G~i~~~~i~~d~~~~~g~  145 (213)
T 4f02_A          105 NIFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGY  145 (213)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEEETTEEEEE
T ss_pred             cceECCcccccHHHHHHHHHh-hcCCeEEEEeeccCCCCceE
Confidence            477899999999999999999 99999876665544444444

>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.94  E-value=0.055  Score=32.16  Aligned_cols=38  Identities=11%  Similarity=0.031  Sum_probs=30.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|.|.|+-+-+|-+-|..+|+ +||.|.   +.+.++++.||
T Consensus        21 ~l~V~nL~~~~t~~~l~~~F~-~~G~v~---~~~~~~~~~g~   58 (97)
T 2e5j_A           21 DVYVGNLPRDARVSDLKRALR-ELGSVP---LRLTWQGPRRR   58 (97)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH-HTTCCC---SEEEEETTTTE
T ss_pred             EEEEeCCCCcCcHHHHHHHHH-hcCCEE---EEEEcCCCCcE
Confidence            677899999999999999999 999994   34445666665

>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.94  E-value=0.07  Score=33.04  Aligned_cols=35  Identities=9%  Similarity=0.136  Sum_probs=28.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+  +-++..+
T Consensus        12 ~l~V~nLp~~~te~~L~~~F~-~~G~i~~--v~i~~~~   46 (111)
T 1whx_A           12 VILAKNLPAGTLAAEIQETFS-RFGSLGR--VLLPEGG   46 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEE--EECCSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEE--EEEeCCC
Confidence            467889999999999999999 9999965  3344433

>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A

Probab=92.87  E-value=0.1  Score=35.75  Aligned_cols=36  Identities=11%  Similarity=0.188  Sum_probs=28.9

Q ss_pred             CCCcEEEEEEeccc-ceeehhhhhhhhcccccceeeecee
Q psy9172          25 GPNTVLRVIIEHML-YPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        25 ~pn~VLrviIeN~~-YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +++++|  -|-|+- +-||-|-|+.+|+ +||.|.+-++.
T Consensus         2 ~~~~~l--~V~nL~~~~~~~~~L~~~F~-~~G~v~~v~i~   38 (205)
T 3tyt_A            2 ADSPVL--MVYGLDQSKMNCDRVFNVFC-LYGNVEKVKFM   38 (205)
T ss_dssp             CCCSEE--EEECCCTTTCCHHHHHHHHT-TTSCEEEEEEC
T ss_pred             CCCCEE--EEeCCCcccCCHHHHHHHHH-hcCCeEEEEEe
Confidence            456665  477998 7899999999999 99999865543

>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}

Probab=92.85  E-value=0.09  Score=31.42  Aligned_cols=38  Identities=21%  Similarity=0.415  Sum_probs=29.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .+-|-|+-|-+|-+-|..+|+ +||.|.+-.  ++++ +-||
T Consensus        13 ~l~V~~Lp~~~te~~L~~~F~-~~G~i~~v~--i~~~-srGf   50 (89)
T 3d2w_A           13 KVFVGRCTEDMTAEELQQFFC-QYGEVVDVF--IPKP-FRAF   50 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-TTSCEEEEE--CCSS-CCSE
T ss_pred             EEEEeCCCCCCCHHHHHHHHh-ccCCEEEEE--EeeC-CCCE
Confidence            456799999999999999999 999997644  3443 5555

>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.82  E-value=0.11  Score=29.90  Aligned_cols=33  Identities=18%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus         7 ~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~~   39 (85)
T 1x4e_A            7 GLYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAIL   39 (85)
T ss_dssp             EEEEESCCTTCCHHHHHTTST-TTSCEEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEe
Confidence            566899999999999999999 999997654433

>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.81  E-value=0.099  Score=34.15  Aligned_cols=46  Identities=20%  Similarity=0.324  Sum_probs=34.5

Q ss_pred             CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ....|+++|.  |.|+-+-+|-+-|..+|+ +||.|.+-.  +..++--||
T Consensus        26 ~~~~ps~~Lf--VgNLp~~vte~dL~~lF~-~fG~V~~v~--i~~~kG~AF   71 (119)
T 2ad9_A           26 SAGVPSRVIH--IRKLPIDVTEGEVISLGL-PFGKVTNLL--MLKGKNQAF   71 (119)
T ss_dssp             SCSSCCSEEE--EESCCTTCCHHHHHHHHT-TTSCCCEEE--EEGGGTEEE
T ss_pred             ccCCCCCEEE--EeCCCCCCCHHHHHHHHH-hcCCEEEEE--EeCCCCEEE
Confidence            3446677665  579999999999999999 999997544  445555555

>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}

Probab=92.79  E-value=0.092  Score=32.06  Aligned_cols=32  Identities=22%  Similarity=0.243  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      ++-|.|+=+-+|-+-|.++|+ +||.|.+=++.
T Consensus        21 ~lfV~nLp~~~te~~L~~~F~-~~G~I~~v~i~   52 (99)
T 4fxv_A           21 NLIVNYLPQNMTQDELRSLFS-SIGEVESAKLI   52 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEEeEee
Confidence            478999999999999999999 99999754443

>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.72  E-value=0.25  Score=29.46  Aligned_cols=37  Identities=14%  Similarity=0.347  Sum_probs=29.3

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      .+--.|-|.|+-+-+|-+-|..+|+ +|| |.+  +-++.+
T Consensus        13 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G-i~~--v~i~~~   49 (104)
T 1wi8_A           13 SPPYTAFLGNLPYDVTEESIKEFFR-GLN-ISA--VRLPRE   49 (104)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHTT-TSC-EEE--EECCBC
T ss_pred             CCCCEEEEeCCCCcCCHHHHHHHHH-HCC-ceE--EEEecC
Confidence            3446788999999999999999999 999 764  444444

>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*

Probab=92.70  E-value=0.12  Score=29.41  Aligned_cols=31  Identities=13%  Similarity=0.074  Sum_probs=26.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         9 ~l~V~nl~~~~~~~~l~~~f~-~~G~i~~v~i   39 (85)
T 3mdf_A            9 VLYVGGLAEEVDDKVLHAAFI-PFGDITDIQI   39 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHG-GGSCEEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHh-ccCCEEEEEE
Confidence            466889999999999999999 9999965443

>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.70  E-value=0.1  Score=30.75  Aligned_cols=32  Identities=13%  Similarity=0.202  Sum_probs=27.0

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         9 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i   40 (99)
T 1whw_A            9 GRLFVRNLSYTSSEEDLEKLFS-AYGPLSELHY   40 (99)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHH-TTSCEEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEE
Confidence            3577889999999999999999 9999965443

>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.68  E-value=0.074  Score=33.61  Aligned_cols=44  Identities=16%  Similarity=0.032  Sum_probs=32.9

Q ss_pred             CCCCcEEEEEEecccc-eeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          24 GGPNTVLRVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        24 ~~pn~VLrviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ..|+++|  -|.|+-| -+|-+-|..+|+ +||.|.+=.  +..++--||
T Consensus        12 ~~p~~~l--~V~nLp~~~~te~dL~~lF~-~fG~V~~v~--i~~~kg~aF   56 (102)
T 1x4d_A           12 VETRRVV--HIMDFQRGKNLRYQLLQLVE-PFGVISNHL--ILNKINEAF   56 (102)
T ss_dssp             CCCCCEE--EEESCCCSSSHHHHHHTTTG-GGSCEEEEE--ECSSSSCEE
T ss_pred             CCCCCEE--EEeCCCCCcCCHHHHHHHHH-hcCCEEEEE--EEcCCCEEE
Confidence            3566655  4789999 999999999999 999997544  344554444

>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*

Probab=92.63  E-value=0.12  Score=31.90  Aligned_cols=35  Identities=9%  Similarity=0.063  Sum_probs=28.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      -.|.|.|+-+.+|-+-|..+|+ +||.|..  +-++.+
T Consensus        23 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~--v~i~~~   57 (126)
T 3ex7_B           23 WILFVTGVHEEATEEDIHDKFA-EYGEIKN--IHLNLD   57 (126)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHH-TTSCEEE--EECCBC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEEec
Confidence            3577899999999999999999 9999964  444444

>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.60  E-value=0.19  Score=29.91  Aligned_cols=34  Identities=12%  Similarity=0.045  Sum_probs=28.2

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +--.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        14 ~~~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i   47 (103)
T 2cq0_A           14 DNATIRVTNLSEDTRETDLQELFR-PFGSISRIYL   47 (103)
T ss_dssp             SSEEEEEESCCTTCCHHHHHTTST-TTCCEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEE
Confidence            345567889999999999999999 9999976444

>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B

Probab=92.56  E-value=0.12  Score=30.54  Aligned_cols=33  Identities=12%  Similarity=0.235  Sum_probs=27.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus         4 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~   36 (96)
T 2x1f_A            4 VVYLGSIPYDQTEEQILDLCS-NVGPVINLKMMF   36 (96)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCB
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCCEEEEEEEe
Confidence            356789999999999999999 999997654443

>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}

Probab=92.48  E-value=0.13  Score=30.50  Aligned_cols=33  Identities=6%  Similarity=0.133  Sum_probs=28.3

Q ss_pred             CCcEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172          26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      |.+--.+-|.|+-+-+|-+-|..+|+ +||.|.+
T Consensus        10 ~~~~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~   42 (99)
T 2la6_A           10 HSDNNTIFVQGLGENVTIESVADYFK-QIGIIKT   42 (99)
T ss_dssp             CCCCSEEEEECCCSSCCHHHHHHHHT-TTSCBCE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHH-HhCCEee
Confidence            34445677899999999999999999 9999976

>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A

Probab=92.47  E-value=0.076  Score=29.83  Aligned_cols=31  Identities=13%  Similarity=0.295  Sum_probs=26.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         1 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i   31 (75)
T 2mss_A            1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDDAML   31 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHH-TTSCCSEECC
T ss_pred             CEEEecCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            367889989999999999999 9999975443

>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.44  E-value=0.14  Score=29.79  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus         7 ~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~   38 (95)
T 2dnz_A            7 GLYVGSLHFNITEDMLRGIFE-PFGKIDNIVLM   38 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEeEEEEe
Confidence            566789999999999999999 99999754443

>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A

Probab=92.44  E-value=0.14  Score=29.44  Aligned_cols=32  Identities=13%  Similarity=0.136  Sum_probs=27.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +|-|.|+-+-+|-+-|...|+ +||.|.+-.+.
T Consensus         8 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~   39 (89)
T 3ucg_A            8 SIYVGNVDYGATAEELEAHFH-GCGSVNRVTIL   39 (89)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGCCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE
Confidence            467889989999999999999 99999754443

>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.43  E-value=0.14  Score=30.71  Aligned_cols=34  Identities=15%  Similarity=0.196  Sum_probs=27.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|..  +-++.+
T Consensus        17 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~--v~i~~~   50 (111)
T 1x4h_A           17 TVFIRNLSFDSEEEALGEVLQ-QFGDLKY--VRVVLH   50 (111)
T ss_dssp             CEEEESCCTTCCHHHHHHHHH-TTSCEEE--EECCBC
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCCeEE--EEEEec
Confidence            467889999999999999999 9999964  444444

>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.42  E-value=0.057  Score=34.76  Aligned_cols=40  Identities=15%  Similarity=0.181  Sum_probs=30.9

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|..-.  +..++--||
T Consensus        17 ~~LfV~nLp~~vte~dL~~lF~-~fG~V~~v~--i~~~kGfaF   56 (105)
T 1sjq_A           17 RVIHIRKLPIDVTEGEVISLGL-PFGKVTNLL--MLKGKNQAF   56 (105)
T ss_dssp             CEEEECSCCTTSCHHHHHHHHH-HHCCEEEEE--EETTTTEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEE--EEcCCCEEE
Confidence            3455799999999999999999 999997544  445554455

>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.41  E-value=0.19  Score=29.66  Aligned_cols=32  Identities=13%  Similarity=0.157  Sum_probs=26.9

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus        11 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i   42 (99)
T 2dgs_A           11 NKIFVGGIPHNCGETELREYFK-KFGVVTEVVM   42 (99)
T ss_dssp             CEEEEESCCSSCCHHHHHHHHS-SSSCEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            3566889999999999999999 9999965443

>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}

Probab=92.37  E-value=0.13  Score=29.42  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus         6 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~~   38 (88)
T 4a8x_A            6 KVHIGRLTRNVTKDHIMEIFS-TYGKIKMIDMPV   38 (88)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH-TTSCEEEEECCE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEEe
Confidence            467899999999999999999 999997544433

>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.33  E-value=0.087  Score=29.52  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=28.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      +|-|.|+-+.+|-+-|...|+ +||.|.+  +-++.++
T Consensus         2 ~l~v~nlp~~~t~~~l~~~F~-~~G~v~~--v~i~~~~   36 (77)
T 1uaw_A            2 KMFIGGLSWQTTQEGLREYFG-QFGEVKE--CLVMRDP   36 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHT-TTSCCCC--EEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEE--EEEecCC
Confidence            367899999999999999999 9999964  4444443

>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}

Probab=92.24  E-value=0.14  Score=29.84  Aligned_cols=34  Identities=15%  Similarity=0.269  Sum_probs=28.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-  -++.+
T Consensus        18 ~l~v~nlp~~~~~~~l~~~F~-~~G~i~~v--~i~~~   51 (95)
T 2ywk_A           18 TVFVGNLEARVREEILYELFL-QAGPLTKV--TICKD   51 (95)
T ss_dssp             EEEEECCCTTCCHHHHHHHHG-GGSCEEEE--EEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCCEEEE--EEEEC
Confidence            566889999999999999999 99999754  44444

>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.22  E-value=0.11  Score=30.15  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=26.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+-+|-|-|..+|+ +||.|..-.+
T Consensus         7 ~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i   37 (88)
T 1wf0_A            7 GVFVGRCTGDMTEDELREFFS-QYGDVMDVFI   37 (88)
T ss_dssp             EEEEESCCSSSCHHHHHHHST-TTSCCCEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEE
Confidence            466799999999999999999 9999975444

>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.20  E-value=0.11  Score=30.85  Aligned_cols=34  Identities=18%  Similarity=0.193  Sum_probs=27.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+  +-++.+
T Consensus        14 ~l~V~nLp~~~t~~~l~~~f~-~~G~i~~--v~i~~~   47 (102)
T 2cqb_A           14 VLYVGGLAEEVDDKVLHAAFI-PFGDITD--IQIPLD   47 (102)
T ss_dssp             CEEEESCCSSCCHHHHHHHHT-TTSCCCC--EECCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHhh-ccCCEEE--EEEEec
Confidence            455789999999999999999 9999965  444444

>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.15  E-value=0.17  Score=33.05  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=26.9

Q ss_pred             CCCcEEEEEEecccceeehhh----hhhhhccccc-ceee
Q psy9172          25 GPNTVLRVIIEHMLYPITLDV----LYQFDNYKFG-HAFS   59 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTldV----LhqiFs~~fG-~Vlr   59 (80)
                      .|+.-| +-|.|+-+-++.|.    ||++|+ +|| .|+.
T Consensus         6 ~p~~T~-lYV~NL~~~~~~~~lk~~L~~lF~-~yGG~Vl~   43 (96)
T 2diu_A            6 SGCHTL-LYVYNLPANKDGKSVSNRLRRLSD-NCGGKVLS   43 (96)
T ss_dssp             CCSSEE-EEEESCCTTSCHHHHHHHHHHHHH-TTTCCEEE
T ss_pred             CCcceE-EEEeCCCCcCCHHHHHHHHHHHHH-HcCCeeEE
Confidence            456555 66999999999998    789999 995 9963

>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.14  E-value=0.18  Score=29.44  Aligned_cols=34  Identities=9%  Similarity=0.099  Sum_probs=28.4

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +--.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus         9 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~v~~   42 (92)
T 2dgt_A            9 ASTKLHVGNISPTCTNQELRAKFE-EYGPVIECDI   42 (92)
T ss_dssp             SSEEEEEESCCSSCCHHHHHHHHH-TTSCCCEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            345677899999999999999999 9999975443

>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=92.08  E-value=0.1  Score=30.56  Aligned_cols=29  Identities=24%  Similarity=0.325  Sum_probs=25.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-
T Consensus         7 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~~   35 (96)
T 1x5t_A            7 GIFIGNLDPEIDEKLLYDTFS-AFGVILQT   35 (96)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH-TTSCBSSC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeeEE
Confidence            567889999999999999999 99999643

>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1

Probab=92.03  E-value=0.093  Score=31.04  Aligned_cols=35  Identities=14%  Similarity=0.195  Sum_probs=28.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      +|-|.|+-+.+|-+-|.++|+ +||.|.+  +-+..++
T Consensus        19 ~l~V~nlp~~~t~~~l~~~F~-~~G~v~~--v~~~~~~   53 (97)
T 1why_A           19 RLWVGGLGPNTSLAALAREFD-RFGSIRT--IDHVKGD   53 (97)
T ss_dssp             CEEEECCCSSCCHHHHHHHHH-TTSCEEE--EEECSSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeeE--EEEeCCC
Confidence            456789999999999999999 9999965  3444443

>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A

Probab=91.90  E-value=0.096  Score=33.63  Aligned_cols=32  Identities=16%  Similarity=0.302  Sum_probs=27.2

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      =.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        48 ~~l~V~nLp~~~te~~L~~~F~-~~G~i~~v~i   79 (135)
T 2lea_A           48 TSLKVDNLTYRTSPDTLRRVFE-KYGRVGDVYI   79 (135)
T ss_dssp             CCEEEECCCSSCHHHHHHHHHG-GGSCCSEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            3577899999999999999999 9999965443

>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.90  E-value=0.24  Score=29.39  Aligned_cols=33  Identities=15%  Similarity=0.341  Sum_probs=27.8

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      --.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        13 ~~~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i   45 (103)
T 2dnm_A           13 MITLKVDNLTYRTSPDSLRRVFE-KYGRVGDVYI   45 (103)
T ss_dssp             CCEEEEESCCTTCCHHHHHHHHT-TTSCEEEEEC
T ss_pred             CeEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            44677899999999999999999 9999975443

>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.87  E-value=0.12  Score=30.03  Aligned_cols=31  Identities=19%  Similarity=0.489  Sum_probs=26.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus        18 ~l~V~nlp~~~t~~~l~~~f~-~~G~v~~v~i   48 (94)
T 2e5h_A           18 TVYVSNLPFSLTNNDLYRIFS-KYGKVVKVTI   48 (94)
T ss_dssp             SEEEESCCTTSCHHHHHHHTT-TTSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            355789999999999999999 9999975443

>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}

Probab=91.87  E-value=0.25  Score=30.29  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=29.6

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .+--+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        24 ~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~   59 (108)
T 2jrs_A           24 AGPMRLYVGSLHFNITEDMLRGIFE-PFGRIESIQLM   59 (108)
T ss_dssp             SSCEEEEEECCCSSCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence            3345788999999999999999999 99999754443

>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}

Probab=91.83  E-value=0.23  Score=30.62  Aligned_cols=37  Identities=19%  Similarity=0.165  Sum_probs=29.8

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      +--+|-|.|+-+-+|-+-|..+|+ +||.|.+  +-++.+
T Consensus        62 ~~~~l~v~nlp~~~~~~~l~~~f~-~~G~i~~--v~i~~~   98 (140)
T 2ku7_A           62 TKRVLYVGGLAEEVDDKVLHAAFI-PFGDITD--IQIPLD   98 (140)
T ss_dssp             SCCEEEEECCCTTCCHHHHHHHHG-GGSCEEE--EECCCC
T ss_pred             CCcEEEEEeCCCCCCHHHHHHHHH-hcCCEEE--EEEeec
Confidence            345677899999999999999999 9999975  444444

>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0

Probab=91.82  E-value=0.17  Score=28.69  Aligned_cols=32  Identities=9%  Similarity=0.104  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|...|+ +||.|.+-.+.
T Consensus         3 ~l~V~nlp~~~t~~~l~~~f~-~~G~i~~~~i~   34 (83)
T 3md1_A            3 NLFVGDLNVNVDDETLRNAFK-DFPSYLSGHVM   34 (83)
T ss_dssp             EEEEECCCTTCCHHHHHHHHT-TSTTEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEE
Confidence            577899999999999999999 99999765443

>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A

Probab=91.80  E-value=0.16  Score=30.26  Aligned_cols=32  Identities=6%  Similarity=0.102  Sum_probs=26.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        17 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~   48 (105)
T 2dnh_A           17 KLFVGMLNKQQSEEDVLRLFQ-PFGVIDECTVL   48 (105)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence            466899999999999999999 99999754443

>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.75  E-value=0.18  Score=30.56  Aligned_cols=32  Identities=16%  Similarity=0.115  Sum_probs=27.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus        27 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i~   58 (114)
T 2cq4_A           27 TVFCMQLAARIRPRDLEDFFS-AVGKVRDVRII   58 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-TTSCEEEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hCCCEeEEEEE
Confidence            577899999999999999999 99999754443

>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A

Probab=91.75  E-value=0.19  Score=29.97  Aligned_cols=35  Identities=11%  Similarity=0.298  Sum_probs=28.8

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .+--+|-|.|+-+.+|-+-|..+|+ +||.|..-.+
T Consensus        11 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i   45 (106)
T 2dgp_A           11 HDAIKLFIGQIPRNLDEKDLKPLFE-EFGKIYELTV   45 (106)
T ss_dssp             TTCEEEEEESCCTTCCHHHHHHHHH-HHSCCCEEEC
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEE
Confidence            3445678899999999999999999 9999965433

>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A

Probab=91.69  E-value=0.13  Score=31.36  Aligned_cols=33  Identities=21%  Similarity=0.239  Sum_probs=28.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-++..
T Consensus        27 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~   59 (115)
T 2cpz_A           27 NLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFI   59 (115)
T ss_dssp             CEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEE
Confidence            567899999999999999999 999997655443

>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*

Probab=91.63  E-value=0.19  Score=30.25  Aligned_cols=32  Identities=9%  Similarity=0.053  Sum_probs=27.3

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        27 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i   58 (110)
T 1oo0_B           27 WILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHL   58 (110)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            4567899999999999999999 9999975444

>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A

Probab=91.61  E-value=0.11  Score=32.16  Aligned_cols=33  Identities=12%  Similarity=0.068  Sum_probs=27.9

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      --+|.|.|+-|.+|-+-|..+|+ +||.|..-.+
T Consensus        16 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i   48 (115)
T 3beg_B           16 ENRVVVSGLPPSGSWQDLKDHMR-EAGDVCYADV   48 (115)
T ss_dssp             -CCEEEEECCSSCCTTHHHHHHG-GGSCEEEEEE
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            35688999999999999999999 9999975444

>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.57  E-value=0.13  Score=30.73  Aligned_cols=37  Identities=8%  Similarity=0.295  Sum_probs=29.9

Q ss_pred             CCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +.+--+|-|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        13 ~~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i~   49 (105)
T 2dh8_A           13 ADEIGKLFVGGLDWSTTQETLRSYFS-QYGEVVDCVIM   49 (105)
T ss_dssp             SSSSSEECCBSCCTTCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEe
Confidence            33445678899999999999999999 99999764443

>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.54  E-value=0.17  Score=30.11  Aligned_cols=32  Identities=16%  Similarity=0.283  Sum_probs=27.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        17 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i~   48 (103)
T 2cqg_A           17 DLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVK   48 (103)
T ss_dssp             CEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             EEEEEcCCCcCCHHHHHHHHH-hcCCeEEEEEE
Confidence            467899999999999999999 99999754443

>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}

Probab=91.53  E-value=0.15  Score=31.34  Aligned_cols=31  Identities=16%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        27 ~lfV~nLp~~~te~~L~~~F~-~~G~i~~v~i   57 (109)
T 2rs2_A           27 KMFIGGLSWQTTQEGLREYFG-QFGEVKECLV   57 (109)
T ss_dssp             CEEEESCCTTCCHHHHHHHHT-TTSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-ccCCeEEEEE
Confidence            567899999999999999999 9999975443

>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.32  E-value=0.19  Score=30.57  Aligned_cols=32  Identities=13%  Similarity=0.283  Sum_probs=27.3

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        28 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i   59 (116)
T 1x4b_A           28 RKLFIGGLSFETTEESLRNYYE-QWGKLTDCVV   59 (116)
T ss_dssp             TEEEEECCTTCCCHHHHHHHHT-SSCCCSEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            4577899999999999999999 9999965443

>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.31  E-value=0.12  Score=30.58  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=27.6

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus        10 ~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i~~   42 (104)
T 1p1t_A           10 SVFVGNIPYEATEEQLKDIFS-EVGPVVSFRLVY   42 (104)
T ss_dssp             CEEEESCCTTSCHHHHHHHHH-TTSCCSEEEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHH-hcCCeeEEEEEe
Confidence            467889999999999999999 999997654443

>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}

Probab=91.18  E-value=0.17  Score=31.04  Aligned_cols=31  Identities=16%  Similarity=0.110  Sum_probs=26.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        38 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i   68 (124)
T 2jwn_A           38 SVYVGNVDYGSTAQDLEAHFS-SCGSINRITI   68 (124)
T ss_dssp             EEEEEEECTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            577899999999999999999 9999975443

>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=91.16  E-value=0.27  Score=29.18  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=28.6

Q ss_pred             EEEEEEecccceeehhhhh----hhhcccccceeeecee
Q psy9172          29 VLRVIIEHMLYPITLDVLY----QFDNYKFGHAFSTSLA   63 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLh----qiFs~~fG~Vlrq~~a   63 (80)
                      --+|-|.|+-+.+|-+-|.    .+|+ +||.|.+-.+.
T Consensus         9 ~~~l~V~nL~~~~~~~~l~~~l~~~F~-~~G~v~~v~i~   46 (96)
T 2dgx_A            9 GADVQVSNIDYRLSRKELQQLLQEAFA-RHGKVKSVELS   46 (96)
T ss_dssp             CEEEEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEEC
T ss_pred             CCEEEEECCCCCCCHHHHHHHHHHhcc-ccCcEEEEEEE
Confidence            3578899999999999999    9999 99999754443

>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A

Probab=91.15  E-value=0.16  Score=31.83  Aligned_cols=33  Identities=15%  Similarity=0.162  Sum_probs=27.3

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -.+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus        95 ~~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~  127 (172)
T 2g4b_A           95 HKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLV  127 (172)
T ss_dssp             TCEEEECCCTTCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred             CEEEEEcCCCcCCHHHHHHHHH-hcCCceEEEEE
Confidence            3466889999999999999999 99999654443

>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.97  E-value=0.22  Score=30.25  Aligned_cols=33  Identities=15%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      --.|-|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus        17 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~i   49 (116)
T 2cqd_A           17 FTKIFVGGLPYHTTDASLRKYFE-GFGDIEEAVV   49 (116)
T ss_dssp             SSEEEEECCCSSCCHHHHHHHHH-TTSCEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-hCCCeeEEEE
Confidence            34567899999999999999999 9999965443

>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A

Probab=90.92  E-value=0.2  Score=32.68  Aligned_cols=31  Identities=10%  Similarity=0.062  Sum_probs=26.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus        74 ~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i  104 (165)
T 1rk8_A           74 ILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHL  104 (165)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHhh-cCCCEEEEEE
Confidence            567889999999999999999 9999965443

>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1

Probab=90.92  E-value=0.14  Score=31.97  Aligned_cols=35  Identities=11%  Similarity=0.159  Sum_probs=28.9

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .=.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus        42 ~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~v~i~~   76 (139)
T 1u6f_A           42 LRNLMVNYIPTTVDEVQLRQLFE-RYGPIESVKIVC   76 (139)
T ss_dssp             TSEEEEESCSTTCCHHHHHHHHH-HHSCEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEE
Confidence            34577899999999999999999 999997654443

>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.88  E-value=0.2  Score=29.67  Aligned_cols=31  Identities=16%  Similarity=0.234  Sum_probs=26.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus        19 ~l~v~nlp~~~t~~~l~~~F~-~~G~i~~v~i   49 (100)
T 2do4_A           19 KLFISGLPFSCTKEELEEICK-AHGTVKDLRL   49 (100)
T ss_dssp             CEEEESCCTTCCHHHHHHHHT-TTSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hCCCeEEEEE
Confidence            466789999999999999999 9999965443

>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.82  E-value=0.21  Score=30.18  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        27 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~   58 (114)
T 1x5o_A           27 NLYISNLPLSMDEQELENMLK-PFGQVISTRIL   58 (114)
T ss_dssp             EEEEESCCTTCCHHHHHHTTT-TTSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEEEEEE
Confidence            567899999999999999999 99999764443

>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=90.76  E-value=0.23  Score=29.96  Aligned_cols=31  Identities=13%  Similarity=0.211  Sum_probs=26.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        17 ~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~i   47 (114)
T 2do0_A           17 TVFVANLDYKVGWKKLKEVFS-MAGVVVRADI   47 (114)
T ss_dssp             CEEEESCCTTCCHHHHHHHHT-TTSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            466889999999999999999 9999975443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=90.69  E-value=0.21  Score=32.37  Aligned_cols=33  Identities=21%  Similarity=0.259  Sum_probs=28.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|.|.|+-+.+|-+-|.++|+ +||.|.+-.+..
T Consensus       127 ~l~v~nlp~~~t~~~l~~~f~-~~G~v~~v~i~~  159 (216)
T 2qfj_A          127 RIYVASVHQDLSDDDIKSVFE-AFGKIKSATLAR  159 (216)
T ss_dssp             EEEEECCCTTCCHHHHHHHHT-TSSCEEEEEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHh-ccCCeeEEEEEe
Confidence            567899999999999999999 999997655544

>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=90.64  E-value=0.16  Score=30.05  Aligned_cols=39  Identities=23%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .|-|.|+-+.+|-+-|..+|+ +||.|.+  +-++.++--||
T Consensus        17 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~--v~~~~~kg~af   55 (99)
T 2cpj_A           17 RLFVGNLPPDITEEEMRKLFE-KYGKAGE--VFIHKDKGFGF   55 (99)
T ss_dssp             EEEEESCCTTCCHHHHHHHTS-TTCCCSE--EEEETTTTEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHh-hcCCeEE--EEEecCCCEEE
Confidence            466789999999999999999 9999964  44444443333

>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A

Probab=90.62  E-value=0.25  Score=29.28  Aligned_cols=36  Identities=11%  Similarity=0.145  Sum_probs=29.1

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      =+|-|.|+-+-+|-+-|..+|+ +||.|.+-  -++.++
T Consensus        10 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v--~i~~~~   45 (102)
T 2xs2_A           10 NTVFVGGIDVRMDETEIRSFFA-RYGSVKEV--KIITDR   45 (102)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHG-GGSCEEEE--EEEECT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hCCCeEEE--EEEECC
Confidence            3677899999999999999999 99999654  444443

>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}

Probab=90.55  E-value=0.11  Score=30.20  Aligned_cols=31  Identities=19%  Similarity=0.510  Sum_probs=26.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         3 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i   33 (90)
T 2ki2_A            3 NIYVGNLVYSATSEQVKELFS-QFGKVFNVKL   33 (90)
T ss_dssp             EEEEEEECTTSSHHHHTTTHH-HHTCCSEEEE
T ss_pred             EEEECCCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            477899989999999999999 9999975443

>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}

Probab=90.54  E-value=0.2  Score=29.66  Aligned_cols=32  Identities=16%  Similarity=0.059  Sum_probs=27.2

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        28 ~~l~V~nlp~~~~~~~l~~~f~-~~G~i~~~~~   59 (101)
T 2la4_A           28 TTAYIGNIPHFATEADLIPLFQ-NFGFILDFKH   59 (101)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHH-TTSCCSEEEE
T ss_pred             CEEEEcCCCcccCHHHHHHHHH-hCCCEEEEEE
Confidence            3567899999999999999999 9999975443

>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.51  E-value=0.27  Score=30.18  Aligned_cols=44  Identities=25%  Similarity=0.246  Sum_probs=30.1

Q ss_pred             CCCCcEEEEEEecccceee-----------hhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          24 GGPNTVLRVIIEHMLYPIT-----------LDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVT-----------ldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ..|+++  |.|.||+.|..           -|-|...|+ +||.|.+-.  |+..++-||
T Consensus        12 ~~~s~~--l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~-~~G~v~~v~--i~~~~~~G~   66 (112)
T 2dit_A           12 MRHERV--VIIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRKLL--LFDRHPDGV   66 (112)
T ss_dssp             CCSCCE--EEEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSEEE--EETTCTTCE
T ss_pred             CCCceE--EEEEcCCCHHHhccCHHHHHHHHHHHHHHHH-ccCCEeEEE--EecCCCCEE
Confidence            345666  55789977765           368999999 999998653  333345565

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=90.50  E-value=0.23  Score=31.74  Aligned_cols=34  Identities=6%  Similarity=0.113  Sum_probs=28.7

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      -.|.|.|+-+-+|-+-|.++|+ +||.|.+-.+..
T Consensus       105 ~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~  138 (196)
T 1l3k_A          105 KKIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMT  138 (196)
T ss_dssp             SEEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEE
T ss_pred             ceEEEeCCCCCCCHHHHHHHHh-cCCCeEEEEEee
Confidence            4677899999999999999999 999997655443

>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A

Probab=90.35  E-value=0.12  Score=28.88  Aligned_cols=33  Identities=15%  Similarity=0.278  Sum_probs=27.0

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      |-|.|+-+.+|-+-|...|+ +||.|.+-  -++.+
T Consensus         2 l~v~nLp~~~t~~~l~~~F~-~~G~i~~v--~i~~~   34 (75)
T 1iqt_A            2 IFVGGLSPDTPEEKIREYFG-GFGEVESI--ELPMD   34 (75)
T ss_dssp             EEESCCCSSCCHHHHHHHHH-HHSCCSEE--CCCCS
T ss_pred             EEEeCCCCCCCHHHHHHHHH-hcCCeEEE--EEEec
Confidence            56889989999999999999 99999643  44444

>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.22  E-value=0.16  Score=30.65  Aligned_cols=27  Identities=11%  Similarity=0.080  Sum_probs=24.4

Q ss_pred             EEEEecccceeehhhhhhhhccccccee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAF   58 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vl   58 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.
T Consensus        27 ~l~V~nLp~~~t~~~l~~~f~-~~G~v~   53 (115)
T 2cpx_A           27 VLYLKNLSPRVTERDLVSLFA-RFQEKK   53 (115)
T ss_dssp             EEEEECCCTTCCHHHHHHHTH-HHHHSS
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HhCCcc
Confidence            566889999999999999999 999983

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=90.20  E-value=0.17  Score=31.57  Aligned_cols=32  Identities=9%  Similarity=0.229  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .+.|.|+-+.+|-+-|.++|+ +||.|.+-.+.
T Consensus        89 ~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~i~  120 (167)
T 2cjk_A           89 KIFVGGIGPDVRPKEFEEFFS-QWGTIIDAQLM  120 (167)
T ss_dssp             EEEEEEECTTCCHHHHHHHHH-TTSCCSEEECC
T ss_pred             eEEECCCCCCCCHHHHHHHHH-hCccEEEEEEE
Confidence            577899999999999999999 99999754443

>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C

Probab=90.15  E-value=0.14  Score=30.02  Aligned_cols=32  Identities=13%  Similarity=0.134  Sum_probs=25.8

Q ss_pred             EEEEecccceeehhhhhhhhccccc--ceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFG--HAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG--~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||  .|.+-.+.
T Consensus         3 ~l~V~nL~~~~t~~~l~~~F~-~~G~~~v~~v~i~   36 (90)
T 3p5t_L            3 ALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFF   36 (90)
T ss_dssp             -CEEESCCTTCCHHHHHHHHH-TTTCCCCCCEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HhCCCceEEEEEE
Confidence            467889999999999999999 999  77544443

>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}

Probab=90.09  E-value=0.18  Score=29.86  Aligned_cols=34  Identities=12%  Similarity=0.085  Sum_probs=27.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.+  +-++.+
T Consensus         2 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~--v~i~~~   35 (101)
T 2hvz_A            2 KVYVGNLGTGAGKGELERAFS-YYGPLRT--VWIARN   35 (101)
T ss_dssp             EEEEECCCSSCSHHHHHHHHH-HHCCCSE--EEEESS
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEeeC
Confidence            467899999999999999999 9999964  444444

>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X

Probab=90.06  E-value=0.27  Score=31.47  Aligned_cols=35  Identities=17%  Similarity=0.261  Sum_probs=28.6

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      -.|.|.|+-+-+|-+-|..+|+ +||.|.+  +-++.+
T Consensus        40 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~--v~i~~~   74 (156)
T 1h2v_Z           40 CTLYVGNLSFYTTEEQIYELFS-KSGDIKK--IIMGLD   74 (156)
T ss_dssp             CEEEEESCCTTCCHHHHHHHHG-GGSCEEE--EEEEEC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEEec
Confidence            4567889999999999999999 9999975  444444

>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=90.01  E-value=0.2  Score=29.99  Aligned_cols=30  Identities=10%  Similarity=0.019  Sum_probs=26.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccc-eeeec
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGH-AFSTS   61 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~-Vlrq~   61 (80)
                      +|-|.|+-+.+|-+-|..+|+ +||. |..-.
T Consensus        10 ~l~V~nLp~~~t~~~l~~~f~-~~G~~v~~v~   40 (109)
T 2dis_A           10 RLFIGGIPKMKKREEILEEIA-KVTEGVLDVI   40 (109)
T ss_dssp             EEEEECCCTTSCHHHHHHHHH-HHSTTEEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHH-HhcCCceEEE
Confidence            577899999999999999999 9998 76543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=89.97  E-value=0.29  Score=31.26  Aligned_cols=34  Identities=15%  Similarity=0.171  Sum_probs=28.6

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +--.|.|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus       113 ~~~~l~v~nl~~~~~~~~l~~~f~-~~G~v~~~~~  146 (198)
T 2yh0_A          113 SAHKLFIGGLPNYLNDDQVKELLT-SFGPLKAFNL  146 (198)
T ss_dssp             CCCEEEEECCCTTCCHHHHHHHHH-TBSCEEEEEE
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-HcCCccEEEE
Confidence            446778899999999999999999 9999965444

>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.93  E-value=0.15  Score=31.39  Aligned_cols=27  Identities=19%  Similarity=0.205  Sum_probs=25.0

Q ss_pred             EEEEecccceeehhhhhhhhccccccee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAF   58 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vl   58 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.
T Consensus        10 ~lfVgnLp~~~te~~L~~~F~-~~G~i~   36 (114)
T 2dnl_A           10 KVFVGGLPPDIDEDEITASFR-RFGPLV   36 (114)
T ss_dssp             CEEEECCCTTCCHHHHHHHTT-TTCCCC
T ss_pred             EEEEcCCCCCCCHHHHHHHHH-hcCCEE
Confidence            467899999999999999999 999997

>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.88  E-value=0.37  Score=29.02  Aligned_cols=29  Identities=21%  Similarity=0.206  Sum_probs=26.1

Q ss_pred             EEEEEEecccceeehhhhhhhhccccccee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAF   58 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vl   58 (80)
                      --.|.|.|+-+-+|-+-|..+|+ +||.|.
T Consensus        15 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~   43 (113)
T 2cpe_A           15 NSAIYVQGLNDSVTLDDLADFFK-QCGVVK   43 (113)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHHT-TTSCBC
T ss_pred             CCEEEEcCCCCCCCHHHHHHHHH-hcCCEe
Confidence            34677899999999999999999 999997

>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A

Probab=89.76  E-value=0.21  Score=32.16  Aligned_cols=39  Identities=18%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             CCCcEEEEEEecccceeeh-----hhhhhhhcccccceeeeceeecc
Q psy9172          25 GPNTVLRVIIEHMLYPITL-----DVLYQFDNYKFGHAFSTSLAMPR   66 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTl-----dVLhqiFs~~fG~Vlrq~~a~~~   66 (80)
                      .|++||.  +.||+-|-.+     |=|...|+ +||.|.+=.+..+.
T Consensus        18 ~ps~vl~--L~Nm~~~~el~ddleedl~eef~-k~G~V~~v~I~~~~   61 (118)
T 3ue2_A           18 QESTVMV--LRNMVDPKDIDDDLEGEVTEECG-KFGAVNRVIIYQEK   61 (118)
T ss_dssp             HSCCEEE--EESCSCGGGCCTTHHHHHHHHHT-TTSCEEEEEEEEEE
T ss_pred             CCCCEEE--EECCCCHHHHHHHHHHHHHHHHh-ccCCEeEEEEeecC
Confidence            3677876  6899877443     45779999 99999866665554

>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A

Probab=89.73  E-value=0.23  Score=31.71  Aligned_cols=33  Identities=15%  Similarity=0.018  Sum_probs=27.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -.|.|.|+-+-+|-+-|..+|+ +||.|.+-.+.
T Consensus        47 ~~l~V~nLp~~~te~~L~~~F~-~~G~I~~v~i~   79 (129)
T 2kxn_B           47 CCLGVFGLSLYTTERDLREVFS-KYGPIADVSIV   79 (129)
T ss_dssp             SCBCEETCTTSCCHHHHHHHHT-TTSCEEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEE
Confidence            3466899999999999999999 99999765444

>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A

Probab=89.55  E-value=0.42  Score=28.43  Aligned_cols=32  Identities=6%  Similarity=0.164  Sum_probs=27.0

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS   61 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~   61 (80)
                      --.|.|.|+-+.+|-+-|..+|+ +||.|.+-.
T Consensus        29 ~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~   60 (107)
T 3ulh_A           29 GGKLLVSNLDFGVSDADIQELFA-EFGTLKKAA   60 (107)
T ss_dssp             SEEEEEESCCTTCCHHHHHHHHH-TTSCEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEE
Confidence            44677889999999999999999 999995433

>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=89.48  E-value=0.18  Score=30.80  Aligned_cols=31  Identities=13%  Similarity=0.215  Sum_probs=26.6

Q ss_pred             EEEEecccceeehhhhh---hhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLY---QFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLh---qiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+.+|-+-|.   .+|+ +||.|.+-.+
T Consensus        17 ~l~V~nLp~~~~~~~l~~~~~~F~-~~G~i~~v~i   50 (111)
T 2cpi_A           17 LVFVVGLSQRLADPEVLKRPEYFG-KFGKIHKVVI   50 (111)
T ss_dssp             CEEEEEECTTTCCHHHHHSTTTTT-TTSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHHhh-ccCCEEEEEE
Confidence            46789999999999999   9999 9999976544

>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A

Probab=89.31  E-value=0.21  Score=29.02  Aligned_cols=33  Identities=9%  Similarity=0.209  Sum_probs=27.9

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      -+|-|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~~~~~   48 (95)
T 2ek1_A           16 TVIKVQNMPFTVSIDEILDFFY-GYQVIPGSVCL   48 (95)
T ss_dssp             EEEEEECCCTTCCHHHHHHHTT-TSCBCTTCCEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCccceEEE
Confidence            5677899999999999999999 99998754433

>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=89.26  E-value=0.37  Score=29.41  Aligned_cols=35  Identities=14%  Similarity=0.182  Sum_probs=28.8

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      -.|-|.|+-|.+|-+-|...|+ +||.+   ++.+++++
T Consensus        16 ~~l~V~nLp~~~te~~l~~~F~-~~G~~---~v~i~~d~   50 (102)
T 1wez_A           16 HCVHMRGLPYRATENDIYNFFS-PLNPM---RVHIEIGP   50 (102)
T ss_dssp             CEEEEESCCTTCCHHHHHHSSC-SCCCS---EEEEEESS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-HcCce---EEEEEECC
Confidence            4567899999999999999999 99955   46666665

>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B

Probab=89.23  E-value=0.41  Score=28.91  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=26.6

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        10 ~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v~i   40 (115)
T 3lqv_A           10 ILYIRNLPYKITAEEMYDIFG-KYGPIRQIRV   40 (115)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            567899999999999999999 9999975433

>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=89.20  E-value=0.23  Score=29.20  Aligned_cols=27  Identities=4%  Similarity=0.032  Sum_probs=24.7

Q ss_pred             EEEEecccceeehhhhhhhhccccccee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAF   58 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vl   58 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.
T Consensus        11 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~   37 (99)
T 2div_A           11 SLWMGDLEPYMDENFISRAFA-TMGETV   37 (99)
T ss_dssp             EEEECSCCTTCCHHHHHHHHH-HTTCCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HhCCcc
Confidence            467899999999999999999 999986

>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C

Probab=89.17  E-value=0.35  Score=30.07  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=26.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus         5 ~l~v~nLp~~~t~~~l~~~F~-~~G~i~~v~i~   36 (167)
T 2cjk_A            5 KMFIGGLNWDTTEDNLREYFG-KYGTVTDLKIM   36 (167)
T ss_dssp             EEEECSCCTTCCHHHHHHHHT-TTCCEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE
Confidence            466789999999999999999 99999754443

>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1

Probab=89.13  E-value=0.38  Score=28.56  Aligned_cols=32  Identities=9%  Similarity=0.036  Sum_probs=26.9

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        24 ~~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i   55 (106)
T 1p27_B           24 WILFVTGVHEEATEEDIHDKFA-EYGEIKNIHL   55 (106)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHh-ccCCeEEEEE
Confidence            3566889999999999999999 9999965443

>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...

Probab=89.07  E-value=0.28  Score=28.64  Aligned_cols=30  Identities=20%  Similarity=0.281  Sum_probs=25.3

Q ss_pred             EEEEecccceeehhhhh----hhhcccccceeeec
Q psy9172          31 RVIIEHMLYPITLDVLY----QFDNYKFGHAFSTS   61 (80)
Q Consensus        31 rviIeN~~YPVTldVLh----qiFs~~fG~Vlrq~   61 (80)
                      .|-|.|+-+.+|-+-|.    .+|+ +||.|.+-.
T Consensus        10 ~l~V~nLp~~~~~~~l~~~l~~~f~-~~G~i~~v~   43 (97)
T 1nu4_A           10 TIYINNLNEKIKKDELKKSLHAIFS-RFGQILDIL   43 (97)
T ss_dssp             EEEEESCCTTSCHHHHHHHHHHHHG-GGSCEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHH-hCCCEEEEE
Confidence            45678999999999888    9999 999997543

>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A

Probab=89.05  E-value=0.4  Score=30.68  Aligned_cols=44  Identities=18%  Similarity=0.209  Sum_probs=30.5

Q ss_pred             CCCCcEEEEEEecccceee----------hhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          24 GGPNTVLRVIIEHMLYPIT----------LDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVT----------ldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .-|++|  |.+.||+-|-.          .|=|...|+ +||.|.+  +.++.+...||
T Consensus         4 p~ps~v--v~L~Nm~~~~e~~d~~~~~el~edl~~~f~-kfG~V~~--v~i~~~~~~G~   57 (114)
T 3s6e_A            4 PLATQC--FQLSNMFNPQTEEEVGWDTEIKDDVIEECN-KHGGVIH--IYVDKNSAQGN   57 (114)
T ss_dssp             CCCCSE--EEEESSCCTTTCCSTTHHHHHHHHHHHHHT-TTTCCSE--EEECTTCTTCC
T ss_pred             CCCCcE--EEEECCCChHHccChhHHHHHHHHHHHHHh-ccCCEEE--EEEecCCCcEE
Confidence            356777  45789986643          224578999 9999974  55666666676

>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.01  E-value=0.18  Score=29.54  Aligned_cols=39  Identities=15%  Similarity=0.170  Sum_probs=29.9

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeecccccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELA   70 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~   70 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|.+-+ .++.++..
T Consensus        16 ~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~-~i~~~~~~   54 (96)
T 2e44_A           16 RKLQIRNIPPHLQWEVLDSLLV-QYGVVESCE-QVNTDSET   54 (96)
T ss_dssp             CCEEEEEECSSSCHHHHHHHHH-HHSCEEEEE-EECCSSSS
T ss_pred             CEEEEEcCCCCCCHHHHHHHHH-hcCCeEEEE-EeecCCCC
Confidence            3577899999999999999999 999997532 24444443

>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}

Probab=89.00  E-value=0.31  Score=29.17  Aligned_cols=35  Identities=14%  Similarity=0.370  Sum_probs=27.6

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      =+|-|.|+-+-+|-+-|..+|+ +|| |.+  +-+..++
T Consensus        20 ~~l~V~nLp~~~t~~~l~~~F~-~~G-i~~--v~i~~~~   54 (100)
T 2j76_E           20 YTAFLGNLPYDVTEESIKEFFR-GLN-ISA--VRLPREP   54 (100)
T ss_dssp             CEEEESCCSSCCSSSHHHHHSC-SSC-EEE--EECSCCT
T ss_pred             cEEEEeCCCCCCCHHHHHHHHH-hcC-CeE--EEEEecC
Confidence            4567899999999999999999 999 764  4444443

>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A

Probab=88.93  E-value=0.27  Score=29.34  Aligned_cols=31  Identities=13%  Similarity=0.214  Sum_probs=26.6

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeec
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTS   61 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~   61 (80)
                      -.|.|.|+-+.+|-+-|..+|+ +||.|..-.
T Consensus        12 ~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~   42 (103)
T 2dgu_A           12 KVLFVRNLANTVTEEILEKAFS-QFGKLERVK   42 (103)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHH-HHSCEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCEEEEE
Confidence            4566899999999999999999 999997544

>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A

Probab=88.88  E-value=0.3  Score=29.51  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=27.3

Q ss_pred             EEEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -+|-|.|+-+. +|-+-|..+|+ +||.|..-.+
T Consensus        28 ~~l~V~nl~~~~~t~~~l~~~F~-~~G~v~~v~i   60 (110)
T 1wf1_A           28 SRVFIGNLNTALVKKSDVETIFS-KYGRVAGCSV   60 (110)
T ss_dssp             SEEEECSCCCSSCCHHHHHHHHG-GGSCCSEEEE
T ss_pred             cEEEEeCCCcccCCHHHHHHHHH-hCCCeEEEEE
Confidence            36778999988 99999999999 9999975444

>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.87  E-value=0.45  Score=28.10  Aligned_cols=27  Identities=15%  Similarity=0.208  Sum_probs=24.1

Q ss_pred             EEEEEecccceeehhhhhhhhcccccce
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHA   57 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~V   57 (80)
                      -.|.|.|+-+-+|-+-|..+|+ +||.|
T Consensus        16 ~~l~V~nLp~~~t~~~l~~~F~-~~g~v   42 (101)
T 2fc9_A           16 KTLVLSNLSYSATEETLQEVFE-KATFI   42 (101)
T ss_dssp             SEEEEESCCTTCCHHHHHHHCS-SCSEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hCCEE
Confidence            3456789999999999999999 99998

>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.81  E-value=0.26  Score=29.73  Aligned_cols=39  Identities=15%  Similarity=0.129  Sum_probs=29.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .|.|.|+-+-+|-+-|..+|+ +||.|.+-.  +..++--||
T Consensus        27 ~l~V~nl~~~~t~~~l~~~F~-~~G~i~~v~--i~~~~g~af   65 (109)
T 1x4g_A           27 TVYCGGIASGLTDQLMRQTFS-PFGQIMEIR--VFPEKGYSF   65 (109)
T ss_dssp             EEEEECCSSCCCHHHHHHHHH-HHSCEEEEE--EETTTTEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeEEEE--EeCCCCEEE
Confidence            567799999999999999999 999997543  444443333

>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=88.79  E-value=0.78  Score=27.19  Aligned_cols=38  Identities=8%  Similarity=0.113  Sum_probs=29.1

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .+--.|-|.|+-+-+|-+-|..+|+ +|| |..  +-++.++
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~g-i~~--v~i~~~~   50 (103)
T 2dng_A           13 EPPYTAYVGNLPFNTVQGDIDAIFK-DLS-IRS--VRLVRDK   50 (103)
T ss_dssp             SSCEEEEEESCCTTCCHHHHHHHTT-TSC-EEE--EEEEECS
T ss_pred             CCCeEEEEeCCCCCCCHHHHHHHHH-hCC-ceE--EEEeecC
Confidence            3445677899999999999999999 998 654  4444443

>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A

Probab=88.72  E-value=0.36  Score=30.02  Aligned_cols=32  Identities=6%  Similarity=0.271  Sum_probs=27.4

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -+|-|.|+=+-+|-+-|...|+ +||.|..-.+
T Consensus         4 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i   35 (175)
T 3nmr_A            4 IKMFVGQVPRTWSEKDLRELFE-QYGAVYEINV   35 (175)
T ss_dssp             EEEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred             eEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEE
Confidence            4678999999999999999999 9999975443

>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.59  E-value=0.59  Score=27.10  Aligned_cols=34  Identities=9%  Similarity=0.264  Sum_probs=28.5

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +-=+|.|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         7 ~~~~l~V~nlp~~~t~~~l~~~F~-~~G~i~~v~~   40 (90)
T 2dnq_A            7 GMVKLFIGNLPREATEQEIRSLFE-QYGKVLECDI   40 (90)
T ss_dssp             CCEEEEEESCCSSCCHHHHHHHHH-TSSCEEEEEE
T ss_pred             CCeEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEE
Confidence            345677899999999999999999 9999975444

>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.48  E-value=0.42  Score=28.21  Aligned_cols=29  Identities=17%  Similarity=0.173  Sum_probs=23.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|  +.+|-+-|..+|+ +||.|.+-.+
T Consensus        17 ~l~V~n--~~~t~~~l~~~F~-~~G~i~~v~i   45 (97)
T 1x5p_A           17 TLYVYG--EDMTPTLLRGAFS-PFGNIIDLSM   45 (97)
T ss_dssp             EEEEEC--SSCCHHHHHHHHT-TTSCEEEEEE
T ss_pred             EEEEcC--CCCCHHHHHHHHh-hCCCEEEEEe
Confidence            455678  4999999999999 9999965433

>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=88.46  E-value=0.34  Score=28.71  Aligned_cols=32  Identities=13%  Similarity=0.237  Sum_probs=27.1

Q ss_pred             EEEEEecccceeehhhhhhhhccc-ccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYK-FGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~-fG~Vlrq~~   62 (80)
                      -+|-|.|+-+.+|-+-|..+|+ + ||.|.+-.+
T Consensus        10 ~~l~V~nLp~~~t~~~l~~~F~-~~~G~v~~v~i   42 (104)
T 2dhg_A           10 YSLFVGDLTPDVDDGMLYEFFV-KVYPSCRGGKV   42 (104)
T ss_dssp             CCEEEECCCTTCCHHHHHHHHH-HHCTTEEEEEE
T ss_pred             cEEEEeCCCCCCCHHHHHHHHH-HhCCCeEEEEE
Confidence            4567899999999999999999 9 999965443

>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}

Probab=88.38  E-value=0.21  Score=31.57  Aligned_cols=33  Identities=18%  Similarity=0.251  Sum_probs=27.4

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      +.|++  .|-|.|+-+-+|-+-|..+|+ +||.|.+
T Consensus        42 ~~~~~--~l~V~nLp~~~te~~L~~~F~-~~G~i~~   74 (143)
T 3egn_A           42 GEPNC--RIYVKNLAKHVQEKDLKYIFG-RYVDFSS   74 (143)
T ss_dssp             CSCCS--EEEEEEECTTCCHHHHHHHHG-GGCCTTC
T ss_pred             CCCCC--EEEEeCCCCCCCHHHHHHHHH-HhCCccc
Confidence            34443  567899999999999999999 9998864

>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.36  E-value=0.69  Score=27.83  Aligned_cols=36  Identities=14%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      -.|-|.|+-|.+|-+-|...|+ +||.|.. .+.++.+
T Consensus        16 ~~l~V~nLp~~~te~~l~~~F~-~~G~v~~-~v~i~~~   51 (104)
T 1wg5_A           16 GFVRLRGLPFGCSKEEIVQFFS-GLEIVPN-GMTLPVD   51 (104)
T ss_dssp             CEEEEESCCTTCCHHHHHHHTT-TCCEEEE-EEECCBC
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCcce-eEEEEEC
Confidence            4567899999999999999999 9999863 2445544

>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}

Probab=88.36  E-value=0.37  Score=29.62  Aligned_cols=31  Identities=19%  Similarity=0.171  Sum_probs=26.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+-+|-+-|...|+ +||.|.+-.+
T Consensus         2 ~l~V~nlp~~~t~~~l~~~f~-~~G~i~~v~i   32 (166)
T 3md3_A            2 VLYVGNLDKAITEDILKQYFQ-VGGPIANIKI   32 (166)
T ss_dssp             EEEEEEEETTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEECCCCCcCCHHHHHHHHH-hcCCeEEEEE
Confidence            467899989999999999999 9999975443

>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.36  E-value=0.37  Score=29.73  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|-|.|+-+-+|-+-|...|+ +||.|..  +-+++++
T Consensus        13 ~lfV~~Lp~~~te~~L~~~F~-~~G~v~~--v~i~~d~   47 (103)
T 1s79_A           13 SVYIKGFPTDATLDDIKEWLE-DKGQVLN--IQMRRTL   47 (103)
T ss_dssp             CEEEECCCTTCCHHHHHHHHH-TSSCEEE--EEEECCC
T ss_pred             EEEEECCCCCCCHHHHHHHHh-hcCCEEE--EEEEECC
Confidence            356789999999999999999 9999964  5556554

>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A

Probab=88.19  E-value=0.44  Score=30.35  Aligned_cols=37  Identities=14%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             CCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          26 PNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        26 pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +.+--.|-|.|+-+-+|-+-|..+|+ +||.|..-.+.
T Consensus        10 ~~~~~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~   46 (196)
T 1l3k_A           10 PEQLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVM   46 (196)
T ss_dssp             CGGGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHH-hCCCEEEEEEE
Confidence            33444677899999999999999999 99999754443

>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=88.07  E-value=0.24  Score=30.70  Aligned_cols=30  Identities=10%  Similarity=0.075  Sum_probs=26.7

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      --.|-|.|+-|.+|-+-|..+|+ +||.|..
T Consensus        25 ~~~l~V~nLp~~~te~~l~~~F~-~~G~v~~   54 (124)
T 1wel_A           25 GFCVYLKGLPFEAENKHVIDFFK-KLDIVED   54 (124)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHSC-SSCBCTT
T ss_pred             CcEEEEeCCCCCCCHHHHHHHHH-hcCCccc
Confidence            35678999999999999999999 9999864

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=88.06  E-value=0.41  Score=33.09  Aligned_cols=58  Identities=10%  Similarity=0.086  Sum_probs=38.4

Q ss_pred             HHHHHHHHHhhhhhcCCC----CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172           4 ASAQAALQAAQALTGQTD----TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus         4 ~~aqaALqa~n~v~~~~~----~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      ..|+.|+..++.....+.    ....++.  .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+..
T Consensus        69 ~~A~~A~~~l~g~~i~g~~l~v~~a~~~~--~l~v~nl~~~~t~~~l~~~F~-~~G~i~~v~i~~  130 (261)
T 3sde_A           69 TLAEIAKAELDGTILKSRPLRIRFATHGA--ALTVKNLSPVVSNELLEQAFS-QFGPVEKAVVVV  130 (261)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCSS--EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             HHHHHHHHHcCCcEECCceeEeeecccCC--cccccCCCCCCCHHHHHHHHH-hcCCeEEEEeee
Confidence            467778877763222110    0112222  477899999999999999999 999997654443

>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A

Probab=87.97  E-value=0.38  Score=32.96  Aligned_cols=40  Identities=20%  Similarity=0.327  Sum_probs=29.2

Q ss_pred             EEEEecccceeehhh----hhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDV----LYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldV----LhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|.|.|+-+.+|-|-    |+.+|+ +||.|.+-++. ...++-||
T Consensus        11 ~l~V~nlp~~~~~~~l~~~L~~~F~-~~G~i~~v~~~-~~~~~~g~   54 (282)
T 3pgw_A           11 TIYINNLNEKIKKDELKKSLYAIFS-QFGQILDILVS-RSLKMRGQ   54 (282)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHh-ccCCeEEEEEc-CCCCcceE
Confidence            567899999999999    669999 99999764332 23344443

>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.85  E-value=0.44  Score=27.98  Aligned_cols=30  Identities=17%  Similarity=0.161  Sum_probs=26.8

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      .-+|-|.|+-+.+|-+-|..+|+ +||.|.+
T Consensus         8 ~~~l~V~nl~~~~t~~~l~~~F~-~~G~v~~   37 (94)
T 2e5g_A            8 LRSVFVSGFPRGVDSAQLSEYFL-AFGPVAS   37 (94)
T ss_dssp             CCEEEEECCCTTCCHHHHHHHGG-GTSCEEE
T ss_pred             CCEEEEECCCCCCCHHHHHHHHH-hcCCeEE
Confidence            34678999999999999999999 9999975

>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A

Probab=87.84  E-value=0.41  Score=30.39  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=33.9

Q ss_pred             CCCcEEEEEEecccceeehhhhhhhhccccc-ceeeeceeeccccccCc
Q psy9172          25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFG-HAFSTSLAMPRDELAGF   72 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTldVLhqiFs~~fG-~Vlrq~~a~~~~~~~~~   72 (80)
                      .|.+--+|.|.|+-|-+|-+-|..+|+ +|| .|..-.+  +.+++-||
T Consensus        24 ~p~~~~~l~VgnLp~~~te~dL~~~F~-~~G~~v~~v~i--~~~~~rGf   69 (111)
T 2jvr_A           24 LPAKRYRITMKNLPEGCSWQDLKDLAR-ENSLETTFSSV--NTRDFDGT   69 (111)
T ss_dssp             -CCCCEEEEEECSSCCCCHHHHHHHHH-HHTCCCSEEEC--SSCSSSCC
T ss_pred             CCCCCCEEEEECCCCCCCHHHHHHHHH-HhCCeeEEEEE--EcCCCCCE
Confidence            344557899999999999999999999 999 7764333  33445565

>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1

Probab=87.80  E-value=0.3  Score=31.50  Aligned_cols=36  Identities=8%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             CCCCcEEEEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172          24 GGPNTVLRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      ..|+++|.  |.|+-|- +|-+-|..+|+ +||.|.+-.+
T Consensus        22 ~~p~~~l~--V~NLp~~~~te~~L~~lF~-~fG~V~~v~i   58 (112)
T 1x4f_A           22 QELGRVIH--LSNLPHSGYSDSAVLKLAE-PYGKIKNYIL   58 (112)
T ss_dssp             SCCCCEEE--EESCCCSSCCSHHHHTTTT-TTSCCSEEEE
T ss_pred             CCCCCEEE--EeCCCCccCCHHHHHHHHH-hcCCEEEEEE
Confidence            45666554  6899997 99999999999 9999976544

>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}

Probab=87.73  E-value=0.39  Score=31.06  Aligned_cols=46  Identities=20%  Similarity=0.323  Sum_probs=30.4

Q ss_pred             CCCCCcEEEEEEecccceeehhh----hhhhhcccccceeeeceeeccccccCc
Q psy9172          23 QGGPNTVLRVIIEHMLYPITLDV----LYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        23 ~~~pn~VLrviIeN~~YPVTldV----LhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ...|++.  |-|.|+-+-++-|-    |+.+|+ +||.|.+=.+ +...++-||
T Consensus        25 ~~~p~~~--LfV~nL~~~~~e~~L~~~L~~~F~-~~G~I~~v~i-~~~~~~rG~   74 (127)
T 2a3j_A           25 HTEPSQV--VLITNINPEVPKEKLQALLYALAS-SQGDILDIVV-DLSDDNSGK   74 (127)
T ss_dssp             CCSCCSE--EEEESCCTTSCHHHHHHHHHHHHH-HHSCEEEEEE-CCCCSSCCC
T ss_pred             CCCCCCE--EEEeCCCCCCCHHHHHHHHHHHhc-cCCCeEEEEe-ccCCCcCCE
Confidence            3455554  55789988899875    568999 9999965222 222345555

>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A

Probab=87.63  E-value=0.54  Score=28.17  Aligned_cols=31  Identities=16%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             EEEEecccc-eeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+ -+|-+-|..+|+ +||.|.+-.+
T Consensus        24 ~l~V~nLp~~~~t~~~L~~~F~-~~G~v~~v~i   55 (97)
T 2xnq_A           24 RLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINI   55 (97)
T ss_dssp             EEEEESCCSSCCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEE
Confidence            466789988 899999999999 9999976444

>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}

Probab=87.44  E-value=0.51  Score=29.23  Aligned_cols=35  Identities=14%  Similarity=0.150  Sum_probs=28.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|-|.|+-+-+|-+-|.++|+ +||.|.+  +-+..++
T Consensus         9 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~--v~i~~~~   43 (116)
T 2fy1_A            9 KLFIGGLNRETNEKMLKAVFG-KHGPISE--VLLIKDR   43 (116)
T ss_dssp             EEEEECCTTTCCHHHHHHHHH-TSSCCSE--EEEECST
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCEEE--EEEEECC
Confidence            567899999999999999999 9999965  4444443

>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A

Probab=87.35  E-value=0.37  Score=30.63  Aligned_cols=37  Identities=14%  Similarity=0.011  Sum_probs=29.6

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeeceeeccc
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      +--+|-|.|+-+.+|-+-|..+|+ +||.|.+  +-++.+
T Consensus        72 ~~~~l~V~nl~~~~t~~~l~~~F~-~~G~i~~--v~i~~~  108 (150)
T 2i2y_A           72 LDCKVYVGNLGNNGNKTELERAFG-YYGPLRS--VWVARN  108 (150)
T ss_dssp             TSCEEEEESCCSCCSCHHHHHHHH-HHSCEEE--EEECSS
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-hhCCEEE--EEEeeC
Confidence            344677899999999999999999 9999964  344444

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=87.32  E-value=0.49  Score=32.55  Aligned_cols=35  Identities=11%  Similarity=0.278  Sum_probs=28.9

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      --.|.|.|+=+.+|-+-|..+|+ +||.|..=.+..
T Consensus        41 ~~~l~V~nLp~~~t~~~l~~~F~-~~G~i~~v~i~~   75 (292)
T 2ghp_A           41 LTTVLVKNLPKSYNQNKVYKYFK-HCGPIIHVDVAD   75 (292)
T ss_dssp             -CEEEEEEECTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-hcCCeEEEEEEE
Confidence            44678899999999999999999 999997655544

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C

Probab=87.25  E-value=0.45  Score=33.22  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             EEEEecccceeehhhhhhhhccccc--ceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFG--HAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG--~Vlrq~~a~   64 (80)
                      .|-|.|+-|-+|-+-|..+|+ +||  .|.+-++..
T Consensus        70 ~lfVgnL~~~~te~~L~~~F~-~~G~~~v~~v~i~~  104 (229)
T 3q2s_C           70 ALYIGNLTWWTTDEDLTEAVH-SLGVNDILEIKFFE  104 (229)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTTCCCEEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HHCCcceEEEEEEe
Confidence            488999999999999999999 999  886544433

>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1

Probab=87.23  E-value=0.58  Score=27.34  Aligned_cols=32  Identities=9%  Similarity=0.224  Sum_probs=27.0

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -+|-|.|+-+.+|-+-|..+|+ +||.|..-.+
T Consensus        16 ~~l~v~nLp~~~t~~~l~~~F~-~~G~v~~~~~   47 (98)
T 2cqp_A           16 TIIKVQNMPFTVSIDEILDFFY-GYQVIPGSVC   47 (98)
T ss_dssp             EEEEEESCCTTCCHHHHHHHTT-TSCCCTTTCE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-HcCCccceEE
Confidence            4677899999999999999999 9999964333

>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}

Probab=87.19  E-value=0.49  Score=27.95  Aligned_cols=32  Identities=16%  Similarity=0.427  Sum_probs=27.1

Q ss_pred             EEEEEecccc-eeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -+|-|.|+-+ -+|-+-|..+|+ +||.|..-.+
T Consensus        11 ~~l~V~nlp~~~~t~~~l~~~F~-~~G~v~~v~i   43 (96)
T 2kvi_A           11 SRLFIGNLPLKNVSKEDLFRIFS-PYGHIMQINI   43 (96)
T ss_dssp             EEEEEESSTTSCCCHHHHHHHHT-TTCCCCEEEE
T ss_pred             CEEEEeCCCcccCCHHHHHHHHH-hcCCEEEEEE
Confidence            3567899998 999999999999 9999976443

>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}

Probab=86.99  E-value=1.1  Score=27.49  Aligned_cols=39  Identities=13%  Similarity=0.238  Sum_probs=30.4

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .+==+|.|.|+-+-+|-+-|..+|+ +||.|.+-  -++.++
T Consensus        33 ~~~~~l~V~nlp~~~t~~~l~~~F~-~~G~v~~v--~i~~~~   71 (124)
T 2kt5_A           33 ETGAKLLVSNLDFGVSDADIQELFA-EFGTLKKA--AVDYDR   71 (124)
T ss_dssp             SSCEEEEEESCCSSCCHHHHHHHHH-TTSCCSEE--EEECCS
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHH-hcCCeeEE--EEEECC
Confidence            3345678899999999999999999 99999654  444443

>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*

Probab=86.91  E-value=0.4  Score=36.87  Aligned_cols=33  Identities=12%  Similarity=0.110  Sum_probs=28.1

Q ss_pred             EEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          29 VLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        29 VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .-.|.|.|+-+.||-+-|..+|+ +||.|..-.+
T Consensus       102 ~~~lfV~nL~~~~te~~L~~~F~-~~G~I~~v~i  134 (437)
T 3pgw_S          102 FKTLFVARVNYDTTESKLRREFE-VYGPIKRIHM  134 (437)
T ss_pred             CCEEEEeCCCCCCCHHHHHHHHH-HcCCeeEEEe
Confidence            34678999999999999999999 9999975444

>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*

Probab=86.66  E-value=0.5  Score=36.02  Aligned_cols=45  Identities=18%  Similarity=0.225  Sum_probs=34.2

Q ss_pred             CCCCcEEEEEEec--ccceeehhhhhhhhcccccceeeeceeeccccccCcc
Q psy9172          24 GGPNTVLRVIIEH--MLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFR   73 (80)
Q Consensus        24 ~~pn~VLrviIeN--~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~~   73 (80)
                      ..|+..|  -|-|  +-|-+|=|-|.++|+ +||.|.  ++.|+..|.-||-
T Consensus        15 ~~ps~~l--~VgN~gl~~~~te~~L~~~F~-~~G~V~--~v~~~~~kgfaFV   61 (345)
T 3tht_A           15 SYATQSL--VVANGGLGNGVSRNQLLPVLE-KCGLVD--ALLMPPNKPYSFA   61 (345)
T ss_dssp             SSCCSEE--EEETCSGGGTCCHHHHHHHHH-TTSCEE--EEECCTTCSEEEE
T ss_pred             CCCCCEE--EEEcCCCCCCCCHHHHHHHHH-hcCCeE--EEEEeCCCCEEEE
Confidence            4566554  4567  568999999999999 999995  4777777766653

>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A

Probab=86.41  E-value=0.64  Score=28.77  Aligned_cols=32  Identities=16%  Similarity=0.203  Sum_probs=26.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|.|.|+=+-+|-+-|..+|+ +||.|.+-.+.
T Consensus         5 ~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~i~   36 (168)
T 1b7f_A            5 NLIVNYLPQDMTDRELYALFR-AIGPINTCRIM   36 (168)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hcCCeeEEEEE
Confidence            466789988999999999999 99999754443

>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A

Probab=86.29  E-value=0.7  Score=29.86  Aligned_cols=31  Identities=26%  Similarity=0.347  Sum_probs=26.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|.|.|+-+-+|-+-|..+|+ +||.|..-.+
T Consensus        30 ~l~V~nLp~~~t~~~l~~~f~-~~G~i~~v~i   60 (216)
T 2qfj_A           30 RVYVGSIYYELGEDTIRQAFA-PFGPIKSIDM   60 (216)
T ss_dssp             EEEEECCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hCCCEEEEEE
Confidence            577899999999999999999 9999975443

>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A

Probab=86.15  E-value=0.65  Score=28.50  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=26.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         4 ~l~v~nlp~~~~~~~l~~~f~-~~G~i~~v~~   34 (167)
T 1fxl_A            4 NLIVNYLPQNMTQEEFRSLFG-SIGEIESCKL   34 (167)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred             eEEEcCCCCCCCHHHHHHHHH-hcCCeEEEEE
Confidence            366789989999999999999 9999965443

>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}

Probab=86.07  E-value=0.53  Score=31.12  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=27.6

Q ss_pred             EEEEEecccceeehhhhhhhhccccc--ceeeecee
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFG--HAFSTSLA   63 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG--~Vlrq~~a   63 (80)
                      -.|-|.|+-|-+|-+-|..+|+ +||  .|..-++.
T Consensus        56 ~~lfVgnLp~~~te~~L~~~F~-~~G~i~v~~v~i~   90 (156)
T 3n9u_C           56 AAVYVGSFSWWTTDQQLIQVIR-SIGVYDVVELKFA   90 (156)
T ss_dssp             CEEEEECCCTTCCHHHHHHHHH-HTTCCCEEEEEEE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-HHCCccEEEEEEE
Confidence            3688999999999999999999 999  77654443

>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=85.88  E-value=0.51  Score=27.51  Aligned_cols=27  Identities=15%  Similarity=0.097  Sum_probs=24.5

Q ss_pred             EEEEecccceeehhhhhhhhccccccee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAF   58 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vl   58 (80)
                      .|-|.|+-+.+|-+-|..+|+ +||.|.
T Consensus        18 ~l~V~nL~~~~t~~~l~~~F~-~~g~v~   44 (96)
T 1fjc_A           18 TLLAKNLSFNITEDELKEVFE-DALEIR   44 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHC-SEEEEC
T ss_pred             EEEEeCCCCCCCHHHHHHHHh-hCCcEE
Confidence            566899999999999999999 999985

>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=85.70  E-value=1  Score=27.54  Aligned_cols=40  Identities=15%  Similarity=0.107  Sum_probs=30.2

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .+--.|-|.|+-|-+|-+-|..+|+ +||.|. .++-++.++
T Consensus        13 ~~~~~l~V~nLp~~~t~~~l~~~F~-~~g~v~-~~v~i~~d~   52 (114)
T 2cpy_A           13 SAKVCAHITNIPFSITKMDVLQFLE-GIPVDE-NAVHVLVDN   52 (114)
T ss_dssp             SCCCEEEEESCCTTSCHHHHHHHTT-TSCCCS-TTEEECCCT
T ss_pred             CCccEEEEeCcCCcCCHHHHHHHHH-hCCCcC-CeEEEEECC
Confidence            3345578899999999999999999 999982 234455544

>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}

Probab=85.56  E-value=0.45  Score=30.46  Aligned_cols=30  Identities=13%  Similarity=0.112  Sum_probs=26.5

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeece
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +.|-|+-|-+|-+.|...|+ +||.|..=.+
T Consensus        10 L~VgNL~~~~te~~L~~lF~-q~G~V~~~~l   39 (89)
T 2wbr_A           10 LLLKNLTAQIDGPTLRTLCM-QHGPLVSFHP   39 (89)
T ss_dssp             EEEECCCTTCCCHHHHHHHH-HHSCEEEEEE
T ss_pred             EEEeCCCccCCHHHHHHHHH-hhCCEEEEEE
Confidence            44899999999999999999 9999976554

>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}

Probab=85.68  E-value=0.16  Score=31.02  Aligned_cols=28  Identities=7%  Similarity=0.221  Sum_probs=25.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      +|-|.|+-+.+|-+-|..+|+ +||.|..
T Consensus         9 ~l~V~nLp~~~t~~~l~~~F~-~~G~i~~   36 (116)
T 2lcw_A            9 TIFVQGLGENVTIESVADYFK-QIGIIKT   36 (116)
Confidence            567899999999999999999 9999965

>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.27  E-value=0.47  Score=27.51  Aligned_cols=31  Identities=10%  Similarity=0.183  Sum_probs=26.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+.+|-+-|..+|+ +||.|.+-.+
T Consensus        11 ~l~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~   41 (90)
T 2dnp_A           11 KIFVGNVSAACTSQELRSLFE-RRGRVIECDV   41 (90)
T ss_dssp             CEEEESCCTTCCHHHHHHHHH-HHSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-cCCCEEEEEE
Confidence            467899999999999999999 9999865443

>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A

Probab=85.08  E-value=0.65  Score=28.48  Aligned_cols=32  Identities=13%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -.|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus        32 ~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~i   63 (108)
T 2jvo_A           32 TRLFVRPFPLDVQESELNEIFG-PFGPMKEVKI   63 (108)
T ss_dssp             SEEEECSSCTTCCHHHHHHHHT-TTSCCCEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            3566899999999999999999 9999975444

>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}

Probab=84.84  E-value=0.76  Score=27.79  Aligned_cols=40  Identities=8%  Similarity=0.102  Sum_probs=30.3

Q ss_pred             CcEEEEEEecccceeehhhhhhhhcccccc---eeeeceeeccccc
Q psy9172          27 NTVLRVIIEHMLYPITLDVLYQFDNYKFGH---AFSTSLAMPRDEL   69 (80)
Q Consensus        27 n~VLrviIeN~~YPVTldVLhqiFs~~fG~---Vlrq~~a~~~~~~   69 (80)
                      +.--+|-|.|+-|-+|-+-|...|+ +||.   |.  .+-++.++.
T Consensus         9 ~~~~~l~V~nLp~~~te~~l~~~F~-~~g~~~~v~--~v~i~~~~~   51 (107)
T 2lmi_A            9 DDVFLIRAQGLPWSCTMEDVLNFFS-DCRIRNGEN--GIHFLLNRD   51 (107)
T ss_dssp             SSCCEEEEECCCSSCCSHHHHHHTT-TSCBTTTTT--TEECCCCTT
T ss_pred             CCccEEEEeCCCCCCCHHHHHHHHH-hcCCcCCcc--eEEEEECCC
Confidence            3445677899999999999999999 9998   54  344455543

>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1

Probab=84.61  E-value=0.41  Score=28.25  Aligned_cols=31  Identities=10%  Similarity=-0.058  Sum_probs=27.7

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceee
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      +--.|-|.|+-+-+|-+-|..+|+ +||.|..
T Consensus        16 ~~~~l~V~nLp~~~t~~~l~~~F~-~~G~v~~   46 (101)
T 1fj7_A           16 TPFNLFIGNLNPNKSVAELKVAIS-ELFAKND   46 (101)
T ss_dssp             CSEEEEEECCCTTSCHHHHHHHHH-HHHHHHT
T ss_pred             CCCEEEEeCCCCCCCHHHHHHHHH-HhCCcce
Confidence            345788999999999999999999 9999876

>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=84.31  E-value=1.1  Score=26.41  Aligned_cols=33  Identities=9%  Similarity=0.156  Sum_probs=27.6

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccc--cceeeec
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKF--GHAFSTS   61 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~f--G~Vlrq~   61 (80)
                      +--+|-|.|+-+.+|-+-|..+|+ +|  |.|.+-+
T Consensus        14 ~~~~l~V~nLp~~~t~~~l~~~F~-~~g~g~v~~~~   48 (99)
T 2cpd_A           14 SVKILYVRNLMLSTSEEMIEKEFN-NIKPGAVERVK   48 (99)
T ss_dssp             CCCEEEEESCCTTCCHHHHHHHHH-TTSTTCEEEEE
T ss_pred             CcCEEEEeCCCCCCCHHHHHHHHH-hcCCcceEEEE
Confidence            345677899999999999999999 99  8887543

>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A

Probab=84.18  E-value=0.71  Score=31.73  Aligned_cols=31  Identities=13%  Similarity=0.240  Sum_probs=26.5

Q ss_pred             EEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|.|.|+-+. +|-+-|.++|+ +||.|.+-.+
T Consensus       212 ~l~v~nlp~~~~t~~~l~~~F~-~~G~v~~v~i  243 (292)
T 2ghp_A          212 EIMIRNLSTELLDENLLRESFE-GFGSIEKINI  243 (292)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHG-GGSCEEEEEC
T ss_pred             eEEEECCCcccCCHHHHHHHHh-ccCCeeEEEE
Confidence            4668899888 99999999999 9999976443

>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A

Probab=83.75  E-value=0.98  Score=28.38  Aligned_cols=39  Identities=13%  Similarity=0.070  Sum_probs=29.7

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      -.|.|.|+-+.+|-+-|.++|+ +||.|..-   ....++-||
T Consensus       100 ~~l~v~nlp~~~t~~~l~~~F~-~~g~v~~~---~~~~~~~g~  138 (175)
T 1fje_B          100 RTLLAKNLSFNITEDELKEVFE-DALEIRLV---SQDGKSKGI  138 (175)
T ss_dssp             GEEEEESCCSSCCHHHHHHHCT-TCSEEEEE---CSSSSCCSE
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCeEEEe---cCCCCCceE
Confidence            4577899999999999999999 99999632   333344554

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=83.09  E-value=1  Score=30.78  Aligned_cols=57  Identities=14%  Similarity=0.114  Sum_probs=38.3

Q ss_pred             HHHHHHHHHhhhhhcCCC----CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172           4 ASAQAALQAAQALTGQTD----TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus         4 ~~aqaALqa~n~v~~~~~----~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      ..|+.|++.++.....+.    ....++.  .|.|.|+-+.+|-+-|..+|+ +||.|.+-.+.
T Consensus        68 ~~A~~A~~~l~~~~~~g~~i~v~~~~~~~--~l~v~nlp~~~t~~~l~~~f~-~~G~i~~~~i~  128 (284)
T 3smz_A           68 EQAEAAINAFHQSRLRERELSVQLQPTDA--LLCVANLPPSLTQQQFEELVR-PFGSLERCFLV  128 (284)
T ss_dssp             HHHHHHHHHHTTCEETTEECEEEECCCSC--EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             HHHHHHHHHcCCCeeCCeEEEEEecCCCC--EEEEcCCCCcCCHHHHHHHHH-hcCCeeEEEEE
Confidence            467778877763222111    1112222  467899999999999999999 99999765543

>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}

Probab=82.97  E-value=0.64  Score=27.61  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=26.8

Q ss_pred             EEEecccceeehhhhhhhhccccc-ceeeeceeecccc
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFG-HAFSTSLAMPRDE   68 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG-~Vlrq~~a~~~~~   68 (80)
                      |.|.|+=+-+|=|-|...|+ +|| .|..  +-+++|+
T Consensus         4 i~v~nLp~~~te~~l~~~F~-~~G~~v~~--v~i~~d~   38 (91)
T 2lxi_A            4 VMLRMLPQAATEDDIRGQLQ-SHGVQARE--VRLMRNK   38 (91)
T ss_dssp             EEEETCCSSCCHHHHHHHHH-HHTCCCSB--CCSSSCS
T ss_pred             EEEeCCCCCCCHHHHHHHHH-HhCCEeEE--EEEEecC
Confidence            57899999999999999999 999 6753  3444443

>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B

Probab=82.90  E-value=0.76  Score=31.72  Aligned_cols=32  Identities=13%  Similarity=0.243  Sum_probs=27.4

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -+|.|.|+-+.+|-+-|..+|+ +||.|..-.+
T Consensus        23 ~~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i   54 (261)
T 3sde_A           23 CRLFVGNLPTDITEEDFKRLFE-RYGEPSEVFI   54 (261)
T ss_dssp             GEEEEESCCTTCCHHHHHHHTG-GGCCCSEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHH-hcCCEEEEEE
Confidence            3677899999999999999999 9999975443

>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}

Probab=82.52  E-value=0.94  Score=30.39  Aligned_cols=36  Identities=11%  Similarity=0.241  Sum_probs=29.3

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      -.|.|.|+-+-+|-+-|..+|+ +||.|..  +.++.++
T Consensus        89 ~~l~V~nLp~~~te~~L~~~F~-~~G~I~~--v~i~~d~  124 (177)
T 2f3j_A           89 AKLLVSNLDFGVSDADIQELFA-EFGTLKK--AAVDYDR  124 (177)
T ss_dssp             EEEEEECCCSCCCHHHHHHHHH-HTSCCSE--EEECCCT
T ss_pred             CEEEEeCCCCCCCHHHHHHHHH-hcCCeEE--EEEEECC
Confidence            4677899999999999999999 9999954  4455543

>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A

Probab=82.16  E-value=0.43  Score=30.46  Aligned_cols=26  Identities=19%  Similarity=0.286  Sum_probs=22.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccce
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHA   57 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~V   57 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|
T Consensus         6 ~l~V~nLp~~~te~~l~~~F~-~~g~i   31 (198)
T 2yh0_A            6 RLYVGNIPFGITEEAMMDFFN-AQMRL   31 (198)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-HHHHH
T ss_pred             EEEEcCCCCCCCHHHHHHHHH-HHHhh
Confidence            477899999999999999999 99643

>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*

Probab=81.75  E-value=1.3  Score=29.55  Aligned_cols=32  Identities=16%  Similarity=0.199  Sum_probs=27.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|-|+-+-+|-+-|..+|+ +||.|..=++.
T Consensus        17 tlfVgnLp~~~te~~L~~~F~-~~G~I~~v~i~   48 (213)
T 4f02_A           17 SLYVGDLHPDVTEAMLYEKFS-PAGPILSIRVC   48 (213)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hhCCEEEEEEe
Confidence            467899999999999999999 99999754443

>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A

Probab=81.43  E-value=1.2  Score=30.17  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=28.6

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|.|.|+-+.+|.+-|..+|+ +||.|..  +-|+++.
T Consensus       111 ~l~V~nLp~~~t~~~L~~~F~-~~G~v~~--v~i~~~~  145 (193)
T 2voo_A          111 SVYIKGFPTDATLDDIKEWLE-DKGQVLN--IQMRRTL  145 (193)
T ss_dssp             EEEEECCCTTCCHHHHHHHHT-TSCCEEE--EEEEECT
T ss_pred             EEEecCCCCcCCHHHHHHHHh-cCCCEEE--EEEEECC
Confidence            477899999999999999999 9999964  4455443

>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E

Probab=81.13  E-value=1.3  Score=30.34  Aligned_cols=30  Identities=7%  Similarity=0.061  Sum_probs=25.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|.|.|+=+.+|-+-|+.+|+ +|| |..-.+
T Consensus        24 ~l~V~nLp~~~te~~l~~~F~-~~G-i~~~~~   53 (284)
T 3smz_A           24 KILIRGLPGDVTNQEVHDLLS-DYE-LKYCFV   53 (284)
T ss_dssp             EEEEECCCTTCCHHHHHHHTT-TSC-EEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HcC-CEEEEE
Confidence            567899999999999999999 999 654433

>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=81.13  E-value=0.78  Score=26.62  Aligned_cols=31  Identities=16%  Similarity=0.149  Sum_probs=25.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+.+|-+-|..+|+ +||.|.+...
T Consensus        10 ~l~V~nLp~~~t~~~l~~~F~-~~G~vv~~~~   40 (93)
T 2cqh_A           10 KLYIGNLSPAVTADDLRQLFG-DRKLPLAGQV   40 (93)
T ss_dssp             CEEEECCCTTCCHHHHHHHHH-HTTCCCSSCE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HcCCceEEEE
Confidence            567899999999999999999 9999543333

>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A

Probab=81.03  E-value=1.9  Score=28.00  Aligned_cols=38  Identities=16%  Similarity=0.197  Sum_probs=30.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL   69 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~   69 (80)
                      -.|-|.|+-|-+|-+-|...|+ +| .|....+-+++|+.
T Consensus        43 ~~lfVgnLp~~~te~dL~~~F~-~~-~i~~~~v~i~~d~~   80 (126)
T 2hgm_A           43 GFVRLRGLPFGCTKEEIVQFFS-GL-EIVPNGITLPVDPE   80 (126)
T ss_dssp             CEEEEECCCTTCCHHHHHHHTT-TS-CEEEEEEECCCCSS
T ss_pred             CEEEEeCCCCCCCHHHHHHHHh-cC-CceeeEEEEEECCC
Confidence            4477899999999999999999 99 45544677777654

>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1

Probab=80.86  E-value=1.1  Score=28.93  Aligned_cols=35  Identities=9%  Similarity=0.199  Sum_probs=27.4

Q ss_pred             EEEEecccc-eeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLY-PITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~Y-PVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|-|.|+-+ -+|-+-|..+|+ +||.|.+  +.+..++
T Consensus         5 ~l~v~nlp~~~~~~~~l~~~F~-~~G~i~~--v~i~~~~   40 (198)
T 1qm9_A            5 VLLVSNLNPERVTPQSLFILFG-VYGDVQR--VKILFNK   40 (198)
T ss_dssp             EEEEECCCSSSCCHHHHHHHHH-TTCCCSE--EECSTTC
T ss_pred             EEEEeCCCcccCCHHHHHHHHH-hcCCEEE--EEEEeCC
Confidence            356789988 899999999999 9999864  3344444

>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1

Probab=80.78  E-value=1  Score=29.82  Aligned_cols=48  Identities=13%  Similarity=0.063  Sum_probs=34.1

Q ss_pred             CCCCCCCCcEEEEEEecccce-eehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          20 TDTQGGPNTVLRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        20 ~~~~~~pn~VLrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      |...-.++.||.  |.|+-+- +|-+-|..+|+ +||.|.  .+-+..+..-||
T Consensus        11 ~~~~~~~G~il~--v~~l~~~~~sredLke~F~-~~G~V~--~Vd~~~g~~tgf   59 (121)
T 1owx_A           11 GSLEEKIGCLLK--FSGDLDDQTCREDLHILFS-NHGEIK--WIDFVRGAKEGI   59 (121)
T ss_dssp             CCCSCCCCCEEE--EEESCCSSCCHHHHHHHTC-SSCCEE--EEECCTTCSEEE
T ss_pred             CcccccCCeEEE--EecCCCCcCCHHHHHHHHH-hcCCEE--EEEEecCCCEEE
Confidence            344446666665  5588777 99999999999 999984  444555555566

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d2adba1	108	Polypyrimidine tract-binding protein {Human (Homo	98.62
d2adca2	88	Polypyrimidine tract-binding protein {Human (Homo	96.31
d2b0ga1	83	Splicesomal U1A protein {Drosophila melanogaster [	95.71
d2cq1a1	88	Polypyrimidine tract-binding protein 2, PTBP2 {Hum	95.56
d1owxa_	113	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	94.95
d2cq2a1	101	Alkylation repair AlkB homolog 8, ALKBH8 {Human (H	94.81
d1wexa_	104	Heterogeneous nuclear ribonucleoprotein L-like {Mo	94.57
d2cq3a1	93	RNA-binding protein 9 {Human (Homo sapiens) [TaxId	94.53
d1cvja2	89	Poly(A)-binding protein {Human (Homo sapiens) [Tax	94.4
d1whya_	97	Putative RNA-binding protein 15B, Rbm15b {Mouse (M	94.22
d2adca1	109	Polypyrimidine tract-binding protein {Human (Homo	94.0
d2bz2a1	79	Negative elongation factor E, NELF-E {Human (Homo	93.85
d1no8a_	78	Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 1	93.22
d1rk8a_	88	RNA-binding protein 8 {Fruit fly (Drosophila melan	93.1
d2f9da1	114	Pre-mRNA branch site protein p14 {Human (Homo sapi	92.87
d2cpja1	86	Non-POU domain-containing octamer-binding protein,	92.77
d1b7fa1	82	Sex-lethal protein {Drosophila melanogaster [TaxId	92.65
d2ghpa2	75	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	92.57
d1fxla2	85	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	92.52
d2cqga1	90	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	92.42
d1b7fa2	85	Sex-lethal protein {Drosophila melanogaster [TaxId	92.26
d1l3ka1	84	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	92.22
d2cpha1	94	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	92.03
d1uawa_	77	Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}	91.95
d2cqba1	89	Peptidyl-prolyl cis-trans isomerase E, N-terminal	91.95
d1x0fa1	75	Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo s	91.82
d1hd0a_	75	Heterogeneous nuclear ribonucleoprotein d0 {Human	91.42
d1whwa_	99	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	91.41
d1whxa_	111	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	91.25
d2cqca1	83	Arginine/serine-rich splicing factor 10 {Human (Ho	91.16
d1x4ea1	72	RNA-binding motif, single-stranded-interacting pro	91.1
d1x4fa1	99	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	90.95
d1x5oa1	101	RNA-binding motif, single-stranded-interacting pro	90.93
d1o0pa_	104	Splicing factor U2AF 65 KDa subunit {Human (Homo s	90.87
d1h2vz_	93	CBP20, 20KDa nuclear cap-binding protein {Human (H	90.86
d1x4ga1	96	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	90.8
d2u2fa_	85	Splicing factor U2AF 65 KDa subunit {Human (Homo s	90.72
d2cpza1	102	CUG triplet repeat RNA-binding protein 1 {Human (H	90.63
d1wg4a_	98	Splicing factor, arginine/serine-rich 9 (SFRS9) {M	90.36
d2cqia1	90	Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960	90.27
d2cq0a1	90	Eukaryotic translation initiation factor 3 subunit	89.94
d1u6fa1	139	RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId	89.9
d2ghpa3	86	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	89.81
d2cqda1	103	RNA-binding region containing protein 1 {Human (Ho	89.58
d1x5ua1	93	Splicing factor 3B subunit 4 {Human (Homo sapiens)	89.51
d1x4ba1	103	Heterogeneous nuclear ribonucleoproteins A2/B1 {Hu	89.24
d1fxla1	82	Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9	88.87
d2cpfa1	85	Probable RNA-binding protein 19, Rbm19 {Mouse (Mus	88.73
d1l3ka2	79	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	88.65
d3begb1	87	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	88.36
d1x5sa1	90	Cold-inducible RNA-binding protein {Human (Homo sa	88.18
d2ghpa1	81	U4/U6 snRNA-associated-splicing factor PRP24 {Bake	87.65
d1wf0a_	88	TAR DNA-binding protein 43, TDP-43 {Human (Homo sa	87.56
d1x5ta1	83	Splicing factor 3B subunit 4 {Human (Homo sapiens)	87.53
d1x4aa1	95	Splicing factor, arginine/serine-rich 1, SFRS1 {Hu	87.52
d2cqpa1	86	RNA-binding protein 12 {Mouse (Mus musculus) [TaxI	87.32
d2cpxa1	102	RNA-binding protein 41, RBM41 {Human (Homo sapiens	87.25
d1x4da1	89	Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}	87.04
d1p1ta_	104	Cleavage stimulation factor, 64 kda subunit {Human	86.76
d1wf2a_	98	Heterogeneous nuclear ribonucleoproteins C1/C2 {Hu	86.72
d2cqha1	80	IGF-II mRNA-binding protein 2 isoform A {Human (Ho	86.56
d2dita1	99	HIV Tat-specific factor 1 {Human (Homo sapiens) [T	86.36
d1cvja1	80	Poly(A)-binding protein {Human (Homo sapiens) [Tax	86.28
d2cq4a1	101	RNA binding protein 23 {Human (Homo sapiens) [TaxI	85.53
d2msta_	75	Neural RNA-binding protein Musashi-1 {Mouse (Mus m	85.45
d1wi8a_	104	Eukaryotic translation initiation factor 4B {Human	85.17
d1x4ha1	98	RNA-binding protein 28 {Mouse (Mus musculus) [TaxI	83.6
d2cpia1	89	E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musc	83.57
d1zh5a2	85	Lupus LA protein {Human (Homo sapiens) [TaxId: 960	82.73
U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}" target="_blank" href="http://scop.mrc-lmb.cam.ac.uk/scop/search.cgi?sid=d1jmta_">d1jmta_	104	U2	82.46
d1fjca_	96	Nucleolin {Golden hamster (Mesocricetus auratus) [	81.99
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	81.74
d1u1qa_	183	Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human	81.72
d2cpda1	86	APOBEC1 stimulating protein {Human (Homo sapiens)	80.27

>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=9.2e-09  Score=63.73  Aligned_cols=41  Identities=41%  Similarity=0.698  Sum_probs=36.7

Q ss_pred             CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      +.+|+++|||.|.|+-|.||-|-|+++|+ +||.|.+-++..
T Consensus         1 ~~~~s~~~~v~V~NL~~~vte~~L~~~F~-~~G~i~~~~i~~   41 (108)
T d2adba1           1 MAGQSPVLRIIVENLFYPVTLDVLHQIFS-KFGTVLKIITFT   41 (108)
T ss_dssp             SCCCCCEEEEESCSCCSTTHHHHHHHHHT-TTSCEEEEEEEE
T ss_pred             CCCCCCeEEEEEeCcCCCCCHHHHHHHHc-cCCcEEEEEEEe
Confidence            35789999999999999999999999999 999998766543

>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0017  Score=37.70  Aligned_cols=38  Identities=11%  Similarity=0.064  Sum_probs=31.2

Q ss_pred             CCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172          25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      +||++|  -|.|+-+.+|-|-|+++|+ +||.|.+-.+-.+
T Consensus         8 pPs~tL--~V~NLp~~~te~~l~~~F~-~~G~v~~~~~~~~   45 (88)
T d2adca2           8 PPSATL--HLSNIPPSVSEEDLKVLFS-SNGGVVKGFKFFQ   45 (88)
T ss_dssp             CSCSEE--EEECCCTTCCHHHHHHHHH-TTSCCEEEEEECS
T ss_pred             CCCCEE--EEECCCCCCCHHHHHHHhh-ccCCEEEEEEeee
Confidence            678875  4779999999999999999 9999986554433

>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicesomal U1A protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.71  E-value=0.0064  Score=34.90  Aligned_cols=38  Identities=21%  Similarity=0.178  Sum_probs=31.8

Q ss_pred             CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      ...+||++|-  |.|+-+.+|-+-|+.+|+ +||.|.+-++
T Consensus         3 ~~~pP~~tl~--V~nLp~~~t~~~l~~~f~-~~G~i~~v~~   40 (83)
T d2b0ga1           3 TEQPPNQILF--LTNLPEETNEMMLSMLFN-QFPGFKEVRL   40 (83)
T ss_dssp             CCCSCCSEEE--EESCCTTCCHHHHHHHHT-TSTTEEEEEE
T ss_pred             CCCCCCCEEE--EECCCCCCCHHHHHhhhc-cCccEEEeee
Confidence            3457888755  999999999999999999 9999976544

>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein 2, PTBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0058  Score=35.37  Aligned_cols=45  Identities=20%  Similarity=0.369  Sum_probs=34.5

Q ss_pred             CCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          23 QGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        23 ~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .+.|+++|.|  .|+-+.+|-+-|..+|+ +||.|..  +-+..++.-||
T Consensus         4 ~~~Ps~~l~V--~nLp~~~t~~~L~~~f~-~~G~i~~--v~~~~~~~~af   48 (88)
T d2cq1a1           4 DGAPSRVLHI--RKLPGEVTETEVIALGL-PFGKVTN--ILMLKGKNQAF   48 (88)
T ss_dssp             CSSCCSEEEE--ESCCTTCCHHHHHHTTT-TTSCEEE--EEEETTTTEEE
T ss_pred             CCCCCCEEEE--eCCCCCCCHHHHHHHHh-ccccccc--ccccccceEEE
Confidence            4578888775  99999999999999999 9999975  33444444444

>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.95  E-value=0.011  Score=36.03  Aligned_cols=46  Identities=11%  Similarity=-0.036  Sum_probs=36.7

Q ss_pred             CCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCcc
Q psy9172          25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGFR   73 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~~   73 (80)
                      .|.-+|++-|-|+-+.+|-|-|..+|+ +||.|.  ++-++.++--||-
T Consensus         7 ~~~g~~~~fvgnL~~~~tee~Lk~~F~-~fG~V~--~v~i~~~kg~gfV   52 (113)
T d1owxa_           7 EKIGCLLKFSGDLDDQTCREDLHILFS-NHGEIK--WIDFVRGAKEGII   52 (113)
T ss_dssp             CCCCCEEEEEESCCSSCCHHHHHHHTC-SSCCEE--EEECCTTCSEEEE
T ss_pred             CCCCCeEEEECCCCCCCCHHHHHHHHH-hcCChh--eEEEecCCceEEE
Confidence            344478888999999999999999999 999995  5556666666653

>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8, ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Alkylation repair AlkB homolog 8, ALKBH8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0084  Score=36.19  Aligned_cols=48  Identities=21%  Similarity=0.141  Sum_probs=37.0

Q ss_pred             CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ....|++.|.|-+-|+-+.+|-+-|..+|+ +||.|..  +-+..++.-||
T Consensus        13 ~~~~pt~~l~V~ng~L~~~vte~~L~~~F~-~~G~i~~--i~~~~~k~~aF   60 (101)
T d2cq2a1          13 TVSYATQSLVVANGGLGNGVSRNQLLPVLE-KCGLVDA--LLMPPNKPYSF   60 (101)
T ss_dssp             CCSSCCSEEEEETCTGGGTCCHHHHHHHHH-HHSCEEE--EECCTTCSCEE
T ss_pred             cCCCCCceEEEECCCCCCCCCHHHHHHHHH-hhCcccE--EeeccCccEEE
Confidence            345677777776677999999999999999 9999963  45555665555

>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein L-like {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein L-like
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.023  Score=33.79  Aligned_cols=46  Identities=11%  Similarity=0.065  Sum_probs=34.6

Q ss_pred             CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ....|+++|.  |.|+-+.||-|-|.++|+ +||.|.+-.+  ..++--+|
T Consensus        10 ~~~~ps~~l~--v~nlp~~~te~~l~~~F~-~fG~I~~~~~--~~~k~~Af   55 (104)
T d1wexa_          10 HKVSVSPVVH--VRGLCESVVEADLVEALE-KFGTICYVMM--MPFKRQAL   55 (104)
T ss_dssp             CCCCCCSEEE--EESCCSSCCHHHHHHHHT-TTSCEEEEEE--ETTTTEEE
T ss_pred             CcCCCCCEEE--EeCCCCCCCHHHHHHhhh-hcccceEEEE--EecceeEE
Confidence            4457888877  679988999999999999 9999975443  34444444

>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.018  Score=33.59  Aligned_cols=41  Identities=17%  Similarity=0.323  Sum_probs=31.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|-|.|+-+-+|-+-|+++|+ +||.|.+=.+......+-||
T Consensus        13 ~l~v~nLp~~~t~~~L~~~F~-~~G~v~~v~~~~~~~~~kg~   53 (93)
T d2cq3a1          13 RLHVSNIPFRFRDPDLRQMFG-QFGKILDVEIIFNERGSKGF   53 (93)
T ss_dssp             EEEEESCCTTCCHHHHHHHGG-GTSCEEEEEEECCTTTTCCE
T ss_pred             EEEEECCCCCCCHHHHHHHHh-hcceeeeccccccccCCcce
Confidence            478999999999999999999 99999765554444333343

>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.022  Score=32.92  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=32.8

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      |-|.|+-+-+|-+-|..+|+ +||.|.+-.+......+-||
T Consensus        11 l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~~~~~~kg~   50 (89)
T d1cvja2          11 IFIKNLDKSIDNKALYDTFS-AFGNILSCKVVCDENGSKGY   50 (89)
T ss_dssp             EEEESCCSSCCHHHHHHHHH-TTSCEEEEEECCBTTBCCSC
T ss_pred             EEEeCCCCCCCHHHHHHHHH-hcCCceEEEEEeecCCCcce
Confidence            67999999999999999999 99999866665555555555

>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Putative RNA-binding protein 15B, Rbm15b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.22  E-value=0.021  Score=33.57  Aligned_cols=44  Identities=14%  Similarity=0.201  Sum_probs=32.8

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ..|++.  |.|.|+-+.+|-|-|+++|+ +||.|.+  +-+..++.-||
T Consensus        14 ~~Ps~t--l~V~nLp~~~t~~~l~~~f~-~~G~i~~--~~~~~~~~~af   57 (97)
T d1whya_          14 ANPTTR--LWVGGLGPNTSLAALAREFD-RFGSIRT--IDHVKGDSFAY   57 (97)
T ss_dssp             CCCCSC--EEEECCCSSCCHHHHHHHHH-TTSCEEE--EEECSSSCCEE
T ss_pred             CCCCCE--EEEcCCCCCCCHHHHHHHHH-hhcccce--EeeeccccEEE
Confidence            355554  56899999999999999999 9999964  33444554444

>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Polypyrimidine tract-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.013  Score=34.50  Aligned_cols=34  Identities=18%  Similarity=0.292  Sum_probs=26.5

Q ss_pred             CcEEEEEEecc-cceeehhhhhhhhcccccceeeecee
Q psy9172          27 NTVLRVIIEHM-LYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        27 n~VLrviIeN~-~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      |+||.  |.|+ -+.||-|-|+.+|+ +||.|.+-++.
T Consensus         2 ~~~l~--V~nL~p~~~te~~L~~~F~-~fG~I~~v~i~   36 (109)
T d2adca1           2 NSVLL--VSNLNPERVTPQSLFILFG-VYGDVQRVKIL   36 (109)
T ss_dssp             CSEEE--EESCCTTTCCHHHHHHHHH-HHTCEEEEEEC
T ss_pred             CCEEE--EeCCCcccCCHHHHHHHHh-hccccceEEEE
Confidence            45555  5777 35699999999999 99999866554

>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Negative elongation factor E, NELF-E
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.026  Score=32.02  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=25.2

Q ss_pred             EEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          33 IIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        33 iIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      -|.|  +|+|-|-|.++|+ +||.|.+  +.+..++.-||
T Consensus         9 ~V~~--~~~te~~L~~~F~-~~G~I~~--v~~~~~~~~af   43 (79)
T d2bz2a1           9 YVYG--EDMTPTLLRGAFS-PFGNIID--LSMDPPRNCAF   43 (79)
T ss_dssp             EEEC--SSCCHHHHHHHHS-TTCCCSC--EEEETTTTEEE
T ss_pred             EEEC--CCCCHHHHHHHHh-ccCccce--eeeccCCCEEE
Confidence            3457  4899999999999 9999975  33444444444

>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear factor Aly
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.22  E-value=0.029  Score=31.72  Aligned_cols=35  Identities=9%  Similarity=0.260  Sum_probs=29.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      |+.|.|+-+-+|-+-|.+.|+ +||.|.+=.  +++++
T Consensus         2 rl~V~nLp~~~~~~~l~~~F~-~~G~v~~~~--i~~~~   36 (78)
T d1no8a_           2 KLLVSNLDFGVSDADIQELFA-EFGTLKKAA--VHYDR   36 (78)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-HHSCEEEEE--ESCSS
T ss_pred             EEEEECCCCCCCHHHHHHHHH-HhCCCeEEE--EEEee
Confidence            688999999999999999999 999997544  44444

>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 8
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.10  E-value=0.041  Score=31.69  Aligned_cols=33  Identities=9%  Similarity=0.084  Sum_probs=28.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|-|.|+-+-+|-+-|+.+|+ +||.|.+=++..
T Consensus         9 ~l~V~nL~~~~t~~~l~~~F~-~~G~i~~v~i~~   41 (88)
T d1rk8a_           9 ILFVTSIHEEAQEDEIQEKFC-DYGEIKNIHLNL   41 (88)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HcCCcccccccc
Confidence            467899999999999999999 999997654443

>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Pre-mRNA branch site protein p14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.044  Score=32.49  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             CCCcEEEEEEecccceeehhhhhhhhcccccceeee
Q psy9172          25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      ..|..  |.|.|+-|-+|-+-|+.+|+ +||.|..=
T Consensus         5 ~~~r~--l~V~nLp~~~te~~l~~~F~-~~G~v~~i   37 (114)
T d2f9da1           5 EVNRI--LYIRNLPYKITAEEMYDIFG-KYGPIRQI   37 (114)
T ss_dssp             TCCSE--EEEESCCTTCCHHHHHHHHH-TTSCEEEE
T ss_pred             CCCCE--EEEECCCCCCCHHHHHHHHh-hcCCeEee
Confidence            34443  57899999999999999999 99999753

>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing octamer-binding protein, NonO {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Non-POU domain-containing octamer-binding protein, NonO
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.77  E-value=0.032  Score=32.22  Aligned_cols=39  Identities=23%  Similarity=0.364  Sum_probs=30.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|-|.|+-+-+|-+-|.++|+ +||.|.+  +-|..++--||
T Consensus        10 ~l~V~nLp~~~~~~~l~~~F~-~~G~i~~--i~~~~~k~~af   48 (86)
T d2cpja1          10 RLFVGNLPPDITEEEMRKLFE-KYGKAGE--VFIHKDKGFGF   48 (86)
T ss_dssp             EEEEESCCTTCCHHHHHHHTS-TTCCCSE--EEEETTTTEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-HhCCceE--eeeecccceEE
Confidence            477999999999999999999 9999964  44455554444

>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.65  E-value=0.051  Score=30.43  Aligned_cols=32  Identities=16%  Similarity=0.182  Sum_probs=27.4

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      |-|.|+=+-+|-|-|..+|+ +||.|.+-++..
T Consensus         5 l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~i~~   36 (82)
T d1b7fa1           5 LIVNYLPQDMTDRELYALFR-AIGPINTCRIMR   36 (82)
T ss_dssp             EEEECCCTTCCHHHHHHHHH-TTSCEEEEECCE
T ss_pred             EEEeCCCCCCCHHHHHHHHH-HhCCcceeeeee
Confidence            67899988999999999999 999997655443

>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.57  E-value=0.049  Score=30.74  Aligned_cols=38  Identities=11%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      |.|.|+=|-+|-+-|.+.|+ +||.|..  +-++.++.-+.
T Consensus         3 v~V~nlp~~~t~~~l~~~F~-~~G~I~~--v~~~~~~~~~~   40 (75)
T d2ghpa2           3 VLVKNLPKSYNQNKVYKYFK-HCGPIIH--VDVADSLKKNF   40 (75)
T ss_dssp             EEEEEECTTCCHHHHHHHHG-GGSCEEE--EEEEECTTSSS
T ss_pred             EEEECCCCCCCHHHHHHHHh-cCCceEE--EEEEeeccccc
Confidence            67899999999999999999 9999964  45555554443

>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.055  Score=30.92  Aligned_cols=33  Identities=12%  Similarity=0.266  Sum_probs=28.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+=++..
T Consensus         8 ~lfV~nLp~~~te~~L~~~F~-~~G~v~~v~i~~   40 (85)
T d1fxla2           8 NLYVSGLPKTMTQKELEQLFS-QYGRIITSRILV   40 (85)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HhCCcccccccc
Confidence            377999999999999999999 999998655544

>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.42  E-value=0.052  Score=31.76  Aligned_cols=33  Identities=15%  Similarity=0.260  Sum_probs=28.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .+.|.|+-|-+|=|-|..+|+ +||.|.+=.+.+
T Consensus        10 ~lfV~nLp~~~te~~l~~~F~-~~G~i~~v~i~~   42 (90)
T d2cqga1          10 DLIVLGLPWKTTEQDLKEYFS-TFGEVLMVQVKK   42 (90)
T ss_dssp             CEEEESCCSSCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             eEEEECCCCCCCHHHHHHHHH-hhcccceeeecc
Confidence            467999999999999999999 999997544443

>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Sex-lethal protein
species: Drosophila melanogaster [TaxId: 7227]

Probab=92.26  E-value=0.061  Score=30.55  Aligned_cols=32  Identities=19%  Similarity=0.262  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|+.+|+ +||.|.+=++.
T Consensus         8 ~lfV~nlp~~~te~~l~~~F~-~~G~i~~~~~~   39 (85)
T d1b7fa2           8 NLYVTNLPRTITDDQLDTIFG-KYGSIVQKNIL   39 (85)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-SSSCEEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hhCCEeeeeee
Confidence            388999999999999999999 99999754443

>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.046  Score=31.40  Aligned_cols=36  Identities=11%  Similarity=0.158  Sum_probs=30.1

Q ss_pred             cEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          28 TVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        28 ~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      ..=+|-|.|+-|.+|-+-|...|+ +||.|.+=.+.+
T Consensus         5 ~~~~lfV~nlp~~~te~~l~~~F~-~~G~i~~v~i~~   40 (84)
T d1l3ka1           5 QLRKLFIGGLSFETTDESLRSHFE-QWGTLTDCVVMR   40 (84)
T ss_dssp             GGGEEEEESCCTTCCHHHHHHHHG-GGSCEEEEEEEE
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHH-hhccccceeecc
Confidence            345789999999999999999999 999997544443

>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.03  E-value=0.047  Score=31.88  Aligned_cols=33  Identities=9%  Similarity=0.296  Sum_probs=28.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      +|.|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus        10 ~l~V~nLp~~~~e~~l~~~F~-~~G~i~~v~i~~   42 (94)
T d2cpha1          10 KILVRNIPFQANQREIRELFS-TFGELKTVRLPK   42 (94)
T ss_dssp             CEEEESCCTTCCHHHHHHHHH-TTSCEEEEECCC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HhCCceEEEEEe
Confidence            478999999999999999999 999997544433

>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.95  E-value=0.046  Score=31.10  Aligned_cols=36  Identities=22%  Similarity=0.364  Sum_probs=28.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL   69 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~   69 (80)
                      +|-|.|+-+.+|-|-|...|+ +||.|.+=  -+++|+.
T Consensus         2 klfV~nLp~~~te~~l~~~F~-~~G~i~~v--~i~~d~~   37 (77)
T d1uawa_           2 KMFIGGLSWQTTQEGLREYFG-QFGEVKEC--LVMRDPL   37 (77)
T ss_dssp             CEEEESCCSSCCSHHHHHHHT-TTSCCCCE--EEECCCC
T ss_pred             EEEEeCCCCcCCHHHHHHHHH-HhCCccee--eeecccC
Confidence            467899999999999999999 99998643  4455543

>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Peptidyl-prolyl cis-trans isomerase E, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.95  E-value=0.049  Score=31.31  Aligned_cols=30  Identities=13%  Similarity=0.099  Sum_probs=25.7

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeece
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      |-|.|+-+-+|-+-|+++|+ +||.|.+=.+
T Consensus         8 lfV~nLp~~~te~~l~~~F~-~~G~i~~v~i   37 (89)
T d2cqba1           8 LYVGGLAEEVDDKVLHAAFI-PFGDITDIQI   37 (89)
T ss_dssp             EEEESCCSSCCHHHHHHHHT-TTSCCCCEEC
T ss_pred             EEEeCCCCcCCHHHHHHHHh-hCCeEEeccc
Confidence            45899999999999999999 9999865443

>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein D0 (AUF1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.82  E-value=0.061  Score=30.56  Aligned_cols=41  Identities=17%  Similarity=0.321  Sum_probs=31.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecc--ccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPR--DELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~--~~~~~~   72 (80)
                      +|-|.|+-+.+|=|-|...|+ +||.|.+=.+.+..  .++.||
T Consensus         1 klfVgnLp~~~te~~l~~~F~-~~G~I~~v~i~~d~~t~~~rG~   43 (75)
T d1x0fa1           1 KIFVGGLSPDTPEEKIREYFG-GFGEVESIELPMDNKTNKRRGF   43 (75)
T ss_dssp             EEEEESCCSSCCHHHHHHHHH-HHSCEEEEECCCCTTTCCTTCC
T ss_pred             CEEEcCCCCCCCHHHHHHHHH-HhCCcccccccccccccccccE
Confidence            467899999999999999999 99999755544432  344554

>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoprotein d0
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.42  E-value=0.066  Score=30.00  Aligned_cols=35  Identities=20%  Similarity=0.336  Sum_probs=28.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      ||-|-|+-+-+|=|-|...|+ +||.|..=  -+++++
T Consensus         1 klfV~nl~~~~te~~l~~~F~-~~G~i~~~--~i~~d~   35 (75)
T d1hd0a_           1 KMFIGGLSWDTTKKDLKDYFS-KFGEVVDC--TLKLDP   35 (75)
T ss_dssp             CEEEECCCTTCCHHHHHHHHH-TTSCEEEE--ECCCBT
T ss_pred             CEEEeCCCCcCCHHHHHHHHH-hhcccccc--ccccCC
Confidence            467899999999999999999 99999643  344443

>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.41  E-value=0.12  Score=29.97  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL   69 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~   69 (80)
                      =+|-|.|+-|-+|-|-|..+|+ +||.|.+  +-+++|+.
T Consensus         9 ~~lfV~nL~~~~t~~~l~~~F~-~~g~v~~--v~i~~d~~   45 (99)
T d1whwa_           9 GRLFVRNLSYTSSEEDLEKLFS-AYGPLSE--LHYPIDSL   45 (99)
T ss_dssp             EEEEEECCCTTCCHHHHHHHHH-TTSCEEE--EECCCCTT
T ss_pred             CEEEEECCCCcCCHHHHHHHHH-hcCCcee--eeeccccc
Confidence            3799999999999999999999 9999975  44555543

>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.069  Score=31.17  Aligned_cols=28  Identities=7%  Similarity=0.043  Sum_probs=25.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      -|.|.|+=+-+|-+-|..+|+ +||.|.+
T Consensus        12 ~l~V~nLp~~~t~~~L~~~F~-~fG~I~~   39 (111)
T d1whxa_          12 VILAKNLPAGTLAAEIQETFS-RFGSLGR   39 (111)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEE
T ss_pred             EEEEECCCCCCCHHHHHhhhh-ccCCccE
Confidence            357899989999999999999 9999965

>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor 10 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Arginine/serine-rich splicing factor 10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.16  E-value=0.07  Score=30.07  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=28.8

Q ss_pred             CCCcEEEEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          25 GPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|++.  |-|.|+-+-+|-+-|..+|+ +||.|.+=++.
T Consensus         7 ~~~~~--l~V~nL~~~~te~~l~~~F~-~~G~i~~v~i~   42 (83)
T d2cqca1           7 DPNCC--LGVFGLSLYTTERDLREVFS-KYGPIADVSIV   42 (83)
T ss_dssp             CGGGC--EEEESCCSSCCHHHHHHHHH-TTSCEEEEEEE
T ss_pred             CCCCE--EEEeCCCCCCCHHHHHHHHH-HhCCCcccccc
Confidence            34444  57999999999999999999 99999754443

>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif, single-stranded-interacting protein 2, RBMS2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 2, RBMS2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.10  E-value=0.091  Score=28.71  Aligned_cols=32  Identities=19%  Similarity=0.179  Sum_probs=27.2

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      |-|.|+-+-+|-+-|..+|+ +||.|.+-++..
T Consensus         1 lyV~nLp~~~te~~l~~~F~-~~G~v~~~~~~~   32 (72)
T d1x4ea1           1 LYIRGLQPGTTDQDLVKLCQ-PYGKIVSTKAIL   32 (72)
T ss_dssp             EEEESCCTTCCHHHHHTTST-TTSCEEEEEEEC
T ss_pred             CEEeCCCCcCCHHHHHHHHh-hhcccccccccc
Confidence            46889989999999999999 999998755544

>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.95  E-value=0.1  Score=30.73  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=28.5

Q ss_pred             CCCCcEEEEEEecccce-eehhhhhhhhcccccceeeece
Q psy9172          24 GGPNTVLRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      ..++++|  -|.|+-+. +|-+-|..+|+ +||.|.+-.+
T Consensus        15 ~~~~~~l--~v~nLp~~~~te~~l~~~F~-~fG~V~~v~~   51 (99)
T d1x4fa1          15 QELGRVI--HLSNLPHSGYSDSAVLKLAE-PYGKIKNYIL   51 (99)
T ss_dssp             SCCCCEE--EEESCCCSSCCSHHHHTTTT-TTSCCSEEEE
T ss_pred             CCCCCEE--EEeCCcCCccCHHHHHhhhc-cccceeEEEE
Confidence            3556664  48999776 89999999999 9999976544

>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif, single-stranded-interacting protein 1, RBMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding motif, single-stranded-interacting protein 1, RBMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.93  E-value=0.094  Score=30.78  Aligned_cols=29  Identities=21%  Similarity=0.309  Sum_probs=26.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      +|-|.|+=+-+|-+-|+++|+ +||.|.+-
T Consensus        20 ~lfV~nLp~~~te~~L~~~F~-~~G~i~~~   48 (101)
T d1x5oa1          20 NLYISNLPLSMDEQELENMLK-PFGQVIST   48 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHTTT-TTSCEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHh-hcccccce
Confidence            578999999999999999999 99999643

>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.87  E-value=0.092  Score=31.23  Aligned_cols=39  Identities=28%  Similarity=0.432  Sum_probs=27.6

Q ss_pred             CCCCcEEEEEEecccceeeh----------hhhhhhhcccccceeeeceeec
Q psy9172          24 GGPNTVLRVIIEHMLYPITL----------DVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTl----------dVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      |.|++||.  +.||+.|-.+          |=|-..|+ +||.|.+=++.++
T Consensus         1 g~Ps~vl~--l~N~~~~~~l~~~~~~~~i~edi~~e~~-k~G~v~~v~I~~~   49 (104)
T d1o0pa_           1 GHPTEVLC--LMNMVLPEELLDDEEYEEIVEDVRDECS-KYGLVKSIEIPRP   49 (104)
T ss_dssp             CCCCSEEE--EESSCCTTTTTSHHHHHHHHHHHHHHHT-TTSCEEEEECCCC
T ss_pred             CCCCcEEE--EeCCCCHHHcCCchhHHHHHHHHHHHhc-ccCceEEEEEeec
Confidence            47888865  6699776543          23567899 9999987655443

>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CBP20, 20KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.11  Score=30.21  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELA   70 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~   70 (80)
                      .|-|.|+-+-+|-+-|.++|+ +||.|.+  +.++.++..
T Consensus         9 tlfV~nlp~~~te~~l~~~F~-~~G~i~~--v~i~~~~~~   45 (93)
T d1h2vz_           9 TLYVGNLSFYTTEEQIYELFS-KSGDIKK--IIMGLDKMK   45 (93)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEE--EEEEECTTT
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HHCCcce--ecccccccc
Confidence            578999999999999999999 9999964  445554443

>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.80  E-value=0.066  Score=31.49  Aligned_cols=39  Identities=15%  Similarity=0.131  Sum_probs=30.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      +|-|.|+-+-+|-+-|+.+|+ +||.|.+-++  ..++--||
T Consensus        20 ~l~v~nL~~~~te~~L~~~F~-~fG~i~~v~i--~~~kg~af   58 (96)
T d1x4ga1          20 TVYCGGIASGLTDQLMRQTFS-PFGQIMEIRV--FPEKGYSF   58 (96)
T ss_dssp             EEEEECCSSCCCHHHHHHHHH-HHSCEEEEEE--ETTTTEEE
T ss_pred             EEEEcCCCCCCCHHHHHHHHH-HhCCceEEEE--EecceEEE
Confidence            578999988899999999999 9999976544  44554444

>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor U2AF 65 KDa subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.72  E-value=0.097  Score=29.90  Aligned_cols=33  Identities=15%  Similarity=0.167  Sum_probs=27.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      ||-|.|+-+-+|=+-|..+|+ +||.|.+=++..
T Consensus         3 rlfV~nlp~~~te~~l~~~F~-~~G~v~~v~i~~   35 (85)
T d2u2fa_           3 KLFIGGLPNYLNDDQVKELLT-SFGPLKAFNLVK   35 (85)
T ss_dssp             CEEEETCCSSCCSHHHHHHHT-SSSCEEEEEEEC
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCccceEEeec
Confidence            577999989999999999999 999997544443

>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: CUG triplet repeat RNA-binding protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.63  E-value=0.14  Score=30.13  Aligned_cols=38  Identities=21%  Similarity=0.256  Sum_probs=30.7

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      ++|++  .|.|.|+-+-+|-+-|.++|+ +||.+.+-++..
T Consensus        15 ~p~~~--~l~V~nLp~~~te~~l~~~F~-~~G~i~~~~~~~   52 (102)
T d2cpza1          15 GPEGA--NLFIYHLPQEFGDQDLLQMFM-PFGNVVSAKVFI   52 (102)
T ss_dssp             CSTTC--CEEEESCCSSCCHHHHHHHHG-GGSCCSEEEEEE
T ss_pred             CCCCC--EEEEeCCCCCCCHHHHHHHHH-hhccccccceee
Confidence            34444  488999999999999999999 999987655443

>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9 (SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 9 (SFRS9)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.36  E-value=0.16  Score=29.85  Aligned_cols=32  Identities=13%  Similarity=0.138  Sum_probs=28.3

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      -+|.|.|+-|-+|-+-|..+|+ .||.|.+-++
T Consensus        16 ~~i~V~Nlp~~~~~~~L~~~F~-~~G~v~~~~i   47 (98)
T d1wg4a_          16 FRVLVSGLPPSGSWQDLKDHMR-EAGDVCYADV   47 (98)
T ss_dssp             CEEEEECCCSSCCHHHHHHHHT-TSSCEEEEEE
T ss_pred             CEEEEECCCCCCCHHHHHHHHH-hhcccccccc
Confidence            3599999999999999999999 9999976554

>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolysin TIAR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.1  Score=29.88  Aligned_cols=32  Identities=13%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|+++|+ +||.|.+=++.
T Consensus        10 tl~V~nLp~~~te~~l~~~F~-~~G~i~~v~i~   41 (90)
T d2cqia1          10 TLYVGNLSRDVTEVLILQLFS-QIGPCKSCKMI   41 (90)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-HHSCEEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-hcCCceeeeee
Confidence            478999999999999999999 99999754443

>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 3 subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.94  E-value=0.12  Score=29.59  Aligned_cols=36  Identities=11%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeeccccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDEL   69 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~   69 (80)
                      .|-|.|+-+-+|-+-|.++|+ +||.|.+  +-++.++.
T Consensus        10 ~i~V~nLp~~~t~~~l~~~f~-~~G~v~~--v~i~~d~~   45 (90)
T d2cq0a1          10 TIRVTNLSEDTRETDLQELFR-PFGSISR--IYLAKDKT   45 (90)
T ss_dssp             EEEEESCCTTCCHHHHHTTST-TTCCEEE--EEEEECSS
T ss_pred             EEEEECCCCCCCHHHHHHHHH-Hhccccc--cccccccc
Confidence            478999999999999999999 9999965  44555543

>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein UBP1
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.90  E-value=0.092  Score=32.12  Aligned_cols=31  Identities=13%  Similarity=0.192  Sum_probs=26.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-+-|+.+|+ +||.|.+=.+
T Consensus        44 ~l~V~nLp~~~te~~l~~~F~-~~G~i~~v~i   74 (139)
T d1u6fa1          44 NLMVNYIPTTVDEVQLRQLFE-RYGPIESVKI   74 (139)
T ss_dssp             EEEEESCSTTCCHHHHHHHHH-HHSCEEEEEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hhcccccccc
Confidence            478999999999999999999 9999964333

>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.81  E-value=0.098  Score=29.86  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=25.7

Q ss_pred             EEEEecccceeeh-hhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITL-DVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTl-dVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .|-|.|+=+.+|- |.|+..|+ +||.|.+=.+.+
T Consensus         6 ~l~V~nLp~~~t~ed~l~~~F~-~~G~i~~v~i~~   39 (86)
T d2ghpa3           6 EIMIRNLSTELLDENLLRESFE-GFGSIEKINIPA   39 (86)
T ss_dssp             EEEEEEECTTTCCHHHHHHHHG-GGSCEEEEECCS
T ss_pred             EEEEECCCCCcccHHHHHHHHH-hhhhccceeeec
Confidence            4678998777774 68999999 999997555443

>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding region containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.16  Score=29.91  Aligned_cols=36  Identities=17%  Similarity=0.248  Sum_probs=29.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      =+|-|.|+-+-+|-|-|.++|+ +||.|.+  +-++.++
T Consensus        11 ~~lfV~nLp~~~te~~l~~~F~-~~G~i~~--v~i~~d~   46 (103)
T d2cqda1          11 TKIFVGGLPYHTTDASLRKYFE-GFGDIEE--AVVITDR   46 (103)
T ss_dssp             SEEEEECCCSSCCHHHHHHHHH-TTSCEEE--EEESCCS
T ss_pred             cEEEEeCCCCcCcHHHHHHHHh-hcccccc--eeccccc
Confidence            3688999999999999999999 9999965  3444443

>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.51  E-value=0.17  Score=29.20  Aligned_cols=32  Identities=13%  Similarity=0.182  Sum_probs=27.3

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|.++|+ +||.|.+=++.
T Consensus        11 tlfV~nLp~~~t~~~l~~~F~-~~G~v~~v~~~   42 (93)
T d1x5ua1          11 TVYVGGLDEKVSEPLLWELFL-QAGPVVNTHMP   42 (93)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH-TTSCEEEEECC
T ss_pred             EEEEeCCCCcCCHHHHHHHHH-HhCCcccccee
Confidence            477899999999999999999 99999754443

>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins A2/B1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.16  Score=30.24  Aligned_cols=32  Identities=13%  Similarity=0.298  Sum_probs=27.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +|-|-|+=|-+|-|-|...|+ +||.|..-.+.
T Consensus        22 ~lfVgnLp~~~te~~L~~~F~-~~G~i~~~~i~   53 (103)
T d1x4ba1          22 KLFIGGLSFETTEESLRNYYE-QWGKLTDCVVM   53 (103)
T ss_dssp             EEEEECCTTCCCHHHHHHHHT-SSCCCSEEEEE
T ss_pred             EEEEeCCCCcCCHHHHHHHHH-hhCcccceeec
Confidence            688999999999999999999 99999754443

>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Hu antigen D (Hud)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.87  E-value=0.16  Score=28.11  Aligned_cols=31  Identities=16%  Similarity=0.190  Sum_probs=26.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+=+-+|-+-|..+|+ +||.|.+=.+
T Consensus         4 ~l~V~nLp~~~te~~l~~~f~-~~G~v~~v~i   34 (82)
T d1fxla1           4 NLIVNYLPQNMTQEEFRSLFG-SIGEIESCKL   34 (82)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-TTSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-HhCCcccccc
Confidence            378999999999999999999 9999975444

>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Probable RNA-binding protein 19, Rbm19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.73  E-value=0.18  Score=28.22  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=27.4

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      +-|.|+=+-+|-+-|.++|+ +||.|.+-++...
T Consensus         1 LfV~nLp~~~t~~~l~~~F~-~~G~v~~v~i~~~   33 (85)
T d2cpfa1           1 LFIKNLNFSTTEETLKGVFS-KVGAIKSCTISKK   33 (85)
T ss_dssp             EEEESCCTTCCHHHHHHHHH-TTSCEEEEEEEEE
T ss_pred             CEEcCCCCCCCHHHHHHHHH-HhCCccccceecc
Confidence            35789989999999999999 9999976655443

>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.65  E-value=0.2  Score=27.57  Aligned_cols=33  Identities=6%  Similarity=0.137  Sum_probs=28.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      +|-|.|+-+-+|-+-|.+.|+ +||.+.+-++..
T Consensus         4 ~lfV~nLp~~~te~~l~~~F~-~~G~i~~~~~~~   36 (79)
T d1l3ka2           4 KIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIMT   36 (79)
T ss_dssp             EEEEECCTTTCCHHHHHHHHT-TTSCEEEEEEEE
T ss_pred             EEEECCCCCcCCHHHHHHHHH-Hhcccccccccc
Confidence            678999999999999999999 999998665543

>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.36  E-value=0.15  Score=29.11  Aligned_cols=31  Identities=13%  Similarity=0.125  Sum_probs=27.2

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.+-.+
T Consensus         2 rvfV~nlp~~~~~~~l~~~F~-~~G~v~~~~i   32 (87)
T d3begb1           2 RVVVSGLPPSGSWQDLKDHMR-EAGDVCYADV   32 (87)
T ss_dssp             CEEEEECCSSCCTTHHHHHHG-GGSCEEEEEE
T ss_pred             eEEEECCCCcCCHHHHHHHHh-hhcccccccc
Confidence            477999999999999999999 9999976543

>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cold-inducible RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.18  E-value=0.15  Score=28.94  Aligned_cols=34  Identities=12%  Similarity=0.203  Sum_probs=29.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|.+-.+...
T Consensus         7 kifV~nLp~~~t~~~l~~~F~-~~G~i~~~~~~~~   40 (90)
T d1x5sa1           7 KLFVGGLSFDTNEQSLEQVFS-KYGQISEVVVVKD   40 (90)
T ss_dssp             EEEEESCCTTCCHHHHHHHHH-HHSCCCEEEECCC
T ss_pred             EEEEECCCCcCCHHHHHHhhh-ccccccceeeccc
Confidence            478999999999999999999 9999986655543

>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.65  E-value=0.14  Score=28.45  Aligned_cols=32  Identities=3%  Similarity=-0.099  Sum_probs=27.6

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|-|.|+-+-+|-+-|..+|+ +||.|.+-++.
T Consensus         3 tl~v~nLp~~~t~~~l~~~f~-~~G~v~~~~~~   34 (81)
T d2ghpa1           3 TLWMTNFPPSYTQRNIRDLLQ-DINVVALSIRL   34 (81)
T ss_dssp             EEEEECCCTTCCHHHHHHHHH-HTTCCCCEEEC
T ss_pred             EEEEECCCCcCCHHHHHHHHH-HhCcEEeeeee
Confidence            467899999999999999999 99999765544

>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: TAR DNA-binding protein 43, TDP-43
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.24  Score=28.23  Aligned_cols=29  Identities=21%  Similarity=0.317  Sum_probs=26.0

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      +|-|.|+=+-+|-|-|..+|+ +||.|.+-
T Consensus         7 ~lfV~nLp~~~te~~L~~~F~-~~G~v~~v   35 (88)
T d1wf0a_           7 GVFVGRCTGDMTEDELREFFS-QYGDVMDV   35 (88)
T ss_dssp             EEEEESCCSSSCHHHHHHHST-TTSCCCEE
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-HcCCceEE
Confidence            567899999999999999999 99998753

>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor 3B subunit 4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.53  E-value=0.17  Score=28.21  Aligned_cols=28  Identities=25%  Similarity=0.349  Sum_probs=24.2

Q ss_pred             EEEecccceeehhhhhhhhcccccceeee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      |-|.|+-+-+|=+-|+++|+ +||.|.+-
T Consensus         1 lfV~nLp~~~te~~l~~~F~-~~G~i~~~   28 (83)
T d1x5ta1           1 IFIGNLDPEIDEKLLYDTFS-AFGVILQT   28 (83)
T ss_dssp             EEEECCCTTCCHHHHHHHHH-TTSCBSSC
T ss_pred             CEEcCCCCcCcHHHHHHHHH-HhCceeee
Confidence            35788889999999999999 99998654

>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Splicing factor, arginine/serine-rich 1, SFRS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.52  E-value=0.31  Score=28.02  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+=+-+|-+-|.++|+ +||.|..-.+
T Consensus        16 ~l~V~nLp~~~t~~~l~~~F~-~~G~v~~~~~   46 (95)
T d1x4aa1          16 RIYVGNLPPDIRTKDIEDVFY-KYGAIRDIDL   46 (95)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHh-cCCceEEEEe
Confidence            688999999999999999999 9999975443

>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.32  E-value=0.31  Score=27.23  Aligned_cols=35  Identities=14%  Similarity=0.357  Sum_probs=28.3

Q ss_pred             CCCCcEEEEEEecccceeehhhhhhhhcccccceeee
Q psy9172          24 GGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      +.|++ -.|-|.|+=|-+|-+-|.+.|+ .||.+...
T Consensus         5 g~p~~-~~l~v~nLp~~~~~~di~~~F~-~~~~~~~~   39 (86)
T d2cqpa1           5 GKPGP-TIIKVQNMPFTVSIDEILDFFY-GYQVIPGS   39 (86)
T ss_dssp             CCCSS-EEEEEESCCTTCCHHHHHHHTT-TSCCCTTT
T ss_pred             CCCCC-CEEEEECCCCCCCHHHHHHHHh-hcccceeE
Confidence            34443 3477999999999999999999 99998643

>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 41, RBM41
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.17  Score=29.15  Aligned_cols=40  Identities=18%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CCCCCCcEEEEEEecccceeehhhhhhhhcccccceeeeceee
Q psy9172          22 TQGGPNTVLRVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAM   64 (80)
Q Consensus        22 ~~~~pn~VLrviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~   64 (80)
                      .++.|++.  |-|.|+-+-+|-+-|..+|+ +||.|.+-.+..
T Consensus        13 ~~~~ps~t--l~V~nLp~~~t~~~l~~~f~-~~G~v~~~~~~~   52 (102)
T d2cpxa1          13 NPGEPNKV--LYLKNLSPRVTERDLVSLFA-RFQEKKGPPIQF   52 (102)
T ss_dssp             CCCSCCSE--EEEECCCTTCCHHHHHHHTH-HHHHSSSSCCEE
T ss_pred             CCCCCCCE--EEEeCCCCCCCHHHHHHHHh-hccceeeEEeec
Confidence            34567765  57889999999999999999 999998655544

>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Matrin 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.04  E-value=0.27  Score=28.32  Aligned_cols=44  Identities=16%  Similarity=0.019  Sum_probs=30.4

Q ss_pred             CCCCcEEEEEEecccce-eehhhhhhhhcccccceeeeceeeccccccCc
Q psy9172          24 GGPNTVLRVIIEHMLYP-ITLDVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        24 ~~pn~VLrviIeN~~YP-VTldVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      ..+++||  -|-|+-.- +|-+=|.++|+ +||.|.+  +.+..++--||
T Consensus         5 ~~~sr~v--~v~nl~~~~~t~~eL~~lF~-~fG~I~~--i~i~~~k~~af   49 (89)
T d1x4da1           5 VETRRVV--HIMDFQRGKNLRYQLLQLVE-PFGVISN--HLILNKINEAF   49 (89)
T ss_dssp             CCCCCEE--EEESCCCSSSHHHHHHTTTG-GGSCEEE--EEECSSSSCEE
T ss_pred             CCCCcEE--EEECCCCCcCCHHHHHHHHH-hhCCeEE--EEeeccceEEE
Confidence            3567775  57788653 67788999999 9999975  33444444454

>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Cleavage stimulation factor, 64 kda subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.76  E-value=0.19  Score=29.27  Aligned_cols=30  Identities=23%  Similarity=0.296  Sum_probs=26.0

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeece
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      |-|.|+-+-+|-+-|.++|+ +||.|.+=.+
T Consensus        11 l~V~nLp~~~te~~l~~~f~-~~G~i~~v~i   40 (104)
T d1p1ta_          11 VFVGNIPYEATEEQLKDIFS-EVGPVVSFRL   40 (104)
T ss_dssp             EEEESCCTTSCHHHHHHHHH-TTSCCSEEEE
T ss_pred             EEEECCCCcCCHHHHHHhhh-cccccccccc
Confidence            67899999999999999999 9999975433

>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins C1/C2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Heterogeneous nuclear ribonucleoproteins C1/C2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.72  E-value=0.16  Score=29.83  Aligned_cols=31  Identities=19%  Similarity=0.273  Sum_probs=25.2

Q ss_pred             EEEEeccc-ceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHML-YPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~-YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+- +-++-+-|..+|+ +||.|.+-++
T Consensus        17 ~lfV~nL~~~~~~~~~L~~~F~-~~G~i~~~~i   48 (98)
T d1wf2a_          17 RVFIGNLNTLVVKKSDVEAIFS-KYGKIVGCSV   48 (98)
T ss_dssp             CEEEEEECTTTCCHHHHHHSST-TSSCEEEEEE
T ss_pred             EEEEeCCCcccCCHHHHHHHHh-hcCCEEEEEE
Confidence            47899994 5677777999999 9999987655

>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: IGF-II mRNA-binding protein 2 isoform A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.56  E-value=0.14  Score=28.91  Aligned_cols=34  Identities=15%  Similarity=0.146  Sum_probs=28.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeec
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMP   65 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~   65 (80)
                      +|-|.|+-+-+|-+-|..+|+ +||.|..-.+..+
T Consensus         3 ~l~V~nLp~~~te~~L~~~F~-~~G~i~~~~~~~~   36 (80)
T d2cqha1           3 KLYIGNLSPAVTADDLRQLFG-DRKLPLAGQVLLK   36 (80)
T ss_dssp             CEEEECCCTTCCHHHHHHHHH-HTTCCCSSCEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-HhCcEEEeEEecc
Confidence            478999999999999999999 9999976655543

>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: HIV Tat-specific factor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.36  E-value=0.38  Score=28.29  Aligned_cols=43  Identities=26%  Similarity=0.346  Sum_probs=30.1

Q ss_pred             CCCcEEEEEEecccceeeh-----------hhhhhhhcccccceeeeceeeccccccCc
Q psy9172          25 GPNTVLRVIIEHMLYPITL-----------DVLYQFDNYKFGHAFSTSLAMPRDELAGF   72 (80)
Q Consensus        25 ~pn~VLrviIeN~~YPVTl-----------dVLhqiFs~~fG~Vlrq~~a~~~~~~~~~   72 (80)
                      .++.+|  .|.||+-|-.+           |-|...|+ +||.|..  +-++.++..||
T Consensus         6 ~~~r~v--~l~nmf~~~~~~~~~~~~~~i~edv~~~~~-~~G~V~~--v~~~~~~~~G~   59 (99)
T d2dita1           6 RHERVV--IIKNMFHPMDFEDDPLVLNEIREDLRVECS-KFGQIRK--LLLFDRHPDGV   59 (99)
T ss_dssp             CSCCEE--EEESSCCTTHHHHCSHHHHHHHHHHHHHGG-GTSCCSE--EEEETTCTTCE
T ss_pred             CCccEE--EEccCCCHHHhhcchHHHHHHHHHHHHHhc-CcccEEE--EeccCCCCccE
Confidence            445554  46899777554           34778999 9999964  55677777775

>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Poly(A)-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.28  E-value=0.24  Score=27.65  Aligned_cols=31  Identities=16%  Similarity=0.207  Sum_probs=25.9

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      +=|.|+-+-+|-|-|.++|+ +||.|.+=++.
T Consensus         3 lfV~nL~~~~te~~l~~~F~-~~G~i~~v~i~   33 (80)
T d1cvja1           3 LYVGDLHPDVTEAMLYEKFS-PAGPILSIRVC   33 (80)
T ss_dssp             EEEESCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             EEEeCCCCcCCHHHHHHHHH-HhCCEeEEEEE
Confidence            45789989999999999999 99999754444

>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA binding protein 23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.53  E-value=0.42  Score=28.15  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|-|.|+-|-+|=+-|...|+ .||.|.+  +-+.+++
T Consensus        20 tifV~nL~~~~te~~l~~~F~-~~G~V~~--v~i~~d~   54 (101)
T d2cq4a1          20 TVFCMQLAARIRPRDLEDFFS-AVGKVRD--VRIISDR   54 (101)
T ss_dssp             EEEEESCCTTCCHHHHHHHHT-TTSCEEE--EEECCSC
T ss_pred             EEEEECCCCCCCHHHHHHHHc-CCCeEEE--EEeeecC
Confidence            478899999999999999999 9999964  4444443

>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Neural RNA-binding protein Musashi-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.45  E-value=0.25  Score=26.78  Aligned_cols=37  Identities=11%  Similarity=0.223  Sum_probs=29.1

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDELA   70 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~~~   70 (80)
                      ||-|.|+=|-+|=|-|.++|+ +||.+..  +-+++++..
T Consensus         1 rlfV~nLp~~~te~~l~~~F~-~~G~i~~--~~~~~~~~~   37 (75)
T d2msta_           1 KIFVGGLSVNTTVEDVKHYFE-QFGKVDD--AMLMFDKTT   37 (75)
T ss_dssp             CEEEECCCSSCCHHHHHHHHH-TTSCCSE--ECCBCCTTC
T ss_pred             CEEEeCCCCCCCHHHHHHHHH-HhCCcce--eeeeeeccc
Confidence            467899999999999999999 9999864  344444443

>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Eukaryotic translation initiation factor 4B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.94  Score=25.96  Aligned_cols=27  Identities=11%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             EEEEEecccceeehhhhhhhhcccccce
Q psy9172          30 LRVIIEHMLYPITLDVLYQFDNYKFGHA   57 (80)
Q Consensus        30 LrviIeN~~YPVTldVLhqiFs~~fG~V   57 (80)
                      -.|-|.|+=+-+|-+-|..+|+ +||.+
T Consensus        16 ~~v~V~nLp~~~te~~l~~~f~-~~g~~   42 (104)
T d1wi8a_          16 YTAFLGNLPYDVTEESIKEFFR-GLNIS   42 (104)
T ss_dssp             EEEEEESCCSSCCHHHHHHHTT-TSCEE
T ss_pred             CEEEEeCCCCcCCHHHHHHHHH-Hhccc
Confidence            5788999999999999999999 99943

>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: RNA-binding protein 28
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.60  E-value=0.47  Score=26.72  Aligned_cols=31  Identities=16%  Similarity=0.240  Sum_probs=26.8

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      .|-|.|+-+-+|-|-|.++|+ +||.|.+-.+
T Consensus        10 tlfV~nLp~~~te~~l~~~f~-~~G~v~~~~~   40 (98)
T d1x4ha1          10 TVFIRNLSFDSEEEALGEVLQ-QFGDLKYVRV   40 (98)
T ss_dssp             CEEEESCCTTCCHHHHHHHHH-TTSCEEEEEC
T ss_pred             EEEEcCCCCcCCHHHHHHHHh-ccccceeeee
Confidence            478999999999999999999 9999864443

>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: E3 ubiquitin protein ligase CNOT4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.57  E-value=0.32  Score=27.83  Aligned_cols=33  Identities=12%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             EEEecccceeehhhh---hhhhcccccceeeeceeeccc
Q psy9172          32 VIIEHMLYPITLDVL---YQFDNYKFGHAFSTSLAMPRD   67 (80)
Q Consensus        32 viIeN~~YPVTldVL---hqiFs~~fG~Vlrq~~a~~~~   67 (80)
                      |-|.|+-+-+|-|-|   +..|+ +||.|.+=  -++.+
T Consensus        11 vyV~nLp~~~t~~~l~~~~e~F~-~~G~I~~v--~i~~~   46 (89)
T d2cpia1          11 VFVVGLSQRLADPEVLKRPEYFG-KFGKIHKV--VINNS   46 (89)
T ss_dssp             EEEEEECTTTCCHHHHHSTTTTT-TTSCEEEE--EEECC
T ss_pred             EEEECCCCccCHHHHHHHHHHhc-ccCCceEE--EEeec
Confidence            568888888988877   88999 99999754  44444

>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Lupus LA protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=0.59  Score=26.44  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=28.7

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeeceeecccc
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLAMPRDE   68 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a~~~~~   68 (80)
                      .|-|.|+=+-+|-+-|...|+ +||.|..-  -++.++
T Consensus         8 tvfV~nlp~~~te~~l~~~F~-~~G~v~~v--~l~~~~   42 (85)
T d1zh5a2           8 SVYIKGFPTDATLDDIKEWLE-DKGQVLNI--QMRRTL   42 (85)
T ss_dssp             EEEEECCCTTCCHHHHHHHHT-TSCCEEEE--EEEECT
T ss_pred             EEEEECCCCCCCHHHHHHHHH-Hhcccccc--eeeeec
Confidence            478999999999999999999 99998654  444444

>d1jmta_ d.58.7.3 (A:) U2AF35 (35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Splicing factor U2AF subunits
domain: U2AF35 (35 KDa subunit)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.46  E-value=0.079  Score=31.88  Aligned_cols=30  Identities=13%  Similarity=0.264  Sum_probs=24.0

Q ss_pred             EEEecccceeehhhhhhhhcccccceeeece
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +.|.|....++=|+|..+|+ +||.|.+=++
T Consensus        30 ~~v~~~~~~~~ed~l~e~f~-k~G~I~~v~I   59 (104)
T d1jmta_          30 VEMQEHYDEFFEEVFTEMEE-KYGEVEEMNV   59 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-HTCCEEEEEE
T ss_pred             HHhhhhhhhhhHHHHHHHhc-cCCCEEEEEe
Confidence            34566667788899999999 9999987655

>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nucleolin
species: Golden hamster (Mesocricetus auratus) [TaxId: 10036]

Probab=81.99  E-value=0.44  Score=27.37  Aligned_cols=28  Identities=14%  Similarity=0.069  Sum_probs=25.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFS   59 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlr   59 (80)
                      .|-|.|+-+.+|-+-|.++|+ +||.|.+
T Consensus        18 ~l~V~nL~~~~te~~l~~~F~-~~g~v~~   45 (96)
T d1fjca_          18 TLLAKNLSFNITEDELKEVFE-DALEIRL   45 (96)
T ss_dssp             EEEEESCCSSCCHHHHHHHHC-SEEEECC
T ss_pred             EEEEeCCCCCCCHHHHHHHHH-hccccee
Confidence            467999999999999999999 9999864

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.74  E-value=0.63  Score=28.40  Aligned_cols=31  Identities=13%  Similarity=0.214  Sum_probs=26.9

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeece
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSL   62 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~   62 (80)
                      +|-|.|+-|-+|-+-|...|+ +||.|.+=.+
T Consensus         8 ~lfV~nLp~~~te~~L~~~F~-~~G~v~~~~~   38 (183)
T d1u1qa_           8 KLFIGGLSFETTDESLRSHFE-QWGTLTDCVV   38 (183)
T ss_dssp             EEEEESCCTTCCHHHHHHHHG-GGSCEEEEEE
T ss_pred             EEEEECCCCCCCHHHHHHHHH-HcCCEEEEEe
Confidence            577899999999999999999 9999965443

>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: Nuclear ribonucleoprotein A1 (RNP A1, UP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.72  E-value=0.63  Score=28.41  Aligned_cols=32  Identities=6%  Similarity=0.148  Sum_probs=27.4

Q ss_pred             EEEEecccceeehhhhhhhhcccccceeeecee
Q psy9172          31 RVIIEHMLYPITLDVLYQFDNYKFGHAFSTSLA   63 (80)
Q Consensus        31 rviIeN~~YPVTldVLhqiFs~~fG~Vlrq~~a   63 (80)
                      .|.|.|+-+.+|-+-|..+|+ .||.|..=.+.
T Consensus        99 ~i~V~~lp~~~te~~L~~~f~-~~G~v~~~~i~  130 (183)
T d1u1qa_          99 KIFVGGIKEDTEEHHLRDYFE-QYGKIEVIEIM  130 (183)
T ss_dssp             EEEEECCCTTCCHHHHHHHHG-GGSCEEEEEEE
T ss_pred             eeEEccCCCcCCHHHHhhhhc-cCCceeeeeee
Confidence            578999999999999999999 99999754333

>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: APOBEC1 stimulating protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.27  E-value=0.48  Score=26.51  Aligned_cols=28  Identities=4%  Similarity=0.096  Sum_probs=24.5

Q ss_pred             EEEecccceeehhhhhhhhcccccceeee
Q psy9172          32 VIIEHMLYPITLDVLYQFDNYKFGHAFST   60 (80)
Q Consensus        32 viIeN~~YPVTldVLhqiFs~~fG~Vlrq   60 (80)
                      |-|.|+-+-+|-+-|.++|+ +||.+..-
T Consensus        11 l~V~nLp~~~te~~l~~~F~-~~g~i~~~   38 (86)
T d2cpda1          11 LYVRNLMLSTSEEMIEKEFN-NIKPGAVE   38 (86)
T ss_dssp             EEEESCCTTCCHHHHHHHHH-TTSTTCEE
T ss_pred             EEEcCCCCCCCHHHHHHhhc-ccceeeeE
Confidence            55899999999999999999 99988543