Psyllid ID: psy9199

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI
cccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEcccccHHHHHHccccEEEEccccEEEEEEccccEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEcccEEEHHHHHHHccccccccccccEEEEEEccccEEEEEEccccEEEEEEcccccccccc
ccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHcccccccccEEEEEEEccEEEEEEccccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEEEccccEcHHHHHHHcccEEEcccccccEEEEEccccEEEEEccccEEEEEccccHHHHHHHc
mttagmttthsshseqeppptqtvvpiqnhappqppahdpevdiiiNNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMklrkpyttasiwssgkitctgatsedQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKhraaeyepelhpgvtyritrpkatlkiFSTGgitvtacndsnkipvqi
mttagmttthsshseqepppTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLrqialngvnveyrrengmvtmklrkpyttasiwssgkitctgatsedqSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAaeyepelhpgvtyritrPKATLKIFStggitvtacndsnkipvqi
MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI
*****************************************VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACN*********
*******************************************IIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDS***PVQI
**********************TVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI
****************************************EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI***I
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTTAGMTTTHSSHSEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPVQI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query204 2.2.26 [Sep-21-2011]
Q6DIY4186 TATA box-binding protein- yes N/A 0.759 0.833 0.641 5e-55
Q5U385186 TATA box-binding protein- yes N/A 0.784 0.860 0.608 2e-54
Q9W6Z2186 TATA box-binding protein- N/A N/A 0.759 0.833 0.634 2e-54
Q9YGV8183 TATA box-binding protein- yes N/A 0.769 0.857 0.632 4e-54
Q5R7U8190 TATA box-binding protein- yes N/A 0.769 0.826 0.632 2e-53
P62340186 TATA box-binding protein- yes N/A 0.769 0.844 0.632 2e-53
Q4R848186 TATA box-binding protein- N/A N/A 0.769 0.844 0.632 2e-53
P62380186 TATA box-binding protein- yes N/A 0.769 0.844 0.632 2e-53
Q32LB1186 TATA box-binding protein- yes N/A 0.769 0.844 0.632 2e-53
Q6SJ95350 TATA box-binding protein- no N/A 0.931 0.542 0.404 9e-38
>sp|Q6DIY4|TBPL1_XENTR TATA box-binding protein-like protein 1 OS=Xenopus tropicalis GN=tbpl1 PE=2 SV=1 Back     alignment and function desciption
 Score =  213 bits (543), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 122/156 (78%), Gaps = 1/156 (0%)

Query: 39  DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGK 98
           D  +DIII NVVC F  RCHLNLR+IAL G+NV Y+RE G V MKLRKP  TA+IWSSGK
Sbjct: 6   DVALDIIITNVVCVFRTRCHLNLRKIALEGLNVIYKREVGKVLMKLRKPRITATIWSSGK 65

Query: 99  ITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR 158
           I CTGATSE+++K+ ARR AR LQ+LGF+ +FT F+VVNVL  C+MPF IR+ +F++++R
Sbjct: 66  IICTGATSEEEAKVGARRLARSLQKLGFQVKFTEFKVVNVLAVCTMPFEIRLAEFTKQNR 125

Query: 159 -AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
             A YEPELHP V YRI   + TL+IFSTG ITVT 
Sbjct: 126 PHASYEPELHPAVCYRIKSLRTTLQIFSTGSITVTG 161
Does not bind the TATA box. Has DNA-binding ability. Members of the TBP family are differentially required to regulate transcription and development during early embryogenesis. Particularly regulates genes that have a role in catabolism.
Xenopus tropicalis (taxid: 8364)
>sp|Q5U385|TBPL1_DANRE TATA box-binding protein-like protein 1 OS=Danio rerio GN=tbpl1 PE=2 SV=1 Back     alignment and function description
>sp|Q9W6Z2|TBPL1_XENLA TATA box-binding protein-like protein 1 OS=Xenopus laevis GN=tbpl1 PE=2 SV=1 Back     alignment and function description
>sp|Q9YGV8|TBPL1_CHICK TATA box-binding protein-like protein 1 OS=Gallus gallus GN=TBPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q5R7U8|TBPL1_PONAB TATA box-binding protein-like protein 1 OS=Pongo abelii GN=TBPL1 PE=2 SV=1 Back     alignment and function description
>sp|P62340|TBPL1_MOUSE TATA box-binding protein-like protein 1 OS=Mus musculus GN=Tbpl1 PE=2 SV=1 Back     alignment and function description
>sp|Q4R848|TBPL1_MACFA TATA box-binding protein-like protein 1 OS=Macaca fascicularis GN=TBPL1 PE=2 SV=1 Back     alignment and function description
>sp|P62380|TBPL1_HUMAN TATA box-binding protein-like protein 1 OS=Homo sapiens GN=TBPL1 PE=1 SV=1 Back     alignment and function description
>sp|Q32LB1|TBPL1_BOVIN TATA box-binding protein-like protein 1 OS=Bos taurus GN=TBPL1 PE=2 SV=1 Back     alignment and function description
>sp|Q6SJ95|TBPL2_MOUSE TATA box-binding protein-like protein 2 OS=Mus musculus GN=Tbpl2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
189237795262 PREDICTED: similar to tata-box binding p 0.862 0.671 0.718 6e-74
157136872 584 tata-box binding protein [Aedes aegypti] 0.843 0.294 0.745 4e-73
195134909 656 GI14331 [Drosophila mojavensis] gi|19390 0.784 0.243 0.788 2e-72
357625409 314 tata-box binding protein [Danaus plexipp 0.745 0.484 0.809 3e-72
195393646 711 GJ19385 [Drosophila virilis] gi|19414997 0.764 0.219 0.802 7e-72
195164313 987 GL16412 [Drosophila persimilis] gi|19410 0.769 0.159 0.797 6e-71
198471801 1037 GA14764 [Drosophila pseudoobscura pseudo 0.769 0.151 0.797 6e-71
242015292289 trf2 protein, putative [Pediculus humanu 0.799 0.564 0.760 8e-71
194769912 1683 GF21727 [Drosophila ananassae] gi|190622 0.759 0.092 0.801 1e-70
195438615 1222 GK16294 [Drosophila willistoni] gi|19416 0.764 0.127 0.789 1e-70
>gi|189237795|ref|XP_972962.2| PREDICTED: similar to tata-box binding protein [Tribolium castaneum] gi|270007920|gb|EFA04368.1| hypothetical protein TcasGA2_TC014666 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 130/181 (71%), Positives = 153/181 (84%), Gaps = 5/181 (2%)

Query: 18  PPPTQTVVPIQNHAPPQPPAHD-----PEVDIIINNVVCSFSVRCHLNLRQIALNGVNVE 72
           PP       ++  + P+  A D     PE+DI+INNVVCSFSVRCHLNLR+IALNG+NVE
Sbjct: 22  PPLNGYGGDVEEVSAPEAAAGDSAVEEPEIDIMINNVVCSFSVRCHLNLREIALNGINVE 81

Query: 73  YRRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTN 132
           YR+ENG +TMKLR+PYTTASIWSSGK+TCTGATSE Q+KIAARR+ARCLQ+LGFK RF N
Sbjct: 82  YRKENGKITMKLRRPYTTASIWSSGKVTCTGATSELQAKIAARRFARCLQKLGFKVRFNN 141

Query: 133 FRVVNVLGTCSMPFAIRILQFSEKHRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVT 192
           +RVVNVLGTCSMPFAI+I  FSE+H+ A+YEPELHPGVTY++  PKATLKIFSTG +TVT
Sbjct: 142 YRVVNVLGTCSMPFAIKINSFSERHKEADYEPELHPGVTYKLQSPKATLKIFSTGSVTVT 201

Query: 193 A 193
           A
Sbjct: 202 A 202

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|157136872|ref|XP_001663841.1| tata-box binding protein [Aedes aegypti] gi|108869850|gb|EAT34075.1| AAEL013653-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195134909|ref|XP_002011879.1| GI14331 [Drosophila mojavensis] gi|193909133|gb|EDW08000.1| GI14331 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|357625409|gb|EHJ75865.1| tata-box binding protein [Danaus plexippus] Back     alignment and taxonomy information
>gi|195393646|ref|XP_002055464.1| GJ19385 [Drosophila virilis] gi|194149974|gb|EDW65665.1| GJ19385 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195164313|ref|XP_002022993.1| GL16412 [Drosophila persimilis] gi|194105055|gb|EDW27098.1| GL16412 [Drosophila persimilis] Back     alignment and taxonomy information
>gi|198471801|ref|XP_001355729.2| GA14764 [Drosophila pseudoobscura pseudoobscura] gi|198146086|gb|EAL32788.2| GA14764 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|242015292|ref|XP_002428298.1| trf2 protein, putative [Pediculus humanus corporis] gi|212512883|gb|EEB15560.1| trf2 protein, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|194769912|ref|XP_001967045.1| GF21727 [Drosophila ananassae] gi|190622840|gb|EDV38364.1| GF21727 [Drosophila ananassae] Back     alignment and taxonomy information
>gi|195438615|ref|XP_002067228.1| GK16294 [Drosophila willistoni] gi|194163313|gb|EDW78214.1| GK16294 [Drosophila willistoni] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query204
FB|FBgn0261793 1715 Trf2 "TATA box binding protein 0.882 0.104 0.691 1.9e-62
ZFIN|ZDB-GENE-040520-2186 tbpl1 "TBP-like 1" [Danio reri 0.784 0.860 0.608 5.8e-50
UNIPROTKB|Q9YGV8183 TBPL1 "TATA box-binding protei 0.769 0.857 0.632 9.5e-50
UNIPROTKB|Q6DIY4186 tbpl1 "TATA box-binding protei 0.754 0.827 0.645 9.5e-50
UNIPROTKB|Q9W6Z2186 tbpl1 "TATA box-binding protei 0.754 0.827 0.638 4.1e-49
UNIPROTKB|Q32LB1186 TBPL1 "TATA box-binding protei 0.769 0.844 0.632 8.5e-49
UNIPROTKB|P62380186 TBPL1 "TATA box-binding protei 0.769 0.844 0.632 8.5e-49
MGI|MGI:1339946186 Tbpl1 "TATA box binding protei 0.769 0.844 0.632 8.5e-49
RGD|1597456186 Tbpl1 "TBP-like 1" [Rattus nor 0.769 0.844 0.632 8.5e-49
UNIPROTKB|Q7Z6U2163 TBPL1 "TATA box-binding protei 0.754 0.944 0.638 1.8e-48
FB|FBgn0261793 Trf2 "TATA box binding protein-related factor 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 651 (234.2 bits), Expect = 1.9e-62, P = 1.9e-62
 Identities = 128/185 (69%), Positives = 146/185 (78%)

Query:    14 SEQEPPPTQTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEY 73
             +E E   +    PI  H P     H  E+DI+INNVVCSFSV CHL LR+IAL G NVEY
Sbjct:  1257 AEDEEESSNNAKPIDLHQPIADNEH--ELDIVINNVVCSFSVGCHLKLREIALQGSNVEY 1314

Query:    74 RRENGMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNF 133
             RRENGMVTMKLR PYTTASIWSSG+ITCTGATSE  +K+AARRYARCL +LGF  RF NF
Sbjct:  1315 RRENGMVTMKLRHPYTTASIWSSGRITCTGATSESMAKVAARRYARCLGKLGFPTRFLNF 1374

Query:   134 RVVNVLGTCSMPFAIRILQFSEKHRA-AEYEPELHPGVTYRITRP--KATLKIFSTGGIT 190
             R+VNVLGTCSMP+AI+I+ FSE+HR  A YEPELHPGVTY++  P  KATLKIFSTG +T
Sbjct:  1375 RIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKATLKIFSTGSVT 1434

Query:   191 VTACN 195
             VTA +
Sbjct:  1435 VTAAS 1439
GO:0005669 "transcription factor TFIID complex" evidence=ISS
GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=ISS;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS
GO:0006366 "transcription from RNA polymerase II promoter" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0001075 "RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity involved in preinitiation complex assembly" evidence=IPI
GO:0005667 "transcription factor complex" evidence=IDA
GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP;IDA
GO:0003677 "DNA binding" evidence=IEA
GO:0001674 "female germ cell nucleus" evidence=IDA
GO:0001673 "male germ cell nucleus" evidence=IDA
GO:0005700 "polytene chromosome" evidence=IDA
GO:0035277 "spiracle morphogenesis, open tracheal system" evidence=IMP
GO:0035071 "salivary gland cell autophagic cell death" evidence=IMP
GO:0035075 "response to ecdysone" evidence=IMP
GO:0035209 "pupal development" evidence=IMP
GO:0048812 "neuron projection morphogenesis" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
ZFIN|ZDB-GENE-040520-2 tbpl1 "TBP-like 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q9YGV8 TBPL1 "TATA box-binding protein-like protein 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DIY4 tbpl1 "TATA box-binding protein-like protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q9W6Z2 tbpl1 "TATA box-binding protein-like protein 1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q32LB1 TBPL1 "TATA box-binding protein-like protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P62380 TBPL1 "TATA box-binding protein-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1339946 Tbpl1 "TATA box binding protein-like 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1597456 Tbpl1 "TBP-like 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z6U2 TBPL1 "TATA box-binding protein-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P13393TBP_YEASTNo assigned EC number0.42030.75980.6458yesN/A
P62340TBPL1_MOUSENo assigned EC number0.63290.76960.8440yesN/A
Q9YGV8TBPL1_CHICKNo assigned EC number0.63290.76960.8579yesN/A
P62380TBPL1_HUMANNo assigned EC number0.63290.76960.8440yesN/A
Q42808TBP_SOYBNNo assigned EC number0.45390.73520.75yesN/A
Q6DIY4TBPL1_XENTRNo assigned EC number0.64100.75980.8333yesN/A
Q32LB1TBPL1_BOVINNo assigned EC number0.63290.76960.8440yesN/A
P17871TBP_SCHPONo assigned EC number0.42380.73030.6450yesN/A
Q5U385TBPL1_DANRENo assigned EC number0.60860.78430.8602yesN/A
Q5R7U8TBPL1_PONABNo assigned EC number0.63290.76960.8263yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
cd04517174 cd04517, TLF, TBP-like factors (TLF; also called T 3e-81
cd00652174 cd00652, TBP_TLF, TATA box binding protein (TBP): 3e-75
cd04516174 cd04516, TBP_eukaryotes, eukaryotic TATA box bindi 1e-54
PLN00062179 PLN00062, PLN00062, TATA-box-binding protein; Prov 2e-50
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 1e-33
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 1e-30
pfam0035286 pfam00352, TBP, Transcription factor TFIID (or TAT 5e-26
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 4e-23
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 1e-21
COG2101185 COG2101, SPT15, TATA-box binding protein (TBP), co 1e-10
PRK00394179 PRK00394, PRK00394, transcription factor; Reviewed 1e-09
cd04518174 cd04518, TBP_archaea, archaeal TATA box binding pr 3e-08
PRK00394 179 PRK00394, PRK00394, transcription factor; Reviewed 7e-07
COG2101 185 COG2101, SPT15, TATA-box binding protein (TBP), co 4e-06
cd04517 174 cd04517, TLF, TBP-like factors (TLF; also called T 8e-06
cd04518 174 cd04518, TBP_archaea, archaeal TATA box binding pr 2e-05
>gnl|CDD|239953 cd04517, TLF, TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information 
 Score =  239 bits (611), Expect = 3e-81
 Identities = 102/154 (66%), Positives = 124/154 (80%), Gaps = 2/154 (1%)

Query: 42  VDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRENGMVTMKLRKPYTTASIWSSGKITC 101
           +DI+I NVVC FS+RCH++LR++AL G NVEY      VTM+LR+P  TAS+WSSGKIT 
Sbjct: 1   LDILIVNVVCQFSLRCHIDLRKLALAGRNVEYNPRYPKVTMRLREPRATASVWSSGKITI 60

Query: 102 TGATSEDQSKIAARRYARCLQRLGFK-ARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA- 159
           TGATSE+++K AARR AR LQ+LGFK  RF+NFRVVNVL TCSMPF IR+ + + K+R+ 
Sbjct: 61  TGATSEEEAKQAARRAARLLQKLGFKVVRFSNFRVVNVLATCSMPFPIRLDELAAKNRSS 120

Query: 160 AEYEPELHPGVTYRITRPKATLKIFSTGGITVTA 193
           A YEPELHPGV YRIT P+ATL IFSTG +TVT 
Sbjct: 121 ASYEPELHPGVVYRITGPRATLSIFSTGSVTVTG 154

TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters. Length = 174
>gnl|CDD|238352 cd00652, TBP_TLF, TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|239952 cd04516, TBP_eukaryotes, eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|177693 PLN00062, PLN00062, TATA-box-binding protein; Provisional Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|201174 pfam00352, TBP, Transcription factor TFIID (or TATA-binding protein, TBP) Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>gnl|CDD|234746 PRK00394, PRK00394, transcription factor; Reviewed Back     alignment and domain information
>gnl|CDD|225012 COG2101, SPT15, TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>gnl|CDD|239953 cd04517, TLF, TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>gnl|CDD|239954 cd04518, TBP_archaea, archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 204
KOG3302|consensus200 100.0
cd04516174 TBP_eukaryotes eukaryotic TATA box binding protein 100.0
PLN00062179 TATA-box-binding protein; Provisional 100.0
COG2101185 SPT15 TATA-box binding protein (TBP), component of 100.0
cd04518174 TBP_archaea archaeal TATA box binding protein (TBP 100.0
PRK00394179 transcription factor; Reviewed 100.0
cd00652174 TBP_TLF TATA box binding protein (TBP): Present in 100.0
cd04517174 TLF TBP-like factors (TLF; also called TLP, TRF, T 100.0
PF0035286 TBP: Transcription factor TFIID (or TATA-binding p 99.95
PF0035286 TBP: Transcription factor TFIID (or TATA-binding p 99.94
COG2101185 SPT15 TATA-box binding protein (TBP), component of 99.93
PRK00394179 transcription factor; Reviewed 99.93
cd04518174 TBP_archaea archaeal TATA box binding protein (TBP 99.92
cd04516 174 TBP_eukaryotes eukaryotic TATA box binding protein 99.9
cd00652174 TBP_TLF TATA box binding protein (TBP): Present in 99.89
PLN00062179 TATA-box-binding protein; Provisional 99.88
cd04517174 TLF TBP-like factors (TLF; also called TLP, TRF, T 99.87
KOG3302|consensus200 99.7
COG4871193 Uncharacterized protein conserved in archaea [Func 96.62
PF1185881 DUF3378: Domain of unknown function (DUF3378); Int 95.94
PF1185881 DUF3378: Domain of unknown function (DUF3378); Int 95.51
PRK12475338 thiamine/molybdopterin biosynthesis MoeB-like prot 91.18
TIGR00716 284 rnhC ribonuclease HIII. Two types of ribonuclease 90.82
PRK00996 304 ribonuclease HIII; Provisional 89.75
PRK00996 304 ribonuclease HIII; Provisional 89.51
TIGR00716 284 rnhC ribonuclease HIII. Two types of ribonuclease 89.47
COG1039 297 RnhC Ribonuclease HIII [DNA replication, recombina 88.12
PRK07688339 thiamine/molybdopterin biosynthesis ThiF/MoeB-like 86.2
COG1039 297 RnhC Ribonuclease HIII [DNA replication, recombina 85.78
COG4871193 Uncharacterized protein conserved in archaea [Func 82.79
>KOG3302|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-63  Score=415.65  Aligned_cols=180  Identities=41%  Similarity=0.750  Sum_probs=173.9

Q ss_pred             CCccccCCCCCCCCCCCCCCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceE
Q psy9199          22 QTVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKIT  100 (204)
Q Consensus        22 ~~~~~i~e~~~~~~~~~~~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKiv  100 (204)
                      .|+.+++++..++.+ ++..+++.++||||+++++|+|||.+||..++|+||+|+. |+|+||+++|++|++||+||||+
T Consensus         2 ~~~~~~~~~~~~~~~-~~~~i~~~l~nivc~~~~~c~ldLk~ial~~~N~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~   80 (200)
T KOG3302|consen    2 ADPESIYENVAKLAD-IDSGLDPTLQNIVCTVNLNCKLDLKEIALHARNAEYNPKRFAAVIMRIRSPRTTALIFSSGKIV   80 (200)
T ss_pred             CCcccccccccCccc-cccccceEEEeEEEEEeccceecHHHHhhhccccccCcccccEEEEEEcCCceEEEEecCCcEE
Confidence            467889999999887 7889999999999999999999999999999999999886 99999999999999999999999


Q ss_pred             EeecCCHHHHHHHHHHHHHHHHHcCCccccceeeEEEEEEEEeCCCccChHHHHHHcc-ccccCCCCCceeEEEeCCCce
Q psy9199         101 CTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-AAEYEPELHPGVTYRITRPKA  179 (204)
Q Consensus       101 itGakS~e~a~~a~~k~~~~L~~lG~~v~~~~f~v~NIvat~~~~~~I~L~~la~~~~-~~~YePe~fPgliyr~~~pk~  179 (204)
                      ||||+|++++|.|+++++|+||++||+++|.+|++|||||||||||+|+|++++..|+ +++||||+||||+|||.+|++
T Consensus        81 ctgA~se~~ar~aark~aRilqkLgf~~~f~~fki~nv~asc~vpF~IrLe~~~~~h~~~ssYepel~PgliYrm~~pkv  160 (200)
T KOG3302|consen   81 CTGAKSEDSARLAARKYARILQKLGFPVKFRDFKINNVVASCDVPFPIRLEGLALRHPVFSSYEPELFPGLIYRMVKPKV  160 (200)
T ss_pred             EeccCCHHHHHHHHHHHHHHHHHcCCCceehheeeEEEEEEEeccceeehhHhhhhCCcccccCcccCceeEEEecCCcE
Confidence            9999999999999999999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             EEEEeccCcEEEEecCCCCcccc
Q psy9199         180 TLKIFSTGGITVTACNDSNKIPV  202 (204)
Q Consensus       180 t~lIF~sGkivitGak~~~~~~~  202 (204)
                      +++||+||||++|||++.++++.
T Consensus       161 ~l~IF~tG~VvvtgA~~~~~i~~  183 (200)
T KOG3302|consen  161 VLLIFVTGKVVVTGAKVREETYE  183 (200)
T ss_pred             EEEEecCCEEEEEecccHHHHHH
Confidence            99999999999999999988753

>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>PLN00062 TATA-box-binding protein; Provisional Back     alignment and domain information
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>PRK00394 transcription factor; Reviewed Back     alignment and domain information
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ] Back     alignment and domain information
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ] Back     alignment and domain information
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription] Back     alignment and domain information
>PRK00394 transcription factor; Reviewed Back     alignment and domain information
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription Back     alignment and domain information
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription Back     alignment and domain information
>PLN00062 TATA-box-binding protein; Provisional Back     alignment and domain information
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans Back     alignment and domain information
>KOG3302|consensus Back     alignment and domain information
>COG4871 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3 Back     alignment and domain information
>PF11858 DUF3378: Domain of unknown function (DUF3378); InterPro: IPR024568 Ribonuclease HIII 3 Back     alignment and domain information
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>PRK00996 ribonuclease HIII; Provisional Back     alignment and domain information
>TIGR00716 rnhC ribonuclease HIII Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated Back     alignment and domain information
>COG1039 RnhC Ribonuclease HIII [DNA replication, recombination, and repair] Back     alignment and domain information
>COG4871 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1vok_A200 Arabidopsis Thaliana Tbp (Dimer) Length = 200 3e-36
1vto_A190 1.9 A Resolution Refined Structure Of Tbp Recognizi 3e-36
1vtl_E186 Co-Crystal Structure Of Tbp Recognizing The Minor G 4e-36
1rm1_A240 Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex L 1e-35
1tbp_A180 Crystal Structure Of Yeast Tata-Binding Protein And 1e-35
1ytb_A180 Crystal Structure Of A Yeast TbpTATA-Box Complex Le 1e-35
1jfi_C185 Crystal Structure Of The Nc2-Tbp-Dna Ternary Comple 9e-35
1nvp_A181 Human TfiiaTBPDNA COMPLEX Length = 181 1e-34
1c9b_B180 Crystal Structure Of A Human Tbp Core Domain-Human 1e-34
1tgh_A185 Tata Binding Protein (Tbp)DNA COMPLEX Length = 185 1e-34
1cdw_A179 Human Tbp Core Domain Complexed With Dna Length = 1 5e-34
3oc3_C218 Crystal Structure Of The Mot1 N-Terminal Domain In 3e-32
3eik_A218 Double Stranded Dna Binding Protein Length = 218 3e-32
2z8u_A188 Methanococcus Jannaschii Tbp Length = 188 4e-17
2z8u_A 188 Methanococcus Jannaschii Tbp Length = 188 5e-04
1mp9_A198 Tbp From A Mesothermophilic Archaeon, Sulfolobus Ac 8e-14
1d3u_A181 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+T 3e-11
1pcz_A191 Structure Of Tata-Binding Protein Length = 191 3e-11
1ais_A182 Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA- 3e-11
>pdb|1VOK|A Chain A, Arabidopsis Thaliana Tbp (Dimer) Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  147 bits (372), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 69/152 (45%), Positives = 102/152 (67%), Gaps = 2/152 (1%)
Query: 46  INNVVCSFSVRCHLNLRQIALNGVNVEYR-RENGMVTMKLRKPYTTASIWSSGKITCTGA 104
           + N+V + ++ C L+L+ IAL   N EY  +    V M++R+P TTA I++SGK+ CTGA
Sbjct: 25  LQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGA 84
Query: 105 TSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHRA-AEYE 163
            SED SK+AAR+YAR +Q+LGF A+F +F++ N++G+C + F IR+   +  H A + YE
Sbjct: 85  KSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIRLEGLAYSHAAFSSYE 144
Query: 164 PELHPGVTYRITRPKATLKIFSTGGITVTACN 195
           PEL PG+ YR+  PK  L IF +G I +T   
Sbjct: 145 PELFPGLIYRMKVPKIVLLIFVSGKIVITGAK 176
>pdb|1VTO|A Chain A, 1.9 A Resolution Refined Structure Of Tbp Recognizing The Minor Groove Of Tataaaag Length = 190 Back     alignment and structure
>pdb|1VTL|E Chain E, Co-Crystal Structure Of Tbp Recognizing The Minor Groove Of A Tata Element Length = 186 Back     alignment and structure
>pdb|1RM1|A Chain A, Structure Of A Yeast TfiiaTBPTATA-Box Dna Complex Length = 240 Back     alignment and structure
>pdb|1TBP|A Chain A, Crystal Structure Of Yeast Tata-Binding Protein And Model For Interaction With Dna Length = 180 Back     alignment and structure
>pdb|1YTB|A Chain A, Crystal Structure Of A Yeast TbpTATA-Box Complex Length = 180 Back     alignment and structure
>pdb|1JFI|C Chain C, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex Length = 185 Back     alignment and structure
>pdb|1NVP|A Chain A, Human TfiiaTBPDNA COMPLEX Length = 181 Back     alignment and structure
>pdb|1C9B|B Chain B, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib Core Domain Complex Bound To An Extended, Modified Adenoviral Major Late Promoter (Admlp) Length = 180 Back     alignment and structure
>pdb|1TGH|A Chain A, Tata Binding Protein (Tbp)DNA COMPLEX Length = 185 Back     alignment and structure
>pdb|1CDW|A Chain A, Human Tbp Core Domain Complexed With Dna Length = 179 Back     alignment and structure
>pdb|3OC3|C Chain C, Crystal Structure Of The Mot1 N-Terminal Domain In Complex With Tbp Length = 218 Back     alignment and structure
>pdb|3EIK|A Chain A, Double Stranded Dna Binding Protein Length = 218 Back     alignment and structure
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp Length = 188 Back     alignment and structure
>pdb|2Z8U|A Chain A, Methanococcus Jannaschii Tbp Length = 188 Back     alignment and structure
>pdb|1MP9|A Chain A, Tbp From A Mesothermophilic Archaeon, Sulfolobus Acidocaldarius Length = 198 Back     alignment and structure
>pdb|1D3U|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA- Box Complex From Pyrococcus Woesei Length = 181 Back     alignment and structure
>pdb|1PCZ|A Chain A, Structure Of Tata-Binding Protein Length = 191 Back     alignment and structure
>pdb|1AIS|A Chain A, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box Complex From Pyrococcus Woesei Length = 182 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query204
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 3e-57
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 2e-14
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 4e-57
3eik_A 218 Tata-box-binding protein; DNA-binding, initiation 4e-13
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 4e-11
1mp9_A198 Tata-binding protein; transcription regulation, DN 1e-56
1mp9_A198 Tata-binding protein; transcription regulation, DN 5e-14
1mp9_A 198 Tata-binding protein; transcription regulation, DN 2e-12
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 9e-55
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 3e-14
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 2e-53
1rm1_A 240 Tata-box binding protein; yeast TFIIA, TBP protein 7e-19
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 2e-11
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 2e-51
1ytb_A 180 Protein (tata binding protein (TBP)); protein-DNA 9e-13
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 2e-11
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
 Score =  177 bits (451), Expect = 3e-57
 Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 2/164 (1%)

Query: 39  DPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSG 97
             +V + I N+V S  +   L+L ++     N +Y  E    +   L  P     I+SSG
Sbjct: 4   MSKVKLRIENIVASVDLFAQLDLEKVLDLCPNSKYNPEEFPGIICHLDDPKVALLIFSSG 63

Query: 98  KITCTGATSEDQSKIAARRYARCLQRLGFKA-RFTNFRVVNVLGTCSMPFAIRILQFSEK 156
           K+  TGA S    + A  + A+ L+ +G K  R     V N++ +  +     +   +  
Sbjct: 64  KLVVTGAKSVQDIERAVAKLAQKLKSIGVKFKRAPQIDVQNMVFSGDIGREFNLDVVALT 123

Query: 157 HRAAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKI 200
               EYEPE  PGV YR+  PK+ + +FS+G I  +        
Sbjct: 124 LPNCEYEPEQFPGVIYRVKEPKSVILLFSSGKIVCSGAKSEADA 167
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Length = 182 Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Length = 218 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Length = 198 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Length = 188 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Length = 240 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Length = 180 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 100.0
1ytb_A180 Protein (tata binding protein (TBP)); protein-DNA 100.0
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 100.0
1mp9_A198 Tata-binding protein; transcription regulation, DN 100.0
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 100.0
1rm1_A240 Tata-box binding protein; yeast TFIIA, TBP protein 100.0
1rm1_A 240 Tata-box binding protein; yeast TFIIA, TBP protein 99.97
2z8u_A188 Tata-box-binding protein; transcription, DNA-bindi 99.93
1mp9_A198 Tata-binding protein; transcription regulation, DN 99.93
1ais_A182 TBP, protein (tata-binding protein); hyperthermoph 99.93
1ytb_A 180 Protein (tata binding protein (TBP)); protein-DNA 99.92
3eik_A218 Tata-box-binding protein; DNA-binding, initiation 99.87
2d0b_A 310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 91.02
3vn5_A 257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 90.14
2d0b_A 310 RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hyd 89.7
3vn5_A 257 RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {A 87.22
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Back     alignment and structure
Probab=100.00  E-value=2.4e-62  Score=416.95  Aligned_cols=189  Identities=37%  Similarity=0.661  Sum_probs=156.0

Q ss_pred             eecCCCCCCCCCCC--------CccccCCCCCCCCCCCCCCCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ce
Q psy9199           9 THSSHSEQEPPPTQ--------TVVPIQNHAPPQPPAHDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GM   79 (204)
Q Consensus         9 ~~~~~~~~~~~~~~--------~~~~i~e~~~~~~~~~~~~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~   79 (204)
                      .|..||..+-|+-+        ++++++|+.+..+     .+.++|+||||+++++|+|||++||..++|+||||++ +.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~i~~~I~NIVas~~l~~~ldL~~ia~~~~n~eYePe~Fpg   79 (218)
T 3eik_A            5 HHHHHSSGLVPRGSHMMDAPDISYEHQETSVPNRS-----GIIPTLQNVVATVNLSCKLDLKNIALRARNAEYNPKRFAA   79 (218)
T ss_dssp             ----------------------------------------CCSCEEEEEEEEEECSSCCCHHHHHHHCTTEECCTTTCSS
T ss_pred             cccccccCcccCCcccccCCCCChhHhhcccCCCC-----CCceEEEEEEEEEECCCccCHHHHHhhCCCcEEcCccCce
Confidence            44555655555443        6777777765443     5678999999999999999999999999999999998 55


Q ss_pred             EEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHHHHHHcCCccccceeeEEEEEEEEeCCCccChHHHHHHcc-
Q psy9199          80 VTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRVVNVLGTCSMPFAIRILQFSEKHR-  158 (204)
Q Consensus        80 vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~~L~~lG~~v~~~~f~v~NIvat~~~~~~I~L~~la~~~~-  158 (204)
                      ++||+++|++++|||+||||+||||||+++++.|+++++++|+++|+++++.+|+||||||||+|+|+|||++||..|+ 
T Consensus        80 lv~Rl~~Pk~t~LIF~SGKiV~TGAkS~e~a~~A~~ki~~~L~~lG~~v~~~~fkIqNIvas~dl~f~I~Le~la~~~~~  159 (218)
T 3eik_A           80 VIMRIREPKTTALIFASGKMVITGAKSEKSSRMAAQRYAKIIHKLGFNATFDDFKIQNIVSSCDIKFSIRLEGLAYAHSN  159 (218)
T ss_dssp             EEEEETTTTEEEEECTTSEEEEEEESSHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEEEEEECSSCBCHHHHHHHSTT
T ss_pred             EEEEecCCcEEEEEECCCeEEEEecCCHHHHHHHHHHHHHHHHHcCCCcccccceEEEEEEEEECCCcCcHHHHHHhccC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999885 


Q ss_pred             ccccCCCCCceeEEEeCCCceEEEEeccCcEEEEecCCCCcccc
Q psy9199         159 AAEYEPELHPGVTYRITRPKATLKIFSTGGITVTACNDSNKIPV  202 (204)
Q Consensus       159 ~~~YePe~fPgliyr~~~pk~t~lIF~sGkivitGak~~~~~~~  202 (204)
                      +++||||+||||+|||.+|++|++||+||||||||||++++++.
T Consensus       160 ~~~YEPE~fPGliyR~~~pkvt~lIF~SGKiviTGaks~~d~~~  203 (218)
T 3eik_A          160 YCSYEPELFPGLIYRMVKPKIVLLIFVSGKIVLTGAKVRDDIYQ  203 (218)
T ss_dssp             TEECCTTTSSSEEEEETTTTEEEEECTTSEEEEEEESSHHHHHH
T ss_pred             CcEECCccCceEEEEcCCCCEEEEEeCCCeEEEEecCCHHHHHH
Confidence            99999999999999999999999999999999999999998753
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1rm1_A Tata-box binding protein; yeast TFIIA, TBP protein, ATA-box DNA, transcription/DNA complex; 2.50A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>2z8u_A Tata-box-binding protein; transcription, DNA-binding protein, transcription factor, transcription regulation; 1.90A {Methanococcus jannaschii} Back     alignment and structure
>1mp9_A Tata-binding protein; transcription regulation, DNA-binding protein, transcription factor, DNA binding protein; 2.00A {Sulfolobus acidocaldarius} SCOP: d.129.1.1 d.129.1.1 Back     alignment and structure
>1ais_A TBP, protein (tata-binding protein); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: d.129.1.1 d.129.1.1 PDB: 1d3u_A* 1pcz_A Back     alignment and structure
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ... Back     alignment and structure
>3eik_A Tata-box-binding protein; DNA-binding, initiation factor, nucleus, transcription; 1.90A {Encephalitozoon cuniculi} PDB: 3oci_A 3oc3_C Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure
>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A 3asm_A Back     alignment and structure
>3vn5_A RNAse HIII, ribonuclease HIII; hydrolase; 1.98A {Aquifex aeolicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 204
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 6e-36
d1qnaa199 d.129.1.1 (A:17-115) TATA-box binding protein (TBP 9e-18
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 2e-30
d1aisa192 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), 2e-20
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 7e-30
d1mp9a192 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), 4e-20
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 2e-28
d1mp9a2101 d.129.1.1 (A:97-197) TATA-box binding protein (TBP 2e-19
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 6e-28
d1aisa289 d.129.1.1 (A:93-181) TATA-box binding protein (TBP 4e-19
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 3e-20
d1qnaa283 d.129.1.1 (A:116-198) TATA-box binding protein (TB 8e-16
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  119 bits (301), Expect = 6e-36
 Identities = 45/99 (45%), Positives = 68/99 (68%), Gaps = 1/99 (1%)

Query: 38  HDPEVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRRE-NGMVTMKLRKPYTTASIWSS 96
           H   +   + N+V + ++ C L+L+ IAL   N EY  +    V M++R+P TTA I++S
Sbjct: 1   HPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFAS 60

Query: 97  GKITCTGATSEDQSKIAARRYARCLQRLGFKARFTNFRV 135
           GK+ CTGA SED SK+AAR+YAR +Q+LGF A+F +F++
Sbjct: 61  GKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKI 99
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 92 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 92 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 101 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 89 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 83 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query204
d1qnaa199 TATA-box binding protein (TBP), C-terminal domain 100.0
d1mp9a192 TATA-box binding protein (TBP), C-terminal domain 99.96
d1aisa192 TATA-box binding protein (TBP), C-terminal domain 99.96
d1aisa289 TATA-box binding protein (TBP), C-terminal domain 99.96
d1aisa289 TATA-box binding protein (TBP), C-terminal domain 99.95
d1aisa192 TATA-box binding protein (TBP), C-terminal domain 99.95
d1mp9a2101 TATA-box binding protein (TBP), C-terminal domain 99.95
d1qnaa283 TATA-box binding protein (TBP), C-terminal domain 99.95
d1mp9a192 TATA-box binding protein (TBP), C-terminal domain 99.95
d1mp9a2101 TATA-box binding protein (TBP), C-terminal domain 99.95
d1qnaa199 TATA-box binding protein (TBP), C-terminal domain 99.94
d1qnaa283 TATA-box binding protein (TBP), C-terminal domain 99.93
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: TBP-like
superfamily: TATA-box binding protein-like
family: TATA-box binding protein (TBP), C-terminal domain
domain: TATA-box binding protein (TBP), C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=6e-33  Score=208.54  Aligned_cols=95  Identities=46%  Similarity=0.818  Sum_probs=91.2

Q ss_pred             CCceEEEEEEEEEeeCCccChHHHHhcCCCceeeCCC-ceEEEEecCCcEEEEEeCCCceEEeecCCHHHHHHHHHHHHH
Q psy9199          41 EVDIIINNVVCSFSVRCHLNLRQIALNGVNVEYRREN-GMVTMKLRKPYTTASIWSSGKITCTGATSEDQSKIAARRYAR  119 (204)
Q Consensus        41 ~~~i~I~NVVas~~l~~~ldL~~la~~~~n~eYePe~-g~vi~Rl~~P~~tvlIF~SGKivitGakS~e~a~~a~~k~~~  119 (204)
                      .+.++|+||||+++++++|||++||..++|++|||++ +.++||+++|+++++||+||||+||||||+++++.|++++++
T Consensus         4 ~~~p~i~NiVas~~l~~~idL~~la~~~~n~eYePe~fpgli~R~~~P~~t~lIF~SGKivitGaks~~~~~~a~~~i~~   83 (99)
T d1qnaa1           4 GIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEDFSKMAARKYAR   83 (99)
T ss_dssp             SCCCEEEEEEEEEECCSCCCHHHHHHHCSSEEECTTTCSEEEEEETTTTEEEEEETTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEEEEEEcCCcccHHHHHhhCCCCEECcccCCEEEEEeCCCcEEEEEEcCCEEEEeccCCHHHHHHHHHHHHH
Confidence            5678999999999999999999999999999999998 555899999999999999999999999999999999999999


Q ss_pred             HHHHcCCccccceeeE
Q psy9199         120 CLQRLGFKARFTNFRV  135 (204)
Q Consensus       120 ~L~~lG~~v~~~~f~v  135 (204)
                      +|+++|+++++.+|+|
T Consensus        84 ~l~k~g~~v~~~~f~i   99 (99)
T d1qnaa1          84 IVQKLGFPAKFKDFKI   99 (99)
T ss_dssp             HHHHTTCCCCCEEEEE
T ss_pred             HHHHcCCCCcccccCC
Confidence            9999999999999987
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1mp9a2 d.129.1.1 (A:97-197) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Back     information, alignment and structure
>d1qnaa1 d.129.1.1 (A:17-115) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure