Psyllid ID: psy9275

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MEWRALKALKGKSTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMSMTNSTLSV
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEcccEEEEEEcccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccHHHEEHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHcHEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccEEEEEEEEcccccEEEEEEccccEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEEEccEccc
Coil and Loop (DISEMBL)
MEWRAlkalkgksTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALkgnatfsesaappgsdraKLEVLEKVIEGYRQRMEHIeadqglvcvipgqnseKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLAsmyadgpdenllfqsTEGQLNLIETDYSKVLKPLldlhlgrhhsiPMLLSALTQELFQRQTmsmtnstlsv
Flexible Loop (DISEMBL)
mewralkalkgkstlkvLVILVelgylssnrererdellrekelkekvdhLTYQMEWRALKGnatfsesaappgsdraklEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKaaklnnkikslelqgKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMSMTNSTLSV
Low Complexity Region (SEG)
MEWRALKALKGKSTLKVLVILVELGYLSSNrererdellrekelkekVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMSMTNSTLSV
Disordered region (IsUnstruct)
*****LKALKGKSTLKVLVILVELGYLS*******************VDHLTYQMEWRALK*******************EVLEKVIEGYRQRMEHIEADQGLVCVIP************************************************LREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMY*****************NLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELF**************
Disordered Region (DISOPRED)
****ALK***********************************************************************************************************************A**********************************************************AASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTM*********
Disordered Region (DISEMBL)
MEWRALKALKGKSTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNATF**********RAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQT**********
Disordered Region (DISPRO)
***RALK****KSTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNA********PGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMSMTNSTL**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEWRALKALKGKSTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKxxxxxxxxxxxxxxxxxxxxxQGLVCVIPGQNSxxxxxxxxxxxxxxxxxxxxxVKQMAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxFRETVYLLFGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMSMTNSTLSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
Q9Y6D9	718	Mitotic spindle assembly	yes	N/A	0.792	0.313	0.324	1e-22
Q9WTX8	717	Mitotic spindle assembly	yes	N/A	0.390	0.154	0.426	3e-19
Q80YF0	717	Mitotic spindle assembly	yes	N/A	0.390	0.154	0.426	4e-19
Q6C452	704	Spindle assembly checkpoi	yes	N/A	0.616	0.248	0.291	2e-09
P87169	689	Spindle assembly checkpoi	yes	N/A	0.450	0.185	0.284	2e-07

>sp|Q9Y6D9|MD1L1_HUMAN Mitotic spindle assembly checkpoint protein MAD1 OS=Homo sapiens GN=MAD1L1 PE=1 SV=2

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 142/259 (54%), Gaps = 34/259 (13%)

Query: 45  KEKVDHLTYQMEWRALKGNATFSESA---APPGSDRAKLEVLEKVIEGYRQRMEH----I 97
           K++ D L  +ME + LK  ++ +E +   +   +D  +L+V E  +EG R R+E     +
Sbjct: 467 KQRADML--EMELKMLKSQSSSAEQSFLFSREEADTLRLKVEE--LEGERSRLEEEKRML 522

Query: 98  EA-----------DQGLVCVIP-GQNSEKVAQQKVQE----LQMEADNNRETVKQMAGMQ 141
           EA           DQ    V+    N   VA+Q+++E    LQ E +  R  ++    M+
Sbjct: 523 EAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR---AME 579

Query: 142 KLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGY 201
           +  +    LE     L    + A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY
Sbjct: 580 RGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGY 639

Query: 202 KVD-RTNCMYKLASMYADGPDENLLFQSTE---GQLNLIETDYSKVLKPLLDLHLGRHHS 257
           ++D  T   Y+L S+YA+ P + L+F++T     ++ L+ET++S  +  L+++HL R  S
Sbjct: 640 QIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDS 699

Query: 258 IPMLLSALTQELFQRQTMS 276
           IP  LS+LT ELF RQT++
Sbjct: 700 IPAFLSSLTLELFSRQTVA 718

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. May recruit MAD2L1 to unattached kinetochores. Has a role in the correct positioning of the septum. Required for anchoring MAD2L1 to the nuclear periphery. Binds to the TERT promoter and represses telomerase expression, possibly by interfering with MYC binding.
Homo sapiens (taxid: 9606)

>sp|Q9WTX8|MD1L1_MOUSE Mitotic spindle assembly checkpoint protein MAD1 OS=Mus musculus GN=Mad1l1 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 77/115 (66%), Gaps = 4/115 (3%)

Query: 164 AKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGPDE 222
           A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY++D  T   Y+L S YA+   +
Sbjct: 601 AELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTESQYRLTSRYAEHQTD 660

Query: 223 NLLFQSTE---GQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQT 274
            L+F++T     ++ L+ET++S+ +  L++LHL +  SIP  LSALT ELF RQT
Sbjct: 661 CLIFKATGPSGSKMQLLETEFSRSVPELIELHLLQQDSIPAFLSALTIELFSRQT 715

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. May recruit MAD2L1 to unattached kinetochores. Has a role in the correct positioning of the septum. Required for anchoring MAD2L1 to the nuclear periphery. Binds to the TERT promoter and represses telomerase expression, possibly by interfering with MYC binding.

Mus musculus (taxid: 10090)

>sp|Q80YF0|MD1L1_CRIGR Mitotic spindle assembly checkpoint protein MAD1 OS=Cricetulus griseus GN=MAD1L1 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 49/115 (42%), Positives = 77/115 (66%), Gaps = 4/115 (3%)

Query: 164 AKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGPDE 222
           A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY++D  T   Y+L S YA+   +
Sbjct: 601 AELRKQVESAELKNQRLKEVFQTKIQEFRKVCYTLTGYQIDVTTENQYRLTSRYAEHQSD 660

Query: 223 NLLFQSTE---GQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQT 274
            L+F++T     ++ L+ET++S+ +  L++LHL +  SIP  LSALT ELF RQT
Sbjct: 661 CLIFKATGPSGSKMQLLETEFSRSVPELIELHLLQQDSIPAFLSALTIELFSRQT 715

Component of the spindle-assembly checkpoint that prevents the onset of anaphase until all chromosomes are properly aligned at the metaphase plate. May recruit MAD2L1 to unattached kinetochores. Has a role in the correct positioning of the septum. Required for anchoring MAD2L1 to the nuclear periphery. Binds to the TERT promoter and represses telomerase expression, possibly by interfering with MYC binding.

Cricetulus griseus (taxid: 10029)

>sp|Q6C452|MAD1_YARLI Spindle assembly checkpoint component MAD1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=MAD1 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 96/209 (45%), Gaps = 34/209 (16%)

Query: 82  VLEKVIEGYRQRMEHIEADQGLVCVI------PGQNSEKVAQQKVQELQME------ADN 129
           +L K  E    R+E +E  Q     I      P    E V Q  +  L+ E       + 
Sbjct: 505 LLAKTKEALEARLESLEKSQESRVRILELRENPTSRHEAVKQSMLDTLKAENEALMGKNE 564

Query: 130 NRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQ 189
           N ++V Q A +++     K LELQG R           +K+ S E   +RL+EV+   S 
Sbjct: 565 NSKSVPQ-ASLER-----KQLELQGVR-----------DKLASTEKSYQRLKEVFSVKSL 607

Query: 190 EFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLF---QSTEGQL-NLIETDYSKVL 244
           EFRE VY L GY++D   N   K+ SMYA   +++  F    + +GQ   +I++  +   
Sbjct: 608 EFREAVYALTGYQIDILRNKKVKVTSMYAQSDEDSFTFLPDPNHKGQFAGVIDSPLTDEF 667

Query: 245 KPLLDLHLGRHHSIPMLLSALTQELFQRQ 273
             ++D  +      P  L+AL  EL++R+
Sbjct: 668 SNIVDYWVKDKKDFPCFLAALNLELYERK 696

Central component of the spindle assembly checkpoint.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P87169|MAD1_SCHPO Spindle assembly checkpoint component mad1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mad1 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 64/130 (49%), Gaps = 2/130 (1%)

Query: 144 NSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKV 203
           + K+  L +Q  ++ E  KA  L  ++   E + +RL+E++   S EFRE V+ LFGYK+
Sbjct: 559 DKKVDCLPIQSFKIAE-RKALDLKKEVAEREKRIQRLKEIFSVKSLEFREAVFSLFGYKL 617

Query: 204 D-RTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262
           D   N   ++ S Y+   +   +F      + L+        + L+        +IP +L
Sbjct: 618 DFMPNGSVRVTSTYSREDNTAFIFDGESSTMKLVGNPSGPEFERLIRFWCDERKTIPGML 677

Query: 263 SALTQELFQR 272
           +ALT EL  +
Sbjct: 678 AALTLELLDK 687

Central component of the spindle assembly checkpoint. Has a role in the correct positioning of the septum. Required for anchoring mad2 to the nuclear periphery.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
328723456	729	PREDICTED: mitotic spindle assembly chec	0.725	0.282	0.351	4e-27
148230881	718	spindle checkpoint protein Xmad1 [Xenopu	0.676	0.267	0.362	1e-22
4583429	718	spindle checkpoint protein Xmad1 [Xenopu	0.676	0.267	0.362	1e-22
345487358	691	PREDICTED: mitotic spindle assembly chec	0.746	0.306	0.318	3e-22
55742174	718	MAD1 mitotic arrest deficient-like 1 [Xe	0.676	0.267	0.348	4e-22
157105184	643	hypothetical protein AaeL_AAEL014423 [Ae	0.478	0.211	0.384	1e-21
270010044	731	hypothetical protein TcasGA2_TC009389 [T	0.482	0.187	0.390	2e-21
383856106	679	PREDICTED: mitotic spindle assembly chec	0.658	0.275	0.329	4e-21
189238701	1657	PREDICTED: similar to Rs1 CG2173-PA [Tri	0.482	0.082	0.390	4e-21
119607625	447	MAD1 mitotic arrest deficient-like 1 (ye	0.792	0.503	0.324	5e-21

>gi|328723456|ref|XP_001947620.2| PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like [Acyrthosiphon pisum]

 Score =  128 bits (321), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 50/256 (19%)

Query: 33  RERDELLRE-KELKEKVDHLTYQMEWRALKGNATFSESAA-----PPGSDRAKLEVLEKV 86
           +E++EL+ + K+L+ K   L  Q++ RALKG+    E+        P S           
Sbjct: 503 KEKEELINKYKQLEAKCIDLNDQIDHRALKGDFNLKETKVLHFKMNPAS----------- 551

Query: 87  IEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSK 146
            EG+                   QN    A+Q++++L+      +E +  M   Q ++++
Sbjct: 552 -EGFNH----------------YQNELAKAKQEIEKLKERIKAMQEGI-SMNLTQVVDNR 593

Query: 147 IK---SLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKV 203
           ++   S E++G           L  K+KS E+Q +RLREV+K +SQEFRE+VY L G+KV
Sbjct: 594 VETNASQEVEG-----------LKEKLKSQEIQNQRLREVFKKSSQEFRESVYTLLGFKV 642

Query: 204 DR-TNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL 262
           D   N MY+L S +A   ++NL+FQ  EG +NL+ET +SK ++ ++ LHLG+  SIP+LL
Sbjct: 643 DGLQNNMYRLTSQFAFHEEDNLMFQLNEGSMNLLETPFSKTIEEMIALHLGQQRSIPVLL 702

Query: 263 SALTQELFQRQTMSMT 278
           S+LT +LF +Q+M MT
Sbjct: 703 SSLTIDLFSKQSMIMT 718

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|148230881|ref|NP_001080972.1| spindle checkpoint protein Xmad1 [Xenopus laevis] gi|49115165|gb|AAH73210.1| Mad1-A protein [Xenopus laevis]

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 123/218 (56%), Gaps = 26/218 (11%)

Query: 75  SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQN---------SEKVAQQK---VQE 122
           ++R +LE   K++E    R+E +   QG  C  P +          + K  QQ+   V+ 
Sbjct: 511 AERGRLEEENKILE---MRLESLNL-QG--CYDPSRTKVIHLSLNPASKAKQQRTDTVRH 564

Query: 123 LQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLRE 182
           LQ E D  RE V+ + G  ++  K   LE  G   +   + A+L  +++S EL+ +RLRE
Sbjct: 565 LQEECDKLREIVRILEGGAQIPDK---LEATGSP-QSSQELAELKKQVESAELKNQRLRE 620

Query: 183 VYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQ---STEGQLNLIET 238
           V++    EFR   Y+L GY++D  T   Y+L SMY +  ++NLLF+   S+ G++ L+ET
Sbjct: 621 VFQTKIHEFRTACYMLTGYRIDITTENQYRLTSMYGEHKEDNLLFKASGSSGGKMQLLET 680

Query: 239 DYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
           D+S  L+  +DLHL   +SIP  LSA+T +LF RQT +
Sbjct: 681 DFSLTLRDFIDLHLHHQNSIPAFLSAVTLDLFSRQTFA 718

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|4583429|gb|AAD25081.1| spindle checkpoint protein Xmad1 [Xenopus laevis]

 Score =  112 bits (281), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/218 (36%), Positives = 123/218 (56%), Gaps = 26/218 (11%)

Query: 75  SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQN---------SEKVAQQK---VQE 122
           ++R +LE   K++E    R+E +   QG  C  P +          + K  QQ+   V+ 
Sbjct: 511 AERGRLEEENKILE---MRLESLNL-QG--CYDPSRTKVIHLSLNPASKAKQQRTDTVRH 564

Query: 123 LQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLRE 182
           LQ E D  RE V+ + G  ++  K   LE  G   +   + A+L  +++S EL+ +RLRE
Sbjct: 565 LQEECDKLREIVRILEGGAQIPDK---LEATGSP-QSSQELAELKKQVESAELKNQRLRE 620

Query: 183 VYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQ---STEGQLNLIET 238
           V++    EFR   Y+L GY++D  T   Y+L SMY +  ++NLLF+   S+ G++ L+ET
Sbjct: 621 VFQTKIHEFRTACYMLTGYRIDITTENQYRLTSMYGEHKEDNLLFKASGSSGGKMQLLET 680

Query: 239 DYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
           D+S  L+  +DLHL   +SIP  LSA+T +LF RQT +
Sbjct: 681 DFSLTLRDFIDLHLHHQNSIPAFLSAVTLDLFSRQTFA 718

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345487358|ref|XP_001604630.2| PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like [Nasonia vitripennis]

 Score =  111 bits (278), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 130/261 (49%), Gaps = 49/261 (18%)

Query: 52  TYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQN 111
           TY+ E  A + N T       P     ++ +LE+ IEGYR+ +  +E+D   VC   G  
Sbjct: 440 TYEKEITAYQSNET-------PTVTNERIPMLERAIEGYRELVAKLESDLE-VCDGKGLK 491

Query: 112 SE-KVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKI 170
            E K  + +++ LQ E ++     + + G   +N++I   +L    L E    AK N  +
Sbjct: 492 EENKKLKAEIERLQGELEH-----RALKGDFNINTRILHYKLNPLALAEQEAEAKQNALL 546

Query: 171 KSLE--------------------LQGK--------------RLREVYKAASQEFRETVY 196
           + +E                    LQ K              RL+E +KA+SQE+R+  Y
Sbjct: 547 QEVEQLRAVVASGNPSGVPAVSSSLQAKEIAELQQKHEIKIARLKEAFKASSQEYRQACY 606

Query: 197 LLFGYKVDRTN-CMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRH 255
            LFG++VDRT    YKL+S YAD PD+ L F   +  +N+IET +S  L   ++ +L   
Sbjct: 607 QLFGWRVDRTKEGQYKLSSQYADSPDDYLFFIVNDDGVNMIETPFSATLSAFIERYLKIQ 666

Query: 256 HSIPMLLSALTQELFQRQTMS 276
           HS+PM L+A+  ELF +QT++
Sbjct: 667 HSVPMFLNAVQSELFDQQTVA 687

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|55742174|ref|NP_001006927.1| MAD1 mitotic arrest deficient-like 1 [Xenopus (Silurana) tropicalis] gi|49899935|gb|AAH76947.1| MAD1 mitotic arrest deficient-like 1 (yeast) [Xenopus (Silurana) tropicalis]

 Score =  111 bits (277), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/218 (34%), Positives = 124/218 (56%), Gaps = 26/218 (11%)

Query: 75  SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIP--------GQNSEKVAQQK----VQE 122
           ++R +LE   K++E    R+E +   QG  C  P        G N    A+Q+    V++
Sbjct: 511 AERGRLEEENKILE---MRLERLNL-QG--CYDPSKTKVIHLGLNPSSQAKQQRAETVRQ 564

Query: 123 LQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLRE 182
           LQ E    RE V+ + G  ++  K+++       ++   +  +L  +++S EL+ +RLRE
Sbjct: 565 LQEECSKLRELVRILEGGAQIPDKLEA----AGSVQSSQELTELKKQLESAELKNQRLRE 620

Query: 183 VYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQ---STEGQLNLIET 238
           V++    EFR   Y+L GY++D  T   Y+L SMYA+  ++NLLF+   S+ G++ L+ET
Sbjct: 621 VFQTKIHEFRTACYMLTGYRIDITTENQYRLTSMYAEQKEDNLLFKASGSSGGKMQLLET 680

Query: 239 DYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
           D+S  L+  +DLHL   +SIP  LSA+T +LF RQT +
Sbjct: 681 DFSLTLRDFIDLHLHHQNSIPAFLSAVTLDLFSRQTFA 718

Source: Xenopus (Silurana) tropicalis

Species: Xenopus (Silurana) tropicalis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157105184|ref|XP_001648755.1| hypothetical protein AaeL_AAEL014423 [Aedes aegypti] gi|108869070|gb|EAT33295.1| AAEL014423-PA, partial [Aedes aegypti]

 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/156 (38%), Positives = 96/156 (61%), Gaps = 20/156 (12%)

Query: 140 MQKLNSKIKSLELQGKRLRE--------------VYKAAKLNN---KIKSLELQGKRLRE 182
           ++KL ++I+ L+++ +RL E                   +LNN   +++SLE + + ++E
Sbjct: 484 IEKLQAEIERLKIRNRRLEEGNEELTMRLNDSNMTMNVMELNNLKAQVQSLEAKNQHIKE 543

Query: 183 VYKAASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTEGQ--LNLIETD 239
           +YK+AS EFRE  Y+LFGY+VDR  N  Y+++SMYA+  +E L F+  E    LN++ET 
Sbjct: 544 IYKSASNEFREVCYMLFGYRVDRVGNTNYRISSMYAESEEEYLNFRLNESGTVLNMLETA 603

Query: 240 YSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTM 275
           YS+ +  ++  HLG H S+P  LS LT +LF R T+
Sbjct: 604 YSESITDMVQTHLGTHGSLPAFLSTLTLDLFNRTTV 639

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270010044|gb|EFA06492.1| hypothetical protein TcasGA2_TC009389 [Tribolium castaneum]

 Score =  108 bits (271), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 14/151 (9%)

Query: 140 MQKLNSKIKSLELQGKRLREVYKAAKLNN------------KIKSLELQGKRLREVYKAA 187
           ++KL  +I+ L+ + K + E   A+KL+             ++K+ E+Q +RL+E +K +
Sbjct: 574 VEKLEQEIEKLKRKLKNMSEGIDASKLSESMCPQEVQALKEQVKTHEVQTQRLKEYFKTS 633

Query: 188 SQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQ-STEGQLNLIETDYSKVLK 245
            QEFR  +Y+L GYK+DRT   +YKL ++YA+  ++ L FQ ++EG LNL+E ++S  L+
Sbjct: 634 FQEFRNVIYMLLGYKIDRTPTSLYKLTNIYAERAEDQLCFQLNSEGDLNLLENEFSASLE 693

Query: 246 PLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
            +++LHL    SIP+ LSALT +LF   TM+
Sbjct: 694 QMVNLHLRHQKSIPVFLSALTIDLFNNSTMA 724

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856106|ref|XP_003703551.1| PREDICTED: mitotic spindle assembly checkpoint protein MAD1-like [Megachile rotundata]

 Score =  108 bits (269), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 47/234 (20%)

Query: 44  LKEKVDHLTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGL 103
           LKE+V+ L  ++E RALKG+  F+ +A                      R+ H   +   
Sbjct: 488 LKEEVERLKGELEHRALKGD--FNCNA----------------------RILHYSMN--- 520

Query: 104 VCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKA 163
               P   +E+ A++K + L  E +  R  V Q  G     S +++ E+    L++ +  
Sbjct: 521 ----PAAIAEQQAEEKQKALLRELEELRAKVAQ-GGTNATTSSLQAQEI--AELKQTH-- 571

Query: 164 AKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRTN-CMYKLASMYADGPDE 222
                     E++  RL+E +KA+SQE+R+  Y LFG++VDRT    YKL S YA+ PD+
Sbjct: 572 ----------EIKIARLKEAFKASSQEYRQACYQLFGWRVDRTKEGRYKLFSQYAESPDD 621

Query: 223 NLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
            L FQ +   ++L+ET +S  L+ L++ HL R HS+PM L+A+  +LF +QTM+
Sbjct: 622 YLFFQISGDGVDLLETAFSATLESLMEQHLHRQHSVPMFLNAVQTDLFNQQTMT 675

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189238701|ref|XP_968537.2| PREDICTED: similar to Rs1 CG2173-PA [Tribolium castaneum]

 Score =  107 bits (268), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/151 (39%), Positives = 97/151 (64%), Gaps = 14/151 (9%)

Query: 140 MQKLNSKIKSLELQGKRLREVYKAAKLNN------------KIKSLELQGKRLREVYKAA 187
           ++KL  +I+ L+ + K + E   A+KL+             ++K+ E+Q +RL+E +K +
Sbjct: 574 VEKLEQEIEKLKRKLKNMSEGIDASKLSESMCPQEVQALKEQVKTHEVQTQRLKEYFKTS 633

Query: 188 SQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQ-STEGQLNLIETDYSKVLK 245
            QEFR  +Y+L GYK+DRT   +YKL ++YA+  ++ L FQ ++EG LNL+E ++S  L+
Sbjct: 634 FQEFRNVIYMLLGYKIDRTPTSLYKLTNIYAERAEDQLCFQLNSEGDLNLLENEFSASLE 693

Query: 246 PLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
            +++LHL    SIP+ LSALT +LF   TM+
Sbjct: 694 QMVNLHLRHQKSIPVFLSALTIDLFNNSTMA 724

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119607625|gb|EAW87219.1| MAD1 mitotic arrest deficient-like 1 (yeast), isoform CRA_a [Homo sapiens]

 Score =  107 bits (268), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 142/259 (54%), Gaps = 34/259 (13%)

Query: 45  KEKVDHLTYQMEWRALKGNATFSESA---APPGSDRAKLEVLEKVIEGYRQRMEH----I 97
           K++ D L  +ME + LK  ++ +E +   +   +D  +L+V E  +EG R R+E     +
Sbjct: 196 KQRADML--EMELKMLKSQSSSAEQSFLFSREEADTLRLKVEE--LEGERSRLEEEKRML 251

Query: 98  EA-----------DQGLVCVIP-GQNSEKVAQQKVQE----LQMEADNNRETVKQMAGMQ 141
           EA           DQ    V+    N   VA+Q+++E    LQ E +  R  ++    M+
Sbjct: 252 EAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR---AME 308

Query: 142 KLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGY 201
           +  +    LE     L    + A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY
Sbjct: 309 RGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGY 368

Query: 202 KVD-RTNCMYKLASMYADGPDENLLFQSTE---GQLNLIETDYSKVLKPLLDLHLGRHHS 257
           ++D  T   Y+L S+YA+ P + L+F++T     ++ L+ET++S  +  L+++HL R  S
Sbjct: 369 QIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDS 428

Query: 258 IPMLLSALTQELFQRQTMS 276
           IP  LS+LT ELF RQT++
Sbjct: 429 IPAFLSSLTLELFSRQTVA 447

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
UNIPROTKB|C9JP81	266	MAD1L1 "Mitotic spindle assemb	0.686	0.733	0.331	1.8e-23
UNIPROTKB|B3KR41	626	MAD1L1 "cDNA FLJ33640 fis, clo	0.697	0.316	0.331	2.5e-23
UNIPROTKB|Q9Y6D9	718	MAD1L1 "Mitotic spindle assemb	0.697	0.275	0.331	3.4e-23
UNIPROTKB|A7MB59	717	MAD1L1 "Uncharacterized protei	0.711	0.281	0.322	1.2e-22
UNIPROTKB|F1PAV9	717	MAD1L1 "Uncharacterized protei	0.707	0.280	0.328	6.5e-22
ZFIN|ZDB-GENE-040426-1081	717	mad1l1 "MAD1 mitotic arrest de	0.683	0.270	0.319	1.1e-21
UNIPROTKB|Q80YF0	717	MAD1L1 "Mitotic spindle assemb	0.693	0.274	0.323	5.7e-20
RGD|1596881	717	Mad1l1 "MAD1 mitotic arrest de	0.693	0.274	0.318	1.2e-19
MGI|MGI:1341857	717	Mad1l1 "MAD1 mitotic arrest de	0.693	0.274	0.318	1.9e-19
FB|FBgn0026326	730	Mad1 [Drosophila melanogaster	0.785	0.305	0.322	8.9e-19

UNIPROTKB|C9JP81 MAD1L1 "Mitotic spindle assembly checkpoint protein MAD1" [Homo sapiens (taxid:9606)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 69/208 (33%), Positives = 119/208 (57%)

Query:    76 DRAKLEVLEKVIEGYRQRME-HIEADQGLVCVIP-GQNSEKVAQQKVQE----LQMEADN 129
             +R++LE  ++++E   +R     + DQ    V+    N   VA+Q+++E    LQ E + 
Sbjct:    62 ERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 121

Query:   130 NRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQ 189
              R  ++    M++  +    LE     L    + A+L  +++S EL+ +RL+EV++   Q
Sbjct:   122 LRGLLR---AMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQ 178

Query:   190 EFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQSTE---GQLNLIETDYSKVLK 245
             EFR+  Y L GY++D  T   Y+L S+YA+ P + L+F++T     ++ L+ET++S  + 
Sbjct:   179 EFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVG 238

Query:   246 PLLDLHLGRHHSIPMLLSALTQELFQRQ 273
              L+++HL R  SIP  LS+LT ELF RQ
Sbjct:   239 ELIEVHLRRQDSIPAFLSSLTLELFSRQ 266

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|B3KR41 MAD1L1 "cDNA FLJ33640 fis, clone BRAMY2023482, highly similar to Mitotic spindle assembly checkpoint protein MAD1" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 2.5e-23, P = 2.5e-23
 Identities = 70/211 (33%), Positives = 122/211 (57%)

Query:    76 DRAKLEVLEKVIEGYRQRME-HIEADQGLVCVIP-GQNSEKVAQQKVQE----LQMEADN 129
             +R++LE  ++++E   +R     + DQ    V+    N   VA+Q+++E    LQ E + 
Sbjct:   419 ERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 478

Query:   130 NRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQ 189
              R  ++    M++  +    LE     L    + A+L  +++S EL+ +RL+EV++   Q
Sbjct:   479 LRGLLR---AMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQ 535

Query:   190 EFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQSTE---GQLNLIETDYSKVLK 245
             EFR+  Y L GY++D  T   Y+L S+YA+ P + L+F++T     ++ L+ET++S  + 
Sbjct:   536 EFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVG 595

Query:   246 PLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
              L+++HL R  SIP  LS+LT ELF RQT++
Sbjct:   596 ELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 626

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|Q9Y6D9 MAD1L1 "Mitotic spindle assembly checkpoint protein MAD1" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 3.4e-23, P = 3.4e-23
 Identities = 70/211 (33%), Positives = 122/211 (57%)

Query:    76 DRAKLEVLEKVIEGYRQRME-HIEADQGLVCVIP-GQNSEKVAQQKVQE----LQMEADN 129
             +R++LE  ++++E   +R     + DQ    V+    N   VA+Q+++E    LQ E + 
Sbjct:   511 ERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECER 570

Query:   130 NRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQ 189
              R  ++    M++  +    LE     L    + A+L  +++S EL+ +RL+EV++   Q
Sbjct:   571 LRGLLR---AMERGGTVPADLEAAAASLPSSKEVAELKKQVESAELKNQRLKEVFQTKIQ 627

Query:   190 EFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQSTE---GQLNLIETDYSKVLK 245
             EFR+  Y L GY++D  T   Y+L S+YA+ P + L+F++T     ++ L+ET++S  + 
Sbjct:   628 EFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLLETEFSHTVG 687

Query:   246 PLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
              L+++HL R  SIP  LS+LT ELF RQT++
Sbjct:   688 ELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 718

GO:0051301 "cell division" evidence=IEA

GO:0000777 "condensed chromosome kinetochore" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007093 "mitotic cell cycle checkpoint" evidence=NAS

GO:0005813 "centrosome" evidence=NAS

GO:0005819 "spindle" evidence=NAS

GO:0000089 "mitotic metaphase" evidence=NAS

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0000776 "kinetochore" evidence=IDA

GO:0005643 "nuclear pore" evidence=IDA

GO:0000093 "mitotic telophase" evidence=NAS

GO:0090235 "regulation of metaphase plate congression" evidence=IDA

GO:0072686 "mitotic spindle" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|A7MB59 MAD1L1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 67/208 (32%), Positives = 119/208 (57%)

Query:    75 SDRAKLEVLEKVIEGYRQRME-HIEADQGLVCVIP-GQNSEKVAQQKVQELQMEADNNRE 132
             ++R++LE  +K +E   +R+    + DQ    V+   QN    A+Q+++E Q +      
Sbjct:   510 AERSRLEEEKKTLEAQLERLTLQGDYDQSKTKVLHLSQNPAGAARQRLREDQQQLQEECA 569

Query:   133 TVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFR 192
              ++++    +    + +    G  L    + A+L  +++S EL+ +RL+EV++   QEFR
Sbjct:   570 RLRELVRALEAGGPVPAHLEAGAGLPSSREVAELKKQVESAELKNQRLKEVFQTKIQEFR 629

Query:   193 ETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQST--EG-QLNLIETDYSKVLKPLL 248
             +  Y L GY+VD  T   Y+L SMYA+   + L+F++    G ++ L+ET +S+ +  L+
Sbjct:   630 KVCYTLTGYQVDITTESQYRLTSMYAEQKADCLIFKAAGPSGTKMQLLETAFSRTVPGLI 689

Query:   249 DLHLGRHHSIPMLLSALTQELFQRQTMS 276
             +LHL +  SIP  LSALT +LF RQT++
Sbjct:   690 ELHLLQQDSIPAFLSALTLDLFSRQTLA 717

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

UNIPROTKB|F1PAV9 MAD1L1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 6.5e-22, P = 6.5e-22
 Identities = 68/207 (32%), Positives = 116/207 (56%)

Query:    76 DRAKLEVLEKVIEGYRQRME-HIEADQGLVCVIP-GQNSEKVAQQKVQELQMEADNNRET 133
             +R++LE  +K +E   +R       DQ    V+    N   VA+Q+++E Q       E 
Sbjct:   511 ERSRLEEDKKTLEMQLERFTLQGNYDQSRTKVLHMSMNPASVAKQRLREDQARLQEECEQ 570

Query:   134 VKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRE 193
             ++++    +    I +       L    + A+L  +++S EL+ +RL+EV++   QEFR+
Sbjct:   571 LRELVRALERGGPIPANLEAAAGLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEFRK 630

Query:   194 TVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQST--EG-QLNLIETDYSKVLKPLLD 249
               Y L GY++D  T   Y+L SMYA+   + L+F++T   G ++ L+ET +S+ ++ L++
Sbjct:   631 VCYALTGYQIDITTENQYRLTSMYAEHKADCLIFKATGTSGTKMQLLETAFSRTIQELIE 690

Query:   250 LHLGRHHSIPMLLSALTQELFQRQTMS 276
             LHL    SIP  LSALT +LF RQT++
Sbjct:   691 LHLLHQDSIPAFLSALTLDLFSRQTVA 717

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

ZFIN|ZDB-GENE-040426-1081 mad1l1 "MAD1 mitotic arrest deficient-like 1" [Danio rerio (taxid:7955)]

 Score = 263 (97.6 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 69/216 (31%), Positives = 117/216 (54%)

Query:    75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETV 134
             ++R +LE    ++E  R    +++ D   V         KV   ++    M      + V
Sbjct:   510 AERQRLEEQNNILE-MRLERHNLQGDYDPV-------KTKVVHLQMNPTSMAKQQRADEV 561

Query:   135 KQM-AGMQKLNSKIKSLELQGKRLRE--------VYKAAKLNNKIKSLELQGKRLREVYK 185
             +Q+    Q+L  +++ +E+ G    +          +   L  +++S EL+ +RL+EV++
Sbjct:   562 EQLRVECQRLRDRLRKIEVAGGMTTDDTTLIIPPSQEILDLRKQMESAELKNQRLKEVFQ 621

Query:   186 AASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQST----EGQLNLIETDY 240
                QEFR   Y+L GY++D T    Y+L S+YA+  +++LLF+ST     G + L+ETD+
Sbjct:   622 KKIQEFRTACYVLTGYQIDITVENQYRLTSVYAEHMEDSLLFKSTGPVGSGSMQLLETDF 681

Query:   241 SKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
             S+ L  L+DLHL    SIP+ LSA+T ELF RQT++
Sbjct:   682 SRTLTGLVDLHLFHQKSIPVFLSAVTIELFSRQTVA 717

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q80YF0 MAD1L1 "Mitotic spindle assembly checkpoint protein MAD1" [Cricetulus griseus (taxid:10029)]

 Score = 247 (92.0 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 67/207 (32%), Positives = 117/207 (56%)

Query:    76 DRAKLEVLEKVIEGYRQRMEHIEAD--QGLVCVIP-GQNSEKVAQQKVQELQMEADNNRE 132
             +R++LE  ++ +E   +R+  ++ D  Q    V+    N   +A+++ QE         E
Sbjct:   511 ERSRLEQEKQALEMQMERLT-LQGDYNQSRTKVLHMSLNPASMARKRQQEDHARLQGECE 569

Query:   133 TVKQMAGMQKLNSKIKS-LELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEF 191
              ++ +    +    I + LE+    L    + A+L  +++S EL+ +RL+EV++   QEF
Sbjct:   570 RLRGLVHALERGGPIPADLEVASS-LPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEF 628

Query:   192 RETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQST--EG-QLNLIETDYSKVLKPL 247
             R+  Y L GY++D  T   Y+L S YA+   + L+F++T   G ++ L+ET++S+ +  L
Sbjct:   629 RKVCYTLTGYQIDVTTENQYRLTSRYAEHQSDCLIFKATGPSGSKMQLLETEFSRSVPEL 688

Query:   248 LDLHLGRHHSIPMLLSALTQELFQRQT 274
             ++LHL +  SIP  LSALT ELF RQT
Sbjct:   689 IELHLLQQDSIPAFLSALTIELFSRQT 715

GO:0000776 "kinetochore" evidence=ISS

GO:0072686 "mitotic spindle" evidence=ISS

GO:0090235 "regulation of metaphase plate congression" evidence=ISS

GO:0005643 "nuclear pore" evidence=ISS

RGD|1596881 Mad1l1 "MAD1 mitotic arrest deficient-like 1 (yeast)" [Rattus norvegicus (taxid:10116)]

 Score = 244 (91.0 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 66/207 (31%), Positives = 117/207 (56%)

Query:    76 DRAKLEVLEKVIEGYRQRMEHIEAD--QGLVCVIP-GQNSEKVAQQKVQELQMEADNNRE 132
             +R++LE  ++ +E   +R+  ++ D  Q    V+    N   +A+Q+ +E         E
Sbjct:   511 ERSRLEQEKQALEMQMERLT-LQGDYNQSRTKVLHMSLNPASMARQRQREDHDRLQEECE 569

Query:   133 TVKQMAGMQKLNSKIKSLELQG-KRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEF 191
              ++ +    +    I + +L+    L    + A+L  +++S EL+ +RL+EV++   QEF
Sbjct:   570 RLRGLVHALERGGPIPA-DLEAASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEF 628

Query:   192 RETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQST--EG-QLNLIETDYSKVLKPL 247
             R+  Y L GY++D  T   Y+L S YA+   + L+F++T   G ++ L+ET++S+ +  L
Sbjct:   629 RKVCYTLTGYQIDVTTESQYRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPEL 688

Query:   248 LDLHLGRHHSIPMLLSALTQELFQRQT 274
             ++LHL +  SIP  LSALT ELF RQT
Sbjct:   689 IELHLLQQDSIPAFLSALTIELFSRQT 715

GO:0000776 "kinetochore" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005643 "nuclear pore" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA;ISO

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090235 "regulation of metaphase plate congression" evidence=ISO

MGI|MGI:1341857 Mad1l1 "MAD1 mitotic arrest deficient 1-like 1" [Mus musculus (taxid:10090)]

 Score = 242 (90.2 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 66/207 (31%), Positives = 117/207 (56%)

Query:    76 DRAKLEVLEKVIEGYRQRMEHIEAD--QGLVCVIP-GQNSEKVAQQKVQELQMEADNNRE 132
             +R++LE  ++V+E   +++  ++ D  Q    V+    N   +A+Q+  E         E
Sbjct:   511 ERSRLEQEKQVLEMQMEKLT-LQGDYNQSRTKVLHMSLNPISMARQRQHEDHDRLQEECE 569

Query:   133 TVKQMAGMQKLNSKIKSLELQG-KRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEF 191
              ++ +    +    I + +L+    L    + A+L  +++S EL+ +RL+EV++   QEF
Sbjct:   570 RLRGLVHALERGGPIPA-DLEAASSLPSSKEVAELRKQVESAELKNQRLKEVFQTKIQEF 628

Query:   192 RETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQST--EG-QLNLIETDYSKVLKPL 247
             R+  Y L GY++D  T   Y+L S YA+   + L+F++T   G ++ L+ET++S+ +  L
Sbjct:   629 RKVCYTLTGYQIDVTTESQYRLTSRYAEHQTDCLIFKATGPSGSKMQLLETEFSRSVPEL 688

Query:   248 LDLHLGRHHSIPMLLSALTQELFQRQT 274
             ++LHL +  SIP  LSALT ELF RQT
Sbjct:   689 IELHLLQQDSIPAFLSALTIELFSRQT 715

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0072686 "mitotic spindle" evidence=ISO

GO:0090235 "regulation of metaphase plate congression" evidence=ISO

FB|FBgn0026326 Mad1 [Drosophila melanogaster (taxid:7227)]

 Score = 236 (88.1 bits), Expect = 8.9e-19, P = 8.9e-19
 Identities = 80/248 (32%), Positives = 125/248 (50%)

Query:    52 TYQMEWRALKGNATFSESAAPPGSDRAK--LEVLEKVIEGYRQRMEHIEADQGLVCVIPG 109
             T + E ++L+     +E A   G D  K  L+ L    +  R+R E +E +    C+   
Sbjct:   487 TLEREIQSLRQQELVNEPAGE-GYDSVKKELDTLRMENDRLRRRKEELEMEMMHRCLRGD 545

Query:   110 QNSE--KV---AQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGK-RLREVYKA 163
              N +  KV   ++    E      N  E  K  A +++L  + K LE   + RL E    
Sbjct:   546 FNMKDFKVVHFSENPAAEAYESTKNMME--KLQAEIERLKRRNKKLEDDNEQRLNETTST 603

Query:   164 A--KLN----NKIKS-LE-LQGK--RLREVYKAASQEFRETVYLLFGYKVDR--TNCMYK 211
                 LN    N++++ LE   GK  ++R+ +KAA +EFR+  Y+L GY++DR   N  Y+
Sbjct:   604 GGMTLNFKEFNQLQAELESANGKMRKMRDCFKAAREEFRDVCYMLLGYRIDRIGANSNYR 663

Query:   212 LASMYADGPDENLLFQSTEGQ-LNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELF 270
             ++SM+A+GPD+ L     E   L L+E+ YS    P +D  L   +  P   SALT ELF
Sbjct:   664 ISSMFAEGPDDYLDISLNESNCLALLESPYSHTFNPPIDQQLAASN-FPAFFSALTLELF 722

Query:   271 QRQTMSMT 278
             Q+ T++MT
Sbjct:   723 QKATVTMT 730

GO:0003674 "molecular_function" evidence=ND

GO:0031577 "spindle checkpoint" evidence=IMP

GO:0072686 "mitotic spindle" evidence=IDA

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IDA

GO:0000776 "kinetochore" evidence=IDA

GO:0007094 "mitotic spindle assembly checkpoint" evidence=IMP

GO:0051315 "attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	284
pfam05557	722	pfam05557, MAD, Mitotic checkpoint protein	3e-22

>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 22/217 (10%)

Query: 77  RAKLEVLEKVIEGYRQRMEHIEADQGLVCVI----------------PGQNSEKVAQQKV 120
           R K+E LE+  +  RQ    +E     +C+                 P   +E++A+Q +
Sbjct: 509 RLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQTI 568

Query: 121 QELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRL 180
           + LQ E +  +E ++ +       S+   LE          + A+L  +++S E + +RL
Sbjct: 569 EALQAECEKLKERLQALEE---GKSQPGDLEKAVGSHISSKEIAQLKKQVESAEKKNQRL 625

Query: 181 REVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGPDENLLFQSTE--GQLNLIE 237
           +EV++    EFR   Y+LFGYK+D   N  Y+L SMYA+  D+ L+F++    G + L+E
Sbjct: 626 KEVFQTKISEFRRACYMLFGYKIDITPNSQYRLTSMYAEHDDDKLIFKAESSNGSMQLLE 685

Query: 238 TDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQT 274
           T  S     L++LHL + +SIP  LSALT ELF RQT
Sbjct: 686 TPSSGTFAKLIELHLLKQNSIPAFLSALTLELFSRQT 722

This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in yeast and higher eukaryotes. In S.cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated. Length = 722

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	100.0
KOG4593|consensus	716		100.0
KOG4593|consensus	716		97.43
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	94.39
PRK09039	343	hypothetical protein; Validated	93.7
KOG0995|consensus	581		92.94
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	92.61
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	92.41
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	92.17
KOG4657|consensus	246		91.89
TIGR03545	555	conserved hypothetical protein TIGR03545. This mod	91.78
PRK10884	206	SH3 domain-containing protein; Provisional	91.45
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	91.1
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	89.8
PRK09039	343	hypothetical protein; Validated	89.26
KOG0971|consensus	1243		88.89
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	88.56
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.14
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	87.88
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	87.77
KOG0977|consensus	546		87.5
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.31
KOG4603|consensus	201		86.93
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	85.61
PRK14127	109	cell division protein GpsB; Provisional	85.42
COG2433	652	Uncharacterized conserved protein [Function unknow	85.39
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	85.39
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	84.74
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.51
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	83.44
PF03962	188	Mnd1: Mnd1 family; InterPro: IPR005647 This family	83.33
PF00038	312	Filament: Intermediate filament protein; InterPro:	83.3
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	82.67
PRK11281	1113	hypothetical protein; Provisional	81.96
PRK11637	428	AmiB activator; Provisional	81.91
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	81.4
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	80.39

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=100.00  E-value=2.6e-52  Score=428.34  Aligned_cols=216  Identities=32%  Similarity=0.505  Sum_probs=168.8

Q ss_pred             hHHHHHHHhhcccccccC-----CCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeee
Q psy9275          52 TYQMEWRALKGNATFSES-----AAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQME  126 (284)
Q Consensus        52 ~~e~e~~~lk~~~~~~e~-----~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~  126 (284)
                      +++.+++.++......+.     ++..+.++.+|..||..++.+++++..++..++     ..+++|+|+|++|+|+  |
T Consensus       479 ~~~~e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~-----~~~L~g~~~~~~trVL--~  551 (722)
T PF05557_consen  479 TLEAELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENERLRQELEELESELE-----KLTLQGEFNPSKTRVL--H  551 (722)
T ss_dssp             ---------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHCCCT--BTTTEEEE--E
T ss_pred             chhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhhhccccCCCCceee--e
Confidence            455555555555444333     134456888999999999999999999888774     5667899999999765  9


Q ss_pred             cccCHHH--HH-HHHHHHHHHHHHHHHHHHHhhhhhH-----------------HHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275         127 ADNNRET--VK-QMAGMQKLNSKIKSLELQGKRLREV-----------------YKAAKLNNKIKSLELQGKRLREVYKA  186 (284)
Q Consensus       127 lr~NP~a--~~-~~~~le~Lk~ENe~L~~~l~~~e~~-----------------~E~~~Lk~qi~~~eKr~~RLKEVF~~  186 (284)
                      |++||.+  .+ +.+++++|++||++|+++++.++.+                 .++.+|+++|++++||++||||||++
T Consensus       552 lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~  631 (722)
T PF05557_consen  552 LRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKA  631 (722)
T ss_dssp             ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999933  33 4459999999999999999777654                 57899999999999999999999999


Q ss_pred             HHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCCCCceEEEecCCe--eeeeCCcchhhhHHHHHHHhhhCCCchhhhH
Q psy9275         187 ASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTEGQ--LNLIETDYSKVLKPLLDLHLGRHHSIPMLLS  263 (284)
Q Consensus       187 Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~G~--mkll~s~f~~~l~~~i~~wl~~~~SIPaFLA  263 (284)
                      ||.+||+|||+||||+|||. ||+|||+|||+++|+|||+|++++|+  |++++++|+++|+++|.+||.+++|||||||
T Consensus       632 ks~eFr~av~~llGyki~~~~~~~~rl~S~ya~~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~i~~~v~~~~siP~FLa  711 (722)
T PF05557_consen  632 KSQEFREAVYSLLGYKIDFMPNGRVRLTSMYAESPDDYLIFDLESGTGSMKLLESEFSPELEDLIEFWVEERNSIPAFLA  711 (722)
T ss_dssp             HHHHHHHHHHHHHSEEEEEETTTEEEEEETT-SSTT--EEEEEE-----EEEE--CCHHCTHHHHHHHTTTS--HHHHHH
T ss_pred             HHHHHHHHHHHHhcceeeecCCCeEEEEecccCCCCCeEEEeecCCCccceeCCCchHHHHHHHHHHHHHcCCChhHHHH
Confidence            99999999999999999999 99999999999999999999999776  9999999999999999999999999999999


Q ss_pred             HhcHHhhhccc
Q psy9275         264 ALTQELFQRQT  274 (284)
Q Consensus       264 ALTLeLfek~T  274 (284)
                      ||||+||+++|
T Consensus       712 alTlel~~~~t  722 (722)
T PF05557_consen  712 ALTLELFEKQT  722 (722)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHhcCC
Confidence            99999999987

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>KOG4593|consensus

Probab=100.00  E-value=1.4e-43  Score=356.83  Aligned_cols=227  Identities=27%  Similarity=0.424  Sum_probs=190.8

Q ss_pred             HHHHHhhhhhhhHHHHHHHhhcccccccCC-----CCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccc
Q psy9275          41 EKELKEKVDHLTYQMEWRALKGNATFSESA-----APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKV  115 (284)
Q Consensus        41 ~~~~~~~~~~~~~e~e~~~lk~~~~~~e~~-----~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~  115 (284)
                      +..++..++  .++++++.|+++.+..+++     .+...+..+|....+.+..++.+.-.+.     +++|+.-++|+|
T Consensus       463 i~~~k~~~e--~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En~rLr-----~~~e~~~l~gd~  535 (716)
T KOG4593|consen  463 ITGQKKRLE--KLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEENDRLR-----AQLERRLLQGDY  535 (716)
T ss_pred             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhhh
Confidence            445555555  8899999999998877765     3333445555555544444444443333     223445559999


Q ss_pred             ccccceeeeeecccCHH--HHHHHH-HHHHHHHHHHHHHHHHhhhhhH------------------HHHHHHHHHHHhHH
Q psy9275         116 AQQKVQELQMEADNNRE--TVKQMA-GMQKLNSKIKSLELQGKRLREV------------------YKAAKLNNKIKSLE  174 (284)
Q Consensus       116 ~~~~tkvlIL~lr~NP~--a~~~~~-~le~Lk~ENe~L~~~l~~~e~~------------------~E~~~Lk~qi~~~e  174 (284)
                      +...++|+  |+++||-  +++..+ +++.|++||++|+.++.+++.+                  .|+++|++++++++
T Consensus       536 ~~~~~rVl--~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~l~~le~~~~~~~d~~i~~~s~~~~~~ev~qlk~ev~s~e  613 (716)
T KOG4593|consen  536 EENITRVL--HMSTNPTSKARQIKKNRLEELQAELERLKERLTALEGDKMQFRDGEIAVHSLLAFSKEVAQLKKEVESAE  613 (716)
T ss_pred             hhhcccee--eecCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccchhhHHhhhhcchHHHHHHHHHHHHHH
Confidence            99999775  9999994  444333 9999999999999999998875                  58999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCCCCceEEEecCCeeeeeCCcchhhhHHHHHHHhh
Q psy9275         175 LQGKRLREVYKAASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLG  253 (284)
Q Consensus       175 Kr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~  253 (284)
                      ||++|||+||+.+|++||+|||+||||+|||+ +++|||+|+||++|+||++|..++|+|++++++|+..|+++|+.||.
T Consensus       614 kr~~rlk~vF~~ki~eFr~ac~sL~Gykid~~~~s~~ritS~ya~~~~~~~~~e~eS~s~~ll~n~~~~~~d~li~~~~~  693 (716)
T KOG4593|consen  614 KRNQRLKEVFASKIQEFRDACYSLLGYKIDFTLESRYRLTSGYAEEPDDCDIFENESGSLQLLENPYSHTFDPLIQVWCF  693 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccceeeeeeccCCCchhhhhcCccchhHhhcCCcccccchHhhhhhh
Confidence            99999999999999999999999999999999 99999999999999999999999999999999999999999999999


Q ss_pred             hCCCchhhhHHhcHHhhhccccc
Q psy9275         254 RHHSIPMLLSALTQELFQRQTMS  276 (284)
Q Consensus       254 ~~~SIPaFLAALTLeLfek~T~~  276 (284)
                      .++|||||||||||+||++.|.+
T Consensus       694 ~~~siPaFlaaLTLELf~k~tv~  716 (716)
T KOG4593|consen  694 ARSSIPAFLAALTLELFQKRTVT  716 (716)
T ss_pred             cccCchHHHHHHHHHHHhhccCC
Confidence            99999999999999999999863

>KOG4593|consensus

Probab=97.43  E-value=6.8e-05  Score=77.80  Aligned_cols=127  Identities=17%  Similarity=0.067  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhh--hH-----------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275         138 AGMQKLNSKIKSLELQGKRLR--EV-----------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL  198 (284)
Q Consensus       138 ~~le~Lk~ENe~L~~~l~~~e--~~-----------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L  198 (284)
                      ..++.|+.||.+|+..+..-.  .+                 .--...+..+..+++-+.|||+.           +..+
T Consensus       510 ke~~~Le~En~rLr~~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~~k~~~e~LqaE~~~lk~~-----------l~~l  578 (716)
T KOG4593|consen  510 KELELLEEENDRLRAQLERRLLQGDYEENITRVLHMSTNPTSKARQIKKNRLEELQAELERLKER-----------LTAL  578 (716)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCchHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHH
Confidence            378999999999996654321  11                 11234455788888888888887           5668


Q ss_pred             hceEEEeeCCeeEEEeeccCCCCCceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhhHHhcHHhhhccccc
Q psy9275         199 FGYKVDRTNCMYKLASMYADGPDENLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS  276 (284)
Q Consensus       199 lGYkIdf~ng~~rL~S~Ya~s~ed~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFLAALTLeLfek~T~~  276 (284)
                      -||+..|.++..-+.|+|+.+ .+...|+...++++.....|...|..-|..|...+.|+|||...+|.+.+.+-|.+
T Consensus       579 e~~~~~~~d~~i~~~s~~~~~-~ev~qlk~ev~s~ekr~~rlk~vF~~ki~eFr~ac~sL~Gykid~~~~s~~ritS~  655 (716)
T KOG4593|consen  579 EGDKMQFRDGEIAVHSLLAFS-KEVAQLKKEVESAEKRNQRLKEVFASKIQEFRDACYSLLGYKIDFTLESRYRLTSG  655 (716)
T ss_pred             hccCCcccchhhHHhhhhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccceeeeee
Confidence            899998889999999999974 35566677778888888888899999999999999999999999999988777665

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=94.39  E-value=0.35  Score=41.90  Aligned_cols=94  Identities=17%  Similarity=0.229  Sum_probs=65.3

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHH
Q psy9275          71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSL  150 (284)
Q Consensus        71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L  150 (284)
                      ++...+...|.+|...+..++..+..+..+|.                       .|..-|-..+-...+..|+.||+.|
T Consensus        72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~-----------------------~L~~~~t~~el~~~i~~l~~e~~~l  128 (169)
T PF07106_consen   72 EELAELDAEIKELREELAELKKEVKSLEAELA-----------------------SLSSEPTNEELREEIEELEEEIEEL  128 (169)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHhcCCCHHHHHHHHHHHHHHHHHH
Confidence            44556788889999888888888888888884                       4566662223223688899999999


Q ss_pred             HHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275         151 ELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAAS  188 (284)
Q Consensus       151 ~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks  188 (284)
                      ..+|..+..+... --..++..+++...++...|.+.-
T Consensus       129 ~~kL~~l~~~~~~-vs~ee~~~~~~~~~~~~k~w~kRK  165 (169)
T PF07106_consen  129 EEKLEKLRSGSKP-VSPEEKEKLEKEYKKWRKEWKKRK  165 (169)
T ss_pred             HHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999988765111 113455666677777777776643

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK09039 hypothetical protein; Validated

Probab=93.70  E-value=1.3  Score=42.94  Aligned_cols=42  Identities=21%  Similarity=0.165  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRL  180 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RL  180 (284)
                      ++..|+.+++.|+.++..++..     ....+.+.+|++++.+.+..
T Consensus       138 ~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        138 QVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777888888888887777643     22344444555555444444

>KOG0995|consensus

Probab=92.94  E-value=1.7  Score=45.16  Aligned_cols=62  Identities=19%  Similarity=0.267  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhH--------HHHHHHHHHHHhHHHHHHHH-HHHHHHHH--HHHHHHHHHhh
Q psy9275         138 AGMQKLNSKIKSLELQGKRLREV--------YKAAKLNNKIKSLELQGKRL-REVYKAAS--QEFRETVYLLF  199 (284)
Q Consensus       138 ~~le~Lk~ENe~L~~~l~~~e~~--------~E~~~Lk~qi~~~eKr~~RL-KEVF~~Ks--~EFReav~~Ll  199 (284)
                      ++++.|+++|.+|+.++....-.        .|..+|+..|...+....+| |+||..+.  +.|-+.+-..|
T Consensus       308 eE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l~~~~~f~~le~~~  380 (581)
T KOG0995|consen  308 EEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKLEIEDFFKELEKKF  380 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            48999999999999998875432        66777788888888888887 46676655  66666665544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=92.61  E-value=1.2  Score=37.51  Aligned_cols=30  Identities=17%  Similarity=0.263  Sum_probs=23.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHhh
Q psy9275          71 APPGSDRAKLEVLEKVIEGYRQRMEHIEAD  100 (284)
Q Consensus        71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~  100 (284)
                      ..+..+...|..+|.+++.++++++.+.+.
T Consensus        16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~   45 (120)
T PF12325_consen   16 QLVERLQSQLRRLEGELASLQEELARLEAE   45 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345568889999999999999888886654

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=92.41  E-value=1.9  Score=41.28  Aligned_cols=74  Identities=14%  Similarity=0.198  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhhceEEEee-CCe
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLREVYKAASQEFR---ETVYLLFGYKVDRT-NCM  209 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR---eav~~LlGYkIdf~-ng~  209 (284)
                      +++..+++.+.|..++..+...     .++.+++.+|.++++....-+.+=..-+...+   ++...++||+|.-. ++.
T Consensus       224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~~gw~~~~~~~~~  303 (325)
T PF08317_consen  224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKLTGWKIVSISGST  303 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCcEEEEEeCCe
Confidence            3444444444444444443332     45667777777777665432222111222222   34677899999887 555


Q ss_pred             eEE
Q psy9275         210 YKL  212 (284)
Q Consensus       210 ~rL  212 (284)
                      +.+
T Consensus       304 l~~  306 (325)
T PF08317_consen  304 LEF  306 (325)
T ss_pred             EEE
Confidence            544

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=92.17  E-value=7  Score=36.62  Aligned_cols=95  Identities=19%  Similarity=0.199  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH---------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh-ceEEEee-C
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV---------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLF-GYKVDRT-N  207 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~---------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~Ll-GYkIdf~-n  207 (284)
                      .++.|+.+...|..++.+.+..         .++.....+......+...|++--......|-+.+..=. |-=|--. +
T Consensus       118 ~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~l~~ell~~yeri~~~~kg~gvvpl~g  197 (239)
T COG1579         118 EIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNKKGVGVVPLEG  197 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHhcCCCceEEeecC
Confidence            4455555555555555555543         345666666777777778888888777777777777666 6656555 1


Q ss_pred             ----C-eeEEEeeccCC--CCCceEEEecCCee
Q psy9275         208 ----C-MYKLASMYADG--PDENLLFQSTEGQL  233 (284)
Q Consensus       208 ----g-~~rL~S~Ya~s--~ed~LvF~~~~G~m  233 (284)
                          | .++|.+.+...  ..|.++|=|..|.+
T Consensus       198 ~~C~GC~m~l~~~~~~~V~~~d~iv~CP~CgRI  230 (239)
T COG1579         198 RVCGGCHMKLPSQTLSKVRKKDEIVFCPYCGRI  230 (239)
T ss_pred             CcccCCeeeecHHHHHHHhcCCCCccCCccchH
Confidence                1 55666555421  14556666665543

>KOG4657|consensus

Probab=91.89  E-value=11  Score=35.31  Aligned_cols=122  Identities=10%  Similarity=0.164  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHH-----HHHHHHHHHHHHHHHHH---HHHHHHhhceEEEee-CC-
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLE-----LQGKRLREVYKAASQEF---RETVYLLFGYKVDRT-NC-  208 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~e-----Kr~~RLKEVF~~Ks~EF---Reav~~LlGYkIdf~-ng-  208 (284)
                      ++..+|+|.+.|+..++.++.  |+...+.-|.+..     +.-.+.|-  .+++...   ..-....||+.|.-. +. 
T Consensus        94 eik~~q~elEvl~~n~Q~lke--E~dd~keiIs~kr~~~~Ka~e~~~kR--kQdsa~~~e~a~wy~dyLGleie~~hgev  169 (246)
T KOG4657|consen   94 EIKATQSELEVLRRNLQLLKE--EKDDSKEIISQKRQALSKAKENAGKR--KQDSADIHEAASWYNDYLGLEIEAGHGEV  169 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHH--HhhhhccHHHHHHHHHhcCceeeeccCce
Confidence            566666666666666555542  2233333222222     12222222  2222222   223445699999998 43 


Q ss_pred             -eeEEEeeccCCCCCceEEEec-CC--eeeeeC-CcchhhhHHHHHHHhhhCCCchhhhHHh
Q psy9275         209 -MYKLASMYADGPDENLLFQST-EG--QLNLIE-TDYSKVLKPLLDLHLGRHHSIPMLLSAL  265 (284)
Q Consensus       209 -~~rL~S~Ya~s~ed~LvF~~~-~G--~mkll~-s~f~~~l~~~i~~wl~~~~SIPaFLAAL  265 (284)
                       +|..|-+=+.+|..+|.|.+. +.  --+++. .|-..-+.+.+.. +...+++-.||..+
T Consensus       170 ikfiFTnIdpkdp~~~FsF~vhL~e~~Dy~Vvd~~P~L~gl~~a~s~-vr~tnnFs~FL~n~  230 (246)
T KOG4657|consen  170 IKFIFTNIDPKDPTREFSFTVHLGEDIDYQVVDHSPQLQGLTSAISA-VRPTNNFSSFLENK  230 (246)
T ss_pred             EEEEEeccCCCCCccceeeEEeeccccCccccCcCCCcccHHHHHHH-hhccccHHHHHHHH
Confidence             888899999999999999987 22  234443 2222334444443 56778888888764

>TIGR03545 conserved hypothetical protein TIGR03545

Probab=91.78  E-value=0.77  Score=47.53  Aligned_cols=101  Identities=20%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecc--cCH-HHHHHHHHHHHHHHHHHHHHHH
Q psy9275          77 RAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEAD--NNR-ETVKQMAGMQKLNSKIKSLELQ  153 (284)
Q Consensus        77 ~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr--~NP-~a~~~~~~le~Lk~ENe~L~~~  153 (284)
                      .+.+++++..+...++......++|.        .+.++..-+.+|-.|.-.  .|| +..+..++++.|+.|.+..+++
T Consensus       163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp--------~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~  234 (555)
T TIGR03545       163 VETAEEIEKSLKAMQQKWKKRKKDLP--------NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQK  234 (555)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788888888888888877766662        134444444443333334  689 4455556899999999999999


Q ss_pred             HhhhhhH--HHHHHHHHHHHhHHH----HHHHHHHHHH
Q psy9275         154 GKRLREV--YKAAKLNNKIKSLEL----QGKRLREVYK  185 (284)
Q Consensus       154 l~~~e~~--~E~~~Lk~qi~~~eK----r~~RLKEVF~  185 (284)
                      ++.....  .+..+++.+++.+++    -..||++.|.
T Consensus       235 i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~  272 (555)
T TIGR03545       235 IKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENKYA  272 (555)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence            8887654  455666666655543    4668885544

This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.45  E-value=0.73  Score=41.98  Aligned_cols=77  Identities=18%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHH-HHHHHHHHHHHHHHH
Q psy9275          75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMA-GMQKLNSKIKSLELQ  153 (284)
Q Consensus        75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~-~le~Lk~ENe~L~~~  153 (284)
                      ..+.++++||..++..+++++.+..+..              +.+..     +   -.-.++.. .+..|++||++|.++
T Consensus        90 ~~~~rlp~le~el~~l~~~l~~~~~~~~--------------~~~~~-----l---~~~~~~~~~~~~~L~~~n~~L~~~  147 (206)
T PRK10884         90 SLRTRVPDLENQVKTLTDKLNNIDNTWN--------------QRTAE-----M---QQKVAQSDSVINGLKEENQKLKNQ  147 (206)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhHHH--------------HHHHH-----H---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999999988888665542              11000     0   00011122 566688888888766


Q ss_pred             HhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy9275         154 GKRLREVYKAAKLNNKIKSLELQGKRLRE  182 (284)
Q Consensus       154 l~~~e~~~E~~~Lk~qi~~~eKr~~RLKE  182 (284)
                      +.         .++.++..++..+++++.
T Consensus       148 l~---------~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        148 LI---------VAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HH---------HHHHHHHHHHHHHHHHHH
Confidence            54         455666666666666653

>TIGR00606 rad50 rad50

Probab=91.10  E-value=2.2  Score=48.12  Aligned_cols=63  Identities=11%  Similarity=0.059  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhce
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGY  201 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGY  201 (284)
                      .++.|..+++.+...+......            .+..+++.+....+.+.+.-..-|+.....+...+..+-+|
T Consensus       889 ~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y  963 (1311)
T TIGR00606       889 QLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENK  963 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6777777777777766665432            12222333333333333333344444445555555555444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=89.80  E-value=16  Score=33.55  Aligned_cols=62  Identities=16%  Similarity=0.370  Sum_probs=41.6

Q ss_pred             hceEEEee------CCeeE--------EEeeccCCCCC--ceEEEecCCeeeeeCCcchhhhHHHHHHHhhhCCCchhhh
Q psy9275         199 FGYKVDRT------NCMYK--------LASMYADGPDE--NLLFQSTEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLL  262 (284)
Q Consensus       199 lGYkIdf~------ng~~r--------L~S~Ya~s~ed--~LvF~~~~G~mkll~s~f~~~l~~~i~~wl~~~~SIPaFL  262 (284)
                      +|++|+..      +|.-+        -.+.|+.++|.  +-+|++..|.-..++.+|...+...+...  ++...|.|+
T Consensus       164 yg~~i~~~~~~i~~dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~~~~~~W~~l~~~~~~~i~~ai~ia--~kq~~~~l~  241 (251)
T PF11932_consen  164 YGRTIEVYQGTITLDGEERQVDFLRLGRVALYYQTLDGSQAGVWDPATGQWQWLPDSYRREIRKAIRIA--RKQRAPELL  241 (251)
T ss_pred             hCCceeEEEEEEeECCeEEEEEEEeecchhheeECCCccceeeecCCCCCCeECCHHHHHHHHHHHHHH--hCCCCcHHh
Confidence            69888887      44221        13556666653  46677777777778778888888888754  566666664

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PRK09039 hypothetical protein; Validated

Probab=89.26  E-value=4.4  Score=39.40  Aligned_cols=50  Identities=14%  Similarity=0.078  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHhhceEEEeeCCeeEE
Q psy9275         161 YKAAKLNNKIKSLEL-QGKRLREVYKAASQEFRETVYLLFGYKVDRTNCMYKL  212 (284)
Q Consensus       161 ~E~~~Lk~qi~~~eK-r~~RLKEVF~~Ks~EFReav~~LlGYkIdf~ng~~rL  212 (284)
                      ..+..|+..|..+-. +.+.|..+-.+-....|++...--|.+|+  +++|.+
T Consensus       172 ~~i~~L~~~L~~a~~~~~~~l~~~~~~~~~~l~~~~~~~~~iri~--g~~~~~  222 (343)
T PRK09039        172 AKIADLGRRLNVALAQRVQELNRYRSEFFGRLREILGDREGIRIV--GDRFVF  222 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCcEEE--CCEEEe
Confidence            446666666554432 23333333222222235555444566665  555544

>KOG0971|consensus

Probab=88.89  E-value=9.9  Score=41.98  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q psy9275          76 DRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQ  110 (284)
Q Consensus        76 l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~  110 (284)
                      ..+|.+.|+-.+...++++.+++.||+....|...
T Consensus       323 AEERaesLQ~eve~lkEr~deletdlEILKaEmee  357 (1243)
T KOG0971|consen  323 AEERAESLQQEVEALKERVDELETDLEILKAEMEE  357 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777777777778888888887755555444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=88.56  E-value=2.6  Score=36.47  Aligned_cols=29  Identities=24%  Similarity=0.229  Sum_probs=21.0

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275          74 GSDRAKLEVLEKVIEGYRQRMEHIEADQG  102 (284)
Q Consensus        74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~  102 (284)
                      +.+..+|..||+.|+...+....+..+.+
T Consensus        20 dsle~~v~~LEreLe~~q~~~e~~~~daE   48 (140)
T PF10473_consen   20 DSLEDHVESLERELEMSQENKECLILDAE   48 (140)
T ss_pred             hhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            46777888888887777777776666654

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.14  E-value=5.3  Score=35.45  Aligned_cols=141  Identities=15%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             HHHHHhhhhhh-hHHHHHHHhhccccccc------CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Q psy9275          41 EKELKEKVDHL-TYQMEWRALKGNATFSE------SAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSE  113 (284)
Q Consensus        41 ~~~~~~~~~~~-~~e~e~~~lk~~~~~~e------~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g  113 (284)
                      +..|-+..++. .+.-+...|.....+..      +++........+..++..+...|.++..+...-+       .+..
T Consensus        23 i~ay~~L~d~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~ELael~r~~~-------el~~   95 (194)
T PF08614_consen   23 IDAYNRLADRTSLLKAENEQLQPEAESLPSSSSSSPSESGSVSSAQISSLEQKLAKLQEELAELYRSKG-------ELAQ   95 (194)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------cccc
Confidence            44444444544 55555555555422211      1122334556777777777777766666544432       1111


Q ss_pred             ccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH------------HHHHHHHHHHHhHHHHHHHHH
Q psy9275         114 KVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREV------------YKAAKLNNKIKSLELQGKRLR  181 (284)
Q Consensus       114 ~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~------------~E~~~Lk~qi~~~eKr~~RLK  181 (284)
                      .+......+.  .++.  ........|..|+.++..|..++..++..            .|+..|+-+...++.+..+|+
T Consensus        96 ~L~~~~~~l~--~l~~--~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~  171 (194)
T PF08614_consen   96 QLVELNDELQ--ELEK--ELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLE  171 (194)
T ss_dssp             ----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccc--hhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1111111111  0000  00011124555555555555555444432            667778888888888888888


Q ss_pred             HHHHHHHHHHH
Q psy9275         182 EVYKAASQEFR  192 (284)
Q Consensus       182 EVF~~Ks~EFR  192 (284)
                      +--..-+...-
T Consensus       172 ~En~~Lv~Rwm  182 (194)
T PF08614_consen  172 EENRELVERWM  182 (194)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77666555443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>smart00787 Spc7 Spc7 kinetochore protein

Probab=87.88  E-value=21  Score=34.47  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhhceEEEee
Q psy9275         161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFR---ETVYLLFGYKVDRT  206 (284)
Q Consensus       161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR---eav~~LlGYkIdf~  206 (284)
                      .++++++.+|..+++....-+..=..-+...+   ++.-.++||+|.-.
T Consensus       246 ~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~l~g~~~~~~  294 (312)
T smart00787      246 NKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQSLTGWKITKL  294 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCeeEec
Confidence            55777788888887755432222222222222   34677899999877

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=87.77  E-value=13  Score=35.71  Aligned_cols=58  Identities=14%  Similarity=-0.028  Sum_probs=34.4

Q ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy9275         129 NNRETVKQMAGMQKLNSKIKSLELQGKRLRE------VYKAAKLNNKIKSLELQGKRLREVYKA  186 (284)
Q Consensus       129 ~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~------~~E~~~Lk~qi~~~eKr~~RLKEVF~~  186 (284)
                      +||..+.-..+++.|++.......++.....      ..+..+|+.+.+.+++..+-+-.-+.+
T Consensus       240 ~~P~v~~l~~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~  303 (362)
T TIGR01010       240 QNPQVPSLQARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQ  303 (362)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3886555444577777777776666654321      156667777777766665554444443

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>KOG0977|consensus

Probab=87.50  E-value=9.4  Score=39.75  Aligned_cols=21  Identities=19%  Similarity=0.292  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhh
Q psy9275         139 GMQKLNSKIKSLELQGKRLRE  159 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~  159 (284)
                      ++..|++||.+|...|.....
T Consensus       170 e~~~Lk~en~rl~~~l~~~r~  190 (546)
T KOG0977|consen  170 ELKRLKAENSRLREELARARK  190 (546)
T ss_pred             HHHHHHHHhhhhHHHHHHHHH
Confidence            888999999999888777654

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.31  E-value=3.1  Score=38.87  Aligned_cols=56  Identities=21%  Similarity=0.265  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY  196 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~  196 (284)
                      ....+..++..|+..+....  ....+|+.+|.++...+..++.++.+.+.+.+.-+.
T Consensus        97 ~~~~le~el~~lrk~ld~~~--~~r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~~~  152 (312)
T PF00038_consen   97 ERKDLEEELESLRKDLDEET--LARVDLENQIQSLKEELEFLKQNHEEEIEELREQIQ  152 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT--
T ss_pred             HHHHHHHHHhhhhhhhhhhh--hhHhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence            34445555555554433211  345678889999999999999999998888776444

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG4603|consensus

Probab=86.93  E-value=7.7  Score=35.08  Aligned_cols=98  Identities=14%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHHHHHHHHHHHHHHHHHH
Q psy9275          71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGMQKLNSKIKSL  150 (284)
Q Consensus        71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~~~~~~le~Lk~ENe~L  150 (284)
                      ++.+.|..+|..|+.-++.+++..+-.++++-                       .|.+|--...=.+.+..|++|+..-
T Consensus        79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik-----------------------~L~s~Lt~eemQe~i~~L~kev~~~  135 (201)
T KOG4603|consen   79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIK-----------------------ELSSALTTEEMQEEIQELKKEVAGY  135 (201)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHhcChHHHHHHHHHHHHHHHHH
Confidence            55666888888888888888887777777762                       2333331111112677899999999


Q ss_pred             HHHHhhhhhH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy9275         151 ELQGKRLREV------YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLL  198 (284)
Q Consensus       151 ~~~l~~~e~~------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~L  198 (284)
                      +++|.+...+      .++.+....-+..       ...|.+.-.=||+.+-.+
T Consensus       136 ~erl~~~k~g~~~vtpedk~~v~~~y~~~-------~~~wrk~krmf~ei~d~~  182 (201)
T KOG4603|consen  136 RERLKNIKAGTNHVTPEDKEQVYREYQKY-------CKEWRKRKRMFREIIDKL  182 (201)
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            9999888876      3444444444444       444444444455555444

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=85.61  E-value=18  Score=38.32  Aligned_cols=52  Identities=10%  Similarity=0.068  Sum_probs=31.4

Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHH
Q psy9275         128 DNNRETVKQMAGMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKR  179 (284)
Q Consensus       128 r~NP~a~~~~~~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~R  179 (284)
                      .+||..+.-..++..|+++.+++..++..+... .++.+|+.+.+..+.-...
T Consensus       336 ~~hP~v~~l~~~~~~L~~~~~~l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~  388 (726)
T PRK09841        336 KDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQ  388 (726)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            457855442224677888888888777766543 5566666665555544433

>PRK14127 cell division protein GpsB; Provisional

Probab=85.42  E-value=2.3  Score=35.32  Aligned_cols=58  Identities=12%  Similarity=0.304  Sum_probs=34.1

Q ss_pred             cCH----HHHHHHH-HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--------------------hHHHHHHHH-HH
Q psy9275         129 NNR----ETVKQMA-GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIK--------------------SLELQGKRL-RE  182 (284)
Q Consensus       129 ~NP----~a~~~~~-~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~--------------------~~eKr~~RL-KE  182 (284)
                      -||    ++.++.. +.+.|..||.+|..++..++  .++.+++.++.                    ..=||+.|| |+
T Consensus        23 Yd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~--~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiLKRls~LEk~  100 (109)
T PRK14127         23 YDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLK--AQVDELTKQVSVGASSSSVATTQPSSSATNYDILKRLSNLEKH  100 (109)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhccccccccccccCCCCCcchHHHHHHHHHHHHH
Confidence            488    3344443 77777777777777776666  33334443332                    234666666 67


Q ss_pred             HHHHHH
Q psy9275         183 VYKAAS  188 (284)
Q Consensus       183 VF~~Ks  188 (284)
                      ||++++
T Consensus       101 VFg~~~  106 (109)
T PRK14127        101 VFGSQL  106 (109)
T ss_pred             Hhcccc
Confidence            777654

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=85.39  E-value=7.4  Score=41.03  Aligned_cols=28  Identities=11%  Similarity=0.243  Sum_probs=17.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy9275          75 SDRAKLEVLEKVIEGYRQRMEHIEADQG  102 (284)
Q Consensus        75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~  102 (284)
                      ...+++..+++.+..++.+++.|+..++
T Consensus       419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~e  446 (652)
T COG2433         419 VYEKRIKKLEETVERLEEENSELKRELE  446 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556666666666666666666665554

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=85.39  E-value=14  Score=34.68  Aligned_cols=104  Identities=14%  Similarity=0.169  Sum_probs=63.6

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc--c--------------------ccccccccceeeeeecccCH
Q psy9275          74 GSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQ--N--------------------SEKVAQQKVQELQMEADNNR  131 (284)
Q Consensus        74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~--~--------------------~g~~~~~~tkvlIL~lr~NP  131 (284)
                      +.+..++.+|+..+++.++.++.+|.||...+.+...  .                    .|...|..+-+   .-..++
T Consensus         2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~---~~~~~~   78 (248)
T PF08172_consen    2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSII---GGGGDS   78 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCC---CCCCcc
Confidence            3577888999999999999999999999643222000  0                    01122221111   001222


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q psy9275         132 ETVK-QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLRE  182 (284)
Q Consensus       132 ~a~~-~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKE  182 (284)
                      .... -.++-|+.+.-|.+|.+.++...  .++..|+.+|+++.+-|..|=|
T Consensus        79 siLpIVtsQRDRFR~Rn~ELE~elr~~~--~~~~~L~~Ev~~L~~DN~kLYE  128 (248)
T PF08172_consen   79 SILPIVTSQRDRFRQRNAELEEELRKQQ--QTISSLRREVESLRADNVKLYE  128 (248)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence            1111 11245677777777777776655  6788899999999888877655

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=84.74  E-value=23  Score=36.96  Aligned_cols=28  Identities=29%  Similarity=0.379  Sum_probs=19.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275          74 GSDRAKLEVLEKVIEGYRQRMEHIEADQ  101 (284)
Q Consensus        74 ~~l~~ki~eLE~~l~~~R~~~~~~~~~l  101 (284)
                      ..+..+|..|+..|...+.+...+....
T Consensus       167 ~~l~~~v~~l~~eL~~~~ee~e~L~~~~  194 (546)
T PF07888_consen  167 EQLREEVERLEAELEQEEEEMEQLKQQQ  194 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3577777888877777777777666544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.51  E-value=4.1  Score=38.27  Aligned_cols=48  Identities=21%  Similarity=0.349  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAAS  188 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks  188 (284)
                      .++.+++|++.|+..+..++  .++.+++..++++++.+.||-|+|...-
T Consensus       143 kl~E~~~EkeeL~~eleele--~e~ee~~erlk~le~E~s~LeE~~~~l~  190 (290)
T COG4026         143 KLEELQKEKEELLKELEELE--AEYEEVQERLKRLEVENSRLEEMLKKLP  190 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence            68899999999999988887  7888999999999999999999988744

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=83.44  E-value=16  Score=35.06  Aligned_cols=23  Identities=30%  Similarity=0.307  Sum_probs=9.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275         161 YKAAKLNNKIKSLELQGKRLREV  183 (284)
Q Consensus       161 ~E~~~Lk~qi~~~eKr~~RLKEV  183 (284)
                      .++..++.+|+..+.+.+.+.+-
T Consensus       237 ~el~~l~~~i~~~~~~k~~l~~e  259 (325)
T PF08317_consen  237 EELEELEEKIEELEEQKQELLAE  259 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444333

>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast)

Probab=83.33  E-value=33  Score=30.66  Aligned_cols=89  Identities=22%  Similarity=0.295  Sum_probs=57.5

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCHHHH-HHHHHHHHHHHHHHH
Q psy9275          71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNRETV-KQMAGMQKLNSKIKS  149 (284)
Q Consensus        71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP~a~-~~~~~le~Lk~ENe~  149 (284)
                      .....+..++.+|.+.++..+..++.+...++..  .    .|              |.+..-+ ..+++++.|+.+++.
T Consensus        62 ~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~--~----~~--------------r~~~~eR~~~l~~l~~l~~~~~~  121 (188)
T PF03962_consen   62 QAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEA--K----KG--------------REESEEREELLEELEELKKELKE  121 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----hc--------------ccccHHHHHHHHHHHHHHHHHHH
Confidence            3444688889999999999999999888887510  0    01              2222222 344689999999999


Q ss_pred             HHHHHhhhhhH--HHHHHHHHHHHhHHHHHHH
Q psy9275         150 LELQGKRLREV--YKAAKLNNKIKSLELQGKR  179 (284)
Q Consensus       150 L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~R  179 (284)
                      |...+......  ..+..++.++..+.....|
T Consensus       122 l~~el~~~~~~Dp~~i~~~~~~~~~~~~~anr  153 (188)
T PF03962_consen  122 LKKELEKYSENDPEKIEKLKEEIKIAKEAANR  153 (188)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            99888854432  4455555555544444433

The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=83.30  E-value=27  Score=32.52  Aligned_cols=58  Identities=26%  Similarity=0.282  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVY  196 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~  196 (284)
                      +++.|+..|..|..++..++..  .+....+..|..++..+..++.--.....+|.+-+.
T Consensus       231 el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~  290 (312)
T PF00038_consen  231 ELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLD  290 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence            4555555555555555555443  456666777777777777777777777777766443

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=82.67  E-value=21  Score=34.76  Aligned_cols=112  Identities=14%  Similarity=0.134  Sum_probs=71.3

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhccccccccccc-------ccccccccceeeeeecccCH--------HHHHHHH-
Q psy9275          75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQN-------SEKVAQQKVQELQMEADNNR--------ETVKQMA-  138 (284)
Q Consensus        75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~-------~g~~~~~~tkvlIL~lr~NP--------~a~~~~~-  138 (284)
                      .|..+++.||..+...++.+.++..++. +.-+-++.       ...-....+.     ++.|+        .....+. 
T Consensus        94 ~L~~~~~~le~~L~~~~e~v~qLrHeL~-~kdeLL~~ys~~~ee~~~~~~~~~~-----~~~~~~~~~~~~~~~le~Lq~  167 (306)
T PF04849_consen   94 DLSERNEALEEQLGAALEQVEQLRHELS-MKDELLQIYSNDDEESEPESSESTP-----LRRNESSLSSQKCIQLEALQE  167 (306)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcHhhhcccccCCCcc-----ccccccccccccchhHHHHHH
Confidence            6789999999999999999999998886 32222111       1111111111     12222        1112222 


Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH------HH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV------YK---AAKLNNKIKSLELQGKRLREVYKAASQEFR  192 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~------~E---~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR  192 (284)
                      .+..|..||..|+.....+...      +|   +.+--+++..++..+..|-+.-..|..++.
T Consensus       168 Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~  230 (306)
T PF04849_consen  168 KLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENR  230 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHH
Confidence            5888999999999877766543      12   334446778888888888888888887765

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>PRK11281 hypothetical protein; Provisional

Probab=81.96  E-value=16  Score=41.06  Aligned_cols=136  Identities=13%  Similarity=0.072  Sum_probs=75.7

Q ss_pred             hHHHHHHHhhccccccc----CCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeee--
Q psy9275          52 TYQMEWRALKGNATFSE----SAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQM--  125 (284)
Q Consensus        52 ~~e~e~~~lk~~~~~~e----~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL--  125 (284)
                      ....++..+|....+..    .+.+...++.++.+++..+++.+..++.....+...+-.+.+.+.......++.--+  
T Consensus        98 ~a~~~Le~Lk~~~~~~~~~~~~~~Sl~qLEq~L~q~~~~Lq~~Q~~La~~NsqLi~~qT~PERAQ~~lsea~~RlqeI~~  177 (1113)
T PRK11281         98 QAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRN  177 (1113)
T ss_pred             HHHHHHHHhhccccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHH
Confidence            34445555665432221    112334588888888888888888888877776543333333332222111110000  


Q ss_pred             eccc-----CH--HH-HHHHH-HHHHHHHHHHHHHHHHhhhhhHHH-----HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275         126 EADN-----NR--ET-VKQMA-GMQKLNSKIKSLELQGKRLREVYK-----AAKLNNKIKSLELQGKRLREVYKAA  187 (284)
Q Consensus       126 ~lr~-----NP--~a-~~~~~-~le~Lk~ENe~L~~~l~~~e~~~E-----~~~Lk~qi~~~eKr~~RLKEVF~~K  187 (284)
                      .+..     .|  ++ +..+. ++.+|+.+|+-++..+.......+     .+.+..++..++...+.|.+.-+.|
T Consensus       178 ~L~~~~~~~~~l~~~~~~~l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~k  253 (1113)
T PRK11281        178 LLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLEHQLQLLQEAINSK  253 (1113)
T ss_pred             HHhCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1112     12  22 23443 788888888888888776655433     3344557777788888888777764

>PRK11637 AmiB activator; Provisional

Probab=81.91  E-value=28  Score=34.36  Aligned_cols=49  Identities=18%  Similarity=0.215  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy9275         140 MQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE  190 (284)
Q Consensus       140 le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E  190 (284)
                      +..+..+...+...+...+  .++..++.+|..++.+...+++.+...+..
T Consensus        84 i~~~~~~i~~~~~~i~~~~--~ei~~l~~eI~~~q~~l~~~~~~l~~rlra  132 (428)
T PRK11637         84 ISQASRKLRETQNTLNQLN--KQIDELNASIAKLEQQQAAQERLLAAQLDA  132 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444333  566777777777777777777777665444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=81.40  E-value=9.8  Score=40.10  Aligned_cols=53  Identities=23%  Similarity=0.204  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH-------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV-------------------YKAAKLNNKIKSLELQGKRLREVYKAASQEF  191 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~-------------------~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EF  191 (284)
                      ++.+.-..|..|+.+|..++.+                   +-..+|.+++..++-+...+++.+..|..+.
T Consensus       154 t~SRAlsQN~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~  225 (617)
T PF15070_consen  154 TASRALSQNRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEA  225 (617)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4444555666777777766664                   1134666677777777777888877776644

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=80.39  E-value=40  Score=31.65  Aligned_cols=53  Identities=25%  Similarity=0.325  Sum_probs=32.4

Q ss_pred             hhhhhHHHHHHHHhh-hhhh-hHHHHHHHhhcccccccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275          33 RERDELLREKELKEK-VDHL-TYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQ  101 (284)
Q Consensus        33 ~~~~~~~~~~~~~~~-~~~~-~~e~e~~~lk~~~~~~e~~~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l  101 (284)
                      ..++++-.++..++. |++. .+++|+..+                ...|..+|..|+..|.+++..+..+
T Consensus        28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~l----------------e~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          28 EIRKALKKAKAELEALNKALEALEIELEDL----------------ENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444443 3333 666665444                4555788888888888888777666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
4dzo_A	123	Structure Of Human Mad1 C-Terminal Domain Reveals I		4e-21

>pdb|4DZO|A Chain A, Structure Of Human Mad1 C-Terminal Domain Reveals Its Involvement In Kinetochore Targeting Length = 123

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 80/119 (67%), Gaps = 4/119 (3%)
Query: 162 KAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGP 220
           + A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY++D  T   Y+L S+YA+ P
Sbjct: 5   EVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHP 64
Query: 221 DENLLFQSTE---GQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
            + L+F++T     +  L+ET++S  +  L+++HL R  SIP  LS+LT ELF RQT++
Sbjct: 65  GDCLIFKATSPSGSKXQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 123
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
4dzo_A	123	Mitotic spindle assembly checkpoint protein MAD1;	2e-30
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-04

>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens} Length = 123

 Score =  109 bits (275), Expect = 2e-30
 Identities = 48/119 (40%), Positives = 80/119 (67%), Gaps = 4/119 (3%)

Query: 162 KAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVD-RTNCMYKLASMYADGP 220
           + A+L  +++S EL+ +RL+EV++   QEFR+  Y L GY++D  T   Y+L S+YA+ P
Sbjct: 5   EVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHP 64

Query: 221 DENLLFQ---STEGQLNLIETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS 276
            + L+F+    +  ++ L+ET++S  +  L+++HL R  SIP  LS+LT ELF RQT++
Sbjct: 65  GDCLIFKATSPSGSKMQLLETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 1e-08
 Identities = 50/371 (13%), Positives = 113/371 (30%), Gaps = 119/371 (32%)

Query: 4   RALKALK-------------GKSTLKVLVIL---VELG------YLSSNRERERDELLR- 40
           +AL  L+             GK+ + + V L   V+        +L+       + +L  
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 41  --------EKELKEKVDH---LTYQMEWRALKGNATFSESAAPPGSDRAKLEVLEKVIEG 89
                   +     + DH   +  ++     +                  L VL  V   
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----NC-LLVLLNV--- 253

Query: 90  YRQRMEHIEA-DQG---LVCVIPGQNSEKVAQQKVQELQMEADNNRETVKQMAGM--QKL 143
             Q  +   A +     L+     Q ++ ++      + ++  +   T  ++  +  + L
Sbjct: 254 --QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311

Query: 144 NSKIKSLELQ------------GKRLREV---------YKAAKLNNKIK-SLE-LQGKRL 180
           + + + L  +             + +R+              KL   I+ SL  L+    
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY 371

Query: 181 REVYKAASQEFRETVY-------LLFGYKVDRT--NCMYKLA--SMYADGPDENL----- 224
           R+++   S  F  + +       L++   +       + KL   S+    P E+      
Sbjct: 372 RKMFDRLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 225 LFQSTEGQLN--------LIET-------DYSKVLKPLLD----LHLGRHHSIPMLLSAL 265
           ++   + +L         +++        D   ++ P LD     H+G H      L  +
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH------LKNI 484

Query: 266 TQ----ELFQR 272
                  LF+ 
Sbjct: 485 EHPERMTLFRM 495

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 27/197 (13%), Positives = 68/197 (34%), Gaps = 34/197 (17%)

Query: 2    EWRALKALKGKSTLKVLVILVELGYLSSNRERERDELLREKELKEKVDHLTYQMEWRALK 61
              R   A          ++ ++  Y     +RE  +L  E    E+   L   +E     
Sbjct: 873  HVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLE----- 927

Query: 62   GNATFSESAAPPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQ 121
                             K+  L++ I+   +  + +             N E     + +
Sbjct: 928  ----------------NKIMQLQRKIDEQNKEYKSLLEKM--------NNLEITYSTETE 963

Query: 122  ELQMEADNNRETVKQMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLR 181
            +L+ + +  R + ++    +   +++ SL+ +  +LR+  +  +   + K++E    + +
Sbjct: 964  KLRSDVERLRMSEEE---AKNATNRVLSLQEEIAKLRK--ELHQTQTEKKTIEEWADKYK 1018

Query: 182  EVYKAASQEFRETVYLL 198
               +    E +E   LL
Sbjct: 1019 HETEQLVSELKEQNTLL 1035

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
4dzo_A	123	Mitotic spindle assembly checkpoint protein MAD1;	100.0
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	99.51
3i00_A	120	HIP-I, huntingtin-interacting protein 1; transcrip	91.75
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	91.28
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	88.9
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	87.32
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	86.97
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	85.8
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	85.23
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.7
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.69
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	84.27
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	83.7
1wlq_A	83	Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2z	82.74
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	82.67
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	82.14
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.37

>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}

Probab=100.00  E-value=1.1e-44  Score=300.83  Aligned_cols=116  Identities=43%  Similarity=0.788  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhceEEEee-CCeeEEEeeccCCCCCceEEEecC--Ce-eeee
Q psy9275         161 YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFGYKVDRT-NCMYKLASMYADGPDENLLFQSTE--GQ-LNLI  236 (284)
Q Consensus       161 ~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng~~rL~S~Ya~s~ed~LvF~~~~--G~-mkll  236 (284)
                      +|+++|++||++++||++||||||++||+|||+|||+||||||||. ||+|||+||||++++|||+|++++  |+ |+++
T Consensus         4 ~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFReav~~LlGykId~~~~~~~rl~S~Ya~~~~d~L~F~~~~~~g~~~~ll   83 (123)
T 4dzo_A            4 KEVAELKKQVESAELKNQRLKEVFQTKIQEFRKACYTLTGYQIDITTENQYRLTSLYAEHPGDCLIFKATSPSGSKMQLL   83 (123)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTTEEEEEETTCSSTTCCEEEEECC--CCCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCeEEEEccCCeEEEEEeecCCCCCeEEEEecCCCCceeeec
Confidence            6899999999999999999999999999999999999999999999 999999999999999999999873  55 9999


Q ss_pred             CCcchhhhHHHHHHHhhhCCCchhhhHHhcHHhhhccccc
Q psy9275         237 ETDYSKVLKPLLDLHLGRHHSIPMLLSALTQELFQRQTMS  276 (284)
Q Consensus       237 ~s~f~~~l~~~i~~wl~~~~SIPaFLAALTLeLfek~T~~  276 (284)
                      +++|+++|+++|++||++++|||||||||||+||+++|++
T Consensus        84 ~t~f~~~~~~~i~~~l~~~~siP~FLaalTLelfe~~T~~  123 (123)
T 4dzo_A           84 ETEFSHTVGELIEVHLRRQDSIPAFLSSLTLELFSRQTVA  123 (123)
T ss_dssp             CCTTGGGCHHHHHHHTTSSCCHHHHHHHHHHHHHHHHC--
T ss_pred             CChhHhHHHHHHHHHHHcCCCCchHhHHHHHHHHhcccCC
Confidence            9999999999999999999999999999999999999975

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=99.51  E-value=2.1e-14  Score=115.17  Aligned_cols=83  Identities=14%  Similarity=0.097  Sum_probs=69.6

Q ss_pred             CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccceeeeeecccCH--HHHHHH-HHHHHHHHHH
Q psy9275          71 APPGSDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVAQQKVQELQMEADNNR--ETVKQM-AGMQKLNSKI  147 (284)
Q Consensus        71 ~~~~~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~~~~tkvlIL~lr~NP--~a~~~~-~~le~Lk~EN  147 (284)
                      +++..++++|++||.+-+.+|++++.++..|     |...++|+|||++|+|+  ||++||  .+.++. .+++.|++||
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~L-----e~~~l~Gd~~~~~TKVl--H~~~NPa~~a~~~~~~~~e~Lq~E~   84 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQL-----ERRALQGDYDQSRTKVL--HMSLNPTSVARQRLREDHSQLQAEC   84 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHSSCCSCCCTTTEEEE--EESSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHhhccccCCccCeee--eecCChHHHHHHHHHHHHHHHHHHH
Confidence            4566799999999988888888888877666     57788999999999886  999999  444444 4999999999


Q ss_pred             HHHHHHHhhhhhH
Q psy9275         148 KSLELQGKRLREV  160 (284)
Q Consensus       148 e~L~~~l~~~e~~  160 (284)
                      ++|+.+++.++++
T Consensus        85 erLr~~v~~lEeg   97 (100)
T 1go4_E           85 ERLRGLLRAMERG   97 (100)
T ss_dssp             HHHHHHHTTCC--
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999865

>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A

Probab=91.75  E-value=0.75  Score=37.52  Aligned_cols=49  Identities=16%  Similarity=0.246  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV-YKAAKLNNKIKSLELQGKRLREVYKAA  187 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~-~E~~~Lk~qi~~~eKr~~RLKEVF~~K  187 (284)
                      +.+.|+.|.+.|+......... .-+.+.+......+-|.+.||++|++-
T Consensus        69 e~e~Lr~e~~~l~~~~~~~~~~q~~~~e~E~kAqa~Eerf~KLKe~yteL  118 (120)
T 3i00_A           69 DCEFLRAELDELRRQREDTEKAQRSLSEIERKAQANEQRYSKLKEKYSEL  118 (120)
T ss_dssp             HHHHHHHHHHHHHTTCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555544332222211 123445556667788999999999864

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=91.28  E-value=3.6  Score=36.62  Aligned_cols=20  Identities=15%  Similarity=0.260  Sum_probs=12.5

Q ss_pred             CCceEEEecCCeeeeeCCcc
Q psy9275         221 DENLLFQSTEGQLNLIETDY  240 (284)
Q Consensus       221 ed~LvF~~~~G~mkll~s~f  240 (284)
                      .|.+++-++.|.+=+...+|
T Consensus       219 ~~~Iv~Cp~CgRIL~~~~~~  238 (256)
T 3na7_A          219 SGDMITCPYCGRILYAEGAY  238 (256)
T ss_dssp             SSSCEECTTTCCEEECSCC-
T ss_pred             CCCEEECCCCCeeEEeCcch
Confidence            45677777788766655444

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=88.90  E-value=0.36  Score=44.92  Aligned_cols=112  Identities=13%  Similarity=0.244  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHhhceEEEee-CC--eeEEEe
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQ-GKRLREVYKAASQEFRETVYLLFGYKVDRT-NC--MYKLAS  214 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr-~~RLKEVF~~Ks~EFReav~~LlGYkIdf~-ng--~~rL~S  214 (284)
                      +++.|+++|++|.+.+..+         ++++.+..+- -+|++++     ++-.+-+...||.+|+-. ++  +|..+.
T Consensus       186 eie~L~~~~~~L~eEi~~L---------e~~~e~~~k~n~~rl~~L-----qk~~~~~~~~LGl~ie~~~~d~lkf~F~~  251 (315)
T 2ve7_A          186 KLESLEAKNRALNEQIARL---------EQERSTANKANAERLKRL-----QKSADLYKDRLGLEIRKIYGEKLQFIFTN  251 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHTTTTTH-----HHHHHHHHHHSCCCCC----------CCC
T ss_pred             HHHHHHHHHHHHHHHHHHH---------HHHHHhhhhhhHHHHHHH-----HHHHHHHHHHcceEEEeccCCeEEEEEEe
Confidence            5666677777666555443         3333333332 3344433     222355567999999988 34  666666


Q ss_pred             eccCCCCCceEEE--ec-CCeeeeeC-CcchhhhHHHHHHHhhhCCCchhhhHHh
Q psy9275         215 MYADGPDENLLFQ--ST-EGQLNLIE-TDYSKVLKPLLDLHLGRHHSIPMLLSAL  265 (284)
Q Consensus       215 ~Ya~s~ed~LvF~--~~-~G~mkll~-s~f~~~l~~~i~~wl~~~~SIPaFLAAL  265 (284)
                      +=..+|+..+.|.  .. ++.-+++. +|-...+++++ .-|+..+.++.||..+
T Consensus       252 id~~d~~re~~f~l~~~~~~~Y~v~~c~P~l~~~~~l~-~~lN~~~d~~~Fl~~~  305 (315)
T 2ve7_A          252 IDPKNPESPFMFSLHLNEARDYEVSDSAPHLEGLAEFQ-ENVRKTNNFSAFLANV  305 (315)
T ss_dssp             C---CCCCCC---------------------------------------------
T ss_pred             cCCCCCCceEEEEEEecCCCceEEEecCCCCccHHHHH-HHHhccCCHHHHHHHH
Confidence            6665666554444  44 45667766 33333444443 3456778899998765

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=87.32  E-value=5.4  Score=47.69  Aligned_cols=62  Identities=13%  Similarity=0.206  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH-----HHHHHHHHHHHhHHHHHHHHHH----------HHHHHHHHHHHHHHHhhc
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV-----YKAAKLNNKIKSLELQGKRLRE----------VYKAASQEFRETVYLLFG  200 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~-----~E~~~Lk~qi~~~eKr~~RLKE----------VF~~Ks~EFReav~~LlG  200 (284)
                      .+...+++.+++.++|..+...     .|...|+.+++..+.|+.|-..          =|++.+.+|......|.|
T Consensus      2029 ~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~~~l~~~~~~L~G 2105 (3245)
T 3vkg_A         2029 KQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVVG 2105 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHhccH
Confidence            5555666666666666665554     6778888888888888877544          488888888765444443

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=86.97  E-value=3.7  Score=36.04  Aligned_cols=63  Identities=19%  Similarity=0.112  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HHHHHhhceEEE
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFR----ETVYLLFGYKVD  204 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFR----eav~~LlGYkId  204 (284)
                      -+..|..||..|..++....  .|+..|+.++++++....+...-.++ -.|=.    +-.-.|+|.+|-
T Consensus        21 LV~~L~~En~~L~~ql~~k~--~ei~~L~~ql~sl~~~~~~~~~~~~~-~~e~i~i~~DL~e~LTGl~V~   87 (190)
T 4emc_A           21 LVANLVNENFVLSEKLDTKA--TEIKQLQKQIDSLNAQVKELKTQTSQ-QAENSEVIKDLYEYLCNVRVH   87 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHSEECC
T ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhhhhhhHHHH-HHHhhhHHHHHHHHccCcEEE
Confidence            68899999999999998665  78999999999999999887766654 22222    333345676554

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=85.80  E-value=3.8  Score=32.53  Aligned_cols=45  Identities=20%  Similarity=0.303  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH--------------------------HHHHHHHHHHHhHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV--------------------------YKAAKLNNKIKSLELQGKRLREV  183 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~--------------------------~E~~~Lk~qi~~~eKr~~RLKEV  183 (284)
                      .++.|+.||++|+.++..++.-                          .-..+.+..++.+...+.||++-
T Consensus        20 ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~   90 (100)
T 1go4_E           20 KVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLREDHSQLQAECERLRGL   90 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999888776542                          11335667788888888888765

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=85.23  E-value=5.7  Score=30.38  Aligned_cols=57  Identities=19%  Similarity=0.331  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275         138 AGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG  200 (284)
Q Consensus       138 ~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG  200 (284)
                      .++..|+-|++.|+.+-..+.  .+..+++...+.+...+++|++--+.    +.+-+.+|+|
T Consensus        20 dtI~lLqmEieELKekN~~L~--~e~~e~~~~~~~L~~en~qLk~E~~~----wq~Rl~~LLg   76 (81)
T 2jee_A           20 DTITLLQMEIEELKEKNNSLS--QEVQNAQHQREELERENNHLKEQQNG----WQERLQALLG   76 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhhHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            488899999999988876655  66777888888888899999887554    4444555555

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.70  E-value=1.5  Score=39.06  Aligned_cols=26  Identities=15%  Similarity=0.224  Sum_probs=10.0

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy9275         164 AKLNNKIKSLELQGKRLREVYKAASQ  189 (284)
Q Consensus       164 ~~Lk~qi~~~eKr~~RLKEVF~~Ks~  189 (284)
                      ..++.++...+......+.-+...+.
T Consensus       128 ~~~~~~l~~~~~~l~~~~~~~~~~~~  153 (256)
T 3na7_A          128 EDLKKEMLELEKLALELESLVENEVK  153 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344443333333333333333

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.69  E-value=1.2  Score=31.32  Aligned_cols=30  Identities=13%  Similarity=0.212  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKI  170 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi  170 (284)
                      ++++|+.||+.|+.++..+.  .+..+++.++
T Consensus        20 d~eaLk~E~~eLk~k~~~L~--~~~~el~~~l   49 (53)
T 2yy0_A           20 EIELLRLELAEMKEKYEAIV--EENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            78999999999998876554  3444444443

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=84.27  E-value=7.2  Score=29.63  Aligned_cols=58  Identities=17%  Similarity=0.168  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE---FRETVYLL  198 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E---FReav~~L  198 (284)
                      .|..+..+|..|..+|+.++  ..+.+-+.+=..+.....|+.+++.-||.+   ||+...+|
T Consensus        14 klq~~E~rN~~Le~~v~~le--~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLakL   74 (79)
T 3cvf_A           14 KVQDLETRNAELEHQLRAME--RSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLARL   74 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            68889999999999999888  556666666677778888999999999875   55555553

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=83.70  E-value=7.8  Score=28.97  Aligned_cols=58  Identities=21%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHh
Q psy9275         139 GMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQE---FRETVYLL  198 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~E---FReav~~L  198 (284)
                      .|..+..+|..|..+|+.++  ..+.+-+.+=........++.+++.-||.+   ||+...+|
T Consensus         8 kLq~~E~~N~~Le~~v~~le--~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elrq~LakL   68 (72)
T 3cve_A            8 KLQEVEIRNKDLEGQLSEME--QRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELRDNLAKL   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            68889999999999999888  456666666667777788999999999865   55555553

>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*

Probab=82.74  E-value=11  Score=28.98  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=44.1

Q ss_pred             ccCH--HHHH-----HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy9275         128 DNNR--ETVK-----QMAGMQKLNSKIKSLELQGKRLREVYKAAKLNNKIKSLELQGKRLREVYKAASQEFRETVYLLFG  200 (284)
Q Consensus       128 r~NP--~a~~-----~~~~le~Lk~ENe~L~~~l~~~e~~~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav~~LlG  200 (284)
                      ..||  ..|+     |...|..--.||+.|...         +..++.+|..+...+.+|+++=. ..+-+-.+|-.|+|
T Consensus        14 ~e~pse~YWk~lAE~Rr~AL~eaL~EN~~Lh~~---------ie~~~eEi~~Lk~en~~L~elA~-~~q~la~~i~~L~~   83 (83)
T 1wlq_A           14 KENPSSQYWKEVAEQRRKALYEALKENEKLHKE---------IEQKDSEIARLRKENKDLAEVAE-HVQYMAEVIERLSN   83 (83)
T ss_dssp             CCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHTHHHHH-HHHHHHHHHHHTTC
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcC
Confidence            4678  4444     333677777889988755         44677888999999999998743 35666666766665

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=82.67  E-value=3.7  Score=44.15  Aligned_cols=18  Identities=17%  Similarity=0.239  Sum_probs=9.0

Q ss_pred             HHHHHHHhHHHHHHHHHH
Q psy9275         165 KLNNKIKSLELQGKRLRE  182 (284)
Q Consensus       165 ~Lk~qi~~~eKr~~RLKE  182 (284)
                      +|+.++.++++.++.|++
T Consensus      1020 ~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444455555555555544

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=82.14  E-value=29  Score=32.74  Aligned_cols=108  Identities=13%  Similarity=0.177  Sum_probs=50.1

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc-cccceeeeeecccCH-HHHH-HHHHHHHHHHHHHHHH
Q psy9275          75 SDRAKLEVLEKVIEGYRQRMEHIEADQGLVCVIPGQNSEKVA-QQKVQELQMEADNNR-ETVK-QMAGMQKLNSKIKSLE  151 (284)
Q Consensus        75 ~l~~ki~eLE~~l~~~R~~~~~~~~~l~~~~lE~~~~~g~~~-~~~tkvlIL~lr~NP-~a~~-~~~~le~Lk~ENe~L~  151 (284)
                      .+..+-.+||..++..|.........+.       ...++++ +..+.+      -+| ...+ .....+.+.++.+..+
T Consensus       364 ~l~~~~~~le~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  430 (487)
T 3oja_A          364 TLEQKKKALDEQVSNGRRAHAELDGTLQ-------QAVGQIELQHATEE------QSPLQLLRAIVKRYEEMYVEQQSVQ  430 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHTTSSCCCCCSSC------CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHH-------Hhhchhhhcccccc------cCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            3445555666666666655555544442       1123343 333322      256 3333 3335666666666666


Q ss_pred             HHHhhhhhH--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy9275         152 LQGKRLREV--YKAAKLNNKIKSLELQGKRLREVYKAASQEFRETV  195 (284)
Q Consensus       152 ~~l~~~e~~--~E~~~Lk~qi~~~eKr~~RLKEVF~~Ks~EFReav  195 (284)
                      .+.......  .++..++++-+.++|-++-+...-..+.+.+.+||
T Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  476 (487)
T 3oja_A          431 NNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELV  476 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHH
Confidence            654433222  23334444444444444444444444444444444

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.37  E-value=20  Score=31.31  Aligned_cols=22  Identities=9%  Similarity=0.131  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhH
Q psy9275         139 GMQKLNSKIKSLELQGKRLREV  160 (284)
Q Consensus       139 ~le~Lk~ENe~L~~~l~~~e~~  160 (284)
                      ++..|+.+|..|..+++.++..
T Consensus        96 el~~l~~~~~~l~~~ireLEq~  117 (189)
T 2v71_A           96 DLSQTRAIKEQLHKYVRELEQA  117 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888888888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00