Psyllid ID: psy9363

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-
Protein Sequence
MDSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGHYRP
Secondary Structure (PSIPRED)
ccccccccccccHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEEccccccccccccccHHHHHHccccccccccccccccccccccHHHHcccccHHHHHHHHHHHcccccccccccEEEEccccccccccccccEEEEEEEEEcccccEEEEEEEccccccccccEEccEEEEEEcccccEEEEEcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEccccHHHHHccccccccccccccccccccccccEEEEEcccccccHHHHHHHHccccccEEEccccccccccccccccccccEEEccccccccHHHHHHHcccccccEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEcccccHHHHHHHccccEEEEccccccccHHHHHHHHHHcccccEEEEEccccccccccccccccccHHHHHHHcEccccccHHHHHHHHHHcHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHccHHHHHHHHHHHHHHHcccHHHHHHHcccccccccEcccHccccEEEEEcccEEEEEEEEcccccccEEEEEEEcccccccccccEccEEEEEEEccccccEEccccccccccHHHHHHHHccccccccccHHHccEEEEEccccEEEEEcHHHHHHHHHHHHHcccccccccHHHcccccEEEEccHHHHHHcHHHHHHHHHHccccEEEcccccEEcccccccHHcccEEEEEcccccccHHHHHHHHHcccHHEEEccccccccccccccccccc
Coil and Loop (DISEMBL)
mdsrvsnagkthdEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIrlksssapahsYLAEVVFFVHLgrtlcdedfvkegsllhylpklsslrftknpilaeERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFleanprvgdnyFQVMeddiglrvcdseghrgtiryvgsvegtqgvwygidwdsetrgkhdgshngvkYFWThsttsgsfmrrdklnfgSSFMEALHRKYvetdneltVRENVEEVKAsinapflelvgfdqvheeqntnklpipndtsgvmeqifpqghihtltlgnMGYIWADILKLLANFpvtclklpsnrittldsvpgmFSSLEELYLqennivdwgevnalgslpnlkylnLASTNlrniklnkeghyrp
Flexible Loop (DISEMBL)
mdsrvsnagkthdeieqavPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHylpklsslrftknpilaeervvssrektiarlgglkllngsaierqerqgseydYIKEFGAVWLDEKRRAEFleanprvgdnyFQVMEDDIGLRVCDSeghrgtiryvgsvegtqGVWYGIDWDSETRgkhdgshngVKYFWThsttsgsfMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLnlastnlrniklnkeghyrp
Low Complexity Region (SEG)
MDSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGHYRP
Disordered region (IsUnstruct)
****************QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI******GSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH**************SGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK*********
Disordered Region (DISOPRED)
************DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYV***********************LELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL********
Disordered Region (DISEMBL)
***********HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGHYRP
Disordered Region (DISPRO)
***RVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEGHYRP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	421	2.2.26 [Sep-21-2011]
Q5U378	521	Tubulin-specific chaperon	yes	N/A	0.539	0.435	0.305	2e-24
Q15813	527	Tubulin-specific chaperon	yes	N/A	0.548	0.438	0.267	8e-23
Q5RBD9	527	Tubulin-specific chaperon	yes	N/A	0.503	0.402	0.314	2e-21
Q55CN0	525	Tubulin-specific chaperon	yes	N/A	0.532	0.426	0.310	5e-21
Q5U508	522	Tubulin-specific chaperon	N/A	N/A	0.496	0.400	0.337	7e-21
Q8CIV8	524	Tubulin-specific chaperon	yes	N/A	0.517	0.416	0.296	2e-20
Q5FVQ9	524	Tubulin-specific chaperon	yes	N/A	0.517	0.416	0.292	8e-20
Q32KS0	528	Tubulin-specific chaperon	yes	N/A	0.515	0.410	0.327	6e-18
P39937	518	Protein PAC2 OS=Saccharom	yes	N/A	0.232	0.189	0.306	3e-07
P35458	1224	Dynactin subunit 1 OS=Gal	no	N/A	0.159	0.054	0.4	7e-06

>sp|Q5U378|TBCE_DANRE Tubulin-specific chaperone E OS=Danio rerio GN=tbce PE=2 SV=2

 Score =  114 bits (284), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 132/295 (44%), Gaps = 68/295 (23%)

Query: 180 VMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
           ++++ +G RVC  +G RGT+RYVG V  T GVW G++WD   RGKHDGSH+GV+YF    
Sbjct: 2   MLDEAVGRRVC-CDGERGTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRH 60

Query: 240 TTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH 299
            T GSF+R  K +FG  ++ AL ++Y     E+T     EE+K  I++  + +VGF+ V 
Sbjct: 61  PTGGSFVRPQKASFGVDYVTALKQRYEVEIEEVT----AEEMK--ISSKTVVMVGFENVK 114

Query: 300 EEQNTNKL------------PIPN-------------DTSG-----------VMEQIFPQ 323
           ++Q+   L            P P              D SG           + EQ+   
Sbjct: 115 KKQSVKNLTEVGLRRCEVSAPGPENEIRNTTPFVQSLDLSGNLLSSWEVLAAITEQLDSL 174

Query: 324 GHIH-----------------------TLTLGNMGYIWADILKLLANF-PVTCLKLPSNR 359
             +H                        L++ +    W  +L     +  V  L L  N 
Sbjct: 175 QELHLSHNRLSISSAPSSLSSAFSHLRVLSINSCALTWTQVLHCAPMWQQVEELYLADNN 234

Query: 360 ITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
           IT L     +  +L  L L  N I     V  +  LP L+ LNL+ST+L  IK +
Sbjct: 235 ITELLRPEHVLQALTVLDLSNNQIAQ-ETVLEISHLPRLERLNLSSTSLSEIKFS 288

Tubulin-folding protein; involved in the second step of the tubulin folding pathway.
Danio rerio (taxid: 7955)

>sp|Q15813|TBCE_HUMAN Tubulin-specific chaperone E OS=Homo sapiens GN=TBCE PE=1 SV=1

 Score =  108 bits (270), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 124/295 (42%), Gaps = 64/295 (21%)

Query: 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           D IG RV +  G   T+R+ G V    G W G++WD+  RGKHDGSH G  YF     T 
Sbjct: 8   DVIGRRV-EVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTG 66

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
           GSF+R +K+NFG+ F+ A+  +YV  D      E+ +E   +I    +E +GFD + ++Q
Sbjct: 67  GSFIRPNKVNFGTDFLTAIKNRYVLEDGP---EEDRKEQIVTIGNKPVETIGFDSIMKQQ 123

Query: 303 N-----------TNKLPIPNDTSGVMEQI------------------------------- 320
           +              +    +  GV E                                 
Sbjct: 124 SQLSKLQEVSLRNCAVSCAGEKGGVAEACPNIRKVDLSKNLLSSWDEVIHIADQLRHLEV 183

Query: 321 ---------FPQGHIHT--------LTLGNMGYIWADILKLLANFP-VTCLKLPSNRITT 362
                    FP G + T        L L   G  WA++L+ +A  P +  L L SN I  
Sbjct: 184 LNVSENKLKFPSGSVLTGTLSVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNNIFI 243

Query: 363 LDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEG 417
            +    +  +++ L L  N ++D  ++  +  LP L+ L L+ T + ++     G
Sbjct: 244 SERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAG 298

Tubulin-folding protein; involved in the second step of the tubulin folding pathway. Seems to be implicated in the maintenance of the neuronal microtubule network. Involved in regulation of tubulin heterodimer dissociation.

Homo sapiens (taxid: 9606)

>sp|Q5RBD9|TBCE_PONAB Tubulin-specific chaperone E OS=Pongo abelii GN=TBCE PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/248 (31%), Positives = 117/248 (47%), Gaps = 36/248 (14%)

Query: 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           D IG RV +  G   T+R+ G V    G W G++WD+  RGKHDGSH G  YF     T 
Sbjct: 8   DVIGQRV-EVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFQCRHPTG 66

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
           GSF+R +K+NFG+ F+ A+  +YV  D      E+ +E   +I    +E +GFD + ++Q
Sbjct: 67  GSFIRPNKVNFGTDFLTAIKNRYVLEDGP---EEDRKEQIVTIGNKPVETIGFDSIMKQQ 123

Query: 303 N-----------TNKLPIPNDTSGVMEQIFPQGHIHTLTLG-NMGYIWADILKL------ 344
           +              +    +  GV E      +I  + L  N+   W +++ +      
Sbjct: 124 SQLSKLQEVSLRNCAVSCAGEKGGVAEGC---PNIRKVDLSKNLLSSWDEVIHIADQLRH 180

Query: 345 --LANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV--NALGSLPNLKY 400
             + N     LK PS  + T     G  S+L+ L L +  I  W EV   A+G  P L+ 
Sbjct: 181 LEVLNVSENKLKFPSGSVLT-----GTLSALKVLVLNQTGIT-WAEVLRCAMGC-PGLEE 233

Query: 401 LNLASTNL 408
           L L S N+
Sbjct: 234 LYLESNNI 241

Tubulin-folding protein; involved in the second step of the tubulin folding pathway. Seems to be implicated in the maintenance of the neuronal microtubule network. Involved in regulation of tubulin heterodimer dissociation.

Pongo abelii (taxid: 9601)

>sp|Q55CN0|TBCE_DICDI Tubulin-specific chaperone E OS=Dictyostelium discoideum GN=tbce PE=3 SV=1

 Score =  102 bits (254), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 134/261 (51%), Gaps = 37/261 (14%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV   +G  GTIRY G V+G +G WYGI+WD   RGKH G+  G +YF   +  SGS
Sbjct: 15  IGERVKGDDGSVGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYFKCINKGSGS 74

Query: 245 FMRRDKLNFGSSFMEALHRKY---VETDNELTVRENVEEVKASINAPFLELVGFDQVHEE 301
           FM+ +KL  G +FM+++  K+   ++  ++L V    E++K  I     +++G +Q  E 
Sbjct: 75  FMKYEKLIKGETFMKSISDKFHQKIDNYDDLYVDSTKEDIKIQI-----QMIGMNQTREN 129

Query: 302 Q---------NTNKLPIPN-DTSGVMEQIFPQGHIHTLTLGN-MGYIWADILKLLANFP- 349
           Q         + + LPI   D S ++   F   ++  L L N +   W  I+KLL   P 
Sbjct: 130 QKKFIAQTLLSASYLPISEIDESPLIYNNFK--NLIELNLSNCLLNSWTQIVKLLKQLPN 187

Query: 350 VTCLKLPSNRIT-TLDSVPGMFSS------------LEELYLQENNIVDWGEVNALGS-- 394
           +  L L +NR++  +D      +S            +++L L  +N+ +W  V+++    
Sbjct: 188 LNRLHLCNNRLSFNIDEFKKEVNSNNEYGNSIDDCNVKDLILVNSNLSNWSIVSSICKYL 247

Query: 395 LPNLKYLNLASTNLRNIKLNK 415
             N++ + L+S ++ NI L K
Sbjct: 248 FKNIESICLSSNSIENINLFK 268

Tubulin-folding protein; involved in the second step of the tubulin folding pathway.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5U508|TBCE_XENLA Tubulin-specific chaperone E OS=Xenopus laevis GN=tbce PE=2 SV=1

 Score =  102 bits (253), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/234 (33%), Positives = 117/234 (50%), Gaps = 25/234 (10%)

Query: 189 VCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRR 248
           +CD  G   T+RYVG+V  T G+W G++WD+  RGKH+G+H G KYF     T GSF+R 
Sbjct: 15  ICD--GEYATVRYVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRL 72

Query: 249 DKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNT-NKL 307
            K NFG  F+ AL ++Y      L   +N E V   I    +ELVGF+ + EEQ+  NKL
Sbjct: 73  KKANFGVDFLAALRKRY-----GLKSEQNEELV---IGKKTVELVGFESIQEEQSKLNKL 124

Query: 308 P------IPNDTSGVMEQIFPQG-HIHTLTLG-NMGYIWADILKLLANFP-VTCLKLPSN 358
                       +G   QI     +I T  L  N+   W  +  + +    +T L L  N
Sbjct: 125 KDVSLRECAVSNAGEKGQICHSCPNIMTADLSKNLFSSWESLAHISSQLENLTSLDLSEN 184

Query: 359 RI---TTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLASTNL 408
           ++   +   S+   F +L+ L L    +  W E+    S+ P L+ L+L S ++
Sbjct: 185 KLNPSSNPSSLATSFCNLKVLSLNRTGM-KWNEILQCASMWPALEELHLVSNDI 237

Tubulin-folding protein; involved in the second step of the tubulin folding pathway.

Xenopus laevis (taxid: 8355)

>sp|Q8CIV8|TBCE_MOUSE Tubulin-specific chaperone E OS=Mus musculus GN=Tbce PE=1 SV=1

 Score =  100 bits (250), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 25/243 (10%)

Query: 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           D IG RV +  G   T+R+ G+V    G+W G++WD+  RGKHDGSH G  YF     T 
Sbjct: 8   DVIGRRV-EVNGEYATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTG 66

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
           GSF+R  K+NFG  F+ AL ++YV  D      ++       + +  ++ +GF+ + ++Q
Sbjct: 67  GSFVRPSKVNFGDDFLTALKKRYVLEDGP---DDDENSCSLKVGSKQVQTIGFEHITKKQ 123

Query: 303 NTNKLPIPNDTS------------GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP- 349
             ++L    D S            G + +  P   +  L+  N+   W +++ +      
Sbjct: 124 --SQLRALQDISLWNCAVSHAGEQGRIAEACPNIRVVNLS-KNLLSTWDEVVLIAEQLKD 180

Query: 350 VTCLKLPSNRITTLDSVPGM---FSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLAS 405
           +  L L  N++      P +   FS+L+ L L +  I  W EV +   S P L+ L L S
Sbjct: 181 LEALDLSENKLQFPSDSPTLTRTFSTLKTLVLNKTGIT-WTEVLHCAPSWPVLEELYLKS 239

Query: 406 TNL 408
            N+
Sbjct: 240 NNI 242

Tubulin-folding protein; involved in the second step of the tubulin folding pathway. Seems to be implicated in the maintenance of the neuronal microtubule network. Involved in regulation of tubulin heterodimer dissociation.

Mus musculus (taxid: 10090)

>sp|Q5FVQ9|TBCE_RAT Tubulin-specific chaperone E OS=Rattus norvegicus GN=Tbce PE=2 SV=1

 Score = 98.6 bits (244), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 118/243 (48%), Gaps = 25/243 (10%)

Query: 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           D IG RV +  G   T+R+ G+V    G+W G++WD+  RGKHDGSH G  YF     T 
Sbjct: 8   DVIGRRV-EVNGEYATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTG 66

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
           GSF+R + +NFG  F+ AL ++YV TD      ++ +     + +  ++ +GF+ + ++Q
Sbjct: 67  GSFVRPNIVNFGEDFLTALKKRYVLTDGP---DDDEKSCSLKVGSKQVQTIGFEHITKKQ 123

Query: 303 NTNKLPIPNDTS------------GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP- 349
             ++L    D S            G + +  P   +  L+  N+   W +++ +      
Sbjct: 124 --SQLRSLQDISLWKCAVSCAGERGRIAEACPNIRVVDLS-KNLLSTWDEVILIAEQLKD 180

Query: 350 VTCLKLPSNRITTLDSVPGM---FSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLAS 405
           +  L L  N++      P +   FS+L+ L L +  I  W EV +   S P L+ L L S
Sbjct: 181 LEALDLSENKLQFPSDSPTLTRTFSTLKTLVLNKTGIT-WTEVLHCAPSWPVLQELYLKS 239

Query: 406 TNL 408
             +
Sbjct: 240 NGI 242

Tubulin-folding protein; involved in the second step of the tubulin folding pathway. Seems to be implicated in the maintenance of the neuronal microtubule network. Involved in regulation of tubulin heterodimer dissociation.

Rattus norvegicus (taxid: 10116)

>sp|Q32KS0|TBCE_BOVIN Tubulin-specific chaperone E OS=Bos taurus GN=TBCE PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 119/244 (48%), Gaps = 27/244 (11%)

Query: 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           D IG RV +  G   T+R+ G V    G+W G++WD+  RGKHDGSH G  YF     T+
Sbjct: 8   DVIGRRV-EVNGEHATVRFSGLVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTA 66

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
           GSF+R  K+NFG  F+ A+  +YV  D      E  E++    N P +E +GFD V ++Q
Sbjct: 67  GSFIRPHKVNFGVDFLTAIKNRYVLEDE--PKEEETEQIVIIGNKP-VETIGFDSVIKQQ 123

Query: 303 NTNKLPIPNDTS------------GVMEQIFPQGHIHTLTLG-NMGYIWADILKLLANFP 349
             ++L    D S            G + +  P  +I ++ L  N+   W +++ +     
Sbjct: 124 --SQLSKLQDVSLRNCAVNGAGDKGEIAKACP--NIRSIDLSKNLLSSWEEVIDIADQLK 179

Query: 350 -VTCLKLPSNRIT---TLDSVPGMFSSLEELYLQENNIVDWGEVNALGS-LPNLKYLNLA 404
            +  L L  N++T   +  S  G F +L+ L L     V W EV    S  P L+ L L 
Sbjct: 180 HLEVLNLSENKLTSPSSSPSPTGTFPTLKVLVLNRTG-VTWAEVLRCASGWPVLEKLYLE 238

Query: 405 STNL 408
           S N+
Sbjct: 239 SNNI 242

Tubulin-folding protein; involved in the second step of the tubulin folding pathway. Seems to be implicated in the maintenance of the neuronal microtubule network. Involved in regulation of tubulin heterodimer dissociation.

Bos taurus (taxid: 9913)

>sp|P39937|PAC2_YEAST Protein PAC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PAC2 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 13/111 (11%)

Query: 194 GHRGTIRYVGSVEGTQGV-WYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252
           G+  TI+++G ++    V  YG++WD  +RGKH G+ + + YF      SGSF++  K+ 
Sbjct: 13  GYFCTIKFIGVIKPWPSVKAYGVEWDDHSRGKHSGTIDDIHYFDVQIPNSGSFLKESKIK 72

Query: 253 FGS----SFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH 299
                  +F EAL  KY  + N +           SI    +E +GFD+++
Sbjct: 73  SPGVRRITFYEALSEKYGGSSNNIN--------DLSIGNKRVEGLGFDELN 115

Required for viability in the absence of the kinesin-related CIN8 mitotic motor. Seems to be involved in the assembly of alpha-tubulin.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P35458|DCTN1_CHICK Dynactin subunit 1 OS=Gallus gallus GN=DCTN1 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 3/70 (4%)

Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           +G RV    +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF T     G
Sbjct: 30  VGSRVEVIGKGHRGTVAYVGATLXATGKWVGVILD-EAKGKNDGTVQGRKYF-TCEENHG 87

Query: 244 SFMRRDKLNF 253
            F+R+ ++  
Sbjct: 88  IFVRQSQIQV 97

Dynactin is a major component of activator I, a 20S polypeptide complex that stimulates dynein-mediated vesicle transport.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
156544686	525	PREDICTED: tubulin-specific chaperone E-	0.536	0.430	0.358	3e-29
91079236	517	PREDICTED: similar to beta-tubulin cofac	0.541	0.441	0.314	4e-29
119590429	464	tubulin-specific chaperone e, isoform CR	0.534	0.484	0.323	1e-27
326429505	354	hypothetical protein PTSG_06731 [Salping	0.498	0.593	0.331	1e-26
383850534	527	PREDICTED: tubulin-specific chaperone E-	0.529	0.423	0.332	2e-26
77748012	306	Zgc:123075 [Danio rerio]	0.539	0.741	0.347	3e-26
307182233	705	Tubulin-specific chaperone E [Camponotus	0.524	0.313	0.327	5e-26
307210248	527	Tubulin-specific chaperone E [Harpegnath	0.527	0.421	0.342	8e-26
332026204	432	Tubulin-specific chaperone E [Acromyrmex	0.494	0.481	0.358	2e-25
350400723	746	PREDICTED: tubulin-specific chaperone E-	0.522	0.294	0.326	7e-25

>gi|156544686|ref|XP_001605321.1| PREDICTED: tubulin-specific chaperone E-like [Nasonia vitripennis]

 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 106/296 (35%), Positives = 146/296 (49%), Gaps = 70/296 (23%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV D EGH GT++YVG+V  T+G W GIDWD  +RGKH+G++ G+KYF T   TSGS
Sbjct: 8   IGCRV-DCEGHIGTVKYVGTVGNTKGQWLGIDWDDPSRGKHNGTYEGLKYFETWHPTSGS 66

Query: 245 FMRRDKLNFGSSFMEALHRKYVETDNELT--VRENVEEVKASINAPFLELVGFDQVHEEQ 302
           F+R  K NFG S  EA+  +Y   D+EL    R+++  V+ SINAPF+E+VGF +V+++Q
Sbjct: 67  FIRPGKANFGISCPEAIKVRYGYIDDELAGIDRDSIASVQKSINAPFVEMVGFSKVNKKQ 126

Query: 303 NT-NKLPI-------------PNDTSGVMEQIFPQGHIHTLTLGNMGYIWADI---LKLL 345
           +  ++L I             P + + +   I      H L   N   + A+I   L++L
Sbjct: 127 SKFDQLKIVCMQAQCISSAGYPGELAALCSMIEELDLSHNLI--NSWKVVAEICTELQIL 184

Query: 346 AN--------------------FPV-----------------TCLK-LPS--------NR 359
                                 FPV                  CLK  PS        N 
Sbjct: 185 QQLNVSDNHLPVENGMEIYAHAFPVLRHLTMGRMKYDWPAVMQCLKAFPSIQELIVSYNN 244

Query: 360 ITTLDSVPGMFS--SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413
           I T+  V    +   L EL L+ N I +W EV  LG LP LK LNL S  + +I+ 
Sbjct: 245 IETISGVEESLNIMKLTELSLEHNLISNWNEVLKLGILPCLKGLNLNSNKIEDIRF 300

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91079236|ref|XP_970901.1| PREDICTED: similar to beta-tubulin cofactor E [Tribolium castaneum]

 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 141/289 (48%), Gaps = 61/289 (21%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG R+ +S G+ GT++YVG +EG   +W GIDWD+  RGKHDG  NGV+YF T + TSGS
Sbjct: 10  IGDRI-ESGGYIGTVKYVGPIEGKPSIWLGIDWDNPQRGKHDGRVNGVQYFTTRNPTSGS 68

Query: 245 FMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEE---VKASINAPFLELVGFDQV-HE 300
           F+R +K+N G S + ++  +Y + ++E T + N ++   ++ ++NAPFLE+VGFD+V H+
Sbjct: 69  FIRPEKVNCGKSALASIESRYGQIEDEFTAKINKQKQLLIQQNMNAPFLEMVGFDKVFHK 128

Query: 301 EQNTNKLPIPNDTSGVMEQIFPQ-------GHIHTLTLG-NMGYIWADILKLLANFP--- 349
           + +   L I N     +    P         +I  L +  N+   W  + ++    P   
Sbjct: 129 QSDFTALRIVNLRDQGINSAGPPLRLGETCPNIEELDISKNLLVSWESVFEICRQLPRLF 188

Query: 350 -------------------------VTCLKL--------------------PSNRITTLD 364
                                      C+ L                    P+N+I  L 
Sbjct: 189 WLNVSENLLDLPTISESFPNVTTLICGCMDLDWGHICQLGRIFPSVEEFRAPNNKIRGLS 248

Query: 365 SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413
           +  G F+ L+ L L+ NNI  W EV  LG LP+L+ L L    L+ I+ 
Sbjct: 249 TPEGFFTKLKLLDLEGNNIEFWTEVCKLGDLPHLEQLILEDIGLQLIEF 297

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119590429|gb|EAW70023.1| tubulin-specific chaperone e, isoform CRA_c [Homo sapiens]

 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 124/238 (52%), Gaps = 13/238 (5%)

Query: 183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           D IG RV +  G   T+R+ G V    G W G++WD+  RGKHDGSH G  YF     T 
Sbjct: 8   DVIGRRV-EVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTG 66

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
           GSF+R +K+NFG+ F+ A+  +YV  D      E+ +E   +I    +E +GFD + ++Q
Sbjct: 67  GSFIRPNKVNFGTDFLTAIKNRYVLEDGP---EEDRKEQIVTIGNKPVETIGFDSIMKQQ 123

Query: 303 NTNKLPIPNDT--SGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNR 359
           + NKL  P+ +  +G +        +  L L   G  WA++L+ +A  P +  L L SN 
Sbjct: 124 SENKLKFPSGSVLTGTL------SVLKVLVLNQTGITWAEVLRCVAGCPGLEELYLESNN 177

Query: 360 ITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEG 417
           I   +    +  +++ L L  N ++D  ++  +  LP L+ L L+ T + ++     G
Sbjct: 178 IFISERPTDVLQTVKLLDLSSNQLIDENQLYLIAHLPRLEQLILSDTGISSLHFPDAG 235

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|326429505|gb|EGD75075.1| hypothetical protein PTSG_06731 [Salpingoeca sp. ATCC 50818]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 79/238 (33%), Positives = 120/238 (50%), Gaps = 28/238 (11%)

Query: 196 RGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS 255
           RGT+RYVG V+G QG WYGI+WD  +RGKHDGSH GVKYF     T GSF++  K+N G 
Sbjct: 13  RGTVRYVGQVQGAQGTWYGIEWDDPSRGKHDGSHKGVKYFACSHATGGSFVKEKKVNRGV 72

Query: 256 SFMEALHRKYVETDN----ELTVRENVEEVKASINAPFLELVGFDQVH---------EEQ 302
           SF++AL  +Y E +     E+ VR+ +E          +ELVG D+V           E 
Sbjct: 73  SFLQALETRYGEEEAASHVEVNVRQRIE----------VELVGEDRVRSRIQRHDELREA 122

Query: 303 NTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRI- 360
               + I +     + +  P  +I  L+  N+   W+ ++ +    P +T L +  NR+ 
Sbjct: 123 QLRDMDINDTVEDTLAERCPNVNILDLSF-NLICKWSTVVAICKQLPRLTSLNISGNRLD 181

Query: 361 -TTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS-LPNLKYLNLASTNLRNIKLNKE 416
             T+D     F  +  LYL     + W +V  +   +PNL  L+     + +I ++ E
Sbjct: 182 FDTIDEETAAFHDVTCLYLSHIPGLQWDQVVQICRHMPNLTELHACENGMEHINMDAE 239

Source: Salpingoeca sp. ATCC 50818

Species: Salpingoeca sp. ATCC 50818

Genus: Salpingoeca

Family: Salpingoecidae

Order: Choanoflagellida

Superkingdom: Eukaryota

>gi|383850534|ref|XP_003700850.1| PREDICTED: tubulin-specific chaperone E-like [Megachile rotundata]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/301 (33%), Positives = 144/301 (47%), Gaps = 78/301 (25%)

Query: 184 DIGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
           +IG R+ CD  G+RGT++Y G V  T+G+W GIDWD  TRGKH+G++ G++YF     TS
Sbjct: 8   EIGSRIECD--GYRGTLKYCGPVGDTKGLWLGIDWDDPTRGKHNGTYEGIEYFKARHPTS 65

Query: 243 GSFMRRDKLNFGSSFMEALHRKYVETDNELT--VRENVEEVKASINAPFLELVGFDQVHE 300
           GSF+R  K  FG S  EA+  +Y   ++EL    R+ +  ++  INAPFLE+VGF +V++
Sbjct: 66  GSFIRPGKAKFGISCPEAIKMRYGLINDELAGIDRDTLTSLQKEINAPFLEVVGFSKVNK 125

Query: 301 EQNT-NKLPIPNDTSGVMEQIFPQG-----------HIHTLTLG----NMGYIWADI--- 341
           +Q+  ++L I     G+ EQ                +I  L +     N  +I ADI   
Sbjct: 126 KQSRFDQLKI----VGLREQCVSNAGKPDELKVLCPNIEELDISRNLINSWHIVADICCQ 181

Query: 342 -------------------LKLLANFPVTCLKLPSNRIT----TLDSVPGMFSSLEELYL 378
                              +K+L N  +T   L   ++      +     MF SL+EL L
Sbjct: 182 LNSLERLDVSENYLPTENDMKVLNNSFLTVKSLTMAKMNYNWFDIQQCMCMFPSLQELSL 241

Query: 379 QENNIVD--------------------------WGEVNALGSLPNLKYLNLASTNLRNIK 412
              NIVD                          W EV  LGSLP L+YLNL+S  +  I+
Sbjct: 242 S-FNIVDIIQKPIEDDNLMKINNLTLEGNLISSWDEVLKLGSLPCLEYLNLSSNKINKIR 300

Query: 413 L 413
            
Sbjct: 301 F 301

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|77748012|gb|AAI07630.1| Zgc:123075 [Danio rerio]

 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/242 (34%), Positives = 130/242 (53%), Gaps = 15/242 (6%)

Query: 180 VMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
           ++++ +G RVC  +G RGT+RYVG V  T GVW G++WD   RGKHDGSH+GV+YF    
Sbjct: 1   MLDEAVGRRVC-CDGERGTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRH 59

Query: 240 TTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH 299
            T GSF+R  K +FG  ++ AL ++Y     E+T     EE+K  I++  + +VGF++V 
Sbjct: 60  PTGGSFVRPQKASFGVDYVTALKQRYEVEIEEVT----AEEMK--ISSKTVVMVGFEKVK 113

Query: 300 EEQ--NTNKLPIPND----TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANF-PVTC 352
           ++Q  +  +L + ++    +S          H+  L++ +    W  +L     +  V  
Sbjct: 114 KKQLDSLQELHLSHNRLSISSAPSSLSSAFSHLRVLSINSCALAWTQVLHCAPMWQQVEE 173

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N IT L     +  +L  L L  N I     V  +  LP L+ LNL+ST+L  IK
Sbjct: 174 LYLADNNITELLRPEHVLQALTVLDLSNNQIAQ-ETVLEISHLPRLERLNLSSTSLSEIK 232

Query: 413 LN 414
            +
Sbjct: 233 FS 234

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|307182233|gb|EFN69564.1| Tubulin-specific chaperone E [Camponotus floridanus]

 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 139/290 (47%), Gaps = 69/290 (23%)

Query: 190 CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249
           CD  G+RGT++YVG V  T+G W GIDWD  TRGKH+G++ G+ YF    +TSGSF+R  
Sbjct: 197 CD--GYRGTLKYVGPVGNTKGEWLGIDWDDSTRGKHNGTYEGIVYFQARHSTSGSFIRPG 254

Query: 250 KLNFGSSFMEALHRKYVETDNELT--VRENVEEVKASINAPFLELVGFDQVHEEQNT-NK 306
           K+ FG S  +A+  +Y   D+EL    R+ V  ++  INAPFL+LVGF +V+++Q+  ++
Sbjct: 255 KVKFGISCPQAIKMRYGLIDDELAGIDRDEVSSLRREINAPFLDLVGFSKVNKKQSKFDQ 314

Query: 307 LPI---------------------PN-----------DTSGVMEQIFPQGH--IHTLTLG 332
           L I                     PN           ++  ++  I  Q H  I      
Sbjct: 315 LKIVWLREQCVSDAGRPDELRELCPNLEELDISKNLINSWKIVADICSQLHSLIRLNVSE 374

Query: 333 NMGYIWADILKLLANFP----VTCLKLPSNRITTLDSVPGMFSSLEE------------- 375
           N   +  D++ L  +F     +T  K+  N  + +     MFSS+EE             
Sbjct: 375 NYLPVKEDVMALKNSFATVKHLTIAKMNYNW-SDIQQCISMFSSIEELSVSFNIVTTIKE 433

Query: 376 ------------LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413
                       L L+ N I  W E+  LGSLP L+YLNL S  +  I+ 
Sbjct: 434 TITNINLMKIVTLILEGNLISSWDEILKLGSLPCLEYLNLNSNKIDRIRF 483

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307210248|gb|EFN86898.1| Tubulin-specific chaperone E [Harpegnathos saltator]

 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 99/289 (34%), Positives = 138/289 (47%), Gaps = 67/289 (23%)

Query: 190 CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249
           CD  G+RGT++YVG V  T+G W GIDWD  TRGKH+G++ G++YF    +TSGSF+R  
Sbjct: 15  CD--GYRGTLKYVGPVGNTKGQWLGIDWDDSTRGKHNGTYEGIEYFQARHSTSGSFIRPA 72

Query: 250 KLNFGSSFMEALHRKYVETDNELT--VRENVEEVKASINAPFLELVGFDQVHEEQNT-NK 306
           K  FG S  +A+  +Y   D++L    RE V  +K  INAPFLELVGF +V+++Q+  ++
Sbjct: 73  KAKFGISCPQAIEMRYGLIDDDLAGIDREEVSNLKKEINAPFLELVGFSKVNKKQSKFDQ 132

Query: 307 LPIP---------NDTSGVMEQIFPQGHIHTLT--LGNMGYIWADI---LKLLANFPVTC 352
           L I             S  +E++ P      ++  L N   I ADI   L  LA   V+ 
Sbjct: 133 LKIVWLREQCVSNAGESKELEELCPNLEELDISRNLINSWKIIADICSQLHSLARLDVSE 192

Query: 353 LKLP--------SNRITT---------------LDSVPGMFSSLEE-------------- 375
             LP         N  +T               +     MF S+EE              
Sbjct: 193 NHLPVEEDVVALKNSFSTVKHLTIARMNYNWSDIQQCLSMFPSIEELSVSFNIVTTIEDI 252

Query: 376 -----------LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL 413
                      L L+ N I +  E+  LGSLP L+YLNL S  +  I+ 
Sbjct: 253 PLRTNLIKIVTLILEGNLISNSDEILKLGSLPCLEYLNLNSNKIDGIRF 301

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332026204|gb|EGI66346.1| Tubulin-specific chaperone E [Acromyrmex echinatior]

 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 128/243 (52%), Gaps = 35/243 (14%)

Query: 190 CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249
           CD  G+RGT++YVG V  T+G W GIDWD  TRGKH+G++ GV+YF    +TSGSF+R  
Sbjct: 15  CD--GYRGTLKYVGPVGNTKGEWLGIDWDDSTRGKHNGTYEGVEYFQARHSTSGSFIRPG 72

Query: 250 KLNFGSSFMEALHRKYVETDNELT--VRENVEEVKASINAPFLELVGFDQVHEEQNT-NK 306
           K  FG S  +A+  +Y   D+EL    R+ V  ++  +NAPFLELVGF +V+++Q+  ++
Sbjct: 73  KAKFGISCPQAIKMRYGLIDDELAGIDRDEVSTLRKEMNAPFLELVGFSKVNKKQSKFDQ 132

Query: 307 LPI-------------PNDTSGVMEQIFPQGHIHTLT--LGNMGYIWADILKLL-----A 346
           L I             P +    +E++ P      L+  L N   I A+I   L      
Sbjct: 133 LKIVWLREQCVSNAGEPQE----LEELCPNLEELDLSRNLINSWKIVANICSQLRSLMRL 188

Query: 347 NFPVTCLKLPSNRI------TTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
           N  +  L L  N+I      +T       F  L +L++ EN I +W  ++ L  L NL+ 
Sbjct: 189 NVSLEYLNLNLNKIDRIRFSSTSTDKTASFPILRQLHISENLISEWQSISELDKLSNLED 248

Query: 401 LNL 403
           L  
Sbjct: 249 LKF 251

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400723|ref|XP_003485937.1| PREDICTED: tubulin-specific chaperone E-like [Bombus impatiens]

 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 137/291 (47%), Gaps = 71/291 (24%)

Query: 190 CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD 249
           CD  GH+GT++YVG V  T+G+W GIDWD  TRGKH+G++ GVKYF     TSGSF+R  
Sbjct: 234 CD--GHQGTLKYVGPVGKTKGLWLGIDWDDPTRGKHNGTYEGVKYFKARHPTSGSFIRPG 291

Query: 250 KLNFGSSFMEALHRKYVETDNELT--VRENVEEVKASINAPFLELVGFDQVHEEQNT-NK 306
           K  FG S  EA+  +Y   ++EL    R+ +  ++  INAPFLE+VGF +V+++Q+  ++
Sbjct: 292 KAKFGISCPEAIKIRYGLINDELAGIDRDTLTSLQKEINAPFLEVVGFSKVNKKQSKFDQ 351

Query: 307 LPI---------PNDTSGVMEQIFPQGHIHTLT--LGNMGYIWADILKLLANFPVTCLKL 355
           L I              G ++++ P      L+  L N   I ADI   L    +  L L
Sbjct: 352 LKIVWLREQCVSTTGNPGELKELCPNLEELDLSKNLINSWQIIADICCQLDC--LVRLNL 409

Query: 356 PSNRITT----------------------------LDSVPGMFSSLEELYLQEN--NIV- 384
             N + T                            +     MF SL+EL +  N  NI+ 
Sbjct: 410 SENYLPTEENMEILKDSFFMLKYLTIARMNYNWFDIQRCMSMFPSLQELSVSFNIVNIIH 469

Query: 385 ----------------------DWGEVNALGSLPNLKYLNLASTNLRNIKL 413
                                 +W ++  LGSLP L+YLNL S  +  I+ 
Sbjct: 470 KPIKDENLMKICKLTLEGNLISNWDDILKLGSLPRLEYLNLNSNKIDKIRF 520

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	421
ZFIN|ZDB-GENE-051030-120	521	tbce "tubulin folding cofactor	0.287	0.232	0.429	7e-28
UNIPROTKB|Q32KS0	528	TBCE "Tubulin-specific chapero	0.524	0.418	0.333	1.6e-22
UNIPROTKB|Q5U508	522	tbce "Tubulin-specific chapero	0.496	0.400	0.337	8.5e-22
UNIPROTKB|Q15813	527	TBCE "Tubulin-specific chapero	0.505	0.404	0.327	1.1e-20
UNIPROTKB|Q5RBD9	527	TBCE "Tubulin-specific chapero	0.503	0.402	0.334	1.1e-20
ASPGD|ASPL0000026995	606	AN5531 [Emericella nidulans (t	0.258	0.179	0.422	1.4e-20
FB|FBgn0033055	542	tbce "tubulin-specific chapero	0.522	0.405	0.288	1.6e-20
MGI|MGI:1917680	524	Tbce "tubulin-specific chapero	0.520	0.417	0.314	1.3e-19
DICTYBASE|DDB_G0269990	525	tbcE "tubulin binding cofactor	0.491	0.394	0.336	4.9e-19
UNIPROTKB|B7Z3P1	578	TBCE "cDNA FLJ59210, highly si	0.465	0.339	0.327	1.4e-18

ZFIN|ZDB-GENE-051030-120 tbce "tubulin folding cofactor E" [Danio rerio (taxid:7955)]

 Score = 277 (102.6 bits), Expect = 7.0e-28, Sum P(2) = 7.0e-28
 Identities = 55/128 (42%), Positives = 82/128 (64%)

Query:   180 VMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
             ++++ +G RVC  +G RGT+RYVG V  T GVW G++WD   RGKHDGSH+GV+YF    
Sbjct:     2 MLDEAVGRRVC-CDGERGTVRYVGPVPPTAGVWLGVEWDHPERGKHDGSHDGVRYFTCRH 60

Query:   240 TTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH 299
              T GSF+R  K +FG  ++ AL ++Y     E+T     EE+K  I++  + +VGF+ V 
Sbjct:    61 PTGGSFVRPQKASFGVDYVTALKQRYEVEIEEVTA----EEMK--ISSKTVVMVGFENVK 114

Query:   300 EEQNTNKL 307
             ++Q+   L
Sbjct:   115 KKQSVKNL 122

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|Q32KS0 TBCE "Tubulin-specific chaperone E" [Bos taurus (taxid:9913)]

 Score = 282 (104.3 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 80/240 (33%), Positives = 122/240 (50%)

Query:   183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
             D IG RV +  G   T+R+ G V    G+W G++WD+  RGKHDGSH G  YF     T+
Sbjct:     8 DVIGRRV-EVNGEHATVRFSGLVPPVAGLWLGVEWDNPERGKHDGSHEGTVYFKCRHPTA 66

Query:   243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
             GSF+R  K+NFG  F+ A+  +YV  D      E  E++    N P +E +GFD V ++Q
Sbjct:    67 GSFIRPHKVNFGVDFLTAIKNRYVLEDEPK--EEETEQIVIIGNKP-VETIGFDSVIKQQ 123

Query:   303 NT-NKLP---IPN---DTSGVMEQIFPQ-GHIHTLTLG-NMGYIWADILKLLANFP-VTC 352
             +  +KL    + N   + +G   +I     +I ++ L  N+   W +++ +      +  
Sbjct:   124 SQLSKLQDVSLRNCAVNGAGDKGEIAKACPNIRSIDLSKNLLSSWEEVIDIADQLKHLEV 183

Query:   353 LKLPSNRITTLDSVP---GMFSSLEELYLQENNIVDWGEVNALGS-LPNLKYLNLASTNL 408
             L L  N++T+  S P   G F +L+ L L    +  W EV    S  P L+ L L S N+
Sbjct:   184 LNLSENKLTSPSSSPSPTGTFPTLKVLVLNRTGVT-WAEVLRCASGWPVLEKLYLESNNI 242

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0048936 "peripheral nervous system neuron axonogenesis" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0014889 "muscle atrophy" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

UNIPROTKB|Q5U508 tbce "Tubulin-specific chaperone E" [Xenopus laevis (taxid:8355)]

 Score = 276 (102.2 bits), Expect = 8.5e-22, P = 8.5e-22
 Identities = 79/234 (33%), Positives = 118/234 (50%)

Query:   189 VCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRR 248
             +CD  G   T+RYVG+V  T G+W G++WD+  RGKH+G+H G KYF     T GSF+R 
Sbjct:    15 ICD--GEYATVRYVGNVPPTPGLWLGVEWDNHLRGKHNGTHEGTKYFTCSHPTGGSFIRL 72

Query:   249 DKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNT-NKL 307
              K NFG  F+ AL ++Y      L   +N E V   I    +ELVGF+ + EEQ+  NKL
Sbjct:    73 KKANFGVDFLAALRKRY-----GLKSEQNEELV---IGKKTVELVGFESIQEEQSKLNKL 124

Query:   308 PIPN------DTSGVMEQIFPQ-GHIHTLTLG-NMGYIWADILKLLANFP-VTCLKLPSN 358
                +        +G   QI     +I T  L  N+   W  +  + +    +T L L  N
Sbjct:   125 KDVSLRECAVSNAGEKGQICHSCPNIMTADLSKNLFSSWESLAHISSQLENLTSLDLSEN 184

Query:   359 RI---TTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLASTNL 408
             ++   +   S+   F +L+ L L    +  W E+    S+ P L+ L+L S ++
Sbjct:   185 KLNPSSNPSSLATSFCNLKVLSLNRTGM-KWNEILQCASMWPALEELHLVSNDI 237

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISS

UNIPROTKB|Q15813 TBCE "Tubulin-specific chaperone E" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 81/247 (32%), Positives = 120/247 (48%)

Query:   183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
             D IG RV +  G   T+R+ G V    G W G++WD+  RGKHDGSH G  YF     T 
Sbjct:     8 DVIGRRV-EVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTG 66

Query:   243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
             GSF+R +K+NFG+ F+ A+  +YV  D     R+  E++    N P +E +GFD + ++Q
Sbjct:    67 GSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRK--EQIVTIGNKP-VETIGFDSIMKQQ 123

Query:   303 NT-NKLP---IPN-------DTSGVMEQIFPQGHIHTLTLG-NMGYIWADILKL------ 344
             +  +KL    + N       +  GV E   P  +I  + L  N+   W +++ +      
Sbjct:   124 SQLSKLQEVSLRNCAVSCAGEKGGVAEAC-P--NIRKVDLSKNLLSSWDEVIHIADQLRH 180

Query:   345 --LANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYL 401
               + N     LK PS  + T     G  S L+ L L +  I  W EV   +   P L+ L
Sbjct:   181 LEVLNVSENKLKFPSGSVLT-----GTLSVLKVLVLNQTGIT-WAEVLRCVAGCPGLEEL 234

Query:   402 NLASTNL 408
              L S N+
Sbjct:   235 YLESNNI 241

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0008344 "adult locomotory behavior" evidence=IEA

GO:0009791 "post-embryonic development" evidence=IEA

GO:0014889 "muscle atrophy" evidence=IEA

GO:0048589 "developmental growth" evidence=IEA

GO:0048936 "peripheral nervous system neuron axonogenesis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=IDA

GO:0051087 "chaperone binding" evidence=TAS

GO:0005874 "microtubule" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

UNIPROTKB|Q5RBD9 TBCE "Tubulin-specific chaperone E" [Pongo abelii (taxid:9601)]

 Score = 267 (99.0 bits), Expect = 1.1e-20, P = 1.1e-20
 Identities = 83/248 (33%), Positives = 123/248 (49%)

Query:   183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
             D IG RV +  G   T+R+ G V    G W G++WD+  RGKHDGSH G  YF     T 
Sbjct:     8 DVIGQRV-EVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFQCRHPTG 66

Query:   243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
             GSF+R +K+NFG+ F+ A+  +YV  D     R+  E++    N P +E +GFD + ++Q
Sbjct:    67 GSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRK--EQIVTIGNKP-VETIGFDSIMKQQ 123

Query:   303 NT-NKLP---IPN-------DTSGVMEQIFPQGHIHTLTLG-NMGYIWADILKL------ 344
             +  +KL    + N       +  GV E   P  +I  + L  N+   W +++ +      
Sbjct:   124 SQLSKLQEVSLRNCAVSCAGEKGGVAEGC-P--NIRKVDLSKNLLSSWDEVIHIADQLRH 180

Query:   345 --LANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVN--ALGSLPNLKY 400
               + N     LK PS  + T     G  S+L+ L L +  I  W EV   A+G  P L+ 
Sbjct:   181 LEVLNVSENKLKFPSGSVLT-----GTLSALKVLVLNQTGIT-WAEVLRCAMGC-PGLEE 233

Query:   401 LNLASTNL 408
             L L S N+
Sbjct:   234 LYLESNNI 241

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISS

ASPGD|ASPL0000026995 AN5531 [Emericella nidulans (taxid:162425)]

 Score = 231 (86.4 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
 Identities = 49/116 (42%), Positives = 67/116 (57%)

Query:   193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF--WTHSTTSGSFMRRDK 250
             +GH  TIRYVG V+GT G W G++WD  TRGKH G HNGV+YF    +  T+GSF+R  +
Sbjct:    21 DGHLCTIRYVGKVDGTSGEWLGVEWDDPTRGKHSGQHNGVRYFRCLRNHPTAGSFVRPSR 80

Query:   251 -LNFGSSFMEALHRKYV---ETDNELTVRENVE-EVKASINAPFLELVGFDQVHEE 301
               +   SF+EA+  KY    E   E   R + E E      +   E VGFD++ ++
Sbjct:    81 PADSPRSFLEAVREKYASDFEQSRERQARPDAEFEEPIRFKSKIAEEVGFDKIRKQ 136

GO:0006457 "protein folding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0043014 "alpha-tubulin binding" evidence=IEA

FB|FBgn0033055 tbce "tubulin-specific chaperone E" [Drosophila melanogaster (taxid:7227)]

 Score = 266 (98.7 bits), Expect = 1.6e-20, P = 1.6e-20
 Identities = 69/239 (28%), Positives = 121/239 (50%)

Query:   185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
             +G R+   + + GT+RYVG V G  G W GI+WD   RGKH+G  +G +YF T + T GS
Sbjct:    14 LGTRIKIGDNY-GTVRYVGEVSGHMGSWLGIEWDDGLRGKHNGIVDGKRYFQTQTPTGGS 72

Query:   245 FMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNT 304
             F+R  K+   ++  +A   +Y+  D+       + E +AS+ A   E+VG D++  +Q+ 
Sbjct:    73 FIRPGKVGPCATLEDAARERYLNYDSSNVDESLIREAQASLQASLFEVVGMDKIARKQSK 132

Query:   305 ----NKLPI---PNDTSGVMEQIFPQGHIHTLTLGN-MGYIWADILKLLANFP-VTCLKL 355
                  ++ +   P + +G ++++    H+ TL + + + + W  +  +    P +T L L
Sbjct:   133 FEQLEEVSVDQTPVNAAGYLKELT---HLTTLNVSHTLIWNWEIVASIAQQLPSLTNLNL 189

Query:   356 PSNRIT--TLDSVPGM---FSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLASTNL 408
              SNR+   T   +  +   F  L+ + L+     DW +V     L PN+  L L   +L
Sbjct:   190 SSNRLVLPTSSQITELEPSFRQLKRINLRSCGFSDWKDVMHTALLWPNILSLGLQENSL 248

GO:0007021 "tubulin complex assembly" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0046785 "microtubule polymerization" evidence=IGI;IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0008582 "regulation of synaptic growth at neuromuscular junction" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:1917680 Tbce "tubulin-specific chaperone E" [Mus musculus (taxid:10090)]

 Score = 258 (95.9 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 76/242 (31%), Positives = 119/242 (49%)

Query:   183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
             D IG RV +  G   T+R+ G+V    G+W G++WD+  RGKHDGSH G  YF     T 
Sbjct:     8 DVIGRRV-EVNGEYATVRFCGAVPPVAGLWLGVEWDNPERGKHDGSHEGTMYFKCRHPTG 66

Query:   243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
             GSF+R  K+NFG  F+ AL ++YV  D      EN   +K  + +  ++ +GF+ + ++Q
Sbjct:    67 GSFVRPSKVNFGDDFLTALKKRYVLEDGP-DDDENSCSLK--VGSKQVQTIGFEHITKKQ 123

Query:   303 NTNKLPIPNDTS---GVMEQIFPQG-------HIHTLTLG-NMGYIWADILKLLANFP-V 350
             +  +L    D S     +     QG       +I  + L  N+   W +++ +      +
Sbjct:   124 S--QLRALQDISLWNCAVSHAGEQGRIAEACPNIRVVNLSKNLLSTWDEVVLIAEQLKDL 181

Query:   351 TCLKLPSNRITTLDSVPGM---FSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLAST 406
               L L  N++      P +   FS+L+ L L +  I  W EV +   S P L+ L L S 
Sbjct:   182 EALDLSENKLQFPSDSPTLTRTFSTLKTLVLNKTGIT-WTEVLHCAPSWPVLEELYLKSN 240

Query:   407 NL 408
             N+
Sbjct:   241 NI 242

GO:0000226 "microtubule cytoskeleton organization" evidence=IMP

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0007021 "tubulin complex assembly" evidence=TAS

GO:0007023 "post-chaperonin tubulin folding pathway" evidence=ISO

GO:0007409 "axonogenesis" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0009791 "post-embryonic development" evidence=IMP

GO:0014889 "muscle atrophy" evidence=IMP

GO:0048589 "developmental growth" evidence=IMP

GO:0048936 "peripheral nervous system neuron axonogenesis" evidence=IMP

GO:0051082 "unfolded protein binding" evidence=TAS

DICTYBASE|DDB_G0269990 tbcE "tubulin binding cofactor E" [Dictyostelium discoideum (taxid:44689)]

 Score = 253 (94.1 bits), Expect = 4.9e-19, P = 4.9e-19
 Identities = 81/241 (33%), Positives = 127/241 (52%)

Query:   185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
             IG RV   +G  GTIRY G V+G +G WYGI+WD   RGKH G+  G +YF   +  SGS
Sbjct:    15 IGERVKGDDGSVGTIRYQGKVDGFEGNWYGIEWDDPKRGKHQGTVKGKQYFKCINKGSGS 74

Query:   245 FMRRDKLNFGSSFMEALHRKYVET-DN--ELTVRENVEEVKASINAPFLELVGFDQVHEE 301
             FM+ +KL  G +FM+++  K+ +  DN  +L V    E++K  I     +++G +Q  E 
Sbjct:    75 FMKYEKLIKGETFMKSISDKFHQKIDNYDDLYVDSTKEDIKIQI-----QMIGMNQTREN 129

Query:   302 Q---------NTNKLPIPN-DTSGVMEQIFPQGHIHTLTLGN-MGYIWADILKLLANFP- 349
             Q         + + LPI   D S ++   F   ++  L L N +   W  I+KLL   P 
Sbjct:   130 QKKFIAQTLLSASYLPISEIDESPLIYNNFK--NLIELNLSNCLLNSWTQIVKLLKQLPN 187

Query:   350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
             +  L L +NR++        F+ ++E   + N+  ++G  N++    N+K L L ++NL 
Sbjct:   188 LNRLHLCNNRLS--------FN-IDEFKKEVNSNNEYG--NSIDDC-NVKDLILVNSNLS 235

Query:   410 N 410
             N
Sbjct:   236 N 236

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|B7Z3P1 TBCE "cDNA FLJ59210, highly similar to Tubulin-specific chaperone E" [Homo sapiens (taxid:9606)]

 Score = 250 (93.1 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 75/229 (32%), Positives = 112/229 (48%)

Query:   183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTS 242
             D IG RV +  G   T+R+ G V    G W G++WD+  RGKHDGSH G  YF     T 
Sbjct:     8 DVIGRRV-EVNGEHATVRFAGVVPPVAGPWLGVEWDNPERGKHDGSHEGTVYFKCRHPTG 66

Query:   243 GSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ 302
             GSF+R +K+NFG+ F+ A+  +YV  D     R+  E++    N P +E +GFD + ++Q
Sbjct:    67 GSFIRPNKVNFGTDFLTAIKNRYVLEDGPEEDRK--EQIVTIGNKP-VETIGFDSIMKQQ 123

Query:   303 NT-NKLP---IPN-------DTSGVMEQIFPQGHIHTLTLG-NMGYIWADILKL------ 344
             +  +KL    + N       +  GV E   P  +I  + L  N+   W +++ +      
Sbjct:   124 SQLSKLQEVSLRNCAVSCAGEKGGVAEAC-P--NIRKVDLSKNLLSSWDEVIHIADQLRH 180

Query:   345 --LANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNA 391
               + N     LK PS  + T     G  S L+ L L +  I  W E +A
Sbjct:   181 LEVLNVSENKLKFPSGSVLT-----GTLSVLKVLVLNQTGIT-WAEAHA 223

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	421
smart01052	68	smart01052, CAP_GLY, Cytoskeleton-associated prote	4e-21
pfam01302	67	pfam01302, CAP_GLY, CAP-Gly domain	8e-21
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
COG5244	669	COG5244, NIP100, Dynactin complex subunit involved	7e-06
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-06

>gnl|CDD|214997 smart01052, CAP_GLY, Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network

 Score = 86.1 bits (214), Expect = 4e-21
 Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           +G RV     G RGT+RYVG      GVW G++ D   RGK+DGS  GV+YF       G
Sbjct: 1   VGDRVEVGGGGRRGTVRYVGPTPFAPGVWVGVELDEPLRGKNDGSVKGVRYF-ECPPKHG 59

Query: 244 SFMRRDKL 251
            F+R  K+
Sbjct: 60  IFVRPSKV 67

A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 68

>gnl|CDD|216424 pfam01302, CAP_GLY, CAP-Gly domain

 Score = 85.3 bits (212), Expect = 8e-21
 Identities = 31/68 (45%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           +G RV     G RGT+RYVG V    G+W G++ D E RGK+DGS +GV+YF       G
Sbjct: 1   VGDRVEVLGGGRRGTVRYVGPVPFAPGLWVGVELD-EPRGKNDGSVDGVRYFECPP-KYG 58

Query: 244 SFMRRDKL 251
            F+R  K+
Sbjct: 59  IFVRPSKV 66

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including CLIP-170 and dynactins. The crystal structure of Caenorhabditis elegans F53F4.3 protein CAP-Gly domain was recently solved. The domain contains three beta-strands. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Length = 67

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 43.7 bits (104), Expect = 4e-06
 Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 10/64 (15%)

Query: 350 VTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLA 404
           +  L L +NR+T +    G F    +L+ L L  NN+  +      A   LP+L+ L+L+
Sbjct: 2   LKSLDLSNNRLTVIP--DGAFKGLPNLKVLDLSGNNLTSISP---EAFSGLPSLRSLDLS 56

Query: 405 STNL 408
             NL
Sbjct: 57  GNNL 60

Length = 60

>gnl|CDD|227569 COG5244, NIP100, Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

 Score = 47.8 bits (113), Expect = 7e-06
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 194 GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN 252
              GT+R++G  +   G+W G++ D +  GK+DGS NGV+YF       G F+R D  +
Sbjct: 14  DKFGTVRFIGKTKFKDGIWIGLELD-DPVGKNDGSVNGVRYFHCKKRH-GIFIRPDDDS 70

Length = 669

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           +LE L L  N I D   +  L +LPNL+ L+L+   + ++ 
Sbjct: 2   NLETLDLSNNQITD---LPPLSNLPNLETLDLSGNKITDLS 39

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	421
KOG3207|consensus	505		99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.85
KOG2982|consensus	418		99.78
KOG4194|consensus	873		99.77
KOG0444|consensus	1255		99.7
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.67
KOG0472|consensus	565		99.66
KOG3207|consensus	505		99.66
KOG4194|consensus	873		99.65
KOG0444|consensus	1255		99.62
KOG0618|consensus	1081		99.59
KOG0472|consensus	565		99.49
KOG1644|consensus	233		99.37
KOG4237|consensus	498		99.31
PF01302	69	CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytos	99.28
KOG0618|consensus	1081		99.26
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.21
KOG3206|consensus	234		99.1
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.99
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.97
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.94
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.92
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.82
KOG4237|consensus	498		98.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.71
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.68
KOG0617|consensus	264		98.65
KOG2123|consensus	388		98.63
KOG0617|consensus	264		98.63
COG5244	669	NIP100 Dynactin complex subunit involved in mitoti	98.62
KOG2739|consensus	260		98.49
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.4
PLN03150	623	hypothetical protein; Provisional	98.39
KOG2982|consensus	418		98.35
PLN03150	623	hypothetical protein; Provisional	98.31
KOG1259|consensus	490		98.31
KOG0971|consensus	1243		98.22
KOG1259|consensus	490		98.2
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.98
KOG1644|consensus	233		97.95
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG4579|consensus	177		97.76
KOG4579|consensus	177		97.72
KOG1909|consensus	382		97.68
KOG0531|consensus	414		97.59
KOG1859|consensus	1096		97.55
KOG1859|consensus	1096		97.53
KOG1909|consensus	382		97.52
KOG4568|consensus	664		97.51
KOG3665|consensus	699		97.42
KOG2123|consensus	388		97.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.3
KOG0531|consensus	414		97.01
KOG2120|consensus	419		96.99
KOG2739|consensus	260		96.97
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.96
KOG0532|consensus	722		96.95
KOG3763|consensus	585		96.93
KOG0532|consensus	722		96.63
KOG4658|consensus	889		96.59
KOG3556|consensus	724		96.51
KOG3665|consensus	699		96.39
KOG2120|consensus	419		96.36
KOG4658|consensus	889		95.76
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	95.67
KOG3763|consensus	585		93.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.73
KOG0241|consensus	1714		93.09
KOG4568|consensus	664		92.89
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.82
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	91.12
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	90.79
PRK15386	426	type III secretion protein GogB; Provisional	90.49
smart00370	26	LRR Leucine-rich repeats, outliers.	89.29
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	89.29
PRK15386	426	type III secretion protein GogB; Provisional	89.1
KOG1947|consensus	482		88.36
KOG4308|consensus	478		87.94
smart00446	26	LRRcap occurring C-terminal to leucine-rich repeat	87.68
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	87.53
smart00370	26	LRR Leucine-rich repeats, outliers.	87.53
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.99
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	83.83
KOG0473|consensus	326		83.79
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	83.2
KOG1947|consensus	482		82.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	81.34
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.11

>KOG3207|consensus

Probab=99.97  E-value=7e-31  Score=248.76  Aligned_cols=228  Identities=32%  Similarity=0.627  Sum_probs=189.9

Q ss_pred             cCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHHh
Q psy9363         182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEAL  261 (421)
Q Consensus       182 ~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~al  261 (421)
                      .+.+|.|+. +++.++|+||+|.|+++.|.|+||||||..||||+|.++|.+||+|..|+.|||+++.++..+.++..++
T Consensus         2 ~~~IG~Rvk-I~~~~~Tvr~iG~V~g~~~~w~GvEWDd~~RGKH~G~vdgk~YF~~q~P~GGSFik~~kV~~p~d~~~t~   80 (505)
T KOG3207|consen    2 TMEIGTRVK-IGGEIATVRYIGEVEGNNSKWYGVEWDDPVRGKHDGIVDGKRYFQTQHPNGGSFIKPGKVKFPTDLLRTF   80 (505)
T ss_pred             ceeccceEE-EcCEEEEEEEEEEEcCCCCcceeeEecCCCccccCceecceeeeeeecCCCccccCCccCCCCccHHHHH
Confidence            356899998 9999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             hhhhccccchhhhccccceeeeeecCceeEeecccchhhhh----CCCccCCCC---CCCc--hhhhcCCCCCccEEEee
Q psy9363         262 HRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ----NTNKLPIPN---DTSG--VMEQIFPQGHIHTLTLG  332 (421)
Q Consensus       262 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~----~L~~l~l~~---~~~~--~~~~~l~~~~L~~L~Ls  332 (421)
                      .++|......    +.+....+.++++.+|.+||+++..++    +|+.+.|.+   +..+  .....|  ++++.||||
T Consensus        81 ~ery~e~~s~----~sd~~~~~si~nK~vE~iGfDki~akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~--~~v~~LdLS  154 (505)
T KOG3207|consen   81 KERYYEKYSY----SSDLESVLSISNKQVEFIGFDKIAAKQSNLKKLREISLDNYRVEDAGIEEYSKIL--PNVRDLDLS  154 (505)
T ss_pred             HHHHHHhhcC----CcchhhHhhhcCceeEEecHHHHHHHhhhHHhhhheeecCccccccchhhhhhhC--Ccceeecch
Confidence            9999877542    222233456889999999999999888    566667776   3333  467889  999999999


Q ss_pred             Ccccc-hhhHHHHhccCCC-cEEEccCCcCcc-cCCC-------------------------------------------
Q psy9363         333 NMGYI-WADILKLLANFPV-TCLKLPSNRITT-LDSV-------------------------------------------  366 (421)
Q Consensus       333 ~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~-------------------------------------------  366 (421)
                      .|.|+ |..+.+++..+|+ +.|+|+.|++.- ....                                           
T Consensus       155 ~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~  234 (505)
T KOG3207|consen  155 RNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEI  234 (505)
T ss_pred             hhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccc
Confidence            99999 9999999999999 999999999962 1000                                           


Q ss_pred             -------CCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCCC
Q psy9363         367 -------PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE  416 (421)
Q Consensus       367 -------~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~~  416 (421)
                             ...+..|++|||++|++-+.+....++.+|.|..|+++.+.+++|..|+.
T Consensus       235 ~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~  291 (505)
T KOG3207|consen  235 ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDV  291 (505)
T ss_pred             cceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCc
Confidence                   02244567777777777776666677788888888888888888888876

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=5.1e-22  Score=219.76  Aligned_cols=374  Identities=13%  Similarity=0.099  Sum_probs=193.4

Q ss_pred             CCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchh
Q psy9363           9 GKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFV   87 (421)
Q Consensus         9 g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~   87 (421)
                      |..|..+. .+++|++|+|++|.++  +.+|..++++++|++|+| .|++. +.+|..++.+++|++|+|++|.+.+..+
T Consensus       202 ~~~p~~l~-~l~~L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p  277 (968)
T PLN00113        202 GQIPRELG-QMKSLKWIYLGYNNLS--GEIPYEIGGLTSLNHLDLVYNNLT-GPIPSSLGNLKNLQYLFLYQNKLSGPIP  277 (968)
T ss_pred             CcCChHHc-CcCCccEEECcCCccC--CcCChhHhcCCCCCEEECcCceec-cccChhHhCCCCCCEEECcCCeeeccCc
Confidence            33455555 4678888888888887  566777778888888888 47776 4667667777788888887665544433


Q ss_pred             hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccch-h---hHH
Q psy9363          88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLD-E---KRR  163 (421)
Q Consensus        88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~-~---~~~  163 (421)
                      ..   +..+++|++|++++|.+...      .+..++.+++|+.|+++...........+.-+..+...... +   ...
T Consensus       278 ~~---l~~l~~L~~L~Ls~n~l~~~------~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  348 (968)
T PLN00113        278 PS---IFSLQKLISLDLSDNSLSGE------IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEI  348 (968)
T ss_pred             hh---HhhccCcCEEECcCCeeccC------CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcC
Confidence            22   44567777777777766322      33445566666666655322211111111111000000000 0   000


Q ss_pred             HHHHHhCC-----CCCCcccccccCCCCceEEee-cCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEec
Q psy9363         164 AEFLEANP-----RVGDNYFQVMEDDIGLRVCDS-EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWT  237 (421)
Q Consensus       164 ~~~~~~~~-----~~~~n~~~~~~~~i~~rv~~l-~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~  237 (421)
                      .......+     ....|.+.+...........+ ...+..+++.|.+|...+.+..++..++..++..|..        
T Consensus       349 p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--------  420 (968)
T PLN00113        349 PKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--------  420 (968)
T ss_pred             ChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--------
Confidence            00000000     111122211110000000000 0123333444444433332222222222222221111        


Q ss_pred             CCCCceeEEecCcccc-CchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC----C
Q psy9363         238 HSTTSGSFMRRDKLNF-GSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----D  312 (421)
Q Consensus       238 ~~~~~gsf~~~~~l~~-g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~  312 (421)
                       +...+.+..+..+.. +..+...+...         +........+.++.+.+... +.......+|+.+++++    +
T Consensus       421 -p~~~~~l~~L~~L~Ls~N~l~~~~~~~---------~~~l~~L~~L~L~~n~~~~~-~p~~~~~~~L~~L~ls~n~l~~  489 (968)
T PLN00113        421 -PSEFTKLPLVYFLDISNNNLQGRINSR---------KWDMPSLQMLSLARNKFFGG-LPDSFGSKRLENLDLSRNQFSG  489 (968)
T ss_pred             -ChhHhcCCCCCEEECcCCcccCccChh---------hccCCCCcEEECcCceeeee-cCcccccccceEEECcCCccCC
Confidence             100011111111110 01111000000         01112233333443322111 00010111556666654    6


Q ss_pred             CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      .+|..+..+  ++|+.|+|++|.+. +.++..+..+++ ++|+|++|.+++ +|..+..+++|+.|+|++|++ ....+.
T Consensus       490 ~~~~~~~~l--~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l-~~~~p~  565 (968)
T PLN00113        490 AVPRKLGSL--SELMQLKLSENKLS-GEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQL-SGEIPK  565 (968)
T ss_pred             ccChhhhhh--hccCEEECcCCcce-eeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcc-cccCCh
Confidence            778888899  99999999999998 455567778889 999999999995 565568899999999999999 444567


Q ss_pred             ccCccccccccccccccCcccCCCCCCCC
Q psy9363         391 ALGSLPNLKYLNLASTNLRNIKLNKEGHY  419 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~i~~p~~~~~  419 (421)
                      .+..++.|+.|++++|++.+ .+|+.+.|
T Consensus       566 ~l~~l~~L~~l~ls~N~l~~-~~p~~~~~  593 (968)
T PLN00113        566 NLGNVESLVQVNISHNHLHG-SLPSTGAF  593 (968)
T ss_pred             hHhcCcccCEEeccCCccee-eCCCcchh
Confidence            88899999999999999997 77766554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.85  E-value=1e-21  Score=217.37  Aligned_cols=104  Identities=20%  Similarity=0.208  Sum_probs=66.9

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L  376 (421)
                      .|+.+++++    +.++..+..+  ++|+.|+|++|.+. +.++... ..++ +.|+|++|++++ +|..+..+++|+.|
T Consensus       429 ~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~~~-~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L  504 (968)
T PLN00113        429 LVYFLDISNNNLQGRINSRKWDM--PSLQMLSLARNKFF-GGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQL  504 (968)
T ss_pred             CCCEEECcCCcccCccChhhccC--CCCcEEECcCceee-eecCccc-ccccceEEECcCCccCCccChhhhhhhccCEE
Confidence            444444443    4445555566  66777777777665 2222222 2345 777777777763 44444677888888


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      +|++|++.. ..+..++.+++|+.|+|++|.+++.
T Consensus       505 ~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~~~  538 (968)
T PLN00113        505 KLSENKLSG-EIPDELSSCKKLVSLDLSHNQLSGQ  538 (968)
T ss_pred             ECcCCccee-eCChHHcCccCCCEEECCCCccccc
Confidence            888888843 3356778888888888888888873

>KOG2982|consensus

Probab=99.78  E-value=1.8e-19  Score=163.91  Aligned_cols=171  Identities=29%  Similarity=0.359  Sum_probs=136.2

Q ss_pred             CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCC--CCCcc-------------
Q psy9363           2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSS--SAPAH-------------   65 (421)
Q Consensus         2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~--~~p~~-------------   65 (421)
                      ++.|..+| +...++..|+.+++|||.+|+||+|.+|..++.+||.|++|+|+ |.+.+.  ..|..             
T Consensus        54 ~~~id~~g-d~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~  132 (418)
T KOG2982|consen   54 GSIIDNEG-DVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG  132 (418)
T ss_pred             CCCCCcch-hHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence            67889999 88999999999999999999999999999999999999999995 988741  22311             


Q ss_pred             ---------cccccccchhccccc-----------cCC------------------------------------------
Q psy9363          66 ---------SYLAEVVFFVHLGRT-----------LCD------------------------------------------   83 (421)
Q Consensus        66 ---------~~~~~~L~~L~L~~~-----------~~~------------------------------------------   83 (421)
                               ...++.++.|+++.|           ...                                          
T Consensus       133 L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK  212 (418)
T KOG2982|consen  133 LSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLK  212 (418)
T ss_pred             CChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCccc
Confidence                     123344555555422           000                                          


Q ss_pred             ------------------------cchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363          84 ------------------------EDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        84 ------------------------~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                                              ++|..++. +.+||.|+.|++++||+.+...-++.|...|||++++++||+++|+.
T Consensus       213 ~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGskIss  291 (418)
T KOG2982|consen  213 TESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGSKISS  291 (418)
T ss_pred             chhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCcccch
Confidence                                    11334444 99999999999999999988777778889999999999999999999


Q ss_pred             hhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363         140 QERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG  174 (421)
Q Consensus       140 ~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (421)
                      +||.++|++|.|.|+.+-.....+.++...|+++-
T Consensus       292 ~er~dSEr~fVRyym~qke~p~ky~el~~~Hg~l~  326 (418)
T KOG2982|consen  292 RERKDSERRFVRYYMSQKELPDKYGELELLHGRLY  326 (418)
T ss_pred             hhhhhhHHHHHHHHhhhhhcchhhhhHHHHccchh
Confidence            99999999999999875433456677777787773

>KOG4194|consensus

Probab=99.77  E-value=8.8e-20  Score=178.82  Aligned_cols=338  Identities=19%  Similarity=0.200  Sum_probs=193.0

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      .-+.||+|+|.|+.|+  +..+.++|+|+.+++ .|.++  .+|.+.+...+|+.|+|.+|+++.--.+.   +..+|.|
T Consensus        79 ~t~~LdlsnNkl~~id--~~~f~nl~nLq~v~l~~N~Lt--~IP~f~~~sghl~~L~L~~N~I~sv~se~---L~~l~al  151 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHID--FEFFYNLPNLQEVNLNKNELT--RIPRFGHESGHLEKLDLRHNLISSVTSEE---LSALPAL  151 (873)
T ss_pred             ceeeeeccccccccCc--HHHHhcCCcceeeeeccchhh--hcccccccccceeEEeeeccccccccHHH---HHhHhhh
Confidence            4567999999999886  556789999999999 58888  68888878788999999998884322222   7789999


Q ss_pred             ceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCcccc
Q psy9363         100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQ  179 (421)
Q Consensus       100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~  179 (421)
                      ++|||+.|.|+..      +...+.+-.+++.||++....-..+......+..+-               ..+.+.|.++
T Consensus       152 rslDLSrN~is~i------~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~---------------tlkLsrNrit  210 (873)
T KOG4194|consen  152 RSLDLSRNLISEI------PKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLL---------------TLKLSRNRIT  210 (873)
T ss_pred             hhhhhhhchhhcc------cCCCCCCCCCceEEeeccccccccccccccccchhe---------------eeecccCccc
Confidence            9999999998544      334455666789999885433222212211121110               0122223332


Q ss_pred             cccCCCCce---EEeecCceeEEEEe-cccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCc
Q psy9363         180 VMEDDIGLR---VCDSEGHRGTIRYV-GSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS  255 (421)
Q Consensus       180 ~~~~~i~~r---v~~l~~~~~~~r~~-G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~  255 (421)
                      -....+..|   +..++..+..+|.+ |.- . .| .-.++-..+.|++-. -+++-.||.+.        +++.+....
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~lt-F-qg-L~Sl~nlklqrN~I~-kL~DG~Fy~l~--------kme~l~L~~  278 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-F-QG-LPSLQNLKLQRNDIS-KLDDGAFYGLE--------KMEHLNLET  278 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhh-h-cC-chhhhhhhhhhcCcc-cccCcceeeec--------ccceeeccc
Confidence            221111122   22223344444443 111 0 00 000111111222110 01111222221        111111111


Q ss_pred             hhHHHhhh--hhccccchhhhccccceeeeeecCceeEe---ecccchhhhhCCCccCCCC----CCCchhhhcCCCCCc
Q psy9363         256 SFMEALHR--KYVETDNELTVRENVEEVKASINAPFLEL---VGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHI  326 (421)
Q Consensus       256 ~~~~al~~--~y~~~~~~~~~~~~~~~~~~~~~~~~~e~---~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L  326 (421)
                      .-.+++.+  .|+...          ++.+.++-+.++-   -+|+..   +.|+.++|+.    .-.+..+..+  ..|
T Consensus       279 N~l~~vn~g~lfgLt~----------L~~L~lS~NaI~rih~d~Wsft---qkL~~LdLs~N~i~~l~~~sf~~L--~~L  343 (873)
T KOG4194|consen  279 NRLQAVNEGWLFGLTS----------LEQLDLSYNAIQRIHIDSWSFT---QKLKELDLSSNRITRLDEGSFRVL--SQL  343 (873)
T ss_pred             chhhhhhcccccccch----------hhhhccchhhhheeecchhhhc---ccceeEeccccccccCChhHHHHH--HHh
Confidence            11112111  122221          1222233222222   233332   2455555543    3445667888  888


Q ss_pred             cEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcc-cCCCC---CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         327 HTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITT-LDSVP---GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       327 ~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      ++|.|++|.++ ..+  ..+..+.+ ++|+|++|.|+. |+...   ..++.|+.|.|.+|+|..++ -.++..+++|++
T Consensus       344 e~LnLs~Nsi~~l~e--~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~-krAfsgl~~LE~  420 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAE--GAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP-KRAFSGLEALEH  420 (873)
T ss_pred             hhhcccccchHHHHh--hHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc-hhhhccCcccce
Confidence            89999999988 333  44566777 899999999983 44432   66899999999999998876 568899999999


Q ss_pred             cccccccCcccCCCCC
Q psy9363         401 LNLASTNLRNIKLNKE  416 (421)
Q Consensus       401 L~Ls~N~l~~i~~p~~  416 (421)
                      |||.+|.|..|.+.+.
T Consensus       421 LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  421 LDLGDNAIASIQPNAF  436 (873)
T ss_pred             ecCCCCcceeeccccc
Confidence            9999999998877654

>KOG0444|consensus

Probab=99.70  E-value=7.9e-19  Score=173.27  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNA  391 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  391 (421)
                      .+|..+..+  .+|..+|||+|.+.  .+|.++..+++ +.|+||+|+|+++....+.+.+|++|+||+|+++.+  |..
T Consensus       213 N~Ptsld~l--~NL~dvDlS~N~Lp--~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~L--P~a  286 (1255)
T KOG0444|consen  213 NIPTSLDDL--HNLRDVDLSENNLP--IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVL--PDA  286 (1255)
T ss_pred             cCCCchhhh--hhhhhccccccCCC--cchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccc--hHH
Confidence            344445555  55555555555553  33445555555 555555555555444344455555555555555443  234


Q ss_pred             cCccccccccccccccCcccCCC
Q psy9363         392 LGSLPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       392 l~~l~~L~~L~Ls~N~l~~i~~p  414 (421)
                      ++.++.|+.|.+.+|+++---+|
T Consensus       287 vcKL~kL~kLy~n~NkL~FeGiP  309 (1255)
T KOG0444|consen  287 VCKLTKLTKLYANNNKLTFEGIP  309 (1255)
T ss_pred             HhhhHHHHHHHhccCcccccCCc
Confidence            55555555555555555443444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.67  E-value=2.1e-17  Score=144.21  Aligned_cols=130  Identities=25%  Similarity=0.291  Sum_probs=67.8

Q ss_pred             HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCccc-ccccccchhccccccCCcchhhHHH
Q psy9363          14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHS-YLAEVVFFVHLGRTLCDEDFVKEGS   91 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~-~~~~~L~~L~L~~~~~~~~~~~~~~   91 (421)
                      .+...+.+|+.||||+|.|++++.++.    |++|+.|++ +|+++.  ++... ..+++|++|+|++|.+ .++.++..
T Consensus        36 ~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~  108 (175)
T PF14580_consen   36 NLGATLDKLEVLDLSNNQITKLEGLPG----LPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYLSNNKI-SDLNELEP  108 (175)
T ss_dssp             S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS----SCCCCGG
T ss_pred             chhhhhcCCCEEECCCCCCccccCccC----hhhhhhcccCCCCCCc--cccchHHhCCcCCEEECcCCcC-CChHHhHH
Confidence            345567899999999999998877665    899999999 599984  43322 3689999999988877 33445555


Q ss_pred             HHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhc
Q psy9363          92 LLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFG  154 (421)
Q Consensus        92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~  154 (421)
                       +..+|+|++|+|.+||++..   ..||.++|+.+|+|++||+..|+++||+.|+..|-...+
T Consensus       109 -L~~l~~L~~L~L~~NPv~~~---~~YR~~vi~~lP~Lk~LD~~~V~~~ER~~A~~~f~~~~~  167 (175)
T PF14580_consen  109 -LSSLPKLRVLSLEGNPVCEK---KNYRLFVIYKLPSLKVLDGQDVTEEERQEAEKLFKGKRA  167 (175)
T ss_dssp             -GGG-TT--EEE-TT-GGGGS---TTHHHHHHHH-TT-SEETTEETTS-B-------------
T ss_pred             -HHcCCCcceeeccCCcccch---hhHHHHHHHHcChhheeCCEEccHHHhcccccccccccc
Confidence             78899999999999999765   699999999999999999999999999999988876544

>KOG0472|consensus

Probab=99.66  E-value=2.4e-18  Score=162.24  Aligned_cols=101  Identities=22%  Similarity=0.255  Sum_probs=83.4

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~  377 (421)
                      +|..+++++   .++|..++.+  ..|+.|++|+|+|.  .+|+++..+.. +.+-.++|++..+++. ++.|.+|+.||
T Consensus       436 kLt~L~L~NN~Ln~LP~e~~~l--v~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLD  511 (565)
T KOG0472|consen  436 KLTFLDLSNNLLNDLPEEMGSL--VRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLD  511 (565)
T ss_pred             cceeeecccchhhhcchhhhhh--hhhheecccccccc--cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceec
Confidence            777777877   7788888888  88999999999886  44566655444 6666677999888876 58999999999


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      |.+|.|..+  |..++++.+|++|++++|+++
T Consensus       512 L~nNdlq~I--Pp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  512 LQNNDLQQI--PPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             cCCCchhhC--ChhhccccceeEEEecCCccC
Confidence            999999885  458999999999999999998

>KOG3207|consensus

Probab=99.66  E-value=7.8e-17  Score=153.70  Aligned_cols=153  Identities=32%  Similarity=0.420  Sum_probs=110.5

Q ss_pred             CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcc---------------
Q psy9363           2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAH---------------   65 (421)
Q Consensus         2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~---------------   65 (421)
                      +++|.++|+.  +..+.|++++.||||.|+|+.|..|..++++||+|+.|+| +|+|.. ...+.               
T Consensus       130 n~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~-~~~s~~~~~l~~lK~L~l~~  206 (505)
T KOG3207|consen  130 NYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN-FISSNTTLLLSHLKQLVLNS  206 (505)
T ss_pred             Cccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC-CccccchhhhhhhheEEecc
Confidence            5789999943  6778999999999999999999999999999999999999 599973 11110               


Q ss_pred             -----------cccccccc------------------------hhccccc-cCCcc-------hh---------------
Q psy9363          66 -----------SYLAEVVF------------------------FVHLGRT-LCDED-------FV---------------   87 (421)
Q Consensus        66 -----------~~~~~~L~------------------------~L~L~~~-~~~~~-------~~---------------   87 (421)
                                 ...|++|.                        .|+|++| +++-+       ++               
T Consensus       207 CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  207 CGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASI  286 (505)
T ss_pred             CCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchh
Confidence                       01233444                        4444322 11111       11               


Q ss_pred             -----hHHHHHhhCCCCceeeecCCCCCCcccc-----------------------chhHHHHHHhccCceeccCCccCh
Q psy9363          88 -----KEGSLLHYLPKLSSLRFTKNPILAEERV-----------------------VSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        88 -----~~~~ll~~l~~L~~L~l~~N~l~~~~~~-----------------------~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                           ++......+|+|++|.+.+|++.+..+.                       ..++..+||++++|..||...|.+
T Consensus       287 ~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p  366 (505)
T KOG3207|consen  287 AEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKETDTAKLLVIARISQLVKLNDVDISP  366 (505)
T ss_pred             cCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccccccceeEEeeeehhhhhhhcccccCh
Confidence                 1111156799999999999998444321                       123345899999999999999999


Q ss_pred             hhhhccHHHHHHh-hcccc
Q psy9363         140 QERQGSEYDYIKE-FGAVW  157 (421)
Q Consensus       140 ~~r~~ae~~~l~~-~~~~~  157 (421)
                      .||++||++|++. ++.+|
T Consensus       367 ~eRR~AEl~~~~~~~~ne~  385 (505)
T KOG3207|consen  367 NERRDAELYYLSKIFDNEI  385 (505)
T ss_pred             HHhhhhhhhHHhhhhhhhh
Confidence            9999999999988 55444

>KOG4194|consensus

Probab=99.65  E-value=4.7e-17  Score=159.89  Aligned_cols=121  Identities=18%  Similarity=0.243  Sum_probs=90.7

Q ss_pred             eeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccch--hhHHHHhccCCC-cEE
Q psy9363         281 VKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIW--ADILKLLANFPV-TCL  353 (421)
Q Consensus       281 ~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~--~~i~~~~~~l~~-~~L  353 (421)
                      +.+.++.+.+....-..+....+|+.+.|++    ..-...|..+  ++|+.|||++|.|+|  ++....+..+|+ +.|
T Consensus       320 ~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l--ssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  320 KELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL--SSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             eeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh--hhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            3344555555544444444334677777765    2223458889  999999999999994  344455677999 999


Q ss_pred             EccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccccccc
Q psy9363         354 KLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAS  405 (421)
Q Consensus       354 ~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~  405 (421)
                      +|-+|+|+.|+... ..++.|++|||.+|.|.++. +.+|..+ .|++|.++.
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq-~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ-PNAFEPM-ELKELVMNS  448 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeec-ccccccc-hhhhhhhcc
Confidence            99999999998654 88999999999999999887 7788888 888887654

>KOG0444|consensus

Probab=99.62  E-value=1.8e-17  Score=163.74  Aligned_cols=97  Identities=24%  Similarity=0.274  Sum_probs=78.9

Q ss_pred             CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCc-ccccccccchhcccc
Q psy9363           2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPA-HSYLAEVVFFVHLGR   79 (421)
Q Consensus         2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~-~~~~~~~L~~L~L~~   79 (421)
                      +++++++| +|.+|.. +.-|+.||||+|+++   ++|..+..-+++-+|+|| |++..  ||. ...+++-|-+|||++
T Consensus        87 ~N~LKnsG-iP~diF~-l~dLt~lDLShNqL~---EvP~~LE~AKn~iVLNLS~N~Iet--IPn~lfinLtDLLfLDLS~  159 (1255)
T KOG0444|consen   87 DNNLKNSG-IPTDIFR-LKDLTILDLSHNQLR---EVPTNLEYAKNSIVLNLSYNNIET--IPNSLFINLTDLLFLDLSN  159 (1255)
T ss_pred             ccccccCC-CCchhcc-cccceeeecchhhhh---hcchhhhhhcCcEEEEcccCcccc--CCchHHHhhHhHhhhcccc
Confidence            46788999 9999985 689999999999997   788888889999999995 88884  443 234667788999999


Q ss_pred             ccCCcchhhHHHHHhhCCCCceeeecCCCC
Q psy9363          80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPI  109 (421)
Q Consensus        80 ~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l  109 (421)
                      |.+.--++.    .+++..|++|.|++||+
T Consensus       160 NrLe~LPPQ----~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  160 NRLEMLPPQ----IRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             chhhhcCHH----HHHHhhhhhhhcCCChh
Confidence            988444555    45689999999999998

>KOG0618|consensus

Probab=99.59  E-value=8.6e-17  Score=165.44  Aligned_cols=372  Identities=18%  Similarity=0.155  Sum_probs=195.7

Q ss_pred             ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363          11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE   89 (421)
Q Consensus        11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~   89 (421)
                      .|-+..+.|-+|+.||||+|+++++   |..+..+++|+.|++ +|.+.  ..|.......+|++|.|.+|...-.+..+
T Consensus        36 ~pl~~~~~~v~L~~l~lsnn~~~~f---p~~it~l~~L~~ln~s~n~i~--~vp~s~~~~~~l~~lnL~~n~l~~lP~~~  110 (1081)
T KOG0618|consen   36 RPLEFVEKRVKLKSLDLSNNQISSF---PIQITLLSHLRQLNLSRNYIR--SVPSSCSNMRNLQYLNLKNNRLQSLPASI  110 (1081)
T ss_pred             CchHHhhheeeeEEeeccccccccC---CchhhhHHHHhhcccchhhHh--hCchhhhhhhcchhheeccchhhcCchhH
Confidence            3456666777899999999999976   444566889999999 58887  46777788899999999988875555554


Q ss_pred             HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHH----HHHhh---ccccchhhH
Q psy9363          90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYD----YIKEF---GAVWLDEKR  162 (421)
Q Consensus        90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~----~l~~~---~~~~~~~~~  162 (421)
                          ..+.+|++|+++.|.+...       |.+|-.+..+..++.+.. .+..+-.+..    +++..   +.+..+   
T Consensus       111 ----~~lknl~~LdlS~N~f~~~-------Pl~i~~lt~~~~~~~s~N-~~~~~lg~~~ik~~~l~~n~l~~~~~~~---  175 (1081)
T KOG0618|consen  111 ----SELKNLQYLDLSFNHFGPI-------PLVIEVLTAEEELAASNN-EKIQRLGQTSIKKLDLRLNVLGGSFLID---  175 (1081)
T ss_pred             ----HhhhcccccccchhccCCC-------chhHHhhhHHHHHhhhcc-hhhhhhccccchhhhhhhhhcccchhcc---
Confidence                4589999999999998543       456666666666665533 1110000000    11100   000000   


Q ss_pred             HHHHHHhCCCCCCcccccccCCCCceEEe--e-cCceeEEEEecccCCCCC--cEEEEEecCCCCCCCCCeeCCEEeEec
Q psy9363         163 RAEFLEANPRVGDNYFQVMEDDIGLRVCD--S-EGHRGTIRYVGSVEGTQG--VWYGIDWDSETRGKHDGSHNGVKYFWT  237 (421)
Q Consensus       163 ~~~~~~~~~~~~~n~~~~~~~~i~~rv~~--l-~~~~~~~r~~G~ip~~~g--~~~gle~d~~~~g~~~G~~~g~~~f~~  237 (421)
                      ... ........+|.+...+......+..  + ...+....++|+--.+.-  ...-..      -...+..+..+|+.-
T Consensus       176 i~~-l~~~ldLr~N~~~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~------~~~~p~p~nl~~~di  248 (1081)
T KOG0618|consen  176 IYN-LTHQLDLRYNEMEVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTT------LDVHPVPLNLQYLDI  248 (1081)
T ss_pred             hhh-hheeeecccchhhhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCccee------eccccccccceeeec
Confidence            000 0001122223333111111111110  1 124555555555432210  000000      011112222233321


Q ss_pred             C-------CCCceeEEecCccccCchhHHHhhhhhccccchh-------------hh-ccccceeeeeecCceeEeec--
Q psy9363         238 H-------STTSGSFMRRDKLNFGSSFMEALHRKYVETDNEL-------------TV-RENVEEVKASINAPFLELVG--  294 (421)
Q Consensus       238 ~-------~~~~gsf~~~~~l~~g~~~~~al~~~y~~~~~~~-------------~~-~~~~~~~~~~~~~~~~e~~g--  294 (421)
                      .       +.-.+..+.++.+..+.+...++..+.......-             .+ .......++.+.++.+-...  
T Consensus       249 s~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~  328 (1081)
T KOG0618|consen  249 SHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDN  328 (1081)
T ss_pred             chhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchH
Confidence            1       1122334444555444333344433322111000             00 00111111211111100000  


Q ss_pred             c-cchhh--------------------hh--CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhc
Q psy9363         295 F-DQVHE--------------------EQ--NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLA  346 (421)
Q Consensus       295 ~-~~l~~--------------------~~--~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~  346 (421)
                      + .....                    ..  .|+.+.+++    +..=+.+..+  ++|+.|+|++|++. +++  ..+.
T Consensus       329 ~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~--~hLKVLhLsyNrL~~fpa--s~~~  404 (1081)
T KOG0618|consen  329 FLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNF--KHLKVLHLSYNRLNSFPA--SKLR  404 (1081)
T ss_pred             HHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccc--cceeeeeecccccccCCH--HHHh
Confidence            0 00000                    00  111222322    2222346677  99999999999998 655  6678


Q ss_pred             cCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCCC
Q psy9363         347 NFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE  416 (421)
Q Consensus       347 ~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~~  416 (421)
                      .++. ++|+||+|+++.||..+..+..|++|...+|+|..++   .+..++.|+.+|+|.|+|+.+.+|..
T Consensus       405 kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP---e~~~l~qL~~lDlS~N~L~~~~l~~~  472 (1081)
T KOG0618|consen  405 KLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP---ELAQLPQLKVLDLSCNNLSEVTLPEA  472 (1081)
T ss_pred             chHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech---hhhhcCcceEEecccchhhhhhhhhh
Confidence            8888 9999999999999977777778888888888876654   46677888888888888877766643

>KOG0472|consensus

Probab=99.49  E-value=2e-16  Score=149.46  Aligned_cols=97  Identities=22%  Similarity=0.215  Sum_probs=82.5

Q ss_pred             CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363         312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       312 ~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      +-+|..++.+  ++|+.|+|++|.+.  ++|.-++.+.. +.|+++.|+|..+|..+..+..++.+-.++|++...+ +.
T Consensus       425 sfv~~~l~~l--~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd-~~  499 (565)
T KOG0472|consen  425 SFVPLELSQL--QKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVD-PS  499 (565)
T ss_pred             ccchHHHHhh--hcceeeecccchhh--hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccC-hH
Confidence            5678889999  99999999999998  44556666677 9999999999999976666777888888889998876 66


Q ss_pred             ccCccccccccccccccCcccCC
Q psy9363         391 ALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      .+.++.+|.+|||.+|.+..||+
T Consensus       500 ~l~nm~nL~tLDL~nNdlq~IPp  522 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNNDLQQIPP  522 (565)
T ss_pred             HhhhhhhcceeccCCCchhhCCh
Confidence            79999999999999999997654

>KOG1644|consensus

Probab=99.37  E-value=1.1e-13  Score=120.08  Aligned_cols=126  Identities=21%  Similarity=0.247  Sum_probs=105.0

Q ss_pred             HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHH
Q psy9363          14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSL   92 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~l   92 (421)
                      .++........+||++|.+...+.+|.    +++|.+|.| +|++.. .-|.....+++|+.|.|.+|.+ -.+.++.. 
T Consensus        36 nlg~~~d~~d~iDLtdNdl~~l~~lp~----l~rL~tLll~nNrIt~-I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~p-  108 (233)
T KOG1644|consen   36 NLGATLDQFDAIDLTDNDLRKLDNLPH----LPRLHTLLLNNNRITR-IDPDLDTFLPNLKTLILTNNSI-QELGDLDP-  108 (233)
T ss_pred             hccccccccceecccccchhhcccCCC----ccccceEEecCCccee-eccchhhhccccceEEecCcch-hhhhhcch-
Confidence            345566688999999999997766655    999999999 589984 3344445678899999977655 34556666 


Q ss_pred             HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHH
Q psy9363          93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDY  149 (421)
Q Consensus        93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~  149 (421)
                      ++.||+|++|.+-+||++..   ..||.++++++|+|++||+..|+.+||+.|+-++
T Consensus       109 La~~p~L~~Ltll~Npv~~k---~~YR~yvl~klp~l~~LDF~kVt~~ER~~A~~~f  162 (233)
T KOG1644|consen  109 LASCPKLEYLTLLGNPVEHK---KNYRLYVLYKLPSLRTLDFQKVTRKEREEAEVFF  162 (233)
T ss_pred             hccCCccceeeecCCchhcc---cCceeEEEEecCcceEeehhhhhHHHHHHHHHHh
Confidence            88999999999999999776   5899999999999999999999999999998877

>KOG4237|consensus

Probab=99.31  E-value=2.2e-13  Score=128.83  Aligned_cols=300  Identities=19%  Similarity=0.159  Sum_probs=168.7

Q ss_pred             CccCcCCCChhHHhhhC-CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhcc-cc
Q psy9363           3 SRVSNAGKTHDEIEQAV-PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHL-GR   79 (421)
Q Consensus         3 ~~i~~~g~~~~~~~~~~-~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L-~~   79 (421)
                      +.|.|.|....++-..+ +.-++|+|..|.|++++  +.+++++++|+.|||+ |.++-+. |.....+.+|..|.| ++
T Consensus        49 ~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP--~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~  125 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIP--PGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGN  125 (498)
T ss_pred             ceEEccCCCcccCcccCCCcceEEEeccCCcccCC--hhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcC
Confidence            44555554333443333 36889999999999764  5688999999999995 8888433 333334466666666 55


Q ss_pred             ccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccch
Q psy9363          80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLD  159 (421)
Q Consensus        80 ~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~  159 (421)
                      |.+..-+...   ++.|.+|+-|.+.-|.+      .=.|+.++..+++|..|.+-....              ..+.  
T Consensus       126 NkI~~l~k~~---F~gL~slqrLllNan~i------~Cir~~al~dL~~l~lLslyDn~~--------------q~i~--  180 (498)
T KOG4237|consen  126 NKITDLPKGA---FGGLSSLQRLLLNANHI------NCIRQDALRDLPSLSLLSLYDNKI--------------QSIC--  180 (498)
T ss_pred             CchhhhhhhH---hhhHHHHHHHhcChhhh------cchhHHHHHHhhhcchhcccchhh--------------hhhc--
Confidence            6664444443   77888888888888887      456788888888887665522111              1000  


Q ss_pred             hhHHHHHHHhCCCCCCcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCC
Q psy9363         160 EKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS  239 (421)
Q Consensus       160 ~~~~~~~~~~~~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~  239 (421)
                                +     -.+.+  ...+..+.     .+.+.++.        -..+.|...--....-...|.   .|..
T Consensus       181 ----------~-----~tf~~--l~~i~tlh-----lA~np~ic--------dCnL~wla~~~a~~~ietsga---rc~~  227 (498)
T KOG4237|consen  181 ----------K-----GTFQG--LAAIKTLH-----LAQNPFIC--------DCNLPWLADDLAMNPIETSGA---RCVS  227 (498)
T ss_pred             ----------c-----ccccc--hhccchHh-----hhcCcccc--------ccccchhhhHHhhchhhcccc---eecc
Confidence                      0     00000  00000000     11111100        011222110000011111111   1111


Q ss_pred             CCceeEEecCccccCchh---HHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCC-Cc
Q psy9363         240 TTSGSFMRRDKLNFGSSF---MEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDT-SG  315 (421)
Q Consensus       240 ~~~gsf~~~~~l~~g~~~---~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~-~~  315 (421)
                      +..-..+|...+..+ .|   .+.+.+++...+.                                    ++   .. +.
T Consensus       228 p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~------------------------------------~d---~~cP~  267 (498)
T KOG4237|consen  228 PYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDF------------------------------------PD---SICPA  267 (498)
T ss_pred             hHHHHHHHhcccchh-hhhhhHHhHHHhhccccC------------------------------------cC---CcChH
Confidence            111111111111111 11   1112222222211                                    00   12 23


Q ss_pred             hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccccc
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      ..|..+  ++|+.|+|++|+|+ ..+  ..+..... ++|+|..|+|..+.... ..+.+|+.|+|.+|+|+... +..|
T Consensus       268 ~cf~~L--~~L~~lnlsnN~i~~i~~--~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~-~~aF  342 (498)
T KOG4237|consen  268 KCFKKL--PNLRKLNLSNNKITRIED--GAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA-PGAF  342 (498)
T ss_pred             HHHhhc--ccceEeccCCCccchhhh--hhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe-cccc
Confidence            458899  99999999999998 322  55667777 99999999998776544 78899999999999998776 6688


Q ss_pred             CccccccccccccccC
Q psy9363         393 GSLPNLKYLNLASTNL  408 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l  408 (421)
                      ..+..|.+|+|-.|.+
T Consensus       343 ~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  343 QTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cccceeeeeehccCcc
Confidence            8888999999988876

>PF01302 CAP_GLY: CAP-Gly domain; InterPro: IPR000938 Cytoskeleton-associated proteins (CAP) are made of three distinct parts, an N-terminal section that is most probably globular and contains the CAP-Gly domain, a large central region predicted to be in an alpha-helical coiled-coil conformation and, finally, a short C-terminal globular domain

Probab=99.28  E-value=1.3e-11  Score=90.54  Aligned_cols=64  Identities=42%  Similarity=0.835  Sum_probs=54.3

Q ss_pred             CCceEEee---cCceeEEEEecccC-CCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcc
Q psy9363         185 IGLRVCDS---EGHRGTIRYVGSVE-GTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL  251 (421)
Q Consensus       185 i~~rv~~l---~~~~~~~r~~G~ip-~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l  251 (421)
                      +++||. +   ....+++||+|+++ ...|.|+|||||+. +|+++|+++|.+||.|. +.+|.|++++++
T Consensus         1 VG~rV~-v~~~~~~~G~vryiG~~~~~~~g~~vGVEld~~-~G~~dGt~~G~rYF~c~-~~~G~Fv~~~~v   68 (69)
T PF01302_consen    1 VGDRVR-VDDPGGRRGTVRYIGPVPGFKSGIWVGVELDEP-RGKNDGTVKGKRYFECP-PNHGIFVRPSKV   68 (69)
T ss_dssp             TTSEEE-ESSTTTEEEEEEEEEE-SSSSSSEEEEEEESSS-TSSBSSEETTEESS-SS-TTTEEEEEGGGE
T ss_pred             CCCEEE-EeeCCCCEEEEEEEeeCCCCCCCEEEEEEEcCC-CCCCCcEECCEEEeeeC-CCCEEEecHHHC
Confidence            467877 5   45899999999999 55679999999766 69999999999999996 999999999875

The CAP-Gly domain is a conserved, glycine-rich domain of about 42 residues found in some CAPs []. Proteins known to contain this domain include restin (also known as cytoplasmic linker protein-170 or CLIP-170), a 160 kDa protein associated with intermediate filaments and that links endocytic vesicles to microtubules; vertebrate dynactin (150 kDa dynein-associated polypeptide; DAP) and Drosophila glued, a major component of activator I; yeast protein BIK1, which seems to be required for the formation or stabilisation of microtubules during mitosis and for spindle pole body fusion during conjugation; yeast protein NIP100 (NIP80); human protein CKAP1/TFCB; Schizosaccharomyces pombe protein alp11 and Caenorhabditis elegans hypothetical protein F53F4.3. The latter proteins contain a N-terminal ubiquitin domain and a C-terminal CAP-Gly domain. The crystal structure of the CAP-Gly domain of C. elegans F53F4.3 protein, solved by single wavelength sulphur-anomalous phasing, revealed a novel protein fold containing three beta-sheets. The most conserved sequence, GKNDG, is located in two consecutive sharp turns on the surface, forming the entrance to a groove. Residues in the groove are highly conserved as measured from the information content of the aligned sequences. The C-terminal tail of another molecule in the crystal is bound in this groove []. ; PDB: 2CP6_A 2E4H_A 2E3H_A 3E2U_B 2HL3_B 3TQ7_Q 2HKQ_B 2HQH_A 2HKN_B 2HL5_C ....

>KOG0618|consensus

Probab=99.26  E-value=1.2e-12  Score=135.40  Aligned_cols=81  Identities=21%  Similarity=0.130  Sum_probs=58.9

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      +|+++|+|.|.++   .+|.+++.+++|+.|++ .|+|.  .+|..+...++|+.|....|-+.--++.    +..+..|
T Consensus       242 nl~~~dis~n~l~---~lp~wi~~~~nle~l~~n~N~l~--~lp~ri~~~~~L~~l~~~~nel~yip~~----le~~~sL  312 (1081)
T KOG0618|consen  242 NLQYLDISHNNLS---NLPEWIGACANLEALNANHNRLV--ALPLRISRITSLVSLSAAYNELEYIPPF----LEGLKSL  312 (1081)
T ss_pred             cceeeecchhhhh---cchHHHHhcccceEecccchhHH--hhHHHHhhhhhHHHHHhhhhhhhhCCCc----cccccee
Confidence            5788888888887   34677788888888888 47775  5676666777888888877755332332    4458888


Q ss_pred             ceeeecCCCCC
Q psy9363         100 SSLRFTKNPIL  110 (421)
Q Consensus       100 ~~L~l~~N~l~  110 (421)
                      ++|+|+.|.|.
T Consensus       313 ~tLdL~~N~L~  323 (1081)
T KOG0618|consen  313 RTLDLQSNNLP  323 (1081)
T ss_pred             eeeeehhcccc
Confidence            88888888873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.21  E-value=2e-11  Score=128.99  Aligned_cols=77  Identities=19%  Similarity=0.155  Sum_probs=53.0

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ++|+.|+|++|.|+ ++.      ..+. +.|++++|+|+.+|..   +.+|+.|+|++|+|+.+  +..+..+++|+.|
T Consensus       382 ~~L~~LdLs~N~Lt~LP~------l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~L--P~sl~~L~~L~~L  450 (788)
T PRK15387        382 SGLKELIVSGNRLTSLPV------LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRL--PESLIHLSSETTV  450 (788)
T ss_pred             cccceEEecCCcccCCCC------cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccccc--ChHHhhccCCCeE
Confidence            56777888888877 221      1234 7788888888777642   34677788888888654  3457777788888


Q ss_pred             ccccccCccc
Q psy9363         402 NLASTNLRNI  411 (421)
Q Consensus       402 ~Ls~N~l~~i  411 (421)
                      +|++|+|++.
T Consensus       451 dLs~N~Ls~~  460 (788)
T PRK15387        451 NLEGNPLSER  460 (788)
T ss_pred             ECCCCCCCch
Confidence            8888887754

>KOG3206|consensus

Probab=99.10  E-value=1.4e-10  Score=99.81  Aligned_cols=74  Identities=41%  Similarity=0.755  Sum_probs=66.3

Q ss_pred             CCCCceEEeec--C---ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363         183 DDIGLRVCDSE--G---HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF  257 (421)
Q Consensus       183 ~~i~~rv~~l~--~---~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~  257 (421)
                      ..+|.|+. +.  +   +.++++|+|+.+...|.|+||++|++. ||++|++.|++||.|. +.+|+|++|..+..| +|
T Consensus       149 i~vG~rCe-Vtv~G~~~Rrg~vrYvG~~~~k~G~wiGVeydEpl-GKnDGsv~G~ryF~c~-p~yGgfVrP~~V~Vg-df  224 (234)
T KOG3206|consen  149 IAVGRRCE-VTVPGQAPRRGTVRYVGPLEFKPGYWIGVEYDEPL-GKNDGSVNGKRYFECA-PKYGGFVRPRAVTVG-DF  224 (234)
T ss_pred             cccCCeeE-EecCCCCCcceEEEEecccCCCCceEEEEecCCcc-ccCCCcccceEeeecC-CccCCccccceeeec-CC
Confidence            56888877 42  2   899999999999999999999999999 9999999999999996 899999999999888 67


Q ss_pred             HHH
Q psy9363         258 MEA  260 (421)
Q Consensus       258 ~~a  260 (421)
                      |+.
T Consensus       225 pee  227 (234)
T KOG3206|consen  225 PEE  227 (234)
T ss_pred             Chh
Confidence            763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.00  E-value=4.9e-10  Score=108.24  Aligned_cols=123  Identities=18%  Similarity=0.039  Sum_probs=84.2

Q ss_pred             hhHHhhhCCCCcEEECCCCCCCCh--hhHHHHHhcCCCCceeec-ccccCC--C---CCCcccccccccchhccccccCC
Q psy9363          12 HDEIEQAVPFIEDLDLSRNLLASW--FAVGEITCQLKHLRHLNL-RIRLKS--S---SAPAHSYLAEVVFFVHLGRTLCD   83 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N~ls~~--~~i~~~~~~l~~L~~L~L-~N~l~~--~---~~p~~~~~~~~L~~L~L~~~~~~   83 (421)
                      -.++...++.|+.|+|+++.++.-  ..++..+...++|+.|++ .+.+.+  .   .++..++.+++|+.|+|++|.+.
T Consensus        15 ~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~   94 (319)
T cd00116          15 ATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG   94 (319)
T ss_pred             hHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC
Confidence            345566778899999999999742  357777888899999999 476652  0   11223445779999999887775


Q ss_pred             cch-hhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhc-cCceeccCCcc
Q psy9363          84 EDF-VKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARL-GGLKLLNGSAI  137 (421)
Q Consensus        84 ~~~-~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~ln~s~i  137 (421)
                      ... ..+..+... ++|++|++++|.+....  .......+..+ ++|+.|+++..
T Consensus        95 ~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~--~~~l~~~l~~~~~~L~~L~L~~n  147 (319)
T cd00116          95 PDGCGVLESLLRS-SSLQELKLNNNGLGDRG--LRLLAKGLKDLPPALEKLVLGRN  147 (319)
T ss_pred             hhHHHHHHHHhcc-CcccEEEeeCCccchHH--HHHHHHHHHhCCCCceEEEcCCC
Confidence            433 233332333 66999999999985321  12233456777 89999998753

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=98.99  E-value=2.5e-09  Score=120.27  Aligned_cols=96  Identities=18%  Similarity=0.163  Sum_probs=60.8

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~  377 (421)
                      +|+.|.|.+    +.+|... .+  ++|+.|+|++|..- ..++   ....+ +.|+|++|.|+.+|..+..+++|+.|+
T Consensus       803 ~L~~L~Ls~C~~L~~LP~~~-~L--~sL~~L~Ls~c~~L-~~~p---~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~  875 (1153)
T PLN03210        803 KLEHLEIENCINLETLPTGI-NL--ESLESLDLSGCSRL-RTFP---DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLD  875 (1153)
T ss_pred             CCCEEECCCCCCcCeeCCCC-Cc--cccCEEECCCCCcc-cccc---ccccccCEeECCCCCCccChHHHhcCCCCCEEE
Confidence            555666553    3344433 45  77777777776432 1111   12245 788888888888887777888888888


Q ss_pred             CcC-CCCCCCCcccccCcccccccccccccc
Q psy9363         378 LQE-NNIVDWGEVNALGSLPNLKYLNLASTN  407 (421)
Q Consensus       378 Ls~-N~l~~~~~~~~l~~l~~L~~L~Ls~N~  407 (421)
                      |++ |++..++  ..+..++.|+.++++++.
T Consensus       876 L~~C~~L~~l~--~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        876 MNGCNNLQRVS--LNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCCCCcCccC--cccccccCCCeeecCCCc
Confidence            877 5565543  345667777777777663

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.97  E-value=1.8e-10  Score=100.74  Aligned_cols=86  Identities=30%  Similarity=0.472  Sum_probs=48.1

Q ss_pred             hcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363         319 QIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSL  395 (421)
Q Consensus       319 ~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  395 (421)
                      ..+  .+|+.|+|++|.|+ ..    .+..++. ++|++++|+|+.++..+ ..+++|++|+|++|+|.++.++..++.+
T Consensus        39 ~~l--~~L~~L~Ls~N~I~~l~----~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l  112 (175)
T PF14580_consen   39 ATL--DKLEVLDLSNNQITKLE----GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNELEPLSSL  112 (175)
T ss_dssp             TT---TT--EEE-TTS--S--T----T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-
T ss_pred             hhh--cCCCEEECCCCCCcccc----CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHhHHHHcC
Confidence            357  89999999999998 43    2445778 99999999999986434 4689999999999999999988899999


Q ss_pred             ccccccccccccCcc
Q psy9363         396 PNLKYLNLASTNLRN  410 (421)
Q Consensus       396 ~~L~~L~Ls~N~l~~  410 (421)
                      |+|+.|+|.+|+++.
T Consensus       113 ~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen  113 PKLRVLSLEGNPVCE  127 (175)
T ss_dssp             TT--EEE-TT-GGGG
T ss_pred             CCcceeeccCCcccc
Confidence            999999999999985

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.94  E-value=8.2e-10  Score=117.29  Aligned_cols=75  Identities=17%  Similarity=0.064  Sum_probs=47.0

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      +...|+|+++.+++++.   .+  .+.|+.|+| +|+++.  +|..  .+++|++|+|++|.+..-+..+      .+.|
T Consensus       179 ~~~~L~L~~~~LtsLP~---~I--p~~L~~L~Ls~N~Lts--LP~~--l~~nL~~L~Ls~N~LtsLP~~l------~~~L  243 (754)
T PRK15370        179 NKTELRLKILGLTTIPA---CI--PEQITTLILDNNELKS--LPEN--LQGNIKTLYANSNQLTSIPATL------PDTI  243 (754)
T ss_pred             CceEEEeCCCCcCcCCc---cc--ccCCcEEEecCCCCCc--CChh--hccCCCEEECCCCccccCChhh------hccc
Confidence            46788888888875432   12  246788888 477773  4543  2357888888766654222211      3467


Q ss_pred             ceeeecCCCCC
Q psy9363         100 SSLRFTKNPIL  110 (421)
Q Consensus       100 ~~L~l~~N~l~  110 (421)
                      +.|+|++|.+.
T Consensus       244 ~~L~Ls~N~L~  254 (754)
T PRK15370        244 QEMELSINRIT  254 (754)
T ss_pred             cEEECcCCccC
Confidence            88888888774

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.92  E-value=6e-09  Score=110.42  Aligned_cols=76  Identities=20%  Similarity=0.144  Sum_probs=60.0

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN  402 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  402 (421)
                      ++|+.|++++|.|+  .++.   ..++ +.|+|++|+|+.+|..   .++|+.|++++|+|+.++.     ...+|+.|+
T Consensus       362 ~~L~~L~Ls~N~L~--~LP~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~-----l~~~L~~L~  428 (788)
T PRK15387        362 SELYKLWAYNNRLT--SLPA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPM-----LPSGLLSLS  428 (788)
T ss_pred             cccceehhhccccc--cCcc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCc-----chhhhhhhh
Confidence            67888999999998  2222   2345 8999999999988753   4689999999999987542     245789999


Q ss_pred             cccccCcccC
Q psy9363         403 LASTNLRNIK  412 (421)
Q Consensus       403 Ls~N~l~~i~  412 (421)
                      +++|+|+.+|
T Consensus       429 Ls~NqLt~LP  438 (788)
T PRK15387        429 VYRNQLTRLP  438 (788)
T ss_pred             hccCcccccC
Confidence            9999999653

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.87  E-value=2.7e-09  Score=102.99  Aligned_cols=93  Identities=24%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             hhhhcCCCCCccEEEeeCcccc---hhhHHHHhccCCC-cEEEccCCcCcccCC-CC-----CCCCCCcEEECcCCCCCC
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYI---WADILKLLANFPV-TCLKLPSNRITTLDS-VP-----GMFSSLEELYLQENNIVD  385 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~---~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~-----~~l~~L~~L~Ls~N~l~~  385 (421)
                      ..+..+  ++|+.|+|++|.++   ...+...+..+++ ++|++++|.++.... .+     ...+.|+.|++++|.+++
T Consensus       187 ~~l~~~--~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         187 EGLKAN--CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHhC--CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence            344566  79999999999997   2334556677888 999999999984211 11     124799999999999963


Q ss_pred             CC---cccccCccccccccccccccCcc
Q psy9363         386 WG---EVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       386 ~~---~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      ..   ....+..+++|+.+++++|.++.
T Consensus       265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~  292 (319)
T cd00116         265 DGAKDLAEVLAEKESLLELDLRGNKFGE  292 (319)
T ss_pred             HHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence            22   12345567899999999999985

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.82  E-value=1.1e-08  Score=108.81  Aligned_cols=82  Identities=18%  Similarity=0.186  Sum_probs=62.4

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCc--ccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGE--VNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~l~~L~~  400 (421)
                      ++|+.|+|++|.|+  .++..+  .+. +.|+|++|.|+.+|..+  ...|+.|++++|+|..++.  +...+.++.+..
T Consensus       346 ~sL~~L~Ls~N~L~--~LP~~l--p~~L~~LdLs~N~Lt~LP~~l--~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~  419 (754)
T PRK15370        346 PELQVLDVSKNQIT--VLPETL--PPTITTLDVSRNALTNLPENL--PAALQIMQASRNNLVRLPESLPHFRGEGPQPTR  419 (754)
T ss_pred             CcccEEECCCCCCC--cCChhh--cCCcCEEECCCCcCCCCCHhH--HHHHHHHhhccCCcccCchhHHHHhhcCCCccE
Confidence            68999999999998  122212  245 99999999999998654  2479999999999987652  123345688999


Q ss_pred             cccccccCccc
Q psy9363         401 LNLASTNLRNI  411 (421)
Q Consensus       401 L~Ls~N~l~~i  411 (421)
                      |++.+|+++.-
T Consensus       420 L~L~~Npls~~  430 (754)
T PRK15370        420 IIVEYNPFSER  430 (754)
T ss_pred             EEeeCCCccHH
Confidence            99999998643

>KOG4237|consensus

Probab=98.81  E-value=3.7e-10  Score=107.25  Aligned_cols=94  Identities=20%  Similarity=0.105  Sum_probs=70.2

Q ss_pred             ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-c-cccCCCCCCc-ccccccccchhccccccCCcchh
Q psy9363          11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-R-IRLKSSSAPA-HSYLAEVVFFVHLGRTLCDEDFV   87 (421)
Q Consensus        11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~-N~l~~~~~p~-~~~~~~~L~~L~L~~~~~~~~~~   87 (421)
                      .|+..++.+++|+.||||+|.|+.+  -|+.+.-|++|..|-+ + |+++.  +|. ..+.+.+|+.|.|+-|.+.--..
T Consensus        82 iP~~aF~~l~~LRrLdLS~N~Is~I--~p~AF~GL~~l~~Lvlyg~NkI~~--l~k~~F~gL~slqrLllNan~i~Cir~  157 (498)
T KOG4237|consen   82 IPPGAFKTLHRLRRLDLSKNNISFI--APDAFKGLASLLSLVLYGNNKITD--LPKGAFGGLSSLQRLLLNANHINCIRQ  157 (498)
T ss_pred             CChhhccchhhhceecccccchhhc--ChHhhhhhHhhhHHHhhcCCchhh--hhhhHhhhHHHHHHHhcChhhhcchhH
Confidence            5667778899999999999999944  4677888999999998 6 99983  454 34567788888887665533333


Q ss_pred             hHHHHHhhCCCCceeeecCCCCCC
Q psy9363          88 KEGSLLHYLPKLSSLRFTKNPILA  111 (421)
Q Consensus        88 ~~~~ll~~l~~L~~L~l~~N~l~~  111 (421)
                      +.   +..+++|.-|.+.+|.+..
T Consensus       158 ~a---l~dL~~l~lLslyDn~~q~  178 (498)
T KOG4237|consen  158 DA---LRDLPSLSLLSLYDNKIQS  178 (498)
T ss_pred             HH---HHHhhhcchhcccchhhhh
Confidence            32   6668888888888887643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.71  E-value=9.4e-09  Score=73.90  Aligned_cols=59  Identities=36%  Similarity=0.600  Sum_probs=50.1

Q ss_pred             CC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccccccccccC
Q psy9363         349 PV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL  408 (421)
Q Consensus       349 ~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l  408 (421)
                      |+ ++|++++|+|+.+|... ..+++|++|++++|.++.++ +..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCcC
Confidence            45 78999999999888654 88899999999999997765 56888999999999999976

...

>PLN03210 Resistant to P

Probab=98.68  E-value=8e-08  Score=108.26  Aligned_cols=84  Identities=14%  Similarity=0.105  Sum_probs=59.7

Q ss_pred             hhCCCCcEEECCCCC-CCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363          17 QAVPFIEDLDLSRNL-LASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH   94 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~-ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~   94 (421)
                      ..+++|+.|+|+++. +.   .+|. ++.+++|+.|+|+ |... ..+|..++.+++|+.|+|++|..-..++..    .
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~---~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~----i  701 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLK---EIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTG----I  701 (1153)
T ss_pred             ccCCCCCEEECCCCCCcC---cCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCc----C
Confidence            357899999999765 54   3343 6678999999994 4333 367877888899999999776432333321    1


Q ss_pred             hCCCCceeeecCCCC
Q psy9363          95 YLPKLSSLRFTKNPI  109 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l  109 (421)
                      .+++|+.|+|++|..
T Consensus       702 ~l~sL~~L~Lsgc~~  716 (1153)
T PLN03210        702 NLKSLYRLNLSGCSR  716 (1153)
T ss_pred             CCCCCCEEeCCCCCC
Confidence            578899999988864

syringae 6; Provisional

>KOG0617|consensus

Probab=98.65  E-value=3e-09  Score=90.44  Aligned_cols=104  Identities=20%  Similarity=0.243  Sum_probs=67.7

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEEC
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYL  378 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~L  378 (421)
                      +++++.+++   ..+|+-+..+  .+|+.|++++|.|.  +.|..++.+|+ +.|+++-|++..+|..++.++.|+.|||
T Consensus        34 ~ITrLtLSHNKl~~vppnia~l--~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   34 NITRLTLSHNKLTVVPPNIAEL--KNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhcccCceeecCCcHHHh--hhhhhhhcccchhh--hcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence            344555555   4556666677  77777777777775  33455666677 7777777777777777777777777777


Q ss_pred             cCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         379 QENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       379 s~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      ..|++..-..+..|-.+..|+.|+|++|.+.-
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~  141 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEI  141 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCccc
Confidence            77777554444455556666666666666654

>KOG2123|consensus

Probab=98.63  E-value=1.4e-08  Score=92.61  Aligned_cols=116  Identities=21%  Similarity=0.193  Sum_probs=95.5

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      .+++.|++=+..|+++    .++..||.||+|.|| |++++  +. .+..|++|++|+|..|-+ .++.++.. |..+|+
T Consensus        19 ~~vkKLNcwg~~L~DI----sic~kMp~lEVLsLSvNkIss--L~-pl~rCtrLkElYLRkN~I-~sldEL~Y-Lknlps   89 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI----SICEKMPLLEVLSLSVNKISS--LA-PLQRCTRLKELYLRKNCI-ESLDELEY-LKNLPS   89 (388)
T ss_pred             HHhhhhcccCCCccHH----HHHHhcccceeEEeecccccc--ch-hHHHHHHHHHHHHHhccc-ccHHHHHH-HhcCch
Confidence            4788899988889853    467789999999997 99984  22 245899999999976555 35566666 899999


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhcc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGS  145 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~a  145 (421)
                      |+.|.|..||.++. +...||..++--+|+|+.||-..|+++|.++|
T Consensus        90 Lr~LWL~ENPCc~~-ag~nYR~~VLR~LPnLkKLDnv~VteeEle~A  135 (388)
T KOG2123|consen   90 LRTLWLDENPCCGE-AGQNYRRKVLRVLPNLKKLDNVPVTEEELEEA  135 (388)
T ss_pred             hhhHhhccCCcccc-cchhHHHHHHHHcccchhccCccccHHHHHHH
Confidence            99999999996544 46789999999999999999999999988666

>KOG0617|consensus

Probab=98.63  E-value=3.3e-09  Score=90.17  Aligned_cols=93  Identities=24%  Similarity=0.264  Sum_probs=79.3

Q ss_pred             cCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccc
Q psy9363         320 IFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL  398 (421)
Q Consensus       320 ~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L  398 (421)
                      .+  .+++.|.||+|+++  .++.-+..+.+ +.|++.+|+|+++|.++..++.|+.|+++-|++...  +..|+.+|.|
T Consensus        31 ~~--s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~l--prgfgs~p~l  104 (264)
T KOG0617|consen   31 NM--SNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNIL--PRGFGSFPAL  104 (264)
T ss_pred             ch--hhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcC--ccccCCCchh
Confidence            56  88999999999998  22233445567 999999999999999999999999999999999553  5689999999


Q ss_pred             cccccccccCcccCCCCCCC
Q psy9363         399 KYLNLASTNLRNIKLNKEGH  418 (421)
Q Consensus       399 ~~L~Ls~N~l~~i~~p~~~~  418 (421)
                      +.|||++|++.+-.+|....
T Consensus       105 evldltynnl~e~~lpgnff  124 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFF  124 (264)
T ss_pred             hhhhccccccccccCCcchh
Confidence            99999999999988886543

>COG5244 NIP100 Dynactin complex subunit involved in mitotic spindle partitioning in anaphase B [Cell division and chromosome partitioning]

Probab=98.62  E-value=6.7e-08  Score=93.02  Aligned_cols=64  Identities=38%  Similarity=0.734  Sum_probs=59.7

Q ss_pred             CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363         183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD  249 (421)
Q Consensus       183 ~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~  249 (421)
                      +.++++|. ++..+|++||+|......|.|+|+|.|++. |+++|+++|+|||.|. ...|.|+++.
T Consensus         4 lSv~D~Vl-l~~~~g~VrfiG~t~f~~GiW~GlELd~p~-GkNDGSvnGvRYF~Ck-k~~giFir~~   67 (669)
T COG5244           4 LSVNDRVL-LGDKFGTVRFIGKTKFKDGIWIGLELDDPV-GKNDGSVNGVRYFHCK-KRHGIFIRPD   67 (669)
T ss_pred             eecCCEEE-eccccceEEEeeecccccceEEEEEecCCC-CCCCCccCceEEEEec-CCcceEEecC
Confidence            56888988 889999999999999999999999999998 9999999999999997 7899999975

>KOG2739|consensus

Probab=98.49  E-value=3.8e-08  Score=89.33  Aligned_cols=133  Identities=21%  Similarity=0.226  Sum_probs=105.1

Q ss_pred             CCccCcCCCChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-c--ccCCCCCCcccccccccchhccc
Q psy9363           2 DSRVSNAGKTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-I--RLKSSSAPAHSYLAEVVFFVHLG   78 (421)
Q Consensus         2 ~~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N--~l~~~~~p~~~~~~~~L~~L~L~   78 (421)
                      ++.++.+| ....+...+.+|+.|++.+-.+++.-..|.    ||+|++|.++ |  +.+ +.++.....+++|++|+|+
T Consensus        26 D~~~s~~g-~~~gl~d~~~~le~ls~~n~gltt~~~~P~----Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls   99 (260)
T KOG2739|consen   26 DNARSGAG-KLGGLTDEFVELELLSVINVGLTTLTNFPK----LPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLS   99 (260)
T ss_pred             chhhhcCC-CcccccccccchhhhhhhccceeecccCCC----cchhhhhcccCCccccc-ccceehhhhCCceeEEeec
Confidence            45566666 556667778899999999999998777776    8999999995 8  555 4555555677999999999


Q ss_pred             cccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhcc
Q psy9363          79 RTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGS  145 (421)
Q Consensus        79 ~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~a  145 (421)
                      .|.+.. +..+.. +..+++|..|++..|+.+.   ...||..++..+++|++||+..+...|...+
T Consensus       100 ~Nki~~-lstl~p-l~~l~nL~~Ldl~n~~~~~---l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~~  161 (260)
T KOG2739|consen  100 GNKIKD-LSTLRP-LKELENLKSLDLFNCSVTN---LDDYREKVFLLLPSLKYLDGCDVDGEEAPEA  161 (260)
T ss_pred             CCcccc-ccccch-hhhhcchhhhhcccCCccc---cccHHHHHHHHhhhhccccccccCCcccccc
Confidence            887743 444444 7889999999999999876   3789999999999999999998776665433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.40  E-value=2.2e-07  Score=66.71  Aligned_cols=58  Identities=24%  Similarity=0.363  Sum_probs=50.8

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCC
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNI  383 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l  383 (421)
                      ++|+.|++++|.|+ .+.  ..+..+++ ++|++++|.|+.+++.. ..+++|+.|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~--~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPP--DSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECT--TTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCH--HHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            57999999999998 432  56788899 99999999999988755 8999999999999986

...

>PLN03150 hypothetical protein; Provisional

Probab=98.39  E-value=3.2e-07  Score=96.71  Aligned_cols=85  Identities=20%  Similarity=0.252  Sum_probs=74.5

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      .++.|+|++|.++  +.+|..+++|++|+.|+| +|.+. +.+|..++.+++|+.|+|++|.+++.++..   +..+++|
T Consensus       419 ~v~~L~L~~n~L~--g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~---l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQGLR--GFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPES---LGQLTSL  492 (623)
T ss_pred             EEEEEECCCCCcc--ccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchH---HhcCCCC
Confidence            4889999999998  778888999999999999 58888 688888889999999999998888876654   7789999


Q ss_pred             ceeeecCCCCCC
Q psy9363         100 SSLRFTKNPILA  111 (421)
Q Consensus       100 ~~L~l~~N~l~~  111 (421)
                      ++|+|++|.+..
T Consensus       493 ~~L~Ls~N~l~g  504 (623)
T PLN03150        493 RILNLNGNSLSG  504 (623)
T ss_pred             CEEECcCCcccc
Confidence            999999999844

>KOG2982|consensus

Probab=98.35  E-value=3.2e-07  Score=84.67  Aligned_cols=108  Identities=24%  Similarity=0.448  Sum_probs=84.6

Q ss_pred             CccCCCC-CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEEECcC
Q psy9363         305 NKLPIPN-DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEELYLQE  380 (421)
Q Consensus       305 ~~l~l~~-~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L~Ls~  380 (421)
                      ....|++ ++....-...  +.+++|||..|.|+ |.+|..++.++|. +.|+|+.|.+.. |...-....+|++|-|.+
T Consensus        53 n~~~id~~gd~~~~~~~~--~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg  130 (418)
T KOG2982|consen   53 NGSIIDNEGDVMLFGSSV--TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG  130 (418)
T ss_pred             cCCCCCcchhHHHHHHHh--hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence            3344443 4444555677  89999999999999 9999999999999 999999999973 322113557999999999


Q ss_pred             CCCCCCCccc-ccCccccccccccccccCcccCCCC
Q psy9363         381 NNIVDWGEVN-ALGSLPNLKYLNLASTNLRNIKLNK  415 (421)
Q Consensus       381 N~l~~~~~~~-~l~~l~~L~~L~Ls~N~l~~i~~p~  415 (421)
                      ..+ +|.... .+..+|.+++|++|.|.+..+.+-+
T Consensus       131 T~L-~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd  165 (418)
T KOG2982|consen  131 TGL-SWTQSTSSLDDLPKVTELHMSDNSLRQLNLDD  165 (418)
T ss_pred             CCC-Chhhhhhhhhcchhhhhhhhccchhhhhcccc
Confidence            999 887555 4677999999999999877655543

>PLN03150 hypothetical protein; Provisional

Probab=98.31  E-value=5.5e-07  Score=94.96  Aligned_cols=92  Identities=20%  Similarity=0.217  Sum_probs=47.7

Q ss_pred             CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcc
Q psy9363         312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEV  389 (421)
Q Consensus       312 ~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  389 (421)
                      +.+|..+..+  ++|+.|+|++|.++ +.++..+..++. +.|+|++|+++ .+|..+..+++|+.|+|++|++ .+..+
T Consensus       432 g~ip~~i~~L--~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l-~g~iP  507 (623)
T PLN03150        432 GFIPNDISKL--RHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL-SGRVP  507 (623)
T ss_pred             ccCCHHHhCC--CCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc-cccCC
Confidence            4455555555  55666666666555 334444555555 55666666555 3444445555566666666655 33333


Q ss_pred             cccCc-ccccccccccccc
Q psy9363         390 NALGS-LPNLKYLNLASTN  407 (421)
Q Consensus       390 ~~l~~-l~~L~~L~Ls~N~  407 (421)
                      ..++. +.++..+++.+|.
T Consensus       508 ~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        508 AALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             hHHhhccccCceEEecCCc
Confidence            34433 2344455555554

>KOG1259|consensus

Probab=98.31  E-value=1.4e-07  Score=87.02  Aligned_cols=103  Identities=24%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC--------------
Q psy9363         304 TNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS--------------  365 (421)
Q Consensus       304 L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~--------------  365 (421)
                      |+.+++++   ..+....+-.  |.++.|++|+|.|.  .+ ..+..+++ +.|+||+|.++.+..              
T Consensus       286 LtelDLS~N~I~~iDESvKL~--Pkir~L~lS~N~i~--~v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLA--PKLRRLILSQNRIR--TV-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhccccccchhhhhhhhhhc--cceeEEecccccee--ee-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence            34444444   3334444455  66666666666665  11 11344555 666666666654332              


Q ss_pred             --------CCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363         366 --------VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       366 --------~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                              .+..+-+|..||+++|+|+..+++..++++|-|+++.|.+|+++.+
T Consensus       361 ~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  361 QNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence                    1245556777888888887777777788888888888888888754

>KOG0971|consensus

Probab=98.22  E-value=2.3e-06  Score=88.36  Aligned_cols=69  Identities=33%  Similarity=0.616  Sum_probs=61.7

Q ss_pred             ccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcc
Q psy9363         181 MEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL  251 (421)
Q Consensus       181 ~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l  251 (421)
                      +.+.+|.||...+. -.|++.|+|...++.|.|+||-+|++. ||++|++.|.+||.|. +++|-||+.+.+
T Consensus         4 r~lkvG~RVevtgknl~G~VayvG~T~FA~G~WvGVvLDep~-GKNnGsVqg~qYF~Cd-~ncG~FVr~sq~   73 (1243)
T KOG0971|consen    4 RSLKVGTRVEVTGKNLQGTVAYVGQTQFAEGKWVGVVLDEPK-GKNNGSVQGVQYFECD-ENCGVFVRSSQV   73 (1243)
T ss_pred             ccccccceEEeccCCccceEEEecccccccCceEEEEecccc-CCCCCcccceeeEecC-CCcceEeehhhh
Confidence            44789999993333 679999999999999999999999988 9999999999999996 899999999864

>KOG1259|consensus

Probab=98.20  E-value=3.2e-07  Score=84.75  Aligned_cols=79  Identities=25%  Similarity=0.245  Sum_probs=54.3

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCC--CCCCCCCCcE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDS--VPGMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~--~~~~l~~L~~  375 (421)
                      +|+.+++++   ..+..+-.++  .+++.|.|+.|.|. ...    +..+=+ ..|++++|+|..+..  .++.+|.|+.
T Consensus       330 ~L~~LDLS~N~Ls~~~Gwh~KL--GNIKtL~La~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~  403 (490)
T KOG1259|consen  330 QLQLLDLSGNLLAECVGWHLKL--GNIKTLKLAQNKIETLSG----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLET  403 (490)
T ss_pred             cceEeecccchhHhhhhhHhhh--cCEeeeehhhhhHhhhhh----hHhhhhheeccccccchhhHHHhcccccccHHHH
Confidence            666666665   3334445566  77777777777775 211    222334 789999999987653  3589999999


Q ss_pred             EECcCCCCCCCC
Q psy9363         376 LYLQENNIVDWG  387 (421)
Q Consensus       376 L~Ls~N~l~~~~  387 (421)
                      +.|-+|.|....
T Consensus       404 l~L~~NPl~~~v  415 (490)
T KOG1259|consen  404 LRLTGNPLAGSV  415 (490)
T ss_pred             HhhcCCCccccc
Confidence            999999996543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.14  E-value=4.7e-06  Score=83.18  Aligned_cols=64  Identities=25%  Similarity=0.366  Sum_probs=41.0

Q ss_pred             hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVD  385 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~  385 (421)
                      .+..+  +++..+.+.+|++.  .++.....++. +.|++++|.++.++. +..+.+++.|++++|.+..
T Consensus       227 ~~~~~--~~l~~l~l~~n~~~--~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         227 SLSNL--KNLSGLELSNNKLE--DLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             hhhhc--ccccccccCCceee--eccchhccccccceecccccccccccc-ccccCccCEEeccCccccc
Confidence            34455  66666667777765  11244555666 777777777777665 6666777777777777744

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.98  E-value=5.1e-06  Score=55.17  Aligned_cols=38  Identities=45%  Similarity=0.655  Sum_probs=21.2

Q ss_pred             CCcEEECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363         372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       372 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      +|++|++++|+|++++  ..++.|++|++|++++|+|+++
T Consensus         2 ~L~~L~l~~N~i~~l~--~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLP--PELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHG--GHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccC--chHhCCCCCCEEEecCCCCCCC
Confidence            5666666666665532  1356666666666666666654

...

>KOG1644|consensus

Probab=97.95  E-value=5.8e-06  Score=72.47  Aligned_cols=83  Identities=28%  Similarity=0.468  Sum_probs=68.9

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      .+...+||++|.+. .    ..+..++. .+|.|++|+|+.|.+.+ ..+++|+.|.|.+|.|..+.++..+..+|.|+.
T Consensus        42 d~~d~iDLtdNdl~~l----~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL----DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             cccceecccccchhhc----ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            67788899999987 3    33556677 89999999999888766 667889999999999988888888888999999


Q ss_pred             cccccccCcc
Q psy9363         401 LNLASTNLRN  410 (421)
Q Consensus       401 L~Ls~N~l~~  410 (421)
                      |.+-+|++++
T Consensus       118 Ltll~Npv~~  127 (233)
T KOG1644|consen  118 LTLLGNPVEH  127 (233)
T ss_pred             eeecCCchhc
Confidence            9999998875

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=5.8e-06  Score=54.90  Aligned_cols=37  Identities=35%  Similarity=0.397  Sum_probs=29.0

Q ss_pred             cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCC
Q psy9363         351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWG  387 (421)
Q Consensus       351 ~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~  387 (421)
                      ++|++++|+|+.+|+.+..+++|+.|++++|+|++++
T Consensus         4 ~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    4 EELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             eEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            7788888888888765788888888888888887644

...

>KOG4579|consensus

Probab=97.76  E-value=3.4e-06  Score=69.50  Aligned_cols=86  Identities=21%  Similarity=0.341  Sum_probs=67.6

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ..|+..+|++|.|. ++.  .+...+|. +.|+|++|.|+++|..+..++.|+.|+++.|.+...  +..+..+.+|..|
T Consensus        53 ~el~~i~ls~N~fk~fp~--kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~--p~vi~~L~~l~~L  128 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPK--KFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAE--PRVIAPLIKLDML  128 (177)
T ss_pred             ceEEEEecccchhhhCCH--HHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccc--hHHHHHHHhHHHh
Confidence            56777899999998 433  55666777 889999999999988888889999999999998553  3445568888888


Q ss_pred             ccccccCcccCC
Q psy9363         402 NLASTNLRNIKL  413 (421)
Q Consensus       402 ~Ls~N~l~~i~~  413 (421)
                      +..+|.+..|+.
T Consensus       129 ds~~na~~eid~  140 (177)
T KOG4579|consen  129 DSPENARAEIDV  140 (177)
T ss_pred             cCCCCccccCcH
Confidence            888888877654

>KOG4579|consensus

Probab=97.72  E-value=3.9e-06  Score=69.12  Aligned_cols=130  Identities=21%  Similarity=0.179  Sum_probs=93.3

Q ss_pred             ccCcCCCChhHHhhhCCC---CcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhcccc
Q psy9363           4 RVSNAGKTHDEIEQAVPF---IEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGR   79 (421)
Q Consensus         4 ~i~~~g~~~~~~~~~~~~---L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~   79 (421)
                      .|-++|.-..+..+.|..   +-.+|||...|-.+...+.-+.....|+..+| +|.|.. ..+.+...|+.++.|+|++
T Consensus         8 iV~~agrgV~evVercedakE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~   86 (177)
T KOG4579|consen    8 IVARAGRGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLAN   86 (177)
T ss_pred             HHHHHhhhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcch
Confidence            445666656666666654   67789999988655555555666677888899 588883 4445566778999999999


Q ss_pred             ccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHH
Q psy9363          80 TLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYI  150 (421)
Q Consensus        80 ~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l  150 (421)
                      |.++.-+.+    ++.+|.|+.|+++.||+.       ..+.+|+.+.++.+||.-.     .+.+|+.|-
T Consensus        87 neisdvPeE----~Aam~aLr~lNl~~N~l~-------~~p~vi~~L~~l~~Lds~~-----na~~eid~d  141 (177)
T KOG4579|consen   87 NEISDVPEE----LAAMPALRSLNLRFNPLN-------AEPRVIAPLIKLDMLDSPE-----NARAEIDVD  141 (177)
T ss_pred             hhhhhchHH----HhhhHHhhhcccccCccc-------cchHHHHHHHhHHHhcCCC-----CccccCcHH
Confidence            988544443    677999999999999983       3467888888888888753     333555555

>KOG1909|consensus

Probab=97.68  E-value=2.5e-05  Score=73.86  Aligned_cols=126  Identities=20%  Similarity=0.151  Sum_probs=91.2

Q ss_pred             hHHhhhCCCCcEEECCCCCCCChhh--HHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-
Q psy9363          13 DEIEQAVPFIEDLDLSRNLLASWFA--VGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-   85 (421)
Q Consensus        13 ~~~~~~~~~L~~L~Ls~N~ls~~~~--i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-   85 (421)
                      .++.+.++.|+++-+++|.|..-+.  +...+.++|+|++||| +|-|+.-   .+......++.|++|+++.|.+... 
T Consensus       178 A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~G  257 (382)
T KOG1909|consen  178 AEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEG  257 (382)
T ss_pred             HHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccccc
Confidence            4667888999999999999986433  4567888999999999 6988731   1111223457899999999887533 


Q ss_pred             -hhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChh
Q psy9363          86 -FVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ  140 (421)
Q Consensus        86 -~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~  140 (421)
                       ..-...+-...|+|+.|.|.+|.++...  .......++..|.|+.||++.....
T Consensus       258 a~a~~~al~~~~p~L~vl~l~gNeIt~da--~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  258 AIAFVDALKESAPSLEVLELAGNEITRDA--ALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             HHHHHHHHhccCCCCceeccCcchhHHHH--HHHHHHHHhcchhhHHhcCCccccc
Confidence             4444455667899999999999985432  2233456777899999999866553

>KOG0531|consensus

Probab=97.59  E-value=2.6e-05  Score=78.49  Aligned_cols=88  Identities=30%  Similarity=0.341  Sum_probs=55.3

Q ss_pred             hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP  396 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  396 (421)
                      ...+  ++|+.|++.+|.|.  .+......+++ +.|+|++|+|+.+.. +..+..|+.|++++|.|+.++   .+..++
T Consensus        91 l~~~--~~l~~l~l~~n~i~--~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~i~~~~---~~~~l~  162 (414)
T KOG0531|consen   91 LSKL--KSLEALDLYDNKIE--KIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNLISDIS---GLESLK  162 (414)
T ss_pred             cccc--cceeeeeccccchh--hcccchhhhhcchheeccccccccccc-hhhccchhhheeccCcchhcc---CCccch
Confidence            4555  67777777777776  12222445566 777777777776653 455666777777777776643   455566


Q ss_pred             cccccccccccCcccCC
Q psy9363         397 NLKYLNLASTNLRNIKL  413 (421)
Q Consensus       397 ~L~~L~Ls~N~l~~i~~  413 (421)
                      .|+.+++++|+++.+..
T Consensus       163 ~L~~l~l~~n~i~~ie~  179 (414)
T KOG0531|consen  163 SLKLLDLSYNRIVDIEN  179 (414)
T ss_pred             hhhcccCCcchhhhhhh
Confidence            77777777777766543

>KOG1859|consensus

Probab=97.55  E-value=1.5e-05  Score=81.78  Aligned_cols=83  Identities=24%  Similarity=0.294  Sum_probs=49.7

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH   94 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~   94 (421)
                      .+.+++|+.||||+|.+.+.+    .+..++.|+.|||+ |.+..  +|...-.-.+|+.|.|.||-. -.+..    +.
T Consensus       183 Lqll~ale~LnLshNk~~~v~----~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l-~tL~g----ie  251 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD----NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNAL-TTLRG----IE  251 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH----HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHH-Hhhhh----HH
Confidence            456788999999999998644    45669999999995 98874  333211112366666655533 11222    22


Q ss_pred             hCCCCceeeecCCCC
Q psy9363          95 YLPKLSSLRFTKNPI  109 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l  109 (421)
                      +|.+|+.||++.|-|
T Consensus       252 ~LksL~~LDlsyNll  266 (1096)
T KOG1859|consen  252 NLKSLYGLDLSYNLL  266 (1096)
T ss_pred             hhhhhhccchhHhhh
Confidence            344444455555544

>KOG1859|consensus

Probab=97.53  E-value=1.2e-05  Score=82.50  Aligned_cols=46  Identities=17%  Similarity=0.291  Sum_probs=25.5

Q ss_pred             hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      ++..++.-+++++.|.+-.-|- .    +...+..|..+.+|++|.+..+.
T Consensus        75 qLq~i~d~lqkt~~lkl~~~pa-~----~pt~pi~ifpF~sLr~LElrg~~  120 (1096)
T KOG1859|consen   75 QLQRILDFLQKTKVLKLLPSPA-R----DPTEPISIFPFRSLRVLELRGCD  120 (1096)
T ss_pred             HHHHHHHHHhhheeeeecccCC-C----CCCCCceeccccceeeEEecCcc
Confidence            3333455667777777666552 1    11125566677777777665443

>KOG1909|consensus

Probab=97.52  E-value=0.00019  Score=68.00  Aligned_cols=122  Identities=18%  Similarity=0.190  Sum_probs=88.0

Q ss_pred             hhhCCCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeec-ccccCCC---C---------CCcccccccccchhccccc
Q psy9363          16 EQAVPFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSS---S---------APAHSYLAEVVFFVHLGRT   80 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~---~---------~p~~~~~~~~L~~L~L~~~   80 (421)
                      ...||+|++||||+|-|..  ...+...+++...|+.|.| +|.+...   .         .....+.-++|++++.++|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN  167 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN  167 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence            4468899999999999984  3455667888999999999 4666521   1         1112234468999999888


Q ss_pred             cCC-cchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363          81 LCD-EDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        81 ~~~-~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                      .+- +....+...+...|.|+.++++.|.|....  -......+.++++|++||+...+.
T Consensus       168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG--~~al~eal~~~~~LevLdl~DNtf  225 (382)
T KOG1909|consen  168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEG--VTALAEALEHCPHLEVLDLRDNTF  225 (382)
T ss_pred             ccccccHHHHHHHHHhccccceEEEecccccCch--hHHHHHHHHhCCcceeeecccchh
Confidence            763 223334444788899999999999986553  245567899999999999975543

>KOG4568|consensus

Probab=97.51  E-value=8.6e-05  Score=77.24  Aligned_cols=65  Identities=34%  Similarity=0.616  Sum_probs=54.6

Q ss_pred             CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363         183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD  249 (421)
Q Consensus       183 ~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~  249 (421)
                      +.+|.++.-.....|.++|.|++....|.|.||+.++.. |+++|++.|++||.|. +..|.|.+..
T Consensus        18 ~~ig~~v~v~~~~~G~v~y~G~t~f~~G~w~GveL~~p~-GKNdGsv~G~rYF~ce-~~kgif~~~~   82 (664)
T KOG4568|consen   18 FIIGRRVWVNNVELGFVRYAGETDFAKGIWAGVELLEPK-GKNDGSVHGKRYFQCE-PKKGIFFRQG   82 (664)
T ss_pred             hhhcceEEecCCcceeeeeccCcccccceeeceeecccc-CCCCcccchhhhhccc-cccceeeccc
Confidence            568888873345999999999999999999999999988 9999999999999998 4444455544

>KOG3665|consensus

Probab=97.42  E-value=0.00027  Score=75.01  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=77.0

Q ss_pred             ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363          11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE   89 (421)
Q Consensus        11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~   89 (421)
                      -|.+++..+|+|++|.+++=.+.. ++....+.++|+|.+||+| -+++.  + ..++.+.+|++|.+.|--+ .+..++
T Consensus       139 W~~kig~~LPsL~sL~i~~~~~~~-~dF~~lc~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq~L~mrnLe~-e~~~~l  213 (699)
T KOG3665|consen  139 WPKKIGTMLPSLRSLVISGRQFDN-DDFSQLCASFPNLRSLDISGTNISN--L-SGISRLKNLQVLSMRNLEF-ESYQDL  213 (699)
T ss_pred             HHHHHhhhCcccceEEecCceecc-hhHHHHhhccCccceeecCCCCccC--c-HHHhccccHHHHhccCCCC-CchhhH
Confidence            466788888888888888877655 4567777788888888884 45552  1 4456777888888855322 122334


Q ss_pred             HHHHhhCCCCceeeecCCCCCCccccchhHHH--HHHhccCceeccCC
Q psy9363          90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREK--TIARLGGLKLLNGS  135 (421)
Q Consensus        90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~i~~l~~L~~ln~s  135 (421)
                      .. +..|.+|+.||+|........  .-.+++  .-.-+|.|+.||-|
T Consensus       214 ~~-LF~L~~L~vLDIS~~~~~~~~--~ii~qYlec~~~LpeLrfLDcS  258 (699)
T KOG3665|consen  214 ID-LFNLKKLRVLDISRDKNNDDT--KIIEQYLECGMVLPELRFLDCS  258 (699)
T ss_pred             HH-HhcccCCCeeeccccccccch--HHHHHHHHhcccCccccEEecC
Confidence            34 677889999999888765443  111222  12237888888887

>KOG2123|consensus

Probab=97.41  E-value=9.7e-06  Score=74.39  Aligned_cols=83  Identities=29%  Similarity=0.423  Sum_probs=73.1

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN  402 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  402 (421)
                      .+.+.|++-++.|+  +| .++..||. +.|.||-|+|+.+.+ +..|.+|++|+|..|.|.++.++..+.++|+|++|.
T Consensus        19 ~~vkKLNcwg~~L~--DI-sic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD--DI-SICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCcc--HH-HHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            67788888888888  22 57788999 999999999999864 788999999999999999999888999999999999


Q ss_pred             cccccCcc
Q psy9363         403 LASTNLRN  410 (421)
Q Consensus       403 Ls~N~l~~  410 (421)
                      |..|+=.+
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            99998765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.30  E-value=8.8e-05  Score=74.05  Aligned_cols=90  Identities=22%  Similarity=0.290  Sum_probs=56.5

Q ss_pred             CCCchhhhcCCCC-CccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcc
Q psy9363         312 DTSGVMEQIFPQG-HIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV  389 (421)
Q Consensus       312 ~~~~~~~~~l~~~-~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  389 (421)
                      ..++.....+  + +|+.|++++|.+.  .++.....++. +.|++++|+++.++......+.|+.|++++|+++.++. 
T Consensus       129 ~~i~~~~~~~--~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~-  203 (394)
T COG4886         129 TDIPPLIGLL--KSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPP-  203 (394)
T ss_pred             ccCccccccc--hhhcccccccccchh--hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCCccccCch-
Confidence            3444444454  4 6777777777776  22234566666 77777777777776544467777777777777766542 


Q ss_pred             cccCcccccccccccccc
Q psy9363         390 NALGSLPNLKYLNLASTN  407 (421)
Q Consensus       390 ~~l~~l~~L~~L~Ls~N~  407 (421)
                       .++....|++|.+++|+
T Consensus       204 -~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         204 -EIELLSALEELDLSNNS  220 (394)
T ss_pred             -hhhhhhhhhhhhhcCCc
Confidence             22344457777777774

>KOG0531|consensus

Probab=97.01  E-value=0.00021  Score=71.86  Aligned_cols=87  Identities=25%  Similarity=0.331  Sum_probs=71.8

Q ss_pred             hcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccc
Q psy9363         319 QIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPN  397 (421)
Q Consensus       319 ~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~  397 (421)
                      ..+  ..+..+.+..|.+.  .+......+.+ +.|++.+|+|..+...+..+++|++|+|++|.|+++.   .+..++.
T Consensus        69 ~~l--~~l~~l~l~~n~i~--~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~  141 (414)
T KOG0531|consen   69 ESL--TSLKELNLRQNLIA--KILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE---GLSTLTL  141 (414)
T ss_pred             HHh--HhHHhhccchhhhh--hhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc---chhhccc
Confidence            456  77788889999987  22344666778 9999999999998764688999999999999998844   6778888


Q ss_pred             ccccccccccCcccC
Q psy9363         398 LKYLNLASTNLRNIK  412 (421)
Q Consensus       398 L~~L~Ls~N~l~~i~  412 (421)
                      |+.|++++|.|+.+.
T Consensus       142 L~~L~l~~N~i~~~~  156 (414)
T KOG0531|consen  142 LKELNLSGNLISDIS  156 (414)
T ss_pred             hhhheeccCcchhcc
Confidence            999999999998753

>KOG2120|consensus

Probab=96.99  E-value=0.00043  Score=64.43  Aligned_cols=66  Identities=14%  Similarity=0.049  Sum_probs=41.2

Q ss_pred             HhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc--cccCCCCCCcccccccccchhccccccC
Q psy9363          15 IEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR--IRLKSSSAPAHSYLAEVVFFVHLGRTLC   82 (421)
Q Consensus        15 ~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~--N~l~~~~~p~~~~~~~~L~~L~L~~~~~   82 (421)
                      |...|.+|+.|.|.++++.  +.|...++.=.+|+.|+|+  +.|+..........|+.|..|+|+.|..
T Consensus       205 iLs~C~kLk~lSlEg~~Ld--D~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  205 ILSQCSKLKNLSLEGLRLD--DPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             HHHHHHhhhhccccccccC--cHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence            4456777777777777777  4566666666777777773  6665333333344666777777766643

>KOG2739|consensus

Probab=96.97  E-value=0.00039  Score=63.53  Aligned_cols=80  Identities=23%  Similarity=0.313  Sum_probs=50.8

Q ss_pred             CCccEEEeeCc--ccchhhHHHHhccCCC-cEEEccCCcCcccCC--CCCCCCCCcEEECcCCCCCCCCccc--ccCccc
Q psy9363         324 GHIHTLTLGNM--GYIWADILKLLANFPV-TCLKLPSNRITTLDS--VPGMFSSLEELYLQENNIVDWGEVN--ALGSLP  396 (421)
Q Consensus       324 ~~L~~L~Ls~N--~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~--~l~~l~  396 (421)
                      ++|+.|.+|.|  ++. ....-.....|+ ++|+|++|+|..+..  +...+.+|..|++.+|.........  .+..+|
T Consensus        65 p~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   65 PKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             chhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            78888888888  444 222333444588 888888888874332  2367778888888888765543221  244567


Q ss_pred             cccccccc
Q psy9363         397 NLKYLNLA  404 (421)
Q Consensus       397 ~L~~L~Ls  404 (421)
                      +|+.||-.
T Consensus       144 ~L~~LD~~  151 (260)
T KOG2739|consen  144 SLKYLDGC  151 (260)
T ss_pred             hhcccccc
Confidence            77766543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.96  E-value=0.0022  Score=59.14  Aligned_cols=89  Identities=15%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             hcCCCCCccEEEeeCcccc-hh-h-HHHHhccCCC-cEEEccCCcCcc--cCCC---C--CCCCCCcEEECcCCCCCCCC
Q psy9363         319 QIFPQGHIHTLTLGNMGYI-WA-D-ILKLLANFPV-TCLKLPSNRITT--LDSV---P--GMFSSLEELYLQENNIVDWG  387 (421)
Q Consensus       319 ~~l~~~~L~~L~Ls~N~l~-~~-~-i~~~~~~l~~-~~L~L~~N~l~~--l~~~---~--~~l~~L~~L~Ls~N~l~~~~  387 (421)
                      ..+  ++|..|||..|-|+ .+ . .......|+. ++|.+..+-++.  ....   +  ...++|..|-..+|..... 
T Consensus       211 ~y~--~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~-  287 (388)
T COG5238         211 FYS--HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG-  287 (388)
T ss_pred             HHh--CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCc-
Confidence            355  78888899888888 22 1 2234456777 888888888763  1110   1  4567888888888887433 


Q ss_pred             cccc-------cCccccccccccccccCcc
Q psy9363         388 EVNA-------LGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       388 ~~~~-------l~~l~~L~~L~Ls~N~l~~  410 (421)
                      .+..       -..+|-|..|-+.+|+|+.
T Consensus       288 ~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         288 IILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             eeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            2322       1357888888889998875

>KOG0532|consensus

Probab=96.95  E-value=9.4e-05  Score=74.18  Aligned_cols=94  Identities=19%  Similarity=0.248  Sum_probs=49.1

Q ss_pred             CchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCCcEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCC-----
Q psy9363         314 SGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWG-----  387 (421)
Q Consensus       314 ~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~-----  387 (421)
                      +|..+..+  ..|++|+|+.|.++ .+   .-+..+|-+.|-+++|+++.+|.+++...+|..||.+.|.+.+.+     
T Consensus       113 ip~~i~~L--~~lt~l~ls~NqlS~lp---~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~  187 (722)
T KOG0532|consen  113 IPEAICNL--EALTFLDLSSNQLSHLP---DGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY  187 (722)
T ss_pred             cchhhhhh--hHHHHhhhccchhhcCC---hhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhh
Confidence            44445555  55555555555555 21   112222335555555555555555555555555555555554432     


Q ss_pred             ----------------cccccCccccccccccccccCcccCC
Q psy9363         388 ----------------EVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       388 ----------------~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                                      .+..+..| .|..||+|.|+++.||+
T Consensus       188 l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv  228 (722)
T KOG0532|consen  188 LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPV  228 (722)
T ss_pred             HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecch
Confidence                            01233333 46777888888876654

>KOG3763|consensus

Probab=96.93  E-value=0.00091  Score=67.11  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=65.6

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY   95 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~   95 (421)
                      .+..+.+..++|++|++-+++.+..+...-|+|+.|+|+|+.+....                    .+.+++.     +
T Consensus       214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~--------------------~~el~K~-----k  268 (585)
T KOG3763|consen  214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISS--------------------ESELDKL-----K  268 (585)
T ss_pred             hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcc--------------------hhhhhhh-----c
Confidence            34456677777777777777777666666666666666432110000                    1122322     5


Q ss_pred             CCCCceeeecCCCCCCccc-cchhHHHHHHhccCceeccCCccChh
Q psy9363          96 LPKLSSLRFTKNPILAEER-VVSSREKTIARLGGLKLLNGSAIERQ  140 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~ln~s~i~~~  140 (421)
                      ...|+.|-|.|||++.... ...|...+...+|+|..||+-.+.++
T Consensus       269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LDG~ev~~~  314 (585)
T KOG3763|consen  269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLDGVEVQPE  314 (585)
T ss_pred             CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeecCcccCcc
Confidence            6788999999999988754 23455577889999999999877663

>KOG0532|consensus

Probab=96.63  E-value=0.00038  Score=69.96  Aligned_cols=92  Identities=22%  Similarity=0.300  Sum_probs=66.9

Q ss_pred             CChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhh
Q psy9363          10 KTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVK   88 (421)
Q Consensus        10 ~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~   88 (421)
                      ..|.+|+ ..++|..||.|.|.|.   .++..++.+.+|+.|++ +|++.  .+|...+ .=.|..||+++|.++--+..
T Consensus       157 ~lp~~ig-~~~tl~~ld~s~nei~---slpsql~~l~slr~l~vrRn~l~--~lp~El~-~LpLi~lDfScNkis~iPv~  229 (722)
T KOG0532|consen  157 SLPEEIG-LLPTLAHLDVSKNEIQ---SLPSQLGYLTSLRDLNVRRNHLE--DLPEELC-SLPLIRLDFSCNKISYLPVD  229 (722)
T ss_pred             cCCcccc-cchhHHHhhhhhhhhh---hchHHhhhHHHHHHHHHhhhhhh--hCCHHHh-CCceeeeecccCceeecchh
Confidence            3466677 6788888888888886   45777788888888888 58887  4666655 45677888877765333333


Q ss_pred             HHHHHhhCCCCceeeecCCCCCCc
Q psy9363          89 EGSLLHYLPKLSSLRFTKNPILAE  112 (421)
Q Consensus        89 ~~~ll~~l~~L~~L~l~~N~l~~~  112 (421)
                          +.+|..|++|-|..||+...
T Consensus       230 ----fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  230 ----FRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             ----hhhhhhheeeeeccCCCCCC
Confidence                56788899999999998543

>KOG4658|consensus

Probab=96.59  E-value=0.0017  Score=70.80  Aligned_cols=82  Identities=26%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccC--CCCCCCCCCcEEECcCCCCCCCCc--ccccCccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLD--SVPGMFSSLEELYLQENNIVDWGE--VNALGSLPNL  398 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~--~~~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~l~~L  398 (421)
                      ++|+.|.+..+..- ..+......+.. ..+-+..+.+..++  ...+.++++..+.+++=.+..|..  .+.++.+|.+
T Consensus       770 ~~L~~l~l~~~~~~-e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve~~p~l~~~P~~  848 (889)
T KOG4658|consen  770 PHLTSLSLVSCRLL-EDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVEECPKLGKLPLL  848 (889)
T ss_pred             CcccEEEEeccccc-ccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehhcCcccccCccc
Confidence            78888888776654 222222223333 44555566665442  223566666666665555555431  1234567777


Q ss_pred             cccccccc
Q psy9363         399 KYLNLAST  406 (421)
Q Consensus       399 ~~L~Ls~N  406 (421)
                      .++...++
T Consensus       849 ~~~~i~~~  856 (889)
T KOG4658|consen  849 STLTIVGC  856 (889)
T ss_pred             cccceecc
Confidence            77777765

>KOG3556|consensus

Probab=96.51  E-value=0.007  Score=59.88  Aligned_cols=66  Identities=30%  Similarity=0.541  Sum_probs=53.0

Q ss_pred             CCCCceEEeec------CceeEEEEecccCCCCCcEEEEEecCCC----CCCCCCeeCCEEeEecCCCCceeEEecCc
Q psy9363         183 DDIGLRVCDSE------GHRGTIRYVGSVEGTQGVWYGIDWDSET----RGKHDGSHNGVKYFWTHSTTSGSFMRRDK  250 (421)
Q Consensus       183 ~~i~~rv~~l~------~~~~~~r~~G~ip~~~g~~~gle~d~~~----~g~~~G~~~g~~~f~~~~~~~gsf~~~~~  250 (421)
                      +.+|+.+. +.      .-.|.+||+|.-|+..+.|+|+|+++.+    .+..+|+..|.|+|+|. .+-+.|+...+
T Consensus       236 L~IGslve-V~np~~~~~~ygvVrWIG~pP~~~~Vl~gve~edet~~~~~~~~dgs~~g~Rlftc~-d~~a~Fv~~~s  311 (724)
T KOG3556|consen  236 LKIGSLVE-VENPETMRRVYGVVRWIGEPPEASGVLYGVEFEDETSQWPSSNQDGSSSGDRLFTCF-DTNANFVMSGS  311 (724)
T ss_pred             ceecceEE-ecCCccccccceeeEecccCCcccCceEeeeecCccccCccccccCcccCceeeeec-cccceeeEcCC
Confidence            45666655 43      3589999999999999999999999866    57789999999999997 55666666554

>KOG3665|consensus

Probab=96.39  E-value=0.0021  Score=68.39  Aligned_cols=81  Identities=19%  Similarity=0.315  Sum_probs=39.7

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN  402 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  402 (421)
                      |+|+.|.+++=.+.-.+....+..||+ ..||+|+-.++.+. .++.+++|++|.+.+=.+++..+...+-+|++|+.||
T Consensus       148 PsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLD  226 (699)
T KOG3665|consen  148 PSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLD  226 (699)
T ss_pred             cccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeee
Confidence            666666666655542334455666666 66666666665442 2334444444444443333333333333444444444


Q ss_pred             ccc
Q psy9363         403 LAS  405 (421)
Q Consensus       403 Ls~  405 (421)
                      +|.
T Consensus       227 IS~  229 (699)
T KOG3665|consen  227 ISR  229 (699)
T ss_pred             ccc
Confidence            443

>KOG2120|consensus

Probab=96.36  E-value=0.00061  Score=63.43  Aligned_cols=113  Identities=19%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             hHHhhhCCCCcEEECC-CCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCccc-ccccccchhccccc---cCCcch
Q psy9363          13 DEIEQAVPFIEDLDLS-RNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHS-YLAEVVFFVHLGRT---LCDEDF   86 (421)
Q Consensus        13 ~~~~~~~~~L~~L~Ls-~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~-~~~~~L~~L~L~~~---~~~~~~   86 (421)
                      .+|++. .+|+.|||| .|.|+. .++.-+++++++|..|+|+ ..+....+-..+ -.-++|+.|+|+.+   +...  
T Consensus       228 ~~iAkN-~~L~~lnlsm~sG~t~-n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~s--  303 (419)
T KOG2120|consen  228 NTIAKN-SNLVRLNLSMCSGFTE-NALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKS--  303 (419)
T ss_pred             HHHhcc-ccceeeccccccccch-hHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhh--
Confidence            345543 578888887 445775 3556667777778777775 433311111000 01245666666532   2222  


Q ss_pred             hhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          87 VKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        87 ~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                       .+.-+.+++|+|.+|||++|--...     -...++-+++.|++|.++
T Consensus       304 -h~~tL~~rcp~l~~LDLSD~v~l~~-----~~~~~~~kf~~L~~lSls  346 (419)
T KOG2120|consen  304 -HLSTLVRRCPNLVHLDLSDSVMLKN-----DCFQEFFKFNYLQHLSLS  346 (419)
T ss_pred             -HHHHHHHhCCceeeeccccccccCc-----hHHHHHHhcchheeeehh
Confidence             2222355677777777776653221     123445566666666554

>KOG4658|consensus

Probab=95.76  E-value=0.0068  Score=66.27  Aligned_cols=88  Identities=25%  Similarity=0.258  Sum_probs=41.5

Q ss_pred             HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHH
Q psy9363          14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSL   92 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~l   92 (421)
                      ++...+|.|+.||||+|.=  ...+|..++.|-+|+.|+| ...++  .+|..++++..|.+|++..+..-..++.+   
T Consensus       565 ~ff~~m~~LrVLDLs~~~~--l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i---  637 (889)
T KOG4658|consen  565 EFFRSLPLLRVLDLSGNSS--LSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPGI---  637 (889)
T ss_pred             HHHhhCcceEEEECCCCCc--cCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccch---
Confidence            3344455555555555431  1244555555555555555 24444  34555555555555555433211111222   


Q ss_pred             HhhCCCCceeeecCCC
Q psy9363          93 LHYLPKLSSLRFTKNP  108 (421)
Q Consensus        93 l~~l~~L~~L~l~~N~  108 (421)
                      ...+++|++|.+..-.
T Consensus       638 ~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  638 LLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhhcccccEEEeeccc
Confidence            3345666666555443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=95.67  E-value=0.049  Score=50.47  Aligned_cols=121  Identities=20%  Similarity=0.152  Sum_probs=80.3

Q ss_pred             hCCCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeecc-cccCC---CCCC---------cccccccccchhccccccC
Q psy9363          18 AVPFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNLR-IRLKS---SSAP---------AHSYLAEVVFFVHLGRTLC   82 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L~-N~l~~---~~~p---------~~~~~~~~L~~L~L~~~~~   82 (421)
                      .||+|+..|||+|.|+.  .+.+...+++-+.|+.|.|+ |.+..   +.+.         .-...-+.|++..-+.|.+
T Consensus        90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238          90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            59999999999999885  34566778888999999995 65552   1111         0112345677777766644


Q ss_pred             -CcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363          83 -DEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        83 -~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                       +|+-.....++..-.+|+.+.+..|-|-... ........+.++.+|++||+...+.
T Consensus       170 engs~~~~a~~l~sh~~lk~vki~qNgIrpeg-v~~L~~~gl~y~~~LevLDlqDNtf  226 (388)
T COG5238         170 ENGSKELSAALLESHENLKEVKIQQNGIRPEG-VTMLAFLGLFYSHSLEVLDLQDNTF  226 (388)
T ss_pred             ccCcHHHHHHHHHhhcCceeEEeeecCcCcch-hHHHHHHHHHHhCcceeeeccccch
Confidence             3443223333555679999999999874321 1222335678889999999986654

>KOG3763|consensus

Probab=93.89  E-value=0.029  Score=56.63  Aligned_cols=59  Identities=27%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCC--cCcccCCCC--CCCCCCcEEECcCCCC
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSN--RITTLDSVP--GMFSSLEELYLQENNI  383 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N--~l~~l~~~~--~~l~~L~~L~Ls~N~l  383 (421)
                      +.+..++|++|++. ...+..+....|+ ..|+|++|  .+..-+ ++  .....|++|.|.+|.+
T Consensus       218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPl  282 (585)
T KOG3763|consen  218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPL  282 (585)
T ss_pred             cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCcc
Confidence            55556666666665 4455555555555 66666666  332211 11  2233455566666665

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.73  E-value=0.025  Score=29.13  Aligned_cols=14  Identities=36%  Similarity=0.627  Sum_probs=5.4

Q ss_pred             cccccccccccCcc
Q psy9363         397 NLKYLNLASTNLRN  410 (421)
Q Consensus       397 ~L~~L~Ls~N~l~~  410 (421)
                      +|+.|+|++|+|+.
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34455555555443

...

>KOG0241|consensus

Probab=93.09  E-value=0.1  Score=55.61  Aligned_cols=66  Identities=30%  Similarity=0.421  Sum_probs=50.2

Q ss_pred             CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         183 DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       183 ~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      ...|.++....-.-+.+||+|....-.    |+|.|++. |+++|+..|++||.|. |+.|.+++.+++...
T Consensus      1631 ~~~ge~v~~~~h~t~v~r~vg~tefq~----gveld~p~-gkndgs~gg~qyfrc~-p~~g~~vr~s~~~~~ 1696 (1714)
T KOG0241|consen 1631 RGFGERVVTVEHTTNVLRDVGFTEFQG----GVELDDPD-GKNDGSAGGLQYFRCL-PNKGGGVRVSDGLHH 1696 (1714)
T ss_pred             hhcCceeEEeecccceeeecchhhccC----cccccCCC-CCcCccccceeEEeec-CCCCCcccchhhccC
Confidence            335556542223556788888775433    89999998 9999999999999998 899999999887433

>KOG4568|consensus

Probab=92.89  E-value=0.033  Score=58.38  Aligned_cols=69  Identities=33%  Similarity=0.566  Sum_probs=59.7

Q ss_pred             cCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         182 EDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       182 ~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ...+++|+..-+...++.||.|..-++.|.|.|++.|++. |+.+|++.+.+||.|. +.++.|....++.
T Consensus       154 ~l~v~dr~l~~gq~~~~~r~~~~t~fa~g~w~~~elde~~-~~~d~sv~k~~~~~~k-~ky~~f~~v~kv~  222 (664)
T KOG4568|consen  154 GLRVGDRVLVGGQKSGTLRYSGHTKFASGSWLGVELDEPV-GKNDGSVGKVRYFQCK-PKYGKFAPVQKVF  222 (664)
T ss_pred             ccccccceeecCcccchhhhhccccccCCcccchhccccc-ccccccccccccccCc-chhcchhHHHHHh
Confidence            3778888772235899999999999999999999999999 9999999999999997 7888888777663

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.82  E-value=0.064  Score=27.60  Aligned_cols=15  Identities=53%  Similarity=0.696  Sum_probs=9.2

Q ss_pred             CCCcEEECCCCCCCC
Q psy9363          20 PFIEDLDLSRNLLAS   34 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~   34 (421)
                      ++|+.|+|++|.|++
T Consensus         1 ~~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTS   15 (17)
T ss_dssp             TT-SEEEETSS--SS
T ss_pred             CccCEEECCCCCCCC
Confidence            468888888888764

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.56  E-value=0.11  Score=29.13  Aligned_cols=16  Identities=44%  Similarity=0.625  Sum_probs=11.6

Q ss_pred             CCCCcEEECCCCCCCC
Q psy9363          19 VPFIEDLDLSRNLLAS   34 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~   34 (421)
                      |++|++|||++|.|++
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            5789999999999984

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=91.12  E-value=0.13  Score=28.31  Aligned_cols=11  Identities=55%  Similarity=0.603  Sum_probs=4.8

Q ss_pred             CcEEECcCCCC
Q psy9363         373 LEELYLQENNI  383 (421)
Q Consensus       373 L~~L~Ls~N~l  383 (421)
                      |++|||++|+|
T Consensus         2 L~~Ldls~n~l   12 (22)
T PF00560_consen    2 LEYLDLSGNNL   12 (22)
T ss_dssp             ESEEEETSSEE
T ss_pred             ccEEECCCCcC
Confidence            34444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=90.79  E-value=0.15  Score=29.50  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=15.9

Q ss_pred             CCCCcEEECCCCCCCChhhH
Q psy9363          19 VPFIEDLDLSRNLLASWFAV   38 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i   38 (421)
                      +.+|++|+|++|.|++++.+
T Consensus         1 L~~L~~L~L~~NkI~~IEnL   20 (26)
T smart00365        1 LTNLEELDLSQNKIKKIENL   20 (26)
T ss_pred             CCccCEEECCCCccceecCc
Confidence            35889999999999876554

>PRK15386 type III secretion protein GogB; Provisional

Probab=90.49  E-value=0.44  Score=47.45  Aligned_cols=91  Identities=15%  Similarity=0.193  Sum_probs=47.3

Q ss_pred             CCCccCCCC-CCCchhhhcCCCCCccEEEeeCc-ccchhhHHHHhccCCC--cEEEccCCcC---cccCCCCCC------
Q psy9363         303 NTNKLPIPN-DTSGVMEQIFPQGHIHTLTLGNM-GYIWADILKLLANFPV--TCLKLPSNRI---TTLDSVPGM------  369 (421)
Q Consensus       303 ~L~~l~l~~-~~~~~~~~~l~~~~L~~L~Ls~N-~l~~~~i~~~~~~l~~--~~L~L~~N~l---~~l~~~~~~------  369 (421)
                      +|+.|.+.+ ..+......++ ++|+.|++++| .+.         .+|.  +.|+++.|.+   ..+|..+..      
T Consensus        73 sLtsL~Lsnc~nLtsLP~~LP-~nLe~L~Ls~Cs~L~---------sLP~sLe~L~L~~n~~~~L~~LPssLk~L~I~~~  142 (426)
T PRK15386         73 ELTEITIENCNNLTTLPGSIP-EGLEKLTVCHCPEIS---------GLPESVRSLEIKGSATDSIKNVPNGLTSLSINSY  142 (426)
T ss_pred             CCcEEEccCCCCcccCCchhh-hhhhheEccCccccc---------ccccccceEEeCCCCCcccccCcchHhheecccc
Confidence            667777664 11111111221 57888888877 443         1222  5666666553   334432211      


Q ss_pred             -----------C-CCCcEEECcCCCCCCCCcccccCcccccccccccccc
Q psy9363         370 -----------F-SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN  407 (421)
Q Consensus       370 -----------l-~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~  407 (421)
                                 + ++|+.|++++|.....+  ..+  -.+|+.|+++.|.
T Consensus       143 n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP--~~L--P~SLk~L~ls~n~  188 (426)
T PRK15386        143 NPENQARIDNLISPSLKTLSLTGCSNIILP--EKL--PESLQSITLHIEQ  188 (426)
T ss_pred             ccccccccccccCCcccEEEecCCCcccCc--ccc--cccCcEEEecccc
Confidence                       1 36777777776653221  122  1478888887764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=89.29  E-value=0.2  Score=28.69  Aligned_cols=18  Identities=39%  Similarity=0.735  Sum_probs=12.6

Q ss_pred             cccccccccccccCcccC
Q psy9363         395 LPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       395 l~~L~~L~Ls~N~l~~i~  412 (421)
                      +++|++|+|++|+|+.|+
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            356777777777777664

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=89.29  E-value=0.2  Score=28.69  Aligned_cols=18  Identities=39%  Similarity=0.735  Sum_probs=12.6

Q ss_pred             cccccccccccccCcccC
Q psy9363         395 LPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       395 l~~L~~L~Ls~N~l~~i~  412 (421)
                      +++|++|+|++|+|+.|+
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            356777777777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=89.10  E-value=0.53  Score=46.87  Aligned_cols=43  Identities=19%  Similarity=0.226  Sum_probs=23.1

Q ss_pred             cEEEccCC-cCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcc-cccccccccc
Q psy9363         351 TCLKLPSN-RITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLAS  405 (421)
Q Consensus       351 ~~L~L~~N-~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l-~~L~~L~Ls~  405 (421)
                      +.|++++| .+..+|.      +|+.|+++.|.+..      +..+ ++|+.|.+.+
T Consensus        97 e~L~Ls~Cs~L~sLP~------sLe~L~L~~n~~~~------L~~LPssLk~L~I~~  141 (426)
T PRK15386         97 EKLTVCHCPEISGLPE------SVRSLEIKGSATDS------IKNVPNGLTSLSINS  141 (426)
T ss_pred             hheEccCccccccccc------ccceEEeCCCCCcc------cccCcchHhheeccc
Confidence            66666665 4444442      46666666555433      2233 3567777643

>KOG1947|consensus

Probab=88.36  E-value=0.55  Score=47.64  Aligned_cols=113  Identities=15%  Similarity=0.143  Sum_probs=52.2

Q ss_pred             hhhCCCCcEEECCCCC-CCChhhHHHHHhcCCCCceeecc-c--ccCCCC--CCcccccccccchhcccccc-CCcchhh
Q psy9363          16 EQAVPFIEDLDLSRNL-LASWFAVGEITCQLKHLRHLNLR-I--RLKSSS--APAHSYLAEVVFFVHLGRTL-CDEDFVK   88 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~-ls~~~~i~~~~~~l~~L~~L~L~-N--~l~~~~--~p~~~~~~~~L~~L~L~~~~-~~~~~~~   88 (421)
                      ...++.|+.|.++... +.+. .+.++....+.|+.|+++ .  ......  .......+.+|+.|+|+.+. ++..  .
T Consensus       184 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~--~  260 (482)
T KOG1947|consen  184 LSSCPLLKRLSLSGCSKITDD-SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI--G  260 (482)
T ss_pred             HhhCchhhHhhhcccccCChh-hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch--h
Confidence            3446666666666553 4432 244555566666666663 1  111000  11122234566666665443 2111  1


Q ss_pred             HHHHHhhCCCCceeeecCCC-CCCccccchhHHHHHHhccCceeccCCc
Q psy9363          89 EGSLLHYLPKLSSLRFTKNP-ILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        89 ~~~ll~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      +..+...+++|++|.+...+ +++     .....+..+++.|+.|+++.
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~lt~-----~gl~~i~~~~~~L~~L~l~~  304 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSNLTD-----EGLVSIAERCPSLRELDLSG  304 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCccch-----hHHHHHHHhcCcccEEeeec
Confidence            22213346666666655444 221     22334455566666666653

>KOG4308|consensus

Probab=87.94  E-value=0.096  Score=53.49  Aligned_cols=133  Identities=22%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             CccCcCCC--ChhHHhhhCCCCcEEECCCCCCCChhh--HHHHHhc----CCCCceeec-ccccCCCC---CCccccccc
Q psy9363           3 SRVSNAGK--THDEIEQAVPFIEDLDLSRNLLASWFA--VGEITCQ----LKHLRHLNL-RIRLKSSS---APAHSYLAE   70 (421)
Q Consensus         3 ~~i~~~g~--~~~~~~~~~~~L~~L~Ls~N~ls~~~~--i~~~~~~----l~~L~~L~L-~N~l~~~~---~p~~~~~~~   70 (421)
                      |.+...|.  ..+.+.. ++.++++|++.|.+..++.  ++..+.+    ..++++|++ ++.++...   +...+...+
T Consensus       154 c~l~~~g~~~l~~~L~~-~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~  232 (478)
T KOG4308|consen  154 CSLTSEGAAPLAAVLEK-NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGE  232 (478)
T ss_pred             ccccccchHHHHHHHhc-ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccc
Confidence            44444453  3334444 7889999999999876653  3344443    667899999 56665211   011122333


Q ss_pred             c-cchhccccccCCcc-hhhHHHHHhhC-CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          71 V-VFFVHLGRTLCDED-FVKEGSLLHYL-PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        71 ~-L~~L~L~~~~~~~~-~~~~~~ll~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      . +..|++.+|.+.+. ...+...+..+ +.++.++++.|.|.+..  ......++..+++++.+.+...+
T Consensus       233 ~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~--~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  233 SLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKG--VRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             hhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccc--hHHHHHHHhhhHHHHHhhcccCc
Confidence            4 67788888877333 33333334455 67799999999997664  33344567777788888877543

>smart00446 LRRcap occurring C-terminal to leucine-rich repeats

Probab=87.68  E-value=0.4  Score=27.62  Aligned_cols=21  Identities=33%  Similarity=0.352  Sum_probs=18.7

Q ss_pred             chhHHHHHHhccCceeccCCc
Q psy9363         116 VSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus       116 ~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      ++||..+|+.+|+|++||...
T Consensus         2 ~~YR~~Vi~~LPqL~~LD~~~   22 (26)
T smart00446        2 AHYREKVIRLLPQLRKLDXXX   22 (26)
T ss_pred             ccHHHHHHHHCCccceecccc
Confidence            578999999999999999853

A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=87.53  E-value=0.5  Score=26.99  Aligned_cols=18  Identities=28%  Similarity=0.410  Sum_probs=12.5

Q ss_pred             CCCCcEEECcCCCCCCCC
Q psy9363         370 FSSLEELYLQENNIVDWG  387 (421)
Q Consensus       370 l~~L~~L~Ls~N~l~~~~  387 (421)
                      +++|+.|+|++|+|+.++
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            356777777777776654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=87.53  E-value=0.5  Score=26.99  Aligned_cols=18  Identities=28%  Similarity=0.410  Sum_probs=12.5

Q ss_pred             CCCCcEEECcCCCCCCCC
Q psy9363         370 FSSLEELYLQENNIVDWG  387 (421)
Q Consensus       370 l~~L~~L~Ls~N~l~~~~  387 (421)
                      +++|+.|+|++|+|+.++
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            356777777777776654

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.99  E-value=0.89  Score=26.62  Aligned_cols=15  Identities=47%  Similarity=0.725  Sum_probs=13.5

Q ss_pred             CCCcEEECCCCCCCC
Q psy9363          20 PFIEDLDLSRNLLAS   34 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~   34 (421)
                      ++|++|||++|.|.+
T Consensus         2 ~~L~~LdL~~N~i~~   16 (28)
T smart00368        2 PSLRELDLSNNKLGD   16 (28)
T ss_pred             CccCEEECCCCCCCH
Confidence            579999999999986

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=83.83  E-value=0.86  Score=26.30  Aligned_cols=16  Identities=44%  Similarity=0.549  Sum_probs=10.8

Q ss_pred             CCCcEEECcCCCCCCC
Q psy9363         371 SSLEELYLQENNIVDW  386 (421)
Q Consensus       371 ~~L~~L~Ls~N~l~~~  386 (421)
                      .+|+.|+|++|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4677777777777554

>KOG0473|consensus

Probab=83.79  E-value=0.11  Score=47.16  Aligned_cols=90  Identities=18%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             hHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhHHH
Q psy9363          13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGS   91 (421)
Q Consensus        13 ~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~   91 (421)
                      .+|. .+...+.||+|.|++-..+.-..   -++.|..|+++ |.+.  ..|...+....++.+++.+|..+-.+. .  
T Consensus        36 ~ei~-~~kr~tvld~~s~r~vn~~~n~s---~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~~~p~-s--  106 (326)
T KOG0473|consen   36 REIA-SFKRVTVLDLSSNRLVNLGKNFS---ILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHSQQPK-S--  106 (326)
T ss_pred             hhhh-ccceeeeehhhhhHHHhhccchH---HHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchhhCCc-c--
Confidence            4555 57889999999999986654444   36788889996 8776  567777777788889996544422222 2  


Q ss_pred             HHhhCCCCceeeecCCCCCCc
Q psy9363          92 LLHYLPKLSSLRFTKNPILAE  112 (421)
Q Consensus        92 ll~~l~~L~~L~l~~N~l~~~  112 (421)
                       .++.|.++++++.+||++..
T Consensus       107 -~~k~~~~k~~e~k~~~~~~~  126 (326)
T KOG0473|consen  107 -QKKEPHPKKNEQKKTEFFRK  126 (326)
T ss_pred             -ccccCCcchhhhccCcchHH
Confidence             67899999999999998544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=83.20  E-value=2.6  Score=34.21  Aligned_cols=80  Identities=16%  Similarity=0.311  Sum_probs=39.4

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      .+..+  ++|+.+.+..+ +. ++.  ..+...+. +.+.+.+ .+..++... ..+++|+.+++..+ +..++ ...+.
T Consensus        30 ~F~~~--~~l~~i~~~~~-~~~i~~--~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~-~~~f~  101 (129)
T PF13306_consen   30 AFSNC--TSLKSINFPNN-LTSIGD--NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIG-SSSFS  101 (129)
T ss_dssp             TTTT---TT-SEEEESST-TSCE-T--TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEH-TTTTT
T ss_pred             hcccc--ccccccccccc-ccccce--eeeecccccccccccc-cccccccccccccccccccccCcc-ccEEc-hhhhc
Confidence            45566  67777777665 43 332  34555556 7777754 555454433 55677777777665 43433 33555


Q ss_pred             cccccccccccc
Q psy9363         394 SLPNLKYLNLAS  405 (421)
Q Consensus       394 ~l~~L~~L~Ls~  405 (421)
                      +. +|+.+.+..
T Consensus       102 ~~-~l~~i~~~~  112 (129)
T PF13306_consen  102 NC-NLKEINIPS  112 (129)
T ss_dssp             T--T--EEE-TT
T ss_pred             CC-CceEEEECC
Confidence            55 666666654

>KOG1947|consensus

Probab=82.83  E-value=1.4  Score=44.55  Aligned_cols=118  Identities=17%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             hhHHhhhCCCCcEEECCCC--CCCChh-hHHHHHhcCCCCceeecc--cccCCCCCCcccccccccchhcccccc-CCcc
Q psy9363          12 HDEIEQAVPFIEDLDLSRN--LLASWF-AVGEITCQLKHLRHLNLR--IRLKSSSAPAHSYLAEVVFFVHLGRTL-CDED   85 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N--~ls~~~-~i~~~~~~l~~L~~L~L~--N~l~~~~~p~~~~~~~~L~~L~L~~~~-~~~~   85 (421)
                      -..+...|+.|++|+++.+  .+...+ ........+++|+.|+++  ..++...+......+++|++|.+.+|. ++. 
T Consensus       206 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~-  284 (482)
T KOG1947|consen  206 LDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTD-  284 (482)
T ss_pred             HHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccch-
Confidence            3467788999999999873  222222 123345567889999993  334422222222347899999987776 322 


Q ss_pred             hhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          86 FVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        86 ~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                       ..+..+..+++.|++|+++++.....   .+.... ...+++|+.|...
T Consensus       285 -~gl~~i~~~~~~L~~L~l~~c~~~~d---~~l~~~-~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  285 -EGLVSIAERCPSLRELDLSGCHGLTD---SGLEAL-LKNCPNLRELKLL  329 (482)
T ss_pred             -hHHHHHHHhcCcccEEeeecCccchH---HHHHHH-HHhCcchhhhhhh
Confidence             24444466899999999998876422   233334 4457777765543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=81.34  E-value=2.3  Score=34.50  Aligned_cols=86  Identities=20%  Similarity=0.322  Sum_probs=51.9

Q ss_pred             hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccccc
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      ..|..+  ++|+.+.+.. .+. .+.  ..+..++. +.+.+.++ +..++... ..+++|+.+.+.+ .+..++ ...+
T Consensus         6 ~~F~~~--~~l~~i~~~~-~~~~I~~--~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~-~~~F   77 (129)
T PF13306_consen    6 NAFYNC--SNLESITFPN-TIKKIGE--NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG-DNAF   77 (129)
T ss_dssp             TTTTT---TT--EEEETS-T--EE-T--TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTT
T ss_pred             HHHhCC--CCCCEEEECC-CeeEeCh--hhccccccccccccccc-ccccceeeeecccccccccccc-cccccc-cccc
Confidence            346677  8999999975 454 333  45666777 99999886 77777654 6777899999976 444544 3467


Q ss_pred             CccccccccccccccCcc
Q psy9363         393 GSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~  410 (421)
                      ..+++|+.+++..+ +..
T Consensus        78 ~~~~~l~~i~~~~~-~~~   94 (129)
T PF13306_consen   78 SNCTNLKNIDIPSN-ITE   94 (129)
T ss_dssp             TT-TTECEEEETTT--BE
T ss_pred             cccccccccccCcc-ccE
Confidence            77888988888765 443

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.11  E-value=0.89  Score=26.19  Aligned_cols=16  Identities=38%  Similarity=0.694  Sum_probs=10.2

Q ss_pred             ccccccccccccCccc
Q psy9363         396 PNLKYLNLASTNLRNI  411 (421)
Q Consensus       396 ~~L~~L~Ls~N~l~~i  411 (421)
                      ++|+.|++++|+|+.+
T Consensus         2 ~~L~~L~vs~N~Lt~L   17 (26)
T smart00364        2 PSLKELNVSNNQLTSL   17 (26)
T ss_pred             cccceeecCCCccccC
Confidence            3566677777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	421
1whg_A	113	Solution Structure Of The Cap-Gly Domain In Mouse T		3e-06
1txq_A	93	Crystal Structure Of The Eb1 C-Terminal Domain Comp		8e-06
2hkn_A	97	Crystal Structure Of The Cap-Gly Domain Of Human Dy		9e-06
2coy_A	112	Solution Structure Of The Cap-Gly Domain In Human D		9e-06
3tq7_P	71	Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Do		1e-05
2hl3_A	97	Crystal Structure Of The A49m Mutant Cap-Gly Domain		2e-05
1whh_A	102	Solution Structure Of The 2nd Cap-Gly Domain In Mou		2e-05
2cp0_A	95	Solution Structure Of The 1st Cap-Gly Domain In Hum		2e-05
1lpl_A	95	Structural Genomics Of Caenorhabditis Elegans: Cap-		7e-05
1tov_A	98	Structural Genomics Of Caenorhabditis Elegans: Cap-		8e-05
2z0w_A	96	Crystal Structure Of The 2nd Cap-Gly Domain In Huma		4e-04

>pdb|1WHG|A Chain A, Solution Structure Of The Cap-Gly Domain In Mouse Tubulin Specific Chaperone B Length = 113

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 159 DEKRRAEFLEANPRVGDNYFQVMEDDIG----LRVCDSEGHRGTIRYVGSVEGTQGVWYG 214
           +E R  +  EA  R+ +   Q     +G    +R  D    RGT+ YVG  +   G W G
Sbjct: 9   EELRAQQEAEAAQRLSEEKAQASAISVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVG 68
Query: 215 IDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256
           + +D E  GK+DGS NG +YF   +   G+F++   +  G S
Sbjct: 69  VRYD-EPLGKNDGSVNGKRYFECQAKY-GAFVKPSAVTVGDS 108

>pdb|1TXQ|A Chain A, Crystal Structure Of The Eb1 C-Terminal Domain Complexed With The Cap-Gly Domain Of P150glued Length = 93

Iteration: 1
 Score = 48.5 bits (114), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
           +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF T     G F+R+ ++
Sbjct: 24  KGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 80

>pdb|2HKN|A Chain A, Crystal Structure Of The Cap-Gly Domain Of Human Dynactin-1 (P150- Glued) Length = 97

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
           +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF T     G F+R+ ++
Sbjct: 24  KGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 80

>pdb|2COY|A Chain A, Solution Structure Of The Cap-Gly Domain In Human Dynactin 1 Length = 112

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
           +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF T     G F+R+ ++
Sbjct: 45  KGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 101

>pdb|3TQ7|P Chain P, Eb1cEB3C HETERODIMER IN COMPLEX WITH THE CAP-Gly Domain Of P150glued Length = 71

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
           +GHRGT+ YVG      G W G+  D E +GK+DG+  G KYF T     G F+R+ ++
Sbjct: 12  KGHRGTVAYVGMTLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 68

>pdb|2HL3|A Chain A, Crystal Structure Of The A49m Mutant Cap-Gly Domain Of Human Dynactin-1 (P150-Glued) In Complex With Human Eb1 C- Terminal Hexapeptide Length = 97

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 193 EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL 251
           +GHRGT+ YVG      G W G+  D E +GK+DG+  G KYF T     G F+R+ ++
Sbjct: 24  KGHRGTVAYVGMTLFATGKWVGVILD-EAKGKNDGTVQGRKYF-TCDEGHGIFVRQSQI 80

>pdb|1WHH|A Chain A, Solution Structure Of The 2nd Cap-Gly Domain In Mouse Clip170-Related 59kda Protein Clipr-59 Length = 102

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 184 DIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
           ++G +V  +   +G +R+ G  +   G WYGI+ D  T GKHDGS  GV+YF
Sbjct: 27  EVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELDQPT-GKHDGSVFGVRYF 77

>pdb|2CP0|A Chain A, Solution Structure Of The 1st Cap-Gly Domain In Human Clip- 170-Related Protein Clipr59 Length = 95

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 180 VMEDDIGLRVCDS---EGHR-GTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
           +M   +GLR+ D    +G + GT+R+ G+ E   G W G++ D E  GK+DGS  GV+YF
Sbjct: 10  LMLSALGLRLGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELD-EPEGKNDGSVGGVRYF 68

>pdb|1LPL|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 95

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 196 RGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
           RG + YVG+ +  +GVW G+ +D E  GK+DGS  GV+YF
Sbjct: 29  RGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRYF 67

>pdb|1TOV|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domain Of F53f4.3 Length = 98

Iteration: 1
 Score = 45.1 bits (105), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 1/40 (2%)
Query: 196 RGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
           RG + YVG+ +  +GVW G+ +D E  GK+DGS  GV+YF
Sbjct: 32  RGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRYF 70

>pdb|2Z0W|A Chain A, Crystal Structure Of The 2nd Cap-Gly Domain In Human Restin- Like Protein 2 Reveals A Swapped-Dimer Length = 96

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYF 235
           +G RV       GTIR+ G+     G WYGI+ + +  GK+DGS  GV+YF
Sbjct: 13  LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELE-KPHGKNDGSVGGVQYF 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	421
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	7e-25
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	1e-23
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	2e-23
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	3e-23
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	5e-23
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	7e-23
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	7e-23
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	8e-23
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	9e-23
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	1e-22
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	2e-22
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	2e-22
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	3e-22
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	3e-22
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	4e-22
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	6e-22
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	1e-21
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	4e-21
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	3e-20
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	1e-18
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	9e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-07
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-04
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	8e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-04
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-06
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	8e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-05
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	7e-06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens} Length = 96

 Score = 96.7 bits (241), Expect = 7e-25
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV       GTIR+ G+     G WYGI+ + +  GK+DGS  GV+YF   S   G 
Sbjct: 13  LGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELE-KPHGKNDGSVGGVQYFSC-SPRYGI 70

Query: 245 FMRRDKLNFGSSFMEALHRKY 265
           F    ++   +  ++ L    
Sbjct: 71  FAPPSRVQRVTDSLDTLSEIS 91

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 141

 Score = 94.7 bits (235), Expect = 1e-23
 Identities = 32/118 (27%), Positives = 48/118 (40%), Gaps = 2/118 (1%)

Query: 139 RQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGT 198
           +  + GS            +++   +E   + P        V +  +G RV  +    G 
Sbjct: 21  KILKPGSTALKTPTAVVAPVEKTISSEKASSTPSSETQEEFVDDFRVGERVWVNGNKPGF 80

Query: 199 IRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256
           I+++G  +   G W GI  D E  GK+DGS  GV+YF       G F R  KL    S
Sbjct: 81  IQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGIFTRPSKLTRKVS 136

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 104

 Score = 92.9 bits (231), Expect = 2e-23
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 184 DIGLRVC--DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTT 241
           ++G      ++    G IR++G   G   V  G++ + E  G  DG+  G +YF      
Sbjct: 19  EVGSLAEVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCAL-K 77

Query: 242 SGSFMRRDKLNFGSSFME 259
              F++       S F  
Sbjct: 78  KALFVKLKSCRPDSRFAS 95

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 92.5 bits (230), Expect = 3e-23
 Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV       GT+R+ G+ E   G W G++ D E  GK+DGS  GV+YF       G 
Sbjct: 19  LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELD-EPEGKNDGSVGGVRYFICPP-KQGL 76

Query: 245 FMRRDKLNFGSS 256
           F    K++    
Sbjct: 77  FASVSKISKAVD 88

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100

 Score = 91.8 bits (228), Expect = 5e-23
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
            G  V       G +RYVG  +  +G W G++ D    GK+DGS  G +YF  +    G 
Sbjct: 26  EGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELD-LPSGKNDGSIGGKQYFRCNP-GYGL 83

Query: 245 FMRRDKLNFGSS 256
            +R  ++   +S
Sbjct: 84  LVRPSRVRRATS 95

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A Length = 90

 Score = 91.3 bits (227), Expect = 7e-23
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV       G +R++G  +  +G W G++ D E  GK+DG+  G +YF       G 
Sbjct: 4   IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCQP-KYGL 61

Query: 245 FMRRDKLNFGSS 256
           F    K+     
Sbjct: 62  FAPVHKVTKIGF 73

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score = 91.4 bits (227), Expect = 7e-23
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 184 DIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           ++G +V  +   +G +R+ G  +   G WYGI+ D +  GKHDGS  GV+YF       G
Sbjct: 27  EVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELD-QPTGKHDGSVFGVRYFTCAP-RHG 84

Query: 244 SFMRRDKLNFGSSF 257
            F    ++    S 
Sbjct: 85  VFAPASRIQRIGSG 98

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84

 Score = 90.8 bits (226), Expect = 8e-23
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 2/73 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV       G +RYVG  +  +G W G++ D E  GK+DG+  G +YF       G 
Sbjct: 10  LGDRVLVGGTKTGVVRYVGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCPP-KFGL 67

Query: 245 FMRRDKLNFGSSF 257
           F    K+    S 
Sbjct: 68  FAPIHKVIRIGSG 80

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1 Length = 86

 Score = 90.5 bits (225), Expect = 9e-23
 Identities = 26/72 (36%), Positives = 34/72 (47%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV  +    G I+++G  +   G W GI  D E  GK+DGS  GV+YF       G 
Sbjct: 5   VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 62

Query: 245 FMRRDKLNFGSS 256
           F R  KL     
Sbjct: 63  FTRPSKLTRKVQ 74

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A Length = 72

 Score = 90.0 bits (224), Expect = 1e-22
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV  +    G I+++G  +   G W GI  D E  GK+DGS  GV+YF       G 
Sbjct: 5   VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYFQCEP-LKGI 62

Query: 245 FMRRDKL 251
           F R  KL
Sbjct: 63  FTRPSKL 69

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 112

 Score = 90.6 bits (225), Expect = 2e-22
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 3/74 (4%)

Query: 185 IGLRVC-DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           +G RV    +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF       G
Sbjct: 36  VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYFTCDE-GHG 93

Query: 244 SFMRRDKLNFGSSF 257
            F+R+ ++      
Sbjct: 94  IFVRQSQIQVFEDS 107

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 91

 Score = 89.7 bits (223), Expect = 2e-22
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 181 MEDDIGLRVC-DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
           ++   G +V   S     T+RYVG  +   G+W G++     +GK+DG+    +YF    
Sbjct: 11  VKLHEGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELR-SAKGKNDGAVGDKRYFTC-K 68

Query: 240 TTSGSFMRRDKLNFGSS 256
              G  +R  ++ +   
Sbjct: 69  PNYGVLVRPSRVTYRGI 85

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1 Length = 102

 Score = 89.8 bits (223), Expect = 3e-22
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 2/73 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV  +    GT+R+ G+ E   G W GI+ D E  GK++GS   V+YF   +   G 
Sbjct: 27  LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELD-EPEGKNNGSVGRVQYFKC-APKYGI 84

Query: 245 FMRRDKLNFGSSF 257
           F    K++     
Sbjct: 85  FAPLSKISKLKDS 97

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A Length = 95

 Score = 89.8 bits (223), Expect = 3e-22
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV  +    G ++Y+G  +   G W G+  D +  GK+DG+  GV+YF   +   G 
Sbjct: 21  VGERVWVNGVKPGVVQYLGETQFAPGQWAGVVLD-DPVGKNDGAVGGVRYFECPA-LQGI 78

Query: 245 FMRRDKLNFGSS 256
           F R  KL    S
Sbjct: 79  FTRPSKLTRQPS 90

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P Length = 93

 Score = 89.0 bits (221), Expect = 4e-22
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 3/73 (4%)

Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           +G RV    +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF       G
Sbjct: 15  VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYFTCDE-GHG 72

Query: 244 SFMRRDKLNFGSS 256
            F+R+ ++     
Sbjct: 73  IFVRQSQIQVFED 85

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 122

 Score = 89.6 bits (222), Expect = 6e-22
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV       G +R+ G     +G W G++ D +  G ++G+++G+ YF       G 
Sbjct: 34  IGDRVLIGNVQPGILRFKGETSFAKGFWAGVELD-KPEGNNNGTYDGIAYFECKE-KHGI 91

Query: 245 FMRRDKLNFGSS 256
           F    K++    
Sbjct: 92  FAPPQKISHIPE 103

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172

 Score = 90.5 bits (224), Expect = 1e-21
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV       G +R++G  +  +G W G++ D E  GK+DG+  G +YF       G 
Sbjct: 41  IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCQP-KYGL 98

Query: 245 FMRRDKLNFGSS 256
           F    K+     
Sbjct: 99  FAPVHKVTKIGF 110

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A Length = 95

 Score = 86.3 bits (214), Expect = 4e-21
 Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 185 IGLRVC----DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHST 240
           +G R           RG + YVG+ +  +GVW G+ +D E  GK+DGS  GV+YF     
Sbjct: 14  VGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRYFDCDP- 71

Query: 241 TSGSFMRRDKLNFG 254
             G F+R   +  G
Sbjct: 72  KYGGFVRPVDVKVG 85

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1 Length = 113

 Score = 84.6 bits (209), Expect = 3e-20
 Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 184 DIGLRVC----DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
            +G R      D    RGT+ YVG  +   G W G+ +D E  GK+DGS NG +YF   +
Sbjct: 34  SVGSRCEVRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYD-EPLGKNDGSVNGKRYFECQA 92

Query: 240 TTSGSFMRRDKLNFGSS 256
              G+F++   +  G S
Sbjct: 93  -KYGAFVKPSAVTVGDS 108

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95

 Score = 79.4 bits (196), Expect = 1e-18
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 184 DIGLRV-----CDSEGHRGTIRYVGSVEGTQ---GVWYGIDWDSETR--GKHDGSHNGVK 233
           D+G  V        E   G +R+ G +   +   G+++G++   E R  G  DG + G +
Sbjct: 9   DVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQ 68

Query: 234 YFWTHSTTSGSFMRRDKLNFGSS 256
            F       G F+  DKL    S
Sbjct: 69  LFQCDE-DCGVFVALDKLELIES 90

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 10/85 (11%)

Query: 342 LKLLANFP----VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLP 396
           ++ L  FP    +  L + +NRI  + + +      L EL L  N++V+ G+++ L SL 
Sbjct: 54  IRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLK 113

Query: 397 NLKYLNLASTNLRNIKLNKEGHYRP 421
           +L YL +    LRN  +  + HYR 
Sbjct: 114 SLTYLCI----LRN-PVTNKKHYRL 133

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 46.6 bits (111), Expect = 3e-06
 Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLK 399
              +         L L   +I  ++++       + +   +N I     ++    L  LK
Sbjct: 11  QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK---LDGFPLLRRLK 67

Query: 400 YLNLASTNLRNI 411
            L + +  +  I
Sbjct: 68  TLLVNNNRICRI 79

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 11/150 (7%)

Query: 15  IEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVF 73
           +   +   + +D S N +     +      L+ L+ L +   R+          L ++  
Sbjct: 37  LGATLDQFDAIDFSDNEIRK---LDGFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTE 92

Query: 74  FVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN 133
            +    +L +   +     L  L  L+ L   +NP+  ++     R   I ++  +++L+
Sbjct: 93  LILTNNSLVELGDLDP---LASLKSLTYLCILRNPVTNKK---HYRLYVIYKVPQVRVLD 146

Query: 134 GSAIERQERQGSEYDYIKEFGAVWLDEKRR 163
              ++ +ERQ +E  +  + GA    +  R
Sbjct: 147 FQKVKLKERQEAEKMFKGKRGAQLAKDIAR 176

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N + T+      F     LE L  Q +N+    E +   SL NL YL+++ T+ R
Sbjct: 83  LDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR 139

Query: 410 NI 411
             
Sbjct: 140 VA 141

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 8/72 (11%)

Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWG-EVNALGSLPNLK 399
              P   T L+L SN++ +L    G+F     L +L L  N +   G    +     +LK
Sbjct: 24  TGIPSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLK 81

Query: 400 YLNLASTNLRNI 411
           YL+L+   +  +
Sbjct: 82  YLDLSFNGVITM 93

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 7e-07
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +            G+F   SSLE L +  N+  +    +    L NL +L+L+   L 
Sbjct: 131 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188

Query: 410 NI 411
            +
Sbjct: 189 QL 190

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L   ++  L   P  F   SSL+ L +  NN     +      L +L+ L+ +  ++ 
Sbjct: 180 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFF-SLDTFPYKCLNSLQVLDYSLNHIM 236

Query: 410 NI 411
             
Sbjct: 237 TS 238

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN 414
           L SVP G+ SS   L L+ N +           L  L  L+L+S  L      
Sbjct: 19  LTSVPTGIPSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 3e-08
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 340 DILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
            +   LA    +  L+   N +  +D V  +   L+EL L  N +     +  L S P L
Sbjct: 477 ALPPALAALRCLEVLQASDNALENVDGVANL-PRLQELLLCNNRLQQSAAIQPLVSCPRL 535

Query: 399 KYLNLASTNLRNI 411
             LNL   +L   
Sbjct: 536 VLLNLQGNSLCQE 548

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 2e-05
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           VT L L  NR+  L         LE L   +N + +      + +LP L+ L L +  L+
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG---VANLPRLQELLLCNNRLQ 521

Query: 410 NIK 412
              
Sbjct: 522 QSA 524

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 51.7 bits (124), Expect = 4e-08
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 336 YIWADILKLLANFP----VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVN 390
            +    L  ++N P    +  L+L  NRI    D +     +L  L L  N + D   + 
Sbjct: 55  SLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

Query: 391 ALGSLPNLKYLNL 403
            L  L  LK L+L
Sbjct: 115 PLKKLECLKSLDL 127

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 29/126 (23%), Positives = 39/126 (30%), Gaps = 11/126 (8%)

Query: 22  IEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRI-RLKSSSAPAHSYLAEVVFFVHLGRT 80
           +E L L    L S         +L  L+ L L   R+          L  +      G  
Sbjct: 51  LEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 81  LCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ 140
           L D   ++    L  L  L SL      +         RE     L  L  L+G   E Q
Sbjct: 107 LKDISTLEP---LKKLECLKSLDLFNCEVTNLN---DYRESVFKLLPQLTYLDGYDREDQ 160

Query: 141 ERQGSE 146
           E   S+
Sbjct: 161 EAPDSD 166

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.0 bits (129), Expect = 5e-08
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  N I+ ++ +  +   LE LYL  N I D   +  L  L  L  L+L    + +
Sbjct: 112 KSLSLEHNGISDINGLVHL-PQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQISD 167

Query: 411 I 411
           I
Sbjct: 168 I 168

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 50.5 bits (120), Expect = 6e-07
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           +   P VT L L  N++T +  +  +  +L  L+L EN I D   +++L  L  LK L+L
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNL-KNLGWLFLDENKIKD---LSSLKDLKKLKSLSL 116

Query: 404 ASTNLRNIK 412
               + +I 
Sbjct: 117 EHNGISDIN 125

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N+I+ +  + G+ + L+ LYL +N+I D   + AL  L NL  L L S    N  
Sbjct: 158 LSLEDNQISDIVPLAGL-TKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKP 213

Query: 413 LNK 415
           +N 
Sbjct: 214 INH 216

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L + P +  L L +N+IT +  +  + + L+ L L++N I D   +  L  L  L+ L L
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRL-TKLDTLSLEDNQISD---IVPLAGLTKLQNLYL 182

Query: 404 ASTNLRNIK 412
           +  ++ +++
Sbjct: 183 SKNHISDLR 191

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
              F       L    +T   +   + +S++++    ++I     V  +  LPN+  L L
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKS---VQGIQYLPNVTKLFL 72

Query: 404 ASTNLRNIK 412
               L +IK
Sbjct: 73  NGNKLTDIK 81

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 50.8 bits (122), Expect = 5e-08
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 336 YIWADILKLLANFP----VTCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVN 390
                 L  +AN P    +  L+L  NR++    V      +L  L L  N I D   + 
Sbjct: 48  STINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE 107

Query: 391 ALGSLPNLKYLNL 403
            L  L NLK L+L
Sbjct: 108 PLKKLENLKSLDL 120

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.4 bits (108), Expect = 4e-06
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 3/89 (3%)

Query: 325 HIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI 383
            +  L L N       +  L   F  +  L   +  +T++ ++P + + L++L L +N +
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-NKLKKLELSDNRV 76

Query: 384 VDWGEVNALGSLPNLKYLNLASTNLRNIK 412
               E       PNL +LNL+   ++++ 
Sbjct: 77  SGGLE-VLAEKCPNLTHLNLSGNKIKDLS 104

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 6e-04
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 333 NMGYIWADILKLLANFPVTCLKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVN 390
            MG      L+      V  L L ++R     L+ +   F  LE L      +     + 
Sbjct: 2   EMGRRIHLELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IA 58

Query: 391 ALGSLPNLKYLNLASTNLRNI 411
            L  L  LK L L+   +   
Sbjct: 59  NLPKLNKLKKLELSDNRVSGG 79

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 16/79 (20%), Positives = 29/79 (36%)

Query: 333 NMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
            + +        L    +  L L  N    + +       L+ L  Q + +    E +A 
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAF 420

Query: 393 GSLPNLKYLNLASTNLRNI 411
            SL  L YL+++ TN +  
Sbjct: 421 LSLEKLLYLDISYTNTKID 439

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +            G+F   +SL  L +  N+  D    N   +  NL +L+L+   L 
Sbjct: 429 LDISYTNTKIDF--DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486

Query: 410 NI 411
            I
Sbjct: 487 QI 488

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
           L L  N I +    PG F   +SLE L   E  +     E   +G L  LK LN+A   +
Sbjct: 85  LILTGNPIQSFS--PGSFSGLTSLENLVAVETKL--ASLESFPIGQLITLKKLNVAHNFI 140

Query: 409 RNIKLNK 415
            + KL  
Sbjct: 141 HSCKLPA 147

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
              + L  N +  L      FS    L+ L L    I +  E  A   L +L  L L   
Sbjct: 34  TKNIDLSFNPLKILK--SYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGN 90

Query: 407 NLRNI 411
            +++ 
Sbjct: 91  PIQSF 95

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L     ++ +L+          +L++L +  N I          +L NL +++L+   ++
Sbjct: 109 LVAVETKLASLE--SFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166

Query: 410 NI 411
            I
Sbjct: 167 TI 168

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.9 bits (104), Expect = 8e-05
 Identities = 13/80 (16%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 335 GYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNA 391
               +++     N  +T L L   ++  +    G+F     L+ L +  NN++     + 
Sbjct: 462 DNTLSNVFANTTN--LTFLDLSKCQLEQIS--WGVFDTLHRLQLLNMSHNNLLFLDS-SH 516

Query: 392 LGSLPNLKYLNLASTNLRNI 411
              L +L  L+ +   +   
Sbjct: 517 YNQLYSLSTLDCSFNRIETS 536

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 353 LKLPSNRITT--LDSVPGMFSSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTNL 408
           LK+  N      L +V    ++L  L L +  +  + WG      +L  L+ LN++  NL
Sbjct: 453 LKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---VFDTLHRLQLLNMSHNNL 509

Query: 409 RNI 411
             +
Sbjct: 510 LFL 512

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 325 HIHTLTLGN--MGYIWADILKLLANFPVTC--LKLPSNRITTLDSVPGMFSSLEELYLQE 380
           ++  + L    +  I  + L+ L   P     L +  N I  +         L EL L+ 
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213

Query: 381 NNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           N          L +L  L    L     ++ 
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDE 244

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L +   ++    ++      L+ L L  N            +LP+L YL+L+   L   
Sbjct: 312 LSIIRCQLKQFPTLD--LPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSFS 365

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 7e-08
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             LK+ +N+IT L  +  + S L  L +  N I D   +NA+  L  LK LN+ S  + +
Sbjct: 224 NSLKIGNNKITDLSPLANL-SQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISD 279

Query: 411 IK 412
           I 
Sbjct: 280 IS 281

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  N+I  +  +  + +SL       N I D   +  + ++  L  L + +  + +
Sbjct: 180 YSLSLNYNQIEDISPLASL-TSLHYFTAYVNQITD---ITPVANMTRLNSLKIGNNKITD 235

Query: 411 IK 412
           + 
Sbjct: 236 LS 237

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L + SN+I+ +  +  + S L  L+L  N + +  ++  +G L NL  L L+  ++ +
Sbjct: 268 KMLNVGSNQISDISVLNNL-SQLNSLFLNNNQLGNE-DMEVIGGLTNLTTLFLSQNHITD 325

Query: 411 I 411
           I
Sbjct: 326 I 326

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L +N   +  S     + L  L + E+ + D   V  + +L +L  L+L    + +I 
Sbjct: 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKD---VTPIANLTDLYSLSLNYNQIEDIS 193

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 4e-06
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L +  +++  +  +    + L  L L  N I D   ++ L SL +L Y       + +I 
Sbjct: 160 LTVTESKVKDVTPI-ANLTDLYSLSLNYNQIED---ISPLASLTSLHYFTAYVNQITDIT 215

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 18/95 (18%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEEL 376
            QIFP   +       +       +        +T L +   ++ ++  +    ++LE L
Sbjct: 13  NQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQGI-EYLTNLEYL 71

Query: 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            L  N I D   ++ L +L  L  L + +  + +I
Sbjct: 72  NLNGNQITD---ISPLSNLVKLTNLYIGTNKITDI 103

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  + I+ +  +  + + +  L L  N+ +   +++ L ++  L YL +  + +++
Sbjct: 113 RELYLNEDNISDISPLANL-TKMYSLNLGANHNL--SDLSPLSNMTGLNYLTVTESKVKD 169

Query: 411 I 411
           +
Sbjct: 170 V 170

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
            A+        L    +T + +      S+ +L +    +     +  +  L NL+YLNL
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQ-EELESITKLVVAGEKVAS---IQGIEYLTNLEYLNL 73

Query: 404 ASTNLRNIK 412
               + +I 
Sbjct: 74  NGNQITDIS 82

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N+IT +  +      L  LY+  N I D   ++AL +L NL+ L L   N+ +I 
Sbjct: 71  LNLNGNQITDISPL-SNLVKLTNLYIGTNKITD---ISALQNLTNLRELYLNEDNISDIS 126

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 39/65 (60%), Gaps = 5/65 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L+N   +T L + +N+IT + ++  + ++L ELYL E+NI D   ++ L +L  +  LNL
Sbjct: 84  LSNLVKLTNLYIGTNKITDISALQNL-TNLRELYLNEDNISD---ISPLANLTKMYSLNL 139

Query: 404 ASTNL 408
            + + 
Sbjct: 140 GANHN 144

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L++ +N+I+ +++V  + + L+ L +  N I D   ++ L +L  L  L L +  L N
Sbjct: 246 TWLEIGTNQISDINAVKDL-TKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGN 301

Query: 411 I 411
            
Sbjct: 302 E 302

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L +N++   D    +     +L  L+L +N+I D   +  L SL  +   + A+  ++
Sbjct: 292 LFLNNNQLGNED--MEVIGGLTNLTTLFLSQNHITD---IRPLASLSKMDSADFANQVIK 346

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           +++    ITT+    G+  SL EL+L  N I       +L  L NL  L L+  ++  +
Sbjct: 176 IRIADTNITTIP--QGLPPSLTELHLDGNKITKVDA-ASLKGLNNLAKLGLSFNSISAV 231

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
           L++  N IT +     +F+    +  + L  N +   G E  A   +  L Y+ +A TN+
Sbjct: 126 LRVHENEITKVR--KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 409 RNI 411
             I
Sbjct: 184 TTI 186

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N++  L     M  +L+EL + EN I    + +    L  +  + L +  L++  
Sbjct: 105 LYLSKNQLKELP--EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSG 161

Query: 413 LN 414
           + 
Sbjct: 162 IE 163

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N+IT +D          +L +L L  N+I    +  +L + P+L+ L+L +  L 
Sbjct: 197 LHLDGNKITKVD--AASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLV 253

Query: 410 NI 411
            +
Sbjct: 254 KV 255

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
              L L +N+IT +    G F    +L  L L  N I       A   L  L+ L L+  
Sbjct: 54  TALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLYLSKN 110

Query: 407 NLRNI 411
            L+ +
Sbjct: 111 QLKEL 115

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
           L L  N I+ +D   G       L EL+L  N +V   +V   L     ++ + L + N+
Sbjct: 221 LGLSFNSISAVD--NGSLANTPHLRELHLNNNKLV---KVPGGLADHKYIQVVYLHNNNI 275

Query: 409 RNIKLN 414
             I  N
Sbjct: 276 SAIGSN 281

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L+ VP  +      L LQ N I +  +     +L NL  L L +  +  I
Sbjct: 43  LEKVPKDLPPDTALLDLQNNKITEIKD-GDFKNLKNLHTLILINNKISKI 91

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 92

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 6/72 (8%)

Query: 185 IGLRVC---DSEGHRGTIRYVGSVEG--TQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
           I  RV          GT+ +   + G  + G + G+D D+   G  DG  +GV+      
Sbjct: 12  INSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPI-GNWDGRFDGVQLCSFAC 70

Query: 240 TTSGSFMRRDKL 251
             S   +  + +
Sbjct: 71  VESTILLHINDI 82

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L + +   T  + + G+ S+LE L +   ++     +  L  L +L  L+++ +   +  
Sbjct: 71  LTINNIHATNYNPISGL-SNLERLRIMGKDVTSDK-IPNLSGLTSLTLLDISHSAHDDSI 128

Query: 413 LNK 415
           L K
Sbjct: 129 LTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 45.3 bits (108), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 328 TLTLGNMGYIWADILKLLANFP-VTCLKLPSN-RITTLDSVPGMFSSLEELYLQENNIVD 385
            L + +       IL  +   P V  + L  N  IT +  +  +   L+ L +Q + + D
Sbjct: 116 LLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL-PELKSLNIQFDGVHD 173

Query: 386 WGEVNALGSLPNLKYLNLASTNLRNIK 412
                 +   P L  L   S  +   K
Sbjct: 174 ---YRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 351 TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           T L +  +               +  + L  N  +   ++  L +LP LK LN+    + 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI--TDIMPLKTLPELKSLNIQFDGVH 172

Query: 410 NIK 412
           + +
Sbjct: 173 DYR 175

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L S +IT +  + G+ S+L+ LYL  N I +   ++ L  L NL+YL++ +  + +
Sbjct: 110 KTLDLTSTQITDVTPLAGL-SNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSD 165

Query: 411 I 411
           +
Sbjct: 166 L 166

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           LA    +  L L  N+IT +  + G+ ++L+ L +    + D   +  L +L  L  L  
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGL-TNLQYLSIGNAQVSD---LTPLANLSKLTTLKA 180

Query: 404 ASTNLRNI 411
               + +I
Sbjct: 181 DDNKISDI 188

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 7/105 (6%)

Query: 309 IPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFP-VTCLKLPSNRITTLDSVP 367
           I   T+  +  IFP   +        G          A+   +T L      +TT++ V 
Sbjct: 3   ITQPTA--INVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGV- 59

Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
              ++L  L L++N I D   +  L +L  +  L L+   L+N+ 
Sbjct: 60  QYLNNLIGLELKDNQITD---LAPLKNLTKITELELSGNPLKNVS 101

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L N   +T L+L  N +  + ++ G+  S++ L L    I D      L  L NL+ L L
Sbjct: 81  LKNLTKITELELSGNPLKNVSAIAGL-QSIKTLDLTSTQITDV---TPLAGLSNLQVLYL 136

Query: 404 ASTNLRNIK 412
               + NI 
Sbjct: 137 DLNQITNIS 145

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           LAN   +T LK   N+I+ +  +  +  +L E++L+ N I D   V+ L +  NL  + L
Sbjct: 169 LANLSKLTTLKADDNKISDISPLASL-PNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224

Query: 404 ASTNLRNIKLNK 415
            +  + N  +  
Sbjct: 225 TNQTITNQPVFY 236

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L +  N+I +L  +  +  +L  LY+  N I +WGE++ L +L  L+ L L
Sbjct: 98  LWISYNQIASLSGIEKL-VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 48.1 bits (115), Expect = 9e-07
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L      I  +D+      + + L L  NNI    ++++L  + NL+ L+L    ++ I
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNLIKKI 85

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 45.8 bits (109), Expect = 7e-06
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  N I  ++++  +  +LEEL++  N I     ++ +  L NL+ L +++  + N
Sbjct: 73  RILSLGRNLIKKIENLDAVADTLEELWISYNQIAS---LSGIEKLVNLRVLYMSNNKITN 129

Query: 411 IK 412
             
Sbjct: 130 WG 131

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 4/74 (5%)

Query: 340 DILKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
            +   L+       L L +N I  + S+ GM  +L  L L  N I     ++A+     L
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISSLSGM-ENLRILSLGRNLIKKIENLDAV--ADTL 95

Query: 399 KYLNLASTNLRNIK 412
           + L ++   + ++ 
Sbjct: 96  EELWISYNQIASLS 109

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 93  LHYLPKLSSLRFTKNPILAEERVVSS----REKTIARLGGLKLLNGSAIERQERQGSE 146
           L  L KL  L    NP+  + +  ++    R + + RL  LK L+G  ++  ER+ + 
Sbjct: 136 LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN 193

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L +   +  L L  N I+ ++ +  +   LE LYL  N I D   +  L  L  L  L+L
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHL-PQLESLYLGNNKITD---ITVLSRLTKLDTLSL 163

Query: 404 ASTNLRNI 411
               + +I
Sbjct: 164 EDNQISDI 171

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N+I+ +  + G+ + L+ LYL +N+I D   + AL  L NL  L L S    N  
Sbjct: 161 LSLEDNQISDIVPLAGL-TKLQNLYLSKNHISD---LRALAGLKNLDVLELFSQECLNKP 216

Query: 413 LNK 415
           +N 
Sbjct: 217 INH 219

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           +   P VT L L  N++T +  +  +  +L  L+L EN + D   +++L  L  LK L+L
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPLANL-KNLGWLFLDENKVKD---LSSLKDLKKLKSLSL 119

Query: 404 ASTNLRNIK 412
               + +I 
Sbjct: 120 EHNGISDIN 128

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N++  L S+  +   L+ L L+ N I D   +N L  LP L+ L L +  + +I 
Sbjct: 95  LFLDENKVKDLSSLKDL-KKLKSLSLEHNGISD---INGLVHLPQLESLYLGNNKITDIT 150

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
             L    +T   +   + +S++++    ++I     V  +  LPN+  L L    L +IK
Sbjct: 29  DNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKS---VQGIQYLPNVTKLFLNGNKLTDIK 84

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L L  N + T+ S       LE L  Q +N+    E +   SL NL YL+++ T+ R  
Sbjct: 378 LDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L      + +L++ P G   +L+EL +  N I  +       +L NL++L+L+S  +++I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N I +L    G F   SSL++L   E N+    E   +G L  LK LN+A   ++
Sbjct: 81  LILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQ 137

Query: 410 NIKL 413
           + KL
Sbjct: 138 SFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +            G+F   SSLE L +  N+  +    +    L NL +L+L+   L 
Sbjct: 426 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 410 NI 411
            +
Sbjct: 484 QL 485

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 350 VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
              L L  N +  L       F  L+ L L    I    E  A  SL +L  L L    +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88

Query: 409 RNI 411
           +++
Sbjct: 89  QSL 91

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L    I T++   G +   S L  L L  N I     + A   L +L+ L    TNL 
Sbjct: 57  LDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLA 113

Query: 410 NI 411
           ++
Sbjct: 114 SL 115

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L   ++  L   P  F   SSL+ L +  NN     +      L +L+ L+ +  ++ 
Sbjct: 475 LDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS-LDTFPYKCLNSLQVLDYSLNHIM 531

Query: 410 NIKLN 414
             K  
Sbjct: 532 TSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNLRNI 411
           L   SN+     S   +  SLE L L  N +   G    +     +LKYL+L+   +  +
Sbjct: 330 LTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM 388

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
             L L  N+I  +      F     LE L L  N+I    E+ A   L NL  L L    
Sbjct: 67  RLLNLHENQIQIIK--VNSFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNR 123

Query: 408 LRNI 411
           L  I
Sbjct: 124 LTTI 127

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L +N I ++      F+   SL  L L E   + +    A   L NL+YLNLA  NLR
Sbjct: 141 LWLRNNPIESIP--SYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198

Query: 410 NI 411
            I
Sbjct: 199 EI 200

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N ++ +   PG F     L++L++ ++ I    E NA  +L +L  +NLA  NL 
Sbjct: 212 LDLSGNHLSAIR--PGSFQGLMHLQKLWMIQSQI-QVIERNAFDNLQSLVEINLAHNNLT 268

Query: 410 NI 411
            +
Sbjct: 269 LL 270

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
           L+L  N I T++   G F   ++L  L L +N +  +  G   A   L  LK L L +  
Sbjct: 93  LQLSRNHIRTIE--IGAFNGLANLNTLELFDNRLTTIPNG---AFVYLSKLKELWLRNNP 147

Query: 408 LRNI 411
           + +I
Sbjct: 148 IESI 151

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 358 NRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            R++ +    G F   S+L  L L   N+    E+  L  L  L  L+L+  +L  I
Sbjct: 171 KRLSYIS--EGAFEGLSNLRYLNLAMCNLR---EIPNLTPLIKLDELDLSGNHLSAI 222

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L  VP G+ ++   L L EN I      N+   L +L+ L L+  ++R I
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNHIRTI 103

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 2e-07
 Identities = 21/71 (29%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
              P     L L  N I  +      F     LE L L  N+I    EV A   L +L  
Sbjct: 71  QGIPSNTRYLNLMENNIQMIQ--ADTFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNT 127

Query: 401 LNLASTNLRNI 411
           L L    L  I
Sbjct: 128 LELFDNWLTVI 138

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L +N I ++      F+   SL  L L E   +++    A   L NLKYLNL   N++
Sbjct: 152 LWLRNNPIESIP--SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209

Query: 410 NI 411
           ++
Sbjct: 210 DM 211

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L++  N    +   PG F    SL++L++  + +    E NA   L +L  LNLA  NL 
Sbjct: 223 LEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQV-SLIERNAFDGLASLVELNLAHNNLS 279

Query: 410 NI 411
           ++
Sbjct: 280 SL 281

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 6e-06
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-L 408
           L+L  N +T +    G F     L EL+L+ N I       A   +P+L  L+L     L
Sbjct: 128 LELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKL 184

Query: 409 RNI 411
             I
Sbjct: 185 EYI 187

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 8/57 (14%)

Query: 358 NRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            ++  +    G F    +L+ L L   NI    ++  L  L  L+ L ++  +   I
Sbjct: 182 KKLEYIS--EGAFEGLFNLKYLNLGMCNIK---DMPNLTPLVGLEELEMSGNHFPEI 233

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L +  N +  +   P + SSL EL + +N I    +      L N+  + +    L N  
Sbjct: 107 LYISKNHLVEIP--PNLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSG 163

Query: 413 LN 414
             
Sbjct: 164 FE 165

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L++   ++T +     +  +L EL+L  N I        L     L  L L    +R I
Sbjct: 177 LRISEAKLTGIP--KDLPETLNELHLDHNKIQAIEL-EDLLRYSKLYRLGLGHNQIRMI 232

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N+I  ++           L  L L  N I       +L  LP L+ L+L +  L 
Sbjct: 198 LHLDHNKIQAIE--LEDLLRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLS 254

Query: 410 NI 411
            +
Sbjct: 255 RV 256

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
            T L L +N I+ L      F     L  L L  N I       A   L  L+ L ++  
Sbjct: 56  TTLLDLQNNDISELR--KDDFKGLQHLYALVLVNNKISKI-HEKAFSPLRKLQKLYISKN 112

Query: 407 NLRNI 411
           +L  I
Sbjct: 113 HLVEI 117

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
           L++  NRI  +    G+FS   ++  + +  N + + G E  A   L  L YL ++   L
Sbjct: 128 LRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184

Query: 409 RNI 411
             I
Sbjct: 185 TGI 187

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L +VP  +      L LQ N+I +  + +    L +L  L L +  +  I
Sbjct: 45  LKAVPKEISPDTTLLDLQNNDISELRK-DDFKGLQHLYALVLVNNKISKI 93

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L + SN+++ +  +  + ++LE L    N I D   +  LG L NL  L+L    L++
Sbjct: 180 ERLDISSNKVSDISVLAKL-TNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD 235

Query: 411 I 411
           I
Sbjct: 236 I 236

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 6e-07
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T LKL +N+I+ +  + G+ ++L  L L EN + D   ++ + +L NL YL L   N+ +
Sbjct: 268 TELKLGANQISNISPLAGL-TALTNLELNENQLED---ISPISNLKNLTYLTLYFNNISD 323

Query: 411 IK 412
           I 
Sbjct: 324 IS 325

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 50.3 bits (121), Expect = 7e-07
 Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L   +N+I+ +  +  + ++L+EL L  N + D   +  L SL NL  L+LA+  + N+
Sbjct: 204 LIATNNQISDITPLGIL-TNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNL 258

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  N++  + ++  + ++L +L L  N I +   +  L  L  L  L L +  + N
Sbjct: 224 DELSLNGNQLKDIGTLASL-TNLTDLDLANNQISN---LAPLSGLTKLTELKLGANQISN 279

Query: 411 I 411
           I
Sbjct: 280 I 280

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L L  N I+ +  V  + + L+ L+   N + D   V++L +L N+ +L+     + ++
Sbjct: 314 LTLYFNNISDISPVSSL-TKLQRLFFYNNKVSD---VSSLANLTNINWLSAGHNQISDL 368

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           VT L+     I ++D V    ++L ++    N + D   +  L +L  L  + + +  + 
Sbjct: 48  VTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIA 103

Query: 410 NI 411
           +I
Sbjct: 104 DI 105

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 4e-06
 Identities = 13/60 (21%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           +   +N++T +  +  + + L ++ +  N I D   +  L +L NL  L L +  + +I 
Sbjct: 73  INFSNNQLTDITPLKNL-TKLVDILMNNNQIAD---ITPLANLTNLTGLTLFNNQITDID 128

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             + + +N+I  +  +    ++L  L L  N I D   ++ L +L NL  L L+S  + +
Sbjct: 93  VDILMNNNQIADITPL-ANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISD 148

Query: 411 I 411
           I
Sbjct: 149 I 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L+L  N++  +  +  +  +L  L L  NNI D   ++ + SL  L+ L   +  + +
Sbjct: 290 TNLELNENQLEDISPISNL-KNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSD 345

Query: 411 I 411
           +
Sbjct: 346 V 346

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L L +N+I+ L  + G+ + L EL L  N I +   ++ L  L  L  L L    L +
Sbjct: 246 TDLDLANNQISNLAPLSGL-TKLTELKLGANQISN---ISPLAGLTALTNLELNENQLED 301

Query: 411 IK 412
           I 
Sbjct: 302 IS 303

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 342 LKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401
              LA        L    +T   S       +  L      I     ++ +  L NL  +
Sbjct: 20  DTALAE--KMKTVLGKTNVTDTVSQ-TDLDQVTTLQADRLGIKS---IDGVEYLNNLTQI 73

Query: 402 NLASTNLRNI 411
           N ++  L +I
Sbjct: 74  NFSNNQLTDI 83

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 14/55 (25%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            N++T L  +    ++LE L +  N + D   ++ L  L NL+ L   +  + +I
Sbjct: 164 GNQVTDLKPL-ANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDI 214

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L   +N+++ + S+  + +++  L    N I D   +  L +L  +  L L      N  
Sbjct: 336 LFFYNNKVSDVSSLANL-TNINWLSAGHNQISD---LTPLANLTRITQLGLNDQAWTNAP 391

Query: 413 LN 414
           +N
Sbjct: 392 VN 393

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L L +N+IT +D +  + ++L  L L  N I D   ++AL  L +L+ L+     + +
Sbjct: 115 TGLTLFNNQITDIDPLKNL-TNLNRLELSSNTISD---ISALSGLTSLQQLSF-GNQVTD 169

Query: 411 IK 412
           +K
Sbjct: 170 LK 171

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L+L SN I+ + ++ G+ +SL++L    N + D   +  L +L  L+ L+++S  + +I 
Sbjct: 139 LELSSNTISDISALSGL-TSLQQLSFG-NQVTD---LKPLANLTTLERLDISSNKVSDIS 193

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.2 bits (123), Expect = 4e-07
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 325 HIHTLTLGN----MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELY 377
           ++  L+L N    +  +  +    LA+ P+  L L  N+I+ ++     FS    LE L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIE--SDAFSWLGHLEVLD 411

Query: 378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L  N I           L N+  + L+      +
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL 445

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 4e-06
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L    +  +DS P  F    +L  L L  NNI +  + + L  L  L+ L+L   NL 
Sbjct: 459 LMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND-DMLEGLEKLEILDLQHNNLA 517

Query: 410 NI 411
            +
Sbjct: 518 RL 519

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.9 bits (112), Expect = 8e-06
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 350 VTCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           +T L L  N++  L +     +S L  L +  N I    E      LP LK LNL    L
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNEL 85

Query: 409 RNI 411
             +
Sbjct: 86  SQL 88

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L SN I  +      F    +L  L L  N +    ++     L NL+ L L++  ++
Sbjct: 102 LHLMSNSIQKIK--NNPFVKQKNLITLDLSHNGLSS-TKLGTQVQLENLQELLLSNNKIQ 158

Query: 410 NI 411
            +
Sbjct: 159 AL 160

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N ++ L      F   ++L EL+L  N+I    + N      NL  L+L+   L 
Sbjct: 78  LNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQKNLITLDLSHNGLS 134

Query: 410 NIKLN 414
           + KL 
Sbjct: 135 STKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
           + L  N+   L      F+   SL+ L L+   + +     +    L NL  L+L++ N+
Sbjct: 435 IYLSYNKYLQLT--RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 409 RNI 411
            NI
Sbjct: 493 ANI 495

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 8/90 (8%)

Query: 325 HIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQEN 381
           ++  L            LK L++  +  L L SN    +     +F     L+ + L  N
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSH--LHILNLESNGFDEIP--VEVFKDLFELKIIDLGLN 570

Query: 382 NIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           N+      +   +  +LK LNL    + ++
Sbjct: 571 NLNTL-PASVFNNQVSLKSLNLQKNLITSV 599

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 15/64 (23%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
             L L  N I    +    +    ++ E+YL  N  +     N+   +P+L+ L L    
Sbjct: 408 EVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVA 465

Query: 408 LRNI 411
           L+N+
Sbjct: 466 LKNV 469

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 325 HIHTLTLGN---MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMF-----SSLEEL 376
            +  L L N      +   +   LAN  +  L L +++++T       F     ++L  L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTML 253

Query: 377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            L  NN+   G  ++   LP L+Y  L   N++++
Sbjct: 254 DLSYNNLNVVGN-DSFAWLPQLEYFFLEYNNIQHL 287

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 12/69 (17%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI-------VDWGEVNALGSLPNLKYLN 402
           L L +N I  ++    M      LE L LQ NN+          G +  L  L +L  LN
Sbjct: 485 LDLSNNNIANIN--DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 403 LASTNLRNI 411
           L S     I
Sbjct: 543 LESNGFDEI 551

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 341 ILKLLANFPVTCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLK 399
            L L  +F  T   +    +  +D         LE L +++N+I    + N    L NLK
Sbjct: 300 YLNLKRSF--TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMFTGLINLK 356

Query: 400 YLNLASTNLRNIK 412
           YL+L S +  +++
Sbjct: 357 YLSL-SNSFTSLR 368

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 8/64 (12%)

Query: 353 LKLPSNRITTLDSVPGMF-----SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
           L L +N+I  L            SSL++L L  N I ++       ++  L  L L +  
Sbjct: 150 LLLSNNKIQALK--SEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLNNVQ 206

Query: 408 LRNI 411
           L   
Sbjct: 207 LGPS 210

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 4/71 (5%)

Query: 342 LKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401
           L  + +  ++ L L +N +   DS+  +  +LE L ++ N +     +  LG L  L+ L
Sbjct: 100 LNGIPSACLSRLFLDNNELRDTDSLIHL-KNLEILSIRNNKLKS---IVMLGFLSKLEVL 155

Query: 402 NLASTNLRNIK 412
           +L    + N  
Sbjct: 156 DLHGNEITNTG 166

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L +  NR+  L+ +P     L  L+L  N + D    ++L  L NL+ L++ +  L++
Sbjct: 88  EELSVNRNRLKNLNGIPSA--CLSRLFLDNNELRD---TDSLIHLKNLEILSIRNNKLKS 142

Query: 411 IK 412
           I 
Sbjct: 143 IV 144

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 5/69 (7%)

Query: 345 LANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
                 V      ++ I +L  +   F++L+EL+L  N I D   ++ L  L  L+ L++
Sbjct: 37  QKELSGVQNFNGDNSNIQSLAGM-QFFTNLKELHLSHNQISD---LSPLKDLTKLEELSV 92

Query: 404 ASTNLRNIK 412
               L+N+ 
Sbjct: 93  NRNRLKNLN 101

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 13/64 (20%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L + +N++ ++  +  + S LE L L  N I +      L  L  + +++L      N
Sbjct: 131 EILSIRNNKLKSIVMLGFL-SKLEVLDLHGNEITN---TGGLTRLKKVNWIDLTGQKCVN 186

Query: 411 IKLN 414
             + 
Sbjct: 187 EPVK 190

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 8/58 (13%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
                I  +   PG  ++  +  L + ++ D   + +   L  ++  N  ++N++++ 
Sbjct: 4   QRPTPINQVFPDPG-LANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQSLA 57

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L    N I  +     +   L  L LQ NN+    +   L + P L  ++L+   L  I
Sbjct: 210 LDASHNSINVVR--GPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKI 263

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +  N I  L   P +F     L  L L+ N++          + P L  L++++ NL 
Sbjct: 98  LYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLE 154

Query: 410 NI 411
            I
Sbjct: 155 RI 156

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T LKL  N +T    +      L E+ L  N +      +    +  L+ L +++  L  
Sbjct: 229 TILKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVA 286

Query: 411 I 411
           +
Sbjct: 287 L 287

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N +++L    G+F     L  L +  NN+    + +   +  +L+ L L+S  L 
Sbjct: 122 LVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLT 178

Query: 410 NIKLN 414
           ++ L+
Sbjct: 179 HVDLS 183

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L + +NR+  L+       +L+ L L  N+++             L+ L L   ++  +K
Sbjct: 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVTLK 334

Query: 413 LN 414
           L+
Sbjct: 335 LS 336

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           +   ++ +  L  ++   F  +E L L +  I +  +  A      ++ L +    +R +
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYL 108

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L+L SNR+T +D    +  SL    +  N +      + L     ++ L+ +  ++  +
Sbjct: 170 LQLSSNRLTHVD--LSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVV 220

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N +  ++     F  LE LYL  N+IV       L +   LK L L+  +     
Sbjct: 300 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNS 355

Query: 413 L 413
           L
Sbjct: 356 L 356

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 19/61 (31%), Positives = 28/61 (45%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  N + T+ S       LE L  Q +N+    E +   SL NL YL+++ T+ R 
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435

Query: 411 I 411
            
Sbjct: 436 A 436

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 5/64 (7%)

Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
             L      + +L+          +L+EL +  N I  +       +L NL++L+L+S  
Sbjct: 103 QKLVAVETNLASLE--NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 408 LRNI 411
           +++I
Sbjct: 161 IQSI 164

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +            G+F   SSLE L +  N+  +    +    L NL +L+L+   L 
Sbjct: 426 LDISHTHTRVAF--NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 410 NI 411
            +
Sbjct: 484 QL 485

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N I +L    G F   SSL++L   E N+    E   +G L  LK LN+A   ++
Sbjct: 81  LILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNLIQ 137

Query: 410 NIKLNK 415
           + KL +
Sbjct: 138 SFKLPE 143

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 350 VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
              L L  N +  L       F  L+ L L    I    E  A  SL +L  L L    +
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPI 88

Query: 409 RNI 411
           +++
Sbjct: 89  QSL 91

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 353 LKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           LK+  N      L  +     +L  L L +  +       A  SL +L+ LN+AS  L++
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMASNQLKS 508

Query: 411 I 411
           +
Sbjct: 509 V 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 327 HTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW 386
             L L N  +     LKL +   +  L   SN+     S   +  SLE L L  N +   
Sbjct: 307 QHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEVDL-PSLEFLDLSRNGLSFK 362

Query: 387 GEV-NALGSLPNLKYLNLASTNLRNI 411
           G    +     +LKYL+L+   +  +
Sbjct: 363 GCCSQSDFGTTSLKYLDLSFNGVITM 388

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKY 400
           +        L L +NRIT +           +L+ L L  N I    E ++  SL +L++
Sbjct: 48  SGLTEAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINTI-EEDSFSSLGSLEH 104

Query: 401 LNLASTNLRNI 411
           L+L+   L N+
Sbjct: 105 LDLSYNYLSNL 115

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N ++ L      F   SSL  L L  N     GE +    L  L+ L +      
Sbjct: 105 LDLSYNYLSNLS--SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV----GN 158

Query: 410 NIKL 413
               
Sbjct: 159 MDTF 162

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 2e-06
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 351 TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
             L L +N+   L       S   SL  L ++ N          L +L NL+ L+L+  +
Sbjct: 304 KKLVLSANKFENLC--QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 408 LRNIKLNKE 416
           +        
Sbjct: 362 IETSDCCNL 370

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N   +L      F     LE L L    +      +   +L  LK LNL+ + L 
Sbjct: 381 LNLSYNEPLSLK--TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 410 NI 411
             
Sbjct: 439 IS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L +N +  +           +L+ L+  +  I    +   L +   L+ L L S ++ 
Sbjct: 86  LVLTANPLIFMA--ETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHIS 142

Query: 410 NIKLN 414
           +IKL 
Sbjct: 143 SIKLP 147

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
           L L  + +        +F    +L+ L LQ N+    +  + N+L +L  L+ L L+  +
Sbjct: 430 LNLSHSLLDISS--EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487

Query: 408 LRNI 411
           L +I
Sbjct: 488 LSSI 491

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/109 (20%), Positives = 38/109 (34%), Gaps = 12/109 (11%)

Query: 311 NDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVT---CLKLPSNRITTLDSVP 367
           ND +G+    F      +L  G        I K L N  +               +   P
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGT-QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS--P 245

Query: 368 GMFS-----SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            +F      S+E + LQ++   +    N       L+ L+L +T+L  +
Sbjct: 246 AVFEGLCEMSVESINLQKHYFFNISS-NTFHCFSGLQELDLTATHLSEL 293

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
             CL+   N + T+      FS   +L  L L    I      +   S   L  L L + 
Sbjct: 35  TECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTAN 91

Query: 407 NLRNI 411
            L  +
Sbjct: 92  PLIFM 96

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L      I+++D          +LE LYL  N+I    ++        LK L+  +  + 
Sbjct: 110 LFFIQTGISSID--FIPLHNQKTLESLYLGSNHISS-IKLPKGFPTEKLKVLDFQNNAIH 166

Query: 410 NIK 412
            + 
Sbjct: 167 YLS 169

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 5/63 (7%)

Query: 353 LKLPSNRITTLDSV-PGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           L L  N     +            LE L L   ++    + +A  SL  + +++L+   L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ-HAFTSLKMMNHVDLSHNRL 512

Query: 409 RNI 411
            + 
Sbjct: 513 TSS 515

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVN-ALGSLPNLKYLNLASTNL 408
           L +  N     +   G      +L EL L  ++I      N  L +L +L+ LNL+    
Sbjct: 330 LSIKGNTKRL-ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP 388

Query: 409 RNI 411
            ++
Sbjct: 389 LSL 391

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
           ++ P     L+    ++  +    G FS    LE++ + +N++++  E +   +LP L  
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQ--KGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE 83

Query: 401 LNLASTN-LRNI 411
           + +   N L  I
Sbjct: 84  IRIEKANNLLYI 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L   +N I+ +          + +YL  N I    +    G    ++YL+L    +  +
Sbjct: 104 LHAANNNISRVS--CSRGQGKKNIYLANNKITMLRD-LDEGCRSRVQYLDLKLNEIDTV 159

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           + L +N+IT L D   G  S ++ L L+ N I          S   L++LNL    + ++
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 351 TCLKLPSNRITTLD--SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
             L L  N I T++   +     +LE L LQ N I    +V        LK L+L+S  L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL 203

Query: 409 RNI 411
             +
Sbjct: 204 AFM 206

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 340 DILKLLANFPVTCLKLPSNRITTLD-SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNL 398
           +I +          K+  + +     S+     +++EL L  N +        L     L
Sbjct: 4   EIKQNGNR--YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI-SAADLAPFTKL 60

Query: 399 KYLNLASTNLRNI 411
           + LNL+S  L   
Sbjct: 61  ELLNLSSNVLYET 73

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 339 ADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSL 395
           A + +   N  V  L L  N ++ +       +    LE L L  N +    E   L SL
Sbjct: 27  ASLRQSAWN--VKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLY---ETLDLESL 79

Query: 396 PNLKYLNLASTNLRNI 411
             L+ L+L +  ++ +
Sbjct: 80  STLRTLDLNNNYVQEL 95

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.7 bits (103), Expect = 7e-05
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L SN +     +  + S+L  L L  N +        L   P+++ L+ A+ N+  + 
Sbjct: 63  LNLSSNVLYETLDLESL-STLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVS 115

Query: 413 LN 414
            +
Sbjct: 116 CS 117

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L SN++  +       + +  + L+ N +V      AL    NL++ +L         
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE--KALRFSQNLEHFDLRGNGFHCGT 253

Query: 413 L 413
           L
Sbjct: 254 L 254

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 5/59 (8%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L    N I  +     +   L  L LQ NN+    +   L + P L  ++L+   L  I
Sbjct: 216 LDASHNSINVVR--GPVNVELTILKLQHNNLT---DTAWLLNYPGLVEVDLSYNELEKI 269

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 2/59 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           LKL  N +T    +      L E+ L  N +      +    +  L+ L +++  L  +
Sbjct: 237 LKLQHNNLTDTAWLLNY-PGLVEVDLSYNELEKI-MYHPFVKMQRLERLYISNNRLVAL 293

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +  N I  L   P +F     L  L L+ N++          + P L  L++++ NL 
Sbjct: 104 LYMGFNAIRYLP--PHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTTLSMSNNNLE 160

Query: 410 NI 411
            I
Sbjct: 161 RI 162

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L + +NR+  L+       +L+ L L  N+++             L+ L L   ++  +K
Sbjct: 283 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER--NQPQFDRLENLYLDHNSIVTLK 340

Query: 413 LN 414
           L+
Sbjct: 341 LS 342

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.8 bits (103), Expect = 8e-05
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N +++L    G+F     L  L +  NN+    + +   +  +L+ L L+S  L 
Sbjct: 128 LVLERNDLSSLP--RGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLT 184

Query: 410 NIKLN 414
           ++ L+
Sbjct: 185 HVDLS 189

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 8/59 (13%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L+L SNR+T +D    +  SL    +  N +      + L     ++ L+ +  ++  +
Sbjct: 176 LQLSSNRLTHVD--LSLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSINVV 226

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           +   ++ +  L  ++   F  +E L L +  I +  +  A      ++ L +    +R +
Sbjct: 56  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEI-DTYAFAYAHTIQKLYMGFNAIRYL 114

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N +  ++     F  LE LYL  N+IV       L +   LK L L+  +     
Sbjct: 306 LDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL----KLSTHHTLKNLTLSHNDWDCNS 361

Query: 413 L 413
           L
Sbjct: 362 L 362

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
              L L  N I T+      F     L+ L L         +  A  +LPNL+ L+L S+
Sbjct: 26  TERLLLSFNYIRTVT--ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 407 NLRNI 411
            +  +
Sbjct: 84  KIYFL 88

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 47.5 bits (113), Expect = 6e-06
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
           L L S++I  L   P  F     L EL L    + D   +     +L  L  L+L+   +
Sbjct: 78  LDLGSSKIYFLH--PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 409 RNIKLNK 415
           R++ L+ 
Sbjct: 136 RSLYLHP 142

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 17/86 (19%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 329 LTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVD 385
           L+ G +  + + + + L +  +  L L  N+I  +      F    +L+ L L  N + +
Sbjct: 273 LSHGFVFSLNSRVFETLKD--LKVLNLAYNKINKIA--DEAFYGLDNLQVLNLSYNLLGE 328

Query: 386 WGEVNALGSLPNLKYLNLASTNLRNI 411
               +    LP + Y++L   ++  I
Sbjct: 329 -LYSSNFYGLPKVAYIDLQKNHIAII 353

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 7/79 (8%)

Query: 340 DILKLLANFP-VTCLKLPSNRITTL--DSVPGMFSSLEELYLQENNIVDWGEV----NAL 392
           DIL  L   P +  L L  NR ++   D  P    SLE+L+L EN +    E     +  
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 393 GSLPNLKYLNLASTNLRNI 411
             L +L+ L L    L ++
Sbjct: 477 EGLSHLQVLYLNHNYLNSL 495

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L+L    ++      G F    +L  L L +N I       + G L +LK ++ +S  + 
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 410 NI 411
            +
Sbjct: 162 LV 163

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 8/77 (10%)

Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMF-----SSLEELYLQENNIVDWGEVNALGS 394
               L+    +       + I   D     F     SS+  L L    +          +
Sbjct: 232 QAFSLILAHHIMGAGFGFHNIKDPD--QNTFAGLARSSVRHLDLSHGFVFSLNS-RVFET 288

Query: 395 LPNLKYLNLASTNLRNI 411
           L +LK LNLA   +  I
Sbjct: 289 LKDLKVLNLAYNKINKI 305

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 353 LKLPSNRITTLDSV---PGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
           L L  N +           +F   S L+ LYL  N +           L  L+ L+L S 
Sbjct: 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPP-GVFSHLTALRGLSLNSN 514

Query: 407 NLRNI 411
            L  +
Sbjct: 515 RLTVL 519

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGM--FSSLE 374
           +  I     I  + L     +    + L AN     + L  NR+  LD +  +     L+
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQ 429

Query: 375 ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
            L L +N              P+L+ L L    L+  
Sbjct: 430 ILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLA 466

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L      + +L++ P G   +L+EL +  N I  +       +L NL++L+L+S  +++I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 346 ANFPVTC--LKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
            N P +   L L  N +  L      F S   L+ L L    I    E  A  SL +L  
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLG--SYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLST 80

Query: 401 LNLASTNLRNI 411
           L L    ++++
Sbjct: 81  LILTGNPIQSL 91

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)

Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
           + L L  N I +L    G F   SSL++L   E N+    E   +G L  LK LN+A   
Sbjct: 79  STLILTGNPIQSLA--LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNVAHNL 135

Query: 408 LRNIKLN 414
           +++ KL 
Sbjct: 136 IQSFKLP 142

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
              +P  +  S + L L  N +       +  S P L+ L+L+   ++ I
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTI 67

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 17/62 (27%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L    +  L   PG+F    +L+ LYLQ+N +      +    L NL +L L    + 
Sbjct: 110 LHLDRCGLQELG--PGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRIS 166

Query: 410 NI 411
           ++
Sbjct: 167 SV 168

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  NRI+++      F    SL+ L L +N +      +A   L  L  L L + NL 
Sbjct: 158 LFLHGNRISSVP--ERAFRGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLS 214

Query: 410 NI 411
            +
Sbjct: 215 AL 216

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKY 400
              P     + L  NRI+ +      F    +L  L+L  N +    +  A   L  L+ 
Sbjct: 28  VGIPAASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQ 84

Query: 401 LNLASTNLR 409
           L+L S N +
Sbjct: 85  LDL-SDNAQ 92

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L +VP G+ ++ + ++L  N I       +  +  NL  L L S  L  I
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPA-ASFRACRNLTILWLHSNVLARI 71

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 353 LKLPSN-RITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           L L  N ++ ++D  P  F     L  L+L    + + G       L  L+YL L    L
Sbjct: 85  LDLSDNAQLRSVD--PATFHGLGRLHTLHLDRCGLQELGP-GLFRGLAALQYLYLQDNAL 141

Query: 409 RNI 411
           + +
Sbjct: 142 QAL 144

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
           L L  NR+  +   P  F     L  LYL  NN+  +      AL  L  L+YL L  
Sbjct: 182 LLLHQNRVAHVH--PHAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYLRLND 234

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N + ++     +     +L  L +  N        ++      +++LNL+ST +R
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP--MPDSCQWPEKMRFLNLSSTGIR 423

Query: 410 NI 411
            +
Sbjct: 424 VV 425

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 5/59 (8%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           L L  N +++L      F   SSL+ L L  N     G  +   +L NL+ L + +   
Sbjct: 79  LDLSDNHLSSLS--SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVET 135

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 22/98 (22%), Positives = 47/98 (47%), Gaps = 12/98 (12%)

Query: 324 GHIHTLTLGNMG----YIWADILKLLANFP-VTCLKLPSNRITTLDSVPGMFS---SLEE 375
           G + T+T+  +     Y++ D+  + +    V  + + ++++  +           SLE 
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP--CSFSQHLKSLEF 338

Query: 376 LYLQENNIVDWGEVN--ALGSLPNLKYLNLASTNLRNI 411
           L L EN +V+    N    G+ P+L+ L L+  +LR++
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L S+RI T++     F    SLE L L +N++      +  G L +LKYLNL     +
Sbjct: 55  LILKSSRINTIE--GDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYLNLMGNPYQ 111

Query: 410 NIKLNKE 416
            + +   
Sbjct: 112 TLGVTSL 118

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
           +  L L  N+IT +    G   +   L+ L L+ + I    E +A  SL +L++L+L+  
Sbjct: 28  MKSLDLSFNKITYIG--HGDLRACANLQVLILKSSRINTI-EGDAFYSLGSLEHLDLSDN 84

Query: 407 NLRNI 411
           +L ++
Sbjct: 85  HLSSL 89

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N   TL  V  +F    +L+ L +                L +L  L + + +LR
Sbjct: 103 LNLMGNPYQTL-GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 410 NIK 412
           N +
Sbjct: 162 NYQ 164

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           +  L + +N +    S       L+ELY+  N +     +      P L  + ++   L+
Sbjct: 433 LEVLDVSNNNLD---SFSLFLPRLQELYISRNKLKT---LPDASLFPVLLVMKISRNQLK 486

Query: 410 NI 411
           ++
Sbjct: 487 SV 488

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 11/102 (10%), Positives = 34/102 (33%), Gaps = 12/102 (11%)

Query: 325 HIHTLTLGNMGYIWADILKLLANFP------VTCLKLPSNRITTLDSVPGMFS---SLEE 375
                TL  +G        +++         +  L +P   +        ++S    ++ 
Sbjct: 257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL--STVYSLLEKVKR 314

Query: 376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKEG 417
           + ++ + +      +    L +L++L+L+   +    L    
Sbjct: 315 ITVENSKV-FLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSA 355

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
             S+P G+ ++++ L L  N I   G    L +  NL+ L L S+ +  I
Sbjct: 17  FTSIPSGLTAAMKSLDLSFNKITYIGH-GDLRACANLQVLILKSSRINTI 65

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
              L L  NRI TL+     F+    LEEL L EN +    E  A  +L NL+ L L S 
Sbjct: 34  TRLLDLGKNRIKTLN--QDEFASFPHLEELELNENIVSAV-EPGAFNNLFNLRTLGLRSN 90

Query: 407 NLRNI 411
            L+ I
Sbjct: 91  RLKLI 95

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L++  N +  +      FS   SLE+L L++ N+       AL  L  L  L L   N+ 
Sbjct: 133 LEVGDNDLVYIS--HRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNIN 189

Query: 410 NIK 412
            I+
Sbjct: 190 AIR 192

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 18/106 (16%), Positives = 39/106 (36%), Gaps = 10/106 (9%)

Query: 311 NDTSGVMEQIFPQGHIHTLTLGNMG--YIWADILKLLANFPVTCLKLPSNRITTLDSVPG 368
                +        ++ +L++ +     +    ++ L    +  L L  N I+T++    
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY--LRFLNLSYNPISTIE--GS 266

Query: 369 MFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           M      L+E+ L    +    E  A   L  L+ LN++   L  +
Sbjct: 267 MLHELLRLQEIQLVGGQLAVV-EPYAFRGLNYLRVLNVSGNQLTTL 311

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L +  N+I  L     MF    +L+ L + +N++V      A   L +L+ L L   NL 
Sbjct: 109 LDISENKIVILL--DYMFQDLYNLKSLEVGDNDLVYI-SHRAFSGLNSLEQLTLEKCNLT 165

Query: 410 NI 411
           +I
Sbjct: 166 SI 167

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 6/88 (6%)

Query: 327 HTLTLGNMGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI 383
             L + +  Y+       L    +T L +    +T +            L  L L  N I
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVP--YLAVRHLVYLRFLNLSYNPI 260

Query: 384 VDWGEVNALGSLPNLKYLNLASTNLRNI 411
                 + L  L  L+ + L    L  +
Sbjct: 261 STIEG-SMLHELLRLQEIQLVGGQLAVV 287

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L+L    I  +      F     L+ L +     +D    N L  L NL  L++   NL 
Sbjct: 181 LRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL-NLTSLSITHCNLT 237

Query: 410 NI 411
            +
Sbjct: 238 AV 239

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L+L  N ++ ++  PG F+   +L  L L+ N +     +     L NL  L+++   + 
Sbjct: 61  LELNENIVSAVE--PGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKLDISENKIV 117

Query: 410 NI 411
            +
Sbjct: 118 IL 119

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
             +VP G+ +    L L +N I    + +   S P+L+ L L    +  +
Sbjct: 23  FVAVPEGIPTETRLLDLGKNRIKTLNQ-DEFASFPHLEELELNENIVSAV 71

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 325 HIHTLTLGN--MGYIWADILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQ 379
           ++  L L    +  I   +L  L    +  ++L   ++  ++  P  F     L  L + 
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLR--LQEIQLVGGQLAVVE--PYAFRGLNYLRVLNVS 304

Query: 380 ENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
            N +    E +   S+ NL+ L L S  L 
Sbjct: 305 GNQLTTL-EESVFHSVGNLETLILDSNPLA 333

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 14/59 (23%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           L L  N++  L  +  M     SL++L + +N++    +        +L  LN++S  L
Sbjct: 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 2/63 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L  N++  +        +L+ L L  N           G++  LK+L L++T+L    
Sbjct: 74  LDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 413 LNK 415
           +  
Sbjct: 132 VLP 134

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 339 ADILKLLA-NFP-VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALG 393
           A  L+++  N P +  L L +NR+  LD +  +     +L+ L L  N +    E++ + 
Sbjct: 159 AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIK 218

Query: 394 SLPNLKYLNL 403
            L  L+ L L
Sbjct: 219 GLK-LEELWL 227

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL-PNLKYLNLASTNLR 409
             L   S    TL  +      L  L L  N +    +++++    PNLK LNL+   L+
Sbjct: 150 VVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209

Query: 410 NIK 412
           + +
Sbjct: 210 SER 212

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           + L +N+IT L D   G  S ++ L L+ N I          S   L++LNL    + ++
Sbjct: 125 IYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 351 TCLKLPSNRITTLD--SVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
             L L  N I T++   +     +LE L LQ N I    +V        LK L+L+S  L
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKL 203

Query: 409 RNI 411
             +
Sbjct: 204 AFM 206

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLP 396
           +I +          K+  + +        +     +++EL L  N +        L    
Sbjct: 4   EIKQNGNR--YKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLSQI-SAADLAPFT 58

Query: 397 NLKYLNLASTNLRNI 411
            L+ LNL+S  L   
Sbjct: 59  KLELLNLSSNVLYET 73

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 7/62 (11%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L SN +     +  + S+L  L L  N +        L   P+++ L+ A+ N+  + 
Sbjct: 63  LNLSSNVLYETLDLESL-STLRTLDLNNNYV------QELLVGPSIETLHAANNNISRVS 115

Query: 413 LN 414
            +
Sbjct: 116 CS 117

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 5e-05
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L L SN++  +       + +  + L+ N +V   +  AL    NL++ +L         
Sbjct: 196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFDLRGNGFHCGT 253

Query: 413 LNK 415
           L  
Sbjct: 254 LRD 256

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 339 ADILKLLANFPVTCLKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSL 395
           A + +   N  V  L L  N ++ +          + LE L L  N +    E   L SL
Sbjct: 27  ASLRQSAWN--VKELDLSGNPLSQIS--AADLAPFTKLELLNLSSNVLY---ETLDLESL 79

Query: 396 PNLKYLNLASTNLRNI 411
             L+ L+L +  ++ +
Sbjct: 80  STLRTLDLNNNYVQEL 95

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           +T L   ++ IT +  +    + L +L    NNI     ++ L    NL YL   S  L 
Sbjct: 44  LTSLDCHNSSITDMTGIEK-LTGLTKLICTSNNITT---LD-LSQNTNLTYLACDSNKLT 98

Query: 410 NIKLNK 415
           N+ +  
Sbjct: 99  NLDVTP 104

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L    N +T +D      + L EL    N  +   +   +     L  L+ +   +  
Sbjct: 130 TYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITE 184

Query: 411 IKLNK 415
           + +++
Sbjct: 185 LDVSQ 189

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L +  +T LD      + L+ L     +I D    +++G +P L     A      
Sbjct: 321 VYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQD---FSSVGKIPALNNNFEAEGQTIT 375

Query: 411 IKLNK 415
           +    
Sbjct: 376 MPKET 380

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK 412
           L   +N IT LD        L  L    N + +   ++ +  L  L Y + +   L  + 
Sbjct: 196 LNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE---ID-VTPLTQLTYFDCSVNPLTELD 249

Query: 413 LNK 415
           ++ 
Sbjct: 250 VST 252

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 7/65 (10%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L      +  +D      + L     +    +   +   +     L  L+  +  +  
Sbjct: 257 TTLHCIQTDLLEID--LTHNTQLIYFQAEGCRKIKELD---VTHNTQLYLLDCQAAGITE 311

Query: 411 IKLNK 415
           + L++
Sbjct: 312 LDLSQ 316

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           T L   SN++T +D      + L       N + +      + +L  L  L+   T+L  
Sbjct: 215 TFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTE----LDVSTLSKLTTLHCIQTDLLE 268

Query: 411 IKLNK 415
           I L  
Sbjct: 269 IDLTH 273

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 342 LKLLANFP-VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
           +  +     +T L   SN ITTLD      ++L  L    N + +      +  L  L Y
Sbjct: 57  MTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL----DVTPLTKLTY 110

Query: 401 LNLASTNLRNIKLNK 415
           LN  +  L  + +++
Sbjct: 111 LNCDTNKLTKLDVSQ 125

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 345 LANFPVTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L    V    L  ++I  L  SV   F+ LE+L L +N I    + NA   L +L  LNL
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNL 330

Query: 404 ASTNLRNI 411
           +   L +I
Sbjct: 331 SQNFLGSI 338

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
           V  + L  N I  L+     FS    L+ L +++         N    L +L  L L   
Sbjct: 32  VNYVDLSLNSIAELN--ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 407 NLRNI 411
               +
Sbjct: 90  QFLQL 94

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWG-EVNALGSLPNLKYLNLASTNL 408
           LKL  N+   L+   G F   ++LE L L + N+       N    L +L+ L L   N+
Sbjct: 84  LKLDYNQFLQLE--TGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141

Query: 409 RNIK 412
           + I+
Sbjct: 142 KKIQ 145

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N + ++D    MF     LE L L  N+I   G+  +   LPNLK L L +  L+
Sbjct: 328 LNLSQNFLGSID--SRMFENLDKLEVLDLSYNHIRALGD-QSFLGLPNLKELALDTNQLK 384

Query: 410 NI 411
           ++
Sbjct: 385 SV 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L    +         F   +SLE L L++NNI      +   ++     L+L    ++
Sbjct: 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167

Query: 410 NI 411
           +I
Sbjct: 168 SI 169

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           +   +N +  L   P +  SLE +    N +    E+  L +LP L  +   +  L+ +
Sbjct: 200 IYADNNSLKKL---PDLPLSLESIVAGNNILE---ELPELQNLPFLTTIYADNNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 6/59 (10%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           + + +N +  L   P +  SLE +    N +    E+  L +LP L  +   + +L+ +
Sbjct: 158 IDVDNNSLKKL---PDLPPSLEFIAAGNNQLE---ELPELQNLPFLTAIYADNNSLKKL 210

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 9/64 (14%), Positives = 26/64 (40%), Gaps = 5/64 (7%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-----NALGSLPNLKYLNLASTN 407
           + +  N  ++  + P   S L+   ++     +   +       + + P+L  L + S +
Sbjct: 758 MDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817

Query: 408 LRNI 411
           +R +
Sbjct: 818 IRKV 821

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 5/61 (8%)

Query: 353 LKLPSNRITTLDSVPGMF--SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             +  N +    +   +     L  L    N +     + A G+   L  L L    +  
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR---HLEAFGTNVKLTDLKLDYNQIEE 609

Query: 411 I 411
           I
Sbjct: 610 I 610

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 10/71 (14%)

Query: 351 TCLKLPSNRITTLDSVP----------GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY 400
             L +  NR  +   +                ++  Y+  NN+ ++    +L  +  L  
Sbjct: 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577

Query: 401 LNLASTNLRNI 411
           L+     +R++
Sbjct: 578 LDCVHNKVRHL 588

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 9/57 (15%), Positives = 21/57 (36%)

Query: 355 LPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           +P N +   D        L  + L+ N +    +     +LP L  ++++     + 
Sbjct: 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF 768

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.4 bits (97), Expect = 5e-04
 Identities = 15/145 (10%), Positives = 39/145 (26%), Gaps = 19/145 (13%)

Query: 282 KASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADI 341
             S      E +  D   E ++  ++          +++     +      N        
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 342 LKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNI-----------VDWGEVN 390
              + +   T +   +NRIT +       + L+ +Y   +              +     
Sbjct: 420 DSRI-SLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAK 478

Query: 391 -------ALGSLPNLKYLNLASTNL 408
                  +  +L +L  + L +   
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPN 503

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 41.0 bits (96), Expect = 7e-04
 Identities = 9/60 (15%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           LKL  N+I  + +        +E L    N +     +    S+  +  ++ +   + + 
Sbjct: 600 LKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 357 SNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
              +  L+     F     +  + ++    + + + +AL  LP LK+L + +T L+  
Sbjct: 65  DVTLQQLE--SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 350 VTCLKLPSNRITTLDSVPGMFS---SLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST 406
              LKL    + T+      FS   ++  +Y+  +  +   E ++  +L  + ++ + +T
Sbjct: 33  TQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 407 N-LRNI 411
             L  I
Sbjct: 91  RNLTYI 96

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 5/62 (8%)

Query: 353 LKLPSNRITTLDSVPGMF--SSLEELYLQENNIVDWGEVNALGSLPN-LKYLNLASTNLR 409
           LKL +N  T++      F  + L+ +YL +N  +   + +A G + +    L+++ T++ 
Sbjct: 161 LKLYNNGFTSVQ--GYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

Query: 410 NI 411
            +
Sbjct: 219 AL 220

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
           L L +N I  +D     F   + L++LYL +N I       +     LP L  L+L+S  
Sbjct: 117 LLLYNNHIVVVD--RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174

Query: 408 LRNI 411
           L+ +
Sbjct: 175 LKKL 178

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLASTN 407
           L L SN + TLD    +F    +LE L L  N+I  VD     A   +  L+ L L+   
Sbjct: 93  LDLSSNHLHTLD--EFLFSDLQALEVLLLYNNHIVVVDRN---AFEDMAQLQKLYLSQNQ 147

Query: 408 LRNI 411
           +   
Sbjct: 148 ISRF 151

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.2 bits (94), Expect = 9e-04
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 346 ANFPV--TCLKLPSNRITTL--DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL 401
            + P     L L  N ++ L  +  P   ++L  L L  N++       A   +PNL+YL
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVPVPNLRYL 93

Query: 402 NLASTNLRNI 411
           +L+S +L  +
Sbjct: 94  DLSSNHLHTL 103

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW----GEV-NALGSLPNLKYLNLASTN 407
           + L  N  +   + P   S+L+   ++            E    +   P+L  L + S +
Sbjct: 518 IDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 408 LRNI 411
           +R +
Sbjct: 578 IRKV 581

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMF---SSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           + +  N + T   V         L  L    N +   G++ A GS   L  LNLA   + 
Sbjct: 310 IYIGYNNLKTF-PVETSLQKMKKLGMLECLYNQLE--GKLPAFGSEIKLASLNLAYNQIT 366

Query: 410 NI 411
            I
Sbjct: 367 EI 368

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 353 LKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           L L  N+IT +  +  G    +E L    N +     +    S+  +  ++ +   + ++
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSV 417

Query: 412 KLN 414
              
Sbjct: 418 DGK 420

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 353 LKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           L +  N+I+    V      +LE L +  NN      +  LG    L++L+++   L
Sbjct: 183 LAISGNKIS--GDVDVSRCVNLEFLDVSSNNFS--TGIPFLGDCSALQHLDISGNKL 235

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 3e-04
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 353 LKLPSNRIT-TL-DSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNLKYLNLASTNL 408
           L L  N+ T  + D + G   +L  L L  N+    G V    GS   L+ L L+S N 
Sbjct: 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFY--GAVPPFFGSCSLLESLALSSNNF 330

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
           L L    +  +    G+ + L  L L  N +       +   LP +  L+L      +
Sbjct: 258 LNLSFTGLKQVP--KGLPAKLSVLDLSYNRL---DRNPSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 40.7 bits (95), Expect = 5e-04
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 353 LKLPSNRITTLDSVP----GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNL 408
           L L +  + T   V          L+ L L  N++ D     +      L  LNL+ T L
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 409 RNI 411
           + +
Sbjct: 266 KQV 268

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 14/61 (22%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN 410
             L L  N++ +L  +     +L  L +  N +     + AL  L  L+ L L    L+ 
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKT 138

Query: 411 I 411
           +
Sbjct: 139 L 139

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 346 ANFPV--TCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
            + P   T L L  N + T             L +L L    +    ++   G+LP L  
Sbjct: 27  PDLPKDTTILHLSENLLYTFS--LATLMPYTRLTQLNLDRAEL---TKLQVDGTLPVLGT 81

Query: 401 LNLASTNLRNI 411
           L+L+   L+++
Sbjct: 82  LDLSHNQLQSL 92

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 353 LKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           L L  N + TL   PG+ +    LE+L L  NN+ +      L  L NL  L L   +L 
Sbjct: 129 LYLKGNELKTLP--PGLLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLY 185

Query: 410 NI 411
            I
Sbjct: 186 TI 187

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)

Query: 340 DILKLLANFPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEV-NALGSLPNL 398
           D+L+         L+L S  +          S L+ + +    ++   E+ + +     L
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM---ELPDTMQQFAGL 129

Query: 399 KYLNLASTNLRNI 411
           + L LA   LR +
Sbjct: 130 ETLTLARNPLRAL 142

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 70/478 (14%), Positives = 149/478 (31%), Gaps = 126/478 (26%)

Query: 1   MDSRVSNAGKTHDEIEQAV--PFIEDL------DLSRNLLASWFAVGEITCQ---LKHLR 49
           MD         + +I       F+++       D+ +++L+    +  I      +    
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKE-EIDHIIMSKDAVSGTL 65

Query: 50  HLNLRIRLKSSSA----------PAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL 99
            L   +  K                + +L   +       ++    ++++   L+     
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY----- 120

Query: 100 SSLRFTKNPILAEERVVSSREKTIARL-GGLKLLN-----------GS-----AIE--RQ 140
                  N + A+  V  SR +   +L   L  L            GS     A++    
Sbjct: 121 -----NDNQVFAKYNV--SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173

Query: 141 ERQGSEYDYIKEFGAVWLD--EKRRAEFLEAN-----PRVGDNYFQVMEDDIGLRVCDSE 193
            +   + D    F   WL+       E +         ++  N+    +    +++    
Sbjct: 174 YKVQCKMD----FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 194 GHRGTIRYVGSVEGTQG------VWYGIDWDS---------ETRGKHDGSHNGVKYFWTH 238
                 R + S            V     W++          TR K       V  F + 
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK------QVTDFLSA 283

Query: 239 STTSGSFMRRDKLNFGSSFMEALHRKYVETD-----------NELTVR---ENVEEVKAS 284
           +TT+   +    +      +++L  KY++             N   +    E++ +  A+
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343

Query: 285 INAPFLELVGFDQVHE--EQNTNKLPIPNDTSGVMEQ--IFPQG-HIHTLTLGNMGYIWA 339
            +    + V  D++    E + N L  P +   + ++  +FP   HI T+ L     IW 
Sbjct: 344 WD--NWKHVNCDKLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAHIPTILL---SLIWF 397

Query: 340 D--------ILKLLANFPVTCLKLPSNRITTLDSVPGMFSSL----EELYLQENNIVD 385
           D        ++  L  +  + ++      T   S+P ++  L    E  Y    +IVD
Sbjct: 398 DVIKSDVMVVVNKLHKY--SLVEKQPKESTI--SIPSIYLELKVKLENEYALHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 54/376 (14%), Positives = 114/376 (30%), Gaps = 127/376 (33%)

Query: 5   VSNAGKTHDEIEQ-AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLRIRLKSSSAP 63
           +S A  TH  ++  ++    D    ++LL  +     + C+ + L    L         P
Sbjct: 281 LSAATTTHISLDHHSMTLTPDE--VKSLLLKY-----LDCRPQDLPREVLTT------NP 327

Query: 64  -AHSYLAEVV--------FFVHLGRTLCDE-DFVKEGSLLHYLPKLSSLRFTKNPILAEE 113
              S +AE +         + H+    CD+   + E SL    P      F +  +    
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVN---CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 114 RVVSSREKTIARL-GGL----------KLLNGSAIERQERQGSEYDYIKEFGAVWLDEKR 162
             +      ++ +   +          KL   S +E+Q ++ +         +++L+ K 
Sbjct: 385 AHIP--TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLELKV 437

Query: 163 RAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTI-RYVGSVEGTQGVWYGIDWDSET 221
           +                 +E++  L       HR  +  Y         +    D D   
Sbjct: 438 K-----------------LENEYAL-------HRSIVDHY--------NIPKTFDSDDLI 465

Query: 222 RGKHDGSHNGVKYFWTH---------STTSGSFMRRDKLNFGSSFMEA------------ 260
               D       YF++H              +  R   L+F   F+E             
Sbjct: 466 PPYLDQ------YFYSHIGHHLKNIEHPERMTLFRMVFLDF--RFLEQKIRHDSTAWNAS 517

Query: 261 -----------LHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTN--KL 307
                       ++ Y+  DN+      V  +       FL  +  + +   + T+  ++
Sbjct: 518 GSILNTLQQLKFYKPYI-CDNDPKYERLVNAILD-----FLPKIE-ENLICSKYTDLLRI 570

Query: 308 PIPNDTSGVMEQIFPQ 323
            +  +   + E+   Q
Sbjct: 571 ALMAEDEAIFEEAHKQ 586

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
             +   +N+IT ++   G F   S + E+ L  N +  V          L +LK L L S
Sbjct: 60  RKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHK---MFKGLESLKTLMLRS 114

Query: 406 TNLRNI 411
             +  +
Sbjct: 115 NRITCV 120

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 351 TCLKLPSNRITTLDSVPGMFSSLEELYLQEN--NIVDWGEVNALGSLP-NLKYLNLASTN 407
             L L  N +     V  M  ++  L   +   N ++    +   +   ++  LNL+S  
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 408 L 408
           L
Sbjct: 440 L 440

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 351 TCLKLPSNRITTLDSVPGMF---SSLEELYLQENNI--VDWGEVNALGSLPNLKYLNLAS 405
             + L +N+I+ L   P  F    SL  L L  N I  +          L +L+ L L +
Sbjct: 59  RRIDLSNNQISELA--PDAFQGLRSLNSLVLYGNKITELPKS---LFEGLFSLQLLLLNA 113

Query: 406 TNLRNI 411
             +  +
Sbjct: 114 NKINCL 119

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 39.6 bits (93), Expect = 9e-04
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 8/71 (11%)

Query: 346 ANFP--VTCLKLPSNRITTLDSVPGMFSS---LEELYLQENNIVDWGEVNALGSLPNLKY 400
            N P  +T ++L  N I  +   PG FS    L  + L  N I +    +A   L +L  
Sbjct: 28  TNLPETITEIRLEQNTIKVIP--PGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNS 84

Query: 401 LNLASTNLRNI 411
           L L    +  +
Sbjct: 85  LVLYGNKITEL 95

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR 409
           + C +     + +L  +PG   +L ELY++    +   E+  L  L  L+ L +  + LR
Sbjct: 13  LRCTR--DGALDSLHHLPGA-ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69

Query: 410 NI 411
            +
Sbjct: 70  FV 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	421
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.89
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.87
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.81
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.79
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.78
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.77
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.77
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.76
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.76
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.75
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.73
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.73
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.73
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.72
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.71
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.68
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.67
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.67
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.67
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.67
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.66
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.65
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.64
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.63
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.62
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.61
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.61
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.61
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.59
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.59
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.58
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.58
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.57
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.57
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.57
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.57
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.56
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.55
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.54
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.54
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.53
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.52
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.51
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.5
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.5
2z0w_A	96	CAP-Gly domain-containing linker protein 4; altern	99.49
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.45
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.45
4b6m_A	84	Tubulin-specific chaperone, putative; structural p	99.44
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.44
1lpl_A	95	Hypothetical 25.4 kDa protein F53F4.3 in chromosom	99.44
2e3i_A	86	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.43
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.43
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
3rdv_A	72	CAP-Gly domain-containing linker protein 1; cytosk	99.43
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.41
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.41
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.39
1ixd_A	104	Cylindromatosis tumour-suppressor CYLD; structural	99.38
2e3h_A	90	Restin; CAP-Gly, cytoplasmic linker, tubulin bindi	99.37
2cp2_A	95	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.36
1whg_A	113	Tubulin specific chaperone B; microtubule binding,	99.36
2cp0_A	95	Clipr-59 protein, clipr59; microtubule binding, cy	99.35
2cp3_A	84	CLIP-115, KIAA0291; microtubule binding, cytoskele	99.34
1whh_A	102	Clipr-59; microtubule binding, trans-golgi network	99.34
1whl_A	95	Cylindromatosis tumor suppressor CYLD; deubiquitin	99.34
1txq_A	93	Dynactin 1; protein complex, structural protein/pr	99.34
1whk_A	91	1700024K14RIK, riken cDNA 1700024K14; structural g	99.33
1whj_A	102	1700024K14RIK, riken cDNA 1700024K14; structural g	99.32
2cp6_A	172	Restin; microtubule binding, cytoskeleton associat	99.32
2coz_A	122	CAP350, centrosome-associated protein 350; microtu	99.31
2coy_A	112	Dynactin-1; microtubule binding, cytoskeleton asso	99.3
2cp5_A	141	Restin; microtubule binding, cytoskeleton associat	99.29
2cow_A	100	Kinesin-like protein KIF13B; microtubule binding,	99.28
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.24
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.24
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.23
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.2
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.19
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.17
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.16
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.13
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.1
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.1
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.1
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.1
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.08
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.08
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.01
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.0
1whm_A	92	Cylindromatosis tumor suppressor CYLD; deubiquitin	98.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.98
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.96
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.96
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.95
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.94
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.93
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.91
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.91
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.88
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.88
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.88
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.85
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.83
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.82
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.8
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.7
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.65
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.46
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.41
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.38
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.92
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.16
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.13
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	96.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	96.24
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.67
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	95.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	93.27
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	92.58
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	88.55
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.9
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	86.82
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.23

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.89  E-value=1.2e-24  Score=233.42  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=85.7

Q ss_pred             CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcc
Q psy9363         312 DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEV  389 (421)
Q Consensus       312 ~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~  389 (421)
                      +.+|..+..+  ++|+.|+|++|.++ +.+|..+..++. +.|+|++|+++ .+|..++.+++|+.|||++|++ .+.++
T Consensus       622 g~~~~~~~~l--~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l-~g~ip  697 (768)
T 3rgz_A          622 GHTSPTFDNN--GSMMFLDMSYNMLS-GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL-DGRIP  697 (768)
T ss_dssp             EECCCSCSSS--BCCCEEECCSSCCB-SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC-EECCC
T ss_pred             ccCchhhhcc--ccccEEECcCCccc-ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc-cCcCC
Confidence            5567777888  89999999999998 556677888888 99999999998 6777778899999999999999 44557


Q ss_pred             cccCccccccccccccccCcccCCCCCCCC
Q psy9363         390 NALGSLPNLKYLNLASTNLRNIKLNKEGHY  419 (421)
Q Consensus       390 ~~l~~l~~L~~L~Ls~N~l~~i~~p~~~~~  419 (421)
                      ..++.++.|+.|++++|++++ ++|..+.|
T Consensus       698 ~~l~~l~~L~~L~ls~N~l~g-~iP~~~~~  726 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNNLSG-PIPEMGQF  726 (768)
T ss_dssp             GGGGGCCCCSEEECCSSEEEE-ECCSSSSG
T ss_pred             hHHhCCCCCCEEECcCCcccc-cCCCchhh
Confidence            788899999999999999988 77776554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.87  E-value=5.6e-23  Score=220.51  Aligned_cols=133  Identities=18%  Similarity=0.105  Sum_probs=91.6

Q ss_pred             cceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHH---------
Q psy9363         278 VEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKL---------  344 (421)
Q Consensus       278 ~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~---------  344 (421)
                      .....+.++.+.+.......+....+|+.+++++    +.+|..+..+  ++|+.|+|++|.++ +.+|..         
T Consensus       490 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l--~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLFN-GTIPAAMFKQSGKIA  566 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC--TTCCEEECCSSEEE-SBCCGGGGTTTTCBC
T ss_pred             CCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC--CCCCEEECCCCccC-CcCChHHhcccchhh
Confidence            3444555555544432223333333666777665    5677778888  88888888888876 222211         


Q ss_pred             -------------------------------------------------------------hccCCC-cEEEccCCcCc-
Q psy9363         345 -------------------------------------------------------------LANFPV-TCLKLPSNRIT-  361 (421)
Q Consensus       345 -------------------------------------------------------------~~~l~~-~~L~L~~N~l~-  361 (421)
                                                                                   +..++. +.|+|++|+++ 
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g  646 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG  646 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence                                                                         122456 78999999998 


Q ss_pred             ccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCC
Q psy9363         362 TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNK  415 (421)
Q Consensus       362 ~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~  415 (421)
                      .+|..++.++.|+.|+|++|++ .+.++..++.+++|+.|||++|++++ .+|.
T Consensus       647 ~ip~~l~~l~~L~~L~Ls~N~l-~g~ip~~l~~L~~L~~LdLs~N~l~g-~ip~  698 (768)
T 3rgz_A          647 YIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDG-RIPQ  698 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCC-CSCCCGGGGGCTTCCEEECCSSCCEE-CCCG
T ss_pred             cCCHHHhccccCCEEeCcCCcc-CCCCChHHhCCCCCCEEECCCCcccC-cCCh
Confidence            5776678899999999999999 44557789999999999999999987 4443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.87  E-value=2.2e-22  Score=211.36  Aligned_cols=84  Identities=15%  Similarity=0.243  Sum_probs=47.4

Q ss_pred             CccEEEeeCcccchhhHHHHhc--cCCC-cEEEccCCcCcccCCCCCCCCCCcEEECc------CCCCCCCCcccccCcc
Q psy9363         325 HIHTLTLGNMGYIWADILKLLA--NFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQ------ENNIVDWGEVNALGSL  395 (421)
Q Consensus       325 ~L~~L~Ls~N~l~~~~i~~~~~--~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls------~N~l~~~~~~~~l~~l  395 (421)
                      +|+.|+|++|.++  .++..+.  .+++ +.|+|++|+|+++|..+..+++|+.|+|+      +|++.. ..+..++.+
T Consensus       489 ~L~~L~Ls~N~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l  565 (636)
T 4eco_A          489 LLTSIDLRFNKLT--KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLC  565 (636)
T ss_dssp             GCCEEECCSSCCC--BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGC
T ss_pred             CccEEECcCCcCC--ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcC
Confidence            6666666666665  2223333  5566 66666666666666555566666666663      333421 224455566


Q ss_pred             ccccccccccccCccc
Q psy9363         396 PNLKYLNLASTNLRNI  411 (421)
Q Consensus       396 ~~L~~L~Ls~N~l~~i  411 (421)
                      ++|+.|+|++|+++.|
T Consensus       566 ~~L~~L~Ls~N~l~~i  581 (636)
T 4eco_A          566 PSLTQLQIGSNDIRKV  581 (636)
T ss_dssp             SSCCEEECCSSCCCBC
T ss_pred             CCCCEEECCCCcCCcc
Confidence            6666666666666443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=6.8e-21  Score=191.56  Aligned_cols=360  Identities=14%  Similarity=0.060  Sum_probs=193.2

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      .++|++|||++|.|++  ..+..++++++|++|+| +|.+.....+..+..+++|++|+|++|.+....+..   +..++
T Consensus        29 ~~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~  103 (455)
T 3v47_A           29 PAHVNYVDLSLNSIAE--LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA---FNGLA  103 (455)
T ss_dssp             CTTCCEEECCSSCCCE--ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTT---TTTCT
T ss_pred             CCccCEEEecCCccCc--CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhh---ccCcc
Confidence            3689999999999984  34666888999999999 577763223445677899999999888765543333   66799


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccH-HHHHHhhccccchhhHHHHHHHhCCCCCCc
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSE-YDYIKEFGAVWLDEKRRAEFLEANPRVGDN  176 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n  176 (421)
                      +|++|+|++|.+.+..    .....++.+++|++|+++........... +..+..+...               .+..|
T Consensus       104 ~L~~L~L~~n~l~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L---------------~L~~n  164 (455)
T 3v47_A          104 NLEVLTLTQCNLDGAV----LSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL---------------DLTFN  164 (455)
T ss_dssp             TCCEEECTTSCCBTHH----HHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE---------------ECTTC
T ss_pred             cCCEEeCCCCCCCccc----cCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE---------------eCCCC
Confidence            9999999999983311    11123788899999988753221110000 0000000000               11123


Q ss_pred             ccccccCCCC-----ceEEeecCceeEEEEecccCCCCC--------cEEEEEecCCCCCCCCCeeCCEEeEecCCCCce
Q psy9363         177 YFQVMEDDIG-----LRVCDSEGHRGTIRYVGSVEGTQG--------VWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG  243 (421)
Q Consensus       177 ~~~~~~~~i~-----~rv~~l~~~~~~~r~~G~ip~~~g--------~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~g  243 (421)
                      .+.+......     ..+..+  ++..+.+.+..+...+        ....++..++..++..+.... .++.......-
T Consensus       165 ~l~~~~~~~l~~l~~~~L~~L--~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~~~~~~~L  241 (455)
T 3v47_A          165 KVKSICEEDLLNFQGKHFTLL--RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK-RFFDAIAGTKI  241 (455)
T ss_dssp             CBSCCCTTTSGGGTTCEEEEE--ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHH-HHHHHTTTCCE
T ss_pred             cccccChhhhhcccccccccc--ccccCcccccchhhccccccccccccceeeeEecCCCcccccchh-hhhccccccce
Confidence            3222111000     111111  1111221111111100        112344444443322221100 00000000000


Q ss_pred             eEEecCcc-ccCchhHHHhhhhhccccchhhhc--cccceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCch
Q psy9363         244 SFMRRDKL-NFGSSFMEALHRKYVETDNELTVR--ENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGV  316 (421)
Q Consensus       244 sf~~~~~l-~~g~~~~~al~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~  316 (421)
                      ....+... ..+..+..   ..+. ......+.  .......+.++...+.......+....+|+.+++++    +..+.
T Consensus       242 ~~L~l~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  317 (455)
T 3v47_A          242 QSLILSNSYNMGSSFGH---TNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN  317 (455)
T ss_dssp             EEEECTTCTTTSCCTTC---CSSC-CCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT
T ss_pred             eeEeeccccccccccch---hhhc-cCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChh
Confidence            00000000 00000000   0000 00000000  012344555655555444333343333777777776    34466


Q ss_pred             hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccC-CCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLD-SVPGMFSSLEELYLQENNIVDWGEVNALGS  394 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  394 (421)
                      .+..+  ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++.++ ..+..+++|+.|+|++|+|+.++ ...++.
T Consensus       318 ~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~  393 (455)
T 3v47_A          318 AFWGL--THLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP-DGIFDR  393 (455)
T ss_dssp             TTTTC--TTCCEEECCSSCCC-EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTTTTT
T ss_pred             HhcCc--ccCCEEECCCCccC-CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC-HhHhcc
Confidence            78888  99999999999998 222355677888 99999999999774 44588999999999999998765 456788


Q ss_pred             cccccccccccccCcccCCC
Q psy9363         395 LPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       395 l~~L~~L~Ls~N~l~~i~~p  414 (421)
                      +++|+.|++++|+++. ..|
T Consensus       394 l~~L~~L~l~~N~l~~-~~~  412 (455)
T 3v47_A          394 LTSLQKIWLHTNPWDC-SCP  412 (455)
T ss_dssp             CTTCCEEECCSSCBCC-CTT
T ss_pred             CCcccEEEccCCCccc-CCC
Confidence            9999999999999986 444

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.84  E-value=6.9e-22  Score=212.87  Aligned_cols=82  Identities=17%  Similarity=0.253  Sum_probs=40.8

Q ss_pred             CccEEEeeCcccchhhHHHHhc--cCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcC------CCCCCCCcccccCcc
Q psy9363         325 HIHTLTLGNMGYIWADILKLLA--NFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQE------NNIVDWGEVNALGSL  395 (421)
Q Consensus       325 ~L~~L~Ls~N~l~~~~i~~~~~--~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~l~~l  395 (421)
                      +|+.|+|++|.|+  .++..+.  .+++ +.|+|++|+|+++|..+..+++|+.|+|++      |++. ...+..++.+
T Consensus       729 ~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~-~~ip~~l~~L  805 (876)
T 4ecn_A          729 LLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRIL-RQWPTGITTC  805 (876)
T ss_dssp             GCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCC-CCCCTTGGGC
T ss_pred             CccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccc-ccChHHHhcC
Confidence            5555555555555  1222232  4455 555555555555554445555555555544      3332 1223345555


Q ss_pred             ccccccccccccCc
Q psy9363         396 PNLKYLNLASTNLR  409 (421)
Q Consensus       396 ~~L~~L~Ls~N~l~  409 (421)
                      ++|+.|+|++|+|.
T Consensus       806 ~~L~~L~Ls~N~L~  819 (876)
T 4ecn_A          806 PSLIQLQIGSNDIR  819 (876)
T ss_dssp             SSCCEEECCSSCCC
T ss_pred             CCCCEEECCCCCCC
Confidence            55555555555553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=1.3e-21  Score=205.57  Aligned_cols=102  Identities=14%  Similarity=0.084  Sum_probs=73.7

Q ss_pred             CCCccCCCC---CCCc-hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccC-------CC-cEEEccCCcCcccCCCCC-
Q psy9363         303 NTNKLPIPN---DTSG-VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANF-------PV-TCLKLPSNRITTLDSVPG-  368 (421)
Q Consensus       303 ~L~~l~l~~---~~~~-~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l-------~~-~~L~L~~N~l~~l~~~~~-  368 (421)
                      +|+.+.+++   ..+| ..+..+  ++|++|+|++|.++ .+.  ..+...       ++ +.|+|++|+|+.+|..+. 
T Consensus       434 ~L~~L~Ls~N~l~~lp~~~~~~l--~~L~~L~Ls~N~l~~i~~--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  509 (636)
T 4eco_A          434 NVSSINLSNNQISKFPKELFSTG--SPLSSINLMGNMLTEIPK--NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA  509 (636)
T ss_dssp             CEEEEECCSSCCCSCCTHHHHTT--CCCSEEECCSSCCSBCCS--SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred             CCCEEECcCCccCcCCHHHHccC--CCCCEEECCCCCCCCcCH--HHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence            555666654   3344 445668  89999999999988 221  222222       27 899999999998887665 


Q ss_pred             -CCCCCcEEECcCCCCCCCCcccccCccccccccccc------cccCcc
Q psy9363         369 -MFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA------STNLRN  410 (421)
Q Consensus       369 -~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls------~N~l~~  410 (421)
                       .+++|+.|+|++|+|+.+  +..+..+++|+.|+|+      +|++.+
T Consensus       510 ~~l~~L~~L~Ls~N~l~~i--p~~~~~l~~L~~L~Ls~N~~ls~N~l~~  556 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSKF--PTQPLNSSTLKGFGIRNQRDAQGNRTLR  556 (636)
T ss_dssp             TTCTTCCEEECCSSCCSSC--CCGGGGCSSCCEEECCSCBCTTCCBCCC
T ss_pred             ccCCCcCEEECCCCCCCCc--ChhhhcCCCCCEEECCCCcccccCcccc
Confidence             889999999999999763  5578889999999994      566665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.82  E-value=3.7e-21  Score=184.53  Aligned_cols=257  Identities=18%  Similarity=0.142  Sum_probs=176.7

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc--cccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR--IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~--N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      .++++|+|++|.|+....+|..++++++|++|+|+  |.+. +.+|..++.+++|++|+|++|.+.+..+..   +..++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~-~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~---~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGG---GGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCccc-ccCChhHhcCCCCCEEECcCCeeCCcCCHH---HhCCC
Confidence            57999999999999322678889999999999994  8888 578888899999999999988876555543   67899


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCcc
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNY  177 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~  177 (421)
                      +|++|++++|.+..      ..+..++.+++|++|+++.....             +..+                  ..
T Consensus       126 ~L~~L~Ls~N~l~~------~~p~~~~~l~~L~~L~L~~N~l~-------------~~~p------------------~~  168 (313)
T 1ogq_A          126 TLVTLDFSYNALSG------TLPPSISSLPNLVGITFDGNRIS-------------GAIP------------------DS  168 (313)
T ss_dssp             TCCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCE-------------EECC------------------GG
T ss_pred             CCCEEeCCCCccCC------cCChHHhcCCCCCeEECcCCccc-------------CcCC------------------HH
Confidence            99999999999843      34567889999999998743211             0011                  00


Q ss_pred             cccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363         178 FQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF  257 (421)
Q Consensus       178 ~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~  257 (421)
                      +.    .....+.  ..+++.+++.|.+|...+...                                            
T Consensus       169 l~----~l~~~L~--~L~L~~N~l~~~~~~~~~~l~--------------------------------------------  198 (313)
T 1ogq_A          169 YG----SFSKLFT--SMTISRNRLTGKIPPTFANLN--------------------------------------------  198 (313)
T ss_dssp             GG----CCCTTCC--EEECCSSEEEEECCGGGGGCC--------------------------------------------
T ss_pred             Hh----hhhhcCc--EEECcCCeeeccCChHHhCCc--------------------------------------------
Confidence            00    0000000  001222222222222111000                                            


Q ss_pred             HHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEEEeeCcccc
Q psy9363         258 MEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYI  337 (421)
Q Consensus       258 ~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~  337 (421)
                                            ...+.++.+.++                    +.+|..+..+  ++|+.|+|++|.++
T Consensus       199 ----------------------L~~L~Ls~N~l~--------------------~~~~~~~~~l--~~L~~L~L~~N~l~  234 (313)
T 1ogq_A          199 ----------------------LAFVDLSRNMLE--------------------GDASVLFGSD--KNTQKIHLAKNSLA  234 (313)
T ss_dssp             ----------------------CSEEECCSSEEE--------------------ECCGGGCCTT--SCCSEEECCSSEEC
T ss_pred             ----------------------ccEEECcCCccc--------------------CcCCHHHhcC--CCCCEEECCCCcee
Confidence                                  111111111111                    4466778889  99999999999998


Q ss_pred             hhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccccccccc-CcccCCC
Q psy9363         338 WADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-LRNIKLN  414 (421)
Q Consensus       338 ~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~-l~~i~~p  414 (421)
                       ..++. +..+++ ++|+|++|+|+ .+|..+..+++|+.|+|++|+++. . +...+.+++|+.|++++|+ +.+.++|
T Consensus       235 -~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~-~-ip~~~~l~~L~~l~l~~N~~lc~~p~~  310 (313)
T 1ogq_A          235 -FDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG-E-IPQGGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             -CBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE-E-CCCSTTGGGSCGGGTCSSSEEESTTSS
T ss_pred             -eecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc-c-CCCCccccccChHHhcCCCCccCCCCC
Confidence             22223 567788 99999999999 677667889999999999999953 2 3344889999999999998 7776665


Q ss_pred             C
Q psy9363         415 K  415 (421)
Q Consensus       415 ~  415 (421)
                      .
T Consensus       311 ~  311 (313)
T 1ogq_A          311 A  311 (313)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=7.6e-21  Score=198.21  Aligned_cols=107  Identities=16%  Similarity=0.117  Sum_probs=76.0

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L  376 (421)
                      +|+.+++++    +..|..+..+  ++|+.|+|++|.++...++..+..+++ ++|+|++|+++++++. +..+++|+.|
T Consensus       425 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  502 (606)
T 3vq2_A          425 KLLYLDISYTNTKIDFDGIFLGL--TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLL  502 (606)
T ss_dssp             TCCEEECTTSCCEECCTTTTTTC--TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCEEECcCCCCCccchhhhcCC--CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEE
Confidence            666666665    4455667777  788888888888761113345566777 8888888888866543 4778888888


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      +|++|+++... +..++.+++|++|++++|+|+.++
T Consensus       503 ~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~p  537 (606)
T 3vq2_A          503 NMSHNNLLFLD-SSHYNQLYSLSTLDCSFNRIETSK  537 (606)
T ss_dssp             ECCSSCCSCEE-GGGTTTCTTCCEEECTTSCCCCEE
T ss_pred             ECCCCcCCCcC-HHHccCCCcCCEEECCCCcCcccC
Confidence            88888886643 567778888888888888887654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.81  E-value=8.3e-21  Score=197.91  Aligned_cols=134  Identities=16%  Similarity=0.127  Sum_probs=84.1

Q ss_pred             ceeeeeecCceeEeec--ccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-c
Q psy9363         279 EEVKASINAPFLELVG--FDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-T  351 (421)
Q Consensus       279 ~~~~~~~~~~~~e~~g--~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~  351 (421)
                      ....+.++...+....  ...+....+|+.+.+++    +..+..+..+  ++|+.|++++|.+........+..+++ +
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  428 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC--PQLELLDLAFTRLKVKDAQSPFQNLHLLK  428 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC--TTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC--ccCCeEECCCCcCCCcccchhhhCcccCC
Confidence            3444555554444333  12222222666666664    3345567777  788888888888761111123556777 8


Q ss_pred             EEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCC--cccccCccccccccccccccCcccCCC
Q psy9363         352 CLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWG--EVNALGSLPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       352 ~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~l~~L~~L~Ls~N~l~~i~~p  414 (421)
                      +|++++|.++.+++. +..+++|+.|++++|.+....  .+..+..+++|+.|++++|+++++...
T Consensus       429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  494 (606)
T 3t6q_A          429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH  494 (606)
T ss_dssp             EEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred             EEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence            888888888765433 477888888888888885522  224577788888888888888876543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=2.1e-19  Score=183.94  Aligned_cols=103  Identities=17%  Similarity=0.106  Sum_probs=61.9

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ++|++|||++|.|+..  .+..+..+++|++|+| +|++. ...|..++.+++|++|+|++|.+. .++..     .+++
T Consensus        21 ~~L~~L~Ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-----~l~~   91 (520)
T 2z7x_B           21 QKTTILNISQNYISEL--WTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLV-KISCH-----PTVN   91 (520)
T ss_dssp             TTCSEEECCSSCCCCC--CHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCC-EEECC-----CCCC
T ss_pred             ccccEEECCCCccccc--ChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCcee-ecCcc-----ccCC
Confidence            5777777777777632  3455667777777777 46666 233455566677777777666553 22221     4677


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      |++|++++|.+....     .+..++.+++|++|+++.
T Consensus        92 L~~L~L~~N~l~~~~-----~p~~~~~l~~L~~L~L~~  124 (520)
T 2z7x_B           92 LKHLDLSFNAFDALP-----ICKEFGNMSQLKFLGLST  124 (520)
T ss_dssp             CSEEECCSSCCSSCC-----CCGGGGGCTTCCEEEEEE
T ss_pred             ccEEeccCCcccccc-----chhhhccCCcceEEEecC
Confidence            777777777664321     123566666666666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.80  E-value=2.5e-20  Score=200.77  Aligned_cols=354  Identities=11%  Similarity=0.045  Sum_probs=213.0

Q ss_pred             ChhHHhhhCCCCcEEECCCCCCCCh---------------hhHHHHHh--cCCCCceeec-ccccCCCCCCccccccccc
Q psy9363          11 THDEIEQAVPFIEDLDLSRNLLASW---------------FAVGEITC--QLKHLRHLNL-RIRLKSSSAPAHSYLAEVV   72 (421)
Q Consensus        11 ~~~~~~~~~~~L~~L~Ls~N~ls~~---------------~~i~~~~~--~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L   72 (421)
                      .|.++. .+++|++|+|++|.|+..               +.+|..++  +|++|+.|+| +|++. +.+|..++.+++|
T Consensus       440 IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~-~~iP~~l~~L~~L  517 (876)
T 4ecn_A          440 ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM-TQLPDFLYDLPEL  517 (876)
T ss_dssp             ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTC-CSCCGGGGGCSSC
T ss_pred             hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCC-ccChHHHhCCCCC
Confidence            566666 589999999999999941               03788777  9999999999 58888 6889889999999


Q ss_pred             chhcccccc-CCc-chh-hHHHH---HhhCCCCceeeecCCCCCCccccchhHHH--HHHhccCceeccCCccChhhhhc
Q psy9363          73 FFVHLGRTL-CDE-DFV-KEGSL---LHYLPKLSSLRFTKNPILAEERVVSSREK--TIARLGGLKLLNGSAIERQERQG  144 (421)
Q Consensus        73 ~~L~L~~~~-~~~-~~~-~~~~l---l~~l~~L~~L~l~~N~l~~~~~~~~~~~~--~i~~l~~L~~ln~s~i~~~~r~~  144 (421)
                      ++|+|++|. +++ .++ .+..+   +..+++|++|+|++|.+..       .+.  .++.+++|+.|+++....... .
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-------ip~~~~l~~L~~L~~L~Ls~N~l~~l-p  589 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-------FPASASLQKMVKLGLLDCVHNKVRHL-E  589 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-------CCCHHHHTTCTTCCEEECTTSCCCBC-C
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-------cCChhhhhcCCCCCEEECCCCCcccc-h
Confidence            999998885 766 433 34331   3467799999999999852       234  788999999999985432211 0


Q ss_pred             cHHHHHHhhccccchhhHHHHHHHhCCCCCCcccccccCCCCceEEe-ec-CceeEEEEecccCCCCCcEE--EEEecCC
Q psy9363         145 SEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCD-SE-GHRGTIRYVGSVEGTQGVWY--GIDWDSE  220 (421)
Q Consensus       145 ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~i~~rv~~-l~-~~~~~~r~~G~ip~~~g~~~--gle~d~~  220 (421)
                       .+..+..+..               -....|.+......+. .... +. .+++.+++. .+|...+...  .++..++
T Consensus       590 -~~~~L~~L~~---------------L~Ls~N~l~~lp~~l~-~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          590 -AFGTNVKLTD---------------LKLDYNQIEEIPEDFC-AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             -CCCTTSEESE---------------EECCSSCCSCCCTTSC-EECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEEC
T ss_pred             -hhcCCCcceE---------------EECcCCccccchHHHh-hccccCCEEECcCCCCC-cCchhhhccccCCCCEEEC
Confidence             0000111100               0122344431111111 1111 11 134444433 5665443321  2555566


Q ss_pred             CCCCCCCeeCCEE-eEecCCCCceeEEecCccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchh
Q psy9363         221 TRGKHDGSHNGVK-YFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVH  299 (421)
Q Consensus       221 ~~g~~~G~~~g~~-~f~~~~~~~gsf~~~~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~  299 (421)
                      ..++..|.+.... .+.......-....+...... .++..+...            ...+..+.++.+.+..+....+.
T Consensus       652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~------------l~~L~~L~Ls~N~L~~ip~~~~~  718 (876)
T 4ecn_A          652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFAT------------GSPISTIILSNNLMTSIPENSLK  718 (876)
T ss_dssp             CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHT------------TCCCSEEECCSCCCSCCCTTSSS
T ss_pred             cCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHcc------------CCCCCEEECCCCcCCccChHHhc
Confidence            6555544332110 000000000111122221111 333332211            12233445555444432222111


Q ss_pred             h-------hhCCCccCCCC---CCCchhhh--cCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccC------CcC
Q psy9363         300 E-------EQNTNKLPIPN---DTSGVMEQ--IFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPS------NRI  360 (421)
Q Consensus       300 ~-------~~~L~~l~l~~---~~~~~~~~--~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~------N~l  360 (421)
                      .       ..+|+.|.|++   ..+|..+.  .+  ++|+.|+|++|.|+ + ++..+..+++ +.|+|++      |++
T Consensus       719 ~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l--~~L~~L~Ls~N~L~-~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l  794 (876)
T 4ecn_A          719 PKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTL--PYLSNMDVSYNCFS-S-FPTQPLNSSQLKAFGIRHQRDAEGNRI  794 (876)
T ss_dssp             CTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTC--TTCCEEECCSSCCS-S-CCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred             cccccccccCCccEEECCCCCCccchHHhhhccC--CCcCEEEeCCCCCC-c-cchhhhcCCCCCEEECCCCCCcccccc
Confidence            1       11567777765   55677776  88  99999999999998 2 4455678899 9999977      666


Q ss_pred             c-ccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         361 T-TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       361 ~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      . .+|..+..+++|+.|+|++|+|..++  ..+.  ++|+.|+|++|++..+.+
T Consensus       795 ~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip--~~l~--~~L~~LdLs~N~l~~i~~  844 (876)
T 4ecn_A          795 LRQWPTGITTCPSLIQLQIGSNDIRKVD--EKLT--PQLYILDIADNPNISIDV  844 (876)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCCCBCC--SCCC--SSSCEEECCSCTTCEEEC
T ss_pred             cccChHHHhcCCCCCEEECCCCCCCccC--Hhhc--CCCCEEECCCCCCCccCh
Confidence            5 57767788999999999999996654  3343  799999999999988764

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=3e-20  Score=192.03  Aligned_cols=109  Identities=21%  Similarity=0.069  Sum_probs=56.5

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL   96 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l   96 (421)
                      .|++|++|||++|.|+..  .+..++++++|++|+| +|++.. ..|..++.+++|++|+|++|.+..-....   ++.+
T Consensus        50 ~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~~~~---~~~l  123 (570)
T 2z63_A           50 SFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFP---IGHL  123 (570)
T ss_dssp             TCSSCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTSCCCCSTTCS---CTTC
T ss_pred             CCCCceEEECCCCcCCcc--CcccccCchhCCEEeCcCCcCCc-cCHhhhcCccccccccccccccccCCCcc---cccc
Confidence            345555555555555522  1233445555555555 355542 22333445555555555544432221111   4456


Q ss_pred             CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      ++|++|++++|.+....     .+..++++++|++|+++..
T Consensus       124 ~~L~~L~L~~n~l~~~~-----lp~~~~~l~~L~~L~l~~n  159 (570)
T 2z63_A          124 KTLKELNVAHNLIQSFK-----LPEYFSNLTNLEHLDLSSN  159 (570)
T ss_dssp             TTCCEEECCSSCCCCCC-----CCGGGGGCTTCCEEECTTS
T ss_pred             ccccEEecCCCccceec-----ChhhhcccCCCCEEeCcCC
Confidence            77777777777664311     2345777788888877643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.80  E-value=2.1e-19  Score=177.35  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=49.8

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L  376 (421)
                      +|+.+++++    +..|..+..+  ++|+.|+|++|.++ ++   .....+++ ++|+|++|+++.+|..+..+++|+.|
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L  323 (390)
T 3o6n_A          249 GLVEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  323 (390)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTC--SSCCEEECCSSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             CccEEECCCCcCCCcChhHcccc--ccCCEEECCCCcCcccC---cccCCCCCCCEEECCCCcceecCccccccCcCCEE
Confidence            444444443    2224445555  55555555555555 21   12234455 55555555555555444445555555


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      +|++|.|+.++    +..+++|+.|++++|+++
T Consensus       324 ~L~~N~i~~~~----~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          324 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             ECCSSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred             ECCCCccceeC----chhhccCCEEEcCCCCcc
Confidence            55555554432    344555555555555553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.5e-19  Score=188.38  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=53.3

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L  376 (421)
                      +|+.+++++    +.+|..+..+  ++|+.|+|++|.++ ++   .....+|+ +.|+|++|.++.+|..+..+++|+.|
T Consensus       255 ~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L  329 (597)
T 3oja_B          255 GLVEVDLSYNELEKIMYHPFVKM--QRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENL  329 (597)
T ss_dssp             TCSEEECCSSCCCEEESGGGTTC--SSCCEEECTTSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEE
T ss_pred             CCCEEECCCCccCCCCHHHhcCc--cCCCEEECCCCCCCCCC---cccccCCCCcEEECCCCCCCccCcccccCCCCCEE
Confidence            445555544    2234455555  66666666666665 21   22334555 66666666666555444555666666


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      +|++|.|...+    ++.+++|+.|++++|++.
T Consensus       330 ~L~~N~l~~~~----~~~~~~L~~L~l~~N~~~  358 (597)
T 3oja_B          330 YLDHNSIVTLK----LSTHHTLKNLTLSHNDWD  358 (597)
T ss_dssp             ECCSSCCCCCC----CCTTCCCSEEECCSSCEE
T ss_pred             ECCCCCCCCcC----hhhcCCCCEEEeeCCCCC
Confidence            66666664432    445556666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=2.1e-19  Score=184.98  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=34.5

Q ss_pred             hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCC
Q psy9363         318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIV  384 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~  384 (421)
                      +..+  ++|+.|+|++|.++ .+.....+..+++ ++|+|++|+|+.+|..+..+++|+.|++++|.++
T Consensus       357 ~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~  423 (549)
T 2z81_A          357 KGAW--PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR  423 (549)
T ss_dssp             TTSS--TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS
T ss_pred             hhcc--ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcc
Confidence            3455  56666666666665 2222233455555 6666666666655554444455555555555543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.79  E-value=1e-19  Score=188.33  Aligned_cols=126  Identities=15%  Similarity=0.100  Sum_probs=92.3

Q ss_pred             cceeeeeecCceeEeecc--cchhhhhCCCccCCCC----CCCc-hhhhcCCCCCccEEEeeCcccchhhHHHHhccC-C
Q psy9363         278 VEEVKASINAPFLELVGF--DQVHEEQNTNKLPIPN----DTSG-VMEQIFPQGHIHTLTLGNMGYIWADILKLLANF-P  349 (421)
Q Consensus       278 ~~~~~~~~~~~~~e~~g~--~~l~~~~~L~~l~l~~----~~~~-~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l-~  349 (421)
                      .....+.++.+.+..++-  ..+....+|+.+++++    +.+| ..+..+  ++|+.|+|++|.++ +.   ....+ +
T Consensus       377 ~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~---~~~~l~~  450 (562)
T 3a79_B          377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA--ESILVLNLSSNMLT-GS---VFRCLPP  450 (562)
T ss_dssp             SSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC--TTCCEEECCSSCCC-GG---GGSSCCT
T ss_pred             CCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc--ccCCEEECCCCCCC-cc---hhhhhcC
Confidence            445566666665543221  1122222777777776    3244 357788  99999999999997 32   23445 4


Q ss_pred             C-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         350 V-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       350 ~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      + +.|+|++|+|+.+|..+..+++|+.|+|++|+|+.++ ...+..+++|+.|++++|++..
T Consensus       451 ~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~l~~N~~~c  511 (562)
T 3a79_B          451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC  511 (562)
T ss_dssp             TCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCC-TTSTTTCTTCCCEECCSCCBCC
T ss_pred             cCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCC-HHHHhcCCCCCEEEecCCCcCC
Confidence            6 9999999999999987889999999999999998765 3348899999999999999863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.78  E-value=4.1e-20  Score=192.64  Aligned_cols=107  Identities=20%  Similarity=0.234  Sum_probs=67.8

Q ss_pred             CCCccCCCC---CCC---chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC-C-CCCCCCC
Q psy9363         303 NTNKLPIPN---DTS---GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-V-PGMFSSL  373 (421)
Q Consensus       303 ~L~~l~l~~---~~~---~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~-~~~l~~L  373 (421)
                      +|+.+++++   ...   +..+..+  ++|+.|++++|.+. ...+..+..+++ ++|++++|+++.+.+ . +..+++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  427 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNL--SHLQSLNLSYNEPL-SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL  427 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTC--TTCCEEECCSCSCE-EECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred             cCCEEECCCCccccccCcchhcccC--CCCCEEECCCCcCC-cCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence            555555554   111   3445666  77777777777766 112244556667 777777777775432 2 4667778


Q ss_pred             cEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         374 EELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       374 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      +.|++++|.+.... +..++.+++|++|++++|++++..+
T Consensus       428 ~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~  466 (606)
T 3t6q_A          428 KVLNLSHSLLDISS-EQLFDGLPALQHLNLQGNHFPKGNI  466 (606)
T ss_dssp             CEEECTTCCCBTTC-TTTTTTCTTCCEEECTTCBCGGGEE
T ss_pred             CEEECCCCccCCcC-HHHHhCCCCCCEEECCCCCCCcccc
Confidence            88888888775443 5567778888888888888776433

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=1.3e-19  Score=183.58  Aligned_cols=293  Identities=14%  Similarity=0.033  Sum_probs=174.6

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      +++++|||++|.|+..  .+..+.++++|++|+| +|.+. ...|..++.+++|++|+|++|.+..-+...   +..+++
T Consensus        32 ~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~  105 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL--NQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGV---FTGLSN  105 (477)
T ss_dssp             TTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCSCCTTS---STTCTT
T ss_pred             CCCcEEECCCCccceE--CHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCCCcCCccCccc---ccCCCC
Confidence            5899999999999854  2456788999999999 58888 345666778899999999888775444433   567999


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF  178 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~  178 (421)
                      |++|+|++|.+...      .+..++.+++|+.|+++.......             .+                  ..+
T Consensus       106 L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~l~~n~l~~~-------------~~------------------~~~  148 (477)
T 2id5_A          106 LTKLDISENKIVIL------LDYMFQDLYNLKSLEVGDNDLVYI-------------SH------------------RAF  148 (477)
T ss_dssp             CCEEECTTSCCCEE------CTTTTTTCTTCCEEEECCTTCCEE-------------CT------------------TSS
T ss_pred             CCEEECCCCccccC------ChhHccccccCCEEECCCCcccee-------------Ch------------------hhc
Confidence            99999999998433      345678899999998864321100             00                  000


Q ss_pred             ccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363         179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM  258 (421)
Q Consensus       179 ~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~  258 (421)
                      ...  .-...+     +++.+++.+..+...+....++..++..+...                       .+...    
T Consensus       149 ~~l--~~L~~L-----~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~-----------------------~~~~~----  194 (477)
T 2id5_A          149 SGL--NSLEQL-----TLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----------------------AIRDY----  194 (477)
T ss_dssp             TTC--TTCCEE-----EEESCCCSSCCHHHHTTCTTCCEEEEESCCCC-----------------------EECTT----
T ss_pred             cCC--CCCCEE-----ECCCCcCcccChhHhcccCCCcEEeCCCCcCc-----------------------EeChh----
Confidence            000  000001     11111111111100000000000000000000                       00000    


Q ss_pred             HHhhhhhccccchhhhccccceeeeeecCce-eEeecccchhhhhCCCccCCCC---CCCc-hhhhcCCCCCccEEEeeC
Q psy9363         259 EALHRKYVETDNELTVRENVEEVKASINAPF-LELVGFDQVHEEQNTNKLPIPN---DTSG-VMEQIFPQGHIHTLTLGN  333 (421)
Q Consensus       259 ~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~-~e~~g~~~l~~~~~L~~l~l~~---~~~~-~~~~~l~~~~L~~L~Ls~  333 (421)
                                    .+........+.++... ...+... +....+|+.+.+++   ..+| ..+..+  ++|+.|+|++
T Consensus       195 --------------~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~  257 (477)
T 2id5_A          195 --------------SFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHL--VYLRFLNLSY  257 (477)
T ss_dssp             --------------CSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTC--TTCCEEECCS
T ss_pred             --------------hcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCcccccCHHHhcCc--cccCeeECCC
Confidence                          00011112222332211 1111111 11111566666654   3333 567888  9999999999


Q ss_pred             cccc-hhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         334 MGYI-WADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       334 N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      |.++ .+  +..+..+++ +.|+|++|+++.+++ .+..+++|+.|+|++|+|+.++ ...+..+++|+.|+|++|++.
T Consensus       258 n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          258 NPISTIE--GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE-ESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             SCCCEEC--TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC-GGGBSCGGGCCEEECCSSCEE
T ss_pred             CcCCccC--hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC-HhHcCCCcccCEEEccCCCcc
Confidence            9998 32  245677888 999999999997754 4588999999999999998765 567888999999999999986

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.78  E-value=4.4e-20  Score=187.03  Aligned_cols=276  Identities=15%  Similarity=0.067  Sum_probs=164.1

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH   94 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~   94 (421)
                      ...+++|++|+|++|.|+..  .+..++++++|++|+| +|++.. ..+..++.+++|++|+|++|.+....+..   +.
T Consensus        52 ~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~---~~  125 (477)
T 2id5_A           52 FASFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKL-IPLGVFTGLSNLTKLDISENKIVILLDYM---FQ  125 (477)
T ss_dssp             TTTCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCS-CCTTSSTTCTTCCEEECTTSCCCEECTTT---TT
T ss_pred             ccCCCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCc-cCcccccCCCCCCEEECCCCccccCChhH---cc
Confidence            34689999999999999843  3567889999999999 588883 33334567899999999888775544433   67


Q ss_pred             hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363          95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG  174 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (421)
                      .+++|++|++++|.+...      .+..++.+++|+.|+++...-......   .+....                 .  
T Consensus       126 ~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~-----------------~--  177 (477)
T 2id5_A          126 DLYNLKSLEVGDNDLVYI------SHRAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLH-----------------G--  177 (477)
T ss_dssp             TCTTCCEEEECCTTCCEE------CTTSSTTCTTCCEEEEESCCCSSCCHH---HHTTCT-----------------T--
T ss_pred             ccccCCEEECCCCcccee------ChhhccCCCCCCEEECCCCcCcccChh---HhcccC-----------------C--
Confidence            899999999999998433      345678899999998875322111000   000000                 0  


Q ss_pred             CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                                 ...+.     +..+++.+..+........++..++..+...+.+         ++...           
T Consensus       178 -----------L~~L~-----l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~---------~~~~~-----------  221 (477)
T 2id5_A          178 -----------LIVLR-----LRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM---------TPNCL-----------  221 (477)
T ss_dssp             -----------CCEEE-----EESCCCCEECTTCSCSCTTCCEEEEECCTTCCEE---------CTTTT-----------
T ss_pred             -----------CcEEe-----CCCCcCcEeChhhcccCcccceeeCCCCcccccc---------Ccccc-----------
Confidence                       00011     1111111111111111111111111101111111         00000           


Q ss_pred             chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEE
Q psy9363         255 SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLT  330 (421)
Q Consensus       255 ~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~  330 (421)
                                           .......+.++...+..+....+....+|+.+++++    +..+..+..+  ++|+.|+
T Consensus       222 ---------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~  278 (477)
T 2id5_A          222 ---------------------YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL--LRLQEIQ  278 (477)
T ss_dssp             ---------------------TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTC--TTCCEEE
T ss_pred             ---------------------cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcccc--ccCCEEE
Confidence                                 000122233333333333222222223666666665    3334567888  9999999


Q ss_pred             eeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCC
Q psy9363         331 LGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVD  385 (421)
Q Consensus       331 Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~  385 (421)
                      |++|.++ ...+..+..+++ +.|+|++|+|+.++... ..+++|+.|+|++|.+..
T Consensus       279 L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          279 LVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CCSSCCS-EECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCCCccc-eECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            9999998 222355678889 99999999999988654 788999999999999853

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.78  E-value=6e-20  Score=191.43  Aligned_cols=106  Identities=16%  Similarity=0.183  Sum_probs=79.5

Q ss_pred             CCCccCCCC----CCCc-hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc--cCCCCCCCCCCc
Q psy9363         303 NTNKLPIPN----DTSG-VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT--LDSVPGMFSSLE  374 (421)
Q Consensus       303 ~L~~l~l~~----~~~~-~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~--l~~~~~~l~~L~  374 (421)
                      +|+.+.+++    +..+ ..+..+  ++|+.|++++|.+. ..++..+..+++ ++|++++|.+++  +|..+..+++|+
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSL--EKLLYLDISYTNTK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTC--TTCCEEECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCeeECCCCccCCccChhhhhcc--ccCCEEECcCCCCC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            566666665    3333 466777  88888888888887 223355667788 888888888885  566668888999


Q ss_pred             EEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         375 ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       375 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      .|+|++|+++... +..++.+++|++|+|++|+++++.
T Consensus       477 ~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~  513 (606)
T 3vq2_A          477 FLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLD  513 (606)
T ss_dssp             EEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCEE
T ss_pred             EEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCcC
Confidence            9999999886644 567888899999999999988753

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.77  E-value=3e-19  Score=188.76  Aligned_cols=107  Identities=20%  Similarity=0.218  Sum_probs=85.3

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc--hhh-HH----HHhccCCC-cEEEccCCcCcccCCC-CCC
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI--WAD-IL----KLLANFPV-TCLKLPSNRITTLDSV-PGM  369 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~--~~~-i~----~~~~~l~~-~~L~L~~N~l~~l~~~-~~~  369 (421)
                      +|+.+++++    +..+..+..+  ++|++|+|++|.++  |.. ++    ..+..++. ++|+|++|+|+.+|.. +..
T Consensus       481 ~L~~L~Ls~N~l~~i~~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~  558 (680)
T 1ziw_A          481 NLTILDLSNNNIANINDDMLEGL--EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD  558 (680)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             CCCEEECCCCCCCcCChhhhccc--cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence            677777765    4445668888  99999999999998  211 00    12566788 9999999999999875 488


Q ss_pred             CCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         370 FSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       370 l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      +++|+.|+|++|+|+.++ +..+..+++|+.|+|++|+|+.++
T Consensus       559 l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~~L~L~~N~l~~~~  600 (680)
T 1ziw_A          559 LFELKIIDLGLNNLNTLP-ASVFNNQVSLKSLNLQKNLITSVE  600 (680)
T ss_dssp             CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCCCBCC
T ss_pred             ccCcceeECCCCCCCcCC-HhHhCCCCCCCEEECCCCcCCccC
Confidence            999999999999998765 556788999999999999999865

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.77  E-value=1.3e-19  Score=196.36  Aligned_cols=87  Identities=15%  Similarity=0.163  Sum_probs=42.6

Q ss_pred             chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363         315 GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       315 ~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      +..+..+  ++|++|+|++|.++ ...+..+..+++ +.|+|++|.|+.+++. +..+++|+.|+|++|.++.++     
T Consensus       307 ~~~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-----  378 (844)
T 3j0a_A          307 DEAFYGL--DNLQVLNLSYNLLG-ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH-----  378 (844)
T ss_dssp             TTTTTTC--SSCCEEEEESCCCS-CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS-----
T ss_pred             hHHhcCC--CCCCEEECCCCCCC-ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc-----
Confidence            3445555  55555555555554 111123444555 5555555555554432 244555555555555554322     


Q ss_pred             CccccccccccccccCcc
Q psy9363         393 GSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~  410 (421)
                       .+++|+.|++++|+++.
T Consensus       379 -~~~~L~~L~l~~N~l~~  395 (844)
T 3j0a_A          379 -FIPSIPDIFLSGNKLVT  395 (844)
T ss_dssp             -SCCSCSEEEEESCCCCC
T ss_pred             -CCCCcchhccCCCCccc
Confidence             14444555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.77  E-value=1.8e-18  Score=180.33  Aligned_cols=98  Identities=15%  Similarity=0.178  Sum_probs=61.7

Q ss_pred             CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      ..+..+..+  +.|+.|+|++|.+....++..+..+++ ++|+|++|+|+++++. +..+++|++|+|++|+|+.++ +.
T Consensus       460 ~~~~~~~~~--~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~  536 (635)
T 4g8a_A          460 AFNGIFNGL--SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-TF  536 (635)
T ss_dssp             CCTTTTTTC--TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCC-CG
T ss_pred             ccccccccc--hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCC-hh
Confidence            334555666  677777777776431112234555666 7777777777765443 366777777777777776654 45


Q ss_pred             ccCccccccccccccccCcccCC
Q psy9363         391 ALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      .++.+++|+.|+|++|+|+.++.
T Consensus       537 ~~~~l~~L~~L~Ls~N~l~~~~~  559 (635)
T 4g8a_A          537 PYKCLNSLQVLDYSLNHIMTSKK  559 (635)
T ss_dssp             GGTTCTTCCEEECTTSCCCBCCS
T ss_pred             HHhCCCCCCEEECCCCcCCCCCH
Confidence            66677777777777777776543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.76  E-value=1.5e-18  Score=177.47  Aligned_cols=360  Identities=13%  Similarity=0.081  Sum_probs=189.7

Q ss_pred             hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCc-chhhH
Q psy9363          12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDE-DFVKE   89 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~-~~~~~   89 (421)
                      |..+. .+++|++|+|++|.|++  ..+..++++++|++|+| +|+++  .+|..  .+++|++|+|++|.+.+ ..+..
T Consensus        38 ~~~~~-~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~l~~L~~L~L~~N~l~~~~~p~~  110 (520)
T 2z7x_B           38 TSDIL-SLSKLRILIISHNRIQY--LDISVFKFNQELEYLDLSHNKLV--KISCH--PTVNLKHLDLSFNAFDALPICKE  110 (520)
T ss_dssp             HHHHT-TCTTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECCSSCCC--EEECC--CCCCCSEEECCSSCCSSCCCCGG
T ss_pred             hhhcc-ccccccEEecCCCccCC--cChHHhhcccCCCEEecCCCcee--ecCcc--ccCCccEEeccCCccccccchhh
Confidence            44444 68999999999999984  34667889999999999 58888  35554  78899999998887754 33333


Q ss_pred             HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCc--eeccCCccCh--hhhhccHHHHHHh------------h
Q psy9363          90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGL--KLLNGSAIER--QERQGSEYDYIKE------------F  153 (421)
Q Consensus        90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L--~~ln~s~i~~--~~r~~ae~~~l~~------------~  153 (421)
                         ++.+++|++|++++|.+..         ..++.+++|  +.|+++....  .....+.+..+..            .
T Consensus       111 ---~~~l~~L~~L~L~~n~l~~---------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~  178 (520)
T 2z7x_B          111 ---FGNMSQLKFLGLSTTHLEK---------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF  178 (520)
T ss_dssp             ---GGGCTTCCEEEEEESSCCG---------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred             ---hccCCcceEEEecCcccch---------hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence               6779999999999999843         235556666  7666653221  0000000000000            0


Q ss_pred             ccccc---------------hh------h-HHHHH--HHhCCCC-----CCcccccccC-----C-CCceEEeecCceeE
Q psy9363         154 GAVWL---------------DE------K-RRAEF--LEANPRV-----GDNYFQVMED-----D-IGLRVCDSEGHRGT  198 (421)
Q Consensus       154 ~~~~~---------------~~------~-~~~~~--~~~~~~~-----~~n~~~~~~~-----~-i~~rv~~l~~~~~~  198 (421)
                      +..+.               .+      . ....+  ....+..     ..+.+.+..+     . ....+.  ..+++.
T Consensus       179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~--~L~l~~  256 (520)
T 2z7x_B          179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW--YFSISN  256 (520)
T ss_dssp             CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCS--EEEEEE
T ss_pred             hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCccc--EEEeec
Confidence            00000               00      0 00000  0000000     0010000000     0 000111  236778


Q ss_pred             EEEecccCCCC-----CcEEEEEecCCCCCCCCCeeCC-----------EEeE---ecCCCC-c--eeEEecCcccc-Cc
Q psy9363         199 IRYVGSVEGTQ-----GVWYGIDWDSETRGKHDGSHNG-----------VKYF---WTHSTT-S--GSFMRRDKLNF-GS  255 (421)
Q Consensus       199 ~r~~G~ip~~~-----g~~~gle~d~~~~g~~~G~~~g-----------~~~f---~~~~~~-~--gsf~~~~~l~~-g~  255 (421)
                      +++.|.+|...     +....++..+...+..  .+..           .+.+   .+.-.. .  +.+..++.+.. +.
T Consensus       257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n  334 (520)
T 2z7x_B          257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNN  334 (520)
T ss_dssp             EEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSS
T ss_pred             ccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECC
Confidence            88899888775     5544555544332221  1110           0000   000000 0  11111222211 11


Q ss_pred             hhHHHhhhhhccccchhhhccccceeeeeecCceeEeecc--cchhhhhCCCccCCCC----CCCch-hhhcCCCCCccE
Q psy9363         256 SFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGF--DQVHEEQNTNKLPIPN----DTSGV-MEQIFPQGHIHT  328 (421)
Q Consensus       256 ~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~--~~l~~~~~L~~l~l~~----~~~~~-~~~~l~~~~L~~  328 (421)
                      .+.+.+.         ..+........+.++.+.+..++.  ..+....+|+.+++++    +.+|. .+..+  ++|+.
T Consensus       335 ~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l--~~L~~  403 (520)
T 2z7x_B          335 LLTDTVF---------ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWT--KSLLS  403 (520)
T ss_dssp             CCCTTTT---------TTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCC--TTCCE
T ss_pred             ccChhhh---------hhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccC--ccCCE
Confidence            1111000         011223344555555554443211  1122222677777765    32443 36677  88888


Q ss_pred             EEeeCcccchhhHHHHhccC-CC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccc
Q psy9363         329 LTLGNMGYIWADILKLLANF-PV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAST  406 (421)
Q Consensus       329 L~Ls~N~l~~~~i~~~~~~l-~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N  406 (421)
                      |+|++|.++ +.+   ...+ ++ +.|+|++|+|+.+|..+..+++|+.|+|++|+|+.++ ...+..+++|++|++++|
T Consensus       404 L~Ls~N~l~-~~~---~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          404 LNMSSNILT-DTI---FRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVP-DGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             EECCSSCCC-GGG---GGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             EECcCCCCC-cch---hhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccC-HHHhccCCcccEEECcCC
Confidence            888888886 222   2233 45 8888888888888876678888888888888887654 234778888888888888


Q ss_pred             cCcc
Q psy9363         407 NLRN  410 (421)
Q Consensus       407 ~l~~  410 (421)
                      +++.
T Consensus       479 ~~~c  482 (520)
T 2z7x_B          479 PWDC  482 (520)
T ss_dssp             CBCC
T ss_pred             CCcc
Confidence            8764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.76  E-value=5.7e-19  Score=181.76  Aligned_cols=108  Identities=18%  Similarity=0.086  Sum_probs=85.4

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      .++|++|||++|.|+..  .+..++.+++|++|+| +|++. ...|..++.+++|++|+|++|.+.+.++..   ++.++
T Consensus        25 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~   98 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSW---FGPLS   98 (549)
T ss_dssp             CTTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHH---HTTCT
T ss_pred             CCCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHH---hccCC
Confidence            36899999999999843  3556788999999999 59888 345566778899999999988876655543   67899


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      +|++|++++|.+....     .+..++.+++|++|+++..
T Consensus        99 ~L~~L~Ls~n~l~~~~-----~~~~~~~l~~L~~L~L~~n  133 (549)
T 2z81_A           99 SLKYLNLMGNPYQTLG-----VTSLFPNLTNLQTLRIGNV  133 (549)
T ss_dssp             TCCEEECTTCCCSSSC-----SSCSCTTCTTCCEEEEEES
T ss_pred             CCcEEECCCCcccccc-----hhhhhhccCCccEEECCCC
Confidence            9999999999985432     1235788999999988753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.75  E-value=7.3e-19  Score=181.59  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=81.3

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCc-chhhHHHHH
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDE-DFVKEGSLL   93 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~-~~~~~~~ll   93 (421)
                      ...|++|++|+|++|.+++.  .+..++.+++|++|++ +|++.. ..+..++.+++|++|+|++|.+.. .++..   +
T Consensus        72 ~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~---~  145 (570)
T 2z63_A           72 YQSLSHLSTLILTGNPIQSL--ALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEY---F  145 (570)
T ss_dssp             TTTCTTCCEEECTTCCCCEE--CTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCTTCCEEECCSSCCCCCCCCGG---G
T ss_pred             ccCchhCCEEeCcCCcCCcc--CHhhhcCcccccccccccccccc-CCCccccccccccEEecCCCccceecChhh---h
Confidence            44689999999999999843  3456788999999999 588884 223346788999999998886644 33333   6


Q ss_pred             hhCCCCceeeecCCCCCCccccchhHHHHHHhccCc----eeccCCc
Q psy9363          94 HYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGL----KLLNGSA  136 (421)
Q Consensus        94 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L----~~ln~s~  136 (421)
                      ..+++|++|++++|.+...      .+..++.+++|    ..|+.+.
T Consensus       146 ~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          146 SNLTNLEHLDLSSNKIQSI------YCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             GGCTTCCEEECTTSCCCEE------CGGGGHHHHTCTTCCCEEECTT
T ss_pred             cccCCCCEEeCcCCcccee------cHHHccchhccchhhhhcccCC
Confidence            7799999999999998443      23456667676    5666653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.74  E-value=2.4e-19  Score=180.20  Aligned_cols=350  Identities=13%  Similarity=0.016  Sum_probs=196.5

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcch-hhHHHHHhhCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDF-VKEGSLLHYLPK   98 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~-~~~~~ll~~l~~   98 (421)
                      .-+.++.+++.++.++.+      .++|++|+| +|.+. ...|..++.+++|++|+|++|.+.+.+ +..   +..+++
T Consensus        11 ~~~~~~c~~~~l~~lp~l------~~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l~~   80 (455)
T 3v47_A           11 IGYNAICINRGLHQVPEL------PAHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSS   80 (455)
T ss_dssp             ETTEEECCSSCCSSCCCC------CTTCCEEECCSSCCC-EECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTCTT
T ss_pred             EccccCcCCCCcccCCCC------CCccCEEEecCCccC-cCChhHhccCccccEEECcCCcccceECccc---cccccc
Confidence            355799999999876542      378999999 58888 455667789999999999888764442 222   667999


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF  178 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~  178 (421)
                      |++|+|++|.+..      ..+..++.+++|++|+++...-.+.....    ..++...    .++     +-....|.+
T Consensus        81 L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~~~l~----~L~-----~L~L~~n~l  141 (455)
T 3v47_A           81 LIILKLDYNQFLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSG----NFFKPLT----SLE-----MLVLRDNNI  141 (455)
T ss_dssp             CCEEECTTCTTCE------ECTTTTTTCTTCCEEECTTSCCBTHHHHS----STTTTCT----TCC-----EEECCSSBC
T ss_pred             CCEEeCCCCccCc------cChhhccCcccCCEEeCCCCCCCccccCc----ccccCcc----cCC-----EEECCCCcc
Confidence            9999999999843      33567889999999999864332110000    0011000    000     001223444


Q ss_pred             ccccCCC-CceEEee-cCceeEEEEecccCCCCCcE--EEEEecCCCCCCCCCeeCCEE-eEecC---CCCceeEEecCc
Q psy9363         179 QVMEDDI-GLRVCDS-EGHRGTIRYVGSVEGTQGVW--YGIDWDSETRGKHDGSHNGVK-YFWTH---STTSGSFMRRDK  250 (421)
Q Consensus       179 ~~~~~~i-~~rv~~l-~~~~~~~r~~G~ip~~~g~~--~gle~d~~~~g~~~G~~~g~~-~f~~~---~~~~gsf~~~~~  250 (421)
                      .+..... ......+ ..+++.+++.+..+...+..  ..++..++..+...+...... ...+.   ....-....++.
T Consensus       142 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  221 (455)
T 3v47_A          142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSG  221 (455)
T ss_dssp             CSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTT
T ss_pred             CccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCC
Confidence            3221110 0000101 11344445555555443322  233444433222111000000 00000   000011111111


Q ss_pred             cccCchhHHHhhhhhccccchhhhccccceeeeeecCce----------eEeecccchhhh--hCCCccCCCC----CCC
Q psy9363         251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPF----------LELVGFDQVHEE--QNTNKLPIPN----DTS  314 (421)
Q Consensus       251 l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~----------~e~~g~~~l~~~--~~L~~l~l~~----~~~  314 (421)
                      .......++++.....          ......+.++...          +.......+...  .+|+.+++++    +.+
T Consensus       222 n~l~~~~~~~~~~~~~----------~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  291 (455)
T 3v47_A          222 NGFKESMAKRFFDAIA----------GTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALL  291 (455)
T ss_dssp             SCCCHHHHHHHHHHTT----------TCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEEC
T ss_pred             Ccccccchhhhhcccc----------ccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccc
Confidence            1112223332222110          0112222222110          000011111111  1567777765    445


Q ss_pred             chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363         315 GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       315 ~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      |..+..+  ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++++++. +..+++|+.|+|++|+++... +..+
T Consensus       292 ~~~~~~l--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~  367 (455)
T 3v47_A          292 KSVFSHF--TDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG-DQSF  367 (455)
T ss_dssp             TTTTTTC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC-TTTT
T ss_pred             hhhcccC--CCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC-hhhc
Confidence            6778899  99999999999998 222355677889 9999999999987543 488999999999999997654 5688


Q ss_pred             CccccccccccccccCcccCC
Q psy9363         393 GSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      ..+++|++|+|++|+|+.++.
T Consensus       368 ~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          368 LGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             TTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccccEEECCCCccccCCH
Confidence            999999999999999998654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=7.2e-19  Score=185.82  Aligned_cols=112  Identities=18%  Similarity=0.149  Sum_probs=78.2

Q ss_pred             hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363          12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG   90 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~   90 (421)
                      |..+. .|++|++|+|++|.|+..+  +..++.+++|++|+| +|++. ...|..++.+++|++|+|++|.+.+..+.. 
T Consensus        66 ~~~~~-~l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-  140 (680)
T 1ziw_A           66 PELCQ-KLPMLKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGT-  140 (680)
T ss_dssp             TTHHH-HCTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCS-
T ss_pred             HHHHh-cccCcCEEECCCCccCccC--hhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchh-
Confidence            44444 6899999999999998542  235778999999999 58887 344455678889999999877665543332 


Q ss_pred             HHHhhCCCCceeeecCCCCCCccccchhHHHH--HHhccCceeccCCc
Q psy9363          91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKT--IARLGGLKLLNGSA  136 (421)
Q Consensus        91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~--i~~l~~L~~ln~s~  136 (421)
                        +..+++|++|++++|.+....      +..  ...+++|+.|+++.
T Consensus       141 --~~~l~~L~~L~L~~n~l~~~~------~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          141 --QVQLENLQELLLSNNKIQALK------SEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             --SSCCTTCCEEECCSSCCCCBC------HHHHGGGTTCEESEEECTT
T ss_pred             --hcccccCCEEEccCCcccccC------HHHhhccccccccEEECCC
Confidence              556888888888888874432      222  23446777777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.73  E-value=2.8e-18  Score=185.90  Aligned_cols=113  Identities=20%  Similarity=0.201  Sum_probs=79.8

Q ss_pred             hhCCCCcEEECCCCCCCChhhH-HHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363          17 QAVPFIEDLDLSRNLLASWFAV-GEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH   94 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~~i-~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~   94 (421)
                      ..+++|++|||++|.+.  ..+ +..+.++++|++|+| +|.+. ...|..++.+++|++|+|++|.+.+..+.... +.
T Consensus        45 ~~l~~L~~LdLs~n~~~--~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~  120 (844)
T 3j0a_A           45 PFLEQLQLLELGSQYTP--LTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY-FR  120 (844)
T ss_dssp             SSCCSCSEEEECTTCCC--CEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCC-CS
T ss_pred             cccccCeEEeCCCCCCc--cccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCcc-cc
Confidence            35788999999988554  234 556788888999999 58887 34566677888899999987776553222111 55


Q ss_pred             hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      .+++|++|+|++|.+....     .+..++.+++|+.|+++...
T Consensus       121 ~L~~L~~L~Ls~N~l~~~~-----~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          121 NLKALTRLDLSKNQIRSLY-----LHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             SCSSCCEEEEESCCCCCCC-----CCGGGGTCSSCCEEEEESSC
T ss_pred             ccCCCCEEECCCCcccccc-----cchhHhhCCCCCEEECCCCc
Confidence            6888899999988875432     12357888888888877543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.73  E-value=1.1e-17  Score=164.94  Aligned_cols=271  Identities=13%  Similarity=0.067  Sum_probs=177.2

Q ss_pred             ChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363          11 THDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE   89 (421)
Q Consensus        11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~   89 (421)
                      .|.++...+++|++|+|++|.|++.  .+..++.+++|++|+| +|++. ...|..++.+++|++|+|++|.+..-+..+
T Consensus        60 l~~~~~~~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~  136 (390)
T 3o6n_A           60 LPAALLDSFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGI  136 (390)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CChhHhcccccCcEEECCCCccccc--ChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHH
Confidence            5666677899999999999999843  2446788999999999 59888 345556778999999999888775444443


Q ss_pred             HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHh
Q psy9363          90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEA  169 (421)
Q Consensus        90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~  169 (421)
                         +..+++|++|++++|.+...      .+..++.+++|+.|+++........         .+               
T Consensus       137 ---~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~l~~n~l~~~~---------~~---------------  183 (390)
T 3o6n_A          137 ---FHNTPKLTTLSMSNNNLERI------EDDTFQATTSLQNLQLSSNRLTHVD---------LS---------------  183 (390)
T ss_dssp             ---TTTCTTCCEEECCSSCCCBC------CTTTTSSCTTCCEEECCSSCCSBCC---------GG---------------
T ss_pred             ---hcCCCCCcEEECCCCccCcc------ChhhccCCCCCCEEECCCCcCCccc---------cc---------------
Confidence               56799999999999998543      3456788999999998753221100         00               


Q ss_pred             CCCCCCcccccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEec
Q psy9363         170 NPRVGDNYFQVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRR  248 (421)
Q Consensus       170 ~~~~~~n~~~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~  248 (421)
                             .     +.-...+. +.. .+....    .+.      .++..++.                           
T Consensus       184 -------~-----l~~L~~L~-l~~n~l~~~~----~~~------~L~~L~l~---------------------------  213 (390)
T 3o6n_A          184 -------L-----IPSLFHAN-VSYNLLSTLA----IPI------AVEELDAS---------------------------  213 (390)
T ss_dssp             -------G-----CTTCSEEE-CCSSCCSEEE----CCS------SCSEEECC---------------------------
T ss_pred             -------c-----ccccceee-cccccccccC----CCC------cceEEECC---------------------------
Confidence                   0     00000011 100 000000    000      00000000                           


Q ss_pred             CccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCC
Q psy9363         249 DKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGH  325 (421)
Q Consensus       249 ~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~  325 (421)
                                                            ...+..+.....   .+|+.+.+++   .. ...+..+  ++
T Consensus       214 --------------------------------------~n~l~~~~~~~~---~~L~~L~l~~n~l~~-~~~l~~l--~~  249 (390)
T 3o6n_A          214 --------------------------------------HNSINVVRGPVN---VELTILKLQHNNLTD-TAWLLNY--PG  249 (390)
T ss_dssp             --------------------------------------SSCCCEEECCCC---SSCCEEECCSSCCCC-CGGGGGC--TT
T ss_pred             --------------------------------------CCeeeecccccc---ccccEEECCCCCCcc-cHHHcCC--CC
Confidence                                                  000000000000   0344444443   22 2467788  99


Q ss_pred             ccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363         326 IHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA  404 (421)
Q Consensus       326 L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls  404 (421)
                      |++|+|++|.++ ...+..+..+++ ++|+|++|+++.++.....+++|+.|+|++|++..+  +..+..+++|+.|+++
T Consensus       250 L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~  326 (390)
T 3o6n_A          250 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLD  326 (390)
T ss_dssp             CSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECC
T ss_pred             ccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcceec--CccccccCcCCEEECC
Confidence            999999999998 222355677888 999999999998887667889999999999999764  3457788999999999


Q ss_pred             cccCcccCCC
Q psy9363         405 STNLRNIKLN  414 (421)
Q Consensus       405 ~N~l~~i~~p  414 (421)
                      +|+|+.+++.
T Consensus       327 ~N~i~~~~~~  336 (390)
T 3o6n_A          327 HNSIVTLKLS  336 (390)
T ss_dssp             SSCCCCCCCC
T ss_pred             CCccceeCch
Confidence            9999887643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.73  E-value=3.7e-18  Score=177.94  Aligned_cols=273  Identities=13%  Similarity=0.084  Sum_probs=180.2

Q ss_pred             CChhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhh
Q psy9363          10 KTHDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVK   88 (421)
Q Consensus        10 ~~~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~   88 (421)
                      ..|..+...+++|++|+|++|.|+..  .+..++.+++|++|+| +|.+. ...|..++.+++|++|+|++|.+..-+..
T Consensus        65 ~lp~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  141 (597)
T 3oja_B           65 KLPAALLDSFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRG  141 (597)
T ss_dssp             EECTHHHHHCCCCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CcCHHHHccCCCCcEEECCCCCCCCC--ChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEeeCCCCCCCCHH
Confidence            35667777899999999999999943  3456789999999999 59988 45555668899999999998877655554


Q ss_pred             HHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHH
Q psy9363          89 EGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLE  168 (421)
Q Consensus        89 ~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~  168 (421)
                      +   +..+++|++|+|++|.+...      .+..++.+++|++|+++........         .+              
T Consensus       142 ~---~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N~l~~~~---------~~--------------  189 (597)
T 3oja_B          142 I---FHNTPKLTTLSMSNNNLERI------EDDTFQATTSLQNLQLSSNRLTHVD---------LS--------------  189 (597)
T ss_dssp             T---TTTCTTCCEEECCSSCCCBC------CTTTTTTCTTCCEEECTTSCCSBCC---------GG--------------
T ss_pred             H---hccCCCCCEEEeeCCcCCCC------ChhhhhcCCcCcEEECcCCCCCCcC---------hh--------------
Confidence            4   57899999999999998543      3456889999999999753221100         00              


Q ss_pred             hCCCCCCcccccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEe
Q psy9363         169 ANPRVGDNYFQVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMR  247 (421)
Q Consensus       169 ~~~~~~~n~~~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~  247 (421)
                              .+.     -...+. +.. .+...    ..|..      ++..++..+.. ..+                  
T Consensus       190 --------~l~-----~L~~L~-l~~n~l~~l----~~~~~------L~~L~ls~n~l-~~~------------------  226 (597)
T 3oja_B          190 --------LIP-----SLFHAN-VSYNLLSTL----AIPIA------VEELDASHNSI-NVV------------------  226 (597)
T ss_dssp             --------GCT-----TCSEEE-CCSSCCSEE----ECCTT------CSEEECCSSCC-CEE------------------
T ss_pred             --------hhh-----hhhhhh-cccCccccc----cCCch------hheeeccCCcc-ccc------------------
Confidence                    000     000011 100 01000    00000      01111110000 000                  


Q ss_pred             cCccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC--CCCchhhhcCCCCC
Q psy9363         248 RDKLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN--DTSGVMEQIFPQGH  325 (421)
Q Consensus       248 ~~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~--~~~~~~~~~l~~~~  325 (421)
                          . +                                ..      .      .+|+.+.+++  -..+..+..+  ++
T Consensus       227 ----~-~--------------------------------~~------~------~~L~~L~L~~n~l~~~~~l~~l--~~  255 (597)
T 3oja_B          227 ----R-G--------------------------------PV------N------VELTILKLQHNNLTDTAWLLNY--PG  255 (597)
T ss_dssp             ----E-C--------------------------------SC------C------SCCCEEECCSSCCCCCGGGGGC--TT
T ss_pred             ----c-c--------------------------------cc------C------CCCCEEECCCCCCCCChhhccC--CC
Confidence                0 0                                00      0      0233343433  1113567788  99


Q ss_pred             ccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363         326 IHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA  404 (421)
Q Consensus       326 L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls  404 (421)
                      |+.|+|++|.++ +.++..+..+++ +.|+|++|.++.+|.....+++|+.|+|++|.+..+  +..++.+++|+.|+|+
T Consensus       256 L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l~~L~~L~L~  332 (597)
T 3oja_B          256 LVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLD  332 (597)
T ss_dssp             CSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECC
T ss_pred             CCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCcc--CcccccCCCCCEEECC
Confidence            999999999998 223356777888 999999999999887777899999999999999764  4467889999999999


Q ss_pred             cccCcccCCC
Q psy9363         405 STNLRNIKLN  414 (421)
Q Consensus       405 ~N~l~~i~~p  414 (421)
                      +|+|+.+++.
T Consensus       333 ~N~l~~~~~~  342 (597)
T 3oja_B          333 HNSIVTLKLS  342 (597)
T ss_dssp             SSCCCCCCCC
T ss_pred             CCCCCCcChh
Confidence            9999887543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.72  E-value=7.1e-18  Score=170.45  Aligned_cols=121  Identities=13%  Similarity=0.130  Sum_probs=85.7

Q ss_pred             ceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEE
Q psy9363         279 EEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCL  353 (421)
Q Consensus       279 ~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L  353 (421)
                      ....+.++...+....  .+....+|+.+++++   ..++. +..+  ++|+.|+|++|.++ ...    +..+++ +.|
T Consensus       266 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~L~~n~l~~~~~-~~~l--~~L~~L~L~~n~l~~~~~----~~~l~~L~~L  336 (466)
T 1o6v_A          266 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISP-ISNL--KNLTYLTLYFNNISDISP----VSSLTKLQRL  336 (466)
T ss_dssp             TCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCCGG-GGGC--TTCSEEECCSSCCSCCGG----GGGCTTCCEE
T ss_pred             CCCEEECCCCccCccc--cccCCCccCeEEcCCCcccCchh-hcCC--CCCCEEECcCCcCCCchh----hccCccCCEe
Confidence            3444555554443222  122223677777765   23333 6778  89999999999888 321    567788 999


Q ss_pred             EccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         354 KLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       354 ~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      ++++|.+++++ .+..+++|+.|++++|+++++. +  +..+++|+.|++++|+++.++
T Consensus       337 ~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~-~--~~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          337 FFYNNKVSDVS-SLANLTNINWLSAGHNQISDLT-P--LANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             ECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCG-G--GTTCTTCCEEECCCEEEECCC
T ss_pred             ECCCCccCCch-hhccCCCCCEEeCCCCccCccc-h--hhcCCCCCEEeccCCcccCCc
Confidence            99999998874 4678899999999999997654 2  788899999999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=1.6e-17  Score=160.97  Aligned_cols=100  Identities=20%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL   96 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l   96 (421)
                      .+++|++|++++|.+.+++.    ++.+++|++|++ +|++..  ++. ...+++|++|+|++|.+.. ++   . +..+
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~----~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~---~-~~~l  109 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG----IEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS---A-LQNL  109 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT----GGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG---G-GTTC
T ss_pred             hcccccEEEEeCCccccchh----hhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch---H-HcCC
Confidence            56789999999999987643    567899999999 587773  344 6688899999998776643 22   2 6779


Q ss_pred             CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      ++|++|++++|.+....      .  ++.+++|+.|+.+..
T Consensus       110 ~~L~~L~l~~n~i~~~~------~--~~~l~~L~~L~l~~n  142 (347)
T 4fmz_A          110 TNLRELYLNEDNISDIS------P--LANLTKMYSLNLGAN  142 (347)
T ss_dssp             TTCSEEECTTSCCCCCG------G--GTTCTTCCEEECTTC
T ss_pred             CcCCEEECcCCcccCch------h--hccCCceeEEECCCC
Confidence            99999999999885432      1  778888998888753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=7.8e-19  Score=183.14  Aligned_cols=103  Identities=17%  Similarity=0.189  Sum_probs=85.9

Q ss_pred             CCCccCCCC-----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcE
Q psy9363         303 NTNKLPIPN-----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~-----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~  375 (421)
                      .++.+.+++     ...|..+..+  ++|+.|+|++|.|+ .-.+..+..+++ ++|+|++|+|+.+++. +..+++|++
T Consensus       470 ~L~~L~Ls~N~~~~~~~~~~~~~l--~~L~~L~Ls~N~L~-~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          470 SLEVLKMAGNSFQENFLPDIFTEL--RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TCCEEECTTCEEGGGEECSCCTTC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             hhhhhhhhhcccccccCchhhhhc--cccCEEECCCCccC-CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            677777765     3356778899  99999999999998 222356778899 9999999999998764 488999999


Q ss_pred             EECcCCCCCCCCcccccCcc-ccccccccccccCc
Q psy9363         376 LYLQENNIVDWGEVNALGSL-PNLKYLNLASTNLR  409 (421)
Q Consensus       376 L~Ls~N~l~~~~~~~~l~~l-~~L~~L~Ls~N~l~  409 (421)
                      |+|++|+|+... +..+..+ ++|+.|+|++|+++
T Consensus       547 L~Ls~N~l~~~~-~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          547 LDYSLNHIMTSK-KQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             EECTTSCCCBCC-SSCTTCCCTTCCEEECTTCCBC
T ss_pred             EECCCCcCCCCC-HHHHHhhhCcCCEEEeeCCCCc
Confidence            999999997765 6778887 68999999999985

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.72  E-value=3.6e-17  Score=158.45  Aligned_cols=277  Identities=15%  Similarity=0.137  Sum_probs=163.2

Q ss_pred             hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363          17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY   95 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~   95 (421)
                      ..+++|++|+|++|.|++++.    +..+++|++|+| +|.+..  ++ .++.+++|++|+|++|.+..-..     +..
T Consensus        63 ~~~~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~l~~n~i~~~~~-----~~~  130 (347)
T 4fmz_A           63 EYLTNLEYLNLNGNQITDISP----LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELYLNEDNISDISP-----LAN  130 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEECTTSCCCCCGG-----GTT
T ss_pred             hhcCCccEEEccCCccccchh----hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEECcCCcccCchh-----hcc
Confidence            468999999999999997654    788999999999 588883  44 46788999999998887744322     667


Q ss_pred             CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCC
Q psy9363          96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGD  175 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  175 (421)
                      +++|++|++++|+.....       ..+..+++|+.|+.+.....+...        +...+              .   
T Consensus       131 l~~L~~L~l~~n~~~~~~-------~~~~~l~~L~~L~l~~~~~~~~~~--------~~~l~--------------~---  178 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDL-------SPLSNMTGLNYLTVTESKVKDVTP--------IANLT--------------D---  178 (347)
T ss_dssp             CTTCCEEECTTCTTCCCC-------GGGTTCTTCCEEECCSSCCCCCGG--------GGGCT--------------T---
T ss_pred             CCceeEEECCCCCCcccc-------cchhhCCCCcEEEecCCCcCCchh--------hccCC--------------C---
Confidence            999999999999764432       237889999999887543221100        00000              0   


Q ss_pred             cccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCc
Q psy9363         176 NYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS  255 (421)
Q Consensus       176 n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~  255 (421)
                                -..+. +.    .+++.+ ++. ...+..++..+...+...                       .     
T Consensus       179 ----------L~~L~-l~----~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-----------------------~-----  213 (347)
T 4fmz_A          179 ----------LYSLS-LN----YNQIED-ISP-LASLTSLHYFTAYVNQIT-----------------------D-----  213 (347)
T ss_dssp             ----------CSEEE-CT----TSCCCC-CGG-GGGCTTCCEEECCSSCCC-----------------------C-----
T ss_pred             ----------CCEEE-cc----CCcccc-ccc-ccCCCccceeecccCCCC-----------------------C-----
Confidence                      00011 00    000000 000 000000111111100000                       0     


Q ss_pred             hhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEee
Q psy9363         256 SFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTLG  332 (421)
Q Consensus       256 ~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls  332 (421)
                       +..              +........+.+++..+.....  +....+|+.+++++   ..+ ..+..+  ++|+.|+++
T Consensus       214 -~~~--------------~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l--~~L~~L~l~  273 (347)
T 4fmz_A          214 -ITP--------------VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDL--TKLKMLNVG  273 (347)
T ss_dssp             -CGG--------------GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTC--TTCCEEECC
T ss_pred             -Cch--------------hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcC--CCcCEEEcc
Confidence             000              0111122333343433322221  22222666666665   223 346677  888888898


Q ss_pred             Ccccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         333 NMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       333 ~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      +|.++ +    ..+..+++ +.|++++|.++.+++. +..+++|+.|++++|.++...   .+..+++|+.|++++|+|+
T Consensus       274 ~n~l~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          274 SNQISDI----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR---PLASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSCCCCC----GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCG---GGGGCTTCSEESSSCC---
T ss_pred             CCccCCC----hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccccc---Chhhhhccceeehhhhccc
Confidence            88888 4    23566788 8889988888865433 367888888999998887643   2778888889999888876

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.71  E-value=5.1e-17  Score=156.53  Aligned_cols=104  Identities=20%  Similarity=0.121  Sum_probs=82.0

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      .++|++|+|++|.|+.+.  +..++++++|++|+| +|++. ...|..++.+++|++|+|++|.+..-+..      .++
T Consensus        51 ~~~l~~L~L~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~------~~~  121 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIK--DGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEK------MPK  121 (330)
T ss_dssp             CTTCCEEECCSSCCCCBC--TTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCSBCCSS------CCT
T ss_pred             CCCCeEEECCCCcCCEeC--hhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECCCCcCCccChh------hcc
Confidence            368999999999999653  345788999999999 58888 34566778889999999988876432222      248


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      +|++|++++|.+..      ..+..++.+++|+.|+++..
T Consensus       122 ~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n  155 (330)
T 1xku_A          122 TLQELRVHENEITK------VRKSVFNGLNQMIVVELGTN  155 (330)
T ss_dssp             TCCEEECCSSCCCB------BCHHHHTTCTTCCEEECCSS
T ss_pred             cccEEECCCCcccc------cCHhHhcCCccccEEECCCC
Confidence            99999999999843      34567899999999998753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=1.3e-17  Score=167.94  Aligned_cols=88  Identities=15%  Similarity=0.104  Sum_probs=62.6

Q ss_pred             hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSL  395 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  395 (421)
                      +..+  ++|+.|+|++|.|+ ...+..+..+++ +.|+|++|+++.+++. +..+++|+.|+|++|+|+..+ ...+..+
T Consensus       214 ~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l  289 (452)
T 3zyi_A          214 LTPL--VGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP-HDLFTPL  289 (452)
T ss_dssp             CTTC--TTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-TTSSTTC
T ss_pred             cccc--ccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC-hHHhccc
Confidence            3456  78888888888887 112245667777 8888888888866543 367788888888888886654 4566777


Q ss_pred             ccccccccccccCc
Q psy9363         396 PNLKYLNLASTNLR  409 (421)
Q Consensus       396 ~~L~~L~Ls~N~l~  409 (421)
                      ++|+.|+|++|++.
T Consensus       290 ~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          290 RYLVELHLHHNPWN  303 (452)
T ss_dssp             TTCCEEECCSSCEE
T ss_pred             cCCCEEEccCCCcC
Confidence            88888888888753

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.71  E-value=7.6e-17  Score=155.30  Aligned_cols=99  Identities=13%  Similarity=-0.039  Sum_probs=73.7

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      +++.++++++.++.++   ..+  .++|+.|+| +|+++. ..+..++.+++|++|+|++|.+.+..+..   +..+++|
T Consensus        32 ~l~~l~~~~~~l~~lp---~~~--~~~l~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L  102 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVP---KDL--PPDTALLDLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGA---FAPLVKL  102 (330)
T ss_dssp             ETTEEECTTSCCCSCC---CSC--CTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEECCSSCCCCBCTTT---TTTCTTC
T ss_pred             CCeEEEecCCCccccC---ccC--CCCCeEEECCCCcCCE-eChhhhccCCCCCEEECCCCcCCeeCHHH---hcCCCCC
Confidence            7999999999998653   211  378999999 588883 34445778999999999888775543333   6779999


Q ss_pred             ceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363         100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus       100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      ++|++++|.+....  .     .+  .++|+.|+++..
T Consensus       103 ~~L~Ls~n~l~~l~--~-----~~--~~~L~~L~l~~n  131 (330)
T 1xku_A          103 ERLYLSKNQLKELP--E-----KM--PKTLQELRVHEN  131 (330)
T ss_dssp             CEEECCSSCCSBCC--S-----SC--CTTCCEEECCSS
T ss_pred             CEEECCCCcCCccC--h-----hh--cccccEEECCCC
Confidence            99999999986432  1     11  268888888653

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=6.2e-18  Score=174.85  Aligned_cols=104  Identities=20%  Similarity=0.145  Sum_probs=79.8

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      .++|++|||++|.|+..  .+..++.+++|++|+| +|+++. ..|..++.+++|++|+|++|.+. .++..     .++
T Consensus        51 ~~~L~~L~Ls~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~-----~l~  121 (562)
T 3a79_B           51 PPRTKALSLSQNSISEL--RMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDLEYLDVSHNRLQ-NISCC-----PMA  121 (562)
T ss_dssp             CTTCCEEECCSSCCCCC--CGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTCCEEECTTSCCC-EECSC-----CCT
T ss_pred             CCCcCEEECCCCCcccc--ChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCCCEEECCCCcCC-ccCcc-----ccc
Confidence            37899999999999854  2456788999999999 588883 44566678899999999888774 33322     589


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      +|++|++++|.+....     .+..++.+++|++|+++.
T Consensus       122 ~L~~L~Ls~N~l~~l~-----~p~~~~~l~~L~~L~L~~  155 (562)
T 3a79_B          122 SLRHLDLSFNDFDVLP-----VCKEFGNLTKLTFLGLSA  155 (562)
T ss_dssp             TCSEEECCSSCCSBCC-----CCGGGGGCTTCCEEEEEC
T ss_pred             cCCEEECCCCCccccC-----chHhhcccCcccEEecCC
Confidence            9999999999985422     235688999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=1.9e-17  Score=166.01  Aligned_cols=87  Identities=16%  Similarity=0.098  Sum_probs=66.4

Q ss_pred             hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSL  395 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  395 (421)
                      +..+  ++|+.|+|++|.|+ ...+..+..+++ +.|+|++|+|+.+++. +..+++|+.|+|++|+|+.++ ...+..+
T Consensus       203 ~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l  278 (440)
T 3zyj_A          203 LTPL--IKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP-HDLFTPL  278 (440)
T ss_dssp             CTTC--SSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC-TTTTSSC
T ss_pred             cCCC--cccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC-hhHhccc
Confidence            4566  88888888888887 111245667788 8888888888876654 377888888888888887665 5567788


Q ss_pred             ccccccccccccC
Q psy9363         396 PNLKYLNLASTNL  408 (421)
Q Consensus       396 ~~L~~L~Ls~N~l  408 (421)
                      ++|+.|+|++|++
T Consensus       279 ~~L~~L~L~~Np~  291 (440)
T 3zyj_A          279 HHLERIHLHHNPW  291 (440)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEcCCCCc
Confidence            8888888888886

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.69  E-value=1.1e-17  Score=159.35  Aligned_cols=107  Identities=18%  Similarity=0.113  Sum_probs=78.4

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCC-CCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSS-SAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL   96 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~-~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l   96 (421)
                      .++|++|+|++|.|+..+  +..++++++|++|+| +|++... ..+.....+++|++|+|++|.+..-+..    +..+
T Consensus        27 ~~~l~~L~L~~n~l~~i~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~----~~~l  100 (306)
T 2z66_A           27 PSSATRLELESNKLQSLP--HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGL  100 (306)
T ss_dssp             CTTCCEEECCSSCCCCCC--TTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEE----EETC
T ss_pred             CCCCCEEECCCCccCccC--HhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhh----cCCC
Confidence            368999999999998543  234678999999999 5888731 1234445678999999988866432222    5679


Q ss_pred             CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      ++|++|++++|.+....     ....+..+++|++|+++.
T Consensus       101 ~~L~~L~l~~n~l~~~~-----~~~~~~~l~~L~~L~l~~  135 (306)
T 2z66_A          101 EQLEHLDFQHSNLKQMS-----EFSVFLSLRNLIYLDISH  135 (306)
T ss_dssp             TTCCEEECTTSEEESST-----TTTTTTTCTTCCEEECTT
T ss_pred             CCCCEEECCCCcccccc-----cchhhhhccCCCEEECCC
Confidence            99999999999985432     113577888899888863

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=3.7e-17  Score=157.74  Aligned_cols=108  Identities=14%  Similarity=0.044  Sum_probs=63.7

Q ss_pred             ChhHHhhhCC-----CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCc
Q psy9363          11 THDEIEQAVP-----FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDE   84 (421)
Q Consensus        11 ~~~~~~~~~~-----~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~   84 (421)
                      .|..+...||     +++.+++++|.++.+   |..+  .++|++|+| +|++.. ..|..++.+++|++|+|++|.+.+
T Consensus        19 lp~~~~~~cp~~c~c~l~~l~~~~~~l~~i---p~~~--~~~l~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~   92 (332)
T 2ft3_A           19 LPPTYSAMCPFGCHCHLRVVQCSDLGLKAV---PKEI--SPDTTLLDLQNNDISE-LRKDDFKGLQHLYALVLVNNKISK   92 (332)
T ss_dssp             ------CCCCSSCEEETTEEECCSSCCSSC---CSCC--CTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCCE
T ss_pred             CCCcccCCCCCCCcccCCEEECCCCCcccc---CCCC--CCCCeEEECCCCcCCc-cCHhHhhCCCCCcEEECCCCccCc
Confidence            3444445554     688888888887744   3222  367888888 477763 334456677788888887766644


Q ss_pred             chhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          85 DFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        85 ~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      ..+..   +..+++|++|++++|.+.....       .+.  ++|+.|+++.
T Consensus        93 ~~~~~---~~~l~~L~~L~L~~n~l~~l~~-------~~~--~~L~~L~l~~  132 (332)
T 2ft3_A           93 IHEKA---FSPLRKLQKLYISKNHLVEIPP-------NLP--SSLVELRIHD  132 (332)
T ss_dssp             ECGGG---STTCTTCCEEECCSSCCCSCCS-------SCC--TTCCEEECCS
T ss_pred             cCHhH---hhCcCCCCEEECCCCcCCccCc-------ccc--ccCCEEECCC
Confidence            32322   5667888888888887753321       111  5677777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=1.1e-16  Score=154.38  Aligned_cols=104  Identities=16%  Similarity=0.058  Sum_probs=81.5

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      .++|++|+|++|.|+..  .+..+..+++|++|+| +|+++ ...|..++.+++|++|+|++|.+..-+..+      ++
T Consensus        53 ~~~l~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~------~~  123 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISEL--RKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL------PS  123 (332)
T ss_dssp             CTTCCEEECCSSCCCEE--CTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC------CT
T ss_pred             CCCCeEEECCCCcCCcc--CHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc------cc
Confidence            46899999999999843  2456788999999999 58888 345666788999999999888774322222      48


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      +|++|++++|.+...      .+..++.+++|+.|+.+..
T Consensus       124 ~L~~L~l~~n~i~~~------~~~~~~~l~~L~~L~l~~n  157 (332)
T 2ft3_A          124 SLVELRIHDNRIRKV------PKGVFSGLRNMNCIEMGGN  157 (332)
T ss_dssp             TCCEEECCSSCCCCC------CSGGGSSCSSCCEEECCSC
T ss_pred             cCCEEECCCCccCcc------CHhHhCCCccCCEEECCCC
Confidence            999999999998543      2445788999999998753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.68  E-value=9e-17  Score=151.53  Aligned_cols=83  Identities=24%  Similarity=0.300  Sum_probs=42.2

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCccc-CCCCCCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      ++|+.|+|++|.++ .+.  ..+..+++ ++|+|++|.++.+ |..+..+++|+.|++++|.++..+ +..+..+++|+.
T Consensus       153 ~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  229 (285)
T 1ozn_A          153 GNLTHLFLHGNRISSVPE--RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP-TEALAPLRALQY  229 (285)
T ss_dssp             TTCCEEECCSSCCCEECT--TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC-HHHHTTCTTCCE
T ss_pred             CCccEEECCCCcccccCH--HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC-HHHcccCcccCE
Confidence            55555555555555 111  22344455 5555555555544 223345555555555555554433 234555555555


Q ss_pred             cccccccCc
Q psy9363         401 LNLASTNLR  409 (421)
Q Consensus       401 L~Ls~N~l~  409 (421)
                      |++++|++.
T Consensus       230 L~l~~N~~~  238 (285)
T 1ozn_A          230 LRLNDNPWV  238 (285)
T ss_dssp             EECCSSCEE
T ss_pred             EeccCCCcc
Confidence            555555553

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.67  E-value=6.1e-17  Score=155.10  Aligned_cols=228  Identities=16%  Similarity=0.117  Sum_probs=153.8

Q ss_pred             CCCceeec-ccccCCC--CCCcccccccccchhccc-cccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHHH
Q psy9363          46 KHLRHLNL-RIRLKSS--SAPAHSYLAEVVFFVHLG-RTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREK  121 (421)
Q Consensus        46 ~~L~~L~L-~N~l~~~--~~p~~~~~~~~L~~L~L~-~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~  121 (421)
                      .+++.|+| +|.+. +  .+|..++.+++|++|+|+ +|.+.+.++..   +..+++|++|+|++|.+.      +..+.
T Consensus        50 ~~l~~L~L~~~~l~-~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~---l~~l~~L~~L~Ls~n~l~------~~~p~  119 (313)
T 1ogq_A           50 YRVNNLDLSGLNLP-KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA---IAKLTQLHYLYITHTNVS------GAIPD  119 (313)
T ss_dssp             CCEEEEEEECCCCS-SCEECCGGGGGCTTCSEEEEEEETTEESCCCGG---GGGCTTCSEEEEEEECCE------EECCG
T ss_pred             ceEEEEECCCCCcc-CCcccChhHhCCCCCCeeeCCCCCcccccCChh---HhcCCCCCEEECcCCeeC------CcCCH
Confidence            58999999 58888 5  678888999999999998 36554554443   678999999999999984      23455


Q ss_pred             HHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCcccccccCCCCceEEeecCceeEEEE
Q psy9363         122 TIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRY  201 (421)
Q Consensus       122 ~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~  201 (421)
                      .++.+++|++||++.....             +..+                  ..+..    .. .+..+  +++.+++
T Consensus       120 ~~~~l~~L~~L~Ls~N~l~-------------~~~p------------------~~~~~----l~-~L~~L--~L~~N~l  161 (313)
T 1ogq_A          120 FLSQIKTLVTLDFSYNALS-------------GTLP------------------PSISS----LP-NLVGI--TFDGNRI  161 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEE-------------SCCC------------------GGGGG----CT-TCCEE--ECCSSCC
T ss_pred             HHhCCCCCCEEeCCCCccC-------------CcCC------------------hHHhc----CC-CCCeE--ECcCCcc
Confidence            7889999999988632111             0000                  00000    00 00000  1111111


Q ss_pred             ecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHHhhhhhccccchhhhcccccee
Q psy9363         202 VGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEALHRKYVETDNELTVRENVEEV  281 (421)
Q Consensus       202 ~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~  281 (421)
                      .|.+|...+                                                                       
T Consensus       162 ~~~~p~~l~-----------------------------------------------------------------------  170 (313)
T 1ogq_A          162 SGAIPDSYG-----------------------------------------------------------------------  170 (313)
T ss_dssp             EEECCGGGG-----------------------------------------------------------------------
T ss_pred             cCcCCHHHh-----------------------------------------------------------------------
Confidence            111111000                                                                       


Q ss_pred             eeeecCceeEeecccchhhhh-CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEc
Q psy9363         282 KASINAPFLELVGFDQVHEEQ-NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKL  355 (421)
Q Consensus       282 ~~~~~~~~~e~~g~~~l~~~~-~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L  355 (421)
                                        ... .|+.+.+++    +.+|..+..+  + |+.|+|++|.++ ..++..+..+++ +.|+|
T Consensus       171 ------------------~l~~~L~~L~L~~N~l~~~~~~~~~~l--~-L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L  228 (313)
T 1ogq_A          171 ------------------SFSKLFTSMTISRNRLTGKIPPTFANL--N-LAFVDLSRNMLE-GDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             ------------------CCCTTCCEEECCSSEEEEECCGGGGGC--C-CSEEECCSSEEE-ECCGGGCCTTSCCSEEEC
T ss_pred             ------------------hhhhcCcEEECcCCeeeccCChHHhCC--c-ccEEECcCCccc-CcCCHHHhcCCCCCEEEC
Confidence                              000 222233322    4567788888  6 999999999998 334466788899 99999


Q ss_pred             cCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCCCCC
Q psy9363         356 PSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLNKE  416 (421)
Q Consensus       356 ~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p~~  416 (421)
                      ++|.++..++.+..+++|++|+|++|+++.. .+..+..+++|+.|+|++|++++ .+|..
T Consensus       229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~l~~l~~L~~L~Ls~N~l~~-~ip~~  287 (313)
T 1ogq_A          229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT-LPQGLTQLKFLHSLNVSFNNLCG-EIPQG  287 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSSCCEEC-CCGGGGGCTTCCEEECCSSEEEE-ECCCS
T ss_pred             CCCceeeecCcccccCCCCEEECcCCcccCc-CChHHhcCcCCCEEECcCCcccc-cCCCC
Confidence            9999996555578889999999999999533 36689999999999999999997 45554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.67  E-value=4e-18  Score=163.19  Aligned_cols=87  Identities=14%  Similarity=0.054  Sum_probs=70.8

Q ss_pred             hhhcCCCCCccEEEeeCcccchhhHH-HHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYIWADIL-KLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS  394 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~-~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  394 (421)
                      .+..+  ++|+.|+|++|.++ ..++ ..+..+++ ++|+|++|+|+.+|..+.  ++|+.|+|++|+|+..+   .+..
T Consensus       223 ~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~p---~~~~  294 (312)
T 1wwl_A          223 LAAAR--VQLQGLDLSHNSLR-DAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRNP---SPDE  294 (312)
T ss_dssp             HHHTT--CCCSEEECTTSCCC-SSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSCC---CTTT
T ss_pred             HHhcC--CCCCEEECCCCcCC-cccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCCh---hHhh
Confidence            45678  99999999999998 2111 23445678 999999999999887554  89999999999998763   2888


Q ss_pred             cccccccccccccCccc
Q psy9363         395 LPNLKYLNLASTNLRNI  411 (421)
Q Consensus       395 l~~L~~L~Ls~N~l~~i  411 (421)
                      +++|++|++++|++++.
T Consensus       295 l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          295 LPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             SCEEEEEECTTCTTTCC
T ss_pred             CCCCCEEeccCCCCCCC
Confidence            99999999999999873

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.67  E-value=5.7e-16  Score=156.47  Aligned_cols=278  Identities=15%  Similarity=0.177  Sum_probs=153.0

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH   94 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~   94 (421)
                      ...+++|++|+|++|.+++...    ++++++|++|+| +|.+..  ++. ++.+++|++|+|++|.+..- ..    +.
T Consensus        86 ~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~--~~~-~~~l~~L~~L~l~~n~l~~~-~~----~~  153 (466)
T 1o6v_A           86 LKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNNQITD--IDP-LKNLTNLNRLELSSNTISDI-SA----LS  153 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCC--CGG-GTTCTTCSEEEEEEEEECCC-GG----GT
T ss_pred             hhccccCCEEECCCCccccChh----hcCCCCCCEEECCCCCCCC--ChH-HcCCCCCCEEECCCCccCCC-hh----hc
Confidence            4468899999999999986543    788999999999 588873  333 67889999999987766432 22    56


Q ss_pred             hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363          95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG  174 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (421)
                      .+++|++|++. |.+...      .  .++.+++|+.|+.+.......  .      .+...              +.. 
T Consensus       154 ~l~~L~~L~l~-~~~~~~------~--~~~~l~~L~~L~l~~n~l~~~--~------~l~~l--------------~~L-  201 (466)
T 1o6v_A          154 GLTSLQQLSFG-NQVTDL------K--PLANLTTLERLDISSNKVSDI--S------VLAKL--------------TNL-  201 (466)
T ss_dssp             TCTTCSEEEEE-ESCCCC------G--GGTTCTTCCEEECCSSCCCCC--G------GGGGC--------------TTC-
T ss_pred             cCCcccEeecC-CcccCc------h--hhccCCCCCEEECcCCcCCCC--h------hhccC--------------CCC-
Confidence            68888888886 333221      1  267777888887764332110  0      00000              000 


Q ss_pred             CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                                  ..+.     ++.+++.+..|  .+.+..++..++..++..                       .+  +
T Consensus       202 ------------~~L~-----l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-----------------------~~--~  237 (466)
T 1o6v_A          202 ------------ESLI-----ATNNQISDITP--LGILTNLDELSLNGNQLK-----------------------DI--G  237 (466)
T ss_dssp             ------------SEEE-----CCSSCCCCCGG--GGGCTTCCEEECCSSCCC-----------------------CC--G
T ss_pred             ------------CEEE-----ecCCccccccc--ccccCCCCEEECCCCCcc-----------------------cc--h
Confidence                        0000     11111111111  011111111111100000                       00  0


Q ss_pred             chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEe
Q psy9363         255 SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTL  331 (421)
Q Consensus       255 ~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~L  331 (421)
                       .+                 ........+.++...+....  .+....+|+.+.+++   ..++. +..+  ++|+.|+|
T Consensus       238 -~l-----------------~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~-~~~l--~~L~~L~L  294 (466)
T 1o6v_A          238 -TL-----------------ASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP-LAGL--TALTNLEL  294 (466)
T ss_dssp             -GG-----------------GGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG-GTTC--TTCSEEEC
T ss_pred             -hh-----------------hcCCCCCEEECCCCccccch--hhhcCCCCCEEECCCCccCcccc-ccCC--CccCeEEc
Confidence             00                 01111222333332222111  122222566666665   22333 6667  78888888


Q ss_pred             eCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         332 GNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       332 s~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      ++|.++ ...    +..+++ +.|+|++|+++++++ +..+++|+.|++++|.++..   ..++.+++|+.|++++|+++
T Consensus       295 ~~n~l~~~~~----~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~  366 (466)
T 1o6v_A          295 NENQLEDISP----ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQIS  366 (466)
T ss_dssp             CSSCCSCCGG----GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCC
T ss_pred             CCCcccCchh----hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccC
Confidence            888877 321    556777 888888888877654 56777888888888887653   35677788888888888877


Q ss_pred             ccC
Q psy9363         410 NIK  412 (421)
Q Consensus       410 ~i~  412 (421)
                      ++.
T Consensus       367 ~~~  369 (466)
T 1o6v_A          367 DLT  369 (466)
T ss_dssp             BCG
T ss_pred             ccc
Confidence            654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.67  E-value=2.6e-17  Score=158.74  Aligned_cols=94  Identities=14%  Similarity=0.028  Sum_probs=68.3

Q ss_pred             CchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcccc
Q psy9363         314 SGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVNA  391 (421)
Q Consensus       314 ~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  391 (421)
                      +|..+..+  ++|++|+|++|.+. +.++..+..+++ +.|+|++|.+. .+|..+..+++|+.|+|++|.+ ....+..
T Consensus       221 l~~~l~~l--~~L~~L~Ls~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~-~~~iP~~  296 (328)
T 4fcg_A          221 LGPAIHHL--PKLEELDLRGCTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN-LSRLPSL  296 (328)
T ss_dssp             CCGGGGGC--TTCCEEECTTCTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT-CCCCCGG
T ss_pred             CchhhccC--CCCCEEECcCCcch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc-hhhccHH
Confidence            45557777  88888888888776 334455667777 88888887665 5666667788888888888877 3344667


Q ss_pred             cCccccccccccccccCccc
Q psy9363         392 LGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       392 l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      ++.+++|+.++++.|.+..+
T Consensus       297 l~~L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          297 IAQLPANCIILVPPHLQAQL  316 (328)
T ss_dssp             GGGSCTTCEEECCGGGSCC-
T ss_pred             HhhccCceEEeCCHHHHHHH
Confidence            88888888888887777654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.66  E-value=2.6e-16  Score=147.68  Aligned_cols=93  Identities=17%  Similarity=0.140  Sum_probs=63.1

Q ss_pred             chhhhcCCCCCccEEEeeCcccc-hh-hHHHHhccCCC-c-EEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363         315 GVMEQIFPQGHIHTLTLGNMGYI-WA-DILKLLANFPV-T-CLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       315 ~~~~~~l~~~~L~~L~Ls~N~l~-~~-~i~~~~~~l~~-~-~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      |..+..+  ++|+.|+|++|.++ .. .....+..++. . .|++++|.++.++.......+|+.|+|++|+++.++ ..
T Consensus       142 ~~~~~~l--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~  218 (276)
T 2z62_A          142 PEYFSNL--TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVP-DG  218 (276)
T ss_dssp             CGGGGGC--TTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCC-TT
T ss_pred             chhhccC--CCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecC-Hh
Confidence            4455667  78888888888877 21 11122233333 2 788888888877765555557888888888887654 44


Q ss_pred             ccCccccccccccccccCcc
Q psy9363         391 ALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      .++.+++|+.|++++|+++.
T Consensus       219 ~~~~l~~L~~L~l~~N~~~c  238 (276)
T 2z62_A          219 IFDRLTSLQKIWLHTNPWDC  238 (276)
T ss_dssp             TTTTCCSCCEEECCSSCBCC
T ss_pred             HhcccccccEEEccCCcccc
Confidence            56778888888888888864

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.65  E-value=4.7e-17  Score=158.31  Aligned_cols=106  Identities=16%  Similarity=0.089  Sum_probs=66.4

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ++|++|+|++|.|+..+  +..+.++++|++|+| +|++.. ..|..++.+++|++|+|++|.++.-+...   +..+++
T Consensus        52 ~~L~~L~l~~n~i~~~~--~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~---~~~l~~  125 (353)
T 2z80_A           52 EAVKSLDLSNNRITYIS--NSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLSNLSSSW---FKPLSS  125 (353)
T ss_dssp             TTCCEEECTTSCCCEEC--TTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSSCCHHH---HTTCTT
T ss_pred             ccCcEEECCCCcCcccC--HHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCCcCCHhH---hCCCcc
Confidence            47777788777777432  224567777777777 477763 33444566777777777766664433322   556777


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      |++|++++|++.....     ...++.+++|++|+++.
T Consensus       126 L~~L~L~~n~l~~l~~-----~~~~~~l~~L~~L~l~~  158 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGE-----TSLFSHLTKLQILRVGN  158 (353)
T ss_dssp             CSEEECTTCCCSSSCS-----SCSCTTCTTCCEEEEEE
T ss_pred             CCEEECCCCCCcccCc-----hhhhccCCCCcEEECCC
Confidence            7788887777743220     02456677777777653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.64  E-value=3.5e-17  Score=156.97  Aligned_cols=244  Identities=16%  Similarity=0.140  Sum_probs=151.8

Q ss_pred             hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363          12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG   90 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~   90 (421)
                      +..+...+++|++|||++|.|++.  .+..++.+++|++|+| +|++.+ ..+  ++.+++|++|+|++|.+++      
T Consensus        26 ~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~Ls~n~l~~------   94 (317)
T 3o53_A           26 LASLRQSAWNVKELDLSGNPLSQI--SAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQE------   94 (317)
T ss_dssp             HHHHHTTGGGCSEEECTTSCCCCC--CHHHHTTCTTCCEEECTTSCCEE-EEE--ETTCTTCCEEECCSSEEEE------
T ss_pred             HHHHhccCCCCCEEECcCCccCcC--CHHHhhCCCcCCEEECCCCcCCc-chh--hhhcCCCCEEECcCCcccc------
Confidence            345666777899999999999853  4567788999999999 588873 222  5677889999998776633      


Q ss_pred             HHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhC
Q psy9363          91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEAN  170 (421)
Q Consensus        91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~  170 (421)
                        +..+++|++|++++|.+....         ...+++|+.|+++....                               
T Consensus        95 --l~~~~~L~~L~l~~n~l~~~~---------~~~~~~L~~L~l~~N~l-------------------------------  132 (317)
T 3o53_A           95 --LLVGPSIETLHAANNNISRVS---------CSRGQGKKNIYLANNKI-------------------------------  132 (317)
T ss_dssp             --EEECTTCCEEECCSSCCSEEE---------ECCCSSCEEEECCSSCC-------------------------------
T ss_pred             --ccCCCCcCEEECCCCccCCcC---------ccccCCCCEEECCCCCC-------------------------------
Confidence              223688999999999885432         12356777777653211                               


Q ss_pred             CCCCCcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCc
Q psy9363         171 PRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDK  250 (421)
Q Consensus       171 ~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~  250 (421)
                              .+.                       .+...+....++..++..++.                         
T Consensus       133 --------~~~-----------------------~~~~~~~l~~L~~L~Ls~N~l-------------------------  156 (317)
T 3o53_A          133 --------TML-----------------------RDLDEGCRSRVQYLDLKLNEI-------------------------  156 (317)
T ss_dssp             --------CSG-----------------------GGBCTGGGSSEEEEECTTSCC-------------------------
T ss_pred             --------CCc-----------------------cchhhhccCCCCEEECCCCCC-------------------------
Confidence                    100                       000000011122222221110                         


Q ss_pred             cccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhh-hCCCccCCCC---CCCchhhhcCCCCCc
Q psy9363         251 LNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEE-QNTNKLPIPN---DTSGVMEQIFPQGHI  326 (421)
Q Consensus       251 l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~-~~L~~l~l~~---~~~~~~~~~l~~~~L  326 (421)
                                                              ..+....+... .+|+.+++++   ..++.. ..+  ++|
T Consensus       157 ----------------------------------------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l--~~L  193 (317)
T 3o53_A          157 ----------------------------------------DTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVF--AKL  193 (317)
T ss_dssp             ----------------------------------------CEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCC--TTC
T ss_pred             ----------------------------------------CcccHHHHhhccCcCCEEECCCCcCcccccc-ccc--ccC
Confidence                                                    00000111000 1333333333   111211 236  899


Q ss_pred             cEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363         327 HTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA  404 (421)
Q Consensus       327 ~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls  404 (421)
                      ++|+|++|.++ .+   ..+..+++ +.|+|++|+|+.+|..+..+++|+.|+|++|.+.....+..+..++.|+.|+++
T Consensus       194 ~~L~Ls~N~l~~l~---~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          194 KTLDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             CEEECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CEEECCCCcCCcch---hhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            99999999998 32   23667788 999999999999988778889999999999999633335677889999999998


Q ss_pred             cc-cCcc
Q psy9363         405 ST-NLRN  410 (421)
Q Consensus       405 ~N-~l~~  410 (421)
                      +| .+++
T Consensus       271 ~~~~l~~  277 (317)
T 3o53_A          271 TVKKLTG  277 (317)
T ss_dssp             HHHHHHS
T ss_pred             CchhccC
Confidence            43 3443

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=9.2e-17  Score=161.97  Aligned_cols=325  Identities=11%  Similarity=0.022  Sum_probs=169.0

Q ss_pred             hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363          12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG   90 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~   90 (421)
                      +..+. .+++|++|||++|.|++.   + .++.+++|++|+| +|++++  +|  ++.+++|++|+|++|.+.+. +   
T Consensus        35 ~~~~~-~l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~--~~--~~~l~~L~~L~Ls~N~l~~~-~---  101 (457)
T 3bz5_A           35 TISEE-QLATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITT--LD--LSQNTNLTYLACDSNKLTNL-D---  101 (457)
T ss_dssp             EEEHH-HHTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSC--CC--CTTCTTCSEEECCSSCCSCC-C---
T ss_pred             ccChh-HcCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCe--Ec--cccCCCCCEEECcCCCCcee-e---
Confidence            33444 468899999999998864   3 3677899999999 588884  33  56778899999987776543 2   


Q ss_pred             HHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhC
Q psy9363          91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEAN  170 (421)
Q Consensus        91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~  170 (421)
                        ++.+++|++|++++|.+...         .++.+++|+.|+.+...-....   +..+..+...              
T Consensus       102 --~~~l~~L~~L~L~~N~l~~l---------~~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L--------------  153 (457)
T 3bz5_A          102 --VTPLTKLTYLNCDTNKLTKL---------DVSQNPLLTYLNCARNTLTEID---VSHNTQLTEL--------------  153 (457)
T ss_dssp             --CTTCTTCCEEECCSSCCSCC---------CCTTCTTCCEEECTTSCCSCCC---CTTCTTCCEE--------------
T ss_pred             --cCCCCcCCEEECCCCcCCee---------cCCCCCcCCEEECCCCccceec---cccCCcCCEE--------------
Confidence              55688888888888887432         1677888888887653322110   0000000000              


Q ss_pred             CCCCCccccccc-CCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363         171 PRVGDNYFQVME-DDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD  249 (421)
Q Consensus       171 ~~~~~n~~~~~~-~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~  249 (421)
                       ....|...+.. +.....+..+  +++.+++.+ +|  .+....++..++..++..+.    . +..       +.+++
T Consensus       154 -~l~~n~~~~~~~~~~l~~L~~L--~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~----~-l~~-------l~~L~  215 (457)
T 3bz5_A          154 -DCHLNKKITKLDVTPQTQLTTL--DCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL----D-LNQ-------NIQLT  215 (457)
T ss_dssp             -ECTTCSCCCCCCCTTCTTCCEE--ECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC----C-CTT-------CTTCS
T ss_pred             -ECCCCCcccccccccCCcCCEE--ECCCCccce-ec--cccCCCCCEEECcCCcCCee----c-ccc-------CCCCC
Confidence             01112111110 0000111101  122222222 22  11111122222221211110    0 000       00111


Q ss_pred             ccccC-chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhh-------CCCccCCCC----CCCchh
Q psy9363         250 KLNFG-SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQ-------NTNKLPIPN----DTSGVM  317 (421)
Q Consensus       250 ~l~~g-~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~-------~L~~l~l~~----~~~~~~  317 (421)
                      .+... ..+.. +.           +........+.++.+.+.......+....       +|+.+++++    +.+|  
T Consensus       216 ~L~Ls~N~l~~-ip-----------~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--  281 (457)
T 3bz5_A          216 FLDCSSNKLTE-ID-----------VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--  281 (457)
T ss_dssp             EEECCSSCCSC-CC-----------CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--
T ss_pred             EEECcCCcccc-cC-----------ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--
Confidence            11100 00000 00           01112233334444333332222221111       455556554    2333  


Q ss_pred             hhcCCCCCccEEEeeCcccchhhHHH--------HhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYIWADILK--------LLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGE  388 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~--------~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~  388 (421)
                      ...+  ++|+.|+|++|.+. +.++.        .+...++ ++|+|++|+|++++  +..+++|+.|++++|+|++++.
T Consensus       282 ~~~l--~~L~~L~Ls~n~~l-~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l~~  356 (457)
T 3bz5_A          282 AEGC--RKIKELDVTHNTQL-YLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDFSS  356 (457)
T ss_dssp             CTTC--TTCCCCCCTTCTTC-CEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBCTT
T ss_pred             cccc--ccCCEEECCCCccc-ceeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCccc
Confidence            4577  89999999999753 11110        1345577 99999999999984  7889999999999999987553


Q ss_pred             cccc----------CccccccccccccccCcccCCCC
Q psy9363         389 VNAL----------GSLPNLKYLNLASTNLRNIKLNK  415 (421)
Q Consensus       389 ~~~l----------~~l~~L~~L~Ls~N~l~~i~~p~  415 (421)
                      ...+          +.+..|..+++++|++++ .+|.
T Consensus       357 L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g-~ip~  392 (457)
T 3bz5_A          357 VGKIPALNNNFEAEGQTITMPKETLTNNSLTI-AVSP  392 (457)
T ss_dssp             GGGSSGGGTSEEEEEEEEECCCBCCBTTBEEE-ECCT
T ss_pred             cccccccCCcEEecceeeecCccccccCcEEE-EcCh
Confidence            3222          234578899999999997 5554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.63  E-value=2.4e-15  Score=151.59  Aligned_cols=78  Identities=15%  Similarity=0.015  Sum_probs=63.4

Q ss_pred             HhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCCceeeecCCCCCCccccchhHH
Q psy9363          42 TCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSRE  120 (421)
Q Consensus        42 ~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~  120 (421)
                      ++++++|++|++ +|.+.+  +| .++.+++|++|+|++|.+++- +     +..+++|++|++++|.+...        
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~~-~-----~~~l~~L~~L~Ls~N~l~~~--------  100 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITTL-D-----LSQNTNLTYLACDSNKLTNL--------  100 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSCC-C-----CTTCTTCSEEECCSSCCSCC--------
T ss_pred             hhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCeE-c-----cccCCCCCEEECcCCCCcee--------
Confidence            456899999999 588884  45 467899999999988877553 2     56799999999999998543        


Q ss_pred             HHHHhccCceeccCCcc
Q psy9363         121 KTIARLGGLKLLNGSAI  137 (421)
Q Consensus       121 ~~i~~l~~L~~ln~s~i  137 (421)
                       .++.+++|++|+++..
T Consensus       101 -~~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A          101 -DVTPLTKLTYLNCDTN  116 (457)
T ss_dssp             -CCTTCTTCCEEECCSS
T ss_pred             -ecCCCCcCCEEECCCC
Confidence             1789999999999754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.62  E-value=7.6e-17  Score=154.27  Aligned_cols=87  Identities=22%  Similarity=0.182  Sum_probs=71.6

Q ss_pred             hcCCCCCccEEEeeCcccc-hhhHH-HHhccCCC-cEEEccCCcCcccCC--CCCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         319 QIFPQGHIHTLTLGNMGYI-WADIL-KLLANFPV-TCLKLPSNRITTLDS--VPGMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       319 ~~l~~~~L~~L~Ls~N~l~-~~~i~-~~~~~l~~-~~L~L~~N~l~~l~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      ..+  ++|++|+|++|.|+ .+.++ .....+++ ++|+|++|+|+++++  ....+++|+.|+|++|+|+.++  ..+.
T Consensus       198 ~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip--~~~~  273 (312)
T 1wwl_A          198 LKF--PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVP--KGLP  273 (312)
T ss_dssp             TSC--TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCC--SSCC
T ss_pred             ccC--CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhh--hhcc
Confidence            577  99999999999998 54444 44567789 999999999997652  2366899999999999998643  3444


Q ss_pred             ccccccccccccccCccc
Q psy9363         394 SLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i  411 (421)
                        ++|+.|+|++|+|+++
T Consensus       274 --~~L~~L~Ls~N~l~~~  289 (312)
T 1wwl_A          274 --AKLSVLDLSYNRLDRN  289 (312)
T ss_dssp             --SEEEEEECCSSCCCSC
T ss_pred             --CCceEEECCCCCCCCC
Confidence              8999999999999987

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.61  E-value=3e-15  Score=142.97  Aligned_cols=97  Identities=15%  Similarity=0.086  Sum_probs=64.2

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      +++|++|++++|.+++++.    +..+++|++|+| .|.+..  ++. ++.+++|++|+|++|.+.+- +   . +..++
T Consensus        40 l~~L~~L~l~~~~i~~l~~----~~~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~-~---~-~~~l~  107 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIEG----VQYLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV-S---A-IAGLQ  107 (308)
T ss_dssp             HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC-G---G-GTTCT
T ss_pred             cCCcCEEEeeCCCccCchh----hhccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc-h---h-hcCCC
Confidence            5678888888888876542    566788888888 477763  333 56777788888877666432 2   1 56678


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      +|++|++++|.+....        .++.+++|+.|+++
T Consensus       108 ~L~~L~l~~n~l~~~~--------~l~~l~~L~~L~l~  137 (308)
T 1h6u_A          108 SIKTLDLTSTQITDVT--------PLAGLSNLQVLYLD  137 (308)
T ss_dssp             TCCEEECTTSCCCCCG--------GGTTCTTCCEEECC
T ss_pred             CCCEEECCCCCCCCch--------hhcCCCCCCEEECC
Confidence            8888888888774321        25666666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.61  E-value=2.9e-16  Score=159.61  Aligned_cols=95  Identities=21%  Similarity=0.128  Sum_probs=68.3

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      +++|++|+|++|.|++.  .+..++.+++|++|+| +|.+++ ..|  ++.+++|++|+|++|.+++-        ...+
T Consensus        33 ~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~l--------~~~~   99 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQI--SAADLAPFTKLELLNLSSNVLYE-TLD--LESLSTLRTLDLNNNYVQEL--------LVGP   99 (487)
T ss_dssp             GGGCCEEECCSSCCCCC--CGGGGTTCTTCCEEECTTSCCEE-EEE--CTTCTTCCEEECCSSEEEEE--------EECT
T ss_pred             CCCccEEEeeCCcCCCC--CHHHHhCCCCCCEEEeeCCCCCC-Ccc--cccCCCCCEEEecCCcCCCC--------CCCC
Confidence            34899999999999853  3456788999999999 588873 333  66788899999987766432        2358


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      +|++|++++|.+....         ...+++|+.|+++
T Consensus       100 ~L~~L~L~~N~l~~~~---------~~~l~~L~~L~L~  128 (487)
T 3oja_A          100 SIETLHAANNNISRVS---------CSRGQGKKNIYLA  128 (487)
T ss_dssp             TCCEEECCSSCCCCEE---------ECCCSSCEEEECC
T ss_pred             CcCEEECcCCcCCCCC---------ccccCCCCEEECC
Confidence            8999999999885432         1235677777765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.61  E-value=3.8e-16  Score=148.67  Aligned_cols=93  Identities=18%  Similarity=0.209  Sum_probs=77.2

Q ss_pred             CchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccc
Q psy9363         314 SGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNA  391 (421)
Q Consensus       314 ~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~  391 (421)
                      .|..+..+  ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++.++.. +..+++|+.|+|++|.+.... +..
T Consensus       167 ~~~~~~~l--~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~  242 (306)
T 2z66_A          167 LPDIFTEL--RNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQE  242 (306)
T ss_dssp             ECSCCTTC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSS
T ss_pred             chhHHhhC--cCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHH
Confidence            45667788  99999999999998 222355677889 9999999999988763 478999999999999996654 567


Q ss_pred             cCccc-cccccccccccCcc
Q psy9363         392 LGSLP-NLKYLNLASTNLRN  410 (421)
Q Consensus       392 l~~l~-~L~~L~Ls~N~l~~  410 (421)
                      +..++ +|+.|+|++|+++.
T Consensus       243 ~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          243 LQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             CCCCCTTCCEEECTTCCEEC
T ss_pred             HHhhhccCCEEEccCCCeec
Confidence            88885 99999999999974

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.59  E-value=5.6e-15  Score=138.23  Aligned_cols=100  Identities=17%  Similarity=0.042  Sum_probs=69.8

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      .++++++++|.++.++   ..+  .++|++|+| +|++.. ..+..++.+++|++|+|++|.+..-+..+   +..+++|
T Consensus        17 ~~~~l~~~~~~l~~ip---~~~--~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~---~~~l~~L   87 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIP---SNI--PADTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGI---FKELKNL   87 (270)
T ss_dssp             TTTEEECTTSCCSSCC---SCC--CTTCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTT---TSSCTTC
T ss_pred             CCCEEEccCCCCCccC---CCC--CCCCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhh---hcCCCCC
Confidence            5789999999998643   211  257999999 588883 33445677889999999877665433333   5678999


Q ss_pred             ceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363         100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus       100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      ++|++++|.+....      +..++.+++|+.|+++
T Consensus        88 ~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           88 ETLWVTDNKLQALP------IGVFDQLVNLAELRLD  117 (270)
T ss_dssp             CEEECCSSCCCCCC------TTTTTTCSSCCEEECC
T ss_pred             CEEECCCCcCCcCC------HhHcccccCCCEEECC
Confidence            99999999874332      2345566666666654

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.59  E-value=6.6e-16  Score=148.08  Aligned_cols=233  Identities=15%  Similarity=0.060  Sum_probs=155.1

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ..++.++++.+.+.  ..+......+++|++|+| +|++. ...|..++.+++|++|+|++|.+.+.++     +..+++
T Consensus        10 ~~l~i~~ls~~~l~--~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-----~~~l~~   81 (317)
T 3o53_A           10 NRYKIEKVTDSSLK--QALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD-----LESLST   81 (317)
T ss_dssp             TEEEEESCCTTTHH--HHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE-----ETTCTT
T ss_pred             CceeEeeccccchh--hhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh-----hhhcCC
Confidence            35778888888886  445566677889999999 58888 3445567788999999998887754433     667999


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF  178 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~  178 (421)
                      |++|++++|.+...           ...++|+.|+++.                                       |.+
T Consensus        82 L~~L~Ls~n~l~~l-----------~~~~~L~~L~l~~---------------------------------------n~l  111 (317)
T 3o53_A           82 LRTLDLNNNYVQEL-----------LVGPSIETLHAAN---------------------------------------NNI  111 (317)
T ss_dssp             CCEEECCSSEEEEE-----------EECTTCCEEECCS---------------------------------------SCC
T ss_pred             CCEEECcCCccccc-----------cCCCCcCEEECCC---------------------------------------Ccc
Confidence            99999999997432           1336777777652                                       211


Q ss_pred             ccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363         179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM  258 (421)
Q Consensus       179 ~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~  258 (421)
                      .+.        .           .+..+       .++..++..++..                       .+       
T Consensus       112 ~~~--------~-----------~~~~~-------~L~~L~l~~N~l~-----------------------~~-------  135 (317)
T 3o53_A          112 SRV--------S-----------CSRGQ-------GKKNIYLANNKIT-----------------------ML-------  135 (317)
T ss_dssp             SEE--------E-----------ECCCS-------SCEEEECCSSCCC-----------------------SG-------
T ss_pred             CCc--------C-----------ccccC-------CCCEEECCCCCCC-----------------------Cc-------
Confidence            100        0           00000       0122222211100                       00       


Q ss_pred             HHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCC----CCCchhh-hcCCCCCccEEEeeC
Q psy9363         259 EALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVME-QIFPQGHIHTLTLGN  333 (421)
Q Consensus       259 ~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~-~~l~~~~L~~L~Ls~  333 (421)
                                                         ....+....+|+.+++++    +..+..+ ..+  ++|++|+|++
T Consensus       136 -----------------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l--~~L~~L~L~~  178 (317)
T 3o53_A          136 -----------------------------------RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS--DTLEHLNLQY  178 (317)
T ss_dssp             -----------------------------------GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGT--TTCCEEECTT
T ss_pred             -----------------------------------cchhhhccCCCCEEECCCCCCCcccHHHHhhcc--CcCCEEECCC
Confidence                                               000000011444555554    2233333 578  9999999999


Q ss_pred             cccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         334 MGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       334 N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      |.++ ++.    ...+++ ++|+|++|+|+.+++.+..+++|+.|+|++|+|+.+  +..+..+++|+.|++++|+++
T Consensus       179 N~l~~~~~----~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l--~~~~~~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          179 NFIYDVKG----QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             SCCCEEEC----CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEE--CTTCCCCTTCCEEECTTCCCB
T ss_pred             CcCccccc----ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccch--hhHhhcCCCCCEEEccCCCcc
Confidence            9998 321    224778 999999999999987778899999999999999764  446888999999999999997

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.58  E-value=4.9e-15  Score=142.79  Aligned_cols=97  Identities=14%  Similarity=0.112  Sum_probs=80.4

Q ss_pred             CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      .+|..+..+  ++|++|+|++|.++  .++..+..+++ ++|+|++|.+. .+|..+..+++|+.|+|++|.+.. ..+.
T Consensus       197 ~lp~~l~~l--~~L~~L~L~~N~l~--~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~p~  271 (328)
T 4fcg_A          197 SLPASIANL--QNLKSLKIRNSPLS--ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPL  271 (328)
T ss_dssp             CCCGGGGGC--TTCCEEEEESSCCC--CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-BCCT
T ss_pred             cchHhhcCC--CCCCEEEccCCCCC--cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-hcch
Confidence            456678899  99999999999998  12235778899 99999998887 566667899999999999998843 3466


Q ss_pred             ccCccccccccccccccCcccCCCC
Q psy9363         391 ALGSLPNLKYLNLASTNLRNIKLNK  415 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~i~~p~  415 (421)
                      .++.+++|+.|+|++|++.+ .+|+
T Consensus       272 ~~~~l~~L~~L~L~~n~~~~-~iP~  295 (328)
T 4fcg_A          272 DIHRLTQLEKLDLRGCVNLS-RLPS  295 (328)
T ss_dssp             TGGGCTTCCEEECTTCTTCC-CCCG
T ss_pred             hhhcCCCCCEEeCCCCCchh-hccH
Confidence            78999999999999999887 5564

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.58  E-value=2.7e-15  Score=151.10  Aligned_cols=99  Identities=21%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             CCCccCCCCCCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCC
Q psy9363         303 NTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQEN  381 (421)
Q Consensus       303 ~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N  381 (421)
                      +|+.+++++..+.. +..++ ++|+.|++++|.++ +    +...+++ ++|++++|+++.+|.   .+++|+.|++++|
T Consensus       298 ~L~~L~l~~N~l~~-i~~~~-~~L~~L~Ls~N~l~-~----lp~~~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          298 NLYYLNASSNEIRS-LCDLP-PSLEELNVSNNKLI-E----LPALPPRLERLIASFNHLAEVPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             TCCEEECCSSCCSE-ECCCC-TTCCEEECCSSCCS-C----CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred             cCCEEECcCCcCCc-ccCCc-CcCCEEECCCCccc-c----ccccCCcCCEEECCCCccccccc---hhhhccEEECCCC
Confidence            56666666422222 22231 58999999999998 1    1223577 999999999999886   5789999999999


Q ss_pred             CCCCCC-cccccCcc-------------ccccccccccccCccc
Q psy9363         382 NIVDWG-EVNALGSL-------------PNLKYLNLASTNLRNI  411 (421)
Q Consensus       382 ~l~~~~-~~~~l~~l-------------~~L~~L~Ls~N~l~~i  411 (421)
                      +++.++ .+..++.+             ++|+.|++++|+++++
T Consensus       368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~  411 (454)
T 1jl5_A          368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREF  411 (454)
T ss_dssp             CCSSCCCCCTTCCEEECCC-------------------------
T ss_pred             CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCcc
Confidence            997753 34567666             8899999999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.57  E-value=3.9e-15  Score=139.49  Aligned_cols=88  Identities=14%  Similarity=0.164  Sum_probs=66.4

Q ss_pred             hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      ..+..+  ++|+.|+|++|.++ ...+..+..+++ ++|+|++|+++++++.. ..+++|+.|+|++|.+.        +
T Consensus       151 ~~~~~l--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~  219 (272)
T 3rfs_A          151 GVFDKL--TNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------C  219 (272)
T ss_dssp             TTTTTC--TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC--------C
T ss_pred             HHhccC--ccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc--------c
Confidence            345577  88999999999888 111244567788 99999999998877654 78889999999999873        3


Q ss_pred             ccccccccccccccCcccCCCC
Q psy9363         394 SLPNLKYLNLASTNLRNIKLNK  415 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i~~p~  415 (421)
                      .+++|+.|+++.|.+++ .+|.
T Consensus       220 ~~~~l~~l~~~~n~~~g-~ip~  240 (272)
T 3rfs_A          220 TCPGIRYLSEWINKHSG-VVRN  240 (272)
T ss_dssp             CTTTTHHHHHHHHHTGG-GBBC
T ss_pred             cCcHHHHHHHHHHhCCC-cccC
Confidence            46788888888888887 4443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.57  E-value=4.2e-15  Score=148.98  Aligned_cols=90  Identities=20%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      .+..+  ++|+.|+|++|.++ .+    .+..+++ ++|+|++|.|+.+++ .+..+++|+.|+|++|+|+.+. +..+.
T Consensus       180 ~~~~l--~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~  252 (440)
T 3zyj_A          180 AFEGL--SNLRYLNLAMCNLREIP----NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE-RNAFD  252 (440)
T ss_dssp             TTTTC--SSCCEEECTTSCCSSCC----CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTSST
T ss_pred             hhhcc--cccCeecCCCCcCcccc----ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEC-hhhhc
Confidence            46678  99999999999998 43    2567788 999999999998754 4588999999999999997765 66889


Q ss_pred             ccccccccccccccCcccCC
Q psy9363         394 SLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      .+++|+.|+|++|+|+.++.
T Consensus       253 ~l~~L~~L~L~~N~l~~~~~  272 (440)
T 3zyj_A          253 NLQSLVEINLAHNNLTLLPH  272 (440)
T ss_dssp             TCTTCCEEECTTSCCCCCCT
T ss_pred             CCCCCCEEECCCCCCCccCh
Confidence            99999999999999998664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.57  E-value=6.1e-15  Score=140.79  Aligned_cols=234  Identities=12%  Similarity=0.050  Sum_probs=152.2

Q ss_pred             CCcEEECCCCCCCChhhHHHHH--hcCCCCceeec-ccccCCCCCCccc--ccccccchhccccccCCcchhhHHH-HHh
Q psy9363          21 FIEDLDLSRNLLASWFAVGEIT--CQLKHLRHLNL-RIRLKSSSAPAHS--YLAEVVFFVHLGRTLCDEDFVKEGS-LLH   94 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~--~~l~~L~~L~L-~N~l~~~~~p~~~--~~~~~L~~L~L~~~~~~~~~~~~~~-ll~   94 (421)
                      .++.|++.++.++. ..+..+.  ..+++|++|+| +|++. +..|...  +.+++|++|+|++|.+.+..+.+.. .+.
T Consensus        65 ~l~~l~l~~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           65 RVRRLTVGAAQVPA-QLLVGALRVLAYSRLKELTLEDLKIT-GTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCEEEECSCCCBH-HHHHHHHHHHHHSCCCEEEEESCCCB-SCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             ceeEEEEeCCcCCH-HHHHHHHHhcccCceeEEEeeCCEec-cchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            57899999999873 3333322  23578999999 69988 4566655  7889999999998887654332221 145


Q ss_pred             hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363          95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG  174 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (421)
                      .+++|++|+|++|.+...      .+..++.+++|++||++...-..-     ..+...  .                  
T Consensus       143 ~~~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~--~------------------  191 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAF------SCEQVRAFPALTSLDLSDNPGLGE-----RGLMAA--L------------------  191 (310)
T ss_dssp             BCSCCCEEEEECCSSCCC------CTTSCCCCTTCCEEECCSCTTCHH-----HHHHTT--S------------------
T ss_pred             hccCCCEEEeeCCCcchh------hHHHhccCCCCCEEECCCCCCccc-----hhhhHH--H------------------
Confidence            799999999999998443      345677889999999875321000     000000  0                  


Q ss_pred             CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                                                       ..+.+..++..++.                                 
T Consensus       192 ---------------------------------~~~~l~~L~~L~Ls---------------------------------  205 (310)
T 4glp_A          192 ---------------------------------CPHKFPAIQNLALR---------------------------------  205 (310)
T ss_dssp             ---------------------------------CTTSSCCCCSCBCC---------------------------------
T ss_pred             ---------------------------------hhhcCCCCCEEECC---------------------------------
Confidence                                             00000000111111                                 


Q ss_pred             chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEEEeeCc
Q psy9363         255 SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNM  334 (421)
Q Consensus       255 ~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N  334 (421)
                                                      .+.+..++                 ......+..+  ++|++|+|++|
T Consensus       206 --------------------------------~N~l~~l~-----------------~~~~~l~~~l--~~L~~L~Ls~N  234 (310)
T 4glp_A          206 --------------------------------NTGMETPT-----------------GVCAALAAAG--VQPHSLDLSHN  234 (310)
T ss_dssp             --------------------------------SSCCCCHH-----------------HHHHHHHHHT--CCCSSEECTTS
T ss_pred             --------------------------------CCCCCchH-----------------HHHHHHHhcC--CCCCEEECCCC
Confidence                                            00000000                 0011135678  99999999999


Q ss_pred             ccchhhHHHHhccC---CC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         335 GYIWADILKLLANF---PV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       335 ~l~~~~i~~~~~~l---~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      .|+ ..++..+..+   ++ ++|+|++|+|+.+|..+  +++|+.|+|++|+|+.++.   +..+++|+.|+|++|+|++
T Consensus       235 ~l~-~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~l~~~~~---~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          235 SLR-ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNRLNRAPQ---PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCC-CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCCCCSCCC---TTSCCCCSCEECSSTTTSC
T ss_pred             CCC-ccchhhHHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCcCCCCch---hhhCCCccEEECcCCCCCC
Confidence            998 2111223333   67 99999999999998755  4899999999999987653   6788999999999999986

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.57  E-value=5.4e-15  Score=145.50  Aligned_cols=94  Identities=15%  Similarity=0.054  Sum_probs=61.4

Q ss_pred             hhhCCCCcEEECCCCCCCChh--hHHHHHhcCCCCceeecc-cccCC--CCCCccc-------ccccccchhccccccCC
Q psy9363          16 EQAVPFIEDLDLSRNLLASWF--AVGEITCQLKHLRHLNLR-IRLKS--SSAPAHS-------YLAEVVFFVHLGRTLCD   83 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~~L~~L~L~-N~l~~--~~~p~~~-------~~~~~L~~L~L~~~~~~   83 (421)
                      ...+++|++|+|++|.|+..+  .++..+.++++|++|+|+ |.+..  +.+|...       ..+++|++|+|++|.++
T Consensus        28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            345789999999999998432  244456688999999994 43321  2344332       45677888888776664


Q ss_pred             cc-hhhHHHHHhhCCCCceeeecCCCC
Q psy9363          84 ED-FVKEGSLLHYLPKLSSLRFTKNPI  109 (421)
Q Consensus        84 ~~-~~~~~~ll~~l~~L~~L~l~~N~l  109 (421)
                      .. ...+...+..+++|++|+|++|.+
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l  134 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNGL  134 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence            42 222333366778888888888876

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.56  E-value=1.7e-14  Score=135.84  Aligned_cols=92  Identities=22%  Similarity=0.205  Sum_probs=78.0

Q ss_pred             hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      ..+..+  ++|++|+|++|.++ .+  ...+..+++ ++|+|++|+|+.++.. +..+++|+.|+|++|.+.... +..+
T Consensus       123 ~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~  197 (285)
T 1ozn_A          123 GLFRGL--AALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH-PHAF  197 (285)
T ss_dssp             TTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTT
T ss_pred             hHhhCC--cCCCEEECCCCcccccC--HhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccC-HhHc
Confidence            345567  89999999999998 32  244677889 9999999999998875 588999999999999997754 6688


Q ss_pred             CccccccccccccccCcccC
Q psy9363         393 GSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      ..+++|+.|++++|++++++
T Consensus       198 ~~l~~L~~L~l~~n~l~~~~  217 (285)
T 1ozn_A          198 RDLGRLMTLYLFANNLSALP  217 (285)
T ss_dssp             TTCTTCCEEECCSSCCSCCC
T ss_pred             cCcccccEeeCCCCcCCcCC
Confidence            99999999999999999865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.55  E-value=6.7e-15  Score=148.01  Aligned_cols=90  Identities=22%  Similarity=0.206  Sum_probs=76.7

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      .+..+  ++|+.|+|++|.++ .+    .+..+++ ++|+|++|.|+++++. +..+++|+.|+|++|+++... +..+.
T Consensus       191 ~~~~l--~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~  263 (452)
T 3zyi_A          191 AFEGL--FNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE-RNAFD  263 (452)
T ss_dssp             TTTTC--TTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC-TTTTT
T ss_pred             hccCC--CCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC-HHHhc
Confidence            45677  99999999999998 32    2556788 9999999999987543 488999999999999997765 66789


Q ss_pred             ccccccccccccccCcccCC
Q psy9363         394 SLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      .+++|+.|+|++|+|+.++.
T Consensus       264 ~l~~L~~L~L~~N~l~~~~~  283 (452)
T 3zyi_A          264 GLASLVELNLAHNNLSSLPH  283 (452)
T ss_dssp             TCTTCCEEECCSSCCSCCCT
T ss_pred             CCCCCCEEECCCCcCCccCh
Confidence            99999999999999997654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.55  E-value=4.5e-15  Score=149.14  Aligned_cols=121  Identities=17%  Similarity=0.135  Sum_probs=84.5

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCC----CCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-h
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLK----HLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-F   86 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~----~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~   86 (421)
                      ...+++|++|||++|.|++ ..+..+...++    +|++|+| +|++...   .++..+..+++|++|+|++|.++.. +
T Consensus        52 l~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~  130 (461)
T 1z7x_W           52 LRVNPALAELNLRSNELGD-VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL  130 (461)
T ss_dssp             HHTCTTCCEEECTTCCCHH-HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred             HHhCCCcCEEeCCCCcCCh-HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence            4457999999999999984 23444555676    7999999 5887731   2355566788999999988876433 2


Q ss_pred             hhHHHH-HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363          87 VKEGSL-LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        87 ~~~~~l-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                      ..+... ....++|++|++++|.+....  ....+..+..+++|+.|+++....
T Consensus       131 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~n~i  182 (461)
T 1z7x_W          131 QLLCEGLLDPQCRLEKLQLEYCSLSAAS--CEPLASVLRAKPDFKELTVSNNDI  182 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTSCCBGGG--HHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhcCCCcceEEECCCCCCCHHH--HHHHHHHHhhCCCCCEEECcCCCc
Confidence            223221 223678999999999985432  223456778889999999986543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.54  E-value=2.9e-15  Score=150.55  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=88.7

Q ss_pred             eeeeeecCceeEeecccchhhh----hCCCccCCCCCCC---------chhhhcCCCCCccEEEeeCcccc---hhhHHH
Q psy9363         280 EVKASINAPFLELVGFDQVHEE----QNTNKLPIPNDTS---------GVMEQIFPQGHIHTLTLGNMGYI---WADILK  343 (421)
Q Consensus       280 ~~~~~~~~~~~e~~g~~~l~~~----~~L~~l~l~~~~~---------~~~~~~l~~~~L~~L~Ls~N~l~---~~~i~~  343 (421)
                      ...+.++...+...++..+...    .+|+.+++++..+         +..+..+  ++|+.|+|++|.++   ...++.
T Consensus       201 L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~  278 (461)
T 1z7x_W          201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPS--SRLRTLWIWECGITAKGCGDLCR  278 (461)
T ss_dssp             CCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTT--CCCCEEECTTSCCCHHHHHHHHH
T ss_pred             ceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCC--CCceEEECcCCCCCHHHHHHHHH
Confidence            4455666665555443333322    2888888886222         2223357  89999999999998   223566


Q ss_pred             HhccCCC-cEEEccCCcCcccCC-----CC-CCCCCCcEEECcCCCCCCCC---cccccCccccccccccccccCccc
Q psy9363         344 LLANFPV-TCLKLPSNRITTLDS-----VP-GMFSSLEELYLQENNIVDWG---EVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       344 ~~~~l~~-~~L~L~~N~l~~l~~-----~~-~~l~~L~~L~Ls~N~l~~~~---~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      .+..+++ ++|+|++|.++....     .+ ...++|+.|+|++|.++...   .+..+..+++|+.|++++|++++.
T Consensus       279 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  356 (461)
T 1z7x_W          279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA  356 (461)
T ss_dssp             HHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred             HHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence            6777889 999999999974221     11 23469999999999996532   123456779999999999999764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.54  E-value=2.3e-14  Score=139.87  Aligned_cols=124  Identities=17%  Similarity=0.061  Sum_probs=85.0

Q ss_pred             ChhHHhhhCCCCcEEECCCCCCCChh--hHHHHHhcCC-CCceeec-ccccCCCCCCcccccc-----cccchhcccccc
Q psy9363          11 THDEIEQAVPFIEDLDLSRNLLASWF--AVGEITCQLK-HLRHLNL-RIRLKSSSAPAHSYLA-----EVVFFVHLGRTL   81 (421)
Q Consensus        11 ~~~~~~~~~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~-~L~~L~L-~N~l~~~~~p~~~~~~-----~~L~~L~L~~~~   81 (421)
                      ..+++....++|++|||++|.|++.+  .+...+.+++ +|++|+| +|++.. ..+..+..+     ++|++|+|++|.
T Consensus        13 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~n~   91 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGF-KNSDELVQILAAIPANVTSLNLSGNF   91 (362)
T ss_dssp             HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGG-SCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred             HHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCH-HHHHHHHHHHhccCCCccEEECcCCc
Confidence            44556666667999999999998643  3447788888 8999999 588883 333333343     889999998887


Q ss_pred             CCcc-hhhHHHHHhhC-CCCceeeecCCCCCCccccchhHHHHHHhc-cCceeccCCcc
Q psy9363          82 CDED-FVKEGSLLHYL-PKLSSLRFTKNPILAEERVVSSREKTIARL-GGLKLLNGSAI  137 (421)
Q Consensus        82 ~~~~-~~~~~~ll~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~ln~s~i  137 (421)
                      +++. ...+...+..+ ++|++|+|++|.+....  .......+..+ ++|+.||++..
T Consensus        92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N  148 (362)
T 3goz_A           92 LSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS--SSEFKQAFSNLPASITSLNLRGN  148 (362)
T ss_dssp             GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC--HHHHHHHHTTSCTTCCEEECTTS
T ss_pred             CChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH--HHHHHHHHHhCCCceeEEEccCC
Confidence            7544 34455556667 89999999999984432  11222234443 58998888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.53  E-value=1.3e-14  Score=137.44  Aligned_cols=100  Identities=19%  Similarity=0.074  Sum_probs=63.4

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL   96 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l   96 (421)
                      .+++++++++++|.|+.+   |..+  .++|+.|+| +|++.. ..+..+..+++|++|+|++|.++.-..     ...+
T Consensus         8 ~l~~l~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l   76 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTAL---PPDL--PKDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQV-----DGTL   76 (290)
T ss_dssp             CSTTCCEEECTTSCCSSC---CSCC--CTTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEEC-----CSCC
T ss_pred             ccCCccEEECCCCCCCcC---CCCC--CCCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccC-----CCCC
Confidence            456788888888888754   3212  357888888 477773 334455677788888887766643222     2467


Q ss_pred             CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      ++|++|++++|.+...       +..++.+++|++|+++
T Consensus        77 ~~L~~L~Ls~N~l~~l-------~~~~~~l~~L~~L~l~  108 (290)
T 1p9a_G           77 PVLGTLDLSHNQLQSL-------PLLGQTLPALTVLDVS  108 (290)
T ss_dssp             TTCCEEECCSSCCSSC-------CCCTTTCTTCCEEECC
T ss_pred             CcCCEEECCCCcCCcC-------chhhccCCCCCEEECC
Confidence            8888888888877422       1234556666655553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.52  E-value=8.5e-14  Score=145.04  Aligned_cols=97  Identities=19%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             CCCccCCCCCCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCC
Q psy9363         303 NTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQEN  381 (421)
Q Consensus       303 ~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N  381 (421)
                      +|..+.+++..+......+  ++|+.|+|++|.|+  .++   ..+++ +.|+|++|+|+.+|.   .+++|+.|+|++|
T Consensus       202 ~L~~L~L~~N~l~~l~~~~--~~L~~L~Ls~N~L~--~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N  271 (622)
T 3g06_A          202 ELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLT--SLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRN  271 (622)
T ss_dssp             TCCEEECCSSCCSSCCCCC--TTCCEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS
T ss_pred             hhhEEECcCCcccccCCCC--CCCCEEEccCCccC--cCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCC
Confidence            4555555541122222345  88999999999998  112   55677 999999999999886   6789999999999


Q ss_pred             CCCCCCcccccCccccccccccccccCccc
Q psy9363         382 NIVDWGEVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       382 ~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      +|+.+  +..+..+++|+.|+|++|++++.
T Consensus       272 ~L~~l--p~~l~~l~~L~~L~L~~N~l~~~  299 (622)
T 3g06_A          272 QLTRL--PESLIHLSSETTVNLEGNPLSER  299 (622)
T ss_dssp             CCCSC--CGGGGGSCTTCEEECCSCCCCHH
T ss_pred             CCCcC--CHHHhhccccCEEEecCCCCCCc
Confidence            99865  45788999999999999999864

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.51  E-value=2.9e-15  Score=152.26  Aligned_cols=216  Identities=13%  Similarity=0.105  Sum_probs=149.8

Q ss_pred             hhHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHH
Q psy9363          12 HDEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEG   90 (421)
Q Consensus        12 ~~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~   90 (421)
                      |..+ ..+++|++|+|++|.|++...    ++.+++|++|+| +|.++.  +|    ..++|++|+|++|.+.+.+..  
T Consensus        51 ~~~~-~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l~~--l~----~~~~L~~L~L~~N~l~~~~~~--  117 (487)
T 3oja_A           51 AADL-APFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQE--LL----VGPSIETLHAANNNISRVSCS--  117 (487)
T ss_dssp             GGGG-TTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSEEEE--EE----ECTTCCEEECCSSCCCCEEEC--
T ss_pred             HHHH-hCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCcCCC--CC----CCCCcCEEECcCCcCCCCCcc--
Confidence            4444 468999999999999985432    788999999999 588883  23    237999999998877554332  


Q ss_pred             HHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhC
Q psy9363          91 SLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEAN  170 (421)
Q Consensus        91 ~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~  170 (421)
                          .+++|++|+|++|.+..      ..+..++.+++|+.|+++.                                  
T Consensus       118 ----~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~Ls~----------------------------------  153 (487)
T 3oja_A          118 ----RGQGKKNIYLANNKITM------LRDLDEGCRSRVQYLDLKL----------------------------------  153 (487)
T ss_dssp             ----CCSSCEEEECCSSCCCS------GGGBCGGGGSSEEEEECTT----------------------------------
T ss_pred             ----ccCCCCEEECCCCCCCC------CCchhhcCCCCCCEEECCC----------------------------------
Confidence                48999999999999844      3455678889999988863                                  


Q ss_pred             CCCCCcccccccCCCCceEEeecCceeEEEEecccCCCCC-cEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecC
Q psy9363         171 PRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQG-VWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRD  249 (421)
Q Consensus       171 ~~~~~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g-~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~  249 (421)
                           |.+.+.                       .|...+ ....+..                                
T Consensus       154 -----N~l~~~-----------------------~~~~l~~~l~~L~~--------------------------------  173 (487)
T 3oja_A          154 -----NEIDTV-----------------------NFAELAASSDTLEH--------------------------------  173 (487)
T ss_dssp             -----SCCCEE-----------------------EGGGGGGGTTTCCE--------------------------------
T ss_pred             -----CCCCCc-----------------------ChHHHhhhCCcccE--------------------------------
Confidence                 211100                       000000 0000000                                


Q ss_pred             ccccCchhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEE
Q psy9363         250 KLNFGSSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTL  329 (421)
Q Consensus       250 ~l~~g~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L  329 (421)
                                                       +.++.+.+                     ..++. ...+  ++|+.|
T Consensus       174 ---------------------------------L~Ls~N~l---------------------~~~~~-~~~l--~~L~~L  196 (487)
T 3oja_A          174 ---------------------------------LNLQYNFI---------------------YDVKG-QVVF--AKLKTL  196 (487)
T ss_dssp             ---------------------------------EECTTSCC---------------------CEEEC-CCCC--TTCCEE
T ss_pred             ---------------------------------EecCCCcc---------------------ccccc-cccC--CCCCEE
Confidence                                             01111100                     00111 1246  899999


Q ss_pred             EeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccc
Q psy9363         330 TLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLA  404 (421)
Q Consensus       330 ~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls  404 (421)
                      +|++|.|+ .+   ..+..+++ +.|+|++|.|+.+|..+..+++|+.|++++|.+.....+..+..++.|+.++++
T Consensus       197 ~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          197 DLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             ECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             ECCCCCCCCCC---HhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999998 32   23567788 999999999999998888899999999999999644445678889999999886

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.50  E-value=4e-14  Score=132.59  Aligned_cols=92  Identities=16%  Similarity=0.194  Sum_probs=77.0

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      .+..+  ++|++|+|++|.++ .+  +..+..+++ +.|+|++|+++.+++.. ..+++|+.|+|++|+++..+ +..++
T Consensus       128 ~~~~l--~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~  202 (272)
T 3rfs_A          128 VFDKL--TNLTYLNLAHNQLQSLP--KGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP-DGVFD  202 (272)
T ss_dssp             TTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTT
T ss_pred             HhccC--CCCCEEECCCCccCccC--HHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC-HHHHh
Confidence            34567  89999999999998 32  244677889 99999999999888754 78999999999999998765 55688


Q ss_pred             ccccccccccccccCcccCCC
Q psy9363         394 SLPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i~~p  414 (421)
                      .+++|+.|++++|++.. ..|
T Consensus       203 ~l~~L~~L~l~~N~~~~-~~~  222 (272)
T 3rfs_A          203 RLTSLQYIWLHDNPWDC-TCP  222 (272)
T ss_dssp             TCTTCCEEECCSSCBCC-CTT
T ss_pred             CCcCCCEEEccCCCccc-cCc
Confidence            99999999999999975 444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.50  E-value=1.7e-14  Score=140.16  Aligned_cols=106  Identities=14%  Similarity=-0.017  Sum_probs=81.7

Q ss_pred             hhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHh
Q psy9363          16 EQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLH   94 (421)
Q Consensus        16 ~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~   94 (421)
                      ...|+.....|+++|.++.+   |..+  .++|++|++ +|++.. ..+..++.+++|++|+|++|.+.+..+..   +.
T Consensus        27 ~~~C~~~~~c~~~~~~l~~i---P~~~--~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~   97 (353)
T 2z80_A           27 SLSCDRNGICKGSSGSLNSI---PSGL--TEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDS---FS   97 (353)
T ss_dssp             CCEECTTSEEECCSTTCSSC---CTTC--CTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTT---TT
T ss_pred             CCCCCCCeEeeCCCCCcccc---cccc--cccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhh---cC
Confidence            34588888899999999865   4322  368999999 588883 33435678999999999888775543333   66


Q ss_pred             hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          95 YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        95 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      .+++|++|++++|.+...      ....++.+++|++|+++.
T Consensus        98 ~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~  133 (353)
T 2z80_A           98 SLGSLEHLDLSYNYLSNL------SSSWFKPLSSLTFLNLLG  133 (353)
T ss_dssp             TCTTCCEEECCSSCCSSC------CHHHHTTCTTCSEEECTT
T ss_pred             CCCCCCEEECCCCcCCcC------CHhHhCCCccCCEEECCC
Confidence            799999999999998543      345688999999999974

>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}

Probab=99.49  E-value=4e-14  Score=108.69  Aligned_cols=84  Identities=31%  Similarity=0.500  Sum_probs=65.1

Q ss_pred             ccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHH
Q psy9363         181 MEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEA  260 (421)
Q Consensus       181 ~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~a  260 (421)
                      ..+.+++||.-.....+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +++|.|++++++....++.+|
T Consensus         9 ~~~~vG~rV~V~g~~~GtVryvG~~~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~G~Fv~~~~v~~~~~~~~~   86 (96)
T 2z0w_A            9 GELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKP-HGKNDGSVGGVQYFSCS-PRYGIFAPPSRVQRVTDSLDT   86 (96)
T ss_dssp             --CCTTCCCCCCCCCCEEEEEEECCSSSSSCEEEEEESSS-CSSBSSEETTEESSCCC-TTSEEEECGGGCCCTTC----
T ss_pred             ccCCCCCEEEECCCcEEEEEEeccCCCCCCeEEEEEeCCC-CCCCCCEECCEEeeecC-CCeEEEEcHHHceeccchhhh
Confidence            3477999987223479999999999999999999999999 59999999999999995 899999999999877788888


Q ss_pred             hhhhhc
Q psy9363         261 LHRKYV  266 (421)
Q Consensus       261 l~~~y~  266 (421)
                      +.+.+.
T Consensus        87 ~~e~~~   92 (96)
T 2z0w_A           87 LSEISG   92 (96)
T ss_dssp             ------
T ss_pred             hhhhcc
Confidence            776554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.47  E-value=3.9e-14  Score=142.58  Aligned_cols=97  Identities=14%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCccccccccc-------------chhccccccCCc
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVV-------------FFVHLGRTLCDE   84 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L-------------~~L~L~~~~~~~   84 (421)
                      .++|++|++++|.|+   .+|..+++|++|++|++ .|++. +.+|..++.+.+|             ++|++++|.+++
T Consensus        10 ~~~L~~L~l~~n~l~---~iP~~i~~L~~L~~L~l~~n~~~-~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNLT---EMPVEAENVKSKTEYYNAWSEWE-RNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHH-HTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred             cccchhhhcccCchh---hCChhHhcccchhhhhccCCccc-ccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence            368999999999994   78888999999999999 58888 5788888777766             666776665533


Q ss_pred             chhhHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          85 DFVKEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        85 ~~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                       ++.+      .++|++|++++|.+.+..  .        .+++|+.|+.+.
T Consensus        86 -lp~~------~~~L~~L~l~~n~l~~lp--~--------~~~~L~~L~l~~  120 (454)
T 1jl5_A           86 -LPEL------PPHLESLVASCNSLTELP--E--------LPQSLKSLLVDN  120 (454)
T ss_dssp             -CCSC------CTTCSEEECCSSCCSSCC--C--------CCTTCCEEECCS
T ss_pred             -CCCC------cCCCCEEEccCCcCCccc--c--------ccCCCcEEECCC
Confidence             2222      478999999999885532  1        136788887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.45  E-value=4.4e-13  Score=126.81  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=42.7

Q ss_pred             hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCC
Q psy9363         318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDW  386 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~  386 (421)
                      +..+  ++|+.|+|++|.++ ..   . +..+++ +.|+|++|.|+.++. +..+++|+.|++++|.+...
T Consensus       152 l~~l--~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~L~~N~i~~l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          152 LSRL--TKLDTLSLEDNQISDIV---P-LAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             GGGC--TTCSEEECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCBCGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             hccC--CCCCEEEccCCccccch---h-hcCCCccCEEECCCCcCCCChh-hccCCCCCEEECcCCcccCC
Confidence            3455  77777777777777 22   1 556677 777777777777653 56777777777777777553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.45  E-value=3.5e-13  Score=131.43  Aligned_cols=271  Identities=12%  Similarity=0.079  Sum_probs=158.8

Q ss_pred             EEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCC----ccccccc-ccchhccccccCCcc-hhhHHHHHhhC
Q psy9363          24 DLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAP----AHSYLAE-VVFFVHLGRTLCDED-FVKEGSLLHYL   96 (421)
Q Consensus        24 ~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p----~~~~~~~-~L~~L~L~~~~~~~~-~~~~~~ll~~l   96 (421)
                      .++|+.|.++  +.++..+...++|++|+| +|.+.. ..+    ..+..++ +|++|+|++|.+++. +..+..++...
T Consensus         2 ~~~ls~n~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            2 NYKLTLHPGS--NPVEEFTSIPHGVTSLDLSLNNLYS-ISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EEECCCCTTC--CHHHHHHTSCTTCCEEECTTSCGGG-SCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             ccccccccch--HHHHHHHhCCCCceEEEccCCCCCh-HHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            5789999999  678887777777999999 588883 222    2334566 899999988877554 44455545555


Q ss_pred             -CCCceeeecCCCCCCccccchhHHHHHHhc-cCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCC
Q psy9363          97 -PKLSSLRFTKNPILAEERVVSSREKTIARL-GGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVG  174 (421)
Q Consensus        97 -~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l-~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~  174 (421)
                       ++|++|+|++|.+....  .......+..+ ++|+.||++...-.+....  .....+..                   
T Consensus        79 ~~~L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--~l~~~l~~-------------------  135 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKS--SDELVKTLAAIPFTITVLDLGWNDFSSKSSS--EFKQAFSN-------------------  135 (362)
T ss_dssp             CTTCCEEECCSSCGGGSC--HHHHHHHHHTSCTTCCEEECCSSCGGGSCHH--HHHHHHTT-------------------
T ss_pred             CCCccEEECcCCcCChHH--HHHHHHHHHhCCCCccEEECcCCcCCcHHHH--HHHHHHHh-------------------
Confidence             99999999999985432  11222334455 8999999986543221000  00000000                   


Q ss_pred             CcccccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         175 DNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       175 ~n~~~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                                ....+.                          ..+++.+..                       +  ..+
T Consensus       136 ----------~~~~L~--------------------------~L~Ls~N~l-----------------------~--~~~  154 (362)
T 3goz_A          136 ----------LPASIT--------------------------SLNLRGNDL-----------------------G--IKS  154 (362)
T ss_dssp             ----------SCTTCC--------------------------EEECTTSCG-----------------------G--GSC
T ss_pred             ----------CCCcee--------------------------EEEccCCcC-----------------------C--HHH
Confidence                      000000                          011110000                       0  000


Q ss_pred             -chhHHHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCC-CccEEEee
Q psy9363         255 -SSFMEALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQG-HIHTLTLG  332 (421)
Q Consensus       255 -~~~~~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~-~L~~L~Ls  332 (421)
                       ..+.+++....            .....+.++.+.+...+...                +...+..+  + +|+.|+|+
T Consensus       155 ~~~l~~~l~~~~------------~~L~~L~Ls~n~l~~~~~~~----------------l~~~l~~~--~~~L~~L~Ls  204 (362)
T 3goz_A          155 SDELIQILAAIP------------ANVNSLNLRGNNLASKNCAE----------------LAKFLASI--PASVTSLDLS  204 (362)
T ss_dssp             HHHHHHHHHTSC------------TTCCEEECTTSCGGGSCHHH----------------HHHHHHTS--CTTCCEEECT
T ss_pred             HHHHHHHHhcCC------------ccccEeeecCCCCchhhHHH----------------HHHHHHhC--CCCCCEEECC
Confidence             01222221100            01122222222221111111                11234455  4 99999999


Q ss_pred             Ccccc---hhhHHHHhccC-CC-cEEEccCCcCcccCC-----CCCCCCCCcEEECcCCCCCCCCc------ccccCccc
Q psy9363         333 NMGYI---WADILKLLANF-PV-TCLKLPSNRITTLDS-----VPGMFSSLEELYLQENNIVDWGE------VNALGSLP  396 (421)
Q Consensus       333 ~N~l~---~~~i~~~~~~l-~~-~~L~L~~N~l~~l~~-----~~~~l~~L~~L~Ls~N~l~~~~~------~~~l~~l~  396 (421)
                      +|.|+   ...++..+... ++ ++|+|++|.|+..+.     ....+++|+.|+|++|.+.....      ...+..++
T Consensus       205 ~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~  284 (362)
T 3goz_A          205 ANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ  284 (362)
T ss_dssp             TSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC
T ss_pred             CCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC
Confidence            99998   22355555554 47 999999999987543     23678999999999999654431      12466788


Q ss_pred             cccccccccccCccc
Q psy9363         397 NLKYLNLASTNLRNI  411 (421)
Q Consensus       397 ~L~~L~Ls~N~l~~i  411 (421)
                      +|+.||+++|++...
T Consensus       285 ~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          285 KIILVDKNGKEIHPS  299 (362)
T ss_dssp             EEEEECTTSCBCCGG
T ss_pred             ceEEEecCCCcCCCc
Confidence            999999999999864

>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}

Probab=99.44  E-value=1.9e-13  Score=101.62  Aligned_cols=73  Identities=32%  Similarity=0.690  Sum_probs=64.0

Q ss_pred             cCCCCceEEeec--CceeEEEEecccCC-CCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363         182 EDDIGLRVCDSE--GHRGTIRYVGSVEG-TQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM  258 (421)
Q Consensus       182 ~~~i~~rv~~l~--~~~~~~r~~G~ip~-~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~  258 (421)
                      .+.+++||. +.  ...+++||+|+++. ..|.|+|||||++. ||++|+++|.+||+|. +++|.|++++++..+ +||
T Consensus         5 ~i~vG~Rv~-v~~~~~~G~VryvG~v~~~~~G~wvGVelDep~-GkndGsv~G~rYF~C~-~~~G~Fvr~~~v~~g-d~P   80 (84)
T 4b6m_A            5 TIHVGDRCL-CRPGDRLGSVRFVGRVASLKPGYWVGVEFDEPV-GKGDGTVKGTRVFQCQ-PNYGGFLRPDQVEVG-DFP   80 (84)
T ss_dssp             CCCTTCEEE-ETTTTEEEEEEEEEECTTSCSSEEEEEEESSSC-CSBSSEETTEESSCCC-TTSEEEECGGGEEEC-CCC
T ss_pred             CcccCCEEE-EcCCCeEEEEEEEecCCCCCCCEEEEEEECCCC-CCcCCEECCEEEEecC-CCeEEEecHHHeEEC-CcC
Confidence            477999988 53  47899999999986 57899999999986 9999999999999997 899999999999777 444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.44  E-value=1.7e-13  Score=134.80  Aligned_cols=117  Identities=13%  Similarity=-0.000  Sum_probs=83.7

Q ss_pred             hCCCCcEEECCCCCCCCh--------hhHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc
Q psy9363          18 AVPFIEDLDLSRNLLASW--------FAVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED   85 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~--------~~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~   85 (421)
                      .+++|++|+|++|.+..+        ..+...+.++++|++|+| .|++...   .+|..+..+++|++|+|++|.++..
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            589999999999866532        233444578999999999 5888832   2455667889999999998877433


Q ss_pred             -hhhHHHHHhhC---------CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          86 -FVKEGSLLHYL---------PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        86 -~~~~~~ll~~l---------~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                       +..+...+..+         ++|++|+|++|.+....  -......+..+++|+.|+++.
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~l~~~l~~~~~L~~L~L~~  196 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS--MKEWAKTFQSHRLLHTVKMVQ  196 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG--HHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH--HHHHHHHHHhCCCcCEEECcC
Confidence             22333335555         99999999999985321  111224677888999988874

>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A

Probab=99.44  E-value=1.9e-13  Score=104.96  Aligned_cols=74  Identities=36%  Similarity=0.687  Sum_probs=66.3

Q ss_pred             cCCCCceEEeec-----CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCch
Q psy9363         182 EDDIGLRVCDSE-----GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS  256 (421)
Q Consensus       182 ~~~i~~rv~~l~-----~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~  256 (421)
                      .+.+++||. +.     ...+++||+|+++...|.|+|||||++. ||++|+++|+|||+|. +++|.|++++++..+ +
T Consensus        11 ~~~vG~rv~-V~~~g~~~~~GtVryvG~~~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~G~Fvr~~~v~~g-d   86 (95)
T 1lpl_A           11 NIMVGNRCE-VTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPV-GKNDGSVAGVRYFDCD-PKYGGFVRPVDVKVG-D   86 (95)
T ss_dssp             TCCTTCEEE-ECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSC-SSBSSEETTEECSCCC-TTSEEEECGGGEEES-C
T ss_pred             cCCCCCEEE-EccCCCCceEEEEEEecccCCCCCEEEEEEccCCC-CccCCEECCEEEeEeC-CCEEEEEcHHHceEC-C
Confidence            367999998 54     4799999999999999999999999998 9999999999999995 899999999999877 5


Q ss_pred             hHH
Q psy9363         257 FME  259 (421)
Q Consensus       257 ~~~  259 (421)
                      ||+
T Consensus        87 fp~   89 (95)
T 1lpl_A           87 FPE   89 (95)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            553

>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1

Probab=99.44  E-value=2.2e-13  Score=102.51  Aligned_cols=75  Identities=35%  Similarity=0.553  Sum_probs=65.5

Q ss_pred             CCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhHHH
Q psy9363         183 DDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFMEA  260 (421)
Q Consensus       183 ~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~~a  260 (421)
                      +.+++|+. +.. ..+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +.+|.|++++++....+|.++
T Consensus         3 ~~vG~rv~-v~g~~~GtVryvG~~~~~~G~wvGVelDep-~GKndGsv~G~rYF~c~-~~~G~Fvr~~~v~~~~~~~~~   78 (86)
T 2e3i_A            3 FRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRKVQAEDE   78 (86)
T ss_dssp             CCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSS-CSSBSSEETTEESSCCS-TTCEEEECGGGEESSCCC---
T ss_pred             ccCCCEEE-ECCCcEEEEEEeeeCCCCCCcEEEEEeCCC-CCccCCEECCEEeeecC-CCeEEEEcHHHcccccchhhh
Confidence            57899998 654 69999999999999999999999998 59999999999999997 899999999999777666654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=9.2e-13  Score=126.63  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=79.0

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcC--CCCceeec-ccccCCCCCCcccccccccchhccccccCCcc-hhhHHHHHhhC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQL--KHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDED-FVKEGSLLHYL   96 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l--~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~~~ll~~l   96 (421)
                      .++.||+++|.+.     +..+..+  ++++.|++ +|.+.. ..+. ...+++|++|+|++|.+++. ++.   .+..+
T Consensus        48 ~~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n~l~~-~~~~-~~~~~~L~~L~L~~~~l~~~~~~~---~~~~~  117 (336)
T 2ast_B           48 LWQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRSFMDQ-PLAE-HFSPFRVQHMDLSNSVIEVSTLHG---ILSQC  117 (336)
T ss_dssp             TSSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTCEECS-CCCS-CCCCBCCCEEECTTCEECHHHHHH---HHTTB
T ss_pred             hheeeccccccCC-----HHHHHhhhhccceEEEcCCccccc-cchh-hccCCCCCEEEccCCCcCHHHHHH---HHhhC
Confidence            4899999999998     2334556  89999999 588883 4443 45789999999988876443 333   37889


Q ss_pred             CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      ++|++|++++|.+      .+..+..++.+++|+.|+++..
T Consensus       118 ~~L~~L~L~~~~l------~~~~~~~l~~~~~L~~L~L~~~  152 (336)
T 2ast_B          118 SKLQNLSLEGLRL------SDPIVNTLAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCCSEEECTTCBC------CHHHHHHHTTCTTCSEEECTTC
T ss_pred             CCCCEEeCcCccc------CHHHHHHHhcCCCCCEEECCCC
Confidence            9999999999997      3445667889999999999753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.43  E-value=7.4e-13  Score=126.28  Aligned_cols=99  Identities=21%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363          17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY   95 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~   95 (421)
                      ..+++|++|+|++|.|+++..    +..+++|++|+| +|++..  ++ .++.+++|++|+|++|.+.+-..     +..
T Consensus        60 ~~l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l~~n~l~~~~~-----l~~  127 (308)
T 1h6u_A           60 QYLNNLIGLELKDNQITDLAP----LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDLTSTQITDVTP-----LAG  127 (308)
T ss_dssp             GGCTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEECTTSCCCCCGG-----GTT
T ss_pred             hccCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEECCCCCCCCchh-----hcC
Confidence            468999999999999997654    788999999999 588884  34 46788999999999887754322     678


Q ss_pred             CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      +++|++|++++|.+....      +  ++.+++|+.|+++
T Consensus       128 l~~L~~L~l~~n~l~~~~------~--l~~l~~L~~L~l~  159 (308)
T 1h6u_A          128 LSNLQVLYLDLNQITNIS------P--LAGLTNLQYLSIG  159 (308)
T ss_dssp             CTTCCEEECCSSCCCCCG------G--GGGCTTCCEEECC
T ss_pred             CCCCCEEECCCCccCcCc------c--ccCCCCccEEEcc
Confidence            999999999999985432      1  6677777766664

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.43  E-value=4.4e-13  Score=126.82  Aligned_cols=90  Identities=21%  Similarity=0.158  Sum_probs=75.9

Q ss_pred             CchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccc
Q psy9363         314 SGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       314 ~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      .+..+..+  ++|++|+|++|.|+ .+  +..+..+++ +.|+|++|+|+.+|... ..+++|+.|+|++|+|+.++  .
T Consensus       116 ~~~~~~~l--~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip--~  189 (290)
T 1p9a_G          116 PLGALRGL--GELQELYLKGNELKTLP--PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--K  189 (290)
T ss_dssp             CSSTTTTC--TTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--T
T ss_pred             CHHHHcCC--CCCCEEECCCCCCCccC--hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccC--h
Confidence            34567788  99999999999998 32  245667888 99999999999998765 77999999999999998754  4


Q ss_pred             ccCccccccccccccccCc
Q psy9363         391 ALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~  409 (421)
                      .+..+++|+.|+|++|++.
T Consensus       190 ~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          190 GFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             TTTTTCCCSEEECCSCCBC
T ss_pred             hhcccccCCeEEeCCCCcc
Confidence            6677889999999999985

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=5.6e-13  Score=138.87  Aligned_cols=76  Identities=22%  Similarity=0.154  Sum_probs=64.2

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN  402 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  402 (421)
                      ++|+.|++++|.++     .+...+++ +.|+|++|.|+.+|   ..+++|+.|+|++|.|+.++.     .+++|+.|+
T Consensus       201 ~~L~~L~L~~N~l~-----~l~~~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~-----~~~~L~~L~  267 (622)
T 3g06_A          201 SELYKLWAYNNRLT-----SLPALPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM-----LPSGLLSLS  267 (622)
T ss_dssp             TTCCEEECCSSCCS-----SCCCCCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEE
T ss_pred             chhhEEECcCCccc-----ccCCCCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc-----ccccCcEEe
Confidence            89999999999998     12234577 99999999999988   456899999999999987652     578999999


Q ss_pred             cccccCcccC
Q psy9363         403 LASTNLRNIK  412 (421)
Q Consensus       403 Ls~N~l~~i~  412 (421)
                      |++|+|+.++
T Consensus       268 Ls~N~L~~lp  277 (622)
T 3g06_A          268 VYRNQLTRLP  277 (622)
T ss_dssp             CCSSCCCSCC
T ss_pred             CCCCCCCcCC
Confidence            9999999653

>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A

Probab=99.43  E-value=3.9e-13  Score=97.68  Aligned_cols=67  Identities=39%  Similarity=0.661  Sum_probs=61.1

Q ss_pred             CCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         183 DDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       183 ~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      +.+++|+. +.. ..+++||+|+++...|.|+|||||++. ||++|+++|.+||+|. +.+|+|++++++.
T Consensus         3 ~~vG~rv~-v~g~~~G~VryvG~~~~~~g~w~GVeld~p~-GkndGsv~G~rYF~c~-p~~G~Fv~~~kvs   70 (72)
T 3rdv_A            3 FRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEPI-GKNDGSVAGVRYFQCE-PLKGIFTRPSKLT   70 (72)
T ss_dssp             CCTTCEEE-ETTTEEEEEEEEECCSSSSSCEEEEEESSSC-SSBSSEETTEESCCCS-TTCEEEECGGGEE
T ss_pred             cccCCEEE-ECCCCEEEEEEeeeCCCCCceEEEEEECCCC-CccCCEECCEEeCccC-CCCEEEecHHHcc
Confidence            67899998 554 689999999999999999999999987 9999999999999997 8999999998863

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.43  E-value=1.6e-13  Score=125.72  Aligned_cols=81  Identities=22%  Similarity=0.187  Sum_probs=62.6

Q ss_pred             hhhcCCCCCcc-EEEeeCcccc-hhhHHHHhccCCC-cEEEccCCc-CcccCCCC-CCC-CCCcEEECcCCCCCCCCccc
Q psy9363         317 MEQIFPQGHIH-TLTLGNMGYI-WADILKLLANFPV-TCLKLPSNR-ITTLDSVP-GMF-SSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       317 ~~~~l~~~~L~-~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~-l~~l~~~~-~~l-~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      .+..+  ++|+ .|++++|.++ .+.  ..+.. ++ +.|+|++|+ ++.++... ..+ ++|+.|++++|+++.++.  
T Consensus       150 ~~~~l--~~L~~~L~l~~n~l~~i~~--~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~--  222 (239)
T 2xwt_C          150 AFQGL--CNETLTLKLYNNGFTSVQG--YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS--  222 (239)
T ss_dssp             TTTTT--BSSEEEEECCSCCCCEECT--TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCC--
T ss_pred             cccch--hcceeEEEcCCCCCcccCH--hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCCh--
Confidence            35567  8999 9999999998 322  23333 67 999999995 99887654 777 899999999999977652  


Q ss_pred             ccCccccccccccccc
Q psy9363         391 ALGSLPNLKYLNLAST  406 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N  406 (421)
                        ..+++|+.|+++++
T Consensus       223 --~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          223 --KGLEHLKELIARNT  236 (239)
T ss_dssp             --TTCTTCSEEECTTC
T ss_pred             --hHhccCceeeccCc
Confidence              26788888888876

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=2.4e-13  Score=130.76  Aligned_cols=107  Identities=13%  Similarity=0.062  Sum_probs=80.9

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ++++.|++++|.++..  .+. +..+++|++|+| +|.+....++.....+++|++|+|++|.+++.....   +..+++
T Consensus        70 ~~l~~L~l~~n~l~~~--~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~---l~~~~~  143 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQP--LAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT---LAKNSN  143 (336)
T ss_dssp             TTCSEEECTTCEECSC--CCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH---HTTCTT
T ss_pred             ccceEEEcCCcccccc--chh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH---HhcCCC
Confidence            7999999999998842  233 567899999999 587773226666778899999999888765443332   677999


Q ss_pred             CceeeecCC-CCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          99 LSSLRFTKN-PILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        99 L~~L~l~~N-~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      |++|++++| .+..     ...+..+..+++|+.|+++..
T Consensus       144 L~~L~L~~~~~l~~-----~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          144 LVRLNLSGCSGFSE-----FALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CSEEECTTCBSCCH-----HHHHHHHHHCTTCCEEECCCC
T ss_pred             CCEEECCCCCCCCH-----HHHHHHHhcCCCCCEEcCCCC
Confidence            999999999 5521     124566889999999998743

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.41  E-value=9.5e-14  Score=132.50  Aligned_cols=109  Identities=14%  Similarity=0.157  Sum_probs=80.1

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHH--hcCCCCceeec-ccccCCCCCCc----ccccccccchhccccccCCcchhhHHH
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEIT--CQLKHLRHLNL-RIRLKSSSAPA----HSYLAEVVFFVHLGRTLCDEDFVKEGS   91 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~--~~l~~L~~L~L-~N~l~~~~~p~----~~~~~~~L~~L~L~~~~~~~~~~~~~~   91 (421)
                      +++|++|+|++|.++  +.++..+  ..+++|++|+| +|++.. ..+.    ....+++|++|+|++|.+.+.++..  
T Consensus        90 ~~~L~~L~l~~n~l~--~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--  164 (310)
T 4glp_A           90 YSRLKELTLEDLKIT--GTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ--  164 (310)
T ss_dssp             HSCCCEEEEESCCCB--SCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS--
T ss_pred             cCceeEEEeeCCEec--cchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH--
Confidence            467999999999998  3445545  78999999999 598883 4442    2235889999999988775554443  


Q ss_pred             HHhhCCCCceeeecCCCCCCccccchhH-HHHHHhccCceeccCCc
Q psy9363          92 LLHYLPKLSSLRFTKNPILAEERVVSSR-EKTIARLGGLKLLNGSA  136 (421)
Q Consensus        92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~-~~~i~~l~~L~~ln~s~  136 (421)
                       +..+++|++|+|++|++....   +.. ...++.+++|++|+++.
T Consensus       165 -~~~l~~L~~L~Ls~N~l~~~~---~~~~~~~~~~l~~L~~L~Ls~  206 (310)
T 4glp_A          165 -VRAFPALTSLDLSDNPGLGER---GLMAALCPHKFPAIQNLALRN  206 (310)
T ss_dssp             -CCCCTTCCEEECCSCTTCHHH---HHHTTSCTTSSCCCCSCBCCS
T ss_pred             -hccCCCCCEEECCCCCCccch---hhhHHHhhhcCCCCCEEECCC
Confidence             678999999999999974321   011 12346888999998874

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.41  E-value=5.9e-13  Score=124.36  Aligned_cols=102  Identities=22%  Similarity=0.182  Sum_probs=74.9

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCc-ccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPA-HSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~-~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      ++|++|+|++|.|+..+  +..+..+++|++|+| +|+++.  +|. ....+++|++|+|++|.+..-+...   +..++
T Consensus        37 ~~l~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLP--SKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNKLQALPIGV---FDQLV  109 (270)
T ss_dssp             TTCSEEECCSSCCSCCC--TTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECCSSCCCCCCTTT---TTTCS
T ss_pred             CCCCEEECcCCCCCeeC--HHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEECCCCcCCcCCHhH---ccccc
Confidence            57999999999999653  345788999999999 588883  443 3467899999999888775544433   67899


Q ss_pred             CCceeeecCCCCCCccccchhHHHHHHhccCceeccC
Q psy9363          98 KLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNG  134 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~  134 (421)
                      +|++|++++|.+....      +..++.+++|+.|++
T Consensus       110 ~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~L  140 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLP------PRVFDSLTKLTYLSL  140 (270)
T ss_dssp             SCCEEECCSSCCCCCC------TTTTTTCTTCCEEEC
T ss_pred             CCCEEECCCCccCeeC------HHHhCcCcCCCEEEC
Confidence            9999999999984332      223445555554444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.40  E-value=9.3e-13  Score=136.42  Aligned_cols=94  Identities=12%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             hhhhcCCCCCccEEEeeCcc--cchhhHHHHhccCCC-cEEEccCCcCcc--cCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363         316 VMEQIFPQGHIHTLTLGNMG--YIWADILKLLANFPV-TCLKLPSNRITT--LDSVPGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~--l~~~~i~~~~~~l~~-~~L~L~~N~l~~--l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      ..+..+  ++|+.|+|++|.  ++...+..+...+++ ++|+|++|.++.  ++..+..+++|+.|+|++|.+++.....
T Consensus       430 ~~~~~~--~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  507 (592)
T 3ogk_B          430 SLLIGC--KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA  507 (592)
T ss_dssp             HHHHHC--TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred             HHHHhC--CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence            346667  888888887433  552233344555777 888888888863  3332366788888888888874332222


Q ss_pred             ccCccccccccccccccCccc
Q psy9363         391 ALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      .+..+++|+.|+|++|++++.
T Consensus       508 ~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          508 AVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHhcCccCeeECcCCcCCHH
Confidence            344678888888888887764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=2.2e-13  Score=118.89  Aligned_cols=127  Identities=17%  Similarity=0.160  Sum_probs=101.3

Q ss_pred             HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcc-cccccccchhccccccCCcchhhHHH
Q psy9363          14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAH-SYLAEVVFFVHLGRTLCDEDFVKEGS   91 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~-~~~~~~L~~L~L~~~~~~~~~~~~~~   91 (421)
                      .+...+++|++|||++|.|+++    ..++.+++|++|+| +|+++.  +|.. .+.+++|++|+|++|.+ ..++.+..
T Consensus        36 ~~~~~~~~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~  108 (176)
T 1a9n_A           36 NLGATLDQFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELILTNNSL-VELGDLDP  108 (176)
T ss_dssp             CGGGGTTCCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEECCSCCC-CCGGGGGG
T ss_pred             HhhhcCCCCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCEEECCCCcC-CcchhhHh
Confidence            3566667999999999999965    35678999999999 598883  3433 37889999999988877 34444333


Q ss_pred             HHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHH
Q psy9363          92 LLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIK  151 (421)
Q Consensus        92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~  151 (421)
                       +..+++|++|++++|++...   ..++..+++.+++|++||++.++..+|..++..|-.
T Consensus       109 -l~~l~~L~~L~l~~N~i~~~---~~~~~~~~~~l~~L~~Ld~~~n~~~~~~~~~~~~~~  164 (176)
T 1a9n_A          109 -LASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKG  164 (176)
T ss_dssp             -GGGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTTC-
T ss_pred             -hhcCCCCCEEEecCCCCCCc---HhHHHHHHHHCCccceeCCCcCCHHHHHHHHHHHhc
Confidence             77899999999999998644   456677899999999999999999999887765543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.39  E-value=1.3e-12  Score=135.78  Aligned_cols=95  Identities=17%  Similarity=0.068  Sum_probs=60.9

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      .+..++|+.+.+++....    ..|++|+.|++ +|.+..  ++ .+..+++|+.|+|++|.+.+..+     +..+++|
T Consensus        22 ~l~~l~l~~~~i~~~~~~----~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L   89 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVTQ----NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP-----LTNLKNL   89 (605)
T ss_dssp             HHHHHHTTCSCTTSEECH----HHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG-----GGGCTTC
T ss_pred             HHHHHhccCCCcccccch----hcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh-----hccCCCC
Confidence            356677777777754333    34677888888 466663  33 35677888888887776644332     5568888


Q ss_pred             ceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363         100 SSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus       100 ~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      +.|+|++|.+...        ..++.+++|+.|+++
T Consensus        90 ~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls  117 (605)
T 1m9s_A           90 GWLFLDENKIKDL--------SSLKDLKKLKSLSLE  117 (605)
T ss_dssp             CEEECCSSCCCCC--------TTSTTCTTCCEEECT
T ss_pred             CEEECcCCCCCCC--------hhhccCCCCCEEEec
Confidence            8888888887432        135566666666554

>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.38  E-value=1.2e-12  Score=101.98  Aligned_cols=72  Identities=24%  Similarity=0.404  Sum_probs=63.9

Q ss_pred             cCCCCceEEeec---CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCc
Q psy9363         182 EDDIGLRVCDSE---GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGS  255 (421)
Q Consensus       182 ~~~i~~rv~~l~---~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~  255 (421)
                      .+.+++||. +.   ...+++||+|+++...|.|+||||||..+||++|+++|++||+|. +++|.|++++++....
T Consensus        17 ~l~VG~RV~-V~~~~~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~-p~~G~FVr~~~v~~~~   91 (104)
T 1ixd_A           17 GLEVGSLAE-VKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA-LKKALFVKLKSCRPDS   91 (104)
T ss_dssp             CCCTTSEEE-ECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCC-TTCBEEEEGGGEEECC
T ss_pred             ccccCCEEE-ECcCCCcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecC-CCcEEEEcHHHceecc
Confidence            378999998 54   478999999999999999999999666679999999999999997 8999999999986553

>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A

Probab=99.37  E-value=1.1e-12  Score=99.41  Aligned_cols=69  Identities=32%  Similarity=0.594  Sum_probs=62.9

Q ss_pred             CCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         183 DDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       183 ~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      +.+++|+. +.. ..+++||+|+++...|.|+|||||+.. ||++|+++|.+||+|. +++|.|++++++..+
T Consensus         2 l~vG~rV~-V~g~~~GtVryvG~~~~~~G~wvGVelDep~-GKndGsv~G~rYF~C~-p~~G~Fv~~~kv~~~   71 (90)
T 2e3h_A            2 LKIGDRVL-VGGTKAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI   71 (90)
T ss_dssp             CCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEESCCCC-TTCEEEEEGGGEEET
T ss_pred             CcCCCEEE-ECCCCEEEEEEeccCCCCCCeEEEEEECCCC-CCCCCEECCEEeeecC-CCcEEEEcHHHeEEC
Confidence            56899998 654 689999999999999999999999986 9999999999999996 899999999998655

>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A

Probab=99.36  E-value=2.4e-12  Score=98.45  Aligned_cols=70  Identities=33%  Similarity=0.562  Sum_probs=63.3

Q ss_pred             cCCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         182 EDDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       182 ~~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      .+.+++||. +. ...+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +++|.|++++++...
T Consensus        18 ~~~vG~rV~-V~g~~~GtVryvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~G~Fvr~~kv~~~   88 (95)
T 2cp2_A           18 DFVVGERVW-VNGVKPGVVQYLGETQFAPGQWAGVVLDDP-VGKNDGAVGGVRYFECP-ALQGIFTRPSKLTRQ   88 (95)
T ss_dssp             SCCTTCEEE-GGGSCEEEEEEEEECSSSCSEEEEEEESSS-CSSBBSEETTEECCCCC-TTTEEEECGGGCCSS
T ss_pred             cCcCCCEEE-ECCceEEEEEEecccCCCCCEEEEEEecCC-CCccCCEECCEEecccC-CCeEEEEcHHHCccC
Confidence            378999998 65 479999999999999999999999999 69999999999999997 899999999988543

>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.36  E-value=8.5e-13  Score=104.34  Aligned_cols=73  Identities=33%  Similarity=0.596  Sum_probs=65.3

Q ss_pred             cCCCCceEEeec-----CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCch
Q psy9363         182 EDDIGLRVCDSE-----GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS  256 (421)
Q Consensus       182 ~~~i~~rv~~l~-----~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~  256 (421)
                      .+.+++||. +.     ...+++||+|+++...|.|+|||||++. ||++|+++|++||+|. +++|.|++++++..| +
T Consensus        32 ~~~VG~RV~-V~~~g~~~~~GtVryvG~v~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~g-d  107 (113)
T 1whg_A           32 AISVGSRCE-VRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPL-GKNDGSVNGKRYFECQ-AKYGAFVKPSAVTVG-D  107 (113)
T ss_dssp             TSCSSCEEE-ECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSC-CSBBSEETTEECSCCC-TTTEEEECGGGEEEE-E
T ss_pred             cCCCCCEEE-EecCCCcceEEEEEEecccCCCCCEEEEEEecCCC-CccCCEECCEEEeeeC-CCeEEEECHHHeEEC-C
Confidence            477999998 53     3899999999999999999999999998 9999999999999997 899999999998766 4


Q ss_pred             hH
Q psy9363         257 FM  258 (421)
Q Consensus       257 ~~  258 (421)
                      ||
T Consensus       108 fp  109 (113)
T 1whg_A          108 SG  109 (113)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.35  E-value=1.7e-12  Score=99.31  Aligned_cols=71  Identities=35%  Similarity=0.677  Sum_probs=64.0

Q ss_pred             ccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         179 QVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       179 ~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ....+.+++||. +.. ..+++||+|+++...|.|+|||||++. ||++|+++|++||+|. +.+|.|++++++.
T Consensus        13 ~~~~~~vG~RV~-V~g~~~GtVryvG~v~~~~G~wvGVelDep~-GKnDGsv~G~rYF~C~-~~~G~Fv~~~kv~   84 (95)
T 2cp0_A           13 SALGLRLGDRVL-LDGQKTGTLRFCGTTEFASGQWVGVELDEPE-GKNDGSVGGVRYFICP-PKQGLFASVSKIS   84 (95)
T ss_dssp             HHHTCCTTCEEE-ETTTEEEEEEEEECCSSSCSCEEEEEESSSC-CSBCSEETTEECCCCS-SSCEEEECGGGEE
T ss_pred             cccCCCCCCEEE-ECCCCeEEEEEecccCCCCCcEEEEEecCCC-CcCCCEECCEEeeecC-CCcEEEEcHHHee
Confidence            344588999998 654 699999999999999999999999997 9999999999999997 8999999999874

>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.34  E-value=2.5e-12  Score=96.28  Aligned_cols=68  Identities=34%  Similarity=0.617  Sum_probs=62.1

Q ss_pred             cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      .+.+++|+. +.. ..+++||+|+++...+.|+|||||++. ||++|+++|++||+|. +.+|.|++++++.
T Consensus         7 ~~~vG~rv~-v~g~~~GtVryvG~~~~~~G~wvGVelDep~-GkndGsv~G~rYF~c~-~~~G~Fv~~~kv~   75 (84)
T 2cp3_A            7 GLRLGDRVL-VGGTKTGVVRYVGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCP-PKFGLFAPIHKVI   75 (84)
T ss_dssp             SCCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEESSCCC-TTTEEEEEGGGEE
T ss_pred             ccccCCEEE-ECCCCeEEEEEeccCCCCCCeEEEEEeCCCC-CcCCCEECCEEeeecC-CCeEEEEcHHHeE
Confidence            478999998 654 689999999999999999999999986 9999999999999996 8999999999874

>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.34  E-value=3.1e-12  Score=98.97  Aligned_cols=74  Identities=35%  Similarity=0.642  Sum_probs=64.8

Q ss_pred             ccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363         181 MEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF  257 (421)
Q Consensus       181 ~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~  257 (421)
                      ..+.+++||. +.. ..+++||+|+++...|.|+|||||+.. ||++|+++|++||+|. +++|.|++++++..-.++
T Consensus        24 ~~~~VG~RV~-V~g~~~GtVryvG~v~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~~~~d~   98 (102)
T 1whh_A           24 AKAEVGDQVL-VAGQKQGIVRFYGKTDFAPGYWYGIELDQPT-GKHDGSVFGVRYFTCA-PRHGVFAPASRIQRIGSG   98 (102)
T ss_dssp             CSSCTTSEEE-ETTTEEEEEEEEEECSSSSSEEEEEECSSSC-CSSSSEETTEECSCCC-TTTEEEECGGGEEECCSC
T ss_pred             ccCcCCCEEE-ECCCcEEEEEEeeecCCCCCeEEEEEeCCCC-CcCCCEECCEEeeecC-CCcEEEecHHHeEECCCC
Confidence            4488999998 654 699999999999999999999999984 9999999999999996 899999999988533333

>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.34  E-value=2.2e-12  Score=99.41  Aligned_cols=70  Identities=27%  Similarity=0.516  Sum_probs=61.9

Q ss_pred             cCCCCceEEeec------CceeEEEEecccC---CCCCcEEEEEecCCC--CCCCCCeeCCEEeEecCCCCceeEEecCc
Q psy9363         182 EDDIGLRVCDSE------GHRGTIRYVGSVE---GTQGVWYGIDWDSET--RGKHDGSHNGVKYFWTHSTTSGSFMRRDK  250 (421)
Q Consensus       182 ~~~i~~rv~~l~------~~~~~~r~~G~ip---~~~g~~~gle~d~~~--~g~~~G~~~g~~~f~~~~~~~gsf~~~~~  250 (421)
                      .+.+++||. +.      ...+++||+|+++   ...|.|+|||||+..  +||++|+++|+|||+|. +++|.|+++++
T Consensus         7 ~~~VG~rV~-V~~~~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~-~~~G~Fv~~~~   84 (95)
T 1whl_A            7 GIDVGCPVK-VQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCD-EDCGVFVALDK   84 (95)
T ss_dssp             CCCSSCEEE-EECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCC-TTTEEEECGGG
T ss_pred             cCcCCCEEE-EecCCCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecC-CCeEEEEcHHH
Confidence            378999998 52      3689999999998   678999999999996  79999999999999995 89999999998


Q ss_pred             ccc
Q psy9363         251 LNF  253 (421)
Q Consensus       251 l~~  253 (421)
                      +..
T Consensus        85 v~~   87 (95)
T 1whl_A           85 LEL   87 (95)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            753

>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P

Probab=99.34  E-value=2.8e-12  Score=98.05  Aligned_cols=70  Identities=37%  Similarity=0.662  Sum_probs=62.7

Q ss_pred             ccCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcccc
Q psy9363         181 MEDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF  253 (421)
Q Consensus       181 ~~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~  253 (421)
                      ..+.+++|+. +.  ...+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +++|.|++++++..
T Consensus        11 ~~~~vG~rv~-v~~~~~~GtVryvG~~~~~~G~wvGVelDep-~GKndGsv~G~rYF~C~-~~~G~Fvr~~~v~~   82 (93)
T 1txq_A           11 RPLRVGSRVE-VIGKGHRGTVAYVGATLFATGKWVGVILDEA-KGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQV   82 (93)
T ss_dssp             CCCCTTCEEE-ETTTCCEEEEEEEECCSSSSSCEEEEEESSS-CSSBSSEETTEESCCCC-TTCEEEECGGGEEE
T ss_pred             ccCCCCCEEE-ECCCCeEEEEEEeeecCCCCCcEEEEEeCCC-CCCCCCEECCEEeeecC-CCeEEEEcHHHeEE
Confidence            3478999998 53  479999999999999999999999997 59999999999999996 89999999998753

>1whk_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.33  E-value=1.6e-12  Score=98.83  Aligned_cols=68  Identities=28%  Similarity=0.581  Sum_probs=62.4

Q ss_pred             cCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         182 EDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       182 ~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      .+.+++|+. +.  ...+++||+|+++...|.|+|||||++ +||++|+++|++||+|. +.+|.|++++++.
T Consensus        12 ~~~vG~rV~-V~~~~~~GtVryvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-~~~G~Fvr~~~v~   81 (91)
T 1whk_A           12 KLHEGSQVL-LTSSNEMATVRYVGPTDFASGIWLGLELRSA-KGKNDGAVGDKRYFTCK-PNYGVLVRPSRVT   81 (91)
T ss_dssp             CCCSSCEEE-ESSSCCEEEECCCEECSSSSSEEEEEECSSS-CSSCCSEETTEECCCCS-TTCCCEECGGGEE
T ss_pred             cccCCCEEE-ECCCCeEEEEEEeeeCCCCCCeEEEEEeCCC-CCcCCCEECCEEEeecC-CCeEEEEchHHcE
Confidence            478999998 63  589999999999999999999999998 69999999999999996 8999999999874

>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1

Probab=99.32  E-value=3.8e-12  Score=98.46  Aligned_cols=70  Identities=34%  Similarity=0.600  Sum_probs=63.1

Q ss_pred             cccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         180 VMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       180 ~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ...+.+++||. +.. ..+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +.+|.|++++++.
T Consensus        22 ~~~~~vG~RV~-V~g~~~GtVryvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~G~Fv~~~kv~   92 (102)
T 1whj_A           22 SLGLKLGDRVV-IAGQKVGTLRFCGTTEFASGQWAGIELDEP-EGKNNGSVGRVQYFKCA-PKYGIFAPLSKIS   92 (102)
T ss_dssp             HHTCCTTCEEE-ETTTEEEEEEEEEECSSSCSEEEEEEESSS-CCSBSSEETTEECCCCC-TTTEEEEEGGGEE
T ss_pred             hhcCcCCCEEE-ECCCCEEEEEEeeecCCCCCeEEEEEeCCC-CCccCCEECCEEecccC-CCeEEEEeHHHcc
Confidence            34488999998 654 69999999999999999999999998 49999999999999996 8999999999874

>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.32  E-value=3.8e-12  Score=106.83  Aligned_cols=77  Identities=31%  Similarity=0.551  Sum_probs=67.6

Q ss_pred             ccccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363         179 QVMEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF  257 (421)
Q Consensus       179 ~~~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~  257 (421)
                      .+..+.+|+||. +.. ..+++||+|+++...|.|+|||||+.. ||++|+++|++||+|. +++|.|+++.++..+ +|
T Consensus        35 ~~~~l~VG~RV~-V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~-GKnDGsv~G~rYF~C~-p~~GiFVr~~kV~~~-df  110 (172)
T 2cp6_A           35 GERELKIGDRVL-VGGTKAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKVTKI-GF  110 (172)
T ss_dssp             CSSCCCSSCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEECCCCC-TTTEEEEEGGGCEEC-CC
T ss_pred             CCccCccCCEEE-ECCCceEEEEEeCcCCCCCCcEEEEEecCCC-CccCCEECCEEeeeeC-CCeEEEechHHeEEC-Cc
Confidence            345588999998 654 899999999999999999999999986 9999999999999996 899999999998765 44


Q ss_pred             HH
Q psy9363         258 ME  259 (421)
Q Consensus       258 ~~  259 (421)
                      ++
T Consensus       111 P~  112 (172)
T 2cp6_A          111 PS  112 (172)
T ss_dssp             SS
T ss_pred             CC
Confidence            43

>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.31  E-value=3.5e-12  Score=101.65  Aligned_cols=68  Identities=28%  Similarity=0.594  Sum_probs=62.9

Q ss_pred             cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      .+.+++||. +.. ..+++||+|+++...|.|+|||||++. ||++|+++|++||+|. +++|.|++++++.
T Consensus        31 ~l~VG~RV~-V~g~~~GtVRyvG~v~~~~G~WvGVELDeP~-GKnDGsv~G~rYF~C~-p~~GiFVr~~kv~   99 (122)
T 2coz_A           31 DFHIGDRVL-IGNVQPGILRFKGETSFAKGFWAGVELDKPE-GNNNGTYDGIAYFECK-EKHGIFAPPQKIS   99 (122)
T ss_dssp             SCCTTEEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSTT-SSBCSEETTEECCCCC-SSCEEEECGGGEE
T ss_pred             cCcCCCEEE-ECCCcEEEEEEecccCCCCCeEEEEEeCCCC-CccCCEECCEEeeecC-CCcEEEecHHHCc
Confidence            478999998 654 899999999999999999999999998 9999999999999997 8899999999874

>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.30  E-value=5.7e-12  Score=99.18  Aligned_cols=69  Identities=38%  Similarity=0.671  Sum_probs=62.3

Q ss_pred             ccCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         181 MEDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       181 ~~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ..+.+++||. +.  ...+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +++|.|++++++.
T Consensus        32 ~~l~VG~RV~-V~~~g~~GtVRyvG~v~~~~G~wvGVElDep-~GKnDGsv~G~rYF~C~-p~~GiFVr~~~v~  102 (112)
T 2coy_A           32 RPLRVGSRVE-VIGKGHRGTVAYVGATLFATGKWVGVILDEA-KGKNDGTVQGRKYFTCD-EGHGIFVRQSQIQ  102 (112)
T ss_dssp             CCCCTTCEEE-ETTTCCEEEEEEEECCSSSSSCEEEEEESSS-CSSBSSEETTEECSCCC-TTTEEEECGGGEE
T ss_pred             ccCCCCCEEE-ECCCCeEEEEEEeeecCCCCCcEEEEEECCC-CCCCCCEECCEEeeecC-CCeEEEEchHHeE
Confidence            3478999998 53  479999999999999999999999997 59999999999999996 8999999999875

>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.29  E-value=6.1e-12  Score=102.44  Aligned_cols=70  Identities=37%  Similarity=0.617  Sum_probs=63.4

Q ss_pred             cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      .+.+++||. +.. ..+++||+|+++...|.|+|||||+. +||++|+++|++||+|. +.+|.|++++++..+
T Consensus        64 ~l~VG~RV~-V~G~~~GtVRyvG~v~~~~G~WvGVELDeP-~GKnDGsv~G~rYF~C~-p~~GiFVrp~kv~~~  134 (141)
T 2cp5_A           64 DFRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEP-IGKNDGSVAGVRYFQCE-PLKGIFTRPSKLTRK  134 (141)
T ss_dssp             CCCTTCEEE-ETTSCEEEEEEEEECSSSSSEEEEEEESSS-CCSCBSEETTEESSCCC-TTTEEEECGGGEESS
T ss_pred             cCcCCCEEE-ECCCcEEEEEEeeecCCCCCcEEEEEeCCC-CCccCCEECCEEeeecC-CCcEEEechHHeeec
Confidence            378999998 654 69999999999999999999999998 59999999999999996 899999999988544

>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=99.28  E-value=8.3e-12  Score=96.19  Aligned_cols=67  Identities=31%  Similarity=0.587  Sum_probs=62.0

Q ss_pred             CCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         183 DDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       183 ~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      +.+++||. +. ...+++||+|+++...+.|+|||||+.. ||++|+++|++||+|. +++|.|++++++.
T Consensus        24 l~vG~rV~-V~g~~~GtVryvG~~~~~~G~wvGVElDep~-GKnDGsv~G~rYF~C~-p~~GiFvr~~~v~   91 (100)
T 2cow_A           24 LREGEFVT-VGAHKTGVVRYVGPADFQEGTWVGVELDLPS-GKNDGSIGGKQYFRCN-PGYGLLVRPSRVR   91 (100)
T ss_dssp             CCTTCEEE-CSSSCEEEEEEEECCSSSSSCEEEEECSSSC-CSCSSEETTEECCCSC-TTCCEEECGGGCE
T ss_pred             ccCCCEEE-ECCCcEEEEEEeeeCCCCCCeEEEEEeCCCC-CcCCCEECCEEeeecC-CCeEEEecHHHee
Confidence            78999998 65 4899999999999999999999999995 9999999999999996 8999999999874

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=1.2e-11  Score=127.43  Aligned_cols=70  Identities=11%  Similarity=0.059  Sum_probs=37.9

Q ss_pred             CCccEEEeeCcccc-hhhHHH-HhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363         324 GHIHTLTLGNMGYI-WADILK-LLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS  394 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~-~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  394 (421)
                      ++|+.|+|++|.|+ ++.+.. .....+. +.|+|++|+|+.||..+..+++|+.|+|++|.|+. ..+..++.
T Consensus       180 ~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~-~~p~~l~~  252 (571)
T 3cvr_A          180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS-RIRESLSQ  252 (571)
T ss_dssp             TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH-HHHHHHHH
T ss_pred             CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC-cCHHHHHH
Confidence            46677777777766 322111 1111233 56777777777776655557777777777777743 22334443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=2.7e-11  Score=111.78  Aligned_cols=88  Identities=16%  Similarity=0.235  Sum_probs=39.4

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      .+..+  ++|++|+|++|.|+ .+.  ..+..+++ ++|+|++|+|+.+++. +..+++|+.|+|++|+++..+ +..+.
T Consensus       102 ~~~~l--~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~  176 (251)
T 3m19_A          102 VFDHL--TQLDKLYLGGNQLKSLPS--GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFD  176 (251)
T ss_dssp             TTTTC--TTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTT
T ss_pred             Hhccc--CCCCEEEcCCCcCCCcCh--hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC-HHHHh
Confidence            34444  45555555555444 111  22333444 4555555555444432 244445555555555554332 23344


Q ss_pred             ccccccccccccccCc
Q psy9363         394 SLPNLKYLNLASTNLR  409 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~  409 (421)
                      .+++|+.|+|++|+++
T Consensus       177 ~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          177 RLGKLQTITLFGNQFD  192 (251)
T ss_dssp             TCTTCCEEECCSCCBC
T ss_pred             CCCCCCEEEeeCCcee
Confidence            4455555555555443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.24  E-value=1.1e-11  Score=128.25  Aligned_cols=113  Identities=16%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             HHhhhCCCCcEEECCCC-CCCChhhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccccccCCcchhh
Q psy9363          14 EIEQAVPFIEDLDLSRN-LLASWFAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLGRTLCDEDFVK   88 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N-~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~~~~~~~~~~~   88 (421)
                      .+.+.|++|++|+|++| .+++ ..++.++.++++|++|+| .|.++...   ++.....+++|++|+|+.|...-....
T Consensus       124 ~l~~~~~~L~~L~L~~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~  202 (594)
T 2p1m_B          124 LIAKSFKNFKVLVLSSCEGFST-DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA  202 (594)
T ss_dssp             HHHHHCTTCCEEEEESCEEEEH-HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred             HHHHhCCCCcEEeCCCcCCCCH-HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence            33334555555555555 3332 224444445555555555 34443211   111222445666666654431111223


Q ss_pred             HHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceecc
Q psy9363          89 EGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN  133 (421)
Q Consensus        89 ~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln  133 (421)
                      +..+...+++|++|++++|.-      -...+..+.++++|+.|+
T Consensus       203 l~~l~~~~~~L~~L~L~~~~~------~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          203 LERLVTRCPNLKSLKLNRAVP------LEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             HHHHHHHCTTCCEEECCTTSC------HHHHHHHHHHCTTCSEEE
T ss_pred             HHHHHHhCCCCcEEecCCCCc------HHHHHHHHhcCCcceEcc
Confidence            333345677777777777731      011334455555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.24  E-value=2.4e-12  Score=133.31  Aligned_cols=122  Identities=11%  Similarity=0.041  Sum_probs=87.0

Q ss_pred             hHHhhhCCCCcEEECCCCCCCChhhHHHHHhc-CCC-Cceeec-ccc-cCCCCCCcccccccccchhccccccCCcc-hh
Q psy9363          13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQ-LKH-LRHLNL-RIR-LKSSSAPAHSYLAEVVFFVHLGRTLCDED-FV   87 (421)
Q Consensus        13 ~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~-l~~-L~~L~L-~N~-l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-~~   87 (421)
                      ..+...|++|++|+|++|.++  +..+..+.. +++ |++|+| .+. +....++.....+++|++|+|++|.+++. ..
T Consensus       105 ~~l~~~~~~L~~L~L~~~~i~--~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~  182 (592)
T 3ogk_B          105 TEISNNLRQLKSVHFRRMIVS--DLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGK  182 (592)
T ss_dssp             HHHHHHCTTCCEEEEESCBCC--HHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSH
T ss_pred             HHHHhhCCCCCeEEeeccEec--HHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchh
Confidence            455668999999999999998  444555555 455 999999 454 33112333344789999999988766443 12


Q ss_pred             hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      .+..++..+++|++|++++|.+....  ....+..+.++++|+.|+++...
T Consensus       183 ~l~~~~~~~~~L~~L~L~~n~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          183 WLHELAQHNTSLEVLNFYMTEFAKIS--PKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HHHHHHHHCCCCCEEECTTCCCSSCC--HHHHHHHHHHCTTCCEEECSSCB
T ss_pred             HHHHHHhcCCCccEEEeeccCCCccC--HHHHHHHHhhCCCCcEEeccCcc
Confidence            24445778999999999999985322  23455678899999999998643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.23  E-value=3.8e-12  Score=109.97  Aligned_cols=119  Identities=22%  Similarity=0.114  Sum_probs=88.8

Q ss_pred             hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363          17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY   95 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~   95 (421)
                      ..+++|++|+|++|.|+++    ..+..+++|++|+| +|++.. .+|...+.+++|++|+|++|.+++-. .+.. +..
T Consensus        46 ~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~-l~~  118 (168)
T 2ell_A           46 AEFVNLEFLSLINVGLISV----SNLPKLPKLKKLELSENRIFG-GLDMLAEKLPNLTHLNLSGNKLKDIS-TLEP-LKK  118 (168)
T ss_dssp             GGGGGCCEEEEESSCCCCC----SSCCCCSSCCEEEEESCCCCS-CCCHHHHHCTTCCEEECBSSSCCSSG-GGGG-GSS
T ss_pred             HhCCCCCEEeCcCCCCCCh----hhhccCCCCCEEECcCCcCch-HHHHHHhhCCCCCEEeccCCccCcch-hHHH-Hhc
Confidence            4578899999999988865    45677889999999 588883 46666666889999999877764422 1112 677


Q ss_pred             CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhcc
Q psy9363          96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGS  145 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~a  145 (421)
                      +++|++|++++|++...   ..++...++.+++|+.||++.+...++.++
T Consensus       119 l~~L~~L~l~~N~l~~~---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          119 LECLKSLDLFNCEVTNL---NDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CSCCCEEECCSSGGGTS---TTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             CCCCCEEEeeCCcCcch---HHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            89999999999998544   245556888999999999988776666444

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.20  E-value=3.8e-11  Score=109.36  Aligned_cols=123  Identities=14%  Similarity=0.083  Sum_probs=87.1

Q ss_pred             eeecCceeEeecccchhhhhCCCccCCCC---CCC-chhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEcc
Q psy9363         283 ASINAPFLELVGFDQVHEEQNTNKLPIPN---DTS-GVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLP  356 (421)
Q Consensus       283 ~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~-~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~  356 (421)
                      +.++.+.+..+....+....+|+.+.|++   ..+ +..+..+  ++|+.|+|++|.|+ .+  +..+..+++ ++|+|+
T Consensus        45 L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l--~~L~~L~Ls~N~l~~l~--~~~~~~l~~L~~L~Ls  120 (229)
T 3e6j_A           45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSL--TQLTVLDLGTNQLTVLP--SAVFDRLVHLKELFMC  120 (229)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECC
T ss_pred             EEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccC--CCcCEEECCCCcCCccC--hhHhCcchhhCeEecc
Confidence            44444444433323232323666666665   333 3456788  88999999999888 22  244567788 899999


Q ss_pred             CCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       357 ~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      +|+|+.+|..+..+++|+.|+|++|+|+.++ ...+..+++|+.|+|++|++..
T Consensus       121 ~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          121 CNKLTELPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             SSCCCSCCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCcccccCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCccC
Confidence            9999988877788889999999999987765 4567888899999999998763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.19  E-value=3.7e-11  Score=108.70  Aligned_cols=123  Identities=14%  Similarity=0.154  Sum_probs=81.2

Q ss_pred             eeeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEc
Q psy9363         282 KASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKL  355 (421)
Q Consensus       282 ~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L  355 (421)
                      .+.++.+.+..+....+....+|+.+++++    +..|..+..+  ++|++|+|++|.|+ .+.  ..+..+++ ++|+|
T Consensus        36 ~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l--~~L~~L~Ls~N~l~~l~~--~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           36 EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL--RSLNSLVLYGNKITELPK--SLFEGLFSLQLLLL  111 (220)
T ss_dssp             EEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC--SSCCEEECCSSCCCCCCT--TTTTTCTTCCEEEC
T ss_pred             EEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC--cCCCEEECCCCcCCccCH--hHccCCCCCCEEEC
Confidence            344445444444333333333666666665    3335667777  88888888888887 322  34566777 88888


Q ss_pred             cCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         356 PSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       356 ~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      ++|+|+.+++. +..+++|+.|+|++|+|+.++ +..+..+++|+.|+|++|++.
T Consensus       112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEeCCCCcC
Confidence            88888876543 467788888888888887655 456777888888888888774

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.18  E-value=2.4e-11  Score=102.69  Aligned_cols=109  Identities=19%  Similarity=0.130  Sum_probs=65.0

Q ss_pred             hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363          17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY   95 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~   95 (421)
                      ..+++|++|+|++|.|+++    ..++.+++|++|+| +|+++ ..+|...+.+++|++|+|++|.+++- +.... +..
T Consensus        39 ~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ls~N~i~~~-~~~~~-~~~  111 (149)
T 2je0_A           39 DEFEELEFLSTINVGLTSI----ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHLNLSGNKIKDL-STIEP-LKK  111 (149)
T ss_dssp             TTCTTCCEEECTTSCCCCC----TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEEECTTSCCCSH-HHHGG-GGG
T ss_pred             hhcCCCcEEECcCCCCCCc----hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEEECCCCcCCCh-HHHHH-Hhh
Confidence            3466777777777777654    34556677777777 46666 23555555566777777766655331 11111 556


Q ss_pred             CCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      +++|++|++++|++...   ..++...++.+++|+.||++
T Consensus       112 l~~L~~L~l~~N~l~~~---~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          112 LENLKSLDLFNCEVTNL---NDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTCCEEECTTCGGGGS---TTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCCEEeCcCCcccch---HHHHHHHHHHCCCcccccCC
Confidence            77777777777776433   23344566777777777664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.17  E-value=1.5e-10  Score=120.20  Aligned_cols=98  Identities=18%  Similarity=0.111  Sum_probs=77.5

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL   96 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l   96 (421)
                      .+++|+.|+|++|.|++++.    ++.|++|+.|+| +|++..  ++. +..+++|+.|+|++|.+... +.    +..+
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~----l~~l~~L~~L~Ls~N~l~~--~~~-l~~l~~L~~L~Ls~N~l~~l-~~----l~~l  108 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKLTD--IKP-LTNLKNLGWLFLDENKIKDL-SS----LKDL  108 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTT----GGGCTTCCEEECTTSCCCC--CGG-GGGCTTCCEEECCSSCCCCC-TT----STTC
T ss_pred             cCCCCCEEECcCCCCCCChH----HccCCCCCEEEeeCCCCCC--Chh-hccCCCCCEEECcCCCCCCC-hh----hccC
Confidence            46899999999999997643    678999999999 598883  333 67899999999998877543 22    6789


Q ss_pred             CCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          97 PKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      ++|+.|+|++|.+...        ..++.+++|+.|+++
T Consensus       109 ~~L~~L~Ls~N~l~~l--------~~l~~l~~L~~L~Ls  139 (605)
T 1m9s_A          109 KKLKSLSLEHNGISDI--------NGLVHLPQLESLYLG  139 (605)
T ss_dssp             TTCCEEECTTSCCCCC--------GGGGGCTTCSEEECC
T ss_pred             CCCCEEEecCCCCCCC--------ccccCCCccCEEECC
Confidence            9999999999998542        236677777777664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.17  E-value=8.2e-11  Score=108.49  Aligned_cols=127  Identities=20%  Similarity=0.194  Sum_probs=96.9

Q ss_pred             eeecCceeEeecccchhhhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccC
Q psy9363         283 ASINAPFLELVGFDQVHEEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPS  357 (421)
Q Consensus       283 ~~~~~~~~e~~g~~~l~~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~  357 (421)
                      +.++...+..+....+....+|+.+++++    +..+..+..+  ++|++|+|++|.|+ ...+..+..+++ ++|+|++
T Consensus        40 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~  116 (251)
T 3m19_A           40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--TELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG  116 (251)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--TTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             EEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccC--CcCCEEECCCCccc-ccChhHhcccCCCCEEEcCC
Confidence            34444444433333333333677777765    4456668899  99999999999998 111245677889 9999999


Q ss_pred             CcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         358 NRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       358 N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      |+|+.++... ..+++|+.|+|++|+|+.++ +..++.+++|+.|+|++|+|+.++.
T Consensus       117 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A          117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             CcCCCcChhHhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccCH
Confidence            9999988765 78999999999999998765 4578899999999999999998664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.16  E-value=1.4e-11  Score=109.44  Aligned_cols=125  Identities=22%  Similarity=0.264  Sum_probs=89.8

Q ss_pred             HHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcc-------
Q psy9363          14 EIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDED-------   85 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-------   85 (421)
                      .+. .+++|++|+|++|.|+.++    .+..+++|++|+| +|++.  .+|...+.+++|++|+|++|.+++-       
T Consensus        43 ~~~-~l~~L~~L~ls~n~l~~l~----~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~  115 (198)
T 1ds9_A           43 TLS-TLKACKHLALSTNNIEKIS----SLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYNQIASLSGIEKLV  115 (198)
T ss_dssp             HHH-HTTTCSEEECSEEEESCCC----CHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEEECCCHHHHHHHH
T ss_pred             HHh-cCCCCCEEECCCCCCcccc----ccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCCcCCcCCccccCC
Confidence            444 5788999999999888643    4566888888888 58777  4565555556677776655543221       


Q ss_pred             --------------hhhHHHHHhhCCCCceeeecCCCCCCcccc----chhHHHHHHhccCceeccCCccChhhhhccH
Q psy9363          86 --------------FVKEGSLLHYLPKLSSLRFTKNPILAEERV----VSSREKTIARLGGLKLLNGSAIERQERQGSE  146 (421)
Q Consensus        86 --------------~~~~~~ll~~l~~L~~L~l~~N~l~~~~~~----~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae  146 (421)
                                    +..+.. +..+++|++|++++|++......    ..++..++..+++|+.||+..|++.||.+|+
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~~~i~~~e~~~a~  193 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQAN  193 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECCGGGTTTTTTHHH
T ss_pred             CCCEEECCCCcCCchhHHHH-HhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECCcccCHHHHHHHH
Confidence                          122222 77899999999999998554322    4566778999999999999999999998774

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.15  E-value=5e-11  Score=107.84  Aligned_cols=108  Identities=21%  Similarity=0.199  Sum_probs=88.9

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L  376 (421)
                      +++.+.+++    +..+..+..+  ++|+.|+|++|.|+ ...+..+..+++ ++|+|++|+|+.+|... ..+++|+.|
T Consensus        33 ~l~~L~l~~n~i~~i~~~~~~~l--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           33 TITEIRLEQNTIKVIPPGAFSPY--KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TCCEEECCSSCCCEECTTSSTTC--TTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCCCcCHhHhhCC--CCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence            455565554    3334568889  99999999999998 212356778899 99999999999998765 789999999


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCcccCCC
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~p  414 (421)
                      +|++|+|+.+. +..+..+++|+.|+|++|+|+.++..
T Consensus       110 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~~  146 (220)
T 2v9t_B          110 LLNANKINCLR-VDAFQDLHNLNLLSLYDNKLQTIAKG  146 (220)
T ss_dssp             ECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ECCCCCCCEeC-HHHcCCCCCCCEEECCCCcCCEECHH
Confidence            99999998765 67899999999999999999987643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.15  E-value=1.2e-11  Score=119.92  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=54.0

Q ss_pred             CCccEEEee-Ccccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCC-CCCCCCcccccCcccccc
Q psy9363         324 GHIHTLTLG-NMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQEN-NIVDWGEVNALGSLPNLK  399 (421)
Q Consensus       324 ~~L~~L~Ls-~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~  399 (421)
                      .+|+.|+++ +|.++ .+.  ..+..+++ ++|+|++|+|+.+|.  ..+.+|+.|.+.++ .++.+   ..+..+++|+
T Consensus       177 ~~L~~l~l~~~n~l~~i~~--~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~l---P~l~~l~~L~  249 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPN--DVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKKL---PTLEKLVALM  249 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCT--TTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCCC---CCTTTCCSCC
T ss_pred             cchhHHhhccCCcccCCCH--HHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCcC---CCchhCcChh
Confidence            678888887 46676 322  44567788 899999999998875  34677777776444 34443   3577788888


Q ss_pred             cccccccc
Q psy9363         400 YLNLASTN  407 (421)
Q Consensus       400 ~L~Ls~N~  407 (421)
                      .++++++.
T Consensus       250 ~l~l~~~~  257 (350)
T 4ay9_X          250 EASLTYPS  257 (350)
T ss_dssp             EEECSCHH
T ss_pred             hCcCCCCc
Confidence            88887643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.13  E-value=8.6e-11  Score=106.31  Aligned_cols=103  Identities=23%  Similarity=0.196  Sum_probs=82.9

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L  376 (421)
                      +|+.+.+++    +..+..+..+  ++|++|+|++|.|+ ...+..+..+++ ++|+|++|+|+.+++ .+..+++|+.|
T Consensus        58 ~L~~L~L~~N~i~~i~~~~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           58 QLRKINFSNNKITDIEEGAFEGA--SGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCEEECCCCcCCEECHHHhCCC--CCCCEEECCCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            677777765    3334568888  99999999999998 212245677888 999999999998754 45888999999


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      +|++|+|+... +..+..+++|+.|+|++|++.
T Consensus       135 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          135 SLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence            99999997765 568889999999999999986

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.11  E-value=6.2e-12  Score=130.18  Aligned_cols=119  Identities=16%  Similarity=0.127  Sum_probs=66.6

Q ss_pred             HHhhhCCCCcEEECCCCCCCChhhHHHHHh-cCCCCceeec-cc-ccCCCCCCcccccccccchhccccccCCcc-hhhH
Q psy9363          14 EIEQAVPFIEDLDLSRNLLASWFAVGEITC-QLKHLRHLNL-RI-RLKSSSAPAHSYLAEVVFFVHLGRTLCDED-FVKE   89 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~-~l~~L~~L~L-~N-~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~   89 (421)
                      .+...|++|++|+|++|.++  +..+..+. .+++|++|+| ++ .+....++.....+++|++|+|++|.+++. ...+
T Consensus        99 ~l~~~~~~L~~L~L~~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l  176 (594)
T 2p1m_B           99 AMSSSYTWLEEIRLKRMVVT--DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL  176 (594)
T ss_dssp             HHHHHCTTCCEEEEESCBCC--HHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred             HHHHhCCCCCeEEeeCcEEc--HHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence            34556777777777777776  33333333 5777777777 34 443212333344567777777766544322 2222


Q ss_pred             HHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCcc
Q psy9363          90 GSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAI  137 (421)
Q Consensus        90 ~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i  137 (421)
                      ..+...+++|++|++++|. ...  ........+.++++|+.|+++..
T Consensus       177 ~~~~~~~~~L~~L~l~~~~-~~~--~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          177 SHFPDTYTSLVSLNISCLA-SEV--SFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             GGSCTTCCCCCEEECTTCC-SCC--CHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHhhcCCcCcEEEecccC-CcC--CHHHHHHHHHhCCCCcEEecCCC
Confidence            2323456777777777775 111  11223344566788888877643

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.10  E-value=2.3e-10  Score=104.06  Aligned_cols=105  Identities=21%  Similarity=0.264  Sum_probs=87.5

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~  375 (421)
                      +|+.+.+++    +..+..+..+  ++|+.|+|++|.|+ .+.  ..+..+++ +.|+|++|+|+.++... ..+++|+.
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~N~l~~i~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  116 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSL--INLKELYLGSNQLGALPV--GVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKE  116 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCCT--TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCCEEEcCCCccCccCHHHhhCc--cCCcEEECCCCCCCCcCh--hhcccCCCcCEEECCCCcCCccChhHhCcchhhCe
Confidence            556666655    5557778899  99999999999998 322  45677899 99999999999988764 78999999


Q ss_pred             EECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      |+|++|+|+.+  +..+..+++|+.|+|++|+|+.++.
T Consensus       117 L~Ls~N~l~~l--p~~~~~l~~L~~L~L~~N~l~~~~~  152 (229)
T 3e6j_A          117 LFMCCNKLTEL--PRGIERLTHLTHLALDQNQLKSIPH  152 (229)
T ss_dssp             EECCSSCCCSC--CTTGGGCTTCSEEECCSSCCCCCCT
T ss_pred             EeccCCccccc--CcccccCCCCCEEECCCCcCCccCH
Confidence            99999999865  4577899999999999999998664

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.10  E-value=2e-11  Score=103.12  Aligned_cols=95  Identities=25%  Similarity=0.326  Sum_probs=70.3

Q ss_pred             CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcc-cCCCCCCCCCCcEEECcCCCCCCCCccc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITT-LDSVPGMFSSLEELYLQENNIVDWGEVN  390 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~~~~~~  390 (421)
                      .+|..+..+  ++|+.|++++|.++. .  ..+..+++ ++|+|++|+++. +|.....+++|+.|++++|.++.++.+.
T Consensus        33 ~~~~~~~~l--~~L~~L~l~~n~l~~-~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~  107 (149)
T 2je0_A           33 KLEGLTDEF--EELEFLSTINVGLTS-I--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE  107 (149)
T ss_dssp             BCCSCCTTC--TTCCEEECTTSCCCC-C--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred             HHHHHHhhc--CCCcEEECcCCCCCC-c--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence            456666777  888888888888871 1  44566777 888888888886 5443356788888888888886654446


Q ss_pred             ccCccccccccccccccCcccC
Q psy9363         391 ALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       391 ~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      .++.+++|+.|++++|++++++
T Consensus       108 ~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A          108 PLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             GGGGCTTCCEEECTTCGGGGST
T ss_pred             HHhhCCCCCEEeCcCCcccchH
Confidence            7778888888888888888754

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.10  E-value=1.7e-10  Score=102.13  Aligned_cols=102  Identities=20%  Similarity=0.182  Sum_probs=83.4

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L  376 (421)
                      +++.+.+++   ..+|..+..+  ++|+.|+|++|.|+ ..  +..+..+++ ++|+|++|+|+.+++. +..+++|+.|
T Consensus        32 ~l~~L~L~~n~i~~ip~~~~~l--~~L~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L  107 (193)
T 2wfh_A           32 DVTELYLDGNQFTLVPKELSNY--KHLTLIDLSNNRISTLS--NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLL  107 (193)
T ss_dssp             TCCEEECCSSCCCSCCGGGGGC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCCcCchhHHHhhcc--cCCCEEECCCCcCCEeC--HhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEE
Confidence            445555554   4567788899  99999999999998 32  245677888 9999999999988864 4889999999


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      +|++|+|+.++ ...+..+++|+.|+|++|++.
T Consensus       108 ~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A          108 SLHGNDISVVP-EGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             ECCSSCCCBCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             ECCCCCCCeeC-hhhhhcCccccEEEeCCCCee
Confidence            99999998765 456888999999999999984

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.10  E-value=7.6e-11  Score=101.65  Aligned_cols=107  Identities=18%  Similarity=0.213  Sum_probs=83.1

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccC--CCCCCCCCCcEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLD--SVPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~--~~~~~l~~L~~L  376 (421)
                      +|+.+.+++   ..+ ..+..+  ++|+.|+|++|.++ ..++..+..+++ ++|+|++|.|+.++  ..+..+++|+.|
T Consensus        50 ~L~~L~l~~n~l~~~-~~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  125 (168)
T 2ell_A           50 NLEFLSLINVGLISV-SNLPKL--PKLKKLELSENRIF-GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL  125 (168)
T ss_dssp             GCCEEEEESSCCCCC-SSCCCC--SSCCEEEEESCCCC-SCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred             CCCEEeCcCCCCCCh-hhhccC--CCCCEEECcCCcCc-hHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence            667776665   233 566778  89999999999998 224466667888 99999999999876  445888999999


Q ss_pred             ECcCCCCCCCCc--ccccCccccccccccccccCcccCC
Q psy9363         377 YLQENNIVDWGE--VNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       377 ~Ls~N~l~~~~~--~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      ++++|.++..+.  ...+..+++|+.|++++|.+..++.
T Consensus       126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            999999977542  1367889999999999999987654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.10  E-value=3.2e-10  Score=101.25  Aligned_cols=103  Identities=15%  Similarity=0.172  Sum_probs=73.2

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~  375 (421)
                      +|+.+++++    +..+..+..+  ++|++|+|++|.++ .+  +..+..+++ ++|+|++|+|+.++... ..+++|+.
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  128 (208)
T 2o6s_A           53 SLTQLYLGGNKLQSLPNGVFNKL--TSLTYLNLSTNQLQSLP--NGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKD  128 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCcEEECCCCccCccChhhcCCC--CCcCEEECCCCcCCccC--HhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCE
Confidence            566666654    3334456777  88888888888887 22  134566777 88888888888777653 67888888


Q ss_pred             EECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      |+|++|+++.++ ...+..+++|+.|++++|++..
T Consensus       129 L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          129 LRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             EECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBCC
T ss_pred             EECCCCccceeC-HHHhccCCCccEEEecCCCeec
Confidence            888888886654 3456778888888888887764

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.08  E-value=1e-10  Score=101.88  Aligned_cols=82  Identities=22%  Similarity=0.350  Sum_probs=38.2

Q ss_pred             CccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         325 HIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       325 ~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      +|+.|+|++|.|+ .    ..+..+++ ++|+|++|+|+.+|+.. ..+++|+.|+|++|+|..++.+..++.+++|+.|
T Consensus        43 ~L~~L~Ls~N~l~~~----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L  118 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYL  118 (176)
T ss_dssp             CCSEEECCSSCCCEE----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEE
T ss_pred             CCCEEECCCCCCCcc----cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEE
Confidence            4555555555554 1    12333444 55555555555444333 4445555555555555443322244444555555


Q ss_pred             ccccccCcc
Q psy9363         402 NLASTNLRN  410 (421)
Q Consensus       402 ~Ls~N~l~~  410 (421)
                      ++++|+++.
T Consensus       119 ~l~~N~i~~  127 (176)
T 1a9n_A          119 CILRNPVTN  127 (176)
T ss_dssp             ECCSSGGGG
T ss_pred             EecCCCCCC
Confidence            555555543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.08  E-value=1.5e-10  Score=108.04  Aligned_cols=106  Identities=21%  Similarity=0.261  Sum_probs=56.6

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCC-CCCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDS-VPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~-~~~~l~~L~~L  376 (421)
                      +|+.+++++    +..+..+..+  ++|++|+|++|.++ ...+..+..+++ ++|++++|.++.++. .+..+++|++|
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSL--SHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL  129 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTC--TTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred             CCcEEECCCCcCCccCHHHccCC--cCCCEEECCCCccC-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence            455555543    1122345555  66666666666665 111133445555 666666666665544 23555666666


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      ++++|.++.+..+..++.+++|++|++++|+++.+
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~  164 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence            66666665544344555566666666666666554

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.08  E-value=3.8e-10  Score=100.77  Aligned_cols=106  Identities=20%  Similarity=0.247  Sum_probs=85.6

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~  375 (421)
                      +++.+++++    +..+..+..+  ++|++|+|++|.++ .+  +..+..+++ ++|+|++|+|+.++... ..+++|+.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  104 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDEL--TSLTQLYLGGNKLQSLP--NGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKE  104 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEcCCCccCcCChhhhccc--ccCcEEECCCCccCccC--hhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCE
Confidence            444555544    3445567889  99999999999998 32  244577888 99999999999988764 78999999


Q ss_pred             EECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      |+|++|+|+.++ ...+..+++|+.|++++|++++++.
T Consensus       105 L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~  141 (208)
T 2o6s_A          105 LALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPD  141 (208)
T ss_dssp             EECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCH
Confidence            999999998765 4568899999999999999997654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.08  E-value=1.6e-10  Score=119.14  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      .+|+.|+|++|.|+++   |..+  +++|++|+| +|+++  .+|   +.+++|++|+|++|.+++ ++.+      ..+
T Consensus        59 ~~L~~L~Ls~n~L~~l---p~~l--~~~L~~L~Ls~N~l~--~ip---~~l~~L~~L~Ls~N~l~~-ip~l------~~~  121 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSL---PDNL--PPQITVLEITQNALI--SLP---ELPASLEYLDACDNRLST-LPEL------PAS  121 (571)
T ss_dssp             TTCSEEECCSSCCSCC---CSCC--CTTCSEEECCSSCCS--CCC---CCCTTCCEEECCSSCCSC-CCCC------CTT
T ss_pred             CCccEEEeCCCCCCcc---CHhH--cCCCCEEECcCCCCc--ccc---cccCCCCEEEccCCCCCC-cchh------hcC
Confidence            4899999999999854   4422  488999999 59888  466   467999999999887755 3332      229


Q ss_pred             CceeeecCCCCCC
Q psy9363          99 LSSLRFTKNPILA  111 (421)
Q Consensus        99 L~~L~l~~N~l~~  111 (421)
                      |++|+|++|.+..
T Consensus       122 L~~L~Ls~N~l~~  134 (571)
T 3cvr_A          122 LKHLDVDNNQLTM  134 (571)
T ss_dssp             CCEEECCSSCCSC
T ss_pred             CCEEECCCCcCCC
Confidence            9999999999854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.07  E-value=1.4e-10  Score=102.65  Aligned_cols=90  Identities=21%  Similarity=0.145  Sum_probs=76.3

Q ss_pred             hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGS  394 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  394 (421)
                      .+..+  ++|+.|+|++|.|+ ...+..+..+++ ++|+|++|+|+.+++. +..+++|+.|+|++|+|+... +..+..
T Consensus        49 ~~~~l--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~  124 (192)
T 1w8a_A           49 LFGRL--PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSFEH  124 (192)
T ss_dssp             SGGGC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSSTT
T ss_pred             ccccC--CCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC-HHHhhc
Confidence            47889  99999999999998 222356777888 9999999999988765 478999999999999997654 667889


Q ss_pred             cccccccccccccCcc
Q psy9363         395 LPNLKYLNLASTNLRN  410 (421)
Q Consensus       395 l~~L~~L~Ls~N~l~~  410 (421)
                      +++|+.|+|++|+++.
T Consensus       125 l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          125 LNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CTTCCEEECTTCCBCC
T ss_pred             CCCCCEEEeCCCCccC
Confidence            9999999999999874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.05  E-value=2.9e-10  Score=110.73  Aligned_cols=125  Identities=21%  Similarity=0.253  Sum_probs=90.2

Q ss_pred             eeecCceeEeecccchh-hhhCCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEc
Q psy9363         283 ASINAPFLELVGFDQVH-EEQNTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKL  355 (421)
Q Consensus       283 ~~~~~~~~e~~g~~~l~-~~~~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L  355 (421)
                      +.++.+.+..+....+. ...+|+.|.|++    +..+..+..+  ++|++|+|++|.|+ ..  +..+..+++ +.|+|
T Consensus        44 L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l--~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L  119 (361)
T 2xot_A           44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPV--PNLRYLDLSSNHLHTLD--EFLFSDLQALEVLLL  119 (361)
T ss_dssp             EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTC--TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEEC
T ss_pred             EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCC--CCCCEEECCCCcCCcCC--HHHhCCCcCCCEEEC
Confidence            44555555544433333 222677777765    3334568888  99999999999998 32  145677888 99999


Q ss_pred             cCCcCcccCC-CCCCCCCCcEEECcCCCCCCCCccccc---CccccccccccccccCcccC
Q psy9363         356 PSNRITTLDS-VPGMFSSLEELYLQENNIVDWGEVNAL---GSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       356 ~~N~l~~l~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~l---~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      ++|+|+.+++ .+..+++|+.|+|++|+|+.++ ...+   ..+++|+.|+|++|+|+.++
T Consensus       120 ~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~  179 (361)
T 2xot_A          120 YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFP-VELIKDGNKLPKLMLLDLSSNKLKKLP  179 (361)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-GGGTC----CTTCCEEECCSSCCCCCC
T ss_pred             CCCcccEECHHHhCCcccCCEEECCCCcCCeeC-HHHhcCcccCCcCCEEECCCCCCCccC
Confidence            9999998754 4588899999999999998765 3344   56899999999999998765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.04  E-value=2.6e-10  Score=101.09  Aligned_cols=101  Identities=19%  Similarity=0.235  Sum_probs=70.9

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCc-CcccCCCCCCCCCCcEE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNR-ITTLDSVPGMFSSLEEL  376 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~-l~~l~~~~~~l~~L~~L  376 (421)
                      +|+.+.+++    +..+..+..+  ++|++|+|++|.++ ...+..+..+++ ++|+|++|+ ++.++ .+..+++|+.|
T Consensus        89 ~L~~L~l~~n~l~~~~~~~l~~l--~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L  164 (197)
T 4ezg_A           89 NLERLRIMGKDVTSDKIPNLSGL--TSLTLLDISHSAHD-DSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL  164 (197)
T ss_dssp             TCCEEEEECTTCBGGGSCCCTTC--TTCCEEECCSSBCB-GGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEE
T ss_pred             CCCEEEeECCccCcccChhhcCC--CCCCEEEecCCccC-cHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEE
Confidence            566666554    2235556777  88888888888887 333455667788 888888887 77776 46778888888


Q ss_pred             ECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         377 YLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       377 ~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      ++++|.+++++   .+..+++|+.|++++|+|.+
T Consensus       165 ~l~~n~i~~~~---~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          165 NIQFDGVHDYR---GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             ECTTBCCCCCT---TGGGCSSCCEEEECBC----
T ss_pred             ECCCCCCcChH---HhccCCCCCEEEeeCcccCC
Confidence            88888886643   57778888888888888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.04  E-value=4.9e-10  Score=97.43  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=82.1

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~  375 (421)
                      +++.+.+++    +..+..+..+  ++|++|+|++|.|+ .+  +..+..+++ ++|+|++|+|+.++... ..+++|+.
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKL--TQLTKLSLSQNQIQSLP--DGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTC--TTCSEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CCcEEEeCCCcccEeCHHHhcCc--ccccEEECCCCcceEeC--hhHccCCCccCEEECCCCCccccCHHHhhCCcccCE
Confidence            444555543    3344567888  99999999999998 32  244567888 99999999999888754 78999999


Q ss_pred             EECcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      |+|++|+++.++ ...+..+++|+.|++++|++..
T Consensus       105 L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A          105 LALDTNQLKSVP-DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EECCSSCCSCCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred             EECcCCcceEeC-HHHhcCCcccCEEEecCCCeec
Confidence            999999998765 4457889999999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.04  E-value=4.4e-10  Score=101.61  Aligned_cols=94  Identities=16%  Similarity=0.188  Sum_probs=80.9

Q ss_pred             hhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCccccc
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      ..+..+  ++|+.|+|++|.|+ ..  +..+..+++ ++|+|++|+|+.+++. +..+++|+.|+|++|+|+.+. +..+
T Consensus        51 ~~~~~l--~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~  125 (220)
T 2v70_A           51 GIFKKL--PQLRKINFSNNKITDIE--EGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVG-NDSF  125 (220)
T ss_dssp             CCGGGC--TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBC-TTSS
T ss_pred             hhhccC--CCCCEEECCCCcCCEEC--HHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeEC-HhHc
Confidence            457899  99999999999998 32  245778889 9999999999988865 488999999999999997765 6688


Q ss_pred             CccccccccccccccCcccCCC
Q psy9363         393 GSLPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~i~~p  414 (421)
                      ..+++|+.|+|++|+|+.+...
T Consensus       126 ~~l~~L~~L~L~~N~l~~~~~~  147 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQITTVAPG  147 (220)
T ss_dssp             TTCTTCSEEECTTSCCCCBCTT
T ss_pred             CCCccCCEEECCCCcCCEECHH
Confidence            9999999999999999987543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.01  E-value=3.9e-10  Score=97.69  Aligned_cols=85  Identities=19%  Similarity=0.165  Sum_probs=70.4

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ++|+.|+|++|.|+ .-.+..+..+++ ++|+|++|+|+.+++.. ..+++|+.|+|++|+|+.++ +..+..+++|+.|
T Consensus        30 ~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L  107 (170)
T 3g39_A           30 TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHI  107 (170)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE
T ss_pred             CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCEE
Confidence            78899999999998 112355677888 99999999999888765 78899999999999997765 4568889999999


Q ss_pred             ccccccCcc
Q psy9363         402 NLASTNLRN  410 (421)
Q Consensus       402 ~Ls~N~l~~  410 (421)
                      +|++|+++-
T Consensus       108 ~L~~N~~~c  116 (170)
T 3g39_A          108 WLLNNPWDC  116 (170)
T ss_dssp             ECCSSCBCT
T ss_pred             EeCCCCCCC
Confidence            999998864

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.00  E-value=2.5e-10  Score=110.66  Aligned_cols=84  Identities=20%  Similarity=0.093  Sum_probs=63.2

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEcc-CCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLP-SNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~-~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      ..++.|+|++|.|+  .++......++ ++|+++ +|.++.||... ..+++|+.|||++|+|+.++ ...+.++++|+.
T Consensus       154 ~~l~~L~L~~N~i~--~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-~~~~~~L~~L~~  230 (350)
T 4ay9_X          154 FESVILWLNKNGIQ--EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLRA  230 (350)
T ss_dssp             SSCEEEECCSSCCC--EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-SSSCTTCCEEEC
T ss_pred             hhhhhhcccccccc--CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-hhhhccchHhhh
Confidence            56899999999998  12222334456 889997 68999999765 88999999999999999876 456777777777


Q ss_pred             cccccccCcccC
Q psy9363         401 LNLASTNLRNIK  412 (421)
Q Consensus       401 L~Ls~N~l~~i~  412 (421)
                      +++  +.++.++
T Consensus       231 l~~--~~l~~lP  240 (350)
T 4ay9_X          231 RST--YNLKKLP  240 (350)
T ss_dssp             TTC--TTCCCCC
T ss_pred             ccC--CCcCcCC
Confidence            665  4466554

>1whm_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1

Probab=98.98  E-value=1.6e-09  Score=81.22  Aligned_cols=67  Identities=24%  Similarity=0.472  Sum_probs=57.8

Q ss_pred             cCCCCceEEeec--C--ceeEEEEecccCCC--CCcEEEEEecCCCCCCCCCeeCCEEeE-ecCCCCceeEEecCcc
Q psy9363         182 EDDIGLRVCDSE--G--HRGTIRYVGSVEGT--QGVWYGIDWDSETRGKHDGSHNGVKYF-WTHSTTSGSFMRRDKL  251 (421)
Q Consensus       182 ~~~i~~rv~~l~--~--~~~~~r~~G~ip~~--~g~~~gle~d~~~~g~~~G~~~g~~~f-~~~~~~~gsf~~~~~l  251 (421)
                      .+.+++|+. +.  .  .++++||+|.+|..  .+.|+||++|++. ||++|+++|+||| .|. +.++.|+.+..+
T Consensus         9 ~i~VG~Rc~-V~~~~~~rrGtVrfvG~~~~~~~~G~wVGVelDEP~-GknDGsv~G~ryF~~c~-~~~g~fV~~~d~   82 (92)
T 1whm_A            9 PLEINSRVS-LKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPI-GNWDGRFDGVQLCSFAC-VESTILLHINDI   82 (92)
T ss_dssp             SSCTTCEEE-EEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSC-CCCCSEETTEESCSSCC-TTTEEEEEGGGE
T ss_pred             CccccCeEE-EcCCCceeeEEEEEEecCCCcCCCCeEEEEEcCCCC-CCCCCeECCEEeccccC-CCcceEcccccC
Confidence            367999987 43  2  78999999999864  5899999999998 9999999999999 664 899999998765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.98  E-value=4.7e-10  Score=115.78  Aligned_cols=104  Identities=20%  Similarity=0.225  Sum_probs=89.1

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEEC
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYL  378 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~L  378 (421)
                      .|+.+.+++   ..+|. +..+  ++|+.|+|++|.|+  .+|..+..+++ +.|+|++|+|+++| .+..+++|+.|+|
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l--~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQL--LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGG--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCCCcC-cccc--ccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEEC
Confidence            456677765   45666 8899  99999999999998  34456788999 99999999999998 6899999999999


Q ss_pred             cCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         379 QENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       379 s~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      ++|+|+....+..++.+++|+.|+|++|+|++++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~  549 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE  549 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence            9999977643668999999999999999999854

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.96  E-value=4.3e-10  Score=99.72  Aligned_cols=127  Identities=17%  Similarity=0.171  Sum_probs=91.7

Q ss_pred             cceeeeeecCceeEeecccchhhhhCCCccCCCC--CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEE
Q psy9363         278 VEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN--DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLK  354 (421)
Q Consensus       278 ~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~--~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~  354 (421)
                      .....+.+++..+..+  ..+....+|+.+.+++  ......+..+  ++|++|++++|.++ ...+..+..+++ ++|+
T Consensus        44 ~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~l~~n~~~~~~~l~~l--~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNPISGL--SNLERLRIMGKDVT-SDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCSCC--TTGGGCTTCSEEEEESCCCSCCGGGTTC--TTCCEEEEECTTCB-GGGSCCCTTCTTCCEEE
T ss_pred             CCccEEeccCCCccCh--HHHhcCCCCCEEEccCCCCCcchhhhcC--CCCCEEEeECCccC-cccChhhcCCCCCCEEE
Confidence            3445555555544422  2232223777777765  2233467788  99999999999998 222345667888 9999


Q ss_pred             ccCCcCcc-cCCCCCCCCCCcEEECcCCC-CCCCCcccccCccccccccccccccCcccC
Q psy9363         355 LPSNRITT-LDSVPGMFSSLEELYLQENN-IVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       355 L~~N~l~~-l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      |++|+++. .+..+..+++|+.|++++|. +.+++   .+..+++|+.|++++|++++++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~  175 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR  175 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH
Confidence            99999986 44445889999999999998 76643   6888999999999999999864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.96  E-value=4e-10  Score=104.58  Aligned_cols=113  Identities=19%  Similarity=0.118  Sum_probs=85.8

Q ss_pred             EECCCCCCCChhhHHHHH-hcCCCCceeec-ccccCCC-CCCcccccccccchhccccccCCcchhhHHHHHhhCCCCce
Q psy9363          25 LDLSRNLLASWFAVGEIT-CQLKHLRHLNL-RIRLKSS-SAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKLSS  101 (421)
Q Consensus        25 L~Ls~N~ls~~~~i~~~~-~~l~~L~~L~L-~N~l~~~-~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L~~  101 (421)
                      ++++.|....+..+.+++ .++|+|+.|+| +|++++. .+|.....+++|+.|+|++|.+++ +.++.. +..+ +|++
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~-~~~l~~-l~~l-~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS-ERELDK-IKGL-KLEE  224 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS-GGGGGG-GTTS-CCSE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC-chhhhh-cccC-Ccce
Confidence            677788766665555555 57999999999 5888842 345556688999999998887743 344444 4445 9999


Q ss_pred             eeecCCCCCCccc-cchhHHHHHHhccCceeccCCccChh
Q psy9363         102 LRFTKNPILAEER-VVSSREKTIARLGGLKLLNGSAIERQ  140 (421)
Q Consensus       102 L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~ln~s~i~~~  140 (421)
                      |+|++||++.... .+.||..+++.+|+|+.||+..|++.
T Consensus       225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~v~p~  264 (267)
T 3rw6_A          225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHELPPP  264 (267)
T ss_dssp             EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCBCCCC
T ss_pred             EEccCCcCccccCcchhHHHHHHHHCcccCeECCcCCCCC
Confidence            9999999976432 35788999999999999999988763

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.95  E-value=1.5e-09  Score=96.10  Aligned_cols=88  Identities=23%  Similarity=0.285  Sum_probs=76.8

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ++|+.|+|++|.|+  .++..+..+++ +.|+|++|+|+.+++. +..+++|+.|+|++|+|+.++ +..+..+++|+.|
T Consensus        31 ~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred             CCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence            78999999999998  23356778899 9999999999998764 588999999999999998876 5679999999999


Q ss_pred             ccccccCcccCCC
Q psy9363         402 NLASTNLRNIKLN  414 (421)
Q Consensus       402 ~Ls~N~l~~i~~p  414 (421)
                      +|++|+|+.++..
T Consensus       108 ~L~~N~l~~~~~~  120 (193)
T 2wfh_A          108 SLHGNDISVVPEG  120 (193)
T ss_dssp             ECCSSCCCBCCTT
T ss_pred             ECCCCCCCeeChh
Confidence            9999999986643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.94  E-value=8.3e-10  Score=96.04  Aligned_cols=85  Identities=18%  Similarity=0.155  Sum_probs=69.0

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ++|+.|+|++|.|+ .-.+..+..+++ +.|+|++|+|+.+|... ..+++|+.|+|++|+|+.++ ...+..+++|+.|
T Consensus        33 ~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L  110 (174)
T 2r9u_A           33 TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHI  110 (174)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEE
T ss_pred             CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhccccCCCEE
Confidence            78899999999998 222355677888 99999999999888765 78899999999999997765 4458889999999


Q ss_pred             ccccccCcc
Q psy9363         402 NLASTNLRN  410 (421)
Q Consensus       402 ~Ls~N~l~~  410 (421)
                      +|++|++..
T Consensus       111 ~L~~N~~~c  119 (174)
T 2r9u_A          111 YLYNNPWDC  119 (174)
T ss_dssp             ECCSSCBCT
T ss_pred             EeCCCCccc
Confidence            999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.93  E-value=7.4e-10  Score=96.36  Aligned_cols=87  Identities=16%  Similarity=0.086  Sum_probs=63.7

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCc-ccccccccchhccccccCCcchhhHHHHHhhCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPA-HSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLP   97 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~-~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~   97 (421)
                      ++|++|+|++|.|+..  .+..+..+++|++|+| +|+++.  +|. ..+.+++|++|+|++|.+..-+...   +..++
T Consensus        33 ~~L~~L~Ls~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~N~l~~l~~~~---~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKL--EPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLNDNHLKSIPRGA---FDNLK  105 (174)
T ss_dssp             TTCSEEECCSSCCCCC--CTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCT
T ss_pred             CCCcEEEeCCCCcccc--CHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCCCccceeCHHH---hcccc
Confidence            6888888888888843  3556778888888888 588873  343 3467788888888877775444433   56788


Q ss_pred             CCceeeecCCCCCCcc
Q psy9363          98 KLSSLRFTKNPILAEE  113 (421)
Q Consensus        98 ~L~~L~l~~N~l~~~~  113 (421)
                      +|++|+|++|+|....
T Consensus       106 ~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A          106 SLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             TCSEEECCSSCBCTTB
T ss_pred             CCCEEEeCCCCccccc
Confidence            8888888888886544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.93  E-value=1.3e-09  Score=101.30  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=59.4

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~  377 (421)
                      +|+.+.+++   ..++. +..+  ++|+.|+|++|.++ .+.   .. . ++ ++|+|++|+|+.++ .+..+++|+.|+
T Consensus        64 ~L~~L~L~~N~i~~~~~-l~~l--~~L~~L~L~~N~l~~l~~---~~-~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           64 NLKELHLSHNQISDLSP-LKDL--TKLEELSVNRNRLKNLNG---IP-S-ACLSRLFLDNNELRDTD-SLIHLKNLEILS  134 (263)
T ss_dssp             TCCEEECCSSCCCCCGG-GTTC--SSCCEEECCSSCCSCCTT---CC-C-SSCCEEECCSSCCSBSG-GGTTCTTCCEEE
T ss_pred             CCCEEECCCCccCCChh-hccC--CCCCEEECCCCccCCcCc---cc-c-CcccEEEccCCccCCCh-hhcCcccccEEE
Confidence            666666665   33333 6666  77777777777776 221   11 1 45 66777777666654 256666677777


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCccc
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i  411 (421)
                      |++|+|++.+   .++.+++|+.|+|++|+++++
T Consensus       135 Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A          135 IRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCCcCCCCh---HHccCCCCCEEECCCCcCcch
Confidence            7777765532   455666666666666666654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.91  E-value=2.4e-10  Score=100.99  Aligned_cols=108  Identities=24%  Similarity=0.181  Sum_probs=85.4

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ++|++|+|++|.|+.... ...++.+++|++|+| +|+++ ...|..++.+++|++|+|++|.+.+..+..   +..+++
T Consensus        29 ~~l~~L~l~~n~i~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~---~~~l~~  103 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISS-DGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKM---FLGLHQ  103 (192)
T ss_dssp             TTCSEEECCSCCCCSBCC-SCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSS---STTCTT
T ss_pred             CCCCEEECCCCcCCccCC-ccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCCCcCCccCHHH---hcCCCC
Confidence            489999999999985431 113678999999999 59998 455667778899999999988776554443   567999


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      |++|+|++|.+...      .+..++.+++|+.|+++..+
T Consensus       104 L~~L~L~~N~l~~~------~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          104 LKTLNLYDNQISCV------MPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CCEEECCSSCCCEE------CTTSSTTCTTCCEEECTTCC
T ss_pred             CCEEECCCCcCCee------CHHHhhcCCCCCEEEeCCCC
Confidence            99999999998443      35568889999999998654

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.91  E-value=1.2e-09  Score=106.19  Aligned_cols=106  Identities=24%  Similarity=0.286  Sum_probs=85.5

Q ss_pred             CCCccCCCC----CCCchhhh-cCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCC-CCCCCCCc
Q psy9363         303 NTNKLPIPN----DTSGVMEQ-IFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSV-PGMFSSLE  374 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~-~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~-~~~l~~L~  374 (421)
                      .++.|+|++    +..+..+. .+  ++|+.|+|++|.|+ ..  +..+..+++ ++|+|++|+|+.++.. +..+++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l--~~L~~L~L~~N~i~~i~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  115 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRL--TNLHSLLLSHNHLNFIS--SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALE  115 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCC--TTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CCCEEECCCCCCCccChhhhhhcc--cccCEEECCCCcCCccC--hhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCC
Confidence            345555554    33344455 88  99999999999998 32  245678889 9999999999998765 48899999


Q ss_pred             EEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         375 ELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       375 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      .|+|++|+|+.+. +..+..+++|+.|+|++|+|+.++.
T Consensus       116 ~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~  153 (361)
T 2xot_A          116 VLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPV  153 (361)
T ss_dssp             EEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCG
T ss_pred             EEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCH
Confidence            9999999997765 5689999999999999999998654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.88  E-value=1.4e-09  Score=112.15  Aligned_cols=104  Identities=19%  Similarity=0.187  Sum_probs=53.7

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcch-hhHHHHHhh
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDF-VKEGSLLHY   95 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~-~~~~~ll~~   95 (421)
                      .+++|++|+|++|.|+.   +|..++.|++|+.|+| +|++++  +| .++.+++|++|+|++|.+++.. +..   +..
T Consensus       461 ~l~~L~~L~Ls~N~l~~---lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~---l~~  531 (567)
T 1dce_A          461 QLLLVTHLDLSHNRLRA---LPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQSAAIQP---LVS  531 (567)
T ss_dssp             GGTTCCEEECCSSCCCC---CCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCSSSTTGG---GGG
T ss_pred             ccccCcEeecCcccccc---cchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECCCCCCCCCCCcHH---Hhc
Confidence            35566666666666653   2344555666666666 355552  34 4455556666666555543331 221   444


Q ss_pred             CCCCceeeecCCCCCCccccchhHHHHHHhccCceecc
Q psy9363          96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLN  133 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln  133 (421)
                      +++|+.|+|++|++....   ..+...+..+|+|++||
T Consensus       532 l~~L~~L~L~~N~l~~~~---~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          532 CPRLVLLNLQGNSLCQEE---GIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CTTCCEEECTTSGGGGSS---SCTTHHHHHCTTCSEEE
T ss_pred             CCCCCEEEecCCcCCCCc---cHHHHHHHHCcccCccC
Confidence            666666666666654332   22333445555665554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.88  E-value=4.9e-09  Score=98.88  Aligned_cols=123  Identities=21%  Similarity=0.247  Sum_probs=86.3

Q ss_pred             cceeeeeecCceeEeecccchhhhhCCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cE
Q psy9363         278 VEEVKASINAPFLELVGFDQVHEEQNTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TC  352 (421)
Q Consensus       278 ~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~  352 (421)
                      .....+.++.+.+..  +..+....+|+.+.+++   ..+ ..+..+  ++|+.|+|++|.++ .    ..+..+++ ++
T Consensus        90 ~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l--~~L~~L~l~~n~l~~~----~~l~~l~~L~~  160 (291)
T 1h6t_A           90 KNLGWLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI-NGLVHL--PQLESLYLGNNKITDI----TVLSRLTKLDT  160 (291)
T ss_dssp             TTCCEEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC-GGGGGC--TTCCEEECCSSCCCCC----GGGGGCTTCSE
T ss_pred             CCCCEEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC-hhhcCC--CCCCEEEccCCcCCcc----hhhccCCCCCE
Confidence            344555565554433  22333333777777765   333 346677  88888888888887 3    34566788 88


Q ss_pred             EEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       353 L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      |+|++|+|+.+++ +..+++|+.|+|++|.|++++   .+..+++|+.|++++|+++..+.
T Consensus       161 L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~---~l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          161 LSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG---GGTTCTTCSEEEEEEEEEECCCE
T ss_pred             EEccCCccccchh-hcCCCccCEEECCCCcCCCCh---hhccCCCCCEEECcCCcccCCcc
Confidence            8888888888765 778888888888888887643   47788888888888888876443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.88  E-value=6.4e-09  Score=96.57  Aligned_cols=98  Identities=23%  Similarity=0.385  Sum_probs=82.4

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~  377 (421)
                      +|+.+.+++   ..++ .+..+  ++|+.|+|++|.|+ .+   . +..+++ ++|+|++|+++.++....  ++|+.|+
T Consensus        42 ~L~~L~l~~n~i~~l~-~l~~l--~~L~~L~L~~N~i~~~~---~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           42 GVQNFNGDNSNIQSLA-GMQFF--TNLKELHLSHNQISDLS---P-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLF  112 (263)
T ss_dssp             TCSEEECTTSCCCCCT-TGGGC--TTCCEEECCSSCCCCCG---G-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEE
T ss_pred             cCcEEECcCCCcccch-HHhhC--CCCCEEECCCCccCCCh---h-hccCCCCCEEECCCCccCCcCcccc--CcccEEE
Confidence            777777775   4445 57888  99999999999999 43   2 778899 999999999999876333  9999999


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      |++|+++.+   ..++.+++|+.|+|++|+|++++
T Consensus       113 L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~~  144 (263)
T 1xeu_A          113 LDNNELRDT---DSLIHLKNLEILSIRNNKLKSIV  144 (263)
T ss_dssp             CCSSCCSBS---GGGTTCTTCCEEECTTSCCCBCG
T ss_pred             ccCCccCCC---hhhcCcccccEEECCCCcCCCCh
Confidence            999999774   36889999999999999999874

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.85  E-value=1.4e-09  Score=99.33  Aligned_cols=129  Identities=14%  Similarity=0.090  Sum_probs=82.2

Q ss_pred             ccceeeeeecCce-eEeecccchhhhhCCCccCCCC-----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCC
Q psy9363         277 NVEEVKASINAPF-LELVGFDQVHEEQNTNKLPIPN-----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFP  349 (421)
Q Consensus       277 ~~~~~~~~~~~~~-~e~~g~~~l~~~~~L~~l~l~~-----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~  349 (421)
                      ......+.++... ++.+....+....+|+.+++++     ...+..+..+  ++|++|++++|.++ .+   . +..++
T Consensus        54 l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l--~~L~~L~l~~n~l~~lp---~-~~~l~  127 (239)
T 2xwt_C           54 LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKEL--PLLKFLGIFNTGLKMFP---D-LTKVY  127 (239)
T ss_dssp             CTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECC--TTCCEEEEEEECCCSCC---C-CTTCC
T ss_pred             CCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCC--CCCCEEeCCCCCCcccc---c-ccccc
Confidence            3445556666553 5444333332222566665542     2223456777  88888888888887 32   2 44555


Q ss_pred             C-c---EEEccCC-cCcccCCC-CCCCCCCc-EEECcCCCCCCCCcccccCcccccccccccccc-CcccCC
Q psy9363         350 V-T---CLKLPSN-RITTLDSV-PGMFSSLE-ELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-LRNIKL  413 (421)
Q Consensus       350 ~-~---~L~L~~N-~l~~l~~~-~~~l~~L~-~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~-l~~i~~  413 (421)
                      + +   +|++++| +++.++.. +..+++|+ .|++++|+++.++ ...+.. ++|+.|++++|+ ++.++.
T Consensus       128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~  197 (239)
T 2xwt_C          128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDK  197 (239)
T ss_dssp             BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECT
T ss_pred             ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCH
Confidence            6 6   8888888 88877764 47788888 8888888886554 233444 788888888884 876643

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.83  E-value=8.9e-09  Score=89.37  Aligned_cols=88  Identities=23%  Similarity=0.268  Sum_probs=74.7

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ++|+.|++++|.++ ...+..+..+++ ++|+|++|+|+.++... ..+++|+.|+|++|+|+..+ ...+..+++|+.|
T Consensus        28 ~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L  105 (177)
T 2o6r_A           28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKLTQLKEL  105 (177)
T ss_dssp             TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEE
T ss_pred             CCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCCcccCEE
Confidence            78999999999998 111244677888 99999999999988764 88999999999999998765 4567899999999


Q ss_pred             ccccccCcccCC
Q psy9363         402 NLASTNLRNIKL  413 (421)
Q Consensus       402 ~Ls~N~l~~i~~  413 (421)
                      ++++|+++.++.
T Consensus       106 ~l~~N~l~~~~~  117 (177)
T 2o6r_A          106 ALDTNQLKSVPD  117 (177)
T ss_dssp             ECCSSCCSCCCT
T ss_pred             ECcCCcceEeCH
Confidence            999999997654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.82  E-value=2.6e-09  Score=113.48  Aligned_cols=92  Identities=21%  Similarity=0.302  Sum_probs=53.6

Q ss_pred             CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNA  391 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  391 (421)
                      .+|..+..+  ++|+.|+|++|.|+  .++..+..+++ ++|+|++|+|+.||..+..+++|+.|+|++|.|+.+  +..
T Consensus       238 ~l~~~~~~l--~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~l--p~~  311 (727)
T 4b8c_D          238 NISANIFKY--DFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTL--PWE  311 (727)
T ss_dssp             CCCGGGGGC--CSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCC--CSS
T ss_pred             CCChhhcCC--CCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCcc--Chh
Confidence            344444455  66666666666665  22233455556 666666666666665556666666666666666543  234


Q ss_pred             cCccccccccccccccCcc
Q psy9363         392 LGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       392 l~~l~~L~~L~Ls~N~l~~  410 (421)
                      |+.+++|+.|+|++|+|++
T Consensus       312 ~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          312 FGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TTSCTTCCCEECTTSCCCS
T ss_pred             hhcCCCccEEeCCCCccCC
Confidence            6666666666666666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.80  E-value=5.4e-09  Score=90.44  Aligned_cols=87  Identities=15%  Similarity=0.064  Sum_probs=54.3

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ++|++|+|++|.|+..  .+..+..+++|++|+| +|+++. ..+.....+++|++|+|++|.+..-+...   +..+++
T Consensus        30 ~~l~~L~L~~N~i~~~--~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~N~l~~~~~~~---~~~l~~  103 (170)
T 3g39_A           30 TTTQVLYLYDNQITKL--EPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLKSIPRGA---FDNLKS  103 (170)
T ss_dssp             TTCSEEECCSSCCCCC--CTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT---TTTCTT
T ss_pred             CCCcEEEcCCCcCCcc--ChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCCCccCEeCHHH---hcCCCC
Confidence            5677777777777743  2445666777777777 477762 22333356677777777666664433332   556777


Q ss_pred             CceeeecCCCCCCc
Q psy9363          99 LSSLRFTKNPILAE  112 (421)
Q Consensus        99 L~~L~l~~N~l~~~  112 (421)
                      |++|+|++||+.-.
T Consensus       104 L~~L~L~~N~~~c~  117 (170)
T 3g39_A          104 LTHIWLLNNPWDCA  117 (170)
T ss_dssp             CCEEECCSSCBCTT
T ss_pred             CCEEEeCCCCCCCC
Confidence            77777777776544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=1.3e-08  Score=97.50  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=52.7

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCc-EEECcCCCCCCCCcccccCcccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLE-ELYLQENNIVDWGEVNALGSLPNLK  399 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~-~L~Ls~N~l~~~~~~~~l~~l~~L~  399 (421)
                      ++|+.++|++|.++ .+.  ..+..+++ +.++|++| ++.|+... ..+.+|+ .+++++ .++.++ ..+|..+++|+
T Consensus       226 ~~L~~l~L~~n~i~~I~~--~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~-~~aF~~c~~L~  300 (329)
T 3sb4_A          226 PNLVSLDISKTNATTIPD--FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE-FGAFMGCDNLR  300 (329)
T ss_dssp             TTCCEEECTTBCCCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC-TTTTTTCTTEE
T ss_pred             CCCeEEECCCCCcceecH--hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc-hhhhhCCccCC
Confidence            66777777776666 332  44555666 67777666 66666543 5666676 777766 555544 44666677777


Q ss_pred             ccccccccCcccC
Q psy9363         400 YLNLASTNLRNIK  412 (421)
Q Consensus       400 ~L~Ls~N~l~~i~  412 (421)
                      .++++.|+++.|+
T Consensus       301 ~l~l~~n~i~~I~  313 (329)
T 3sb4_A          301 YVLATGDKITTLG  313 (329)
T ss_dssp             EEEECSSCCCEEC
T ss_pred             EEEeCCCccCccc
Confidence            7777777766654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.76  E-value=1.5e-09  Score=115.31  Aligned_cols=111  Identities=17%  Similarity=0.115  Sum_probs=86.7

Q ss_pred             hHHhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHH
Q psy9363          13 DEIEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGS   91 (421)
Q Consensus        13 ~~~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~   91 (421)
                      .+....+++|+.|||++|.|+.   ++..+..+++|++|+| +|+++  .+|..++.+++|++|+|++|.++ .++..  
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~~---l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~--  288 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIFN---ISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAE--  288 (727)
T ss_dssp             -----CCCCCCEEECTTSCCSC---CCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSS--
T ss_pred             hhhhccCCCCcEEECCCCCCCC---CChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChh--
Confidence            3445567899999999999985   4555668999999999 58888  67888889999999999888775 43333  


Q ss_pred             HHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccCh
Q psy9363          92 LLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        92 ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                       +..|++|++|+|++|.|...       +..++.+++|++|+++....
T Consensus       289 -~~~l~~L~~L~L~~N~l~~l-------p~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          289 -LGSCFQLKYFYFFDNMVTTL-------PWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             -GGGGTTCSEEECCSSCCCCC-------CSSTTSCTTCCCEECTTSCC
T ss_pred             -hcCCCCCCEEECCCCCCCcc-------ChhhhcCCCccEEeCCCCcc
Confidence             66799999999999998432       34588999999999986544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.70  E-value=2e-08  Score=96.83  Aligned_cols=90  Identities=16%  Similarity=0.108  Sum_probs=70.7

Q ss_pred             CCchhhhcCCCCCccEEEeeC-cccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCc
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGN-MGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGE  388 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~-N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~  388 (421)
                      .+|. +..+  ++|+.|+|++ |.|+ .+  +..+..+++ +.|+|++|+|+++++.. ..+++|+.|+|++|+|+.++ 
T Consensus        23 ~ip~-l~~~--~~L~~L~l~~~n~l~~~~--~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-   96 (347)
T 2ifg_A           23 SLHH-LPGA--ENLTELYIENQQHLQHLE--LRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-   96 (347)
T ss_dssp             TTTT-SCSC--SCCSEEECCSCSSCCEEC--GGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-
T ss_pred             ccCC-CCCC--CCeeEEEccCCCCCCCcC--hhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeC-
Confidence            3566 7777  8899999986 9988 32  245677888 99999999999887654 78899999999999997765 


Q ss_pred             ccccCccccccccccccccCc
Q psy9363         389 VNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       389 ~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      +..+..++ |+.|+|++|++.
T Consensus        97 ~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           97 WKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             STTTCSCC-CCEEECCSSCCC
T ss_pred             HHHcccCC-ceEEEeeCCCcc
Confidence            44555555 999999999886

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.65  E-value=1.8e-10  Score=102.21  Aligned_cols=101  Identities=26%  Similarity=0.337  Sum_probs=69.5

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~  377 (421)
                      +|+.+++++   ..+| .+..+  ++|+.|+|++|.++ ++   .....+++ ++|+|++|+|+.+| .+..+++|+.|+
T Consensus        49 ~L~~L~ls~n~l~~l~-~~~~l--~~L~~L~l~~n~l~~l~---~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           49 ACKHLALSTNNIEKIS-SLSGM--ENLRILSLGRNLIKKIE---NLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TCSEEECSEEEESCCC-CHHHH--TTCCEEEEEEEEECSCS---SHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEE
T ss_pred             CCCEEECCCCCCcccc-ccccC--CCCCEEECCCCCccccc---chhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEE
Confidence            566666654   3455 66777  78888888888777 32   33334456 77888888887766 356677788888


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCcc
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~  410 (421)
                      |++|+++.++.+..+..+++|+.|++++|+++.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            888887665533467777888888888887765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.46  E-value=1.4e-07  Score=90.85  Aligned_cols=83  Identities=17%  Similarity=0.143  Sum_probs=69.9

Q ss_pred             cEEEeeCc-ccchhhHHHHhccCCC-cEEEccC-CcCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363         327 HTLTLGNM-GYIWADILKLLANFPV-TCLKLPS-NRITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN  402 (421)
Q Consensus       327 ~~L~Ls~N-~l~~~~i~~~~~~l~~-~~L~L~~-N~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  402 (421)
                      ..++++++ .|+  .+|. +..+++ +.|+|++ |+|+.+++. +..+++|+.|+|++|+|+.++ +..|+.+++|+.|+
T Consensus        11 ~~v~~~~~n~l~--~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALD--SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCT--TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCC--ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEe
Confidence            35688888 887  3445 777788 9999996 999998854 589999999999999997765 66889999999999


Q ss_pred             cccccCcccCC
Q psy9363         403 LASTNLRNIKL  413 (421)
Q Consensus       403 Ls~N~l~~i~~  413 (421)
                      |++|+|+.++.
T Consensus        87 l~~N~l~~~~~   97 (347)
T 2ifg_A           87 LSFNALESLSW   97 (347)
T ss_dssp             CCSSCCSCCCS
T ss_pred             CCCCccceeCH
Confidence            99999998653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.41  E-value=5.6e-08  Score=94.89  Aligned_cols=117  Identities=12%  Similarity=0.008  Sum_probs=65.8

Q ss_pred             CCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcc---c-ccccccchhccccccCCcc-hhhHHHH
Q psy9363          19 VPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAH---S-YLAEVVFFVHLGRTLCDED-FVKEGSL   92 (421)
Q Consensus        19 ~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~---~-~~~~~L~~L~L~~~~~~~~-~~~~~~l   92 (421)
                      +++|++|||++|.|++ ..+..++..+++|+.|+| +|.++.......   + ...++|++|+|++|.++.. ...+...
T Consensus       100 ~~~L~~L~Ls~n~l~~-~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          100 RHALDEVNLASCQLDP-AGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SSCEEEEECTTCCCCH-HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCH-HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            3578888888888874 233444445667788888 476652111110   0 1235677777776665332 2233334


Q ss_pred             HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      +..+++|++|+|++|.|....  .......+...++|+.||++...
T Consensus       179 L~~~~~L~~L~Ls~N~l~~~g--~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          179 LAGNTSVTHLSLLHTGLGDEG--LELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHTCSSCCEEECTTSSCHHHH--HHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HhcCCCcCEEeCCCCCCCcHH--HHHHHHHHhcCCCcCeEECCCCC
Confidence            566777777777777763221  11223345566677777776533

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.38  E-value=3.7e-08  Score=91.34  Aligned_cols=81  Identities=25%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             EEeeCcccc-hhhHHHH-hccCCC-cEEEccCCcCcccCC---CCCCCCCCcEEECcCCCCCCCCcccccCccccccccc
Q psy9363         329 LTLGNMGYI-WADILKL-LANFPV-TCLKLPSNRITTLDS---VPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN  402 (421)
Q Consensus       329 L~Ls~N~l~-~~~i~~~-~~~l~~-~~L~L~~N~l~~l~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~  402 (421)
                      ++++.|..+ +..+..+ ...+|. +.|+|++|+|+.++.   .+..+++|+.|+|++|+|+++.++..+..+ +|++|+
T Consensus       148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~  226 (267)
T 3rw6_A          148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW  226 (267)
T ss_dssp             CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred             ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence            556666555 3333222 255677 777777777776542   124677777777777777766544444444 777777


Q ss_pred             cccccCcc
Q psy9363         403 LASTNLRN  410 (421)
Q Consensus       403 Ls~N~l~~  410 (421)
                      |++|+++.
T Consensus       227 L~~Npl~~  234 (267)
T 3rw6_A          227 LDGNSLCD  234 (267)
T ss_dssp             CTTSTTGG
T ss_pred             ccCCcCcc
Confidence            77777765

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.38  E-value=3e-07  Score=80.50  Aligned_cols=124  Identities=10%  Similarity=0.068  Sum_probs=88.8

Q ss_pred             HhhhCCCCcEEECCCC-CCCCh--hhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccccccCCcc-h
Q psy9363          15 IEQAVPFIEDLDLSRN-LLASW--FAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLGRTLCDED-F   86 (421)
Q Consensus        15 ~~~~~~~L~~L~Ls~N-~ls~~--~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~~~~~~~~-~   86 (421)
                      +...+++|++|+|++| .|++.  ..+...+...++|++|+| .|.+....   +...+...++|++|+|++|.++.. .
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4456789999999999 99963  345667777899999999 58887211   112233446899999998877543 3


Q ss_pred             hhHHHHHhhCCCCceeee--cCCCCCCccccchhHHHHHHhccCceeccCCccChh
Q psy9363          87 VKEGSLLHYLPKLSSLRF--TKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQ  140 (421)
Q Consensus        87 ~~~~~ll~~l~~L~~L~l--~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~  140 (421)
                      ..+...+...+.|++|+|  ++|.+....  .......+...++|+.|+++.....
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g--~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHH--HHHHHHHHHhCCCcCEEeccCCCCC
Confidence            344445788899999999  899985432  1223446777799999999866544

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.22  E-value=1.4e-06  Score=84.84  Aligned_cols=90  Identities=18%  Similarity=0.077  Sum_probs=39.3

Q ss_pred             CCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-hhhHHHH
Q psy9363          20 PFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-FVKEGSL   92 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~~~l   92 (421)
                      ++|++|+|++|.|++  ...++..+..+++|++|+| .|.+...   .++..+...++|++|+|++|.++.. ...+...
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            445555555555542  1123333444555555555 2444310   0111122334555555555444322 1222223


Q ss_pred             HhhCCCCceeeecCCCC
Q psy9363          93 LHYLPKLSSLRFTKNPI  109 (421)
Q Consensus        93 l~~l~~L~~L~l~~N~l  109 (421)
                      +...++|++|+|++|+|
T Consensus       235 L~~~~~L~~L~Ls~N~i  251 (372)
T 3un9_A          235 AREHPSLELLHLYFNEL  251 (372)
T ss_dssp             HHHCSSCCEEECTTSSC
T ss_pred             HHhCCCCCEEeccCCCC
Confidence            44455555555555555

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.92  E-value=3.4e-06  Score=73.69  Aligned_cols=93  Identities=9%  Similarity=0.064  Sum_probs=69.7

Q ss_pred             hhCCCCcEEECCCCCCCChh--hHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhcc--ccccCCcc-hh
Q psy9363          17 QAVPFIEDLDLSRNLLASWF--AVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHL--GRTLCDED-FV   87 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~--~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L--~~~~~~~~-~~   87 (421)
                      ..+++|++|||++|.|++-+  .+...+...++|++|+| +|.+....   +...+...+.|++|+|  +.|.++.. ..
T Consensus        62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred             HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence            34688999999999999633  45666777899999999 58887311   2223445578999999  66777443 33


Q ss_pred             hHHHHHhhCCCCceeeecCCCC
Q psy9363          88 KEGSLLHYLPKLSSLRFTKNPI  109 (421)
Q Consensus        88 ~~~~ll~~l~~L~~L~l~~N~l  109 (421)
                      .+...+...+.|++|+|++|.+
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeccCCCC
Confidence            4555588899999999999997

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.50  E-value=5.9e-05  Score=73.04  Aligned_cols=65  Identities=12%  Similarity=0.089  Sum_probs=30.5

Q ss_pred             cccccchhccccccCCcchh-hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCC
Q psy9363          68 LAEVVFFVHLGRTLCDEDFV-KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGS  135 (421)
Q Consensus        68 ~~~~L~~L~L~~~~~~~~~~-~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s  135 (421)
                      .+++|++|+|.+|.+..... .+.. ...+|+|++|+|+.|.+....  .......+..+++|+.|+++
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~-a~~~~~L~~LdLs~n~L~d~G--~~~L~~~L~~l~~L~~L~L~  315 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLE-SDILPQLETMDISAGVLTDEG--ARLLLDHVDKIKHLKFINMK  315 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHH-CSSGGGCSEEECCSSCCBHHH--HHHHHTTHHHHTTCSEEECC
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHh-CccCCCCCEEECCCCCCChHH--HHHHHhhcccCCcceEEECC
Confidence            35666666666555432211 1111 124566666666666653211  00111123456666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.32  E-value=9.1e-05  Score=63.80  Aligned_cols=104  Identities=13%  Similarity=0.080  Sum_probs=65.2

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-c-ccCCCCCCccccc----ccccchhcccccc-CCcchhhHHHH
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-I-RLKSSSAPAHSYL----AEVVFFVHLGRTL-CDEDFVKEGSL   92 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N-~l~~~~~p~~~~~----~~~L~~L~L~~~~-~~~~~~~~~~l   92 (421)
                      ..|++||||++.|++- ++. .+..+++|++|+|+ . +++...+. .++.    +++|++|+|++|. ++.  ..+.. 
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~-~L~~~~~L~~L~L~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl~~-  134 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFD-HMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTD--KGIIA-  134 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGG-GGTTCSCCCEEEEESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCH--HHHHH-
T ss_pred             ceEeEEeCcCCCccHH-HHH-HhcCCCCCCEEEeCCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCH--HHHHH-
Confidence            3699999999999863 343 35789999999994 4 45521111 1222    3579999998763 432  23334 


Q ss_pred             HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCcee
Q psy9363          93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKL  131 (421)
Q Consensus        93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~  131 (421)
                      +..+++|++|++++.+-....  .......-..+|++++
T Consensus       135 L~~~~~L~~L~L~~c~~Itd~--gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          135 LHHFRNLKYLFLSDLPGVKEK--EKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             GGGCTTCCEEEEESCTTCCCH--HHHHHHHHHHCTTCEE
T ss_pred             HhcCCCCCEEECCCCCCCCch--HHHHHHHHHHCCCcEE
Confidence            667999999999998732221  1223344556677653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.16  E-value=0.00054  Score=55.97  Aligned_cols=33  Identities=27%  Similarity=0.227  Sum_probs=19.2

Q ss_pred             cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCC
Q psy9363         351 TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNI  383 (421)
Q Consensus       351 ~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l  383 (421)
                      +.|+|++|+|+.|+... ..+++|+.|+|++|.+
T Consensus        34 ~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           34 TELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             SEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            56666666666655443 4455666666666655

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.13  E-value=0.00034  Score=66.51  Aligned_cols=94  Identities=16%  Similarity=0.144  Sum_probs=75.3

Q ss_pred             CCCccCCCC---CC-CchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-c-EEEccCCcCcccCCCC-CCCCCCc
Q psy9363         303 NTNKLPIPN---DT-SGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-T-CLKLPSNRITTLDSVP-GMFSSLE  374 (421)
Q Consensus       303 ~L~~l~l~~---~~-~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~-~L~L~~N~l~~l~~~~-~~l~~L~  374 (421)
                      +|+.++|++   .. .+..|..+  ++|+.++|.+| ++ .+.  ..+..+++ + .+++++ .++.|+... ..+++|+
T Consensus       227 ~L~~l~L~~n~i~~I~~~aF~~~--~~L~~l~l~~n-i~~I~~--~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          227 NLVSLDISKTNATTIPDFTFAQK--KYLLKIKLPHN-LKTIGQ--RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             TCCEEECTTBCCCEECTTTTTTC--TTCCEEECCTT-CCEECT--TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             CCeEEECCCCCcceecHhhhhCC--CCCCEEECCcc-cceehH--HHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            677777764   22 34568899  99999999998 65 443  56778888 8 999998 888887554 8899999


Q ss_pred             EEECcCCCCCCCCcccccCcccccccccc
Q psy9363         375 ELYLQENNIVDWGEVNALGSLPNLKYLNL  403 (421)
Q Consensus       375 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~L  403 (421)
                      .+++++|.++.++ ...|.++++|+.++.
T Consensus       301 ~l~l~~n~i~~I~-~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKITTLG-DELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCCEEC-TTTTCTTCCCCEEEC
T ss_pred             EEEeCCCccCccc-hhhhcCCcchhhhcc
Confidence            9999999998876 568999999998763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.00  E-value=0.0016  Score=57.01  Aligned_cols=122  Identities=7%  Similarity=0.037  Sum_probs=81.8

Q ss_pred             hhCCCCcEEECCCC-CCCChh--hHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-hhh
Q psy9363          17 QAVPFIEDLDLSRN-LLASWF--AVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-FVK   88 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N-~ls~~~--~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~~~   88 (421)
                      ..-+.|++|+|++| .|.+-+  .+...+..=+.|+.|+| .|.+...   .+...+..=+.|++|+|++|.++.. ...
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            33568999999996 898532  45666777789999999 5888721   1111122335799999998888544 344


Q ss_pred             HHHHHhhCCCCceeeecCC---CCCCccccchhHHHHHHhccCceeccCCccChh
Q psy9363          89 EGSLLHYLPKLSSLRFTKN---PILAEERVVSSREKTIARLGGLKLLNGSAIERQ  140 (421)
Q Consensus        89 ~~~ll~~l~~L~~L~l~~N---~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~  140 (421)
                      +...+..=+.|++|+|++|   .+....  ......++..-++|+.|++......
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g--~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQV--EMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHH--HHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHH--HHHHHHHHHhCCCcCeEeccCCCcc
Confidence            5455777788999999865   432211  2234456777789999998765544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=96.87  E-value=0.00051  Score=66.38  Aligned_cols=82  Identities=13%  Similarity=0.105  Sum_probs=43.5

Q ss_pred             hCCCCcEEECCCCCCC----Ch---hhHHHHHhcCCCCceeecc-cccCCCCCCcccccccccchhccccccCCcchhhH
Q psy9363          18 AVPFIEDLDLSRNLLA----SW---FAVGEITCQLKHLRHLNLR-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKE   89 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls----~~---~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~   89 (421)
                      .+++|+.|.+..+.+.    +|   +.+...+..+|+|+.|.|+ |. . ..++. + ..++|++|+|..|.+...  .+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~-~-l~l~~-~-~~~~L~~L~L~~~~l~~~--~l  210 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN-N-LSIGK-K-PRPNLKSLEIISGGLPDS--VV  210 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCB-T-CBCCS-C-BCTTCSEEEEECSBCCHH--HH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCC-C-ceecc-c-cCCCCcEEEEecCCCChH--HH
Confidence            4578888887665432    11   2355666777888888883 41 1 12232 1 256677777654444222  11


Q ss_pred             HHH-HhhCCCCceeeec
Q psy9363          90 GSL-LHYLPKLSSLRFT  105 (421)
Q Consensus        90 ~~l-l~~l~~L~~L~l~  105 (421)
                      ..+ ...+|+|++|+|+
T Consensus       211 ~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHSBCTTCCEEEEE
T ss_pred             HHHHHccCCCCcEEEEe
Confidence            111 1246666666664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.79  E-value=0.0017  Score=63.66  Aligned_cols=102  Identities=14%  Similarity=0.181  Sum_probs=68.0

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc------hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCC
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI------WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFS  371 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~------~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~  371 (421)
                      +|+.+.+++   ...+..|..+  ++|+.+++.+|.+.      .+.  ..+..+++ +.+.|. |.++.|+... ..+.
T Consensus       249 ~L~~i~lp~~i~~I~~~aF~~c--~~L~~l~l~~~~~~~~~~~~I~~--~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~  323 (401)
T 4fdw_A          249 GITTVKLPNGVTNIASRAFYYC--PELAEVTTYGSTFNDDPEAMIHP--YCLEGCPKLARFEIP-ESIRILGQGLLGGNR  323 (401)
T ss_dssp             CCSEEEEETTCCEECTTTTTTC--TTCCEEEEESSCCCCCTTCEECT--TTTTTCTTCCEECCC-TTCCEECTTTTTTCC
T ss_pred             CccEEEeCCCccEEChhHhhCC--CCCCEEEeCCccccCCcccEECH--HHhhCCccCCeEEeC-CceEEEhhhhhcCCC
Confidence            555555543   1224567778  88888888887763      222  45566777 888887 4577776544 6678


Q ss_pred             CCcEEECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         372 SLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       372 ~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      +|+.++|..| ++.+. ..+|..+ +|+.+++++|.+..+.
T Consensus       324 ~L~~l~lp~~-l~~I~-~~aF~~~-~L~~l~l~~n~~~~l~  361 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQIN-FSAFNNT-GIKEVKVEGTTPPQVF  361 (401)
T ss_dssp             SCCEEEECTT-CCEEC-TTSSSSS-CCCEEEECCSSCCBCC
T ss_pred             CccEEEECcc-ccEEc-HHhCCCC-CCCEEEEcCCCCcccc
Confidence            8888888655 55554 4567777 8888888888776543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.61  E-value=0.00033  Score=60.29  Aligned_cols=82  Identities=20%  Similarity=0.265  Sum_probs=55.5

Q ss_pred             CccEEEeeCcccchhhHHHHhccCCC-cEEEccCCc-Ccc--cCCCCCC----CCCCcEEECcCCC-CCCCCcccccCcc
Q psy9363         325 HIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNR-ITT--LDSVPGM----FSSLEELYLQENN-IVDWGEVNALGSL  395 (421)
Q Consensus       325 ~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~-l~~--l~~~~~~----l~~L~~L~Ls~N~-l~~~~~~~~l~~l  395 (421)
                      +|+.|||+++.++-..+ ..+..+++ +.|+|+++. |++  +.. +..    .++|++|+|+++. |++-. +..+..+
T Consensus        62 ~L~~LDLs~~~Itd~GL-~~L~~~~~L~~L~L~~C~~ItD~gL~~-L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~  138 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLER-LSQLENLQKSMLEMEIISCGNVTDKG-IIALHHF  138 (176)
T ss_dssp             CEEEEEEESCCCCGGGG-GGGTTCSCCCEEEEESCTTCCHHHHHH-HHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGC
T ss_pred             eEeEEeCcCCCccHHHH-HHhcCCCCCCEEEeCCCCccCHHHHHH-HHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcC
Confidence            68888888888872111 33467788 888888874 663  211 222    3478888998875 76543 4567788


Q ss_pred             cccccccccccc-Cc
Q psy9363         396 PNLKYLNLASTN-LR  409 (421)
Q Consensus       396 ~~L~~L~Ls~N~-l~  409 (421)
                      ++|+.|+|+++. ++
T Consensus       139 ~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          139 RNLKYLFLSDLPGVK  153 (176)
T ss_dssp             TTCCEEEEESCTTCC
T ss_pred             CCCCEEECCCCCCCC
Confidence            888888888875 44

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=96.24  E-value=0.0057  Score=59.85  Aligned_cols=82  Identities=15%  Similarity=0.120  Sum_probs=43.1

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCc-----ccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRIT-----TLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLP  396 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~-----~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  396 (421)
                      .+|+.+.|.++--+.+.  ..+..+++ +.+.+.+|.+.     .|+... ..+++|+.++|. +.++.+. ...|..++
T Consensus       248 ~~L~~i~lp~~i~~I~~--~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~-~~aF~~c~  323 (401)
T 4fdw_A          248 SGITTVKLPNGVTNIAS--RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILG-QGLLGGNR  323 (401)
T ss_dssp             CCCSEEEEETTCCEECT--TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEEC-TTTTTTCC
T ss_pred             CCccEEEeCCCccEECh--hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEh-hhhhcCCC
Confidence            34555555333222222  33445555 66666666654     344332 556666666666 3354544 34566667


Q ss_pred             cccccccccccCcc
Q psy9363         397 NLKYLNLASTNLRN  410 (421)
Q Consensus       397 ~L~~L~Ls~N~l~~  410 (421)
                      +|+.++|..| ++.
T Consensus       324 ~L~~l~lp~~-l~~  336 (401)
T 4fdw_A          324 KVTQLTIPAN-VTQ  336 (401)
T ss_dssp             SCCEEEECTT-CCE
T ss_pred             CccEEEECcc-ccE
Confidence            7777776544 443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.67  E-value=0.011  Score=48.08  Aligned_cols=56  Identities=25%  Similarity=0.313  Sum_probs=44.6

Q ss_pred             cEEEccCCcCc--ccCCCCCCCCCCcEEECcCCCCCCCCcccccCccccccccccccccCc
Q psy9363         351 TCLKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLR  409 (421)
Q Consensus       351 ~~L~L~~N~l~--~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~  409 (421)
                      ..++-+++.++  .+|..  -..+|+.|+|++|+|+.++ ...|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence            46888888888  78753  2447899999999998876 567788889999999999773

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=95.34  E-value=0.0093  Score=52.11  Aligned_cols=104  Identities=17%  Similarity=0.161  Sum_probs=61.4

Q ss_pred             CCCccCCCC-CCCc--------hhhhcCCCCCccEEEeeCcccc---hhhHHHHhccCCC-cEEEccCCcCcc-----cC
Q psy9363         303 NTNKLPIPN-DTSG--------VMEQIFPQGHIHTLTLGNMGYI---WADILKLLANFPV-TCLKLPSNRITT-----LD  364 (421)
Q Consensus       303 ~L~~l~l~~-~~~~--------~~~~~l~~~~L~~L~Ls~N~l~---~~~i~~~~~~l~~-~~L~L~~N~l~~-----l~  364 (421)
                      .|+.+.|++ ..+.        ..+..-  +.|+.|+|++|.|.   -..+...+..=.. ++|+|++|+|+.     |-
T Consensus        42 ~L~~L~L~~nn~igd~ga~~la~aL~~N--~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           42 DLKEVNINNMKRVSKERIRSLIEAACNS--KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             SCCEEECTTCCSSCHHHHHHHHHHHTTC--SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CccEEECCCCCCCCHHHHHHHHHHHhhC--CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            566666653 1222        223444  78888999999888   2234444444455 888999998873     21


Q ss_pred             CCCCCCCCCcEEECcCCCC-CCCC-----cccccCccccccccccccccC
Q psy9363         365 SVPGMFSSLEELYLQENNI-VDWG-----EVNALGSLPNLKYLNLASTNL  408 (421)
Q Consensus       365 ~~~~~l~~L~~L~Ls~N~l-~~~~-----~~~~l~~l~~L~~L~Ls~N~l  408 (421)
                      ..+..-..|++|+|++|.. .-+.     ....+..-+.|+.|+++.|.+
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            1124445688899886533 1111     112344456788888887764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=93.27  E-value=0.11  Score=49.67  Aligned_cols=98  Identities=15%  Similarity=0.111  Sum_probs=64.0

Q ss_pred             CCCccCCCC--C-CCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEE
Q psy9363         303 NTNKLPIPN--D-TSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~--~-~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~  377 (421)
                      .|+.+.++.  . .....+..+  .+|+.+.+..+.-..+.  ..+..+++ +.+.+.++.++.|+... ..+.+|+.+.
T Consensus       241 ~L~~i~lp~~v~~I~~~aF~~~--~~l~~i~l~~~i~~i~~--~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~  316 (379)
T 4h09_A          241 ALDEIAIPKNVTSIGSFLLQNC--TALKTLNFYAKVKTVPY--LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVT  316 (379)
T ss_dssp             SCCEEEECTTCCEECTTTTTTC--TTCCEEEECCCCSEECT--TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEE
T ss_pred             cceEEEcCCCccEeCcccccee--ehhccccccccceeccc--cccccccccccccccccccceehhhhhcCCCCCCEEE
Confidence            555555543  1 123446667  78888888655333322  34566677 88888888888877654 6778888888


Q ss_pred             CcCCCCCCCCcccccCccccccccccccc
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLAST  406 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N  406 (421)
                      |..+ ++.+. ..+|.++.+|+.+.+..+
T Consensus       317 lp~~-l~~I~-~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          317 LPTA-LKTIQ-VYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CCTT-CCEEC-TTTTTTCTTCCCCCCCTT
T ss_pred             cCcc-ccEEH-HHHhhCCCCCCEEEECCc
Confidence            8755 55554 456778888888877654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=92.58  E-value=0.23  Score=47.95  Aligned_cols=102  Identities=7%  Similarity=0.074  Sum_probs=58.4

Q ss_pred             hCC-CCcEEECCCCCCCChhhHHHHHhcCCCCceeecc-cc---cCCCCCCcccccccccchhccccccCCcchhhHHHH
Q psy9363          18 AVP-FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNLR-IR---LKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSL   92 (421)
Q Consensus        18 ~~~-~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L~-N~---l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~l   92 (421)
                      .|. .|+.+.+..+ ++.++.  ..+..+++|+.+.+. |.   +....-- ....+.+|+.+.+.+++..-...    .
T Consensus        61 ~~~~~L~sI~iP~s-vt~Ig~--~AF~~C~~L~~i~~~~n~p~~l~~Ig~~-aF~~c~~L~~i~~~~~~~~I~~~----a  132 (394)
T 4gt6_A           61 NYKYVLTSVQIPDT-VTEIGS--NAFYNCTSLKRVTIQDNKPSCVKKIGRQ-AFMFCSELTDIPILDSVTEIDSE----A  132 (394)
T ss_dssp             TCCSCCCEEEECTT-CCEECT--TTTTTCTTCCEEEEGGGCCCCCCEECTT-TTTTCTTCCBCGGGTTCSEECTT----T
T ss_pred             CCCCcCEEEEECCC-eeEEhH--HHhhCCccCceEeecCCCCCeeeEechh-hchhcccceeeccCCccceehhh----h
Confidence            453 5889998765 554442  345678899999884 42   2211111 22356778877775554321111    1


Q ss_pred             HhhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccC
Q psy9363          93 LHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNG  134 (421)
Q Consensus        93 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~  134 (421)
                      +..+.+|+.+.+..+--       ......+..+..|+.+..
T Consensus       133 F~~c~~L~~i~lp~~~~-------~I~~~~F~~c~~L~~i~~  167 (394)
T 4gt6_A          133 FHHCEELDTVTIPEGVT-------SVADGMFSYCYSLHTVTL  167 (394)
T ss_dssp             TTTCTTCCEEECCTTCC-------EECTTTTTTCTTCCEEEC
T ss_pred             hhhhcccccccccceee-------eecccceecccccccccc
Confidence            55688888888865531       222345666777776655

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=88.55  E-value=0.43  Score=45.93  Aligned_cols=82  Identities=10%  Similarity=0.135  Sum_probs=38.3

Q ss_pred             hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSL  395 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  395 (421)
                      +..+  ++|+.+.+..+.-..+.  ..+..+.+ +.+.|..+ ++.|.... ..+.+|+.+.+..+ ++.+. ..+|.++
T Consensus       284 F~~c--~~L~~i~l~~~i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~-~~aF~~C  356 (394)
T 4gt6_A          284 FMNC--PALQDIEFSSRITELPE--SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIP-ESAFSNC  356 (394)
T ss_dssp             TTTC--TTCCEEECCTTCCEECT--TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCC-GGGGTTC
T ss_pred             cccc--cccccccCCCcccccCc--eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEh-HhHhhCC
Confidence            4445  55555555432211222  23344444 55555433 44444322 45555665555433 33433 3345555


Q ss_pred             ccccccccccc
Q psy9363         396 PNLKYLNLAST  406 (421)
Q Consensus       396 ~~L~~L~Ls~N  406 (421)
                      ++|+.+++.+|
T Consensus       357 ~~L~~i~~~~~  367 (394)
T 4gt6_A          357 TALNNIEYSGS  367 (394)
T ss_dssp             TTCCEEEESSC
T ss_pred             CCCCEEEECCc
Confidence            55555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.90  E-value=0.53  Score=45.28  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=53.3

Q ss_pred             hhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGS  394 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~  394 (421)
                      .+..+  .+|+.+.+.++--..+.  ..+..+.+ +.++|..+ ++.|.... ..+.+|+.+++..| ++.+. ..+|.+
T Consensus       292 ~F~~~--~~L~~i~l~~~i~~I~~--~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~  364 (394)
T 4fs7_A          292 TFYGC--SSLTEVKLLDSVKFIGE--EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG-ANAFQG  364 (394)
T ss_dssp             TTTTC--TTCCEEEECTTCCEECT--TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTBTT
T ss_pred             ccccc--ccccccccccccceech--hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh-HHHhhC
Confidence            45566  77777777655222332  34555666 77777643 66665543 66778888888766 55554 456777


Q ss_pred             cccccccccccc
Q psy9363         395 LPNLKYLNLAST  406 (421)
Q Consensus       395 l~~L~~L~Ls~N  406 (421)
                      +++|+.+++..+
T Consensus       365 C~~L~~i~lp~~  376 (394)
T 4fs7_A          365 CINLKKVELPKR  376 (394)
T ss_dssp             CTTCCEEEEEGG
T ss_pred             CCCCCEEEECCC
Confidence            888888877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=86.82  E-value=0.88  Score=43.32  Aligned_cols=85  Identities=12%  Similarity=0.074  Sum_probs=63.1

Q ss_pred             hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      ..+..+  ..|+.+.+..+--+.+.  ..+..... +.+.+..+ ++.++... ..+.+|+.+.+.++.++.++ ...|.
T Consensus       234 ~~f~~~--~~L~~i~lp~~v~~I~~--~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-~~aF~  307 (379)
T 4h09_A          234 GAFYGM--KALDEIAIPKNVTSIGS--FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE-PRVFM  307 (379)
T ss_dssp             TTTTTC--SSCCEEEECTTCCEECT--TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC-TTTTT
T ss_pred             ccccCC--ccceEEEcCCCccEeCc--cccceeehhcccccccc-ceeccccccccccccccccccccccceeh-hhhhc
Confidence            456778  89999999877333332  34556667 88888654 67776544 78899999999999987766 56788


Q ss_pred             ccccccccccccc
Q psy9363         394 SLPNLKYLNLAST  406 (421)
Q Consensus       394 ~l~~L~~L~Ls~N  406 (421)
                      ++.+|+.+.|..+
T Consensus       308 ~c~~L~~i~lp~~  320 (379)
T 4h09_A          308 DCVKLSSVTLPTA  320 (379)
T ss_dssp             TCTTCCEEECCTT
T ss_pred             CCCCCCEEEcCcc
Confidence            8999999888643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.23  E-value=1.7  Score=41.73  Aligned_cols=86  Identities=16%  Similarity=0.168  Sum_probs=63.1

Q ss_pred             hhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         316 VMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       316 ~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      ..+..+  ..++.+.+..+.+. .   ..+....+ +.+.+..+ ++.|+... ..+.+|+.++|..+ ++.+. ..+|.
T Consensus       270 ~~F~~~--~~l~~~~~~~~~i~-~---~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~  340 (394)
T 4fs7_A          270 SLFYNC--SGLKKVIYGSVIVP-E---KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG-KRSFR  340 (394)
T ss_dssp             CTTTTC--TTCCEEEECSSEEC-T---TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC-TTTTT
T ss_pred             cccccc--cccceeccCceeec-c---ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh-HHhcc
Confidence            456677  88888888777664 1   23455667 88888765 77777654 78899999999755 66655 45788


Q ss_pred             ccccccccccccccCccc
Q psy9363         394 SLPNLKYLNLASTNLRNI  411 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i  411 (421)
                      ++.+|+.+++..| ++.|
T Consensus       341 ~c~~L~~i~lp~~-l~~I  357 (394)
T 4fs7_A          341 GCTSLSNINFPLS-LRKI  357 (394)
T ss_dssp             TCTTCCEECCCTT-CCEE
T ss_pred             CCCCCCEEEECcc-ccEe
Confidence            9999999999876 6554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	421
d1ixda_	104	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	3e-20
d1whha_	102	b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR	6e-20
d2cp0a1	83	b.34.10.1 (A:7-89) CLIP170-related 59kda protein C	3e-19
d2e3ha1	71	b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapien	6e-19
d2cowa1	88	b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Hu	1e-18
d2e3ia1	71	b.34.10.1 (A:58-128) Restin {Human (Homo sapiens)	2e-18
d1whja_	102	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	2e-18
d2coza1	109	b.34.10.1 (A:8-116) Centrosome-associated protein	3e-18
d2cp6a1	160	b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [	1e-17
d1whka_	91	b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse	2e-17
d1tova_	98	b.34.10.1 (A:) Cytoskeleton-associated protein F53	3e-17
d2hqha1	72	b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapien	4e-17
d1whga_	113	b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1	1e-16
d1whma_	92	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	6e-16
d1whla_	95	b.34.10.1 (A:) Cylindromatosis tumour-suppressor C	1e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	6e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.004
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.004

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.4 bits (206), Expect = 3e-20
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 188 RVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMR 247
            V ++    G IR++G   G   V  G++ + E  G  DG+  G +YF         F++
Sbjct: 25  EVKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCAL-KKALFVK 83

Query: 248 RDKLNFGSSF 257
                  S F
Sbjct: 84  LKSCRPDSRF 93

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 82.2 bits (203), Expect = 6e-20
 Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 184 DIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           ++G +V  +   +G +R+ G  +   G WYGI+ D +  GKHDGS  GV+YF T +   G
Sbjct: 27  EVGDQVLVAGQKQGIVRFYGKTDFAPGYWYGIELD-QPTGKHDGSVFGVRYF-TCAPRHG 84

Query: 244 SFMRRDKLNFGSSF 257
            F    ++    S 
Sbjct: 85  VFAPASRIQRIGSG 98

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV       GT+R+ G+ E   G W G++ D E  GK+DGS  GV+YF       G 
Sbjct: 13  LGDRVLLDGQKTGTLRFCGTTEFASGQWVGVELD-EPEGKNDGSVGGVRYFICPP-KQGL 70

Query: 245 FMRRDKLNFGS 255
           F    K++   
Sbjct: 71  FASVSKISKAV 81

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (193), Expect = 6e-19
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV       G +R++G  +  +G W G++ D E  GK+DG+  G +YF       G 
Sbjct: 3   IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYF-QCQPKYGL 60

Query: 245 FMRRDKL 251
           F    K+
Sbjct: 61  FAPVHKV 67

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.3 bits (193), Expect = 1e-18
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 2/71 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
            G  V       G +RYVG  +  +G W G++ D    GK+DGS  G +YF  +    G 
Sbjct: 20  EGEFVTVGAHKTGVVRYVGPADFQEGTWVGVELD-LPSGKNDGSIGGKQYFRCNP-GYGL 77

Query: 245 FMRRDKLNFGS 255
            +R  ++   +
Sbjct: 78  LVRPSRVRRAT 88

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (190), Expect = 2e-18
 Identities = 26/67 (38%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV  +    G I+++G  +   G W GI  D E  GK+DGS  GV+YF       G 
Sbjct: 3   VGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLD-EPIGKNDGSVAGVRYF-QCEPLKGI 60

Query: 245 FMRRDKL 251
           F R  KL
Sbjct: 61  FTRPSKL 67

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.6 bits (191), Expect = 2e-18
 Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           +G RV  +    GT+R+ G+ E   G W GI+ D E  GK++GS   V+YF   +   G 
Sbjct: 27  LGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELD-EPEGKNNGSVGRVQYF-KCAPKYGI 84

Query: 245 FMRRDKL 251
           F    K+
Sbjct: 85  FAPLSKI 91

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]} Length = 109

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.6 bits (191), Expect = 3e-18
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTH 238
           ++ +  IG RV       G +R+ G     +G W G++ D +  G ++G+++G+ YF   
Sbjct: 21  ELFDFHIGDRVLIGNVQPGILRFKGETSFAKGFWAGVELD-KPEGNNNGTYDGIAYF-EC 78

Query: 239 STTSGSFMRRDKLNFGSSFMEALHRKYVETDNE 271
               G F    K++      +     YV+ + +
Sbjct: 79  KEKHGIFAPPQKISHIPENFD----DYVDINED 107

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]} Length = 160

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.4 bits (190), Expect = 1e-17
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 185 IGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGS 244
           IG RV       G +R++G  +  +G W G++ D E  GK+DG+  G +YF       G 
Sbjct: 34  IGDRVLVGGTKAGVVRFLGETDFAKGEWCGVELD-EPLGKNDGAVAGTRYFQCQP-KYGL 91

Query: 245 FMRRDKLNFGSS 256
           F    K+     
Sbjct: 92  FAPVHKVTKIGF 103

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 91

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (184), Expect = 2e-17
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 185 IGLRVC-DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
            G +V   S     T+RYVG  +   G+W G++     +GK+DG+    +YF T     G
Sbjct: 15  EGSQVLLTSSNEMATVRYVGPTDFASGIWLGLELR-SAKGKNDGAVGDKRYF-TCKPNYG 72

Query: 244 SFMRRDKLNF 253
             +R  ++ +
Sbjct: 73  VLVRPSRVTY 82

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 74.5 bits (183), Expect = 3e-17
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 6/74 (8%)

Query: 185 IGLRVC----DSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHST 240
           +G R           RG + YVG+ +  +GVW G+ +D E  GK+DGS  GV+Y +    
Sbjct: 17  VGNRCEVTVGAQMARRGEVAYVGATKFKEGVWVGVKYD-EPVGKNDGSVAGVRY-FDCDP 74

Query: 241 TSGSFMRRDKLNFG 254
             G F+R   +  G
Sbjct: 75  KYGGFVRPVDVKVG 88

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 4e-17
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 185 IGLRV-CDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSG 243
           +G RV    +GHRGT+ YVG+     G W G+  D E +GK+DG+  G KYF       G
Sbjct: 4   VGSRVEVIGKGHRGTVAYVGATLFATGKWVGVILD-EAKGKNDGTVQGRKYFTCDE-GHG 61

Query: 244 SFMRRDKL 251
            F+R+ ++
Sbjct: 62  IFVRQSQI 69

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.4 bits (180), Expect = 1e-16
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 159 DEKRRAEFLEANPRVGDNYFQVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWD 218
           +EK +A  +    R      +V   D  LR       RGT+ YVG  +   G W G+ +D
Sbjct: 25  EEKAQASAISVGSRC-----EVRAPDHSLR-------RGTVMYVGLTDFKPGYWVGVRYD 72

Query: 219 SETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSS 256
            E  GK+DGS NG +YF   +   G+F++   +  G S
Sbjct: 73  -EPLGKNDGSVNGKRYFECQA-KYGAFVKPSAVTVGDS 108

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.6 bits (173), Expect = 6e-16
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 185 IGLRVC---DSEGHRGTIRYVGSVEG--TQGVWYGIDWDSETRGKHDGSHNGVKYFWTHS 239
           I  RV          GT+ +   + G  + G + G+D D    G  DG  +GV+      
Sbjct: 12  INSRVSLKVGETIESGTVIFCDVLPGKESLGYFVGVDMD-NPIGNWDGRFDGVQLCSFAC 70

Query: 240 TTSGSFMRRDKLNFGSSF 257
             S   +  + +   SS 
Sbjct: 71  VESTILLHINDIIPESSG 88

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 1e-15
 Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)

Query: 184 DIGLRV-----CDSEGHRGTIRYVGSVEGTQ---GVWYGIDWDSETR--GKHDGSHNGVK 233
           D+G  V        E   G +R+ G +   +   G+++G++   E R  G  DG + G +
Sbjct: 9   DVGCPVKVQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQ 68

Query: 234 YFWTHSTTSGSFMRRDKLNFGSS 256
            F       G F+  DKL    S
Sbjct: 69  LFQCDE-DCGVFVALDKLELIES 90

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.4 bits (106), Expect = 8e-06
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 348 FPVTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
             +T L L  N I+ +  V    + L+ L+   N + D   V++L +L N+ +L+     
Sbjct: 307 KNLTYLTLYFNNISDISPV-SSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQ 362

Query: 408 LRNI 411
           + ++
Sbjct: 363 ISDL 366

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 353 LKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
           L   +N+++ + S+    +++  L    N I D   +  L +L  +  L L
Sbjct: 334 LFFANNKVSDVSSL-ANLTNINWLSAGHNQISD---LTPLANLTRITQLGL 380

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 350 VTCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
           VT L+     I ++D V    ++L ++    N + D   +  L +L  L  + 
Sbjct: 46  VTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTD---ITPLKNLTKLVDIL 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 13/113 (11%)

Query: 299 HEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPVTCLKLPSN 358
            E   +      ++         P    +     N      D+   L       L + +N
Sbjct: 240 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSL-----EELNVSNN 294

Query: 359 RITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           ++  L   P +   LE L    N++ +  E        NLK L++    LR  
Sbjct: 295 KLIEL---PALPPRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREF 339

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 357 SNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNL 403
            N+I+ +  +  +  +L E++L+ N I D   V+ L +  NL  + L
Sbjct: 182 DNKISDISPLASL-PNLIEVHLKNNQISD---VSPLANTSNLFIVTL 224

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 5e-04
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 346 ANFP--VTCLKLPSNRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLN 402
            + P     L L +N+IT + D       +L  L L  N I       A   L  L+ L 
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI-SPGAFAPLVKLERLY 85

Query: 403 LASTNLRNI 411
           L+   L+ +
Sbjct: 86  LSKNQLKEL 94

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.5 bits (88), Expect = 6e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 368 GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLAS 405
              + L+ LYL +N+I D   + AL  L NL  L L S
Sbjct: 175 AGLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFS 209

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 12/38 (31%), Positives = 16/38 (42%)

Query: 374 EELYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNI 411
           +EL L  N +     +  L S P L  LNL   +L   
Sbjct: 68  QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.003
 Identities = 11/64 (17%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 353 LKLPSNRIT--TLDSVPGMFSSLEELYLQENNIVDWGE---VNALGSLPNLKYLNLASTN 407
           L +    ++      +  +    + + L +  + +       +AL   P L  LNL S  
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 408 LRNI 411
           L ++
Sbjct: 67  LGDV 70

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (84), Expect = 0.004
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 338 WADILKLLANFPVTCLKLPSNRIT-----TLDSVPGMFSSLEELYLQENNIVDWGEVNAL 392
           WA++L LL       ++L    +T      + S   +  +L EL L+ N + D G V+ +
Sbjct: 19  WAELLPLLQQ--CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG-VHCV 75

Query: 393 GSL-----PNLKYLNLASTN 407
                     ++ L+L +  
Sbjct: 76  LQGLQTPSCKIQKLSLQNCC 95

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 363 LDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN 407
           L ++P  +      L+L EN +  +     L     L  LNL    
Sbjct: 22  LTALPPDLPKDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAE 66

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	421
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.8
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.64
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.55
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.53
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.47
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.44
d2e3ia1	71	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.43
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.42
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.4
d2hqha1	72	Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2cp0a1	83	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.39
d2e3ha1	71	CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2cowa1	88	Kinesin-like protein kif13b {Human (Homo sapiens)	99.35
d1ixda_	104	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.31
d2coza1	109	Centrosome-associated protein 350 {Human (Homo sap	99.3
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.29
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.29
d1tova_	98	Cytoskeleton-associated protein F53F4.3 {Caenorhab	99.28
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.27
d1whja_	102	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.27
d2cp6a1	160	Restin {Human (Homo sapiens) [TaxId: 9606]}	99.26
d1whka_	91	Restin-like protein 2, Rsnl2 {Mouse (Mus musculus)	99.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.24
d1whha_	102	CLIP170-related 59kda protein CLIPR-59 (1500005P14	99.24
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.23
d1whga_	113	Tubulin-specific chaperone B (SKAP1) {Mouse (Mus m	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.2
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.16
d1whma_	92	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.16
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.09
d1whla_	95	Cylindromatosis tumour-suppressor Cyld {Human (Hom	99.08
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.95
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.85
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.84
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.82
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.75
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.7
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.63
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.49
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.47
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.15
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.96
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.84
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.58
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.16
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.9

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.80  E-value=7.6e-21  Score=179.82  Aligned_cols=257  Identities=18%  Similarity=0.137  Sum_probs=177.4

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-c-cccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-R-IRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~-N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      +++.|||++|.++....+|..+++|++|++|+| + |.+. +.+|..++.+++|++|+|++|.+.+.....   +..+++
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~-g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~---~~~~~~  126 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDF---LSQIKT  126 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEE-SCCCGGGGGCTTCSEEEEEEECCEEECCGG---GGGCTT
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccc-cccccccccccccchhhhcccccccccccc---ccchhh
Confidence            699999999999965578889999999999999 4 7888 689999999999999999988776654444   667999


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHHHHhhccccchhhHHHHHHHhCCCCCCccc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDYIKEFGAVWLDEKRRAEFLEANPRVGDNYF  178 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~l~~~~~~~~~~~~~~~~~~~~~~~~~n~~  178 (421)
                      |+++++++|.+..      ..+..++.++.|+.++.+.....             +..+                  ..+
T Consensus       127 L~~l~l~~N~~~~------~~p~~l~~l~~L~~l~l~~n~l~-------------~~ip------------------~~~  169 (313)
T d1ogqa_         127 LVTLDFSYNALSG------TLPPSISSLPNLVGITFDGNRIS-------------GAIP------------------DSY  169 (313)
T ss_dssp             CCEEECCSSEEES------CCCGGGGGCTTCCEEECCSSCCE-------------EECC------------------GGG
T ss_pred             hcccccccccccc------cCchhhccCcccceeeccccccc-------------cccc------------------ccc
Confidence            9999999998743      34567889999998888632111             1111                  000


Q ss_pred             ccccCCCCceEEeecCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchhH
Q psy9363         179 QVMEDDIGLRVCDSEGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSFM  258 (421)
Q Consensus       179 ~~~~~~i~~rv~~l~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~~  258 (421)
                      ... ......+     ....+++.|..|...+...                                             
T Consensus       170 ~~l-~~l~~~l-----~~~~n~l~~~~~~~~~~l~---------------------------------------------  198 (313)
T d1ogqa_         170 GSF-SKLFTSM-----TISRNRLTGKIPPTFANLN---------------------------------------------  198 (313)
T ss_dssp             GCC-CTTCCEE-----ECCSSEEEEECCGGGGGCC---------------------------------------------
T ss_pred             ccc-ccccccc-----ccccccccccccccccccc---------------------------------------------
Confidence            000 0000000     1122222322221110000                                             


Q ss_pred             HHhhhhhccccchhhhccccceeeeeecCceeEeecccchhhhhCCCccCCCCCCCchhhhcCCCCCccEEEeeCcccch
Q psy9363         259 EALHRKYVETDNELTVRENVEEVKASINAPFLELVGFDQVHEEQNTNKLPIPNDTSGVMEQIFPQGHIHTLTLGNMGYIW  338 (421)
Q Consensus       259 ~al~~~y~~~~~~~~~~~~~~~~~~~~~~~~~e~~g~~~l~~~~~L~~l~l~~~~~~~~~~~l~~~~L~~L~Ls~N~l~~  338 (421)
                                           ...+.+.....+                    +.+|..+..+  ++++.+++++|.+. 
T Consensus       199 ---------------------~~~l~l~~~~~~--------------------~~~~~~~~~~--~~l~~l~~~~~~l~-  234 (313)
T d1ogqa_         199 ---------------------LAFVDLSRNMLE--------------------GDASVLFGSD--KNTQKIHLAKNSLA-  234 (313)
T ss_dssp             ---------------------CSEEECCSSEEE--------------------ECCGGGCCTT--SCCSEEECCSSEEC-
T ss_pred             ---------------------cccccccccccc--------------------cccccccccc--cccccccccccccc-
Confidence                                 000000010000                    4456677788  99999999999998 


Q ss_pred             hhHHHHhccCCC-cEEEccCCcCc-ccCCCCCCCCCCcEEECcCCCCCCCCcccccCcccccccccccccc-CcccCCCC
Q psy9363         339 ADILKLLANFPV-TCLKLPSNRIT-TLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLPNLKYLNLASTN-LRNIKLNK  415 (421)
Q Consensus       339 ~~i~~~~~~l~~-~~L~L~~N~l~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~-l~~i~~p~  415 (421)
                      ..++ .+..+++ +.|+|++|+|+ .+|..++.+++|+.|+|++|+|+ +. +..++.+++|+.+++++|+ +.+.|+|.
T Consensus       235 ~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~-g~-iP~~~~L~~L~~l~l~~N~~l~g~plp~  311 (313)
T d1ogqa_         235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC-GE-IPQGGNLQRFDVSAYANNKCLCGSPLPA  311 (313)
T ss_dssp             CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE-EE-CCCSTTGGGSCGGGTCSSSEEESTTSSC
T ss_pred             cccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccc-cc-CCCcccCCCCCHHHhCCCccccCCCCCC
Confidence            2222 3566778 99999999999 68887899999999999999995 33 3467889999999999997 78878886


Q ss_pred             C
Q psy9363         416 E  416 (421)
Q Consensus       416 ~  416 (421)
                      +
T Consensus       312 c  312 (313)
T d1ogqa_         312 C  312 (313)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.8e-17  Score=141.14  Aligned_cols=125  Identities=17%  Similarity=0.161  Sum_probs=102.5

Q ss_pred             HhhhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHH
Q psy9363          15 IEQAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLL   93 (421)
Q Consensus        15 ~~~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll   93 (421)
                      +...+++|++||||+|.|++++.    ++.+++|++|++ +|+++. ..+.....+++|++|+|++|.+. ++.++.. +
T Consensus        36 ~~~~l~~L~~L~Ls~N~i~~l~~----~~~l~~L~~L~ls~N~i~~-l~~~~~~~l~~L~~L~L~~N~i~-~~~~l~~-l  108 (162)
T d1a9na_          36 LGATLDQFDAIDFSDNEIRKLDG----FPLLRRLKTLLVNNNRICR-IGEGLDQALPDLTELILTNNSLV-ELGDLDP-L  108 (162)
T ss_dssp             GGGGTTCCSEEECCSSCCCEECC----CCCCSSCCEEECCSSCCCE-ECSCHHHHCTTCCEEECCSCCCC-CGGGGGG-G
T ss_pred             cccccccCCEEECCCCCCCccCC----cccCcchhhhhcccccccC-CCccccccccccccceecccccc-ccccccc-c
Confidence            44678899999999999997754    567999999999 588884 22333457899999999887763 3444444 7


Q ss_pred             hhCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccChhhhhccHHHH
Q psy9363          94 HYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIERQERQGSEYDY  149 (421)
Q Consensus        94 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~~  149 (421)
                      ..+|+|++|++++||++..   +.+|+.+++.+|+|++||++.|+++||+.||.+|
T Consensus       109 ~~l~~L~~L~l~~N~i~~~---~~~r~~~i~~lp~L~~LD~~~i~~~er~~A~~~~  161 (162)
T d1a9na_         109 ASLKSLTYLCILRNPVTNK---KHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMF  161 (162)
T ss_dssp             GGCTTCCEEECCSSGGGGS---TTHHHHHHHHCTTCSEETTEECCHHHHHHHHHTT
T ss_pred             ccccccchhhcCCCccccc---cchHHHHHHHCCCcCeeCCCCCCHHHHHHHHHHh
Confidence            8899999999999998655   4788999999999999999999999999999776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.64  E-value=9.3e-18  Score=158.27  Aligned_cols=113  Identities=14%  Similarity=0.214  Sum_probs=87.9

Q ss_pred             CChhHHhhhCCCCcEEECCC-CCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchh
Q psy9363          10 KTHDEIEQAVPFIEDLDLSR-NLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFV   87 (421)
Q Consensus        10 ~~~~~~~~~~~~L~~L~Ls~-N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~   87 (421)
                      +.|+++. .+++|++|||++ |.|+  +.+|..+++|++|++|+| +|++. +..+.......+|++++++.|...+.++
T Consensus        67 ~lp~~l~-~L~~L~~L~Ls~~N~l~--g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~l~l~~N~~~~~~p  142 (313)
T d1ogqa_          67 PIPSSLA-NLPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVTLDFSYNALSGTLP  142 (313)
T ss_dssp             ECCGGGG-GCTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred             CCChHHh-cCccccccccccccccc--cccccccccccccchhhhcccccc-ccccccccchhhhcccccccccccccCc
Confidence            4677887 589999999996 8888  678888999999999999 59998 4566667788999999998776655544


Q ss_pred             hHHHHHhhCCCCceeeecCCCCCCccccchhHHHHHHhccCc-eeccCC
Q psy9363          88 KEGSLLHYLPKLSSLRFTKNPILAEERVVSSREKTIARLGGL-KLLNGS  135 (421)
Q Consensus        88 ~~~~ll~~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L-~~ln~s  135 (421)
                      ..   +..++.|+++++++|.+..      ..+..++.+..+ +.++.+
T Consensus       143 ~~---l~~l~~L~~l~l~~n~l~~------~ip~~~~~l~~l~~~l~~~  182 (313)
T d1ogqa_         143 PS---ISSLPNLVGITFDGNRISG------AIPDSYGSFSKLFTSMTIS  182 (313)
T ss_dssp             GG---GGGCTTCCEEECCSSCCEE------ECCGGGGCCCTTCCEEECC
T ss_pred             hh---hccCcccceeecccccccc------ccccccccccccccccccc
Confidence            43   6789999999999999843      334556666655 545443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.55  E-value=2.8e-14  Score=133.36  Aligned_cols=98  Identities=17%  Similarity=0.147  Sum_probs=79.7

Q ss_pred             CCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCc--
Q psy9363         313 TSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGE--  388 (421)
Q Consensus       313 ~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~--  388 (421)
                      ..+..+..+  +.++.|++++|.+. .+  +..+..+++ ++|+|++|+|+.||..+..+++|+.|+|++|+|+.++.  
T Consensus       186 ~~~~~~~~~--~~l~~L~~s~n~l~~~~--~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~  261 (305)
T d1xkua_         186 VDAASLKGL--NNLAKLGLSFNSISAVD--NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND  261 (305)
T ss_dssp             ECTGGGTTC--TTCCEEECCSSCCCEEC--TTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred             CChhHhhcc--ccccccccccccccccc--cccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhh
Confidence            345667888  99999999999998 32  255677889 99999999999999878889999999999999988652  


Q ss_pred             ---ccccCccccccccccccccCcccCCC
Q psy9363         389 ---VNALGSLPNLKYLNLASTNLRNIKLN  414 (421)
Q Consensus       389 ---~~~l~~l~~L~~L~Ls~N~l~~i~~p  414 (421)
                         ...+..+++|+.|+|++|+++..+++
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N~~~~~~~~  290 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSNPVQYWEIQ  290 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSSSSCGGGSC
T ss_pred             ccCcchhcccCCCCEEECCCCcCccCcCC
Confidence               12244678999999999999755544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=4.8e-14  Score=135.40  Aligned_cols=80  Identities=16%  Similarity=0.168  Sum_probs=64.1

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCc
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGS  394 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~  394 (421)
                      .+..+  ++++.|++++|.++ ..    .+..+|+ ++|++++|+|+.++ .+..+++|+.|++++|+|++..   .+++
T Consensus       302 ~~~~~--~~l~~L~ls~n~l~~l~----~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~---~l~~  371 (384)
T d2omza2         302 PISNL--KNLTYLTLYFNNISDIS----PVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLT---PLAN  371 (384)
T ss_dssp             GGGGC--TTCSEEECCSSCCSCCG----GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCG---GGTT
T ss_pred             ccchh--cccCeEECCCCCCCCCc----ccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCCh---hhcc
Confidence            46677  88899999999888 32    2567888 89999999988876 3677889999999999987643   4788


Q ss_pred             cccccccccccc
Q psy9363         395 LPNLKYLNLAST  406 (421)
Q Consensus       395 l~~L~~L~Ls~N  406 (421)
                      +++|+.|+|++|
T Consensus       372 l~~L~~L~L~~N  383 (384)
T d2omza2         372 LTRITQLGLNDQ  383 (384)
T ss_dssp             CTTCSEEECCCE
T ss_pred             CCCCCEeeCCCC
Confidence            889999999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.53  E-value=3.3e-14  Score=136.58  Aligned_cols=100  Identities=17%  Similarity=0.272  Sum_probs=79.5

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEEC
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYL  378 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~L  378 (421)
                      +|+.+.+++   ..++ .+..+  +.++.+.++.|.++..   .....++. +.|++++|+|+++++ +..+++|+.|++
T Consensus       264 ~L~~L~l~~~~l~~~~-~~~~~--~~l~~l~~~~n~l~~~---~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L  336 (384)
T d2omza2         264 KLTELKLGANQISNIS-PLAGL--TALTNLELNENQLEDI---SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFF  336 (384)
T ss_dssp             TCSEEECCSSCCCCCG-GGTTC--TTCSEEECCSSCCSCC---GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEEC
T ss_pred             cCCEeeccCcccCCCC-ccccc--cccccccccccccccc---cccchhcccCeEECCCCCCCCCcc-cccCCCCCEEEC
Confidence            666666664   2222 35567  7888899999888721   23566788 999999999998864 788999999999


Q ss_pred             cCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         379 QENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       379 s~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      ++|+|++.   ..++.+++|++|++++|+|++++
T Consensus       337 ~~n~l~~l---~~l~~l~~L~~L~l~~N~l~~l~  367 (384)
T d2omza2         337 ANNKVSDV---SSLANLTNINWLSAGHNQISDLT  367 (384)
T ss_dssp             CSSCCCCC---GGGGGCTTCCEEECCSSCCCBCG
T ss_pred             CCCCCCCC---hhHcCCCCCCEEECCCCcCCCCh
Confidence            99999774   36889999999999999999865

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=5.5e-14  Score=130.14  Aligned_cols=83  Identities=14%  Similarity=0.013  Sum_probs=41.8

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccc-cccCCcchhhHHHHHhhCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLG-RTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~-~~~~~~~~~~~~~ll~~l~~   98 (421)
                      ++++|||++|.|+.++  +..+..+++|++|++ +|++.. ..+.....++.++.+... .+.+....+..   +..+++
T Consensus        33 ~~~~L~Ls~N~i~~i~--~~~f~~l~~L~~L~ls~n~l~~-i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~---~~~l~~  106 (284)
T d1ozna_          33 ASQRIFLHGNRISHVP--AASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLSDNAQLRSVDPAT---FHGLGR  106 (284)
T ss_dssp             TCSEEECTTSCCCEEC--TTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSCTTCCCCCTTT---TTTCTT
T ss_pred             CCCEEECcCCcCCCCC--HHHhhccccccccccccccccc-cccccccccccccccccccccccccccchh---hccccc
Confidence            5667777777776432  234556667777777 356552 222222334445544442 22221111111   445666


Q ss_pred             CceeeecCCCC
Q psy9363          99 LSSLRFTKNPI  109 (421)
Q Consensus        99 L~~L~l~~N~l  109 (421)
                      |++|++++|.+
T Consensus       107 L~~L~l~~n~~  117 (284)
T d1ozna_         107 LHTLHLDRCGL  117 (284)
T ss_dssp             CCEEECTTSCC
T ss_pred             CCEEecCCccc
Confidence            66666666665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.9e-14  Score=127.27  Aligned_cols=66  Identities=18%  Similarity=0.069  Sum_probs=52.4

Q ss_pred             chhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCC
Q psy9363         315 GVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIV  384 (421)
Q Consensus       315 ~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~  384 (421)
                      +..+..+  ++++.|++++|+|+ .+  +..+..+++ ++|+|++|+|+.||..+..+++|+.|+|++|.+.
T Consensus       141 ~~~~~~l--~~l~~l~l~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         141 PGLLTPT--PKLEKLSLANNNLTELP--AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTC--TTCCEEECTTSCCSCCC--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccc--ccchhcccccccccccC--ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            3445667  88999999999988 32  245667788 8999999999998887778888999999999874

>d2e3ia1 b.34.10.1 (A:58-128) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.5e-13  Score=97.30  Aligned_cols=68  Identities=37%  Similarity=0.605  Sum_probs=61.1

Q ss_pred             CCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcccc
Q psy9363         183 DDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF  253 (421)
Q Consensus       183 ~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~  253 (421)
                      +.+++||. +. ...+++||+|+++...+.|+|||||++. |+++|+++|.+||+|. +++|.|++++++..
T Consensus         1 f~vG~rV~-v~~~~~G~vryvG~~~~~~g~~vGVEld~p~-Gk~dGt~~G~~YF~c~-~~~G~Fv~~~~v~k   69 (71)
T d2e3ia1           1 FRVGERVW-VNGNKPGFIQFLGETQFAPGQWAGIVLDEPI-GKNDGSVAGVRYFQCE-PLKGIFTRPSKLTR   69 (71)
T ss_dssp             CCTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-SSBSSEETTEESSCCS-TTCEEEECGGGEES
T ss_pred             CccCCEEE-ECCCcEEEEEEEeecCCCCCcEEEEEECCCC-CCCCCEECCEEEEecC-CCcEEEeCHHHEEe
Confidence            46899998 65 4789999999999999999999999975 9999999999999996 89999999988743

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.42  E-value=3.1e-14  Score=124.89  Aligned_cols=123  Identities=21%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCccccc----------------------ccccch
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYL----------------------AEVVFF   74 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~----------------------~~~L~~   74 (421)
                      .+++|++|+|++|.|++++.    ++.|++|++|+| +|.+..  +|.....                      +++|++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~----l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~  119 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS----LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLSGIEKLVNLRV  119 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC----HHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSE
T ss_pred             cccccceeECcccCCCCccc----ccCCccccChhhccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            57888888888888887644    345788888888 477763  3433333                      344555


Q ss_pred             hccccccCCcchhhHHHHHhhCCCCceeeecCCCCCCcc----ccchhHHHHHHhccCceeccCCccChhhhhccHHH
Q psy9363          75 VHLGRTLCDEDFVKEGSLLHYLPKLSSLRFTKNPILAEE----RVVSSREKTIARLGGLKLLNGSAIERQERQGSEYD  148 (421)
Q Consensus        75 L~L~~~~~~~~~~~~~~ll~~l~~L~~L~l~~N~l~~~~----~~~~~~~~~i~~l~~L~~ln~s~i~~~~r~~ae~~  148 (421)
                      |+|++|.+ .++..+.. +..+++|++|+|++||+....    ....+|..+++++|+|+.||+..|+.+||+.||.+
T Consensus       120 L~L~~N~i-~~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~~I~~~er~~A~~~  195 (198)
T d1m9la_         120 LYMSNNKI-TNWGEIDK-LAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVA  195 (198)
T ss_dssp             EEESEEEC-CCHHHHHH-HTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESSGGGTTTTTTHHHHH
T ss_pred             cccccchh-cccccccc-ccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCCccCCHHHHHHHHHh
Confidence            55544444 12334444 788999999999999985442    23457888999999999999999999999999975

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.7e-13  Score=125.63  Aligned_cols=82  Identities=23%  Similarity=0.228  Sum_probs=58.2

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      .+++.|++++|.++ .+.  ..+..++. +.+++++|+|+.++... ..+++|+.|+|++|+|+.++  ..+..+++|+.
T Consensus       124 ~~l~~L~l~~n~l~~l~~--~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp--~~~~~~~~L~~  199 (266)
T d1p9ag_         124 GELQELYLKGNELKTLPP--GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIP--KGFFGSHLLPF  199 (266)
T ss_dssp             TTCCEEECTTSCCCCCCT--TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCC--TTTTTTCCCSE
T ss_pred             cccccccccccccceecc--ccccccccchhcccccccccccCccccccccccceeecccCCCcccC--hhHCCCCCCCE
Confidence            67777778888776 222  44556677 78888888888776543 67788888888888887653  35556778888


Q ss_pred             cccccccCc
Q psy9363         401 LNLASTNLR  409 (421)
Q Consensus       401 L~Ls~N~l~  409 (421)
                      |+|++|++.
T Consensus       200 L~L~~Np~~  208 (266)
T d1p9ag_         200 AFLHGNPWL  208 (266)
T ss_dssp             EECCSCCBC
T ss_pred             EEecCCCCC
Confidence            888888753

>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Dynactin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.5e-13  Score=95.20  Aligned_cols=67  Identities=39%  Similarity=0.689  Sum_probs=59.9

Q ss_pred             CCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         183 DDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       183 ~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      +.+++||. +.  ...+++||+|+++...+.|+|||||+.. |+++|+++|.+||+|. +++|.|++++++.
T Consensus         2 l~vG~rV~-v~~~~~~G~vryvG~~~~~~g~~vGVeldep~-GkndGt~~G~~YF~C~-~~~G~Fv~~~~v~   70 (72)
T d2hqha1           2 LRVGSRVE-VIGKGHRGTVAYVGATLFATGKWVGVILDEAK-GKNDGTVQGRKYFTCD-EGHGIFVRQSQIQ   70 (72)
T ss_dssp             CSTTCEEE-ETTTCCEEEEEEEECCSSSSSCEEEEEESSSC-SSBSSEETTEESSCCC-TTTEEEECGGGEE
T ss_pred             cccCCEEE-EcCCCEEEEEEEecccCCCCCcEEEEEEccCC-CCCCCEECCEEEEecC-CCcEEEechHHEE
Confidence            46899987 53  3689999999999999999999999975 9999999999999996 8999999998763

>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.4e-13  Score=98.72  Aligned_cols=72  Identities=33%  Similarity=0.621  Sum_probs=64.0

Q ss_pred             cccCCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         180 VMEDDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       180 ~~~~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      ...+.+++||. +. ...+++||+|+++...+.|+|||||++ +|+|+|+++|.+||+|. +++|.|++++++...
T Consensus         8 ~~~l~vG~rV~-v~~~~~G~vryvG~~~~~~g~~vGVElD~p-~GkndGt~~G~rYF~C~-~~~G~Fv~~~~v~~~   80 (83)
T d2cp0a1           8 ALGLRLGDRVL-LDGQKTGTLRFCGTTEFASGQWVGVELDEP-EGKNDGSVGGVRYFICP-PKQGLFASVSKISKA   80 (83)
T ss_dssp             HHTCCTTCEEE-ETTTEEEEEEEEECCSSSCSCEEEEEESSS-CCSBCSEETTEECCCCS-SSCEEEECGGGEEEC
T ss_pred             ecCCccCCEEE-ECCCceEEEEEeeecCCCCCcEEEEEECCC-CCCCCCEECCEEEeecC-CCceEEcCHHHcccc
Confidence            34578999998 65 478999999999999999999999998 59999999999999996 899999999987543

>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP-115
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=7.2e-13  Score=94.06  Aligned_cols=65  Identities=32%  Similarity=0.649  Sum_probs=59.5

Q ss_pred             CCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcc
Q psy9363         184 DIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL  251 (421)
Q Consensus       184 ~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l  251 (421)
                      .+++||. +. ...+++||+|+++...+.|+|||||+.. |+++|+++|.+||.|. +.+|.|++++++
T Consensus         2 ~vG~rV~-v~~~~~G~vryvG~~~~~~g~~~GVeld~~~-Gk~dG~~~G~~YF~c~-~~~G~Fv~~~kv   67 (71)
T d2e3ha1           2 KIGDRVL-VGGTKAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKV   67 (71)
T ss_dssp             CTTCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEESCCCC-TTCEEEEEGGGE
T ss_pred             ccCCEEE-ECCCceEEEEEecccCCCCCCEEEEEECCCC-CCCCCEECCEEEEecC-CCCEEEeCHHHc
Confidence            5889998 54 4789999999999999999999999974 9999999999999997 899999999887

>d2cowa1 b.34.10.1 (A:7-94) Kinesin-like protein kif13b {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Kinesin-like protein kif13b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1.2e-12  Score=96.44  Aligned_cols=69  Identities=30%  Similarity=0.543  Sum_probs=62.5

Q ss_pred             cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcccc
Q psy9363         182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF  253 (421)
Q Consensus       182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~  253 (421)
                      .+.+++||. +.. ..+++||+|+++...+.|+|||||+.. |+++|+++|.+||.|. +.+|.|++++++..
T Consensus        17 ~l~vG~rV~-V~~~~~G~vryiG~~~~~~g~~vGVeld~p~-GkndG~~~G~~YF~c~-~~~G~Fv~~~~v~~   86 (88)
T d2cowa1          17 WLREGEFVT-VGAHKTGVVRYVGPADFQEGTWVGVELDLPS-GKNDGSIGGKQYFRCN-PGYGLLVRPSRVRR   86 (88)
T ss_dssp             SCCTTCEEE-CSSSCEEEEEEEECCSSSSSCEEEEECSSSC-CSCSSEETTEECCCSC-TTCCEEECGGGCEE
T ss_pred             cCcccCEEE-ECCCcEEEEEEeeecCCCCCcEEEEEeCCCC-CCCCCEECCEEEEecC-CCcEEEecHHHcEE
Confidence            378999998 765 579999999999999999999999975 9999999999999996 89999999998753

>d1ixda_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-12  Score=99.62  Aligned_cols=74  Identities=24%  Similarity=0.427  Sum_probs=64.7

Q ss_pred             cCCCCceEEeecC---ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccCchh
Q psy9363         182 EDDIGLRVCDSEG---HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFGSSF  257 (421)
Q Consensus       182 ~~~i~~rv~~l~~---~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g~~~  257 (421)
                      .+.+++||. +..   ..+++||+|+++...+.|+|||||+..+|+++|+++|++||+|. +.+|.|++++++.....|
T Consensus        17 ~l~vG~rV~-V~~~~~~~G~vryvG~~~~~~g~~~GVeldd~~~G~ndGt~~G~rYF~C~-~~~G~Fv~~~~~~~~~~f   93 (104)
T d1ixda_          17 GLEVGSLAE-VKENPPFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCA-LKKALFVKLKSCRPDSRF   93 (104)
T ss_dssp             CCCTTSEEE-ECSSSCCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCC-TTCBEEEEGGGEEECCTT
T ss_pred             CCccCCEEE-ECCCCCcEEEEEEEecCCCCCCcEEEEEeCCCCCCCcCCEECCEEEEecC-CCcEEEechHHCcccccc
Confidence            377999998 543   57999999999999999999999988889999999999999996 899999999998654333

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.31  E-value=1.2e-12  Score=105.60  Aligned_cols=90  Identities=22%  Similarity=0.266  Sum_probs=79.4

Q ss_pred             hhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP  396 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  396 (421)
                      +..+  ++|++|++++|.|+  .++..+..+++ ++|++++|+|+.+|. +..+++|+.|++++|+|++++.+..+..++
T Consensus        16 l~~l--~~L~~L~ls~N~l~--~lp~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~~~   90 (124)
T d1dcea3          16 LEQL--LLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCP   90 (124)
T ss_dssp             GGGG--TTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCCSSSTTGGGGGCT
T ss_pred             cccC--CCCCEEECCCCccC--cchhhhhhhhcccccccccccccccCc-cccccccCeEECCCCccCCCCCchhhcCCC
Confidence            6788  99999999999998  23345678899 999999999999874 789999999999999999887667889999


Q ss_pred             cccccccccccCcccC
Q psy9363         397 NLKYLNLASTNLRNIK  412 (421)
Q Consensus       397 ~L~~L~Ls~N~l~~i~  412 (421)
                      +|+.|++++|+++.++
T Consensus        91 ~L~~L~l~~N~i~~~~  106 (124)
T d1dcea3          91 RLVLLNLQGNSLCQEE  106 (124)
T ss_dssp             TCCEEECTTSGGGGSS
T ss_pred             CCCEEECCCCcCCcCc
Confidence            9999999999998753

>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Centrosome-associated protein 350
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.1e-12  Score=99.31  Aligned_cols=69  Identities=28%  Similarity=0.585  Sum_probs=62.6

Q ss_pred             cCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcccc
Q psy9363         182 EDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF  253 (421)
Q Consensus       182 ~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~  253 (421)
                      .+.+|+||. +.. ..|++||+|+++...|.|+|||||+.. |+++|+++|.+||.|. +.+|.|++++++..
T Consensus        24 ~~~vG~rV~-V~~~~~G~vryiG~~~~~~g~~vGVElDep~-GkndGtv~G~~YF~C~-~~~GiFv~~~~v~~   93 (109)
T d2coza1          24 DFHIGDRVL-IGNVQPGILRFKGETSFAKGFWAGVELDKPE-GNNNGTYDGIAYFECK-EKHGIFAPPQKISH   93 (109)
T ss_dssp             SCCTTEEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSTT-SSBCSEETTEECCCCC-SSCEEEECGGGEEC
T ss_pred             cCccCCEEE-ECCCeeEEEEEEeecCCCCCcEEEEEecCCC-CCCCCEECCEEEEecC-CCcEEEeCHHHcEe
Confidence            478999998 655 679999999999999999999999985 9999999999999996 89999999998753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.29  E-value=9.3e-12  Score=110.95  Aligned_cols=78  Identities=27%  Similarity=0.344  Sum_probs=65.6

Q ss_pred             hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL  395 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  395 (421)
                      +..+  ++|+.|++++|.+. +.    .+..+++ +.|+|++|+++.++. +..+++|+.|+|++|+|++++   .++.+
T Consensus       147 ~~~~--~~L~~L~l~~n~~~~~~----~l~~l~~L~~L~Ls~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~---~l~~l  216 (227)
T d1h6ua2         147 LAGL--TNLQYLSIGNAQVSDLT----PLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVS---PLANT  216 (227)
T ss_dssp             GGGC--TTCCEEECCSSCCCCCG----GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG---GGTTC
T ss_pred             hccc--cccccccccccccccch----hhcccccceecccCCCccCCChh-hcCCCCCCEEECcCCcCCCCc---ccccC
Confidence            4466  88999999999998 43    2567888 999999999998864 688899999999999998754   58899


Q ss_pred             cccccccccc
Q psy9363         396 PNLKYLNLAS  405 (421)
Q Consensus       396 ~~L~~L~Ls~  405 (421)
                      ++|+.|++++
T Consensus       217 ~~L~~L~lsn  226 (227)
T d1h6ua2         217 SNLFIVTLTN  226 (227)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCCEEEeeC
Confidence            9999999974

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.29  E-value=4.8e-12  Score=119.31  Aligned_cols=91  Identities=18%  Similarity=0.119  Sum_probs=68.0

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      .++++|||++|.+++++   +   .+++|++|+| .|+++  .+|..   +.+|+.|++.+|.++ .+.++      .+.
T Consensus        38 ~~l~~LdLs~~~L~~lp---~---~~~~L~~L~Ls~N~l~--~lp~~---~~~L~~L~l~~n~l~-~l~~l------p~~   99 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP---E---LPPHLESLVASCNSLT--ELPEL---PQSLKSLLVDNNNLK-ALSDL------PPL   99 (353)
T ss_dssp             HTCSEEECTTSCCSCCC---S---CCTTCSEEECCSSCCS--SCCCC---CTTCCEEECCSSCCS-CCCSC------CTT
T ss_pred             cCCCEEEeCCCCCCCCC---C---CCCCCCEEECCCCCCc--ccccc---hhhhhhhhhhhcccc-hhhhh------ccc
Confidence            47999999999998654   3   2689999999 59998  46654   468999999877653 22221      357


Q ss_pred             CceeeecCCCCCCccccchhHHHHHHhccCceeccCCc
Q psy9363          99 LSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSA  136 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~  136 (421)
                      |++|++++|.+....        .++.+++|+.|+.+.
T Consensus       100 L~~L~L~~n~l~~lp--------~~~~l~~L~~L~l~~  129 (353)
T d1jl5a_         100 LEYLGVSNNQLEKLP--------ELQNSSFLKIIDVDN  129 (353)
T ss_dssp             CCEEECCSSCCSSCC--------CCTTCTTCCEEECCS
T ss_pred             ccccccccccccccc--------chhhhccceeecccc
Confidence            999999999985432        256788999998864

>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cytoskeleton-associated protein F53F4.3
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.28  E-value=3.1e-12  Score=96.36  Aligned_cols=70  Identities=36%  Similarity=0.667  Sum_probs=62.6

Q ss_pred             cCCCCceEEeecC-----ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         182 EDDIGLRVCDSEG-----HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       182 ~~~i~~rv~~l~~-----~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      .+.+++||. +..     ..|++||+|+++...+.|+|||||+.. |+++|+++|++||+|. +.+|.|++++++..+
T Consensus        14 ~l~VG~RV~-V~~~~~~~~~G~vryiG~~~~~~g~~vGVelD~p~-G~~dG~~~g~~YF~c~-~~~G~Fv~~~~v~~g   88 (98)
T d1tova_          14 NIMVGNRCE-VTVGAQMARRGEVAYVGATKFKEGVWVGVKYDEPV-GKNDGSVAGVRYFDCD-PKYGGFVRPVDVKVG   88 (98)
T ss_dssp             TCCTTCEEE-ECCTTSCCEEEEEEEEECCSSSSSCEEEEEESSSC-SSBSSEETTEECSCCC-TTSEEEECGGGEEES
T ss_pred             CCccCCEEE-EecCCCCceeEEEEEeeecCCCCceEEEEEeCCCC-CCcCCEECCEEEEEcC-CCCEEEeChhheEEC
Confidence            477999987 421     579999999999999999999999975 9999999999999997 899999999998765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.27  E-value=8.3e-12  Score=116.23  Aligned_cols=86  Identities=21%  Similarity=0.199  Sum_probs=73.5

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKYL  401 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L  401 (421)
                      ++|+.|++++|.+. ...+..+..++. +.|++++|.++.+++.. ..+++|++|+|++|.|+.++  ..+..+++|+.|
T Consensus       171 ~~L~~L~l~~n~~~-~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp--~~l~~l~~L~~L  247 (305)
T d1xkua_         171 PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP--GGLADHKYIQVV  247 (305)
T ss_dssp             TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC--TTTTTCSSCCEE
T ss_pred             CccCEEECCCCcCC-CCChhHhhccccccccccccccccccccccccccccceeeecccccccccc--cccccccCCCEE
Confidence            89999999999988 222355677788 99999999999886544 78899999999999998764  478999999999


Q ss_pred             ccccccCcccC
Q psy9363         402 NLASTNLRNIK  412 (421)
Q Consensus       402 ~Ls~N~l~~i~  412 (421)
                      +|++|+|+.|+
T Consensus       248 ~Ls~N~i~~i~  258 (305)
T d1xkua_         248 YLHNNNISAIG  258 (305)
T ss_dssp             ECCSSCCCCCC
T ss_pred             ECCCCccCccC
Confidence            99999999874

>d1whja_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.1e-12  Score=96.12  Aligned_cols=69  Identities=33%  Similarity=0.575  Sum_probs=62.0

Q ss_pred             ccCCCCceEEeec-CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         181 MEDDIGLRVCDSE-GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       181 ~~~~i~~rv~~l~-~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ..+.+++||. +. ...+++||+|+++...+.|+|||||+.. |+++|+++|++||+|. +++|.|++++++.
T Consensus        23 ~~l~vG~rV~-v~~~~~G~VryvG~~~~~~g~~vGVeldep~-GkndGt~~G~~YF~C~-~~~GiFv~~~~v~   92 (102)
T d1whja_          23 LGLKLGDRVV-IAGQKVGTLRFCGTTEFASGQWAGIELDEPE-GKNNGSVGRVQYFKCA-PKYGIFAPLSKIS   92 (102)
T ss_dssp             HTCCTTCEEE-ETTTEEEEEEEEEECSSSCSEEEEEEESSSC-CSBSSEETTEECCCCC-TTTEEEEEGGGEE
T ss_pred             cCCccCCEEE-ECCCCeEEEEEeeecCCCCCcEEEEEECCCC-CCCCCEECCEEEeecC-CCcEEEecHHHee
Confidence            3477999998 54 4789999999999999999999999975 9999999999999996 8999999999873

>d2cp6a1 b.34.10.1 (A:8-167) Restin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=6.6e-12  Score=104.66  Aligned_cols=70  Identities=31%  Similarity=0.586  Sum_probs=63.6

Q ss_pred             cccCCCCceEEee-cCceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         180 VMEDDIGLRVCDS-EGHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       180 ~~~~~i~~rv~~l-~~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ...+.+|+||. + +...|++||+|++.+..|.|+|||||+.. |||+|+++|++||.|. +.+|.|+++.++.
T Consensus        29 ~~~~~vGdrV~-v~g~~~G~vr~iG~~~~~~G~wvGVELd~p~-GKNdGsv~G~~YF~c~-~~~G~Fv~~s~v~   99 (160)
T d2cp6a1          29 ERELKIGDRVL-VGGTKAGVVRFLGETDFAKGEWCGVELDEPL-GKNDGAVAGTRYFQCQ-PKYGLFAPVHKVT   99 (160)
T ss_dssp             SSCCCSSCEEE-ETTTEEEEEEEEEECSSSSSEEEEEEESSSC-CSBSSEETTEECCCCC-TTTEEEEEGGGCE
T ss_pred             CCCCccCCEEE-ECCCCeEEEEEecccCCCCCCEEEEEeCCCC-CCCCCEECCEEeeecC-CCceEEecHhHce
Confidence            34588999998 6 44799999999999999999999999985 9999999999999997 9999999999874

>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Restin-like protein 2, Rsnl2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=3e-12  Score=94.84  Aligned_cols=68  Identities=28%  Similarity=0.568  Sum_probs=61.5

Q ss_pred             cCCCCceEEeec--CceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         182 EDDIGLRVCDSE--GHRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       182 ~~~i~~rv~~l~--~~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      .+.+++||. +.  ...+++||+|+++...+.|+|||||+.. |+++|+++|.+||.|. +.+|.|++++++.
T Consensus        12 ~l~vG~rV~-v~~~~~~G~vryvG~~~~~~g~~vGVElD~p~-GkndGtv~G~~YF~C~-~~~G~Fv~~~~v~   81 (91)
T d1whka_          12 KLHEGSQVL-LTSSNEMATVRYVGPTDFASGIWLGLELRSAK-GKNDGAVGDKRYFTCK-PNYGVLVRPSRVT   81 (91)
T ss_dssp             CCCSSCEEE-ESSSCCEEEECCCEECSSSSSEEEEEECSSSC-SSCCSEETTEECCCCS-TTCCCEECGGGEE
T ss_pred             ccccCCEEE-EcCCCeEEEEEEeeecCCCCCCEEEEEeCCCC-CCCCCEECCEEEeecC-CCceEEeCHHHeE
Confidence            377999998 53  4789999999999999999999999974 9999999999999997 8999999999874

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.24  E-value=2.2e-12  Score=104.03  Aligned_cols=105  Identities=18%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             hhCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhh
Q psy9363          17 QAVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHY   95 (421)
Q Consensus        17 ~~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~   95 (421)
                      ..+++|++|||++|.|+++   |..++.+++|++|++ +|+++.  +| .++.+++|++|++++|.+.. ++.+.. +..
T Consensus        17 ~~l~~L~~L~ls~N~l~~l---p~~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~N~i~~-~~~~~~-l~~   88 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRAL---PPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNNRLQQ-SAAIQP-LVS   88 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCC---CGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSSCCCS-SSTTGG-GGG
T ss_pred             ccCCCCCEEECCCCccCcc---hhhhhhhhcccccccccccccc--cC-ccccccccCeEECCCCccCC-CCCchh-hcC
Confidence            4678999999999999865   445788999999999 588884  44 36788999999998887732 233333 678


Q ss_pred             CCCCceeeecCCCCCCccccchhHHHHHHhccCceec
Q psy9363          96 LPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLL  132 (421)
Q Consensus        96 l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~l  132 (421)
                      +++|++|++++|+++..   ++++..++..+|+|+.+
T Consensus        89 ~~~L~~L~l~~N~i~~~---~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          89 CPRLVLLNLQGNSLCQE---EGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTCCEEECTTSGGGGS---SSCTTHHHHHCTTCSEE
T ss_pred             CCCCCEEECCCCcCCcC---ccHHHHHHHHCcCcceE
Confidence            99999999999998654   45677788888888765

>d1whha_ b.34.10.1 (A:) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=7.9e-12  Score=94.96  Aligned_cols=70  Identities=36%  Similarity=0.713  Sum_probs=63.0

Q ss_pred             ccCCCCceEEeecC-ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCcccc
Q psy9363         181 MEDDIGLRVCDSEG-HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNF  253 (421)
Q Consensus       181 ~~~~i~~rv~~l~~-~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~  253 (421)
                      ..+.+++||. +.. ..+++||+|+++...+.|+|||||+.. |+++|+++|++||.|. +.+|.|++++++..
T Consensus        24 ~~~~vGdrV~-v~~~~~G~vryvG~~~~~~g~~~GVEld~p~-GkndGt~~G~rYF~C~-p~~GiFv~~~~v~~   94 (102)
T d1whha_          24 AKAEVGDQVL-VAGQKQGIVRFYGKTDFAPGYWYGIELDQPT-GKHDGSVFGVRYFTCA-PRHGVFAPASRIQR   94 (102)
T ss_dssp             CSSCTTSEEE-ETTTEEEEEEEEEECSSSSSEEEEEECSSSC-CSSSSEETTEECSCCC-TTTEEEECGGGEEE
T ss_pred             CcCcccCEEE-ECCCceEEEEEecccCCCCCeEEEEEeCCCC-CCCCCEECCEEEEecC-CCcEEEeCHHHceE
Confidence            4478999998 644 789999999999999999999999975 9999999999999995 99999999998853

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.6e-12  Score=107.76  Aligned_cols=103  Identities=19%  Similarity=0.296  Sum_probs=85.8

Q ss_pred             CCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEE
Q psy9363         304 TNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELY  377 (421)
Q Consensus       304 L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~  377 (421)
                      ++.++|++   ..++..+..+  ++|+.|+|++|.|+ ++    .+..+++ ++|++++|+|+.+++.+ ..+++|+.|+
T Consensus        20 lr~L~L~~n~I~~i~~~~~~l--~~L~~L~Ls~N~i~~l~----~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          20 DRELDLRGYKIPVIENLGATL--DQFDAIDFSDNEIRKLD----GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             CEEEECTTSCCCSCCCGGGGT--TCCSEEECCSSCCCEEC----CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcEEECCCCCCCccCcccccc--ccCCEEECCCCCCCccC----CcccCcchhhhhcccccccCCCccccccccccccce
Confidence            34444444   4456667888  99999999999998 42    2567888 99999999999998765 6799999999


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      +++|+|++++++..+..+++|+.|++++|+++..+
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~  128 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK  128 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGST
T ss_pred             eccccccccccccccccccccchhhcCCCcccccc
Confidence            99999999887778899999999999999998754

>d1whga_ b.34.10.1 (A:) Tubulin-specific chaperone B (SKAP1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Tubulin-specific chaperone B (SKAP1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=7.9e-12  Score=96.65  Aligned_cols=70  Identities=34%  Similarity=0.672  Sum_probs=62.2

Q ss_pred             cCCCCceEEeecC-----ceeEEEEecccCCCCCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccccC
Q psy9363         182 EDDIGLRVCDSEG-----HRGTIRYVGSVEGTQGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLNFG  254 (421)
Q Consensus       182 ~~~i~~rv~~l~~-----~~~~~r~~G~ip~~~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~~g  254 (421)
                      .+.+++|+. +..     ..+++||+|+++...+.|+|||||+.. |+|+|+++|++||.|. +.+|.|++++++..+
T Consensus        32 ~~~VG~rv~-V~~~~~~~r~G~vryvG~~~~~~g~~~GVelD~p~-Gk~dG~~~G~rYF~c~-~~~G~fv~~~~v~~~  106 (113)
T d1whga_          32 AISVGSRCE-VRAPDHSLRRGTVMYVGLTDFKPGYWVGVRYDEPL-GKNDGSVNGKRYFECQ-AKYGAFVKPSAVTVG  106 (113)
T ss_dssp             TSCSSCEEE-ECCSSSSCEEEEEEEEEECSSSSSEEEEEEESSSC-CSBBSEETTEECSCCC-TTTEEEECGGGEEEE
T ss_pred             cCcCCCEEE-EEcCCCCceEEEEEEeeecCCCCCeEEEEEecCCC-CCCCCEECCEEEEecC-CCcEEEeCHHHeEEC
Confidence            367999987 532     479999999999999999999999975 9999999999999996 899999999998655

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=4.2e-11  Score=104.46  Aligned_cols=73  Identities=25%  Similarity=0.361  Sum_probs=59.1

Q ss_pred             hcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCccc
Q psy9363         319 QIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSLP  396 (421)
Q Consensus       319 ~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~  396 (421)
                      ..+  ++|+.|++++|.+. ++    .+..+++ +.|++++|+++.+++ +..+++|+.|++++|++++++   .++.++
T Consensus       125 ~~l--~~L~~L~l~~n~l~~~~----~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i~~i~---~l~~L~  194 (199)
T d2omxa2         125 KNL--TNLNRLELSSNTISDIS----ALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKVSDIS---VLAKLT  194 (199)
T ss_dssp             TTC--TTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG---GGGGCT
T ss_pred             chh--hhhHHhhhhhhhhcccc----cccccccccccccccccccCCcc-ccCCCCCCEEECCCCCCCCCc---cccCCC
Confidence            356  88999999999988 32    3566788 999999999998864 788999999999999997754   467788


Q ss_pred             ccccc
Q psy9363         397 NLKYL  401 (421)
Q Consensus       397 ~L~~L  401 (421)
                      +|++|
T Consensus       195 ~L~~L  199 (199)
T d2omxa2         195 NLESL  199 (199)
T ss_dssp             TCSEE
T ss_pred             CCCcC
Confidence            88765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=4.9e-11  Score=105.01  Aligned_cols=78  Identities=15%  Similarity=0.073  Sum_probs=54.1

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhCCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPKL   99 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~L   99 (421)
                      ++...+++.+.+++.  +..  .+|.+|+.|++ +|++..  ++ .+..+++|++|+|++|.+++- ..    +..+++|
T Consensus        25 ~~i~~~l~~~~~~~~--~~~--~~L~~L~~L~l~~~~i~~--l~-~l~~l~~L~~L~L~~n~i~~l-~~----~~~l~~L   92 (210)
T d1h6ta2          25 ETIKDNLKKKSVTDA--VTQ--NELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDI-KP----LANLKNL   92 (210)
T ss_dssp             HHHHHHTTCSCTTSE--ECH--HHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG----GTTCTTC
T ss_pred             HHHHHHhCcCccCCc--cCH--HHhcCccEEECcCCCCCC--ch-hHhhCCCCCEEeCCCccccCc-cc----cccCccc
Confidence            344557788888743  221  34678888899 577763  33 256788999999988866442 22    4579999


Q ss_pred             ceeeecCCCCC
Q psy9363         100 SSLRFTKNPIL  110 (421)
Q Consensus       100 ~~L~l~~N~l~  110 (421)
                      ++|++++|++.
T Consensus        93 ~~L~l~~n~i~  103 (210)
T d1h6ta2          93 GWLFLDENKVK  103 (210)
T ss_dssp             CEEECCSSCCC
T ss_pred             ccccccccccc
Confidence            99999999873

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.20  E-value=9e-12  Score=117.39  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=59.9

Q ss_pred             hCCCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCCCCcccccccccchhccccccCCcchhhHHHHHhhC
Q psy9363          18 AVPFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSSAPAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYL   96 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l   96 (421)
                      ..++|++|+|++|.|++++.      .+.+|+.|++ +|++..  ++.   ..+.|++|+|++|.+.. ++.    .+.+
T Consensus        56 ~~~~L~~L~Ls~N~l~~lp~------~~~~L~~L~l~~n~l~~--l~~---lp~~L~~L~L~~n~l~~-lp~----~~~l  119 (353)
T d1jl5a_          56 LPPHLESLVASCNSLTELPE------LPQSLKSLLVDNNNLKA--LSD---LPPLLEYLGVSNNQLEK-LPE----LQNS  119 (353)
T ss_dssp             CCTTCSEEECCSSCCSSCCC------CCTTCCEEECCSSCCSC--CCS---CCTTCCEEECCSSCCSS-CCC----CTTC
T ss_pred             CCCCCCEEECCCCCCccccc------chhhhhhhhhhhcccch--hhh---hcccccccccccccccc-ccc----hhhh
Confidence            45799999999999996543      2578999999 588773  332   22579999998887743 333    4569


Q ss_pred             CCCceeeecCCCCCCc
Q psy9363          97 PKLSSLRFTKNPILAE  112 (421)
Q Consensus        97 ~~L~~L~l~~N~l~~~  112 (421)
                      ++|++|++++|.+...
T Consensus       120 ~~L~~L~l~~~~~~~~  135 (353)
T d1jl5a_         120 SFLKIIDVDNNSLKKL  135 (353)
T ss_dssp             TTCCEEECCSSCCSCC
T ss_pred             ccceeecccccccccc
Confidence            9999999999998544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.9e-11  Score=116.82  Aligned_cols=106  Identities=18%  Similarity=0.081  Sum_probs=73.7

Q ss_pred             CccCcCCCChhHHhhhCCCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeecc-cccCCCCCCcc---c-ccccccchh
Q psy9363           3 SRVSNAGKTHDEIEQAVPFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNLR-IRLKSSSAPAH---S-YLAEVVFFV   75 (421)
Q Consensus         3 ~~i~~~g~~~~~~~~~~~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L~-N~l~~~~~p~~---~-~~~~~L~~L   75 (421)
                      ++|+..|  -.++...+++++.|+|++|.|++  +..++..+.++++|+.|+|+ |+++...+...   . ....+|++|
T Consensus        12 ~~i~~~~--~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L   89 (460)
T d1z7xw1          12 EELSDAR--WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL   89 (460)
T ss_dssp             CCCCHHH--HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE
T ss_pred             CcCChHH--HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEE
Confidence            3444444  45667788999999999999984  44667778889999999994 77752111110   0 123479999


Q ss_pred             ccccccCCcc-hhhHHHHHhhCCCCceeeecCCCCC
Q psy9363          76 HLGRTLCDED-FVKEGSLLHYLPKLSSLRFTKNPIL  110 (421)
Q Consensus        76 ~L~~~~~~~~-~~~~~~ll~~l~~L~~L~l~~N~l~  110 (421)
                      +|++|.++.. ...+...+..+++|++|++++|++.
T Consensus        90 ~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          90 SLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             ECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             ECCCCCccccccccccchhhccccccccccccccch
Confidence            9988777543 3344455778999999999999874

>d1whma_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=4.9e-11  Score=88.42  Aligned_cols=70  Identities=23%  Similarity=0.366  Sum_probs=60.7

Q ss_pred             ccCCCCceEEeec----CceeEEEEecccCCC--CCcEEEEEecCCCCCCCCCeeCCEEeEecCCCCceeEEecCccc
Q psy9363         181 MEDDIGLRVCDSE----GHRGTIRYVGSVEGT--QGVWYGIDWDSETRGKHDGSHNGVKYFWTHSTTSGSFMRRDKLN  252 (421)
Q Consensus       181 ~~~~i~~rv~~l~----~~~~~~r~~G~ip~~--~g~~~gle~d~~~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l~  252 (421)
                      ..+.+++||. +.    ...+++||+|.+|..  .+.|+|||||+.. |+|+|+++|+|||.|....++.|+++.++.
T Consensus         8 ~~l~vg~RV~-V~~~~~~~~GtVryiG~lp~~~~~g~wvGVElDep~-Gk~dGt~~G~r~f~~~~~~~g~fv~~~~~~   83 (92)
T d1whma_           8 PPLEINSRVS-LKVGETIESGTVIFCDVLPGKESLGYFVGVDMDNPI-GNWDGRFDGVQLCSFACVESTILLHINDII   83 (92)
T ss_dssp             CSSCTTCEEE-EEETTEEEEEEEEEEECCTTCTTTCCEEEEEESSSC-CCCCSEETTEESCSSCCTTTEEEEEGGGEE
T ss_pred             CCceeCCEEE-EecCCCceEEEEEEeCCCCCcCCCceEEEEEeCCCC-CCCCCeECCEEEEEecCCCcEEEEehhhce
Confidence            4478999998 52    268999999999864  6799999999974 999999999999999877899999998763

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.09  E-value=4.8e-11  Score=103.49  Aligned_cols=92  Identities=21%  Similarity=0.135  Sum_probs=74.1

Q ss_pred             chhhhcCCCCCccEEEeeCcccchhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCccccc
Q psy9363         315 GVMEQIFPQGHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNAL  392 (421)
Q Consensus       315 ~~~~~~l~~~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l  392 (421)
                      +..|..+  ++|+.|+|++|.+. ...+..+..++. ++|+|++|+|+.+++.. ..+++|++|+|++|+|+.++ +..|
T Consensus        47 ~~~f~~l--~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~-~~~f  122 (192)
T d1w8aa_          47 DGLFGRL--PHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM-PGSF  122 (192)
T ss_dssp             SCSGGGC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC-TTSS
T ss_pred             ccccCCC--ceEeeeeccccccc-cccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccC-HHHh
Confidence            4557788  89999999999987 122255667788 99999999999887754 78899999999999997766 5678


Q ss_pred             CccccccccccccccCcc
Q psy9363         393 GSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~  410 (421)
                      ..+++|++|+|++|++..
T Consensus       123 ~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         123 EHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             TTCTTCCEEECTTCCBCC
T ss_pred             cCCccccccccccccccc
Confidence            889999999999998863

>d1whla_ b.34.10.1 (A:) Cylindromatosis tumour-suppressor Cyld {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Cap-Gly domain
family: Cap-Gly domain
domain: Cylindromatosis tumour-suppressor Cyld
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.4e-10  Score=86.78  Aligned_cols=68  Identities=28%  Similarity=0.516  Sum_probs=57.4

Q ss_pred             CCCCceEEeecC------ceeEEEEecccCCC---CCcEEEEEecCC--CCCCCCCeeCCEEeEecCCCCceeEEecCcc
Q psy9363         183 DDIGLRVCDSEG------HRGTIRYVGSVEGT---QGVWYGIDWDSE--TRGKHDGSHNGVKYFWTHSTTSGSFMRRDKL  251 (421)
Q Consensus       183 ~~i~~rv~~l~~------~~~~~r~~G~ip~~---~g~~~gle~d~~--~~g~~~G~~~g~~~f~~~~~~~gsf~~~~~l  251 (421)
                      +.+++||. +..      ..+++||+|+++..   .|.|+|||||+.  .+|+|+|+++|+|||+|. +.+|.|++++++
T Consensus         8 l~vGs~V~-V~~~~g~~~~~G~vryvG~~~~~~~~~G~~~GVeldd~~~~~Gk~dGt~~G~rYF~C~-~~~GiFv~~~kv   85 (95)
T d1whla_           8 IDVGCPVK-VQLRSGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCD-EDCGVFVALDKL   85 (95)
T ss_dssp             CCSSCEEE-EECSSSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCC-TTTEEEECGGGE
T ss_pred             CccCCEEE-EEecCCCCceeEEEEEeccCCCCCCCCceEEEEEecCCcCCCCccCCEECCEEEEecC-CCcEEEecHHHe
Confidence            67899887 421      46999999999865   478999999874  358899999999999996 899999999987


Q ss_pred             c
Q psy9363         252 N  252 (421)
Q Consensus       252 ~  252 (421)
                      .
T Consensus        86 ~   86 (95)
T d1whla_          86 E   86 (95)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=1.2e-10  Score=104.27  Aligned_cols=83  Identities=16%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC--cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCcccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV--TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLK  399 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~--~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~  399 (421)
                      ..++.|++++|.++ ++   ......+.  +.+.+++|+++.||... ..+++|+.|+|++|+|+.++ ...+.++++|+
T Consensus       153 ~~l~~L~l~~n~l~~i~---~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~-~~~~~~l~~L~  228 (242)
T d1xwdc1         153 FESVILWLNKNGIQEIH---NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-SYGLENLKKLR  228 (242)
T ss_dssp             SSCEEEECCSSCCCEEC---TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC-SSSCTTCCEEE
T ss_pred             ccceeeecccccccccc---cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC-HHHHcCCcccc
Confidence            46778888888887 32   22223344  45567899999998754 88999999999999998876 56788899999


Q ss_pred             ccccccccCcccC
Q psy9363         400 YLNLASTNLRNIK  412 (421)
Q Consensus       400 ~L~Ls~N~l~~i~  412 (421)
                      .+++.+  +..+|
T Consensus       229 ~l~~~~--l~~lp  239 (242)
T d1xwdc1         229 ARSTYN--LKKLP  239 (242)
T ss_dssp             SSSEES--SSCSC
T ss_pred             cCcCCC--CCcCC
Confidence            988754  44443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.95  E-value=1.2e-09  Score=103.16  Aligned_cols=92  Identities=17%  Similarity=0.157  Sum_probs=61.6

Q ss_pred             hhhcCCCCCccEEEeeCcccc---hhhHHHHhccCCC-cEEEccCCcCcccC-----CCC--CCCCCCcEEECcCCCCCC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI---WADILKLLANFPV-TCLKLPSNRITTLD-----SVP--GMFSSLEELYLQENNIVD  385 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~---~~~i~~~~~~l~~-~~L~L~~N~l~~l~-----~~~--~~l~~L~~L~Ls~N~l~~  385 (421)
                      .+..+  ++|+.|+|++|.|+   ...+...+...++ ++|+|++|.|+...     ..+  .....|++|++++|+|..
T Consensus       210 ~l~~~--~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         210 GLAYC--QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             TGGGC--TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             hhcch--hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            34566  88889999999887   2334455667788 88999999887411     111  234678899999998843


Q ss_pred             CC---ccccc-CccccccccccccccCcc
Q psy9363         386 WG---EVNAL-GSLPNLKYLNLASTNLRN  410 (421)
Q Consensus       386 ~~---~~~~l-~~l~~L~~L~Ls~N~l~~  410 (421)
                      -.   ....+ ..+++|+.|+|++|++..
T Consensus       288 ~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         288 DAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            11   01122 246788899999998864

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.95  E-value=5e-10  Score=96.86  Aligned_cols=89  Identities=25%  Similarity=0.247  Sum_probs=75.5

Q ss_pred             CCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      +++++|+|++|.|+ .. ....+..+++ +.|+|++|.++.++... ..+++|+.|+|++|+|+.++ +..|.++++|++
T Consensus        29 ~~l~~L~Ls~N~i~~~~-~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~~  106 (192)
T d1w8aa_          29 LHTTELLLNDNELGRIS-SDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NKMFLGLHQLKT  106 (192)
T ss_dssp             TTCSEEECCSCCCCSBC-CSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEEC-SSSSTTCTTCCE
T ss_pred             CCCCEEEeCCCCCcccc-cccccCCCceEeeeeccccccccccccccccccccceeeeccccccccC-HHHHhCCCcccc
Confidence            68999999999996 11 1144677889 99999999999877654 78999999999999998876 668999999999


Q ss_pred             cccccccCcccCCC
Q psy9363         401 LNLASTNLRNIKLN  414 (421)
Q Consensus       401 L~Ls~N~l~~i~~p  414 (421)
                      |+|++|+|+.++.-
T Consensus       107 L~L~~N~l~~i~~~  120 (192)
T d1w8aa_         107 LNLYDNQISCVMPG  120 (192)
T ss_dssp             EECCSSCCCEECTT
T ss_pred             cccCCccccccCHH
Confidence            99999999987654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.90  E-value=4.3e-10  Score=94.65  Aligned_cols=113  Identities=18%  Similarity=0.085  Sum_probs=80.8

Q ss_pred             CCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCCC-CCcccccccccchhccccccCCcchhhHHHHHhhCCC
Q psy9363          21 FIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSSS-APAHSYLAEVVFFVHLGRTLCDEDFVKEGSLLHYLPK   98 (421)
Q Consensus        21 ~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~~-~p~~~~~~~~L~~L~L~~~~~~~~~~~~~~ll~~l~~   98 (421)
                      .+..|+++.|.+.   .+..+...+++|++|+| +|+++... ++.....+++|+.|+|++|.++ ++.++.. + ...+
T Consensus        43 ~~~~l~~~~~~~~---~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~-~l~~l~~-l-~~~~  116 (162)
T d1koha1          43 IDVVLNRRSSMAA---TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SERELDK-I-KGLK  116 (162)
T ss_dssp             CCCCTTSHHHHHH---HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC-CGGGHHH-H-TTCC
T ss_pred             chhhcchhhhHhh---hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc-cchhhhh-h-hccc
Confidence            3444444444443   33445567999999999 59888532 2334557889999999888773 3444433 3 3557


Q ss_pred             CceeeecCCCCCCccc-cchhHHHHHHhccCceeccCCccCh
Q psy9363          99 LSSLRFTKNPILAEER-VVSSREKTIARLGGLKLLNGSAIER  139 (421)
Q Consensus        99 L~~L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~ln~s~i~~  139 (421)
                      |+.|++++||+..... ...||..++..+|+|++||+..|++
T Consensus       117 L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LDg~~v~p  158 (162)
T d1koha1         117 LEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLDGHELPP  158 (162)
T ss_dssp             CSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEETTEECCC
T ss_pred             cceeecCCCCcCcCcccchhHHHHHHHHCCCCCEECcCCCcC
Confidence            9999999999976543 4578999999999999999998865

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.9e-10  Score=111.83  Aligned_cols=116  Identities=15%  Similarity=0.034  Sum_probs=81.5

Q ss_pred             CCCcEEECCCCCCCChhhHHHHHhcCCCCceeec-ccccCCC---CCCcccccccccchhccccccCCcc-hhhHHHHHh
Q psy9363          20 PFIEDLDLSRNLLASWFAVGEITCQLKHLRHLNL-RIRLKSS---SAPAHSYLAEVVFFVHLGRTLCDED-FVKEGSLLH   94 (421)
Q Consensus        20 ~~L~~L~Ls~N~ls~~~~i~~~~~~l~~L~~L~L-~N~l~~~---~~p~~~~~~~~L~~L~L~~~~~~~~-~~~~~~ll~   94 (421)
                      ++|+.||+++|.|++ ..+.+++..+++|++|+| +|.++..   .+...+..+++|++|+|++|.++.. +..+...+.
T Consensus         2 ~~l~~ld~~~~~i~~-~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~   80 (460)
T d1z7xw1           2 LDIQSLDIQCEELSD-ARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   80 (460)
T ss_dssp             EEEEEEEEESCCCCH-HHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             CCCCEEEeeCCcCCh-HHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence            478999999999997 466777888999999999 5877621   1223345678999999988876322 222222122


Q ss_pred             -hCCCCceeeecCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          95 -YLPKLSSLRFTKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        95 -~l~~L~~L~l~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                       ..++|++|+|++|.+++..  -......+..+++|+.|+++...
T Consensus        81 ~~~~~L~~L~L~~n~it~~~--~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          81 TPSCKIQKLSLQNCCLTGAG--CGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             STTCCCCEEECTTSCCBGGG--HHHHHHHTTSCTTCCEEECCSSB
T ss_pred             cCCCCCCEEECCCCCccccc--cccccchhhcccccccccccccc
Confidence             2358999999999985432  12234467788999999998644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.6e-09  Score=97.21  Aligned_cols=94  Identities=16%  Similarity=0.121  Sum_probs=58.8

Q ss_pred             hhcCCCCCccEEEeeCcc-cchhhHHHHhccCCC-cEEEccC-CcCccc-CCCCCCCCCCcEEECcCCCCCCCCcccccC
Q psy9363         318 EQIFPQGHIHTLTLGNMG-YIWADILKLLANFPV-TCLKLPS-NRITTL-DSVPGMFSSLEELYLQENNIVDWGEVNALG  393 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~-l~~~~i~~~~~~l~~-~~L~L~~-N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~  393 (421)
                      ...+  ++|++|+|++|. ++ ......+..+++ ++|+|++ +.++.- ...+..+++|+.|+++++ +.+.. ...+ 
T Consensus       171 ~~~~--~~L~~L~L~~~~~it-d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~-l~~l-  244 (284)
T d2astb2         171 VRRC--PNLVHLDLSDSVMLK-NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGT-LQLL-  244 (284)
T ss_dssp             HHHC--TTCSEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTC-HHHH-
T ss_pred             cccc--ccccccccccccCCC-chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHH-HHHH-
Confidence            3456  788888888754 65 222234556778 8888888 456521 112467889999999887 43322 2222 


Q ss_pred             ccccccccccccccCcccCCCCCCC
Q psy9363         394 SLPNLKYLNLASTNLRNIKLNKEGH  418 (421)
Q Consensus       394 ~l~~L~~L~Ls~N~l~~i~~p~~~~  418 (421)
                       ...+..|.++.+.++.+..|..+.
T Consensus       245 -~~~lp~L~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         245 -KEALPHLQINCSHFTTIARPTIGN  268 (284)
T ss_dssp             -HHHSTTSEESCCCSCCTTCSSCSS
T ss_pred             -HHhCccccccCccCCCCCCCccCc
Confidence             134555667888898887776643

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.84  E-value=1.7e-11  Score=107.01  Aligned_cols=104  Identities=24%  Similarity=0.314  Sum_probs=83.9

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~  377 (421)
                      +|+.+++++   ..++ .+..+  ++|+.|+|++|.|+ ++.+   ...++. ++|++++|+|+.++. +..+++|+.|+
T Consensus        49 ~L~~L~Ls~n~I~~i~-~l~~l--~~L~~L~Ls~N~i~~i~~~---~~~~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~  121 (198)
T d1m9la_          49 ACKHLALSTNNIEKIS-SLSGM--ENLRILSLGRNLIKKIENL---DAVADTLEELWISYNQIASLSG-IEKLVNLRVLY  121 (198)
T ss_dssp             TCCEEECSEEEESCCC-CHHHH--TTCCEEECCEEEECSCSSH---HHHHHHCCEEECSEEECCCHHH-HHHHHHSSEEE
T ss_pred             ccceeECcccCCCCcc-cccCC--ccccChhhccccccccccc---cccccccccccccccccccccc-ccccccccccc
Confidence            777888876   4454 47788  99999999999998 4432   333455 899999999998753 67789999999


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCcccCC
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      +++|+|++++.+..++.+++|+.|++++|++.....
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~  157 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK  157 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHC
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcc
Confidence            999999887656678999999999999999876443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.6e-08  Score=92.70  Aligned_cols=82  Identities=22%  Similarity=0.251  Sum_probs=62.6

Q ss_pred             CCccEEEeeCc--ccchhhHHHHhccCCC-cEEEccCC-cCcc-cCCCCCCCCCCcEEECcCC-CCCCCCcccccCcccc
Q psy9363         324 GHIHTLTLGNM--GYIWADILKLLANFPV-TCLKLPSN-RITT-LDSVPGMFSSLEELYLQEN-NIVDWGEVNALGSLPN  397 (421)
Q Consensus       324 ~~L~~L~Ls~N--~l~~~~i~~~~~~l~~-~~L~L~~N-~l~~-l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~  397 (421)
                      ++|+.|+++++  .++...+..+...+|+ ++|++++| .++. ....+..+++|++|+|+++ .+++-. +..++.+|+
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~-l~~L~~~~~  226 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPET-LLELGEIPT  226 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGG-GGGGGGCTT
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHH-HHHHhcCCC
Confidence            78999999875  4554456667778899 99999986 4662 2233577899999999994 675433 557888999


Q ss_pred             ccccccccc
Q psy9363         398 LKYLNLAST  406 (421)
Q Consensus       398 L~~L~Ls~N  406 (421)
                      |+.|+++++
T Consensus       227 L~~L~l~~~  235 (284)
T d2astb2         227 LKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEeeeCC
Confidence            999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=9.1e-09  Score=85.70  Aligned_cols=89  Identities=16%  Similarity=0.074  Sum_probs=60.7

Q ss_pred             CchhhhcCCCCCccEEEeeCc-ccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCCCCCcc
Q psy9363         314 SGVMEQIFPQGHIHTLTLGNM-GYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIVDWGEV  389 (421)
Q Consensus       314 ~~~~~~~l~~~~L~~L~Ls~N-~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~~~~~  389 (421)
                      .|..+..+  ++|++|++++| .|+ .+.  ..+..+++ +.|+|++|+|+.|++.. ..+++|+.|+|++|+|+.++ .
T Consensus        23 ~p~~l~~l--~~l~~L~l~~n~~l~~i~~--~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~-~   97 (156)
T d2ifga3          23 SLHHLPGA--ENLTELYIENQQHLQHLEL--RDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS-W   97 (156)
T ss_dssp             TTTTSCSC--SCCSEEECCSCSSCCEECG--GGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCC-S
T ss_pred             CcccccCc--cccCeeecCCCccccccCc--hhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccC-h
Confidence            34455566  78888888655 476 221  34566777 88888888888776543 67778888888888887665 3


Q ss_pred             cccCccccccccccccccC
Q psy9363         390 NALGSLPNLKYLNLASTNL  408 (421)
Q Consensus       390 ~~l~~l~~L~~L~Ls~N~l  408 (421)
                      ..+..+ .|+.|+|++|++
T Consensus        98 ~~~~~~-~l~~L~L~~Np~  115 (156)
T d2ifga3          98 KTVQGL-SLQELVLSGNPL  115 (156)
T ss_dssp             TTTCSC-CCCEEECCSSCC
T ss_pred             hhhccc-cccccccCCCcc
Confidence            444433 588888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.75  E-value=1.6e-08  Score=87.55  Aligned_cols=99  Identities=23%  Similarity=0.291  Sum_probs=79.6

Q ss_pred             CCCccCCCC---CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEE
Q psy9363         303 NTNKLPIPN---DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELY  377 (421)
Q Consensus       303 ~L~~l~l~~---~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~  377 (421)
                      +|+.+.++.   ..++ .+..+  +.|+.|++++|.+. .    ..+..+++ +.|++++|+++.++. +..+++|+.|+
T Consensus        85 ~L~~L~l~~n~~~~~~-~l~~l--~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~-l~~~~~L~~L~  156 (199)
T d2omxa2          85 KLVDILMNNNQIADIT-PLANL--TNLTGLTLFNNQITDI----DPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLN  156 (199)
T ss_dssp             TCCEEECCSSCCCCCG-GGTTC--TTCSEEECCSSCCCCC----GGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEE
T ss_pred             cccccccccccccccc-ccccc--cccccccccccccccc----cccchhhhhHHhhhhhhhhccccc-ccccccccccc
Confidence            667777765   2333 36778  89999999999887 3    23566788 999999999988763 67889999999


Q ss_pred             CcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         378 LQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       378 Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      +++|++++++   .++.+++|+.|++++|++++++
T Consensus       157 l~~n~l~~l~---~l~~l~~L~~L~ls~N~i~~i~  188 (199)
T d2omxa2         157 FSSNQVTDLK---PLANLTTLERLDISSNKVSDIS  188 (199)
T ss_dssp             CCSSCCCCCG---GGTTCTTCCEEECCSSCCCCCG
T ss_pred             cccccccCCc---cccCCCCCCEEECCCCCCCCCc
Confidence            9999997753   5889999999999999999875

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=2.7e-08  Score=90.93  Aligned_cols=105  Identities=20%  Similarity=0.212  Sum_probs=78.7

Q ss_pred             CCCccCCCC----CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcE
Q psy9363         303 NTNKLPIPN----DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEE  375 (421)
Q Consensus       303 ~L~~l~l~~----~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~  375 (421)
                      +|+.+.++.    ...+..+..+  ++|+.+++++|.|+ .+  +..+..++. +.|+|++|+|+.+++.. ..+++|+.
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~--~~L~~l~l~~N~l~~i~--~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~  181 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGL--AALQYLYLQDNALQALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR  181 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTC--TTCCEEECCSSCCCCCC--TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             cCCEEecCCcccccccccccchh--cccchhhhccccccccC--hhHhccccchhhcccccCcccccchhhhccccccch
Confidence            666666665    2234456667  88888888888887 22  244666777 88899999888876544 77888999


Q ss_pred             EECcCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         376 LYLQENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       376 L~Ls~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      +++++|++..+. +..+..+++|++|++++|++..++
T Consensus       182 l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~~~  217 (284)
T d1ozna_         182 LLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSALP  217 (284)
T ss_dssp             EECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             hhhhhccccccC-hhHhhhhhhccccccccccccccc
Confidence            999999887654 567888889999999999988754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.63  E-value=5e-08  Score=85.13  Aligned_cols=85  Identities=26%  Similarity=0.408  Sum_probs=54.4

Q ss_pred             hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEECcCCCCCCCCcccccCcc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYLQENNIVDWGEVNALGSL  395 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l  395 (421)
                      +..+  ++|+.|++++|.+. .    ..+..++. +.+++++|.++.++ ....+++|+.+++++|+++++.   .++.+
T Consensus       108 l~~l--~~L~~L~l~~~~~~~~----~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~---~l~~l  177 (210)
T d1h6ta2         108 LKDL--KKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIV---PLAGL  177 (210)
T ss_dssp             GTTC--TTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCG---GGTTC
T ss_pred             cccc--cccccccccccccccc----ccccccccccccccccccccccc-cccccccccccccccccccccc---cccCC
Confidence            4445  56666666666555 2    12344455 66666666665443 2356778888888888886533   47778


Q ss_pred             ccccccccccccCcccC
Q psy9363         396 PNLKYLNLASTNLRNIK  412 (421)
Q Consensus       396 ~~L~~L~Ls~N~l~~i~  412 (421)
                      ++|++|+|++|+|++++
T Consensus       178 ~~L~~L~Ls~N~i~~l~  194 (210)
T d1h6ta2         178 TKLQNLYLSKNHISDLR  194 (210)
T ss_dssp             TTCCEEECCSSCCCBCG
T ss_pred             CCCCEEECCCCCCCCCh
Confidence            88888888888887754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.57  E-value=2.1e-08  Score=94.28  Aligned_cols=91  Identities=23%  Similarity=0.202  Sum_probs=66.3

Q ss_pred             hhhcCCCCCccEEEeeCcccchhh----HHHHhccCCC-cEEEccCCcCcc-----cCCCCCCCCCCcEEECcCCCCCCC
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYIWAD----ILKLLANFPV-TCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDW  386 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~~~~----i~~~~~~l~~-~~L~L~~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~~  386 (421)
                      .+...  +.|+.|+|++|.|+-..    +...+...+. +.|+|++|.|+.     +...+..+++|++|+|++|.|.+-
T Consensus       181 ~l~~~--~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~  258 (344)
T d2ca6a1         181 TFQSH--RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR  258 (344)
T ss_dssp             HHHHC--TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHH
T ss_pred             hhhhh--hhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCch
Confidence            44567  89999999999998211    2233566788 999999999973     322346789999999999999653


Q ss_pred             Cccccc----C--ccccccccccccccCcc
Q psy9363         387 GEVNAL----G--SLPNLKYLNLASTNLRN  410 (421)
Q Consensus       387 ~~~~~l----~--~l~~L~~L~Ls~N~l~~  410 (421)
                      . ...+    .  ..+.|++|++++|+|+.
T Consensus       259 g-~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         259 G-AAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             H-HHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             h-hHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            2 2222    2  24679999999999864

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=4.7e-08  Score=81.23  Aligned_cols=87  Identities=20%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             CCccEEEeeCcccchhhHHHHhccCCC-cEEEccCC-cCcccCCC-CCCCCCCcEEECcCCCCCCCCcccccCccccccc
Q psy9363         324 GHIHTLTLGNMGYIWADILKLLANFPV-TCLKLPSN-RITTLDSV-PGMFSSLEELYLQENNIVDWGEVNALGSLPNLKY  400 (421)
Q Consensus       324 ~~L~~L~Ls~N~l~~~~i~~~~~~l~~-~~L~L~~N-~l~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~  400 (421)
                      .....++.+++.+.  .++..+..+++ ++|++++| .|+.|+.. +..+++|+.|+|++|+|+.++ +..|..+++|++
T Consensus         8 ~~~~~l~c~~~~~~--~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~   84 (156)
T d2ifga3           8 HGSSGLRCTRDGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSR   84 (156)
T ss_dssp             SSSSCEECCSSCCC--TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCE
T ss_pred             CCCCeEEecCCCCc--cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccc
Confidence            34566888888887  22344566778 99999766 59998865 488999999999999998876 668999999999


Q ss_pred             cccccccCcccCC
Q psy9363         401 LNLASTNLRNIKL  413 (421)
Q Consensus       401 L~Ls~N~l~~i~~  413 (421)
                      |+|++|+|+.++.
T Consensus        85 L~Ls~N~l~~l~~   97 (156)
T d2ifga3          85 LNLSFNALESLSW   97 (156)
T ss_dssp             EECCSSCCSCCCS
T ss_pred             eeccCCCCcccCh
Confidence            9999999997654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.47  E-value=2.7e-07  Score=81.21  Aligned_cols=100  Identities=21%  Similarity=0.261  Sum_probs=79.0

Q ss_pred             CCCccCCCC--CCCchhhhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCCCCCCCCcEEEC
Q psy9363         303 NTNKLPIPN--DTSGVMEQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVPGMFSSLEELYL  378 (421)
Q Consensus       303 ~L~~l~l~~--~~~~~~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~~~l~~L~~L~L  378 (421)
                      +|+.+.++.  ......+...  +.+..+.++++.+. +.    .+..+++ ++|++++|.++.++. +..+++|+.|+|
T Consensus       108 ~L~~l~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~L  180 (227)
T d1h6ua2         108 SIKTLDLTSTQITDVTPLAGL--SNLQVLYLDLNQITNIS----PLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA  180 (227)
T ss_dssp             TCCEEECTTSCCCCCGGGTTC--TTCCEEECCSSCCCCCG----GGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             cccccccccccccccchhccc--cchhhhhchhhhhchhh----hhccccccccccccccccccchh-hcccccceeccc
Confidence            566666654  1122335566  89999999999997 32    2456778 999999999987654 688999999999


Q ss_pred             cCCCCCCCCcccccCccccccccccccccCcccC
Q psy9363         379 QENNIVDWGEVNALGSLPNLKYLNLASTNLRNIK  412 (421)
Q Consensus       379 s~N~l~~~~~~~~l~~l~~L~~L~Ls~N~l~~i~  412 (421)
                      ++|++++++   .++.+++|++|+|++|+|++++
T Consensus       181 s~n~l~~l~---~l~~l~~L~~L~Ls~N~lt~i~  211 (227)
T d1h6ua2         181 DDNKISDIS---PLASLPNLIEVHLKNNQISDVS  211 (227)
T ss_dssp             CSSCCCCCG---GGGGCTTCCEEECTTSCCCBCG
T ss_pred             CCCccCCCh---hhcCCCCCCEEECcCCcCCCCc
Confidence            999998743   5889999999999999999875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.5e-07  Score=78.56  Aligned_cols=65  Identities=23%  Similarity=0.300  Sum_probs=31.6

Q ss_pred             hhcCCCCCccEEEeeCcccc-hhhHHHHhccCCC-cEEEccCCcCcccCCCC-CCCCCCcEEECcCCCCC
Q psy9363         318 EQIFPQGHIHTLTLGNMGYI-WADILKLLANFPV-TCLKLPSNRITTLDSVP-GMFSSLEELYLQENNIV  384 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~~-~~L~L~~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~  384 (421)
                      +..+  ++|++|+|++|+|+ ...+...+..+++ +.|+|++|+|+.++.-. .....|+.|++++|.+.
T Consensus        61 ~~~~--~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          61 EENI--PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHC--TTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHhC--CCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            3445  55555555555555 3222233344555 55555555555544311 12234555555555553

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.96  E-value=8.8e-06  Score=67.75  Aligned_cols=129  Identities=8%  Similarity=0.062  Sum_probs=89.6

Q ss_pred             hHHhhhCCCCcEEECCC-CCCCC--hhhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccccccCCcc
Q psy9363          13 DEIEQAVPFIEDLDLSR-NLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLGRTLCDED   85 (421)
Q Consensus        13 ~~~~~~~~~L~~L~Ls~-N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~~~~~~~~   85 (421)
                      +.+...+++|++|+|++ |.+++  +..+...+...+.|++|+| .|.+....   +...+...+.|++|+|++|.++..
T Consensus         8 ~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~   87 (167)
T d1pgva_           8 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE   87 (167)
T ss_dssp             HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred             HHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchH
Confidence            45566689999999997 46874  3456677778899999999 48776211   111233457899999988877544


Q ss_pred             -hhhHHHHHhhCCCCceeeecCCCCCCccc-cchhHHHHHHhccCceeccCCccChhh
Q psy9363          86 -FVKEGSLLHYLPKLSSLRFTKNPILAEER-VVSSREKTIARLGGLKLLNGSAIERQE  141 (421)
Q Consensus        86 -~~~~~~ll~~l~~L~~L~l~~N~l~~~~~-~~~~~~~~i~~l~~L~~ln~s~i~~~~  141 (421)
                       ...+...+...+.|++|++++|.+..... .......++...++|+.|+.+......
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~~~  145 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA  145 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred             HHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCchH
Confidence             44555557888999999999997543211 112234567888999999987655443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.2e-05  Score=70.63  Aligned_cols=92  Identities=13%  Similarity=0.121  Sum_probs=68.2

Q ss_pred             hhhcCCCCCccEEEeeCcccc-hhhHHHHhccCC-C-cEEEccCCcCcccCCCCCCCCCCcEE-ECcCCCCCCCCccccc
Q psy9363         317 MEQIFPQGHIHTLTLGNMGYI-WADILKLLANFP-V-TCLKLPSNRITTLDSVPGMFSSLEEL-YLQENNIVDWGEVNAL  392 (421)
Q Consensus       317 ~~~~l~~~~L~~L~Ls~N~l~-~~~i~~~~~~l~-~-~~L~L~~N~l~~l~~~~~~l~~L~~L-~Ls~N~l~~~~~~~~l  392 (421)
                      ....+  +.+..+..+++.+. ...  ..+..++ . ..|++++|+++.++.......+++.+ ++++|+|+.++ ...+
T Consensus       123 ~~~~l--~~l~~~~~~n~~l~~i~~--~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~-~~~f  197 (242)
T d1xwdc1         123 KIHSL--QKVLLDIQDNINIHTIER--NSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELP-NDVF  197 (242)
T ss_dssp             TTCBS--SCEEEEEESCTTCCEECT--TSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCC-TTTT
T ss_pred             ccccc--cccccccccccccccccc--cccccccccceeeecccccccccccccccchhhhcccccccccccccc-HHHh
Confidence            34456  77777788888876 322  2233344 4 78999999999998766566666665 67889998776 4568


Q ss_pred             CccccccccccccccCcccCC
Q psy9363         393 GSLPNLKYLNLASTNLRNIKL  413 (421)
Q Consensus       393 ~~l~~L~~L~Ls~N~l~~i~~  413 (421)
                      ..+++|+.|+|++|+|+.++.
T Consensus       198 ~~l~~L~~L~Ls~N~l~~l~~  218 (242)
T d1xwdc1         198 HGASGPVILDISRTRIHSLPS  218 (242)
T ss_dssp             TTSCCCSEEECTTSCCCCCCS
T ss_pred             cCCCCCCEEECCCCcCCccCH
Confidence            899999999999999997653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.58  E-value=3.1e-05  Score=64.14  Aligned_cols=123  Identities=11%  Similarity=0.081  Sum_probs=83.5

Q ss_pred             HHhhhCCCCcEEECCC-CCCCC--hhhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccccccCCcc-
Q psy9363          14 EIEQAVPFIEDLDLSR-NLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLGRTLCDED-   85 (421)
Q Consensus        14 ~~~~~~~~L~~L~Ls~-N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~~~~~~~~-   85 (421)
                      .+....++|++|+|++ |.|+.  +..+...+...++|++|+| .|.+....   +-..+...++++.+++++|.+++. 
T Consensus        11 ~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g   90 (166)
T d1io0a_          11 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG   90 (166)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred             HHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchh
Confidence            4455679999999998 56874  4456677778999999999 48776311   111223457899999988777444 


Q ss_pred             hhhHHHHHhhCCCCceeee--cCCCCCCccccchhHHHHHHhccCceeccCCccC
Q psy9363          86 FVKEGSLLHYLPKLSSLRF--TKNPILAEERVVSSREKTIARLGGLKLLNGSAIE  138 (421)
Q Consensus        86 ~~~~~~ll~~l~~L~~L~l--~~N~l~~~~~~~~~~~~~i~~l~~L~~ln~s~i~  138 (421)
                      ...+...+...++|+.++|  ++|++....  .......+.+.++|+.|++..-.
T Consensus        91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~--~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          91 ILALVEALQSNTSLIELRIDNQSQPLGNNV--EMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHGGGGCSSCCEEECCCCSSCCCHHH--HHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHHHHhCccccEEeeccCCCcCcHHH--HHHHHHHHHhCCCcCEEeCcCCC
Confidence            3334444778899987555  577774321  22344568899999999886433

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.16  E-value=8.2e-05  Score=61.59  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=58.5

Q ss_pred             hhcCCCCCccEEEeeCcccc---hhhHHHHhccCCC-cEEEccCCcCcc-----cCCCCCCCCCCcEEECcCCCCCCCCc
Q psy9363         318 EQIFPQGHIHTLTLGNMGYI---WADILKLLANFPV-TCLKLPSNRITT-----LDSVPGMFSSLEELYLQENNIVDWGE  388 (421)
Q Consensus       318 ~~~l~~~~L~~L~Ls~N~l~---~~~i~~~~~~l~~-~~L~L~~N~l~~-----l~~~~~~l~~L~~L~Ls~N~l~~~~~  388 (421)
                      +...  +.|+.|+|++|.+.   ...+...+...+. ++|+|++|.|+.     +-..+...++|++|+|++|.+..+..
T Consensus        40 L~~n--~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~  117 (167)
T d1pgva_          40 ACNS--KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGN  117 (167)
T ss_dssp             HTTC--SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCH
T ss_pred             HhhC--CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccH
Confidence            4455  77888999988887   2344455556677 889999888873     11123556788899998887654331


Q ss_pred             ------ccccCccccccccccccccC
Q psy9363         389 ------VNALGSLPNLKYLNLASTNL  408 (421)
Q Consensus       389 ------~~~l~~l~~L~~L~Ls~N~l  408 (421)
                            ...+..-++|+.|+++.+..
T Consensus       118 ~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_         118 QVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             HHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHHHHhCCCccEeeCcCCCc
Confidence                  12334457788888876643

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.90  E-value=0.0049  Score=50.15  Aligned_cols=92  Identities=10%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             hCCCCcEEECCCCCCCC--hhhHHHHHhcCCCCceeec-ccccCCCC---CCcccccccccchhccc--cccCCcc-hhh
Q psy9363          18 AVPFIEDLDLSRNLLAS--WFAVGEITCQLKHLRHLNL-RIRLKSSS---APAHSYLAEVVFFVHLG--RTLCDED-FVK   88 (421)
Q Consensus        18 ~~~~L~~L~Ls~N~ls~--~~~i~~~~~~l~~L~~L~L-~N~l~~~~---~p~~~~~~~~L~~L~L~--~~~~~~~-~~~   88 (421)
                      .+++|++|+|++|.+++  +..+...+...++|+.|++ .|.+....   +-..+...++|+.++|+  .|.++.. ...
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            57889999999999985  3456677888899999999 57665211   11123345678876664  4444222 334


Q ss_pred             HHHHHhhCCCCceeeecCCCC
Q psy9363          89 EGSLLHYLPKLSSLRFTKNPI  109 (421)
Q Consensus        89 ~~~ll~~l~~L~~L~l~~N~l  109 (421)
                      +...+.+.+.|+.|+++.+..
T Consensus       124 La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCCCcCEEeCcCCCC
Confidence            555588999999999988764