Psyllid ID: psy9364

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
MHVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPERRRTL
cHHHHHHHHHccccEEEEccccccccccEEEEcccccccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccccccccccHHHHHccccccccccccccccccccc
ccHHHHHHHHcccEEEEEccccccccccEEEEcccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccEEEccccEEEcHHHccccccccccHHEEEEEEHHHHHHHHHccccccHccc
mhvqgmvksthgsykvtyhpdgpesgspveidftppfrrlhmfPALEAalgvklpnptefdtpeaNKFLSDLCVkhevecppprtsARLLDKLVGEFLeetcinptficdhpqvmsplakwhrdhpglterFELFVMKKEEvllfpamrperrrtl
mhvqgmvksthgsykvtyhpdgpesgspvEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEevllfpamrperrrtl
MHVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPERRRTL
******************************IDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFP**********
MHVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPERRRTL
***********GSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPERRRTL
*HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPER****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MHVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPERRRTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query156 2.2.26 [Sep-21-2011]
P37879597 Lysine--tRNA ligase OS=Cr yes N/A 0.980 0.256 0.690 6e-57
Q99MN1595 Lysine--tRNA ligase OS=Mu yes N/A 0.980 0.257 0.677 3e-56
Q15046597 Lysine--tRNA ligase OS=Ho yes N/A 0.980 0.256 0.677 6e-56
Q6F2U9602 Lysine--tRNA ligase OS=Or yes N/A 0.865 0.224 0.615 2e-45
Q9UUE6591 Lysine--tRNA ligase, cyto yes N/A 0.878 0.231 0.608 6e-43
Q9ZPI1626 Lysine--tRNA ligase OS=Ar yes N/A 0.865 0.215 0.579 9e-43
Q22099572 Lysine--tRNA ligase OS=Ca yes N/A 0.884 0.241 0.557 9e-43
Q43776588 Lysine--tRNA ligase OS=So N/A N/A 0.865 0.229 0.543 2e-39
P15180591 Lysine--tRNA ligase, cyto yes N/A 0.858 0.226 0.533 1e-36
C4V8R9514 Probable lysine--tRNA lig N/A N/A 0.878 0.266 0.460 2e-28
>sp|P37879|SYK_CRIGR Lysine--tRNA ligase OS=Cricetulus griseus GN=KARS PE=1 SV=1 Back     alignment and function desciption
 Score =  219 bits (558), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 107/155 (69%), Positives = 118/155 (76%), Gaps = 2/155 (1%)

Query: 3   VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
           + GMVKS  GSYK+TYHPDGPE G   EIDFTPPFRR+ M   LE ALGVKLP  + F+T
Sbjct: 358 LSGMVKSITGSYKITYHPDGPE-GEAYEIDFTPPFRRISMVEELEKALGVKLPETSLFET 416

Query: 63  PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
            E  K L D+CV   VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 417 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 476

Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
           R   GLTERFELFVMKKE    +  +  P R+R L
Sbjct: 477 RSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 511
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA.
Cricetulus griseus (taxid: 10029)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 6
>sp|Q99MN1|SYK_MOUSE Lysine--tRNA ligase OS=Mus musculus GN=Kars PE=1 SV=1 Back     alignment and function description
>sp|Q15046|SYK_HUMAN Lysine--tRNA ligase OS=Homo sapiens GN=KARS PE=1 SV=3 Back     alignment and function description
>sp|Q6F2U9|SYK_ORYSJ Lysine--tRNA ligase OS=Oryza sativa subsp. japonica GN=Os03g0586800 PE=2 SV=1 Back     alignment and function description
>sp|Q9UUE6|SYKC_SCHPO Lysine--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=krs1 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZPI1|SYK_ARATH Lysine--tRNA ligase OS=Arabidopsis thaliana GN=At3g11710 PE=2 SV=1 Back     alignment and function description
>sp|Q22099|SYK_CAEEL Lysine--tRNA ligase OS=Caenorhabditis elegans GN=krs-1 PE=2 SV=1 Back     alignment and function description
>sp|Q43776|SYK_SOLLC Lysine--tRNA ligase OS=Solanum lycopersicum GN=LYSRS PE=2 SV=1 Back     alignment and function description
>sp|P15180|SYKC_YEAST Lysine--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=KRS1 PE=1 SV=2 Back     alignment and function description
>sp|C4V8R9|SYKC_NOSCE Probable lysine--tRNA ligase, cytoplasmic OS=Nosema ceranae (strain BRL01) GN=NCER_100909 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
328712348 595 PREDICTED: lysyl-tRNA synthetase-like is 0.884 0.231 0.776 4e-60
328712346 579 PREDICTED: lysyl-tRNA synthetase-like is 0.884 0.238 0.776 4e-60
328712350 610 PREDICTED: lysyl-tRNA synthetase-like is 0.884 0.226 0.776 4e-60
350401411 588 PREDICTED: lysyl-tRNA synthetase-like [B 0.878 0.232 0.739 2e-57
322792670 584 hypothetical protein SINV_10183 [Solenop 0.878 0.234 0.746 4e-57
340729128 589 PREDICTED: lysyl-tRNA synthetase-like [B 0.878 0.232 0.731 6e-57
380013683 585 PREDICTED: lysine--tRNA ligase-like [Api 0.878 0.234 0.731 8e-57
389611239 578 lysyl-tRNA synthetase [Papilio polytes] 0.878 0.237 0.768 3e-56
157106533 588 lysyl-tRNA synthetase [Aedes aegypti] gi 0.878 0.232 0.731 3e-56
156542803 585 PREDICTED: lysyl-tRNA synthetase-like [N 0.878 0.234 0.739 6e-56
>gi|328712348|ref|XP_001951614.2| PREDICTED: lysyl-tRNA synthetase-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 108/139 (77%), Positives = 121/139 (87%), Gaps = 1/139 (0%)

Query: 3   VQGMVKSTHGSYKVTYHPDGPESGS-PVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFD 61
           + G+VKS +G+YK+ YHPDG ++ +  VEIDFTPPF+R++MFPALE  L VKLPNPTE  
Sbjct: 358 LSGLVKSIYGTYKIKYHPDGVDANTEAVEIDFTPPFKRMYMFPALEEILSVKLPNPTELA 417

Query: 62  TPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKW 121
           T EANK L DLC+KHE+ECPPPRTSARLLDKLVGEFLEE CINPTFICDHPQVMSPLAKW
Sbjct: 418 TVEANKLLDDLCLKHEIECPPPRTSARLLDKLVGEFLEEKCINPTFICDHPQVMSPLAKW 477

Query: 122 HRDHPGLTERFELFVMKKE 140
           HR  PGLTERFELFVMKKE
Sbjct: 478 HRSIPGLTERFELFVMKKE 496

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328712346|ref|XP_003244783.1| PREDICTED: lysyl-tRNA synthetase-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328712350|ref|XP_003244784.1| PREDICTED: lysyl-tRNA synthetase-like isoform 3 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350401411|ref|XP_003486141.1| PREDICTED: lysyl-tRNA synthetase-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|322792670|gb|EFZ16544.1| hypothetical protein SINV_10183 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340729128|ref|XP_003402860.1| PREDICTED: lysyl-tRNA synthetase-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380013683|ref|XP_003690879.1| PREDICTED: lysine--tRNA ligase-like [Apis florea] Back     alignment and taxonomy information
>gi|389611239|dbj|BAM19231.1| lysyl-tRNA synthetase [Papilio polytes] Back     alignment and taxonomy information
>gi|157106533|ref|XP_001649366.1| lysyl-tRNA synthetase [Aedes aegypti] gi|108868817|gb|EAT33042.1| AAEL014702-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|156542803|ref|XP_001607568.1| PREDICTED: lysyl-tRNA synthetase-like [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query156
FB|FBgn0027084607 Aats-lys "Lysyl-tRNA synthetas 0.878 0.225 0.688 9.9e-54
UNIPROTKB|E2RSP4625 KARS "Lysine--tRNA ligase" [Ca 0.980 0.244 0.683 3.8e-53
MGI|MGI:1934754595 Kars "lysyl-tRNA synthetase" [ 0.980 0.257 0.677 4.9e-53
UNIPROTKB|Q15046597 KARS "Lysine--tRNA ligase" [Ho 0.980 0.256 0.677 6.3e-53
UNIPROTKB|F1S458625 KARS "Lysine--tRNA ligase" [Su 0.980 0.244 0.683 6.3e-53
UNIPROTKB|F1MMK8623 KARS "Lysine--tRNA ligase" [Bo 0.980 0.245 0.670 1e-52
ZFIN|ZDB-GENE-021115-8602 kars "lysyl-tRNA synthetase" [ 0.980 0.254 0.670 1.7e-52
RGD|1359653626 Kars "lysyl-tRNA synthetase" [ 0.980 0.244 0.670 3.5e-52
UNIPROTKB|D4ABR8597 Kars "Lysine--tRNA ligase" [Ra 0.980 0.256 0.670 3.5e-52
UNIPROTKB|E1C3E0581 KARS "Lysine--tRNA ligase" [Ga 0.980 0.263 0.651 2.4e-51
FB|FBgn0027084 Aats-lys "Lysyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 519 (187.8 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 95/138 (68%), Positives = 110/138 (79%)

Query:     3 VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
             V GMVK+  GSYKV YHP+GPE G   E+DFTPPF+R+ M   LE  L VK P    F++
Sbjct:   374 VSGMVKAIRGSYKVIYHPEGPE-GPEQELDFTPPFKRVSMIKTLEEKLQVKFPAADTFNS 432

Query:    63 PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
             PE N+FLS LC KH+VECP PRT+ARLLDKLVGEF+EE C+NPTFIC+HPQ+MSPLAK+H
Sbjct:   433 PETNQFLSQLCAKHQVECPAPRTTARLLDKLVGEFIEEFCVNPTFICEHPQIMSPLAKYH 492

Query:   123 RDHPGLTERFELFVMKKE 140
             R  PGLTERFELFV KKE
Sbjct:   493 RSIPGLTERFELFVAKKE 510
GO:0006430 "lysyl-tRNA aminoacylation" evidence=ISS;NAS
GO:0004824 "lysine-tRNA ligase activity" evidence=ISS;NAS
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|E2RSP4 KARS "Lysine--tRNA ligase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1934754 Kars "lysyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q15046 KARS "Lysine--tRNA ligase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S458 KARS "Lysine--tRNA ligase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1MMK8 KARS "Lysine--tRNA ligase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021115-8 kars "lysyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1359653 Kars "lysyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4ABR8 Kars "Lysine--tRNA ligase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3E0 KARS "Lysine--tRNA ligase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q22099SYK_CAEEL6, ., 1, ., 1, ., 60.55790.88460.2412yesN/A
Q9ZPI1SYK_ARATH6, ., 1, ., 1, ., 60.57970.86530.2156yesN/A
Q15046SYK_HUMAN6, ., 1, ., 1, ., 60.67740.98070.2562yesN/A
Q6F2U9SYK_ORYSJ6, ., 1, ., 1, ., 60.61590.86530.2242yesN/A
Q9UUE6SYKC_SCHPO6, ., 1, ., 1, ., 60.60860.87820.2318yesN/A
Q99MN1SYK_MOUSE6, ., 1, ., 1, ., 60.67740.98070.2571yesN/A
P15180SYKC_YEAST6, ., 1, ., 1, ., 60.53330.85890.2267yesN/A
P37879SYK_CRIGR6, ., 1, ., 1, ., 60.69030.98070.2562yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
PLN02502553 PLN02502, PLN02502, lysyl-tRNA synthetase 2e-61
cd00775329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 2e-55
COG1190502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 4e-39
PRK00484491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 4e-37
PTZ00417585 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona 3e-34
PTZ00385 659 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi 2e-30
TIGR00499496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 1e-29
PRK029831094 PRK02983, lysS, lysyl-tRNA synthetase; Provisional 1e-14
pfam00152345 pfam00152, tRNA-synt_2, tRNA synthetases class II 2e-11
PRK12445505 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe 5e-07
TIGR00462290 TIGR00462, genX, EF-P lysine aminoacylase GenX 3e-05
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase Back     alignment and domain information 
 Score =  197 bits (503), Expect = 2e-61
 Identities = 73/139 (52%), Positives = 90/139 (64%), Gaps = 10/139 (7%)

Query: 2   HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFD 61
            V GMVK   GSYK+ YH         +EIDFTPPFRR+ M   +E A G+  P      
Sbjct: 342 MVSGMVKELTGSYKIKYHG--------IEIDFTPPFRRISMISLVEEATGIDFPAD--LK 391

Query: 62  TPEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKW 121
           + EAN +L   C K +V+CPPP+T+ RLL++L  EFLEET + PTF+ DHP  MSPLAK 
Sbjct: 392 SDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKP 451

Query: 122 HRDHPGLTERFELFVMKKE 140
           HR  PGLTERFELF+  +E
Sbjct: 452 HRSKPGLTERFELFINGRE 470

Length = 553
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|232984 TIGR00462, genX, EF-P lysine aminoacylase GenX Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 156
COG1190502 LysU Lysyl-tRNA synthetase (class II) [Translation 100.0
KOG1885|consensus560 100.0
PLN02502553 lysyl-tRNA synthetase 100.0
PTZ00385 659 lysyl-tRNA synthetase; Provisional 100.0
PTZ00417585 lysine-tRNA ligase; Provisional 100.0
TIGR00499496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 100.0
PRK12445505 lysyl-tRNA synthetase; Reviewed 100.0
PRK00484491 lysS lysyl-tRNA synthetase; Reviewed 100.0
PRK029831094 lysS lysyl-tRNA synthetase; Provisional 99.98
COG2269322 Truncated, possibly inactive, lysyl-tRNA synthetas 99.97
cd00775329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 99.97
TIGR00462304 genX lysyl-tRNA synthetase-like protein GenX. Many 99.95
PRK09350306 poxB regulator PoxA; Provisional 99.95
PRK05159437 aspC aspartyl-tRNA synthetase; Provisional 99.86
cd00776322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 99.86
PF00152335 tRNA-synt_2: tRNA synthetases class II (D, K and N 99.83
TIGR00458428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 99.82
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 99.77
TIGR00459583 aspS_bact aspartyl-tRNA synthetase, bacterial type 99.77
PTZ00401550 aspartyl-tRNA synthetase; Provisional 99.71
PLN02850530 aspartate-tRNA ligase 99.69
PRK06462335 asparagine synthetase A; Reviewed 99.68
TIGR00457453 asnS asparaginyl-tRNA synthetase. In a multiple se 99.56
PRK03932450 asnC asparaginyl-tRNA synthetase; Validated 99.54
cd00777280 AspRS_core Asp tRNA synthetase (aspRS) class II co 99.54
PLN02221572 asparaginyl-tRNA synthetase 99.46
PLN02603565 asparaginyl-tRNA synthetase 99.38
PLN02532633 asparagine-tRNA synthetase 99.34
PTZ00425586 asparagine-tRNA ligase; Provisional 99.1
COG0017435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 99.02
KOG0556|consensus533 98.06
KOG0554|consensus446 97.69
KOG0555|consensus545 97.62
PRK00476588 aspS aspartyl-tRNA synthetase; Validated 97.02
COG0173585 AspS Aspartyl-tRNA synthetase [Translation, riboso 96.88
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 95.4
PLN02903652 aminoacyl-tRNA ligase 95.29
KOG2411|consensus628 90.98
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-44  Score=312.14  Aligned_cols=141  Identities=40%  Similarity=0.666  Sum_probs=130.0

Q ss_pred             hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364           2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP   81 (156)
Q Consensus         2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~   81 (156)
                      ||+.+|+.++|+++|.|+        +.+|||++||+|++|.||+++++|+++...  .+    .+.++++|+++++++.
T Consensus       293 Li~~~a~~v~gt~~v~y~--------~~~id~~~pf~ri~m~dal~e~~g~~~~~~--~~----~e~~~~~ak~~~i~~~  358 (502)
T COG1190         293 LIKELAKEVNGTTKVTYG--------GQEIDFSKPFKRITMVDALKEYLGVDFDDL--FD----DEEAKELAKKHGIEVE  358 (502)
T ss_pred             HHHHHHHHhcCCeEEEEC--------CEeEecCCCeeeeehHHHHHHHhCcccccc--CC----HHHHHHHHHHhCCCcC
Confidence            789999999999999996        689999999999999999999999863322  12    4689999999999987


Q ss_pred             CC--CCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhcC
Q psy9364          82 PP--RTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRTL  156 (156)
Q Consensus        82 ~~--~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r~  156 (156)
                      +.  |+++++++++|+++||++|+|||||+|||.++|||||.|+++|++++||||||+|+|+||||||||||  ||+|.
T Consensus       359 ~~~~~~~g~ll~~lFe~~vE~~liqPTFv~d~P~eiSPLak~~~~~p~~teRFElfi~g~EiaNaysELNDP~dQ~~RF  437 (502)
T COG1190         359 KYGTWGLGHLLNELFEELVEAKLIQPTFVTDHPVEISPLAKRHRSNPGLTERFELFIGGKEIANAYSELNDPVDQRERF  437 (502)
T ss_pred             ccccccHHHHHHHHHHHHhhhhhcCCceeecCccccCccccCCCCCcchhhhheeeeccEEeeeccchhcCHHHHHHHH
Confidence            65  77999999999999999999999999999999999999999999999999999999999999999999  98873

>KOG1885|consensus Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0556|consensus Back     alignment and domain information
>KOG0554|consensus Back     alignment and domain information
>KOG0555|consensus Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>KOG2411|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
4dpg_A513 Crystal Structure Of Human Lysrs: P38/aimp2 Complex 2e-56
3bju_A521 Crystal Structure Of Tetrameric Form Of Human Lysyl 2e-56
3e9h_A493 Lysyl-Trna Synthetase From Bacillus Stearothermophi 2e-14
1bbu_A504 Lysyl-Trna Synthetase (Lyss) Complexed With Lysine 6e-07
1lyl_A504 Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe 2e-06
4ex5_A529 Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr 4e-05
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 117/155 (75%), Gaps = 2/155 (1%)
Query: 3   VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
           V GMVK   GSYKVTYHPDGPE G   ++DFTPPFRR++M   LE ALG+KLP    F+T
Sbjct: 290 VSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFET 348
Query: 63  PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
            E  K L D+CV   VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 349 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 408
Query: 123 RDHPGLTERFELFVMKKEEVLLFPAMR-PERRRTL 156
           R   GLTERFELFVMKKE    +  +  P R+R L
Sbjct: 409 RSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL 443
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 Back     alignment and structure
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 Back     alignment and structure
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query156
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 9e-68
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 6e-35
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 2e-34
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 1e-33
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 5e-21
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 Back     alignment and structure
 Score =  212 bits (543), Expect = 9e-68
 Identities = 101/138 (73%), Positives = 110/138 (79%), Gaps = 1/138 (0%)

Query: 3   VQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDT 62
           V GMVK   GSYKVTYHPDGPE G   ++DFTPPFRR++M   LE ALG+KLP    F+T
Sbjct: 290 VSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFET 348

Query: 63  PEANKFLSDLCVKHEVECPPPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWH 122
            E  K L D+CV   VECPPPRT+ARLLDKLVGEFLE TCINPTFICDHPQ+MSPLAKWH
Sbjct: 349 EETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWH 408

Query: 123 RDHPGLTERFELFVMKKE 140
           R   GLTERFELFVMKKE
Sbjct: 409 RSKEGLTERFELFVMKKE 426
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
3bju_A521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
4ex5_A529 Lysine--tRNA ligase; structural genomics, niaid, n 100.0
3a74_A493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 99.98
1e1o_A504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 99.98
3a5y_A345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 99.93
3nem_A438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 99.89
3m4p_A456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 99.88
1wyd_A429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 99.86
2xgt_A435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 99.84
1n9w_A422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 99.84
3i7f_A548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 99.82
1x54_A434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 99.82
1l0w_A580 Aspartyl-tRNA synthetase; space-grown crystal, dim 99.78
1eov_A487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 99.78
1c0a_A585 Aspartyl tRNA synthetase; protein-RNA complex, lig 99.72
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 99.36
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 97.87
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.1e-35  Score=258.62  Aligned_cols=153  Identities=67%  Similarity=1.164  Sum_probs=137.6

Q ss_pred             hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364           2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP   81 (156)
Q Consensus         2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~   81 (156)
                      +|+++++.++|+..+.|+..+++ +....+||+.||+|+||.||+++++|+++.+..+++++++.+.|.+++++.|+++.
T Consensus       289 li~~v~~~v~~~~~~~~~~~~~d-~~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~  367 (521)
T 3bju_A          289 MVSGMVKHITGSYKVTYHPDGPE-GQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECP  367 (521)
T ss_dssp             HHHHHHHHHHSSSEEEECTTCTT-SCCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhCCceEEecccccc-cccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCC
Confidence            68899999999999999755443 23458999999999999999999999998754456665566889999999999988


Q ss_pred             CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364          82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT  155 (156)
Q Consensus        82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r  155 (156)
                      ..++++++++++|+++||+++++||||+|||.++|||||.++++|++++||||||+|+||||||+|||||  ||+|
T Consensus       368 ~~~~~~~~l~~~~e~~ve~~l~~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~Ei~ng~~el~Dp~~qr~r  443 (521)
T 3bju_A          368 PPRTTARLLDKLVGEFLEVTCINPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKKEICNAYTELNDPMRQRQL  443 (521)
T ss_dssp             SCCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcCCcEEEECCccccCcccccCCCCCCeeeeEEEEEcceeeecChhhhCCHHHHHHH
Confidence            8889999999999999999999999999999999999999999999999999999999999999999999  8876
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 156
d1e1oa2342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 6e-08
d1n9wa2304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 6e-04
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

 Score = 48.3 bits (114), Expect = 6e-08
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 5/111 (4%)

Query: 30  EIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECPPPRTSARL 89
             DF  PF +L M  A++     K    T+    +       L     +         R+
Sbjct: 156 VFDFGKPFEKLTMREAIK-----KYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRI 210

Query: 90  LDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKE 140
           + ++  E  E   I PTFI ++P  +SPLA+ +  +P +T+RFE F+  +E
Sbjct: 211 VTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGRE 261
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query156
d1e1oa2342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 99.91
d1b8aa2335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 99.74
d1eova2353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 99.72
d1n9wa2304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.69
d1l0wa3356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.34
d1c0aa3346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 99.32
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 99.18
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=99.91  E-value=2.7e-24  Score=178.18  Aligned_cols=141  Identities=25%  Similarity=0.355  Sum_probs=123.4

Q ss_pred             hHHHHHHHhcCCcEEEecCCCCCCCCCeEecCCCCceeeeHHHHHHHHhCCCCCCCCCCChHHHHHHHHHHHHHcCCCCC
Q psy9364           2 HVQGMVKSTHGSYKVTYHPDGPESGSPVEIDFTPPFRRLHMFPALEAALGVKLPNPTEFDTPEANKFLSDLCVKHEVECP   81 (156)
Q Consensus         2 ~l~~~~~~~~g~~~i~~~~~~~~~~~~~~id~~~pf~rit~~ea~~~~~Gid~~~~~~~~~~~~~~~l~~~~~~~~i~~~   81 (156)
                      +++++++.+.|+....|.        ....++..||.|+++.++++++.+......  .+.   .+....+++..|+...
T Consensus       136 l~~~i~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~  202 (342)
T d1e1oa2         136 LFRTLAQEVLGTTKVTYG--------EHVFDFGKPFEKLTMREAIKKYRPETDMAD--LDN---FDAAKALAESIGITVE  202 (342)
T ss_dssp             HHHHHHHHHHSSSEEEET--------TEEEETTSCCEEEEHHHHHHHHSTTCCGGG--GGS---HHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHhCcchhhcc--------chhcccCCchhhhhHHHHHHHHhccccHhh--hhh---hHHHHHHHHHcCCCcc
Confidence            577888899999999985        578999999999999999999986533211  111   3556778888999999


Q ss_pred             CCCCHHHHHHHHHHHhhhcccCCcEEEecCCCCCcccccccCCCCCceeeeeeeecCEeeecCCcccchh--hhhc
Q psy9364          82 PPRTSARLLDKLVGEFLEETCINPTFICDHPQVMSPLAKWHRDHPGLTERFELFVMKKEEVLLFPAMRPE--RRRT  155 (156)
Q Consensus        82 ~~~~~~~ll~~lf~~~vEp~l~~PtFI~dyP~~~spLAk~~~~~~~~~eRFELfi~G~ElaNgysELnDp--qr~r  155 (156)
                      +.+++++++.++++..+++++.+|+||+|||++++||++.+++++.+++|||||++|.||||||.|+||+  |++|
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~p~fi~~~P~~~~~f~~~~~~~~~~~~~fdl~~~g~El~~G~~r~~d~~~~~~r  278 (342)
T d1e1oa2         203 KSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAER  278 (342)
T ss_dssp             TTCCHHHHHHHHHHHHTGGGCCSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTEEEEEEEEBCCCHHHHHHH
T ss_pred             cccchhHHHHHHHHHhhHhhccCCCcCCCCccccChhhccccccchhhhhhhcccCCEeecCCccccCCHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999  6655
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure