Psyllid ID: psy9396

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------115

MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIEYS

cccccccccccccHHHHHccccHHHHHHHHHHccccEEEEccccccEEHHHHHHHHHHccccEEEEEEEEEEccccccccccEEEEEcccHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHcccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEccHHccHHHHHHHHHccccccHHHHHHcccccccccccccHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccEEcccccccEEcccccHHHHccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHcccccEEEEcccHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHcccccccccccccccccccccccEEEEHHHHHHHHHHHcccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEcccccccccccEEEEEEccccccEEEEEccccccccHHHHHHHHHHHcccccccHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHEEEEccccHHHHHHHHHHHcccccccccccccEEEEEEEEEEEEEEcccccEEEEEEEEcccEEEEEEcHHHHHHHHcccccccEEEEEEEEEEccccccEEEEEcccccHHHHHHHcccEEEEEEcccccHHHHHHHHHHccccccccEEEEEEEcccEEEEEEccccccccccHHHHHHHHHcccccEEEEcc

ccccEEEEEEEccEEEccccEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccEEEEEEcccHHHHHHHHHHHHHHHccccccccEEcHHHHHHHcccccEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEccEEEccHHHccccEEEEEEccccccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHHHHHHHHHccccccccccccHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccHccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccccccHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHccccccccccccEEEEccccccccccEEEccccccEEEEccccHHHHHccEEHcHHHHHHHHHHHHHHHHHHHHccccccccHHccccccHHHHHHHHHcccEEEEEEccHHHHHHHHHHccccHHHHHHHHHHcccccccHcHHHHHHccccEccccccccHHHcccccEEEEEHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHcccEEcccccccccEEEEEcccccccccEEEEEEEEEccccHHHHHHHHHHHHccccHcHHHHHHHccHHHHHHHHHHHHHHcccHHcccHcHHHHHHHHHHHHHHHHHHHHHcccccHcccccccccccHHHccccccccHHHHHHHHHHHHcHEEccccHHHHHHHHHHHccccHHHccccccEEEEEEEEEEEEEEcccccEEEEEEcccccEEEEEEcHHHHHHHHHHHccccEEEEEEEEEcccccccEEEEEHHHccHHHHHHHHHHHEEEEEcccccHHHHHHHHHHHcccccccEEEEEEEccccEEEEEEccccEEcccHHHHHHHHHHccccEEEEEc

MIPQFIHLRLHSEYSIIDGLLRINDVIEAAAndyqpalaiTDLSNLFGIIKFYKSAynkgikpiigcdvwitneienkkpSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRwskifpdnfYIEIQRfkqpnmnfQIQQFINIasninlpivathpiqflkKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNlklefgkpklpkfptpkninindflISKSKHGLKKRLLnlykdpeiykceKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWaknnsipvgpgrgsgASSLVAYSlsitdidplsyNLLFErflnpnrismpdfdidfcpegrDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDsisklipfkpgklitlsnaikeepqlAERIKNEEEVRQLIELAKQVEGIIRNVGmhaggvliapsklinfcplykqegmtgiisqydkddieeiglikfdflglttlsilDKTIYFIKKINtkttnfslnklplndkdtyNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISlyrpgpmdliknfcrrkhgeyfnypdprtkdvlsETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKfagygfnksHATAYALLSYYTAYLKTHYSSFFMAANlslsmddtnKIKILVKDAIKTcglsilppninlskyyffpiiesdgkhkkiryglgaikgtgKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLInsgafdcfneKRYMLVASIDVALKNAEKTKKFINQLSlfknddnnnlkEYLNYvkvpswskkqELIEEKKVLGFCLSEHIFCIYETEIRQFIPIylselkptysctvsGIITelklkttyrGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFkcknglpfVLYYCINKSIKYemkfplnykvqpidDLKLALINLGLYNAIIEYS

MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIaegeilsntkrikKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEfgkpklpkfptpkniniNDFLISKSKHGLKKRLlnlykdpeiykceklrYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSisklipfkpgklitlsnAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKIntkttnfslnklplnDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGeyfnypdprtkDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLgaikgtgksTIEAIVTerkfgfftnlfdftkridkkyiNRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQlslfknddnnnLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIItelklkttyRGKILIividdnsnsVEVIINNQlyeknknilkENELLIVSGKVLEDRFLKNIrinaekifdinVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIEYS

MIPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHatayallsyytaylktHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYinrriinslinsGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIEYS

***QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKN****************VAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK*************EVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIE**

*IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVAL*******************DNN*****L*YVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIEYS

*IPQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVASIDVALKNAEKTKK*****S*FKND*NNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFSVMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALINLGLYNAIIEYS

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1149	2.2.26 [Sep-21-2011]
Q9JXZ2		1144	DNA polymerase III subuni	yes	N/A	0.968	0.972	0.473	0.0
Q9JVX8		1144	DNA polymerase III subuni	yes	N/A	0.968	0.972	0.473	0.0
Q9HXZ1		1173	DNA polymerase III subuni	yes	N/A	0.986	0.965	0.429	0.0
P14567		1160	DNA polymerase III subuni	yes	N/A	0.973	0.963	0.436	0.0
Q9XDH6		1173	DNA polymerase III subuni	yes	N/A	0.983	0.963	0.424	0.0
Q8X8X5		1160	DNA polymerase III subuni	N/A	N/A	0.973	0.963	0.432	0.0
P10443		1160	DNA polymerase III subuni	N/A	N/A	0.973	0.963	0.432	0.0
Q8FL05		1160	DNA polymerase III subuni	yes	N/A	0.973	0.963	0.432	0.0
Q9CPK3		1159	DNA polymerase III subuni	yes	N/A	0.965	0.956	0.425	0.0
P52022		1159	DNA polymerase III subuni	yes	N/A	0.930	0.922	0.442	0.0

>sp\|Q9JXZ2\|DPO3A_NEIMB DNA polymerase III subunit alpha OS=Neisseria meningitidis serogroup B (strain MC58) GN=dnaE PE=1 SV=1	Back alignment and function desciption

 Score = 1062 bits (2747), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 536/1133 (47%), Positives = 736/1133 (64%), Gaps = 20/1133 (1%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            P +I LRLH+E+SI DG++RI  +I  A     PAL I+DL N FG++KFYK+  + GIK
Sbjct: 4    PTYIPLRLHTEFSITDGMVRIKKLIAKAQEYGLPALGISDLMNEFGLVKFYKACRSAGIK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYI-ENINYGRAEIRIEWLE 121
            PI   DV I N     KP R +L+++N+ GYL+L ELL+ AY+ ++ N   AE+  EWLE
Sbjct: 64   PIGAADVRIGNPDAPDKPFRAMLIIRNDAGYLRLSELLTAAYVGKDRNVHHAELNPEWLE 123

Query: 122  KNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRF-KQPNMN 180
             N    GLI LSGAH G++G+ + NG  D A   A +++  FPD FY+E+QR  ++P   
Sbjct: 124  -NGDNSGLICLSGAHYGEVGVNLLNGNEDAARTAALKYAAWFPDAFYMELQRLPERPEWE 182

Query: 181  FQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQN 240
              +   + +A  + LP+VATHP QF+ + +F AHE R CIA G +L++ KR + FT  Q 
Sbjct: 183  ACVSGSVKLAEELGLPVVATHPTQFMSRDDFNAHEARVCIAGGWVLTDKKRPRDFTPGQF 242

Query: 241  FKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKH 300
            F     M + F D+P A++NT+EIAKRCNL +  GK  LP FPTP  ++++D+LI  S  
Sbjct: 243  FIPPETMAERFADLPEALENTVEIAKRCNLHITLGKNFLPLFPTPDGLSLDDYLIKLSNE 302

Query: 301  GLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPV 360
            GL++R++ LY D      +   Y++RL FE+  II+M F GYFLIV DFI WAK +  PV
Sbjct: 303  GLQERMVQLYPDEAERAAKMPEYQERLDFELNIIIQMKFPGYFLIVQDFINWAKTHGCPV 362

Query: 361  GPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQYV 420
            GPGRGSGA SLVAYSL ITD+DPL Y LLFERFLNP R+SMPDFD+DFC   R RVI+YV
Sbjct: 363  GPGRGSGAGSLVAYSLKITDLDPLKYALLFERFLNPERVSMPDFDVDFCQSNRGRVIEYV 422

Query: 421  KDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIK 480
            +++YG +AVSQIVTFGTM++K  IRDVGRVL+L +  CD +SKLIP +  K ++L  A++
Sbjct: 423  REKYGAEAVSQIVTFGTMSSKAVIRDVGRVLELPFMLCDKLSKLIPLEANKPLSLEKAME 482

Query: 481  EEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTG 540
             EPQ+ E I+  EE  +LI LAK++E + R +GMHAGGVLIAP K+ ++ P+Y+ +    
Sbjct: 483  TEPQIQELIE-AEEADELITLAKKLEDLTRGLGMHAGGVLIAPGKISDYSPVYQADESAS 541

Query: 541  IISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYN 600
             +S YDK D+E++GL+KFDFLGL  L+I++     IK  NT      + K+PL+D+  Y 
Sbjct: 542  PVSMYDKGDVEDVGLVKFDFLGLRNLTIIEMAQNNIK--NTTGDIIDVGKIPLDDQVAYQ 599

Query: 601  LLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEYF 660
            + + ANT AVFQ ES GMK MLK A    FEE+IA +SLYRPGPMD I +F  R  G+ F
Sbjct: 600  IFRDANTTAVFQFESTGMKKMLKTAHTTKFEELIAFVSLYRPGPMDNIPDFVARMKGQEF 659

Query: 661  NYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKF 720
             Y  P  + +L+ TYGIMVYQEQVMQ AQI+GGYSLG ADLLRRA+GKKK  EM++HR+ 
Sbjct: 660  QYIHPLLEGILAPTYGIMVYQEQVMQAAQIIGGYSLGGADLLRRAMGKKKPEEMVKHREI 719

Query: 721  FQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAAN 780
            F  GA K G+S+ K++EIFN +EKFAGYGFNKSHA AYAL+SY TA+LK HY + FMAA 
Sbjct: 720  FAEGAAKQGISREKSDEIFNYMEKFAGYGFNKSHAAAYALISYQTAWLKAHYPAEFMAAT 779

Query: 781  LSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKG 840
            +S  +D+T+++K    D  +  G+  LPP+IN S Y F P  +      KIRY LGAIKG
Sbjct: 780  MSSELDNTDQLKHFYDDC-RANGIEFLPPDINESDYRFTPYPD-----MKIRYALGAIKG 833

Query: 841  TGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLVA 899
            TG++ +E+I   R+ G  FT L DF +R+ K+++NRR + +LI  GAFD     R ML+A
Sbjct: 834  TGEAAVESITAARQSGGKFTGLLDFCERVGKEHMNRRTLEALIRGGAFDSIEPNRAMLLA 893

Query: 900  SIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLS 959
            +ID+A+ NA++     NQ  LF  D   +  E +  +  P WS+ ++L EEK V+GF LS
Sbjct: 894  NIDLAMDNADQKAANANQGGLF--DMMEDAIEPVRLIDAPMWSESEKLAEEKTVIGFYLS 951

Query: 960  EHIFCIYETEIRQFIPIYLSELKPTYSCTVSGIITELKLKTTYRGKILIIVIDDNSNSVE 1019
             H F  Y  E+RQ  P  L  LKP  S  ++G +T ++     RGKI  + ++D S  VE
Sbjct: 952  GHPFGPYAQEVRQIAPTKLDRLKPQDSVRLAGFVTAVRTMMGKRGKIAFVSLEDLSGQVE 1011

Query: 1020 VIINNQLYEKNKNILKENELLIVSGKVLEDRF--LKNIRINAEKIFDINVARILYGKKFS 1077
            +++  Q  E   + LK +++LI+  KV  D +     +RI A ++  +  AR  Y +  S
Sbjct: 1012 IMVGGQTLENCADCLKADQVLIIESKVSRDDYGGGDGLRILANQVMTLQTARERYARSLS 1071

Query: 1078 VMFNRTFNISILKKILLRFKCKNG--LPFVLYYCINKSIKYEMKFPLNYKVQP 1128
            +      +I  L ++L   +  +   +P  L Y  N+     ++ P  + V P
Sbjct: 1072 LALAPHHDIGGLVRLLAAHQLPDTPRIPLQLSYA-NEKASGRLQVPPKWTVTP 1123

DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. The alpha chain is the DNA polymerase.
Neisseria meningitidis serogroup B (strain MC58) (taxid: 122586)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp\|Q9JVX8\|DPO3A_NEIMA DNA polymerase III subunit alpha OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=dnaE PE=3 SV=1	Back alignment and function description

>sp\|Q9HXZ1\|DPO3A_PSEAE DNA polymerase III subunit alpha OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=dnaE PE=3 SV=1	Back alignment and function description

>sp\|P14567\|DPO3A_SALTY DNA polymerase III subunit alpha OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaE PE=3 SV=2	Back alignment and function description

>sp\|Q9XDH6\|DPO3A_PSEFL DNA polymerase III subunit alpha OS=Pseudomonas fluorescens GN=dnaE PE=3 SV=1	Back alignment and function description

>sp\|Q8X8X5\|DPO3A_ECO57 DNA polymerase III subunit alpha OS=Escherichia coli O157:H7 GN=dnaE PE=3 SV=1	Back alignment and function description

>sp\|P10443\|DPO3A_ECOLI DNA polymerase III subunit alpha OS=Escherichia coli (strain K12) GN=dnaE PE=1 SV=1	Back alignment and function description

>sp\|Q8FL05\|DPO3A_ECOL6 DNA polymerase III subunit alpha OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaE PE=3 SV=1	Back alignment and function description

>sp\|Q9CPK3\|DPO3A_PASMU DNA polymerase III subunit alpha OS=Pasteurella multocida (strain Pm70) GN=dnaE PE=3 SV=1	Back alignment and function description

>sp\|P52022\|DPO3A_VIBCH DNA polymerase III subunit alpha OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=dnaE PE=3 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1149
399017825		1153	DNA-directed DNA polymerase III PolC [He	0.995	0.992	0.620	0.0
398835783		1152	DNA-directed DNA polymerase III PolC [He	0.995	0.993	0.608	0.0
329908024		1177	DNA polymerase III alpha subunit [Oxalob	0.985	0.961	0.624	0.0
152980633		1152	DNA polymerase III subunit alpha [Janthi	0.987	0.985	0.620	0.0
340786231		1213	DNA polymerase III subunit alpha [Collim	0.995	0.943	0.608	0.0
300312866		1152	DNA polymerase III subunit alpha [Herbas	0.995	0.993	0.596	0.0
134093726		1153	DNA polymerase III subunit alpha [Hermin	0.987	0.984	0.613	0.0
415911120		1142	DNA polymerase III, alpha subunit [Herba	0.989	0.995	0.601	0.0
409407321		1142	DNA polymerase III subunit alpha [Herbas	0.989	0.995	0.598	0.0
395763786		1179	DNA polymerase III subunit alpha [Janthi	0.995	0.970	0.596	0.0

>gi\|399017825\|ref\|ZP_10720014.1\| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. CF444] gi\|398102592\|gb\|EJL92772.1\| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

 Score = 1537 bits (3979), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 715/1152 (62%), Positives = 913/1152 (79%), Gaps = 8/1152 (0%)

Query: 3    PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
            PQF+HLRLHSEYSI+DGL+RI+DV++AAA D Q ALAITDL+NLFG++KFYK A  KG+K
Sbjct: 4    PQFVHLRLHSEYSIVDGLVRIDDVVKAAAKDGQAALAITDLANLFGMVKFYKGARGKGVK 63

Query: 63   PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEK 122
            PI GCDVW++N+ +  KPSRLLLLVKN++GYLQLC+LLSKA++ N++ GRAEIR EWLE+
Sbjct: 64   PIAGCDVWVSNDDDRDKPSRLLLLVKNHHGYLQLCDLLSKAWLTNLHRGRAEIRPEWLEQ 123

Query: 123  NKYQDG---LIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
             ++++G   LIALSGAH GDIGIA++NG    AE  A+RWS  FP  FY+EIQR  QPNM
Sbjct: 124  LRHEEGGNGLIALSGAHFGDIGIAIENGNVAAAERCAQRWSDYFPGAFYVEIQRANQPNM 183

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
            + Q++Q + +A+ + LP+VATHPIQFL + EF+AHE RTCIAEGEIL+N +R+++F ++Q
Sbjct: 184  DIQVRQSVALAARLGLPVVATHPIQFLSQDEFIAHEARTCIAEGEILANARRVRRFNEQQ 243

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
             FK+Q+EM  LF D+P A+QNTIEIAKRCNL L  GKP+LP FPTP  + I+DFL++++K
Sbjct: 244  EFKSQAEMAALFADLPGAVQNTIEIAKRCNLTLTLGKPQLPNFPTPDGMTIDDFLVAETK 303

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL+ RL +L+ D    + E+ RY+ RL+FE +TIIKM F GYFLIV+DFIQWAKNN +P
Sbjct: 304  LGLEARLKHLFPDEARREKERPRYEARLKFENDTIIKMKFPGYFLIVADFIQWAKNNGVP 363

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAYSLSITD+DPL YNLLFERFLNP R+SMPDFDIDFC EGRDRVIQY
Sbjct: 364  VGPGRGSGAGSLVAYSLSITDLDPLQYNLLFERFLNPERVSMPDFDIDFCQEGRDRVIQY 423

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            VKDRYGK+AVSQI TFGTMAAKGA+RDVGRVLDL Y+FCD ISKLIPFKPGKL+TL++AI
Sbjct: 424  VKDRYGKEAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLADAI 483

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +EEP L ER++NEEEV+QL+ LA+QVEGI RN+GMHAGGVLIAP KL +FCPLY Q G  
Sbjct: 484  EEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQGGDA 543

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
            G++SQYDKDD+E +GL+KFDFLGLTTL+ILD+ + +IK+++    +F L KLPL D+ +Y
Sbjct: 544  GVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIKQLDPNMADFDLAKLPLTDRASY 603

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMDLIKNFCRRKHGEY 659
            +LL KA TVAVFQLES+GM+ MLK+A+PD FE+IIAL++LYRPGPMDLI +FC+RKHGE 
Sbjct: 604  DLLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKHGEK 663

Query: 660  FNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRK 719
            F+YPDPRT+ +LSETYGIMVYQEQVMQ+AQ++GGYSLG ADLLRRA+GKKK  EM EHR 
Sbjct: 664  FDYPDPRTEGILSETYGIMVYQEQVMQMAQVVGGYSLGGADLLRRAMGKKKAEEMAEHRN 723

Query: 720  FFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAA 779
             F+ GA K GLS+ KA++IF+ +EKFAGYGFNKSHA AYALLSY+TAYLK H+ + FMAA
Sbjct: 724  IFRAGAAKDGLSQEKADDIFDLMEKFAGYGFNKSHAAAYALLSYHTAYLKAHHPAAFMAA 783

Query: 780  NLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIK 839
            NLSL+MDDT KIKILV+DA+  CGL +LPP+INLS Y F P+ E   K  +IRYGLGA+K
Sbjct: 784  NLSLAMDDTEKIKILVEDALDVCGLGLLPPDINLSDYRFTPVGEPGKKAMQIRYGLGAVK 843

Query: 840  GTGKSTIEAIVTERK-FGFFTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRYMLV 898
            G+G+S IEAI+  R+  G F +LFDF KR+DKK INRR ++SLI +GAFDCF   R +L 
Sbjct: 844  GSGQSAIEAIIAARQEGGAFKDLFDFAKRVDKKQINRRTVDSLIRAGAFDCFGVDRAILQ 903

Query: 899  ASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCL 958
            AS+ +A +NAE+ +   NQ+SLF  DD ++L+  L YV V  W+ KQ L EEK  LGF L
Sbjct: 904  ASVGLAWENAEQLEASANQVSLFGGDD-SDLETPLEYVDVRPWTDKQRLTEEKTALGFYL 962

Query: 959  SEHIFCIYETEIRQFIPIYLSELKPTYSC-TVSGIITELKLKTTYRGKILIIVIDDNSNS 1017
            S H+F  YE E+RQF+   +S L+P+    +++GIIT ++++ T RGK+LI+ +DD S +
Sbjct: 963  SGHLFDAYEKEVRQFVRAKISSLEPSRDPRSLAGIITGIRVQMTQRGKLLIVSLDDGSGT 1022

Query: 1018 VEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINAEKIFDINVARILYGKKFS 1077
            V+V +  +L E NK   KE+ELLIV GKV EDRF   +RI+AEK+ DI  ARI YG++  
Sbjct: 1023 VDVTVYGELAEPNKAFFKEDELLIVQGKVSEDRFNGGLRISAEKVMDIGAARIQYGQRVV 1082

Query: 1078 VMFNRTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNYKVQPIDDLKLALI 1137
            V  ++  + + L+  L  ++   GLPFV+ Y +   +  E+    +++V P D L+ +L 
Sbjct: 1083 VSLDKAVDPAYLRDTLSSYRQAQGLPFVMKY-VQSGVGCEVMLGDSWRVVPSDGLQSSLK 1141

Query: 1138 -NLGLYNAIIEY 1148
             + G    ++EY
Sbjct: 1142 ESFGQEAVVVEY 1153

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|398835783\|ref\|ZP_10593140.1\| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. YR522] gi\|398215221\|gb\|EJN01786.1\| DNA-directed DNA polymerase III PolC [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|329908024\|ref\|ZP_08274797.1\| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi\|327546808\|gb\|EGF31739.1\| DNA polymerase III alpha subunit [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|152980633\|ref\|YP_001352224.1\| DNA polymerase III subunit alpha [Janthinobacterium sp. Marseille] gi\|151280710\|gb\|ABR89120.1\| DNA polymerase III alpha subunit [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|340786231\|ref\|YP_004751696.1\| DNA polymerase III subunit alpha [Collimonas fungivorans Ter331] gi\|340551498\|gb\|AEK60873.1\| DNA polymerase III alpha subunit [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

>gi\|300312866\|ref\|YP_003776958.1\| DNA polymerase III subunit alpha [Herbaspirillum seropedicae SmR1] gi\|300075651\|gb\|ADJ65050.1\| DNA polymerase III (alpha chain) protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

>gi\|134093726\|ref\|YP_001098801.1\| DNA polymerase III subunit alpha [Herminiimonas arsenicoxydans] gi\|133737629\|emb\|CAL60672.1\| DNA polymerase III, alpha subunit [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

>gi\|415911120\|ref\|ZP_11553363.1\| DNA polymerase III, alpha subunit [Herbaspirillum frisingense GSF30] gi\|407762316\|gb\|EKF71189.1\| DNA polymerase III, alpha subunit [Herbaspirillum frisingense GSF30]	Back alignment and taxonomy information

>gi\|409407321\|ref\|ZP_11255772.1\| DNA polymerase III subunit alpha [Herbaspirillum sp. GW103] gi\|386433072\|gb\|EIJ45898.1\| DNA polymerase III subunit alpha [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|395763786\|ref\|ZP_10444455.1\| DNA polymerase III subunit alpha [Janthinobacterium lividum PAMC 25724]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1149
UNIPROTKB\|P10443		1160	dnaE [Escherichia coli K-12 (t	0.968	0.959	0.422	2.7e-235
UNIPROTKB\|Q48F74		1173	dnaE "DNA polymerase III, alph	0.764	0.748	0.465	1.2e-234
TIGR_CMR\|SO_1644		1158	SO_1644 "DNA polymerase III, a	0.976	0.968	0.411	9.6e-231
UNIPROTKB\|P52022		1159	dnaE "DNA polymerase III subun	0.925	0.917	0.428	2.6e-230
TIGR_CMR\|VC_2245		1159	VC_2245 "DNA polymerase III, a	0.925	0.917	0.428	2.6e-230
TIGR_CMR\|CBU_1337		1143	CBU_1337 "DNA polymerase III,	0.912	0.916	0.429	9.9e-229
TIGR_CMR\|CPS_1570		1186	CPS_1570 "DNA polymerase III,	0.764	0.740	0.469	1.5e-211
TIGR_CMR\|GSU_1401		1155	GSU_1401 "DNA polymerase III,	0.973	0.968	0.377	1.8e-199
TIGR_CMR\|CHY_1137		1116	CHY_1137 "DNA polymerase III,	0.880	0.906	0.401	6.2e-188
TIGR_CMR\|ECH_0922		1120	ECH_0922 "DNA polymerase III,	0.877	0.9	0.388	2.1e-187

UNIPROTKB\|P10443 dnaE [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

 Score = 2269 (803.8 bits), Expect = 2.7e-235, P = 2.7e-235
 Identities = 488/1156 (42%), Positives = 726/1156 (62%)

Query:     3 PQFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIK 62
             P+F+HLR+HS+YS+IDGL +   +++ AA    PALAITD +NL G++KFY + +  GIK
Sbjct:     4 PRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIK 63

Query:    63 PIIGCDVWITNEIENKKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAE--IRIEWL 120
             PI+G D  +  ++   + + L +L  NN GY  L  L+SKAY     YG A   I  +WL
Sbjct:    64 PIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRG--YGAAGPIIDRDWL 121

Query:   121 -EKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
              E N   +GLI LSG  +GD+G ++  G + + +     + + FPD +++E+ R  +P+ 
Sbjct:   122 IELN---EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178

Query:   180 NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
                +   + +A    LP+VAT+ ++F+  ++F AHE+R  I +G  L + KR + ++ +Q
Sbjct:   179 ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238

Query:   240 NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
               +++ EM +LF DIP A+ NT+EIAKRCN+ +  G+  LP+FPT  +++  D+L+ ++K
Sbjct:   239 YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTG-DMSTEDYLVKRAK 297

Query:   300 HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
              GL++RL  L+ D E     +  Y +RL+ E++ I +M F GYFLIV +FIQW+K+N +P
Sbjct:   298 EGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357

Query:   360 VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
             VGPGRGSGA SLVAY+L ITD+DPL ++LLFERFLNP R+SMPDFD+DFC E RD+VI++
Sbjct:   358 VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417

Query:   420 VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
             V D YG+DAVSQI+TFGTMAAK  IRDVGRVL   Y F D ISKLIP  PG  +TL+ A 
Sbjct:   418 VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPG--MTLAKAF 475

Query:   480 KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
             + EPQL E  + +EEV+ LI++A+++EG+ RN G HAGGV+IAP+K+ +F PLY  E   
Sbjct:   476 EAEPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGK 535

Query:   540 GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLN--KLPLNDKD 597
               ++Q+DK D+E  GL+KFDFLGL TL+I++  +  I K   K     L+   +PL+DK 
Sbjct:   536 HPVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKK 595

Query:   598 TYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRK 655
             ++++L+++ T AVFQLES+GMK+++K  +PD FE++IAL++L+RPGP+   ++ NF  RK
Sbjct:   596 SFDMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRK 655

Query:   656 HG-EYFNYPDPR-----TKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKK 709
             HG E  +YPD +      K VL  TYGI++YQEQVMQIAQ+L GY+LG AD+LRRA+GKK
Sbjct:   656 HGREEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKK 715

Query:   710 KTSEMIEHRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHXXXXXXXXXXXXXXX 769
             K  EM + R  F  GA K G++   A +IF+ +EKFAGYGFNKSH               
Sbjct:   716 KPEEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLK 775

Query:   770 XHYSSFFMAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHK 829
              HY + FMAA ++  MD+T K+  LV +  +  GL ILPP+IN   Y+F   +  DG+  
Sbjct:   776 AHYPAEFMAAVMTADMDNTEKVVGLVDECWRM-GLKILPPDINSGLYHFH--VNDDGE-- 830

Query:   830 KIRYGLGAIKGTGKSTIEAIVTER-KFGFFTNLFDFTKRIDKKYXXXXXXXXXXXXGAFD 888
              I YG+GAIKG G+  IEAI+  R K G+F  LFD   R D K             GAFD
Sbjct:   831 -IVYGIGAIKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFD 889

Query:   889 CFNEKRYMLVASIDVALKNAEKTKKF--INQLSLFK--NDDNNNLKEYLNYVKVPSWSKK 944
                  R  L+ S+  ALK A++  K   I Q  +F    ++   +++  +Y     W ++
Sbjct:   890 RLGPHRAALMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQ--SYASCQPWPEQ 947

Query:   945 QELIEEKKVLGFCLSEHIFCIYETEIRQFIP-IYLSELKPTYS---CTVSGIITELKLKT 1000
               L  E++ LG  L+ H    Y  EI +++  + L ++ PT      T +G++   ++  
Sbjct:   948 VVLDGERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMV 1007

Query:  1001 TYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKVLEDRFLKNIRINA 1059
             T RG +I I  +DD S  +EV++     +K + +L+++ +LIVSG+V  D F   +++ A
Sbjct:  1008 TKRGNRIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTA 1067

Query:  1060 EKIFDINVARILYGKKFSV-MFNRTFNISILKKILLRFKC-KNG-LPFVLYYCINKSIKY 1116
              ++ DI+ AR  Y +  ++ + +R  +  +L ++    +  ++G +P  LYY      + 
Sbjct:  1068 REVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQ-RADARA 1126

Query:  1117 EMKFPLNYKVQPIDDL 1132
              ++F   ++V P D L
Sbjct:  1127 RLRFGATWRVSPSDRL 1142

GO:0008408 "3'-5' exonuclease activity" evidence=IDA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003677 "DNA binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006260 "DNA replication" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB\|Q48F74 dnaE "DNA polymerase III, alpha subunit" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1644 SO_1644 "DNA polymerase III, alpha subunit" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P52022 dnaE "DNA polymerase III subunit alpha" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2245 VC_2245 "DNA polymerase III, alpha subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CBU_1337 CBU_1337 "DNA polymerase III, alpha subunit" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_1570 CPS_1570 "DNA polymerase III, alpha subunit" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_1401 GSU_1401 "DNA polymerase III, alpha subunit" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_1137 CHY_1137 "DNA polymerase III, alpha subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|ECH_0922 ECH_0922 "DNA polymerase III, alpha subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52022	DPO3A_VIBCH	2, ., 7, ., 7, ., 7	0.4425	0.9303	0.9223	yes	N/A
Q9Z7N8	DPO3A_CHLPN	2, ., 7, ., 7, ., 7	0.3642	0.9068	0.8403	yes	N/A
Q9PGU4	DPO3A_XYLFA	2, ., 7, ., 7, ., 7	0.4175	0.9469	0.9119	yes	N/A
Q1RKF9	DPO3A_RICBR	2, ., 7, ., 7, ., 7	0.375	0.9147	0.8967	yes	N/A
Q89AN8	DPO3A_BUCBP	2, ., 7, ., 7, ., 7	0.4233	0.9068	0.9675	yes	N/A
O51526	DPO3A_BORBU	2, ., 7, ., 7, ., 7	0.3808	0.9495	0.9511	yes	N/A
O05974	DPO3A_RICPR	2, ., 7, ., 7, ., 7	0.3764	0.9216	0.8959	yes	N/A
Q9X7F0	DPO3A_MYCLE	2, ., 7, ., 7, ., 7	0.3283	0.8677	0.8470	yes	N/A
P34699	DPO3A_SACEN	2, ., 7, ., 7, ., 7	0.3192	0.9033	0.8693	yes	N/A
Q9ZJF9	DPO3A_HELPJ	2, ., 7, ., 7, ., 7	0.3716	0.9051	0.8587	yes	N/A
P63980	DPO3A_STAAN	2, ., 7, ., 7, ., 7	0.3358	0.8215	0.8863	yes	N/A
Q92GB2	DPO3A_RICCN	2, ., 7, ., 7, ., 7	0.3700	0.9225	0.8975	yes	N/A
Q9JXZ2	DPO3A_NEIMB	2, ., 7, ., 7, ., 7	0.4730	0.9686	0.9729	yes	N/A
Q9A700	DPO3A_CAUCR	2, ., 7, ., 7, ., 7	0.3721	0.9530	0.9580	yes	N/A
Q8FL05	DPO3A_ECOL6	2, ., 7, ., 7, ., 7	0.4326	0.9730	0.9637	yes	N/A
O84549	DPO3A_CHLTR	2, ., 7, ., 7, ., 7	0.3507	0.9060	0.8415	yes	N/A
Q9XDH6	DPO3A_PSEFL	2, ., 7, ., 7, ., 7	0.4243	0.9834	0.9633	yes	N/A
O83675	DPO3A_TREPA	2, ., 7, ., 7, ., 7	0.3820	0.9094	0.8931	yes	N/A
Q68VX1	DPO3A_RICTY	2, ., 7, ., 7, ., 7	0.3766	0.9129	0.8889	yes	N/A
Q5HF71	DPO3A_STAAC	2, ., 7, ., 7, ., 7	0.3352	0.8224	0.8873	yes	N/A
P56157	DPO3A_HELPY	2, ., 7, ., 7, ., 7	0.3728	0.9060	0.8596	yes	N/A
O67125	DPO3A_AQUAE	2, ., 7, ., 7, ., 7	0.3707	0.8851	0.8759	yes	N/A
Q9HXZ1	DPO3A_PSEAE	2, ., 7, ., 7, ., 7	0.4296	0.9860	0.9658	yes	N/A
Q4UK40	DPO3A_RICFE	2, ., 7, ., 7, ., 7	0.3686	0.8903	0.8475	yes	N/A
Q9PPI9	DPO3A_CAMJE	2, ., 7, ., 7, ., 7	0.4041	0.8198	0.785	yes	N/A
P43743	DPO3A_HAEIN	2, ., 7, ., 7, ., 7	0.4209	0.9782	0.9698	yes	N/A
Q9JVX8	DPO3A_NEIMA	2, ., 7, ., 7, ., 7	0.4730	0.9686	0.9729	yes	N/A
Q9PJJ7	DPO3A_CHLMU	2, ., 7, ., 7, ., 7	0.3535	0.8999	0.8358	yes	N/A
Q87EY0	DPO3A_XYLFT	2, ., 7, ., 7, ., 7	0.4180	0.9460	0.9111	yes	N/A
Q9Z618	DPO3A_STRCO	2, ., 7, ., 7, ., 7	0.3288	0.8772	0.8549	yes	N/A
P63979	DPO3A_STAAM	2, ., 7, ., 7, ., 7	0.3358	0.8215	0.8863	yes	N/A
P63978	DPO3A_MYCBO	2, ., 7, ., 7, ., 7	0.3202	0.9312	0.9037	yes	N/A
Q9F1K0	DPO3A_STAA8	2, ., 7, ., 7, ., 7	0.3339	0.8241	0.8892	yes	N/A
Q8CNX0	DPO3A_STAES	2, ., 7, ., 7, ., 7	0.3364	0.8259	0.8910	yes	N/A
P63977	DPO3A_MYCTU	2, ., 7, ., 7, ., 7	0.3202	0.9312	0.9037	yes	N/A
Q8NW58	DPO3A_STAAW	2, ., 7, ., 7, ., 7	0.3352	0.8224	0.8873	yes	N/A
P14567	DPO3A_SALTY	2, ., 7, ., 7, ., 7	0.4361	0.9730	0.9637	yes	N/A
Q8K9S3	DPO3A_BUCAP	2, ., 7, ., 7, ., 7	0.4440	0.9530	0.9431	yes	N/A
B8GWS6	DPO3A_CAUCN	2, ., 7, ., 7, ., 7	0.3721	0.9530	0.9580	yes	N/A
O34623	DPO3A_BACSU	2, ., 7, ., 7, ., 7	0.3538	0.9486	0.9775	yes	N/A
P57332	DPO3A_BUCAI	2, ., 7, ., 7, ., 7	0.4458	0.9521	0.9422	yes	N/A
Q9K838	DPO3A_BACHD	2, ., 7, ., 7, ., 7	0.3610	0.8703	0.8960	yes	N/A
Q9CPK3	DPO3A_PASMU	2, ., 7, ., 7, ., 7	0.4257	0.9651	0.9568	yes	N/A
Q6G8M4	DPO3A_STAAS	2, ., 7, ., 7, ., 7	0.3352	0.8224	0.8873	yes	N/A
Q5HNK2	DPO3A_STAEQ	2, ., 7, ., 7, ., 7	0.3364	0.8259	0.8910	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	0.921
4th Layer	2.7.7.7	0.914

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		1149
PRK05673		1135	PRK05673, dnaE, DNA polymerase III subunit alpha;	0.0
COG0587		1139	COG0587, DnaE, DNA polymerase III, alpha subunit [	0.0
PRK06826		1151	PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	0.0
TIGR00594		1022	TIGR00594, polc, DNA-directed DNA polymerase III (	0.0
PRK07374		1170	PRK07374, dnaE, DNA polymerase III subunit alpha;	0.0
PRK06920		1107	PRK06920, dnaE, DNA polymerase III DnaE; Reviewed	0.0
PRK09532		874	PRK09532, PRK09532, DNA polymerase III subunit alp	0.0
pfam07733		384	pfam07733, DNA_pol3_alpha, Bacterial DNA polymeras	0.0
PRK07135		973	PRK07135, dnaE, DNA polymerase III DnaE; Validated	1e-175
PRK07279		1034	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	1e-170
PRK05898		971	PRK05898, dnaE, DNA polymerase III DnaE; Validated	1e-168
PRK05672		1046	PRK05672, dnaE2, error-prone DNA polymerase; Valid	1e-155
cd07433		277	cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidi	1e-136
cd12113		283	cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidi	1e-74
PRK07373		449	PRK07373, PRK07373, DNA polymerase III subunit alp	3e-47
TIGR01405		1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	4e-33
cd07431		179	cd07431, PHP_PolIIIA, Polymerase and Histidinol Ph	6e-31
COG2176		1444	COG2176, PolC, DNA polymerase III, alpha subunit (	2e-30
cd07434		260	cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidi	5e-22
pfam02811		174	pfam02811, PHP, PHP domain	2e-21
cd07435		268	cd07435, PHP_PolIIIA_POLC, Polymerase and Histidin	5e-20
smart00481		67	smart00481, POLIIIAc, DNA polymerase alpha chain l	4e-18
cd04485		84	cd04485, DnaE_OBF, DnaE_OBF: A subfamily of OB fol	6e-13
PRK00448		1437	PRK00448, polC, DNA polymerase III PolC; Validated	2e-12
cd07309		88	cd07309, PHP, Polymerase and Histidinol Phosphatas	7e-09
pfam01336		75	pfam01336, tRNA_anti, OB-fold nucleic acid binding	7e-07
PRK00448		1437	PRK00448, polC, DNA polymerase III PolC; Validated	9e-07
PRK00448		1437	PRK00448, polC, DNA polymerase III PolC; Validated	7e-06
COG2176		1444	COG2176, PolC, DNA polymerase III, alpha subunit (	1e-05
cd04488		75	cd04488, RecG_wedge_OBF, RecG_wedge_OBF: A subfami	1e-05
TIGR01405		1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	9e-05
PRK00448		1437	PRK00448, polC, DNA polymerase III PolC; Validated	1e-04
cd03524		75	cd03524, RPA2_OBF_family, RPA2_OBF_family: A famil	4e-04
cd04484		82	cd04484, polC_OBF, polC_OBF: A subfamily of OB fol	8e-04

>gnl\|CDD\|235554 PRK05673, dnaE, DNA polymerase III subunit alpha; Validated	Back alignment and domain information

 Score = 1441 bits (3734), Expect = 0.0
 Identities = 518/1152 (44%), Positives = 741/1152 (64%), Gaps = 44/1152 (3%)

Query: 5    FIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPI 64
            F+HL +HSEYS++DG  +I  +++ AA    PA+A+TD  NLFG ++FYK+A   GIKPI
Sbjct: 2    FVHLHVHSEYSLLDGAAKIKPLVKKAAELGMPAVALTDHGNLFGAVEFYKAAKGAGIKPI 61

Query: 65   IGCDVWITNEIEN-----KKPSRLLLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEW 119
            IGC+ ++  E ++        + L LL KN  GY  L +L S+AY+E     +  I  EW
Sbjct: 62   IGCEAYVAPEKKDDVSGGGAYTHLTLLAKNETGYRNLFKLSSRAYLEGQYGYKPRIDREW 121

Query: 120  LEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIFPDNFYIEIQRFKQPNM 179
            L +  + +GLIALSG   G++G A+  G+ D AE  A  + +IF D FY+E+ R   P  
Sbjct: 122  LAE--HSEGLIALSGCPSGEVGTALLAGQYDEAEEAAAEYQEIFGDRFYLELMRHGLPIE 179

Query: 180  NFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQ 239
                   + +A  + LP+VAT+ + +L   +  AHE   CIAEG+ L +  R + ++ EQ
Sbjct: 180  RRVEHALLELAKELGLPLVATNDVHYLTPEDAEAHEALLCIAEGKTLDDPDRFRFYSPEQ 239

Query: 240  NFKTQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSK 299
              K+  EM +LF D+P A+ NT+EIA+RCN+++  GKP LP+FPTP      D+L  ++K
Sbjct: 240  YLKSAEEMRELFADLPEALDNTVEIAERCNVEVRLGKPFLPRFPTPDGETEEDYLRKEAK 299

Query: 300  HGLKKRLLNLYKDPEIYKCEKLRYKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIP 359
             GL++RL  L+ D E  +     Y +RL++E++ II+M F GYFLIV+DFIQWAK+N IP
Sbjct: 300  EGLEERLAFLFPDEERPE-----YVERLEYELDVIIQMGFPGYFLIVADFIQWAKDNGIP 354

Query: 360  VGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMPDFDIDFCPEGRDRVIQY 419
            VGPGRGSGA SLVAY+L ITD+DPL + LLFERFLNP R+SMPDFDIDFC + RD VI+Y
Sbjct: 355  VGPGRGSGAGSLVAYALGITDLDPLRFGLLFERFLNPERVSMPDFDIDFCQDRRDEVIRY 414

Query: 420  VKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAI 479
            V ++YG+DAV+QI+TFGTM AK  IRDVGRVL + Y F D I+KLIP  PG  ITL+ A 
Sbjct: 415  VAEKYGRDAVAQIITFGTMKAKAVIRDVGRVLGMPYGFVDRITKLIPPDPG--ITLAKAY 472

Query: 480  KEEPQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMT 539
            +EEP+L E  +++ EV++LI++A+++EG+ RN G+HA GV+I+P+ L +F PLY+     
Sbjct: 473  EEEPELRELYESDPEVKRLIDMARKLEGLTRNAGVHAAGVVISPTPLTDFVPLYRDPDSG 532

Query: 540  GIISQYDKDDIEEIGLIKFDFLGLTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTY 599
              ++Q+D  D+E  GL+KFDFLGL TL+I+D  +  IKK         L  +PL+D  TY
Sbjct: 533  MPVTQFDMKDVEAAGLVKFDFLGLRTLTIIDDALKLIKKRRGID--VDLEAIPLDDPKTY 590

Query: 600  NLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRPGPMD--LIKNFCRRKHG 657
             LL++  T+ VFQLES+GM+++LK  KPD FE+IIAL++LYRPGPM+  +I NF  RKHG
Sbjct: 591  ELLQRGETLGVFQLESRGMRDLLKRLKPDCFEDIIALVALYRPGPMESGMIPNFIDRKHG 650

Query: 658  -EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIE 716
             E   YP P  + +L ETYGI+VYQEQVMQIAQ+L GYSLG ADLLRRA+GKKK  EM +
Sbjct: 651  REEIEYPHPELEPILKETYGIIVYQEQVMQIAQVLAGYSLGGADLLRRAMGKKKPEEMAK 710

Query: 717  HRKFFQNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFF 776
             R+ F  GA K G+ +  A+ IF+ +EKFAGYGFNKSHA AYAL+SY TAYLK HY + F
Sbjct: 711  QREIFVEGAKKNGIDEEAADAIFDLLEKFAGYGFNKSHAAAYALVSYQTAYLKAHYPAEF 770

Query: 777  MAANLSLSMDDTNKIKILVKDAIKTCGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLG 836
            MAA L+  MD+T+K+ + + +  +  G+ +LPP++N S Y F            IRYGLG
Sbjct: 771  MAALLTSDMDNTDKVAVYLDEC-RRMGIKVLPPDVNESLYDF----TVVD--GDIRYGLG 823

Query: 837  AIKGTGKSTIEAIVTERKFGF-FTNLFDFTKRIDKKYINRRIINSLINSGAFDCFNEKRY 895
            AIKG G+  +EAIV  R+ G  F +LFDF  R+D K +N+R++ SLI +GAFD     R 
Sbjct: 824  AIKGVGEGAVEAIVEAREEGGPFKDLFDFCARVDLKKVNKRVLESLIKAGAFDSLGPNRA 883

Query: 896  MLVASIDVALKNAEKTKK--FINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKV 953
             L+AS++ A+  A++ KK     Q  LF           ++   V  W KK++L  E++ 
Sbjct: 884  ALLASLEDAVDAADQHKKAEASGQFDLFGGLGEEPEDVEVSVPDVEEWDKKEKLAGERET 943

Query: 954  LGFCLSEHIFCIYETEIRQFIPIYLSELKPTY---SCTVSGIITELKLKTTYRG-KILII 1009
            LG  LS H    YE E+R+     L++L+PT      TV+G++  ++ + T RG K+ I+
Sbjct: 944  LGLYLSGHPLDGYEDELRRLRDTRLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIV 1003

Query: 1010 VIDDNSNSVEVIINNQLYEKNKNILKENELLIVSGKV-LEDRFLKNIRINAEKIFDINVA 1068
             ++D S  +EV++ ++  EK +++L+E+ +++V G+V  +D     +R+ A ++ D+  A
Sbjct: 1004 TLEDLSGRIEVMLFSEALEKYRDLLEEDRIVVVKGQVSFDDGG---LRLTAREVMDLEEA 1060

Query: 1069 RILYGKKFSVMFN----RTFNISILKKILLRFKCKNGLPFVLYYCINKSIKYEMKFPLNY 1124
            R  Y +   +           +  LK++L   +  +  P  LY   +   + E++    +
Sbjct: 1061 RAKYARPLRISLPDRQLTPQLLERLKQVLEPHRGTS--PVHLYL-QDPDAEAELRLGDRW 1117

Query: 1125 KVQPIDDLKLAL 1136
            +V P D L   L
Sbjct: 1118 RVTPSDALLGDL 1129

Length = 1135

>gnl\|CDD\|223660 COG0587, DnaE, DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>gnl\|CDD\|233039 TIGR00594, polc, DNA-directed DNA polymerase III (polc)	Back alignment and domain information

>gnl\|CDD\|168927 PRK07374, dnaE, DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>gnl\|CDD\|180749 PRK06920, dnaE, DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>gnl\|CDD\|181933 PRK09532, PRK09532, DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>gnl\|CDD\|219543 pfam07733, DNA_pol3_alpha, Bacterial DNA polymerase III alpha subunit	Back alignment and domain information

>gnl\|CDD\|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated	Back alignment and domain information

>gnl\|CDD\|180917 PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>gnl\|CDD\|135648 PRK05898, dnaE, DNA polymerase III DnaE; Validated	Back alignment and domain information

>gnl\|CDD\|235553 PRK05672, dnaE2, error-prone DNA polymerase; Validated	Back alignment and domain information

>gnl\|CDD\|213988 cd07433, PHP_PolIIIA_DnaE1, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE1	Back alignment and domain information

>gnl\|CDD\|213997 cd12113, PHP_PolIIIA_DnaE3, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III DnaE3	Back alignment and domain information

>gnl\|CDD\|236003 PRK07373, PRK07373, DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>gnl\|CDD\|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>gnl\|CDD\|213986 cd07431, PHP_PolIIIA, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III	Back alignment and domain information

>gnl\|CDD\|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|213989 cd07434, PHP_PolIIIA_DnaE2, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at DnaE2 gene	Back alignment and domain information

>gnl\|CDD\|217238 pfam02811, PHP, PHP domain	Back alignment and domain information

>gnl\|CDD\|213990 cd07435, PHP_PolIIIA_POLC, Polymerase and Histidinol Phosphatase domain of alpha-subunit of bacterial polymerase III at PolC gene	Back alignment and domain information

>gnl\|CDD\|197753 smart00481, POLIIIAc, DNA polymerase alpha chain like domain	Back alignment and domain information

>gnl\|CDD\|239931 cd04485, DnaE_OBF, DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)	Back alignment and domain information

>gnl\|CDD\|234767 PRK00448, polC, DNA polymerase III PolC; Validated	Back alignment and domain information

>gnl\|CDD\|213985 cd07309, PHP, Polymerase and Histidinol Phosphatase domain	Back alignment and domain information

>gnl\|CDD\|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain	Back alignment and domain information

>gnl\|CDD\|234767 PRK00448, polC, DNA polymerase III PolC; Validated	Back alignment and domain information

>gnl\|CDD\|234767 PRK00448, polC, DNA polymerase III PolC; Validated	Back alignment and domain information

>gnl\|CDD\|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|239934 cd04488, RecG_wedge_OBF, RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG	Back alignment and domain information

>gnl\|CDD\|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>gnl\|CDD\|234767 PRK00448, polC, DNA polymerase III PolC; Validated	Back alignment and domain information

>gnl\|CDD\|239601 cd03524, RPA2_OBF_family, RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>gnl\|CDD\|239930 cd04484, polC_OBF, polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC)	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1149
PRK06920		1107	dnaE DNA polymerase III DnaE; Reviewed	100.0
PRK05673		1135	dnaE DNA polymerase III subunit alpha; Validated	100.0
PRK07374		1170	dnaE DNA polymerase III subunit alpha; Validated	100.0
PRK06826		1151	dnaE DNA polymerase III DnaE; Reviewed	100.0
COG0587		1139	DnaE DNA polymerase III, alpha subunit [DNA replic	100.0
PRK07279		1034	dnaE DNA polymerase III DnaE; Reviewed	100.0
TIGR00594		1022	polc DNA-directed DNA polymerase III (polc). This	100.0
PRK05672		1046	dnaE2 error-prone DNA polymerase; Validated	100.0
PRK07135		973	dnaE DNA polymerase III DnaE; Validated	100.0
PRK05898		971	dnaE DNA polymerase III DnaE; Validated	100.0
PRK09532		874	DNA polymerase III subunit alpha; Reviewed	100.0
TIGR01405		1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	100.0
PRK00448		1437	polC DNA polymerase III PolC; Validated	100.0
PF07733		426	DNA_pol3_alpha: Bacterial DNA polymerase III alpha	100.0
COG2176		1444	PolC DNA polymerase III, alpha subunit (gram-posit	100.0
PRK07373		449	DNA polymerase III subunit alpha; Reviewed	100.0
PF14579		90	HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI	99.88
PF02811		175	PHP: PHP domain; InterPro: IPR004013 The PHP (Poly	99.84
smart00481		67	POLIIIAc DNA polymerase alpha chain like domain. D	99.62
PRK06361		212	hypothetical protein; Provisional	99.31
PRK09248		246	putative hydrolase; Validated	99.23
cd04489		78	ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol	99.21
cd04490		79	PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds	99.15
COG0613		258	Predicted metal-dependent phosphoesterases (PHP fa	99.07
COG1387		237	HIS2 Histidinol phosphatase and related hydrolases	99.06
cd04485		84	DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp	99.05
PRK07328		269	histidinol-phosphatase; Provisional	99.04
PRK08392		215	hypothetical protein; Provisional	99.02
PRK00912		237	ribonuclease P protein component 3; Provisional	98.94
PRK07945		335	hypothetical protein; Provisional	98.9
TIGR00375		374	conserved hypothetical protein TIGR00375. The memb	98.89
TIGR01856		253	hisJ_fam histidinol phosphate phosphatase HisJ fam	98.75
PRK08609		570	hypothetical protein; Provisional	98.72
PRK08123		270	histidinol-phosphatase; Reviewed	98.7
PF01336		75	tRNA_anti-codon: OB-fold nucleic acid binding doma	98.65
cd04492		83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	98.61
cd03524		75	RPA2_OBF_family RPA2_OBF_family: A family of oligo	98.43
PRK05588		255	histidinol-phosphatase; Provisional	98.43
PRK07329		246	hypothetical protein; Provisional	98.33
PRK06740		331	histidinol-phosphatase; Validated	97.88
PF13742		99	tRNA_anti_2: OB-fold nucleic acid binding domain	97.41
PRK13480		314	3'-5' exoribonuclease YhaM; Provisional	97.41
COG1379		403	PHP family phosphoesterase with a Zn ribbon [Gener	97.15
cd04478		95	RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor	96.98
cd04322		108	LysRS_N LysRS_N: N-terminal, anticodon recognition	96.86
cd04483		92	hOBFC1_like hOBFC1_like: A subfamily of OB folds s	96.79
cd04487		73	RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f	96.72
PRK06461		129	single-stranded DNA-binding protein; Reviewed	96.69
cd04474		104	RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor	96.62
cd04321		86	ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a	96.43
COG1555		149	ComEA DNA uptake protein and related DNA-binding p	96.38
cd04484		82	polC_OBF polC_OBF: A subfamily of OB folds corresp	96.34
cd04488		75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	96.32
PF12836		65	HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE	96.29
COG5235		258	RFA2 Single-stranded DNA-binding replication prote	96.25
cd04319		103	PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod	95.86
cd04316		108	ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a	95.83
PRK00286		438	xseA exodeoxyribonuclease VII large subunit; Revie	95.62
cd04320		102	AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r	95.6
cd04482		91	RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara	95.59
COG1570		440	XseA Exonuclease VII, large subunit [DNA replicati	95.55
cd04100		85	Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant	95.54
cd04323		84	AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a	95.49
cd04491		82	SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil	95.46
TIGR00237		432	xseA exodeoxyribonuclease VII, large subunit. This	95.39
COG1491		202	Predicted RNA-binding protein [Translation, riboso	95.34
PRK08486		182	single-stranded DNA-binding protein; Provisional	95.29
PF04919		181	DUF655: Protein of unknown function (DUF655); Inte	95.25
PRK03932		450	asnC asparaginyl-tRNA synthetase; Validated	95.18
cd04318		82	EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod	95.04
PRK07275		162	single-stranded DNA-binding protein; Provisional	95.03
PRK06751		173	single-stranded DNA-binding protein; Provisional	94.95
PRK07459		121	single-stranded DNA-binding protein; Provisional	94.94
TIGR00499		496	lysS_bact lysyl-tRNA synthetase, eukaryotic and no	94.61
cd04317		135	EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod	94.53
TIGR00426		69	competence protein ComEA helix-hairpin-helix repea	94.53
PRK00484		491	lysS lysyl-tRNA synthetase; Reviewed	94.15
COG4085		204	Predicted RNA-binding protein, contains TRAM domai	93.97
PRK06293		161	single-stranded DNA-binding protein; Provisional	93.96
PRK12445		505	lysyl-tRNA synthetase; Reviewed	93.83
PLN02502		553	lysyl-tRNA synthetase	93.76
PRK06958		182	single-stranded DNA-binding protein; Provisional	93.74
PTZ00385		659	lysyl-tRNA synthetase; Provisional	93.7
PRK06752		112	single-stranded DNA-binding protein; Validated	93.48
PRK08402		355	replication factor A; Reviewed	93.17
TIGR00458		428	aspS_arch aspartyl-tRNA synthetase, archaeal type.	93.17
PRK08763		164	single-stranded DNA-binding protein; Provisional	93.16
TIGR01259		120	comE comEA protein. This model describes the ComEA	93.13
PTZ00401		550	aspartyl-tRNA synthetase; Provisional	93.03
PF10451		256	Stn1: Telomere regulation protein Stn1; InterPro:	93.02
PF13263		56	PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3	92.88
PRK07211		485	replication factor A; Reviewed	92.83
TIGR00621		164	ssb single stranded DNA-binding protein (ssb). Thi	92.01
PRK06863		168	single-stranded DNA-binding protein; Provisional	92.01
PRK05159		437	aspC aspartyl-tRNA synthetase; Provisional	91.94
PF00436		104	SSB: Single-strand binding protein family; InterPr	91.89
PRK15491		374	replication factor A; Provisional	91.82
PRK02801		101	primosomal replication protein N; Provisional	91.65
PRK12820		706	bifunctional aspartyl-tRNA synthetase/aspartyl/glu	91.62
TIGR00457		453	asnS asparaginyl-tRNA synthetase. In a multiple se	91.57
PF15072		86	DUF4539: Domain of unknown function (DUF4539)	91.52
PRK07274		131	single-stranded DNA-binding protein; Provisional	91.52
TIGR00459		583	aspS_bact aspartyl-tRNA synthetase, bacterial type	91.51
PLN02903		652	aminoacyl-tRNA ligase	91.17
PTZ00417		585	lysine-tRNA ligase; Provisional	91.13
PRK07772		186	single-stranded DNA-binding protein; Provisional	91.07
PRK13732		175	single-stranded DNA-binding protein; Provisional	91.03
COG0017		435	AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl	90.83
PRK06642		152	single-stranded DNA-binding protein; Provisional	90.83
PRK00476		588	aspS aspartyl-tRNA synthetase; Validated	90.81
PLN02850		530	aspartate-tRNA ligase	90.71
PRK02515		132	psbU photosystem II complex extrinsic protein prec	90.58
PRK10917		681	ATP-dependent DNA helicase RecG; Provisional	90.56
PRK08182		148	single-stranded DNA-binding protein; Provisional	90.39
PRK02983		1094	lysS lysyl-tRNA synthetase; Provisional	90.28
PRK07211		485	replication factor A; Reviewed	90.18
TIGR00643		630	recG ATP-dependent DNA helicase RecG.	90.09
COG1190		502	LysU Lysyl-tRNA synthetase (class II) [Translation	89.83
PRK09010		177	single-stranded DNA-binding protein; Provisional	89.8
cd04496		100	SSB_OBF SSB_OBF: A subfamily of OB folds similar t	89.14
cd04497		138	hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB f	89.08
PRK06341		166	single-stranded DNA-binding protein; Provisional	89.06
PRK15491		374	replication factor A; Provisional	88.79
cd04475		101	RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds cor	88.79
PF02765		146	POT1: Telomeric single stranded DNA binding POT1/C	88.52
COG4464		254	CapC Capsular polysaccharide biosynthesis protein	88.45
PRK12366		637	replication factor A; Reviewed	88.29
PLN02603		565	asparaginyl-tRNA synthetase	88.07
PRK05733		172	single-stranded DNA-binding protein; Provisional	87.71
KOG3108\|consensus		265		87.66
TIGR00617		608	rpa1 replication factor-a protein 1 (rpa1). This f	87.04
PLN02221		572	asparaginyl-tRNA synthetase	86.91
PRK05813		219	single-stranded DNA-binding protein; Provisional	86.87
PRK00448		1437	polC DNA polymerase III PolC; Validated	86.49
PRK12366		637	replication factor A; Reviewed	84.72
COG1107		715	Archaea-specific RecJ-like exonuclease, contains D	84.64
PF12228		592	DUF3604: Protein of unknown function (DUF3604); In	84.62
PRK07218		423	replication factor A; Provisional	83.97
PRK04036		504	DNA polymerase II small subunit; Validated	83.79
PRK14699		484	replication factor A; Provisional	83.72
KOG3416\|consensus		134		83.14
PRK06386		358	replication factor A; Reviewed	82.76
PRK07218		423	replication factor A; Provisional	82.51
COG2176		1444	PolC DNA polymerase III, alpha subunit (gram-posit	82.45
PRK05813		219	single-stranded DNA-binding protein; Provisional	81.94
COG1200		677	RecG RecG-like helicase [DNA replication, recombin	81.39
PRK14699		484	replication factor A; Provisional	81.23
cd04480		86	RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of unc	80.93
PRK06386		358	replication factor A; Reviewed	80.72

>PRK06920 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

Probab=100.00  E-value=1e-289  Score=2686.18  Aligned_cols=1094  Identities=35%  Similarity=0.587  Sum_probs=1033.7

Q ss_pred             ccccccccccCchhhccccHHHHHHHHHHcCCCEEEEecCCchhhHHHHHHHHHhCCCeeEeeeeeeecccccCCCCccE
Q psy9396           4 QFIHLRLHSEYSIIDGLLRINDVIEAAANDYQPALAITDLSNLFGIIKFYKSAYNKGIKPIIGCDVWITNEIENKKPSRL   83 (1149)
Q Consensus         4 ~fv~LHvHS~ySlldg~~~ieeLV~~Ake~G~~AlAITDH~nl~G~~~f~~~ak~~GIKpIiG~Ei~v~~~~~~~~~~hl   83 (1149)
                      +||||||||+||+|||+++|++||++|+++||+||||||||||||+++||++|+++|||||+|||+++.+.. ....+|+
T Consensus         2 ~fvhLhvhS~ySlLdg~~~i~~lv~~A~~~g~~alAlTDh~~m~Ga~~F~~~a~~~gIkPIiG~e~~v~~~~-~~~~~~l   80 (1107)
T PRK06920          2 KFVHLQCQTVFSLLKSACKIDELVVRAKELGYSSLAITDENVMYGVIPFYKACKKHGIHPIIGLTASIFSEE-EEKSYPL   80 (1107)
T ss_pred             CceeeecCcccchhccCCCHHHHHHHHHHCCCCEEEEEeCChHhHHHHHHHHHHHcCCCEeeeeEEEEecCC-CCCcccE
Confidence            499999999999999999999999999999999999999999999999999999999999999999997532 1235799


Q ss_pred             EEEEcccHHHHHHHHHHHHHHHhhccCCcccccHHHHhccccCCCeEEEeCCCcchHHHHHhcCChHHHHHHHHHHHHhC
Q psy9396          84 LLLVKNNNGYLQLCELLSKAYIENINYGRAEIRIEWLEKNKYQDGLIALSGAHLGDIGIAVQNGRNDIAENFARRWSKIF  163 (1149)
Q Consensus        84 llLAkN~~Gy~nL~kL~S~~~~~~~~~~~p~i~~e~L~~~~~~~glIiis~~~~g~i~~~l~~~~~~~a~~~~~~~~~~f  163 (1149)
                      +|||||++||+|||+|+|.+++++    +|++++++|.+  |++|||++|+|..|++.+++..++.+.|.+.+.+|.++|
T Consensus        81 ~LLAkn~~Gy~nL~kL~S~~~~~~----~p~i~~~~L~~--~~~gLi~ls~~~~g~i~~~l~~~~~~~a~~~~~~~~~~F  154 (1107)
T PRK06920         81 VLLAENEIGYQNLLKISSSIMTKS----KEGIPKKWLAH--YAKGLIAISPGKDGEIEQLLLEDKESQAEEVARAYQNMF  154 (1107)
T ss_pred             EEEeCCHHHHHHHHHHHHHHHhcC----CCCCCHHHHHh--hCCCCEEEeCCCcchHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            999999999999999999998764    59999999999  999999999999999999999999999999999999999


Q ss_pred             C-CCeEEEEccCCCcchHHHHHHHHHHHHhcCCCEEEecCccccCccCchHHHHHHHHHcCCccccccccccCCcCCCCC
Q psy9396         164 P-DNFYIEIQRFKQPNMNFQIQQFINIASNINLPIVATHPIQFLKKTEFLAHEVRTCIAEGEILSNTKRIKKFTKEQNFK  242 (1149)
Q Consensus       164 ~-~~~ylEi~~~~~~~~~~~n~~l~~lA~~~~iplVatnDvhyl~~eD~~~~~vL~aI~~g~~l~~~~~~~~~~~~~~~~  242 (1149)
                      + ++||+|++.  .++++.+|+.++++|+++|+|+||||||||++++|+.+|++|.||++|++++++++....++++||+
T Consensus       155 g~~~~yle~~~--~~~~~~~~~~l~~la~~~~iplVatndvhyl~~eD~~~~~vl~~I~~g~~l~d~~~~~~~~~~~ylk  232 (1107)
T PRK06920        155 GNFYMSLQHHA--IQDELLLQEKLPEFSNRVNIPVVATNDVRYINQSDALVHECLLSVESGTKMTDPDRPRLKTDQYYLK  232 (1107)
T ss_pred             CCCeEEEEecC--chhHHHHHHHHHHHHHHhCCCEEEeCCccccCHhHHHHHHHHHHHHcCCCcccccccccCCcccccC
Confidence            8 689998876  4578899999999999999999999999999999999999999999999999999877778899999


Q ss_pred             CHHHHHHHhcChHHHHHHHHHHHHhccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhCCChhhhhhhhHH
Q psy9396         243 TQSEMIKLFYDIPSAIQNTIEIAKRCNLKLEFGKPKLPKFPTPKNININDFLISKSKHGLKKRLLNLYKDPEIYKCEKLR  322 (1149)
Q Consensus       243 s~~em~~~f~~~~~a~~nt~~ia~~c~~~~~~~~~~lP~~~~p~~~~~~~~l~~l~~~gl~~r~~~~~~~~~~~~~~~~~  322 (1149)
                      |++||.++|+++|+|++||.+||++|++++++++++||+|+.|++.++++||+++|++|+++||+..          .++
T Consensus       233 s~~Em~~~f~~~~eal~NT~~Ia~~c~~~l~~~~~~lP~f~~p~g~~~~~~L~~l~~~Gl~~Ry~~~----------~~~  302 (1107)
T PRK06920        233 SSDEMEALFSHVPEAIYNTVEIAERCRVEIPFHVNQLPKFPVPSNETADMYLRRVCEEGLQKRYGTP----------KEV  302 (1107)
T ss_pred             CHHHHHHHhcccHHHHHHHHHHHHhcceecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHcCCC----------cHH
Confidence            9999999999999999999999999999999999999999999999999999999999999998531          257


Q ss_pred             HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhCCCcccCCCcchhHHHHHHHhcCCccCCCCCCCcceeccCCCCCCCC
Q psy9396         323 YKKRLQFEIETIIKMNFSGYFLIVSDFIQWAKNNSIPVGPGRGSGASSLVAYSLSITDIDPLSYNLLFERFLNPNRISMP  402 (1149)
Q Consensus       323 ~~~Rl~~EL~vI~~~gf~~YFLiv~D~v~~ak~~gi~vGpGRGSaagSlVaY~LgIT~vDPl~~~LlFERFLnpeR~smP  402 (1149)
                      |++||+|||+||++|||+||||||||||+|||++||+||||||||||||||||||||+||||+|||||||||||||+|||
T Consensus       303 y~~RL~~EL~vI~~mGf~~YFLIV~D~i~~Ak~~gI~VGPGRGSaAGSLVaY~LgIT~VDPl~y~LlFERFLNpeR~smP  382 (1107)
T PRK06920        303 HINRLNHELNVISRMGFSDYFLIVWDFMKYAHENHILTGPGRGSAAGSLVSYVLEITDIDPIEYDLLFERFLNPERVTLP  382 (1107)
T ss_pred             HHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCCEeCCCcchHHHHHHHHHhCCCccCccccCCcHHhhcCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeecCCCchHhHHHHHHHHhCcccEEEEEecccchhhhHHHHHHHhcCCCHHHHHHHHccCCCCCCCCcchHHHhhhC
Q psy9396         403 DFDIDFCPEGRDRVIQYVKDRYGKDAVSQIVTFGTMAAKGAIRDVGRVLDLRYSFCDSISKLIPFKPGKLITLSNAIKEE  482 (1149)
Q Consensus       403 DIDiDf~~~~R~~vi~yv~~kYG~~~Va~I~Tf~t~~ak~airdv~r~lg~~~~~~~~i~k~ip~~~~~~~~l~~a~~~~  482 (1149)
                      |||||||++||++||+||++|||++|||||+|||||+||+||||||||||+|+.++|++||+||..++  +||++|++++
T Consensus       383 DIDiDF~~~rR~eVi~Yv~~kYG~~~VaqI~TfgT~~ak~AiRDv~Rvlg~~~~~~d~iak~ip~~~~--~tl~~a~~~~  460 (1107)
T PRK06920        383 DIDIDFPDTRRDEMIRYVKDKYGQLRVAQIVTFGTLAAKAAIRDIARVMGLPPRDIDIFSKLIPSKLG--ITLKDAYEES  460 (1107)
T ss_pred             CcccccccccHHHHHHHHHHHhCcccEEEEeeehhhHHHHHHHHHHHHhCCCHHHHHHHHhcCCCcCC--CCHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999888  9999999999


Q ss_pred             hHHHHHhhccHHHHHHHHHHHHcccccCCccccccEEEEcCCCCCccccceeeCCCCceEeeccccchhhcCCcceeccC
Q psy9396         483 PQLAERIKNEEEVRQLIELAKQVEGIIRNVGMHAGGVLIAPSKLINFCPLYKQEGMTGIISQYDKDDIEEIGLIKFDFLG  562 (1149)
Q Consensus       483 ~~l~~~~~~~~~~~~l~~~a~~leGl~r~~~~HaaGvvIs~~~l~~~~Pl~~~~~~~~~~tq~d~~~~e~~GLlK~D~LG  562 (1149)
                      |+|++++.+++.+++|+++|++|||+|||+|+||||||||++||+++|||+.++++ .++|||||+++|++|||||||||
T Consensus       461 ~~l~~~~~~~~~~~~l~~~A~~lEGlpR~~s~HAaGvVIs~~pL~~~vPl~~~~~~-~~vtQ~d~~~vE~~GLlK~DfLG  539 (1107)
T PRK06920        461 QSLREFIQGNLLHERVFEIAKRVEGLPRHTSIHAAGVIMSQEPLTGSVAIQEGHND-VYVTQYPADALEELGLLKMDFLG  539 (1107)
T ss_pred             hhhhhhcccCHHHHHHHHHHHHhcCCCCCCCcCCCEEEEECCccccccCeeECCCC-CEEecccCchHHHcCCceEEECC
Confidence            99999999999999999999999999999999999999999999999999998766 79999999999999999999999


Q ss_pred             CCcHHHHHHHHHHHHhhcCCCCCcCCCCCCCCCHHHHHHHhcCCcCccccCCCHhHHHHHHhcCCCCHHHHHHHHhccCC
Q psy9396         563 LTTLSILDKTIYFIKKINTKTTNFSLNKLPLNDKDTYNLLKKANTVAVFQLESQGMKNMLKEAKPDYFEEIIALISLYRP  642 (1149)
Q Consensus       563 l~~Ltii~~~~~~i~~~~~~~~~id~~~ip~dD~~t~~ll~~g~T~GvFQ~ES~gm~~~l~~~~P~~f~dl~a~~aL~RP  642 (1149)
                      |+|||+|++|+++|+++++  .++|+++||+||++||+||++|+|.|||||||+|||++|++++|++|+||+|++|||||
T Consensus       540 L~~LtiI~~~~~~I~~~~g--~~id~~~ipldD~~t~~Ll~~G~T~GVFQlES~Gmr~~L~~lkP~~feDiia~~ALyRP  617 (1107)
T PRK06920        540 LRNLTLLENIIKFIEQKTG--KEIDIRNLPLQDEKTFQLLGRGDTTGVFQLESSGMRNVLRGLKPNEFEDIVAVNSLYRP  617 (1107)
T ss_pred             CCchHHHHHHHHHHHhhhC--CccChhcCCCCCHHHHHHHhcCCCeeECCCCcHHHHHHHHHcCCCCHHHHHHHHhhcCC
Confidence            9999999999999999874  88999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccchHHHHHhhcC-CCCCCCCcchhhccccccCeehhHHHHHHHHHHHcCCCchhhhHHHHHhCCCChHHHHHHHHHH
Q psy9396         643 GPMDLIKNFCRRKHG-EYFNYPDPRTKDVLSETYGIMVYQEQVMQIAQILGGYSLGQADLLRRAIGKKKTSEMIEHRKFF  721 (1149)
Q Consensus       643 Gp~~~i~~yi~rk~g-~~v~y~~p~l~~iL~~TyGvivYQEQvM~ia~~~agfs~~eAD~lRram~KK~~~~m~~~~~~F  721 (1149)
                      |||++|++||+|||| ++++|+||.|++||++|||||||||||||||+++||||+||||.||||||||+.++|+++|++|
T Consensus       618 GPm~~i~~yi~rkhg~e~v~y~hp~L~~IL~~TyGVivYQEQVMqia~~~AGfslgeAD~LRrAm~KK~~~~m~~~r~~F  697 (1107)
T PRK06920        618 GPMEQIPTFIESKHGKRKIEYLHPDLKPILERTYGVIVYQEQIMQIASKLAGFSLGEADLLRRAVSKKNRDILDQERKHF  697 (1107)
T ss_pred             cchhcchHHHHhcCCCCCCCCCCHHHHHHHHhhcCCceeHHHHHHHHHHHcCCCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            999999999999999 9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCHHHHHHHHHHHHHhcccCCChhhHHHHHHHHHHHHHHhhcChHHHHHHhcccccCChHHHHHHHHHHHhh
Q psy9396         722 QNGAIKYGLSKHKANEIFNEIEKFAGYGFNKSHATAYALLSYYTAYLKTHYSSFFMAANLSLSMDDTNKIKILVKDAIKT  801 (1149)
Q Consensus       722 ~~ga~~~g~~~~~a~~i~~~i~~fa~YgFnksHa~aYa~~ay~~AylK~~yP~~f~~a~l~~~~~~~~k~~~~~~e~~~~  801 (1149)
                      ++||++||++++.|++||++|++||+||||||||+|||++||||||||||||+|||||+||+.+++.+|+..|+.||++ 
T Consensus       698 i~ga~~~G~~~~~a~~If~~i~~Fa~YgFnKSHa~AYa~iayqtAyLKahyP~eF~aall~~~~~~~~k~~~~i~e~~~-  776 (1107)
T PRK06920        698 VQGCLQNGYDETSAEKIYDLIVRFANYGFNRSHAVAYSMIGYQLAYLKANYTLEFMTALLSSAIGNEDKIVQYIRETKR-  776 (1107)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhccHHHHHHHHhhcCcCCcHHHHHHHHHHHH-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCeeeCCcccccCCCceeeeecCCCCCeEEecccccCCccHHHHHHHHHHHhcCCCCCHHHHHhhcccCCCCHHHHHHH
Q psy9396         802 CGLSILPPNINLSKYYFFPIIESDGKHKKIRYGLGAIKGTGKSTIEAIVTERKFGFFTNLFDFTKRIDKKYINRRIINSL  881 (1149)
Q Consensus       802 ~gi~ilppdin~S~~~f~~~~~~~~~~~~I~~gl~~Ikgvg~~~~~~i~~~r~~g~f~~~~df~~r~~~~~~~~~~le~L  881 (1149)
                      +||+|+|||||+|.+.|+++      ++.||+||++|||||++++++|+++|++|||+|++|||.|++.+.+||+++|+|
T Consensus       777 ~gi~vlpPdin~S~~~f~~~------~~~Ir~gL~~Ikgvg~~~~~~Iv~~R~~g~f~s~~Df~~R~~~~~~nk~~le~L  850 (1107)
T PRK06920        777 KGFHVLPPSLQRSGYNFQIE------GNAIRYSLLSIRNIGMATVTALYEEREKKMFEDLFEFCLRMPSKFVTERNLEAF  850 (1107)
T ss_pred             cCCEEeCCeeecCCCCcEEE------CCeeEechhhcCCCCHHHHHHHHHHhhcCCCCCHHHHHHHHhccCCCHHHHHHH
Confidence            99999999999999999997      468999999999999999999999999899999999999999999999999999


Q ss_pred             HHcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcccccccccCCCCCCChHHHHHHHHHHhCcccccc
Q psy9396         882 INSGAFDCFNEKRYMLVASIDVALKNAEKTKKFINQLSLFKNDDNNNLKEYLNYVKVPSWSKKQELIEEKKVLGFCLSEH  961 (1149)
Q Consensus       882 i~~Gafd~~~~~R~~ll~~l~~~~~~~~~~~~~~~~~~q~~L~~~~~~~~~~~~~~~~~~~~~e~l~~EkE~LG~yls~H  961 (1149)
                      |++||||+||.||++|+++++.+++.+..          ++......  ..+.+++.++|+..|++++|+|+||||+|+|
T Consensus       851 i~aGafD~~~~~R~~l~~~l~~~~~~~~~----------f~~~~~~~--~~~~~~~~~~~~~~e~l~~E~e~lG~yls~H  918 (1107)
T PRK06920        851 VWSGCFDDFGVSRTNLWKSLKGALEYANL----------ARDLGDAV--PKSKYVQGEELSFIEQLNKEKEVLGFYLSSY  918 (1107)
T ss_pred             HHcCCcccccccHHHHHHHHHHHHHHHhh----------cccccccc--cccCCCCCCCCChhhHHHHHHHHHCcccCcC
Confidence            99999999999999999999988876532          11100010  1124567889999999999999999999999


Q ss_pred             chHHHHHHHhhcccccccccCC--CCceEEEEEEEeeeEeeecCC-cEEEEEEEeCCceEEEEEchHHHHHHHhhccCCc
Q psy9396         962 IFCIYETEIRQFIPIYLSELKP--TYSCTVSGIITELKLKTTYRG-KILIIVIDDNSNSVEVIINNQLYEKNKNILKENE 1038 (1149)
Q Consensus       962 Pl~~~~~~l~~~~~~~i~~l~~--~~~v~v~G~I~~vk~~~TK~G-~mafltleD~tg~ie~vvFp~~y~~~~~~l~~~~ 1038 (1149)
                      |++.|+..++.+..+++.++..  +..++++|+|+++|+++||+| +|||+++||.||.+|++|||++|++++..+.++.
T Consensus       919 Pl~~~~~~l~~~~~~~~~~l~~~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~~y~~~~~~l~~~~  998 (1107)
T PRK06920        919 PTAQYVKLAKELEIPSLAQAMRHKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPETYIHFSDKLQEGA  998 (1107)
T ss_pred             chHHHHHHHHHhCCcCHHHHhhcCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHHHHHHHHHHhccCC
Confidence            9999999999888778888753  237999999999999999999 8999999999999999999999999999999999


Q ss_pred             EEEEEEEEEeeccCCceEEEEccccccHHHHH---hcCcEEEEEecCc---chHHHHHHHHHhcCCCCCccEEEEEEecC
Q psy9396        1039 LLIVSGKVLEDRFLKNIRINAEKIFDINVARI---LYGKKFSVMFNRT---FNISILKKILLRFKCKNGLPFVLYYCINK 1112 (1149)
Q Consensus      1039 ~v~v~G~v~~~~~~~~~~ii~~~i~~l~~~~~---~~~~~l~i~l~~~---~~l~~l~~il~~~~G~G~~~V~l~~~~~~ 1112 (1149)
                      +|+|+|+|+.+  ++..+++++++.+++++..   ...+.++|+++..   ..+.+|+++|.+|+|  .+||++++. .+
T Consensus       999 ~~~v~G~v~~~--~~~~~~~~~~i~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~l~~~~G--~~~v~~~~~-~~ 1073 (1107)
T PRK06920        999 IVLVDGTIELR--NHKLQWIVNGLYPLEEMDAYEEKKDASVYVKLPSQYEKKLLNQVTKILFDYSG--FAKVLIYYE-KE 1073 (1107)
T ss_pred             EEEEEEEEEec--CCcEEEEEeecccHHHHhhhhhccCceEEEEeCCcCCHHHHHHHHHHHHhCCC--CceEEEEEc-CC
Confidence            99999999864  4678999999999988765   4456789998542   457899999999998  999999998 55


Q ss_pred             ceeEEEEcCCcceecCcHHHHHHHHh-cCcccEEEE
Q psy9396        1113 SIKYEMKFPLNYKVQPIDDLKLALIN-LGLYNAIIE 1147 (1149)
Q Consensus      1113 ~~~~~~~l~~~~~v~~~~~l~~~L~~-~G~~~v~i~ 1147 (1149)
                        .+.+.++..|+|+++++++.+|+. +|.+||+++
T Consensus      1074 --~~~~~l~~~~~v~~~~~~~~~l~~~~g~~~v~~~ 1107 (1107)
T PRK06920       1074 --HKMVQLSRSLSIHPSEECLGALREIVGEENVVVK 1107 (1107)
T ss_pred             --cEEEEcCCCcccCCCHHHHHHHHHhcCCcCEEeC
Confidence              467899999999999999999999 999999863

>PRK05673 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>PRK07374 dnaE DNA polymerase III subunit alpha; Validated	Back alignment and domain information

>PRK06826 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>COG0587 DnaE DNA polymerase III, alpha subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07279 dnaE DNA polymerase III DnaE; Reviewed	Back alignment and domain information

>TIGR00594 polc DNA-directed DNA polymerase III (polc)	Back alignment and domain information

>PRK05672 dnaE2 error-prone DNA polymerase; Validated	Back alignment and domain information

>PRK07135 dnaE DNA polymerase III DnaE; Validated	Back alignment and domain information

>PRK05898 dnaE DNA polymerase III DnaE; Validated	Back alignment and domain information

>PRK09532 DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type	Back alignment and domain information

>PRK00448 polC DNA polymerase III PolC; Validated	Back alignment and domain information

>PF07733 DNA_pol3_alpha: Bacterial DNA polymerase III alpha subunit; InterPro: IPR011708 This is a conserved region found in the the DNA polymerase III alpha subunit, (2	Back alignment and domain information

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK07373 DNA polymerase III subunit alpha; Reviewed	Back alignment and domain information

>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A	Back alignment and domain information

>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain	Back alignment and domain information

>smart00481 POLIIIAc DNA polymerase alpha chain like domain	Back alignment and domain information

>PRK06361 hypothetical protein; Provisional	Back alignment and domain information

>PRK09248 putative hydrolase; Validated	Back alignment and domain information

>cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit	Back alignment and domain information

>cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit	Back alignment and domain information

>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]	Back alignment and domain information

>COG1387 HIS2 Histidinol phosphatase and related hydrolases of the PHP family [Amino acid transport and metabolism / General function prediction only]	Back alignment and domain information

>cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE)	Back alignment and domain information

>PRK07328 histidinol-phosphatase; Provisional	Back alignment and domain information

>PRK08392 hypothetical protein; Provisional	Back alignment and domain information

>PRK00912 ribonuclease P protein component 3; Provisional	Back alignment and domain information

>PRK07945 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00375 conserved hypothetical protein TIGR00375	Back alignment and domain information

>TIGR01856 hisJ_fam histidinol phosphate phosphatase HisJ family	Back alignment and domain information

>PRK08609 hypothetical protein; Provisional	Back alignment and domain information

>PRK08123 histidinol-phosphatase; Reviewed	Back alignment and domain information

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands	Back alignment and domain information

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)	Back alignment and domain information

>cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>PRK05588 histidinol-phosphatase; Provisional	Back alignment and domain information

>PRK07329 hypothetical protein; Provisional	Back alignment and domain information

>PRK06740 histidinol-phosphatase; Validated	Back alignment and domain information

>PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain	Back alignment and domain information

>PRK13480 3'-5' exoribonuclease YhaM; Provisional	Back alignment and domain information

>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]	Back alignment and domain information

>cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS)	Back alignment and domain information

>cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1)	Back alignment and domain information

>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ	Back alignment and domain information

>PRK06461 single-stranded DNA-binding protein; Reviewed	Back alignment and domain information

>cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)	Back alignment and domain information

>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>COG1555 ComEA DNA uptake protein and related DNA-binding proteins [DNA replication, recombination, and repair]	Back alignment and domain information

>cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC)	Back alignment and domain information

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG	Back alignment and domain information

>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A	Back alignment and domain information

>COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS)	Back alignment and domain information

>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed	Back alignment and domain information

>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS)	Back alignment and domain information

>cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32)	Back alignment and domain information

>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]	Back alignment and domain information

>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs)	Back alignment and domain information

>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs	Back alignment and domain information

>cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB)	Back alignment and domain information

>TIGR00237 xseA exodeoxyribonuclease VII, large subunit	Back alignment and domain information

>COG1491 Predicted RNA-binding protein [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK08486 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PF04919 DUF655: Protein of unknown function (DUF655); InterPro: IPR007003 This family includes several uncharacterised archaeal proteins	Back alignment and domain information

>PRK03932 asnC asparaginyl-tRNA synthetase; Validated	Back alignment and domain information

>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS	Back alignment and domain information

>PRK07275 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK06751 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK07459 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial	Back alignment and domain information

>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS	Back alignment and domain information

>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region	Back alignment and domain information

>PRK00484 lysS lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only]	Back alignment and domain information

>PRK06293 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK12445 lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02502 lysyl-tRNA synthetase	Back alignment and domain information

>PRK06958 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PTZ00385 lysyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK06752 single-stranded DNA-binding protein; Validated	Back alignment and domain information

>PRK08402 replication factor A; Reviewed	Back alignment and domain information

>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type	Back alignment and domain information

>PRK08763 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>TIGR01259 comE comEA protein	Back alignment and domain information

>PTZ00401 aspartyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA	Back alignment and domain information

>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>TIGR00621 ssb single stranded DNA-binding protein (ssb)	Back alignment and domain information

>PRK06863 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK05159 aspC aspartyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>PRK02801 primosomal replication protein N; Provisional	Back alignment and domain information

>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional	Back alignment and domain information

>TIGR00457 asnS asparaginyl-tRNA synthetase	Back alignment and domain information

>PF15072 DUF4539: Domain of unknown function (DUF4539)	Back alignment and domain information

>PRK07274 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type	Back alignment and domain information

>PLN02903 aminoacyl-tRNA ligase	Back alignment and domain information

>PTZ00417 lysine-tRNA ligase; Provisional	Back alignment and domain information

>PRK07772 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK13732 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK06642 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK00476 aspS aspartyl-tRNA synthetase; Validated	Back alignment and domain information

>PLN02850 aspartate-tRNA ligase	Back alignment and domain information

>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional	Back alignment and domain information

>PRK10917 ATP-dependent DNA helicase RecG; Provisional	Back alignment and domain information

>PRK08182 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK02983 lysS lysyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK07211 replication factor A; Reviewed	Back alignment and domain information

>TIGR00643 recG ATP-dependent DNA helicase RecG	Back alignment and domain information

>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK09010 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>cd04496 SSB_OBF SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	Back alignment and domain information

>cd04497 hPOT1_OB1_like hPOT1_OB1_like: A subfamily of OB folds similar to the first OB fold (OB1) of human protection of telomeres 1 protein (hPOT1), the single OB fold of the N-terminal domain of Schizosaccharomyces pombe POT1 (SpPOT1), and the first OB fold of the N-terminal domain of the alpha subunit (OB1Nalpha) of Oxytricha nova telomere end binding protein (OnTEBP)	Back alignment and domain information

>PRK06341 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK15491 replication factor A; Provisional	Back alignment and domain information

>cd04475 RPA1_DBD_B RPA1_DBD_B: A subfamily of OB folds corresponding to the third OB fold, the ssDNA-binding domain (DBD)-B, of human RPA1 (also called RPA70)	Back alignment and domain information

>PF02765 POT1: Telomeric single stranded DNA binding POT1/CDC13; InterPro: IPR011564 This entry represents a domain that binds single stranded telomeric DNA and adopts an OB fold []	Back alignment and domain information

>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>PLN02603 asparaginyl-tRNA synthetase	Back alignment and domain information

>PRK05733 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>KOG3108\|consensus	Back alignment and domain information

>TIGR00617 rpa1 replication factor-a protein 1 (rpa1)	Back alignment and domain information

>PLN02221 asparaginyl-tRNA synthetase	Back alignment and domain information

>PRK05813 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>PRK00448 polC DNA polymerase III PolC; Validated	Back alignment and domain information

>PRK12366 replication factor A; Reviewed	Back alignment and domain information

>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]	Back alignment and domain information

>PF12228 DUF3604: Protein of unknown function (DUF3604); InterPro: IPR022028 This family of proteins is found in bacteria	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>PRK04036 DNA polymerase II small subunit; Validated	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>KOG3416\|consensus	Back alignment and domain information

>PRK06386 replication factor A; Reviewed	Back alignment and domain information

>PRK07218 replication factor A; Provisional	Back alignment and domain information

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK05813 single-stranded DNA-binding protein; Provisional	Back alignment and domain information

>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]	Back alignment and domain information

>PRK14699 replication factor A; Provisional	Back alignment and domain information

>cd04480 RPA1_DBD_A_like RPA1_DBD_A_like: A subgroup of uncharacterized plant OB folds with similarity to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70)	Back alignment and domain information

>PRK06386 replication factor A; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		1149
2hnh_A		910	Crystal Structure Of The Catalytic Alpha Subunit Of		0.0
2hqa_A		917	Crystal Structure Of The Catalytic Alpha Subunit Of		0.0
2hpi_A		1220	Eubacterial And Eukaryotic Replicative Dna Polymera		0.0
3e0d_A		1220	Insights Into The Replisome From The Crystral Struc		0.0
3f2b_A		1041	Dna Polymerase Polc From Geobacillus Kaustophilus C		5e-25

>pdb|2HNH|A Chain A, Crystal Structure Of The Catalytic Alpha Subunit Of E. Coli Replicative Dna Polymerase Iii Length = 910