Psyllid ID: psy9403

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------
MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGTN
cccccccHHHHHHHHHHHHcccccccccccccccEEEccccccccccccHHHHHHHHHcccccEEEEccccccccccHHHHHHHccccccccHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHcccccHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHcccccccccccccccccccccccccccEEEEEEcccEEEEEccccccccccccccHHHHHHHHHHHHccccccccHHHccccccccccccccccccHHcccccccccccHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEccEEEEEEEEccEEEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEEEEEccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEEcccHHHHHHHHHHccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccEEEEEccEEEHHHHcHHHHHHcccccccccccccccccccccccccccccccccHHHHHHccccEEEEEEccccccccccEEEEEEEEEEEEEEccEEcccccccEEEEEHHHHHccccEEEccccccccccccccccccEEEccccccEEEEcEEEcccc
cccccccHHHHHHHHHHHHHccccccccccccccEEEEcccccHHHHHHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHEEEEEcccccHHHHEHccccHHHHHHHHHHHHcccccccEEEEccccccEccccccccEEEEEEccccccEccHHccccccccccccccccEEEEHEEccccccccccccccccccEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccEEEEEEcccccEEEcccEEEcccEEcccccEEEEEEcccccEEcccHccHHHHHHHHHHHHHHHHHccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEEEccccEHHccccEEEEEEEEEEEccccEEEcccccccccccHHccHHHHHHHHHHHHHHHHHHcccccccccccEEEEccccccEEEEHHHcccccccccccccccEcccccHEEccccEEEEEcccccccccEEEEcccccccccEEEEEccEEHccHHHHHHHHHcccccccccccccccccccccccccHcccccccHHHHHHHHHcccEEEcccccEEEEcccEEEEEccEEEEEEcccEEcccccEEEEcccHHHHHHEEEEcccccccccccEcccccccccccccccEEEEccEEEcccc
MRIKGESVEEISGFLNAINslfipleipiskyapiiipsyngsrrfMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQplsipalrlvsythPEYLKILSDyfynekslGDIFLmqgtegevipnicnskqiihwfhdnkytkltkeqnkeisfpknsnindnVLWIQSVldnklpipstiINQVKNCILIsqknihplniarsillepfdldEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGivktgnfsinqgvgvraisgdktaffysddisknTLINAVKSTRSIANQSNGKIKIIKNIKKikinslysftdtissINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITrndglivadirPLVQLFVTIIVEkngrreignsgcggrynynyFTDMILEKCVSNSVNSALInleakpapagimkvvlgpgwpgiLLHEAIghglegdfnrkgssafsncigkriaskeitivdngtlanrrgsiniddegnptqcTTLIENGILKGYMQDIMNARLMNMSITgnarresfahipiprmtntymlngkfhpeEIISSVknglyatnfsggqvditngkfVFSASKAYIIkngkitypvkgatlighgpniLKKVSMIgndmkldpgvgvcgkdgqmvpvgvgqptlkidsitvggtn
MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKeisfpknsnindNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAvkstrsianqsngkikiiknikkikinslysftdtissinirekIKLLERVekiarlkdprvikvianlsgeydVILITRNDGLIVADIRPLVQLFVTIIvekngrreignsgcggRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIgkriaskeitivdngtlanrrgsiniddegnptqCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGqmvpvgvgqptlkidsitvggtn
MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSkkkaikylklkrlVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGkikiiknikkikinSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGTN
**********ISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKE***EISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKID********
MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYT***************SNINDNVLWIQSVLDNKLPIPSTIINQVK******************ILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR*********************NSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNG*********GGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG**
MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGTN
*****ESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNI*KIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVG***
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iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRIKGESVEEISGFLNAINSLFIPLEIPISKYAPIIIPSYNGSRRFMNVIPLLALLLSKKGIPVFIHGIKKNFGRITTYEILKKLGYFAVSSKKKAIKYLKLKRLVFMDISILIPELSKLLEIYYMLGIRNSSHLLVKIIQPLSIPALRLVSYTHPEYLKILSDYFYNEKSLGDIFLMQGTEGEVIPNICNSKQIIHWFHDNKYTKLTKEQNKEISFPKNSNINDNVLWIQSVLDNKLPIPSTIINQVKNCILISQKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query737 2.2.26 [Sep-21-2011]
P0AGH0481 Protein TldD OS=Shigella yes N/A 0.640 0.981 0.548 1e-150
P0AGG8481 Protein TldD OS=Escherich N/A N/A 0.640 0.981 0.548 1e-150
P0AGG9481 Protein TldD OS=Escherich yes N/A 0.640 0.981 0.548 1e-150
P45297482 Protein TldD homolog OS=H yes N/A 0.645 0.987 0.530 1e-150
Q8K9F2483 Protein TldD homolog OS=B yes N/A 0.632 0.964 0.503 1e-138
P57478483 Protein TldD homolog OS=B yes N/A 0.630 0.962 0.506 1e-137
Q89AE1483 Protein TldD homolog OS=B yes N/A 0.629 0.960 0.515 1e-135
Q58403451 Uncharacterized protein M yes N/A 0.578 0.944 0.320 8e-53
P74002489 Uncharacterized protein s N/A N/A 0.592 0.893 0.306 5e-50
O26944454 Uncharacterized protein M yes N/A 0.611 0.993 0.289 8e-48
>sp|P0AGH0|TLDD_SHIFL Protein TldD OS=Shigella flexneri GN=tldD PE=3 SV=1 Back     alignment and function desciption
 Score =  534 bits (1376), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 264/481 (54%), Positives = 359/481 (74%), Gaps = 9/481 (1%)

Query: 262 LNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSI 321
           LN+    LL    L  + L  ILG + + ++DY D YFQ + +E+W+LE+ I+K G+++I
Sbjct: 3   LNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNI 62

Query: 322 NQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQS-NGKIKIIKNIKKIKINSL 380
           +QGVGVRAISG+KT F Y+D IS   L  + ++ R+I   S +GK++ +  ++    + L
Sbjct: 63  DQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQTLGAVEH---SPL 119

Query: 381 YSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADI 440
           Y+  D + S++  EK+ +L RV+K+AR  D RV +V A+LSG Y++IL+   DG + AD+
Sbjct: 120 YTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLSGVYELILVAATDGTLAADV 179

Query: 441 RPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYF-----TDMILEKCVSNSVNSALINLE 495
           RPLV+L V+++VE++G+RE G SG GGR+ Y +F      ++  +     +V  AL+NL 
Sbjct: 180 RPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLDGEVRADAWAKEAVRMALVNLS 239

Query: 496 AKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDN 555
           A  APAG M VVLG GWPG+LLHEA+GHGLEGDFNR+G+S FS  +G+ +AS+  T+VD+
Sbjct: 240 AVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDD 299

Query: 556 GTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIP 615
           GT+ +RRGS+ IDDEG P Q   LIENGILKGYMQD +NARLM M+ TGN RRES+AH+P
Sbjct: 300 GTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGMTPTGNGRRESYAHLP 359

Query: 616 IPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKIT 675
           +PRMTNTYML GK  P+EII SV+ G+YA NF GGQVDIT+GKFVFS S+AY+I+NGK+T
Sbjct: 360 MPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVT 419

Query: 676 YPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
            PVKGATLIG G   ++++SM+GND+KLD GVGVCGK+GQ +PVGVGQPTLK+D++TVGG
Sbjct: 420 KPVKGATLIGSGIETMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGG 479

Query: 736 T 736
           T
Sbjct: 480 T 480
Suppresses the inhibitory activity of the carbon storage regulator (CsrA).
Shigella flexneri (taxid: 623)
>sp|P0AGG8|TLDD_ECOLI Protein TldD OS=Escherichia coli (strain K12) GN=tldD PE=1 SV=1 Back     alignment and function description
>sp|P0AGG9|TLDD_ECOL6 Protein TldD OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=tldD PE=3 SV=1 Back     alignment and function description
>sp|P45297|TLDD_HAEIN Protein TldD homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tldD PE=3 SV=1 Back     alignment and function description
>sp|Q8K9F2|TLDD_BUCAP Protein TldD homolog OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=tldD PE=3 SV=1 Back     alignment and function description
>sp|P57478|TLDD_BUCAI Protein TldD homolog OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=tldD PE=3 SV=1 Back     alignment and function description
>sp|Q89AE1|TLDD_BUCBP Protein TldD homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=tldD PE=3 SV=1 Back     alignment and function description
>sp|Q58403|Y996_METJA Uncharacterized protein MJ0996 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0996 PE=3 SV=2 Back     alignment and function description
>sp|P74002|Y1322_SYNY3 Uncharacterized protein slr1322 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1322 PE=3 SV=1 Back     alignment and function description
>sp|O26944|Y856_METTH Uncharacterized protein MTH_856 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_856 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query737
398834868486 putative Zn-dependent protease-like prot 0.652 0.989 0.692 0.0
134094101486 microcin B17 maturation protein [Hermini 0.652 0.989 0.694 0.0
152981200486 TldD protein [Janthinobacterium sp. Mars 0.652 0.989 0.692 0.0
427402906486 hypothetical protein HMPREF9710_03499 [M 0.652 0.989 0.667 0.0
445495209486 protein TldD [Janthinobacterium sp. HH01 0.652 0.989 0.698 0.0
399019623486 putative Zn-dependent protease-like prot 0.652 0.989 0.690 0.0
340788432486 TldD protein, probably a protease [Colli 0.652 0.989 0.708 0.0
409405224486 Zn-dependent protease [Herbaspirillum sp 0.652 0.989 0.688 0.0
300310755486 Zn-dependent protease [Herbaspirillum se 0.652 0.989 0.690 0.0
393777737486 antibiotic maturation peptidase [Ralston 0.654 0.991 0.647 0.0
>gi|398834868|ref|ZP_10592268.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. YR522] gi|398219947|gb|EJN06410.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
 Score =  733 bits (1891), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/481 (69%), Positives = 411/481 (85%)

Query: 256 QKNIHPLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVK 315
           + N+  L +AR +LL PF LDE  LLK LG+MF +KVDYAD YFQFTK+E W LEEGIVK
Sbjct: 5   EPNMGALQVARDVLLTPFGLDESGLLKALGSMFTHKVDYADLYFQFTKSEGWSLEEGIVK 64

Query: 316 TGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGKIKIIKNIKKI 375
           TG+FSI+QGVGVRA+SGDKTAF YSD+IS+  L+ A  +TRSIA Q  G++K+   +   
Sbjct: 65  TGSFSIDQGVGVRAVSGDKTAFSYSDEISERALMEAAAATRSIARQGAGRVKVAGTMIPA 124

Query: 376 KINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGL 435
              +LY   D ++S++   K+KLLERVE+IAR KDPRV++V+A+LSGEYDV+L+ R DG+
Sbjct: 125 GSRALYLPHDPLNSLDATAKVKLLERVERIARAKDPRVVQVMASLSGEYDVVLVARADGV 184

Query: 436 IVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLE 495
           + ADIRPLV++ VT+I E+NGRRE+G+SG GGRYNY YFTD +LE+  S +V++AL+NL+
Sbjct: 185 LAADIRPLVRVSVTVIAEQNGRREVGSSGGGGRYNYAYFTDDLLEQYASEAVSTALVNLD 244

Query: 496 AKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDN 555
           ++PAPAG M VVLGPGWPG+LLHEAIGHGLEGDFNRKGSS FS  IG+R+A+K +T+VD+
Sbjct: 245 SRPAPAGPMTVVLGPGWPGVLLHEAIGHGLEGDFNRKGSSTFSGRIGERVAAKGVTVVDD 304

Query: 556 GTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIP 615
           GT+A+RRGS+N+DDEGN TQCTTLIE+GILKGYMQD MNARLM M +TGNARRESFAH+P
Sbjct: 305 GTIADRRGSLNVDDEGNATQCTTLIEDGILKGYMQDTMNARLMKMPVTGNARRESFAHLP 364

Query: 616 IPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKIT 675
           +PRMTNTYML G  HPEEI++SVKNGLYA NF GGQVDITNGKFVFSAS+AY+I++G+IT
Sbjct: 365 MPRMTNTYMLAGDRHPEEILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIEDGRIT 424

Query: 676 YPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
           YPVKGATLIG+GP++L +VSMIGNDM+LD GVGVCGK+GQ VPVGVGQPTL+ID +TVGG
Sbjct: 425 YPVKGATLIGNGPDVLNRVSMIGNDMRLDSGVGVCGKEGQSVPVGVGQPTLRIDGVTVGG 484

Query: 736 T 736
           T
Sbjct: 485 T 485

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|134094101|ref|YP_001099176.1| microcin B17 maturation protein [Herminiimonas arsenicoxydans] gi|133738004|emb|CAL61049.1| Protein tldD homolog [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|152981200|ref|YP_001352527.1| TldD protein [Janthinobacterium sp. Marseille] gi|151281277|gb|ABR89687.1| TldD protein [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|427402906|ref|ZP_18893903.1| hypothetical protein HMPREF9710_03499 [Massilia timonae CCUG 45783] gi|425718712|gb|EKU81659.1| hypothetical protein HMPREF9710_03499 [Massilia timonae CCUG 45783] Back     alignment and taxonomy information
>gi|445495209|ref|ZP_21462253.1| protein TldD [Janthinobacterium sp. HH01] gi|444791370|gb|ELX12917.1| protein TldD [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|399019623|ref|ZP_10721769.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. CF444] gi|398097514|gb|EJL87818.1| putative Zn-dependent protease-like protein [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|340788432|ref|YP_004753897.1| TldD protein, probably a protease [Collimonas fungivorans Ter331] gi|340553699|gb|AEK63074.1| TldD protein, probably a protease [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|409405224|ref|ZP_11253686.1| Zn-dependent protease [Herbaspirillum sp. GW103] gi|386433773|gb|EIJ46598.1| Zn-dependent protease [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|300310755|ref|YP_003774847.1| Zn-dependent protease [Herbaspirillum seropedicae SmR1] gi|300073540|gb|ADJ62939.1| Zn-dependent protease protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|393777737|ref|ZP_10366028.1| antibiotic maturation peptidase [Ralstonia sp. PBA] gi|392715534|gb|EIZ03117.1| antibiotic maturation peptidase [Ralstonia sp. PBA] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query737
TIGR_CMR|CPS_4553481 CPS_4553 "tldD protein" [Colwe 0.641 0.983 0.562 2.6e-141
UNIPROTKB|P0AGG8481 tldD "protease involved in Mic 0.641 0.983 0.545 7.2e-139
TIGR_CMR|SO_4091482 SO_4091 "tldD protein" [Shewan 0.636 0.973 0.549 1.1e-137
TIGR_CMR|CBU_1467477 CBU_1467 "TldD protein" [Coxie 0.641 0.991 0.550 1.3e-137
UNIPROTKB|Q48EA2479 tldD "TldD protein" [Pseudomon 0.632 0.972 0.558 1.7e-137
UNIPROTKB|Q9KUU3481 VC_0422 "TldD protein" [Vibrio 0.641 0.983 0.525 2.2e-130
TIGR_CMR|VC_0422481 VC_0422 "tldD protein" [Vibrio 0.641 0.983 0.525 2.2e-130
TIGR_CMR|ECH_0152467 ECH_0152 "tldD protein" [Ehrli 0.597 0.942 0.516 6.9e-118
TIGR_CMR|APH_1310473 APH_1310 "TldD protein" [Anapl 0.628 0.978 0.48 2.2e-112
UNIPROTKB|Q5LNX6473 SPO3077 "TldD/PmbA family prot 0.594 0.926 0.470 5.9e-112
TIGR_CMR|CPS_4553 CPS_4553 "tldD protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 1382 (491.5 bits), Expect = 2.6e-141, P = 2.6e-141
 Identities = 271/482 (56%), Positives = 351/482 (72%)

Query:   262 LNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSI 321
             +NI    LL    +DE++L K L +M   +VDYADFYFQ +++E W+LE+GIVK G+++I
Sbjct:     1 MNIVEKSLLSDSHIDEEMLSKTLNSMMGRQVDYADFYFQASQHETWVLEDGIVKEGSYNI 60

Query:   322 NQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQSNGXXXXXXXXXXXXXXSLY 381
              +GVGVRAISG+KT F YSDDI+   L  A  + + IA+   G               +Y
Sbjct:    61 ERGVGVRAISGEKTGFAYSDDITPEALQKAADAAKGIADSGTGASVKAFSRQSPI--EVY 118

Query:   382 SFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIR 441
                + + S+   +KI LL +VE  AR  D RV +VIA++SG Y+ IL++ +DG    DIR
Sbjct:   119 QSVEPLGSLTQEQKIDLLHQVEAHARQVDSRVKQVIASISGVYETILVSASDGTFGTDIR 178

Query:   442 PLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMIL--EK-----CVSNSVNSALINL 494
             PLV+L  +++VE+NG+RE  ++G G R +Y+YF ++     K         SV  AL+NL
Sbjct:   179 PLVRLNCSVLVEENGKRERASAGGGARTDYSYFFEVEAGDNKPRYLAYAEESVRQALVNL 238

Query:   495 EAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVD 554
              A  APAG   VVLG GWPG+LLHEA+GHGLEGDFNRKGSSAFS  +G+++ S+  TIVD
Sbjct:   239 VAIEAPAGTFPVVLGAGWPGVLLHEAVGHGLEGDFNRKGSSAFSGKVGQQVTSELCTIVD 298

Query:   555 NGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHI 614
             +GTLANRRGSI+IDDEG P Q   LIE GILKGYMQD  NA LM +  TGN RRES+AH+
Sbjct:   299 DGTLANRRGSISIDDEGTPGQYNVLIEKGILKGYMQDKHNAGLMGVKPTGNGRRESYAHL 358

Query:   615 PIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKI 674
             P+PRMTNTYML G+  PE+II SVK G+YA NF+GGQVDIT+GKFVF++S+AY+I++GKI
Sbjct:   359 PMPRMTNTYMLAGESSPEDIIKSVKKGIYAPNFAGGQVDITSGKFVFTSSEAYLIEDGKI 418

Query:   675 TYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVG 734
             T PVKGATLIG+GP  +K++SM+GND+KLD GVGVCGKDGQ +PVGVGQPTLK+D +T+G
Sbjct:   419 TSPVKGATLIGNGPEAMKRISMVGNDLKLDAGVGVCGKDGQSIPVGVGQPTLKVDEMTIG 478

Query:   735 GT 736
             GT
Sbjct:   479 GT 480
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS
UNIPROTKB|P0AGG8 tldD "protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4091 SO_4091 "tldD protein" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1467 CBU_1467 "TldD protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q48EA2 tldD "TldD protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KUU3 VC_0422 "TldD protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_0422 VC_0422 "tldD protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0152 ECH_0152 "tldD protein" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|APH_1310 APH_1310 "TldD protein" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
UNIPROTKB|Q5LNX6 SPO3077 "TldD/PmbA family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8K9F2TLDD_BUCAPNo assigned EC number0.50300.63220.9648yesN/A
P0AGG9TLDD_ECOL6No assigned EC number0.54880.64040.9812yesN/A
P45297TLDD_HAEINNo assigned EC number0.53010.64580.9875yesN/A
Q89AE1TLDD_BUCBPNo assigned EC number0.51570.62950.9606yesN/A
P57478TLDD_BUCAINo assigned EC number0.50630.63090.9627yesN/A
P0AGH0TLDD_SHIFLNo assigned EC number0.54880.64040.9812yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query737
PRK10735481 PRK10735, tldD, protease TldD; Provisional 0.0
COG0312454 COG0312, TldD, Predicted Zn-dependent proteases an 1e-154
PRK08136317 PRK08136, PRK08136, glycosyl transferase family pr 3e-81
pfam01523289 pfam01523, PmbA_TldD, Putative modulator of DNA gy 1e-69
COG0547338 COG0547, TrpD, Anthranilate phosphoribosyltransfer 1e-29
PRK09071323 PRK09071, PRK09071, hypothetical protein; Validate 3e-18
PRK07394342 PRK07394, PRK07394, hypothetical protein; Provisio 1e-06
PRK11040446 PRK11040, PRK11040, peptidase PmbA; Provisional 1e-05
PRK14607534 PRK14607, PRK14607, bifunctional glutamine amidotr 2e-04
>gnl|CDD|182685 PRK10735, tldD, protease TldD; Provisional Back     alignment and domain information 
 Score =  637 bits (1645), Expect = 0.0
 Identities = 262/482 (54%), Positives = 359/482 (74%), Gaps = 9/482 (1%)

Query: 261 PLNIARSILLEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFS 320
            LN+    LL    L+ + L  ILG + + ++DY D YFQ + +E+W+LE+ I+K G+++
Sbjct: 2   SLNLVSEQLLAANGLNHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYN 61

Query: 321 INQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTRSIAN-QSNGKIKIIKNIKKIKINS 379
           I+QGVGVRAISG+KT F Y+D IS   L  + ++ R+I     +GK++    +  ++ + 
Sbjct: 62  IDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRDSGDGKVQ---TLGAVEHSP 118

Query: 380 LYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVAD 439
           LY+  D + S++  EK+ +L RV+K+AR  D RV +V A+L+G Y++IL+   DG + AD
Sbjct: 119 LYTSLDPLQSMSREEKLDILRRVDKVARAADKRVQEVTASLTGVYELILVAATDGTLAAD 178

Query: 440 IRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFT-----DMILEKCVSNSVNSALINL 494
           +RPLV+L V+++VE++G+RE G SG GGR+ Y YF      ++  +     +V  AL+NL
Sbjct: 179 VRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEYFLADLDGEVRADAWAKEAVRMALVNL 238

Query: 495 EAKPAPAGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVD 554
            A  APAG M VVLG GWPG+LLHEA+GHGLEGDFNR+G+S FS  +G+ +AS+  T+VD
Sbjct: 239 SAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVD 298

Query: 555 NGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHI 614
           +GT+ +RRGS+ IDDEG P Q   LIENGILKGYMQD +NARLM ++ TGN RRES+AH+
Sbjct: 299 DGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQDKLNARLMGVAPTGNGRRESYAHL 358

Query: 615 PIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKI 674
           P+PRMTNTYML GK  P+EII SV+ G+YA NF GGQVDIT+GKFVFS S+AY+I+NGK+
Sbjct: 359 PMPRMTNTYMLAGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFSTSEAYLIENGKV 418

Query: 675 TYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVG 734
           T PVKGATLIG G   ++++SM+GND+KLD GVGVCGK+GQ +PVGVGQPTLK+D++TVG
Sbjct: 419 TKPVKGATLIGSGIEAMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVG 478

Query: 735 GT 736
           GT
Sbjct: 479 GT 480

Length = 481
>gnl|CDD|223389 COG0312, TldD, Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only] Back     alignment and domain information
>gnl|CDD|236160 PRK08136, PRK08136, glycosyl transferase family protein; Provisional Back     alignment and domain information
>gnl|CDD|216551 pfam01523, PmbA_TldD, Putative modulator of DNA gyrase Back     alignment and domain information
>gnl|CDD|223621 COG0547, TrpD, Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|181637 PRK09071, PRK09071, hypothetical protein; Validated Back     alignment and domain information
>gnl|CDD|168934 PRK07394, PRK07394, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|182922 PRK11040, PRK11040, peptidase PmbA; Provisional Back     alignment and domain information
>gnl|CDD|237764 PRK14607, PRK14607, bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 737
PRK10735481 tldD protease TldD; Provisional 100.0
COG0312454 TldD Predicted Zn-dependent proteases and their in 100.0
PRK11040446 peptidase PmbA; Provisional 100.0
COG0547338 TrpD Anthranilate phosphoribosyltransferase [Amino 100.0
PRK07394342 hypothetical protein; Provisional 100.0
PRK08136317 glycosyl transferase family protein; Provisional 100.0
PLN02641343 anthranilate phosphoribosyltransferase 100.0
PRK09522531 bifunctional glutamine amidotransferase/anthranila 100.0
TIGR01245330 trpD anthranilate phosphoribosyltransferase. In ma 100.0
PRK14607534 bifunctional glutamine amidotransferase/anthranila 100.0
PRK00188339 trpD anthranilate phosphoribosyltransferase; Provi 100.0
PRK09071323 hypothetical protein; Validated 100.0
PF00591252 Glycos_transf_3: Glycosyl transferase family, a/b 100.0
PF01523293 PmbA_TldD: Putative modulator of DNA gyrase; Inter 100.0
KOG1438|consensus373 100.0
PRK06078434 pyrimidine-nucleoside phosphorylase; Reviewed 100.0
TIGR02644405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 99.97
PRK04350490 thymidine phosphorylase; Provisional 99.96
PRK05820440 deoA thymidine phosphorylase; Reviewed 99.91
TIGR02645493 ARCH_P_rylase putative thymidine phosphorylase. Me 99.9
TIGR02643437 T_phosphoryl thymidine phosphorylase. Thymidine ph 99.88
TIGR03327500 AMP_phos AMP phosphorylase. This enzyme family is 99.86
COG0213435 DeoA Thymidine phosphorylase [Nucleotide transport 97.72
PF0288566 Glycos_trans_3N: Glycosyl transferase family, heli 96.37
>PRK10735 tldD protease TldD; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.8e-94  Score=804.76  Aligned_cols=464  Identities=56%  Similarity=0.974  Sum_probs=428.5

Q ss_pred             CCCCCCCHHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHH
Q psy9403         270 LEPFDLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLI  349 (737)
Q Consensus       270 ~~~~~~~~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~  349 (737)
                      ++.|+++++.+.++++++++.|+|++|||++++++.++.+++++|+..+.+.+.|+||||+++|++||++|+++++++|+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~g~d~~Ev~~~~~~~~si~~~~g~ve~~~~~~~~GigvRVi~~g~~Gfast~dl~~~~l~   90 (481)
T PRK10735         11 LAANGLNHQDLFAILGQLAERRLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALE   90 (481)
T ss_pred             hcccCCCHHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCEeeEEEecCcceEEEEEEECCcEEEEEeCCCCHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcccC-CCccccccccccccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEEEEEEEEEEEEE
Q psy9403         350 NAVKSTRSIANQSN-GKIKIIKNIKKIKINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVIL  428 (737)
Q Consensus       350 ~ai~~A~~~A~~~~-~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  428 (737)
                      +++++|.++|+..+ +++..+..   ......|+..+++.++++++++++++++++.+++++++|..+.+.|+....++.
T Consensus        91 ~av~~A~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ekie~~~~~e~~~~~~d~~I~~v~~~~~~~~~~~~  167 (481)
T PRK10735         91 QSAQAARTIVRDSGDGKVQTLGA---VEHSPLYTSLDPLQSMSREEKLDILRRVDKVARAADKRVQEVTASLTGVYELIL  167 (481)
T ss_pred             HHHHHHHHHhhhccCCccccccc---ccccccccccCCcccCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEEEEEEEEE
Confidence            99999999999765 44332321   111122333334457899999999999999999989999998889999999999


Q ss_pred             EEEcCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccc-----cccHHHHHHHHHHHHHHhcCCCCCCCee
Q psy9403         429 ITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFT-----DMILEKCVSNSVNSALINLEAKPAPAGI  503 (737)
Q Consensus       429 i~nS~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~-----~~d~~~~~~~a~~~a~~~l~a~~i~~g~  503 (737)
                      |+||+|+.++++.+.+++++++++++++.+++++...+.+.+|++..     +.++++++++|+++|+.+|+++++++|+
T Consensus       168 i~nS~G~~~~~~~~~~~~~~~~va~~~g~~~~~~~~~~~~~g~e~~~~~~~~~l~~e~i~~~a~~~a~~~l~a~~i~~g~  247 (481)
T PRK10735        168 VAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEYFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGT  247 (481)
T ss_pred             EEeCCCCEEEEEeeEEEEEEEEEEEcCCEEEeeeccCCccCCchHhhcccccccCHHHHHHHHHHHHHHhcCCccCCCce
Confidence            99999999999999999999999998888877555555555665321     2278999999999999999999999999


Q ss_pred             EEEEeCCchHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCc
Q psy9403         504 MKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENG  583 (737)
Q Consensus       504 y~Vil~p~a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~G  583 (737)
                      |||||+|.+++.|+|++++|+|+|+++++|+|+|++|+|++|+|+.|||+|||++++++|+++|||||+|+|++.|||||
T Consensus       248 y~VIl~p~~~~~ll~~~~~~~~~~d~~~~g~S~l~~klG~~vas~~lti~Ddp~~~~~~gs~~fDdEGv~t~~~~lI~~G  327 (481)
T PRK10735        248 MPVVLGAGWPGVLLHEAVGHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENG  327 (481)
T ss_pred             eeEEECCcHHHHHHHHHhhhhhchhhHhhCCchhhhcCCCeeCCCccEEEECCCCCCCCcCCCcCCCCCCccccEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechhhccHHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEe
Q psy9403         584 ILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSA  663 (737)
Q Consensus       584 vLk~~l~d~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~  663 (737)
                      ||++||||+|||+++|++|||||+|.+|.++|.|+|+|++|+||+.+++|||+++++||||++++|+++||+||+||+++
T Consensus       328 vL~~~l~d~~tA~~~g~~sTGna~r~~~~~~p~~~~~N~~i~~g~~s~~eli~~~~~Gl~v~~~~g~~~n~~sGdFs~~~  407 (481)
T PRK10735        328 ILKGYMQDKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLAGKSTPQEIIESVEYGIYAPNFGGGQVDITSGKFVFST  407 (481)
T ss_pred             EEechhhhhHHHHHcCCCCCCCcccccCCCCCcCccceEEEeCCCCCHHHHHHhcCCEEEEEcCcCcccCCCceEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEEeCCeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403         664 SKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT  736 (737)
Q Consensus       664 ~~g~~IenG~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~  736 (737)
                      ..||+|||||+++||+++||+||++++|++|++||+|++|..+.++|||++|.+||++++|+|+|++|+|+|.
T Consensus       408 ~~g~~IenGei~~pV~~~~i~Gn~~~~L~~I~~vg~d~~~~~~~g~Cgk~~q~v~v~~g~P~i~v~~i~VgG~  480 (481)
T PRK10735        408 SEAYLIENGKVTKPVKGATLIGSGIEAMQQISMVGNDLKLDNGVGVCGKEGQSLPVGVGQPTLKVDNLTVGGT  480 (481)
T ss_pred             EEEEEEECCEEcceeeeEEEEecHHHHHHhhhhccccceeccCCCccCCCCcccccccCCCCEEEccEEEccC
Confidence            8899999999999999999999999999999999999999766789999999999999999999999999996

>COG0312 TldD Predicted Zn-dependent proteases and their inactivated homologs [General function prediction only] Back     alignment and domain information
>PRK11040 peptidase PmbA; Provisional Back     alignment and domain information
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK07394 hypothetical protein; Provisional Back     alignment and domain information
>PRK08136 glycosyl transferase family protein; Provisional Back     alignment and domain information
>PLN02641 anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>TIGR01245 trpD anthranilate phosphoribosyltransferase Back     alignment and domain information
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09071 hypothetical protein; Validated Back     alignment and domain information
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2 Back     alignment and domain information
>PF01523 PmbA_TldD: Putative modulator of DNA gyrase; InterPro: IPR002510 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG1438|consensus Back     alignment and domain information
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information
>PRK04350 thymidine phosphorylase; Provisional Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase Back     alignment and domain information
>TIGR02643 T_phosphoryl thymidine phosphorylase Back     alignment and domain information
>TIGR03327 AMP_phos AMP phosphorylase Back     alignment and domain information
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query737
1vpb_A451 Crystal Structure Of A Putative Modulator Of Dna Gy 2e-13
1vl4_A447 Crystal Structure Of A Putative Modulator Of A Dna 2e-11
3tv9_A457 Crystal Structure Of Putative Peptide Maturation Pr 4e-10
3qtd_A449 Crystal Structure Of Putative Modulator Of Gyrase ( 2e-09
3gbr_A345 Anthranilate Phosphoribosyl-Transferase (Trpd) Doub 3e-05
1o17_A345 Anthranilate Phosphoribosyl-Transferase (Trpd) Leng 6e-05
>pdb|1VPB|A Chain A, Crystal Structure Of A Putative Modulator Of Dna Gyrase (Bt3649) From Bacteroides Thetaiotaomicron Vpi-5482 At 1.75 A Resolution Length = 451 Back     alignment and structure 
Iteration: 1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 145/358 (40%), Gaps = 23/358 (6%)
Query: 350 NAVKSTRSIANQSNGXXXXXXXXXXXXXXSLYSFTDTISSINIREKIKLLERVEKIARLK 409
           N + STR +A                    L  +    +S+N  +KI++ + V + A  K
Sbjct: 96  NGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGK 155
Query: 410 DPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRY 469
           D R+I V ++     D      ++G           L   I +   G            Y
Sbjct: 156 DERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSADITIRGEGEARPS------AY 209
Query: 470 NYN---YFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPGWPGILLHEAIGHGLE 526
            Y    Y  D+I +     ++   L  L  K   +G   +V+ P     LL   I   L 
Sbjct: 210 WYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMI-SALN 268
Query: 527 GDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILK 586
           G   ++ +S   N + ++IAS  +T+ D   L    G+   D+EG  T+  ++ + G+L 
Sbjct: 269 GSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLN 328
Query: 587 GYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATN 646
            Y  D  NA+ M +  T            I   +   M  G  + + +I+ V+ G+  T 
Sbjct: 329 TYFIDTYNAKKMGVDPT------------ISGSSILVMETGDKNLDGLIAGVEKGILVTG 376
Query: 647 FSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLD 704
           F+GG  + + G F +   + ++I+NGK+T PV    + G+   +   +   GND +L+
Sbjct: 377 FNGGNNNSSTGDFSYGI-EGFLIENGKLTQPVSEMNVTGNLITLWNSLVATGNDPRLN 433
>pdb|1VL4|A Chain A, Crystal Structure Of A Putative Modulator Of A Dna Gyrase (Tm0727) From Thermotoga Maritima Msb8 At 1.95 A Resolution Length = 447 Back     alignment and structure
>pdb|3TV9|A Chain A, Crystal Structure Of Putative Peptide Maturation Protein From Shigella Flexneri Length = 457 Back     alignment and structure
>pdb|3QTD|A Chain A, Crystal Structure Of Putative Modulator Of Gyrase (Pmba) From Pseudomonas Aeruginosa Pao1 Length = 449 Back     alignment and structure
>pdb|3GBR|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Double Mutant D83g F149s From S. Solfataricus Length = 345 Back     alignment and structure
>pdb|1O17|A Chain A, Anthranilate Phosphoribosyl-Transferase (Trpd) Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query737
3qtd_A449 PMBA protein; putative modulator of gyrase (PMBA), 1e-146
1vpb_A451 Putative modulator of DNA gyrase; structural genom 1e-144
3tv9_A457 Putative peptide maturation protein; structural ge 1e-125
1vl4_A447 PMBA-related protein; structural genomics, joint c 3e-92
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural genomics, PS biology, midwest center for structural genomics, MCSG; 2.70A {Pseudomonas aeruginosa} Length = 449 Back     alignment and structure
 Score =  434 bits (1118), Expect = e-146
 Identities = 83/475 (17%), Positives = 174/475 (36%), Gaps = 41/475 (8%)

Query: 269 LLEPFDLDE--KILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVG 326
            + P  L +  + + +I+    +      +      +  +  + +G V+T  F+ +QG G
Sbjct: 7   AVGPSVLPDLREQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFG 66

Query: 327 VRAISGDKTAFFYSDDISKNTLINAVKSTRSIANQS-----NGKIKIIKNIKKIKINSLY 381
           +   +G +     +    +  +   V +  +IA  +      G        +++    LY
Sbjct: 67  ITLYAGQRKGSASTSATGEAAIRETVAAALAIARHTSEDECAGLADAALMARELPELDLY 126

Query: 382 SFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRN-DGLIVADI 440
                   ++  + ++     E  A   D RV K        +    +  N  G I    
Sbjct: 127 HPWS----LSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGNSHGFIGGYA 182

Query: 441 RPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAP 500
                L   +I E  G+ +        R      +    E     +   A   L A+P  
Sbjct: 183 STRHSLSCVMIAEGEGQMQRDYWYDVNRRGEALAS---AESIGRRAAERAASRLGARPVQ 239

Query: 501 AGIMKVVLGPGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLAN 560
              + V+  P     L    +G  + G    + SS     +G+R+  + ++I +   L  
Sbjct: 240 TAEVPVLFAPEIAVGLFGHFLGA-ISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVG 298

Query: 561 RRGSINIDDEGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMT 620
             GS + D +G  T     +ENG L  Y+    + R + +  T NA            + 
Sbjct: 299 ALGSASFDSDGLATYAKPFVENGELVSYVLGTYSGRKLGLPSTANA----------GGVH 348

Query: 621 NTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKG 680
           N ++ +G      +I  ++ GL  T   G  V++  G +   A+  Y ++NG+I +PV+ 
Sbjct: 349 NLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAA-GYWVENGEIQFPVQE 407

Query: 681 ATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
            T+  +  ++ +++  +G D++    +                 ++ ++S+ V G
Sbjct: 408 VTIAANLRDLFRRIVAVGKDIERRGNLHT--------------GSVLVESMMVAG 448
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1 Length = 451 Back     alignment and structure
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri} Length = 457 Back     alignment and structure
>1vl4_A PMBA-related protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS regulation; 1.95A {Thermotoga maritima} SCOP: d.283.1.1 Length = 447 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query737
3qtd_A449 PMBA protein; putative modulator of gyrase (PMBA), 100.0
1vl4_A447 PMBA-related protein; structural genomics, joint c 100.0
3tv9_A457 Putative peptide maturation protein; structural ge 100.0
1vpb_A451 Putative modulator of DNA gyrase; structural genom 100.0
1khd_A345 Anthranilate phosphoribosyltransferase; type 3 PRT 100.0
1o17_A345 Anthranilate PRT, anthranilate phosphoribosyltrans 100.0
1vqu_A374 Anthranilate phosphoribosyltransferase 2; 17130499 100.0
2elc_A329 Trp D, anthranilate phosphoribosyltransferase; str 100.0
3r88_A377 Anthranilate phosphoribosyltransferase; anthranili 100.0
4hkm_A346 Anthranilate phosphoribosyltransferase; structural 100.0
2dsj_A423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 100.0
3h5q_A436 PYNP, pyrimidine-nucleoside phosphorylase; structu 100.0
2tpt_A440 Thymidine phosphorylase; transferase, salvage path 100.0
1brw_A433 PYNP, protein (pyrimidine nucleoside phosphorylase 100.0
1uou_A474 Thymidine phosphorylase; transferase, glycosyltran 100.0
>3qtd_A PMBA protein; putative modulator of gyrase (PMBA), structural genomics, PS biology, midwest center for structural genomics, MCSG; 2.70A {Pseudomonas aeruginosa} Back     alignment and structure
Probab=100.00  E-value=5.7e-85  Score=732.95  Aligned_cols=428  Identities=18%  Similarity=0.284  Sum_probs=395.5

Q ss_pred             HHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHH
Q psy9403         277 EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR  356 (737)
Q Consensus       277 ~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~  356 (737)
                      ++.++++|+.+++.|++++||+++++++.++++++|+|+++..+.+.|++|||++|+|+||++++++++++|++++++|+
T Consensus        17 ~~~~~~~l~~a~~~gad~aev~~~~~~~~sv~~~~g~v~~~~~~~~~g~gvRv~~~~~~G~ast~~ls~~~l~~~v~~A~   96 (449)
T 3qtd_A           17 REQVEQIIAEARRQGASACEVAVSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAAL   96 (449)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEEEEETTEEEEEEESCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEEEeeeEEEEEECCEeeEEEeeeeeeEEEEEEECCeEEEEEeCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccC-CCccccccccccccCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEE-EEEEEEEEEEEEEE
Q psy9403         357 SIANQSN-GKIKIIKNIKKIKINSLYS---FTDTISSINIREKIKLLERVEKIARLKDPRVIKVI-ANLSGEYDVILITR  431 (737)
Q Consensus       357 ~~A~~~~-~~~~~~~~~~~~~~~~~y~---~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~i~n  431 (737)
                      ++|+..+ +++..+++  +......|+   ..+|. ++++++++++++++++.++++|++|.++. ++|+....++.|+|
T Consensus        97 ~~A~~~~~d~~~~l~~--~~~~~~~~~~~~~~~p~-~~~~~e~i~ll~~~~~~a~~~d~~i~~~~~~~~~~~~~~~~~~n  173 (449)
T 3qtd_A           97 AIARHTSEDECAGLAD--AALMARELPELDLYHPW-SLSPEQAVERALACEAAAFAADKRVTKADGTTLNTHQGCRVYGN  173 (449)
T ss_dssp             HHHHHSCCCTTCSCCC--GGGBCSCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCTTEEEEEEEEEEEEEEEEEEEE
T ss_pred             HHhhccCCCcccCCCC--hhhcccccCcccccCcc-cCCHHHHHHHHHHHHHHHHhcCCCEEEECcEEEEEEEEEEEEEe
Confidence            9999887 55555553  111111121   12343 78999999999999999999999999887 79999999999999


Q ss_pred             cCCCeeEEeeeEEEEEEEEEEEeCCeeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeCCc
Q psy9403         432 NDGLIVADIRPLVQLFVTIIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLGPG  511 (737)
Q Consensus       432 S~G~~~~~~~~~~~~~~~~~a~~g~~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~p~  511 (737)
                      |+|+++++.++.+++++++++++++.++++|++.+++. ++.+.  ++++++++|+++|+.+|+++++|+|+|||||+|.
T Consensus       174 S~G~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~-~~~l~--~~~~i~~~a~~~a~~~L~a~~~~~G~~~Vvl~p~  250 (449)
T 3qtd_A          174 SHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDVNRR-GEALA--SAESIGRRAAERAASRLGARPVQTAEVPVLFAPE  250 (449)
T ss_dssp             TTSCEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEESS-GGGSC--CHHHHHHHHHHHHHHTTTCBCCCCEEEEEEECHH
T ss_pred             CCCceEEEeeceEEEEEEEEEEcCCceeeeeeeccccC-hhHcc--CHHHHHHHHHHHHHHhcCCccCCCCeEEEEECCh
Confidence            99999999999999999999999999999999887775 43332  6899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhhcc
Q psy9403         512 WPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYMQD  591 (737)
Q Consensus       512 a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l~d  591 (737)
                      +++.|+|++++ +++++++++|+|+|++|+|++|+|+.|||+|||++|+++||++|||||+|+++++|||||||++||||
T Consensus       251 ~~~~ll~~~~~-~~~g~~v~~g~S~l~~klG~~v~s~~vti~dDp~~~~~~gs~~fDdEGv~t~~~~lIe~GvL~~~l~d  329 (449)
T 3qtd_A          251 IAVGLFGHFLG-AISGGSLYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYVLG  329 (449)
T ss_dssp             HHHHHHHHHHH-HTBHHHHHTTCCTTTTCTTCBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCBCC
T ss_pred             HHHHHHHHHHH-hcChhhHhcCCCcccccCCCEecCCceEEEECCCCCCCCCCCCCCCCCCcCCccEEEECCEEcccccC
Confidence            99999999887 89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEEeC
Q psy9403         592 IMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKN  671 (737)
Q Consensus       592 ~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~Ien  671 (737)
                      ++||+++|++|||||+          +|+|++|+||+.+++|||+++++||||++++|+++||+||+||+++. ||||||
T Consensus       330 ~~~A~~~G~~~TGna~----------~~~N~~i~~G~~s~eeli~~~~~Gl~v~~~~G~~vn~~tG~fs~~~~-gy~Ien  398 (449)
T 3qtd_A          330 TYSGRKLGLPSTANAG----------GVHNLFVSHGDEDQAALIRRMERGLLVTELMGQGVNLVTGDYSRGAA-GYWVEN  398 (449)
T ss_dssp             HHHHHHHTSCCCSCTT----------CCSSEEECCCSCCHHHHHHHHCSEEEEEEEESCCBCTTTCEEEEEEE-EEEEET
T ss_pred             HHHHHHhCCCCCcCcc----------CcceEEEeCCCCCHHHHHHhcCCEEEEEeccCCCcCCCCceEEeEEE-EEEEEC
Confidence            9999999999999997          68999999999999999999999999999999999999999999995 999999


Q ss_pred             CeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEecC
Q psy9403         672 GKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGGT  736 (737)
Q Consensus       672 G~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G~  736 (737)
                      |||++||+++||+||++++|++|++||+|+++.+              +..+|+|+|++|+|+|+
T Consensus       399 Gei~~pV~~~ti~Gn~~~~l~~I~~vg~d~~~~~--------------~~~~Psi~i~~~~V~G~  449 (449)
T 3qtd_A          399 GEIQFPVQEVTIAANLRDLFRRIVAVGKDIERRG--------------NLHTGSVLVESMMVAGR  449 (449)
T ss_dssp             TEEEEEEEEEEEEEEHHHHHHTEEEECSCCCCSS--------------SEECCCEEEEEEEEECC
T ss_pred             CEEeeeeeeEEEEEcHHHHHHhhHhhccCcEecC--------------CCcCCeEEECcEEEecC
Confidence            9999999999999999999999999999999874              24689999999999996
>1vl4_A PMBA-related protein; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS regulation; 1.95A {Thermotoga maritima} SCOP: d.283.1.1 Back     alignment and structure
>3tv9_A Putative peptide maturation protein; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta, cytosol; 2.50A {Shigella flexneri} Back     alignment and structure
>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP: d.283.1.1 Back     alignment and structure
>1khd_A Anthranilate phosphoribosyltransferase; type 3 PRT fold, nucleotide binding fold; 1.86A {Pectobacterium carotovorum} SCOP: a.46.2.1 c.27.1.1 PDB: 1kgz_A Back     alignment and structure
>1o17_A Anthranilate PRT, anthranilate phosphoribosyltransferase, TRPD; nucleoside-phosphorylases; 2.05A {Sulfolobus solfataricus} SCOP: a.46.2.1 c.27.1.1 PDB: 1gxb_A 1zxy_A* 1zyk_A* 2gvq_A* 3gbr_A* Back     alignment and structure
>1vqu_A Anthranilate phosphoribosyltransferase 2; 17130499, structur genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI; 1.85A {Nostoc SP} Back     alignment and structure
>2elc_A Trp D, anthranilate phosphoribosyltransferase; structural genomics, NPPSFA, national project O structural and functional analyses; 1.55A {Thermus thermophilus} SCOP: a.46.2.1 c.27.1.1 PDB: 1v8g_A Back     alignment and structure
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A Back     alignment and structure
>4hkm_A Anthranilate phosphoribosyltransferase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; HET: MSE CXS; 1.95A {Xanthomonas campestris PV} Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus} Back     alignment and structure
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 737
d1vpba_439 d.283.1.1 (A:) Putative modulator of DNA gyrase BT 3e-75
d1vl4a_433 d.283.1.1 (A:) PmbA-related protein TM0727 {Thermo 2e-70
d2elca2264 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltra 8e-07
d1o17a2273 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltra 3e-06
d1khda2264 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltra 0.001
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 439 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Putative modulator of DNA gyrase, PmbA/TldD
superfamily: Putative modulator of DNA gyrase, PmbA/TldD
family: Putative modulator of DNA gyrase, PmbA/TldD
domain: Putative modulator of DNA gyrase BT3649
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score =  247 bits (632), Expect = 3e-75
 Identities = 88/466 (18%), Positives = 173/466 (37%), Gaps = 35/466 (7%)

Query: 274 DLDEKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGD 333
           D ++K+    +    KN    A      + N ++ L +  +     +   G+ +      
Sbjct: 4   DENKKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDG 63

Query: 334 KTAFFYSDDISKNTLINAVKSTRSIANQSNGK----IKIIKNIKKIKINSLYSFTDTISS 389
           +     ++ +++  L   +K+               +       K     L  +    +S
Sbjct: 64  RYGSISTNRLNRKELETFIKNGIDSTRYLAKDEARVLADPSRYYKGGKPDLKLYDAKFAS 123

Query: 390 INIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILITRNDGLIVADIRPLVQLFVT 449
           +N  +KI++ + V + A  KD R+I V ++     D      ++G           L   
Sbjct: 124 LNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSAD 183

Query: 450 IIVEKNGRREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLG 509
           I +   G             +  Y  D+I +     ++   L  L  K   +G   +V+ 
Sbjct: 184 ITIRGEGEA---RPSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVD 240

Query: 510 PGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDD 569
           P     LL   I     G   ++ +S   N + ++IAS  +T+ D   L    G+   D+
Sbjct: 241 PMNSSRLLSPMISAL-NGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDN 299

Query: 570 EGNPTQCTTLIENGILKGYMQDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKF 629
           EG  T+  ++ + G+L  Y  D  NA+ M +               I   +   M  G  
Sbjct: 300 EGIATERRSIFDKGVLNTYFIDTYNAKKMGV------------DPTISGSSILVMETGDK 347

Query: 630 HPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYIIKNGKITYPVKGATLIGHGPN 689
           + + +I+ V+ G+  T F+GG  + + G F +     ++I+NGK+T PV    + G+   
Sbjct: 348 NLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIE-GFLIENGKLTQPVSEMNVTGNLIT 406

Query: 690 ILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG 735
           +   +   GND +L+    +              P+L  + +   G
Sbjct: 407 LWNSLVATGNDPRLNSSWRI--------------PSLVFEGVDFSG 438
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]} Length = 433 Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Length = 264 Back     information, alignment and structure
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 273 Back     information, alignment and structure
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Length = 264 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query737
d1vpba_439 Putative modulator of DNA gyrase BT3649 {Bacteroid 100.0
d1vl4a_433 PmbA-related protein TM0727 {Thermotoga maritima [ 100.0
d1o17a2273 Anthranilate phosphoribosyltransferase (TrpD) {Arc 100.0
d1khda2264 Anthranilate phosphoribosyltransferase (TrpD) {Pec 100.0
d2elca2264 Anthranilate phosphoribosyltransferase (TrpD) {The 100.0
d1brwa2260 Pyrimidine nucleoside phosphorylase {Bacillus stea 100.0
d1uoua2273 Thymidine phosphorylase {Human (Homo sapiens) [Tax 100.0
d2tpta2265 Thymidine phosphorylase {Escherichia coli [TaxId: 100.0
d1khda169 Anthranilate phosphoribosyltransferase (TrpD) {Pec 97.0
d1o17a170 Anthranilate phosphoribosyltransferase (TrpD) {Arc 96.54
d1brwa170 Pyrimidine nucleoside phosphorylase {Bacillus stea 95.17
d1uoua168 Thymidine phosphorylase {Human (Homo sapiens) [Tax 94.07
d2tpta170 Thymidine phosphorylase {Escherichia coli [TaxId: 94.02
>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Putative modulator of DNA gyrase, PmbA/TldD
superfamily: Putative modulator of DNA gyrase, PmbA/TldD
family: Putative modulator of DNA gyrase, PmbA/TldD
domain: Putative modulator of DNA gyrase BT3649
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=100.00  E-value=1.6e-80  Score=695.78  Aligned_cols=425  Identities=21%  Similarity=0.308  Sum_probs=383.6

Q ss_pred             HHHHHHHHHHHhhCCCCEEEEEEEEEEEEEEEEECCeeeEeEEEEEeeEEEEEEECCeEEEEEcCCCCHHHHHHHHHHHH
Q psy9403         277 EKILLKILGNMFKNKVDYADFYFQFTKNENWILEEGIVKTGNFSINQGVGVRAISGDKTAFFYSDDISKNTLINAVKSTR  356 (737)
Q Consensus       277 ~~~~~~il~~a~~~g~~~~ei~~~~~~~~~i~~~~~~l~~~~~~~~~gigvRv~~~gr~G~a~t~~l~~~~l~~ai~~A~  356 (737)
                      +++++++|++|++.|+++|||+++++++.++++++|+|++...+.+.|+||||++|||+||++|+++|+++|++++++|+
T Consensus         7 ~~lae~~l~~a~~~Ga~~aev~~~~~~~~si~~~~g~le~~~~~~~~gigiRVi~dgr~G~ast~~l~~~~l~~~v~~A~   86 (439)
T d1vpba_           7 KKLAQWAMDYALKNGCQAAKVLLYSSSNTSFELRDAKMDRLQQASEGGLSLSLYVDGRYGSISTNRLNRKELETFIKNGI   86 (439)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEC--CCEEEEEEEEEEEEEEEETTEEEEEEESCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCEEEEEEEeeeeEEEEEECCEeeEEEEcccccEEEEEEECCEEEEEEeCCCCHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcccC-CCcccccccccc-----ccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhccCCCEEEEEEEEEEEEEEEEEE
Q psy9403         357 SIANQSN-GKIKIIKNIKKI-----KINSLYSFTDTISSINIREKIKLLERVEKIARLKDPRVIKVIANLSGEYDVILIT  430 (737)
Q Consensus       357 ~~A~~~~-~~~~~~~~~~~~-----~~~~~y~~~~~~~~~~~~e~~e~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~  430 (737)
                      ++|+..+ +++..+|+....     .....|+  +++.++++++++++++++++.+++.++++..+.++|+.....+.++
T Consensus        87 ~~Ak~~~~d~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~e~~ie~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  164 (439)
T d1vpba_          87 DSTRYLAKDEARVLADPSRYYKGGKPDLKLYD--AKFASLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRL  164 (439)
T ss_dssp             HHHTTSCCCTTCCCCCGGGBCCSCCCCCCCSC--TTGGGCCHHHHHHHHHHHHHTTTTSCTTEEEEEEEEEEEEEEEEEE
T ss_pred             HHhhhcccCcccccccchhhcccCCcccceec--ccccccCHHHHHHHHHHHHHHhhhcccceeeeccceeeeeeEEEEE
Confidence            9999987 666666631111     0111222  2345689999999999999999999999988888999999999999


Q ss_pred             EcCCCeeEEeeeEEEEEEEEEEEeCC-eeeeecccccccccccccccccHHHHHHHHHHHHHHhcCCCCCCCeeEEEEeC
Q psy9403         431 RNDGLIVADIRPLVQLFVTIIVEKNG-RREIGNSGCGGRYNYNYFTDMILEKCVSNSVNSALINLEAKPAPAGIMKVVLG  509 (737)
Q Consensus       431 nS~G~~~~~~~~~~~~~~~~~a~~g~-~~~~~~~~~~~r~~~~~l~~~d~~~~~~~a~~~a~~~l~a~~i~~g~y~Vil~  509 (737)
                      ||+|+..+++++.+++++.+++..++ .+.++|++.+.+. ++.+   +++.++++|+++|+..++++++++|+|||||+
T Consensus       165 nS~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~a~~~a~~~l~a~~~~~g~~~Vil~  240 (439)
T d1vpba_         165 ISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLY-MNDL---IKKGIGQKALERVLRKLGQKKVQSGKYTMVVD  240 (439)
T ss_dssp             ETTTEEEEEEEEEEEEEEEEEECCSTTCCCEEEEEEEESS-GGGS---CCSSHHHHHHHHHHTTTTCBCCCCEEEEEEEC
T ss_pred             ecCCceeEEEEEEeeeeeEEEEEecccccccccceecccc-cccc---CHHHHHHHHHHHhhhhccccccccceeeEEee
Confidence            99999999999999999988887543 4556776665553 3322   67889999999999999999999999999999


Q ss_pred             CchHHHHHHHHHhhccccchhhcCCCccccccCccccCCceEEEEcCCCCCCCCCccccCCCccccceeEEeCceechhh
Q psy9403         510 PGWPGILLHEAIGHGLEGDFNRKGSSAFSNCIGKRIASKEITIVDNGTLANRRGSINIDDEGNPTQCTTLIENGILKGYM  589 (737)
Q Consensus       510 p~a~~~ll~~~~~~~~~a~~v~~g~S~l~~klG~~v~s~~lti~DDP~~~~~~gs~~fDdEGv~t~~~~LIe~GvLk~~l  589 (737)
                      |.+++.|+|+++ +.++++++++|+|+|++|+|++|+||.|||+|||++++++||++|||||+|+++++|||||||++||
T Consensus       241 p~~~~~ll~~~~-~~~~~~~~~~g~S~l~~~lg~~v~s~~lti~ddp~~~~~~~s~~fDdEGv~t~~~~lIe~Gvl~~~l  319 (439)
T d1vpba_         241 PMNSSRLLSPMI-SALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLVKASGARYFDNEGIATERRSIFDKGVLNTYF  319 (439)
T ss_dssp             TTTHHHHHHHHH-HTTBHHHHHTTCCTTTTCTTSBCSCTTCCEEECTTCTTCTTCCSBCTTCBBCCCEEEEETTEECCCB
T ss_pred             cchhhhhHHHHH-hhhccchhhccchhhhhhhhhhhcCccceEEEeccCCCccccccccccccccccceeeeCcEEeccc
Confidence            999999999876 4699999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhcCCCCCccccccCcCCCCcCCceeEEEcCCCCChhHHHHcccCeEEEEecCCCccccccceEEEEeceEEEE
Q psy9403         590 QDIMNARLMNMSITGNARRESFAHIPIPRMTNTYMLNGKFHPEEIISSVKNGLYATNFSGGQVDITNGKFVFSASKAYII  669 (737)
Q Consensus       590 ~d~~tA~k~g~~~TGna~r~~~~~~P~~~~~Nl~i~~g~~s~eeli~~~~~Gl~V~~~~g~~~np~sGdFS~~~~~g~~I  669 (737)
                      ||+|||+|+|++||||            +|+|++++||+.+++|||+++++||||++++|+++||+||+||++++ ||||
T Consensus       320 ~~~~~A~~~g~~~tg~------------~~~n~~i~pg~~s~~eli~~~~~Gl~v~~~~g~~~n~~tG~fs~~~~-g~~i  386 (439)
T d1vpba_         320 IDTYNAKKMGVDPTIS------------GSSILVMETGDKNLDGLIAGVEKGILVTGFNGGNNNSSTGDFSYGIE-GFLI  386 (439)
T ss_dssp             CCHHHHHHHTSCCCCS------------SCSCEEECCCSCCHHHHHHTCSEEEEEEEEEEEEECTTTCEEEEEEE-EEEE
T ss_pred             cChhhHHhcCCCcccc------------cccccccCCCCCCHHHHhhcCCCEEEEEeCccCccCCCCceEEEEEe-EEEE
Confidence            9999999999999998            45799999999999999999999999999999889999999999996 9999


Q ss_pred             eCCeeeccccceEEEecHHHHHhhchhccCcceecCCCccccCCCcceecccccceEEEeceEEec
Q psy9403         670 KNGKITYPVKGATLIGHGPNILKKVSMIGNDMKLDPGVGVCGKDGQMVPVGVGQPTLKIDSITVGG  735 (737)
Q Consensus       670 enG~i~~pV~~~~isGn~~~~L~~I~~vg~d~~~~~~~~~cgk~~q~~~~~~~~Psi~v~~~~V~G  735 (737)
                      ||||+++||+++||+||++++|++|++||+|.+|.+              ++++|+++|++|+|+|
T Consensus       387 enGei~~~v~~~~i~gn~~~~l~~i~~ig~d~~~~~--------------~~~~P~~~v~~~~v~G  438 (439)
T d1vpba_         387 ENGKLTQPVSEMNVTGNLITLWNSLVATGNDPRLNS--------------SWRIPSLVFEGVDFSG  438 (439)
T ss_dssp             ETTEEEEEEEEEEEEEEHHHHHHTEEEECSCCCTTS--------------SEECCCEEEEEEEEEE
T ss_pred             ECCEEeeeEeeeEEEEcHHHHHhhhhhhcCceEecC--------------CCcCCcEEECcEEEec
Confidence            999999999999999999999999999999999864              3578999999999998
>d1vl4a_ d.283.1.1 (A:) PmbA-related protein TM0727 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1o17a2 c.27.1.1 (A:71-343) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1khda2 c.27.1.1 (A:81-344) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d2elca2 c.27.1.1 (A:66-329) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1brwa2 c.27.1.1 (A:71-330) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1uoua2 c.27.1.1 (A:101-373) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2tpta2 c.27.1.1 (A:71-335) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1uoua1 a.46.2.1 (A:33-100) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure