Psyllid ID: psy9762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccccccc
Coil and Loop (DISEMBL)
MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTqvstgqphegsgyasQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Flexible Loop (DISEMBL)
MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Low Complexity Region (SEG)
MERIQVLDQIEKDIITCLQSAGqallelskeksslkqaesqsHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Disordered region (IsUnstruct)
*****VLDQIEKDIITCLQSAGQA***********************TLSHVETKLTEQINYLTQV***************VLQMAWHRSA**QISDVIQSEADYFGV****
Disordered Region (DISOPRED)
*ERIQVLDQIEKDIITCLQSAGQALL****************HNFLKTLSHVETKLTEQINYLTQVSTGQPH*G**YASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Disordered Region (DISEMBL)
MERIQVLDQIEKDIITCLQSAGQALLELS************SHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Disordered Region (DISPRO)
MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFG**L**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQKVLQMAWHRSARQQISDVIQSEADYFGVDLAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9VVS4	176	Mediator of RNA polymeras	yes	N/A	0.937	0.596	0.663	1e-34
Q17NH9	132	Mediator of RNA polymeras	N/A	N/A	0.794	0.674	0.730	1e-32
Q9D8C6	117	Mediator of RNA polymeras	yes	N/A	0.892	0.854	0.509	3e-21
Q9P086	117	Mediator of RNA polymeras	yes	N/A	0.892	0.854	0.490	2e-20
Q32L03	117	Mediator of RNA polymeras	yes	N/A	0.892	0.854	0.480	8e-20
A3KNK7	114	Mediator of RNA polymeras	yes	N/A	0.794	0.780	0.483	4e-18
Q68EW7	118	Mediator of RNA polymeras	N/A	N/A	0.785	0.745	0.477	9e-18
Q6P255	118	Mediator of RNA polymeras	yes	N/A	0.785	0.745	0.465	6e-17
Q9BI74	188	Mediator of RNA polymeras	yes	N/A	0.687	0.409	0.346	3e-05
Q612X6	193	Mediator of RNA polymeras	N/A	N/A	0.687	0.398	0.320	4e-05

>sp|Q9VVS4|MED11_DROME Mediator of RNA polymerase II transcription subunit 11 OS=Drosophila melanogaster GN=MED11 PE=1 SV=1

 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/107 (66%), Positives = 89/107 (83%), Gaps = 2/107 (1%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           +++I  LD+IEK+II C+QSAGQAL EL KEKSS K AE+QS  FLK+LS VE+KL+EQI
Sbjct: 4   LDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLKSLSSVESKLSEQI 63

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQSEADY 105
           NYLTQVSTGQPHEGSGYAS KVLQMAWHR   AR ++ ++ +++A +
Sbjct: 64  NYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRVRELEETKAKH 110

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Drosophila melanogaster (taxid: 7227)

>sp|Q17NH9|MED11_AEDAE Mediator of RNA polymerase II transcription subunit 11 OS=Aedes aegypti GN=MED11 PE=3 SV=1

 Score =  138 bits (348), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 80/89 (89%)

Query: 1  MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
          +++IQVLD IEK+++ CLQSAGQALLELSKEK+S K  E+ ++ FLK+L+ VE+KL+EQI
Sbjct: 4  IDKIQVLDSIEKELLLCLQSAGQALLELSKEKTSQKATETHTNQFLKSLNIVESKLSEQI 63

Query: 61 NYLTQVSTGQPHEGSGYASQKVLQMAWHR 89
          NYLTQVSTGQPHEGSGYA+ KVLQMAWHR
Sbjct: 64 NYLTQVSTGQPHEGSGYAAAKVLQMAWHR 92

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q9D8C6|MED11_MOUSE Mediator of RNA polymerase II transcription subunit 11 OS=Mus musculus GN=Med11 PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/102 (50%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 2   ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
           ER++ L+ IE++I   LQ+AG A+LELSKEK++ +  + Q+  F  ++ HVE +L+ QI 
Sbjct: 9   ERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTTSVQHVEAELSAQIR 68

Query: 62  YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
           YLTQV+TGQPHEGS Y+S+K  QMA  R   AR +ISDV ++
Sbjct: 69  YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKISDVART 110

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q9P086|MED11_HUMAN Mediator of RNA polymerase II transcription subunit 11 OS=Homo sapiens GN=MED11 PE=1 SV=2

 Score = 97.8 bits (242), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/102 (49%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 2   ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
           ER++ L+ IE++I   LQ+AG  +LELSKEK++ +  + Q+  F  ++ HVE +L+ QI 
Sbjct: 9   ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query: 62  YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
           YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++SDV ++
Sbjct: 69  YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

>sp|Q32L03|MED11_BOVIN Mediator of RNA polymerase II transcription subunit 11 OS=Bos taurus GN=MED11 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 73/102 (71%), Gaps = 2/102 (1%)

Query: 2   ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
           ER++ L+ IE++I   LQ+AG  +LELSKEK++ +  + Q+  F  ++ HVE +L+ QI 
Sbjct: 9   ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query: 62  YLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQS 101
           YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++S+V ++
Sbjct: 69  YLTQVATGQPHEGSSYSSRKDCQMALKRLDYARLKLSEVART 110

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Bos taurus (taxid: 9913)

>sp|A3KNK7|MED11_DANRE Mediator of RNA polymerase II transcription subunit 11 OS=Danio rerio GN=med11 PE=2 SV=2

 Score = 90.1 bits (222), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 66/89 (74%)

Query: 2  ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
          +R++ L+ +EK+I   LQSAG  +LELSKEK++    + Q + F  +++ VE++L+ QI 
Sbjct: 4  DRLRALEDVEKEIALVLQSAGTIVLELSKEKANASLLDRQLNQFQTSINRVESELSSQIR 63

Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS 90
          YLTQV+TGQPHEGS Y+++K  QMA +R+
Sbjct: 64 YLTQVATGQPHEGSTYSARKDCQMALNRA 92

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Danio rerio (taxid: 7955)

>sp|Q68EW7|MED11_XENLA Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus laevis GN=med11 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 64/88 (72%)

Query: 2  ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
          ER++ L++IE++I   L +AG A+LELSKEK + +  + Q+  F  ++  VE++L+ QI 
Sbjct: 9  ERLRALEEIEREIAAILLNAGNAILELSKEKPNERMLDKQAAQFTASVQRVESELSGQIR 68

Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHR 89
          YLTQV+TGQPHEGS Y+++K   MA +R
Sbjct: 69 YLTQVATGQPHEGSSYSARKDGTMALNR 96

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q6P255|MED11_XENTR Mediator of RNA polymerase II transcription subunit 11 OS=Xenopus tropicalis GN=med11 PE=3 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 63/88 (71%)

Query: 2  ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQIN 61
          ER++ L++IE++I   L +AG  +LELSKEK + +  + Q+  F  ++  VE++L+ QI 
Sbjct: 9  ERLRALEEIEREIAAILLNAGNVILELSKEKPNERVLDKQATQFTASVQRVESELSGQIR 68

Query: 62 YLTQVSTGQPHEGSGYASQKVLQMAWHR 89
          YLTQV+TGQPHEGS Y+++K   MA +R
Sbjct: 69 YLTQVATGQPHEGSSYSARKDGTMALNR 96

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q9BI74|MED11_CAEEL Mediator of RNA polymerase II transcription subunit 11 OS=Caenorhabditis elegans GN=mdt-11 PE=3 SV=1

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 2  ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLK-QAESQSHNFLKTLSHVETKLTEQI 60
          +RIQ +   EK I   ++ A + + +L KEK   K + E  ++NF K ++ VE +L+ Q+
Sbjct: 12 DRIQAIVTTEKSIDEMMKCAREIIQDLGKEKQIGKNKMEDNANNFKKLITQVENELSAQM 71

Query: 61 NYLTQVSTGQPHEGSGYA 78
           YL+ V  G  H+GS + 
Sbjct: 72 QYLSHVCVGSSHQGSTFG 89

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis elegans (taxid: 6239)

>sp|Q612X6|MED11_CAEBR Mediator of RNA polymerase II transcription subunit 11 OS=Caenorhabditis briggsae GN=mdt-11 PE=3 SV=2

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 46/78 (58%), Gaps = 1/78 (1%)

Query: 2  ERIQVLDQIEKDIITCLQSAGQALLELSKEKS-SLKQAESQSHNFLKTLSHVETKLTEQI 60
          +RIQ +   EK+I   ++ A + + +L KEK  S  + +  +++F K ++ VE +L+ Q+
Sbjct: 12 DRIQAIVATEKNIDDMMKCAREIMQDLGKEKQISKNKMDDNANSFKKLITQVENELSAQM 71

Query: 61 NYLTQVSTGQPHEGSGYA 78
           YL+ V  G  H+GS + 
Sbjct: 72 QYLSHVCVGSSHQGSTFG 89

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Caenorhabditis briggsae (taxid: 6238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
242247315	126	mediator of RNA polymerase II transcript	0.946	0.841	0.75	2e-38
383864783	112	PREDICTED: mediator of RNA polymerase II	0.875	0.875	0.78	3e-38
66552919	112	PREDICTED: mediator of RNA polymerase II	0.875	0.875	0.78	3e-38
350420514	112	PREDICTED: mediator of RNA polymerase II	0.875	0.875	0.77	5e-38
307190360	112	Mediator of RNA polymerase II transcript	0.875	0.875	0.78	6e-38
242007810	133	conserved hypothetical protein [Pediculu	0.875	0.736	0.79	7e-38
332023155	112	Mediator of RNA polymerase II transcript	0.875	0.875	0.77	8e-38
322789046	112	hypothetical protein SINV_12601 [Solenop	0.875	0.875	0.77	1e-37
91083293	132	PREDICTED: similar to Mediator complex s	0.875	0.742	0.78	2e-37
332372664	152	unknown [Dendroctonus ponderosae]	0.946	0.697	0.722	3e-37

>gi|242247315|ref|NP_001156198.1| mediator of RNA polymerase II transcription subunit 11 [Acyrthosiphon pisum] gi|239789770|dbj|BAH71487.1| ACYPI005820 [Acyrthosiphon pisum]

 Score =  162 bits (410), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 81/108 (75%), Positives = 93/108 (86%), Gaps = 2/108 (1%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ L+ IEKDIITCLQSAGQALLELSKEKSSLKQ E+QSH FLK+L +VE+KLTEQI
Sbjct: 5   MERIQALELIEKDIITCLQSAGQALLELSKEKSSLKQVENQSHQFLKSLGNVESKLTEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQSEADYF 106
           NYLTQVSTGQP+E SGYASQKVLQMAWHR   AR ++ ++ +S+  Y 
Sbjct: 65  NYLTQVSTGQPYENSGYASQKVLQMAWHRLEHARSRVKELERSKNKYL 112

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864783|ref|XP_003707857.1| PREDICTED: mediator of RNA polymerase II transcription subunit 11-like [Megachile rotundata]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 90/100 (90%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+L+ IEKDII CLQSAGQA +ELSKEKSSLKQAE+Q+  FLKTL HVE+KL+EQI
Sbjct: 5   MERIQILETIEKDIIVCLQSAGQAFVELSKEKSSLKQAEAQTQQFLKTLGHVESKLSEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66552919|ref|XP_625097.1| PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Apis mellifera] gi|380028617|ref|XP_003697991.1| PREDICTED: mediator of RNA polymerase II transcription subunit 11-like [Apis florea]

 Score =  162 bits (409), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 90/100 (90%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+L+ IEKDII CLQSAGQA +ELSKEKSSLKQAE+Q+  FLKTL HVE+KL+EQI
Sbjct: 5   MERIQILETIEKDIIVCLQSAGQAFVELSKEKSSLKQAEAQTQQFLKTLGHVESKLSEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420514|ref|XP_003492533.1| PREDICTED: mediator of RNA polymerase II transcription subunit 11-like [Bombus impatiens]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 90/100 (90%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+L+ IEKDII CLQSAGQA +ELSKEKSS+KQAE+Q+  FLKTL HVE+KL+EQI
Sbjct: 5   MERIQILETIEKDIIVCLQSAGQAFVELSKEKSSMKQAEAQTQQFLKTLGHVESKLSEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190360|gb|EFN74419.1| Mediator of RNA polymerase II transcription subunit 11 [Camponotus floridanus]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 90/100 (90%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+L+ IEKDII CLQSAGQA +ELSKEKSSLKQAESQ+H FLKTL  +E+KL+EQI
Sbjct: 5   MERIQILETIEKDIIICLQSAGQACMELSKEKSSLKQAESQTHQFLKTLGQLESKLSEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007810|ref|XP_002424714.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508207|gb|EEB11976.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 79/100 (79%), Positives = 91/100 (91%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           +ERIQVLD IEKDIITCLQSAGQAL+ELSK+KSSLK +E Q+H FLKTL+ VE+KLTEQI
Sbjct: 5   VERIQVLDAIEKDIITCLQSAGQALIELSKDKSSLKLSEGQTHQFLKTLNLVESKLTEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332023155|gb|EGI63411.1| Mediator of RNA polymerase II transcription subunit 11 [Acromyrmex echinatior]

 Score =  160 bits (406), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 90/100 (90%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+L+ IEKDI+ CLQSAGQA +ELSKEKSSLKQAESQ+H FLKTL  +E+KL+EQI
Sbjct: 5   MERIQILETIEKDIVVCLQSAGQACMELSKEKSSLKQAESQTHQFLKTLGQLESKLSEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789046|gb|EFZ14504.1| hypothetical protein SINV_12601 [Solenopsis invicta]

 Score =  159 bits (403), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 89/100 (89%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+L+ IEKDII CLQSAGQA +EL KEKSSLKQAESQ+H FLKTL  +E+KL+EQI
Sbjct: 5   MERIQILETIEKDIIVCLQSAGQACMELGKEKSSLKQAESQTHQFLKTLGQLESKLSEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083293|ref|XP_974541.1| PREDICTED: similar to Mediator complex subunit 11 CG6884-PA [Tribolium castaneum] gi|270007731|gb|EFA04179.1| hypothetical protein TcasGA2_TC014428 [Tribolium castaneum]

 Score =  159 bits (401), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 78/100 (78%), Positives = 87/100 (87%), Gaps = 2/100 (2%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQVLD IEKDIITCL SAGQ  +ELSKEKSSLKQAE+ +  FLKTL  VE+KLTEQI
Sbjct: 5   MERIQVLDSIEKDIITCLHSAGQVFVELSKEKSSLKQAENHTQTFLKTLGAVESKLTEQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDV 98
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNEL 104

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332372664|gb|AEE61474.1| unknown [Dendroctonus ponderosae]

 Score =  158 bits (400), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 78/108 (72%), Positives = 90/108 (83%), Gaps = 2/108 (1%)

Query: 1   MERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQI 60
           MERIQ+LD IEKDIITCL SAGQ  LELSKEKSSLKQAE+ +  FLKTL  VE KLT+QI
Sbjct: 5   MERIQLLDSIEKDIITCLNSAGQVFLELSKEKSSLKQAENHTQTFLKTLGAVENKLTDQI 64

Query: 61  NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQSEADYF 106
           NYLTQVSTGQPHEGSGYASQKVLQMAWHR   AR +++++ + +  +F
Sbjct: 65  NYLTQVSTGQPHEGSGYASQKVLQMAWHRLEHARSRVNELDKIKLKHF 112

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
FB|FBgn0036811	176	MED11 "Mediator complex subuni	0.937	0.596	0.523	2e-24
MGI|MGI:1913422	117	Med11 "mediator of RNA polymer	0.892	0.854	0.421	1.8e-14
UNIPROTKB|F1Q215	117	MED11 "Uncharacterized protein	0.892	0.854	0.411	3.8e-14
UNIPROTKB|Q9P086	117	MED11 "Mediator of RNA polymer	0.892	0.854	0.411	3.8e-14
UNIPROTKB|F1MG57	117	MED11 "Mediator of RNA polymer	0.892	0.854	0.401	1e-13
UNIPROTKB|Q32L03	117	MED11 "Mediator of RNA polymer	0.892	0.854	0.401	1e-13
UNIPROTKB|F1RFT8	117	MED11 "Uncharacterized protein	0.892	0.854	0.392	2.1e-13
ZFIN|ZDB-GENE-091207-2	147	med11 "mediator complex subuni	0.866	0.659	0.373	2.1e-13
RGD|1563202	135	Med11 "mediator complex subuni	0.785	0.651	0.420	5.6e-13
UNIPROTKB|I3L3E8	85	MED11 "Mediator of RNA polymer	0.669	0.882	0.32	1.1e-05

FB|FBgn0036811 MED11 "Mediator complex subunit 11" [Drosophila melanogaster (taxid:7227)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 56/107 (52%), Positives = 73/107 (68%)

Query:     1 MERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQI 60
             +++I  LD+IEK+II C+QSAG                      FLK+LS VE+KL+EQI
Sbjct:     4 LDKIHALDEIEKEIILCMQSAGQALQELGKEKSSQKNAETQSQQFLKSLSSVESKLSEQI 63

Query:    61 NYLTQVSTGQPHEGSGYASQKVLQMAWHR--SARQQISDVIQSEADY 105
             NYLTQVSTGQPHEGSGYAS KVLQMAWHR   AR ++ ++ +++A +
Sbjct:    64 NYLTQVSTGQPHEGSGYASAKVLQMAWHRIQHARSRVRELEETKAKH 110

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA;IC

GO:0016592 "mediator complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0007517 "muscle organ development" evidence=IMP

GO:0048813 "dendrite morphogenesis" evidence=IMP

MGI|MGI:1913422 Med11 "mediator of RNA polymerase II transcription, subunit 11 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 43/102 (42%), Positives = 59/102 (57%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTTSVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
             YLTQV+TGQPHEGS Y+S+K  QMA  R   AR +ISDV ++
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKISDVART 110

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016592 "mediator complex" evidence=ISA

UNIPROTKB|F1Q215 MED11 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/102 (41%), Positives = 59/102 (57%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
             YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++SDV ++
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9P086 MED11 "Mediator of RNA polymerase II transcription subunit 11" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/102 (41%), Positives = 59/102 (57%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
             YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++SDV ++
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSDVART 110

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1MG57 MED11 "Mediator of RNA polymerase II transcription subunit 11" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 41/102 (40%), Positives = 59/102 (57%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
             YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++S+V ++
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLSEVART 110

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q32L03 MED11 "Mediator of RNA polymerase II transcription subunit 11" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 41/102 (40%), Positives = 59/102 (57%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
             YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++S+V ++
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKRLDYARLKLSEVART 110

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|F1RFT8 MED11 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 40/102 (39%), Positives = 59/102 (57%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDVIQS 101
             YLTQV+TGQPHEGS Y+S+K  QMA  R   AR ++++V ++
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKRVDYARLKLNEVART 110

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

ZFIN|ZDB-GENE-091207-2 med11 "mediator complex subunit 11" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
 Identities = 37/99 (37%), Positives = 60/99 (60%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             +R++ L+ +EK+I   LQSAG                    + F  +++ VE++L+ QI 
Sbjct:    37 DRLRALEDVEKEIALVLQSAGTIVLELSKEKANASLLDRQLNQFQTSINRVESELSSQIR 96

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHRS--ARQQISDV 98
             YLTQV+TGQPHEGS Y+++K  QMA +R+  AR ++ ++
Sbjct:    97 YLTQVATGQPHEGSTYSARKDCQMALNRAEYARVKLGEL 135

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1563202 Med11 "mediator complex subunit 11" [Rattus norvegicus (taxid:10116)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 37/88 (42%), Positives = 50/88 (56%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTAILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSGYASQKVLQMAWHR 89
             YLTQV+TGQPHEGS Y+S+K  QMA  R
Sbjct:    69 YLTQVATGQPHEGSSYSSRKDCQMALKR 96

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA;ISO

UNIPROTKB|I3L3E8 MED11 "Mediator of RNA polymerase II transcription subunit 11" [Homo sapiens (taxid:9606)]

 Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 24/75 (32%), Positives = 36/75 (48%)

Query:     2 ERIQVLDQIEKDIITCLQSAGXXXXXXXXXXXXXXXXXXXXHNFLKTLSHVETKLTEQIN 61
             ER++ L+ IE++I   LQ+AG                      F  ++ HVE +L+ QI 
Sbjct:     9 ERLRALEDIEREIGAILQNAGTVILELSKEKTNERLLDRQAAAFTASVQHVEAELSAQIR 68

Query:    62 YLTQVSTGQPHEGSG 76
             YLTQ+  G  +  SG
Sbjct:    69 YLTQLPDGLTNSNSG 83

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q17NH9	MED11_AEDAE	No assigned EC number	0.7303	0.7946	0.6742	N/A	N/A
A3KNK7	MED11_DANRE	No assigned EC number	0.4831	0.7946	0.7807	yes	N/A
Q32L03	MED11_BOVIN	No assigned EC number	0.4803	0.8928	0.8547	yes	N/A
Q9P086	MED11_HUMAN	No assigned EC number	0.4901	0.8928	0.8547	yes	N/A
Q9D8C6	MED11_MOUSE	No assigned EC number	0.5098	0.8928	0.8547	yes	N/A
Q9VVS4	MED11_DROME	No assigned EC number	0.6635	0.9375	0.5965	yes	N/A
Q6P255	MED11_XENTR	No assigned EC number	0.4659	0.7857	0.7457	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	112
pfam10280	113	pfam10280, Med11, Mediator complex protein	2e-26

>gnl|CDD|220673 pfam10280, Med11, Mediator complex protein

 Score = 94.3 bits (235), Expect = 2e-26
 Identities = 48/91 (52%), Positives = 63/91 (69%), Gaps = 3/91 (3%)

Query: 2  ERIQVLDQIEKDIITCLQSAGQALLELSKEKS---SLKQAESQSHNFLKTLSHVETKLTE 58
          ER+Q L++I+K I++ LQSAGQ + ELSKEKS   S +Q ES +  F KTLS VET+L +
Sbjct: 3  ERLQSLNEIDKKIVSLLQSAGQVIEELSKEKSGESSKEQFESHTKEFYKTLSSVETELRK 62

Query: 59 QINYLTQVSTGQPHEGSGYASQKVLQMAWHR 89
          QI YL +V  GQPHEGSGY +  + Q+    
Sbjct: 63 QIKYLDEVIGGQPHEGSGYGALPINQLNQKA 93

Mediator is a large, modular protein complex that is conserved from yeast to human and conveys regulatory signals from DNA-binding transcription factors to RNA polymerase II. Not only are the polypeptides conserved but the structural organisation is also largely conserved. One or two subunits are either fungal or vertebral specific but Med11 is one of the subunits that is conserved from fungi to humans. Med11 appears to be necessary for the full and successful assembly of the core head sub-region. Length = 113

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG4057|consensus	180		100.0
PF10280	117	Med11: Mediator complex protein ; InterPro: IPR019	99.97

>KOG4057|consensus

Probab=100.00  E-value=6.6e-44  Score=271.05  Aligned_cols=103  Identities=48%  Similarity=0.644  Sum_probs=101.2

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCchhHHH
Q psy9762           2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEGSGYASQK   81 (112)
Q Consensus         2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEgS~Y~a~k   81 (112)
                      +||++|++|||+|..||||||++|.||+|||++.+.+|+++++|+++|.+||++||+||+||||||||+|||||+||++|
T Consensus         9 dri~Al~~iEkeI~~~mq~Ag~iiqeLgKEK~~~kn~e~qa~~F~ksit~VE~eLSaQi~YLtqV~tGqpHeGS~y~s~k   88 (180)
T KOG4057|consen    9 DRIQALVTIEKEIDEMMQCAGEIIQELGKEKQIGKNMEDQANNFKKSITQVENELSAQIQYLTQVCTGQPHEGSTYGSLK   88 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH--HHHHHHHHHHHHHh
Q psy9762          82 VLQMAWHRS--ARQQISDVIQSEAD  104 (112)
Q Consensus        82 d~emA~~rv--~~~~l~~l~~~~~~  104 (112)
                      ||+|||+||  +|++|.++.||++.
T Consensus        89 ~~qmA~~r~~~ars~l~~i~rt~~~  113 (180)
T KOG4057|consen   89 NSQMAQSRLSSARSELFQIVRTLDP  113 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999  99999999999654

>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=99.97  E-value=6.1e-32  Score=193.36  Aligned_cols=105  Identities=41%  Similarity=0.612  Sum_probs=81.1

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCcc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC
Q psy9762           2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKS-------SLKQAESQSHNFLKTLSHVETKLTEQINYLTQVSTGQPHEG   74 (112)
Q Consensus         2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek~-------s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~tg~phEg   74 (112)
                      +||++|++|||+|+++|++||+||.+|||+++       ++++|+++|++|+++|+.|+..|+.||+||+++++++||+|
T Consensus         3 eRL~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~qI~~L~e~~~~~~~~~   82 (117)
T PF10280_consen    3 ERLQQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELRRQIKYLEEVSIIQPHEG   82 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBTT-----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            79999999999999999999999999999997       89999999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHHHHHH--HHHHHHHHHHHHHhhh
Q psy9762          75 SGYASQKVLQMAWHRS--ARQQISDVIQSEADYF  106 (112)
Q Consensus        75 S~Y~a~kd~emA~~rv--~~~~l~~l~~~~~~~~  106 (112)
                      |+||+.++++|+++++  .++++.++.+++.++.
T Consensus        83 s~~~~l~v~~ln~~~~~~~~~~l~el~~~~~~~l  116 (117)
T PF10280_consen   83 SSYGALDVGWLNSKKTEVGRDKLAELWATLREFL  116 (117)
T ss_dssp             ---TBS---------------GGGTTTHHHHHHH
T ss_pred             ccccccchHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999  9999999999988753

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3r84_A	86	Mediator of RNA polymerase II transcription subun;	99.4
4gwp_A	115	Mediator of RNA polymerase II transcription subun;	98.35
3rj1_A	131	Mediator of RNA polymerase II transcription subun;	98.11
4h63_K	112	Mediator of RNA polymerase II transcription subun;	97.31

>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}

Probab=99.40  E-value=8e-13  Score=90.94  Aligned_cols=64  Identities=28%  Similarity=0.416  Sum_probs=60.7

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCcc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762           2 ERIQVLDQIEKDIITCLQSAGQALLELSKEKS----SLKQAESQSHNFLKTLSHVETKLTEQINYLTQ   65 (112)
Q Consensus         2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek~----s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq   65 (112)
                      |||++|++|+++|+++|++|++++..|+++|.    .+.+|+.++.+|.++|..|...|+.||++|--
T Consensus         5 ERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~LdE   72 (86)
T 3r84_A            5 ERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE   72 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999774    68999999999999999999999999999854

>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A

Probab=98.35  E-value=2e-06  Score=61.82  Aligned_cols=64  Identities=30%  Similarity=0.429  Sum_probs=59.1

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762           2 ERIQVLDQIEKDIITCLQSAGQALLELSKEK----SSLKQAESQSHNFLKTLSHVETKLTEQINYLTQ   65 (112)
Q Consensus         2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek----~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq   65 (112)
                      |||..|++|+-+|++++++|++++.-+|..|    ..+.+|+.|+.+|...|..|=..|+.+|+.|-.
T Consensus         8 ERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~lDe   75 (115)
T 4gwp_A            8 ERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE   75 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            7999999999999999999999999988644    458899999999999999999999999999865

>3rj1_A Mediator of RNA polymerase II transcription subun; RNA polymeras II, POL II, head module, head, regulator, helical bundle; 4.30A {Saccharomyces cerevisiae}

Probab=98.11  E-value=5e-08  Score=71.52  Aligned_cols=64  Identities=30%  Similarity=0.429  Sum_probs=59.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHhhcCCc----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy9762           2 ERIQVLDQIEKDIITCLQSAGQALLELSKEK----SSLKQAESQSHNFLKTLSHVETKLTEQINYLTQ   65 (112)
Q Consensus         2 ~RL~~L~~iEK~I~~~lq~Ag~~i~ELskek----~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsq   65 (112)
                      |||+.|++|+.+|+++|++|++++.-|+..|    ..+.+|+.|+.+|...|..|-..|+.||.-|--
T Consensus        24 ERL~sL~~ID~~ivsLL~~aS~~~~tls~~k~g~~~~K~qF~~~t~~fy~~L~~v~v~LRkEIk~LDE   91 (131)
T 3rj1_A           24 ERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQLLDE   91 (131)
T ss_dssp             HHTTTTTTTTTTTHHHHSTTTHHHHHHHHSCCSTTTTHHHHHHHHHHHHGGGTTTTTTTTTTTSSTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7999999999999999999999999999865    268899999999999999999999999987654

>4h63_K Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; 3.40A {Schizosaccharomyces pombe}

Probab=97.31  E-value=0.0012  Score=46.71  Aligned_cols=65  Identities=26%  Similarity=0.348  Sum_probs=57.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Q psy9762           3 RIQVLDQIEKDIITCLQSAGQALLELSKEKSSLKQAESQSHNFLKTLSHVETKLTEQINYLTQVST   68 (112)
Q Consensus         3 RL~~L~~iEK~I~~~lq~Ag~~i~ELskek~s~~~~e~~~~~F~~sl~~VE~eLs~qI~yLsqV~t   68 (112)
                      -++-+-+||++|-.++.+||.||+-.- +.-|-+.|..++.+|+.++.-|-+.|+.|.--|..|-+
T Consensus        20 ~~~~I~EiE~rIPDILsSA~~CIEAI~-~~~SiE~F~~~sr~F~~TVEFiSTGL~RQ~L~LEK~E~   84 (112)
T 4h63_K           20 QVQNILELEAKIPDILSSAGKCIEAIQ-LNNSLEDFRKYSKEFLETVEFISTGLRRQALELEKAEV   84 (112)
T ss_dssp             HHHHHHHHHHHSTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHhHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhccC
Confidence            467788999999999999999998764 45577889999999999999999999999998887653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00