Psyllid ID: psy9968

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY
Secondary Structure (PSIPRED)
cEEEEEcccccccccEEEEEEEEcccccccEEEEccccEEEEcccccccccccHHHHEEEHHHHHccccccccccccEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEcccccccccEEEEEEEEccccccEEEEcccccEEEEEccccccccccccEEEEccccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEEEccccccccccccc
Coil and Loop (DISEMBL)
mqvhatdvdppsnggtiqyriikapgerakfsidkETGIVKTLYaldrddperekeIYITTDIRvqaldrddperEKEIYITVIaedngtpqlsdactmkitvedindnepmfdrvqy
Flexible Loop (DISEMBL)
mqvhatdvdppsnggtiqYRIIkapgerakfsidketgivktlyaldrddperekeiyittdirvqaldrddpeREKEIYItviaedngtpqlSDACTMKItvedindnepmfdrvqy
Low Complexity Region (SEG)
MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY
Disordered region (IsUnstruct)
****************IQYRIIKAPGERAKFSIDKETGIVKTLYALDRD****EKEIYITTDIRVQALD*******KEIYITVIAEDNGTPQLSDACTMKITV***************
Disordered Region (DISOPRED)
MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD****
Disordered Region (DISEMBL)
**********PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY
Disordered Region (DISPRO)
MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q24298	1507	DE-cadherin OS=Drosophila	yes	N/A	0.788	0.061	0.372	1e-15
O15943	3097	Neural-cadherin OS=Drosop	no	N/A	0.796	0.030	0.336	2e-09
Q14517	4588	Protocadherin Fat 1 OS=Ho	yes	N/A	0.771	0.019	0.364	3e-09
O88278	3313	Cadherin EGF LAG seven-pa	yes	N/A	0.779	0.027	0.308	8e-09
Q91ZI0	3301	Cadherin EGF LAG seven-pa	no	N/A	0.779	0.027	0.308	1e-08
Q9BYE9	1310	Cadherin-related family m	no	N/A	0.813	0.073	0.313	4e-08
Q9NYQ7	3312	Cadherin EGF LAG seven-pa	no	N/A	0.779	0.027	0.3	6e-08
Q9BZA8	1340	Protocadherin-11 Y-linked	no	N/A	0.762	0.067	0.279	4e-07
Q8BNA6	4555	Protocadherin Fat 3 OS=Mu	no	N/A	0.771	0.019	0.330	4e-07
Q24292	3503	Protein dachsous OS=Droso	no	N/A	0.779	0.026	0.310	9e-07

>sp|Q24298|CADE_DROME DE-cadherin OS=Drosophila melanogaster GN=shg PE=1 SV=2

 Score = 82.0 bits (201), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 25/118 (21%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + V A D DP      I+Y I+++P ER KF I+  TG++ T +  DRD+P  E      
Sbjct: 108 LTVEAVDPDPDQ---VIRYSIVQSPFERPKFFINPSTGVIFTTHTFDRDEPIHE------ 158

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                           K +++TV A DNG P L D CT  +T+EDINDN P F++ +Y
Sbjct: 159 ----------------KFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKARY 200

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. N-cadherin may be involved in neuronal recognition mechanism.
Drosophila melanogaster (taxid: 7227)

>sp|O15943|CADN_DROME Neural-cadherin OS=Drosophila melanogaster GN=CadN PE=1 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 25/119 (21%)

Query: 1    MQVHATDVDPPSNGGTIQYRIIKAPGERA-KFSIDKETGIVKTLYALDRDDPEREKEIYI 59
            ++V ATD D   NG  ++Y I++ P ++  KF++D+ETG V T    DR+          
Sbjct: 989  IKVVATDEDKGVNG-QVKYSIVQQPNQKGTKFTVDEETGEVSTNKVFDREG--------- 1038

Query: 60   TTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                       DD    K + +TV A D G P L   C+  + + D+NDN P+FDR +Y
Sbjct: 1039 -----------DD---GKFVSVTVKATDQGDPSLEGVCSFTVEITDVNDNPPLFDRQKY 1083

Cadherins are calcium dependent cell adhesion proteins. They preferentially interact with themselves in a homophilic manner in connecting cells; cadherins may thus contribute to the sorting of heterogeneous cell types. May associate with arm neural isoform and participate in the transmission of developmental information.

Drosophila melanogaster (taxid: 7227)

>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1 PE=1 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 43/118 (36%), Positives = 53/118 (44%), Gaps = 27/118 (22%)

Query: 1    MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            +QV+A   D  +N   I Y II    E  KFSID +TG V  +  LD             
Sbjct: 3250 LQVYAASRDIEANA-EITYSIISG-NEHGKFSIDSKTGAVFIIENLDY------------ 3295

Query: 61   TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                         E   E Y+TV A D GTP LSD  T+ + V DINDN P+F +  Y
Sbjct: 3296 -------------ESSHEYYLTVEATDGGTPSLSDVATVNVNVTDINDNTPVFSQDTY 3340

Plays an essential role for cellular polarization, directed cell migration and modulating cell-cell contact.

Homo sapiens (taxid: 9606)

>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3 OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 28/120 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
           ++V A D DP    G + Y +      R+   FSID ++G+++T  ALDR+  ER     
Sbjct: 336 LRVVAQDPDP-GEAGRLVYSLAALMNSRSLELFSIDPQSGLIRTAAALDRESMERH---- 390

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                                Y+ V A+D+G+P+LS    + +TV D ND+ P+F++ QY
Sbjct: 391 ---------------------YLRVTAQDHGSPRLSATTMVAVTVADRNDHAPVFEQAQY 429

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Rattus norvegicus (taxid: 10116)

>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3 OS=Mus musculus GN=Celsr3 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/120 (30%), Positives = 59/120 (49%), Gaps = 28/120 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
           ++V A D DP    G + Y +      R+   FSID ++G+++T  ALDR+  ER     
Sbjct: 336 LRVVAQDPDP-GEAGRLIYSLAALMNSRSLELFSIDPQSGLIRTAAALDRESMERH---- 390

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                                Y+ V A+D+G+P+LS    + +TV D ND+ P+F++ QY
Sbjct: 391 ---------------------YLRVTAQDHGSPRLSATTMVAVTVADRNDHAPVFEQAQY 429

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Mus musculus (taxid: 10090)

>sp|Q9BYE9|CDHR2_HUMAN Cadherin-related family member 2 OS=Homo sapiens GN=CDHR2 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +Q H  D +P +N   + + ++  P     FS+D +TG+++ L  LDR+           
Sbjct: 605 IQAHDND-EPGTNNSRLLFNLLPGPYSH-NFSLDPDTGLLRNLGPLDREAI--------- 653

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                      DP  E  I +TV+  D G P L     + ITVEDINDN P+F++  Y
Sbjct: 654 -----------DPALEGRIVLTVLVSDCGEPVLGTKVNVTITVEDINDNLPIFNQSSY 700

Role in contact inhibition at the lateral surface of epithelial cells.

Homo sapiens (taxid: 9606)

>sp|Q9NYQ7|CELR3_HUMAN Cadherin EGF LAG seven-pass G-type receptor 3 OS=Homo sapiens GN=CELSR3 PE=1 SV=2

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/120 (30%), Positives = 58/120 (48%), Gaps = 28/120 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
           ++V A D D     G + Y +      R+   FSID ++G+++T  ALDR+  ER     
Sbjct: 345 LRVVAQDPDA-GEAGRLVYSLAALMNSRSLELFSIDPQSGLIRTAAALDRESMERH---- 399

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                                Y+ V A+D+G+P+LS    + +TV D ND+ P+F++ QY
Sbjct: 400 ---------------------YLRVTAQDHGSPRLSATTMVAVTVADRNDHSPVFEQAQY 438

Receptor that may have an important role in cell/cell signaling during nervous system formation.

Homo sapiens (taxid: 9606)

>sp|Q9BZA8|PC11Y_HUMAN Protocadherin-11 Y-linked OS=Homo sapiens GN=PCDH11Y PE=1 SV=1

 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 55/118 (46%), Gaps = 28/118 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           M+V ATD D   +G   +   +  P    +FS+D+ TG++  +  LDR            
Sbjct: 518 MKVSATDAD---SGPNAEINYLLGPDAPPEFSLDRRTGMLTVVKKLDR------------ 562

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                        E+E +   T++A+DNG P L+   T+ +++ D NDN P+F   +Y
Sbjct: 563 -------------EKEDKYLFTILAKDNGVPPLTSNVTVFVSIIDQNDNSPVFTHNEY 607

Potential calcium-dependent cell-adhesion protein.

Homo sapiens (taxid: 9606)

>sp|Q8BNA6|FAT3_MOUSE Protocadherin Fat 3 OS=Mus musculus GN=Fat3 PE=1 SV=2

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 55/118 (46%), Gaps = 27/118 (22%)

Query: 1    MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            + V AT  D  +N   I Y +I++  E+ KFSI+ +TG +  L ALD +   R       
Sbjct: 3255 LSVFATSKDIGTNA-EITY-LIRSGNEQGKFSINPKTGGISVLEALDYETCRR------- 3305

Query: 61   TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                               Y+ V A+D GTP LS A T+ I + D+NDN P F +  Y
Sbjct: 3306 ------------------FYLVVEAKDGGTPALSTAATVSIDLTDVNDNPPRFSQDVY 3345

May play a role in the interactions between neurites derived from specific subsets of neurons during development.

Mus musculus (taxid: 10090)

>sp|Q24292|DS_DROME Protein dachsous OS=Drosophila melanogaster GN=ds PE=1 SV=3

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 27/119 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK-FSIDKETGIVKTLYALDRDDPEREKEIYI 59
           +QV A D D   N   + Y + + P   A+ F ID +TG++ T   +D            
Sbjct: 471 LQVLAHDRDEGLNSA-LTYSLAETPETHAQWFQIDPQTGLITTRSHID------------ 517

Query: 60  TTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                         E E    +TV+A D G P LS   T+ +T+ D+NDNEP+FD+  Y
Sbjct: 518 -------------CETEPVPQLTVVARDGGVPPLSSTATVLVTIHDVNDNEPIFDQSFY 563

Involved in morphogenesis. May also be involved in cell adhesion.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
383860977	1584	PREDICTED: DE-cadherin-like [Megachile r	0.813	0.060	0.5	2e-26
328783387	1576	PREDICTED: DE-cadherin-like [Apis mellif	0.813	0.060	0.491	5e-26
380016155	1489	PREDICTED: LOW QUALITY PROTEIN: DE-cadhe	0.813	0.064	0.491	5e-26
350404065	1575	PREDICTED: DE-cadherin-like [Bombus impa	0.813	0.060	0.474	1e-24
340725620	1575	PREDICTED: DE-cadherin-like [Bombus terr	0.813	0.060	0.474	1e-24
332024902	1525	DE-cadherin [Acromyrmex echinatior]	0.813	0.062	0.474	9e-24
345493189	1504	PREDICTED: DE-cadherin-like [Nasonia vit	0.813	0.063	0.483	2e-23
242019060	1478	Cadherin-23 precursor, putative [Pedicul	0.813	0.064	0.449	8e-23
332024905	1591	DE-cadherin [Acromyrmex echinatior]	0.813	0.060	0.440	1e-21
61162121	1481	Gb1-cadherin [Gryllus bimaculatus]	0.813	0.064	0.457	9e-21

>gi|383860977|ref|XP_003705963.1| PREDICTED: DE-cadherin-like [Megachile rotundata]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/118 (50%), Positives = 74/118 (62%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +QVHA D D P +GGTI Y  + APGE+ KF ID  TG+++T                  
Sbjct: 98  IQVHAEDRDHPDDGGTITYSFVTAPGEKLKFEIDNRTGLIRT------------------ 139

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q LDRD+P REKE Y+TV+A DNG PQL D CT K+T+ED+NDNEP+FD+V Y
Sbjct: 140 ----TQGLDRDEPAREKEAYLTVLATDNGRPQLDDVCTFKVTIEDVNDNEPVFDKVAY 193

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783387|ref|XP_394063.4| PREDICTED: DE-cadherin-like [Apis mellifera]

 Score =  121 bits (304), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 73/118 (61%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +QVHA D D P NGGTI Y  + APGE+ KF I+  TG+++T                  
Sbjct: 90  IQVHAKDRDNPDNGGTITYSFVTAPGEKLKFEINNRTGLIRT------------------ 131

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q LDRD+P REKE Y+TV+A DNG PQL D CT K+T+ED+NDN P+FD+V Y
Sbjct: 132 ----TQVLDRDEPAREKEAYLTVLATDNGRPQLDDVCTFKVTIEDVNDNSPVFDKVAY 185

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016155|ref|XP_003692054.1| PREDICTED: LOW QUALITY PROTEIN: DE-cadherin-like [Apis florea]

 Score =  121 bits (303), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 73/118 (61%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +QVHA D D P NGGTI Y  + APGE+ KF I+  TG+++T                  
Sbjct: 88  IQVHAKDRDNPDNGGTITYSFVTAPGEKLKFEINNRTGLIRT------------------ 129

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q LDRD+P REKE Y+TV+A DNG PQL D CT K+T+ED+NDN P+FD+V Y
Sbjct: 130 ----TQVLDRDEPAREKEAYLTVLATDNGRPQLDDVCTFKVTIEDVNDNSPVFDKVAY 183

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404065|ref|XP_003486995.1| PREDICTED: DE-cadherin-like [Bombus impatiens]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 73/118 (61%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           ++VHA D D P +GGTI Y  + APGE+ KF I+  TG+++T                  
Sbjct: 90  IKVHAEDRDHPDDGGTITYSFVTAPGEKLKFEINNRTGLIRT------------------ 131

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q LDRD+P REKE Y+TV+A DNG PQL D CT K+T+ED+NDN P+FD+V Y
Sbjct: 132 ----TQVLDRDEPAREKEAYLTVLATDNGRPQLDDVCTFKVTIEDVNDNGPVFDKVAY 185

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725620|ref|XP_003401166.1| PREDICTED: DE-cadherin-like [Bombus terrestris]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 73/118 (61%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           ++VHA D D P +GGTI Y  + APGE+ KF I+  TG+++T                  
Sbjct: 90  IKVHAEDRDHPDDGGTITYSFVTAPGEKLKFEINNRTGLIRT------------------ 131

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q LDRD+P REKE Y+TV+A DNG PQL D CT K+T+ED+NDN P+FD+V Y
Sbjct: 132 ----TQVLDRDEPAREKEAYLTVLATDNGRPQLDDVCTFKVTIEDVNDNGPVFDKVAY 185

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024902|gb|EGI65090.1| DE-cadherin [Acromyrmex echinatior]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 56/118 (47%), Positives = 71/118 (60%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +QVHA D DPP  GGTI Y   K P +R KF+I+ +TG++ T                  
Sbjct: 120 IQVHAEDRDPPEEGGTITYSFAKDPKDRLKFAINNKTGLITT------------------ 161

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q LDRD+P REKE+Y+TV+A DNG PQL D CT K+T+ED+NDN P FD+  Y
Sbjct: 162 ----TQILDRDEPAREKEVYLTVLATDNGRPQLDDHCTFKVTIEDVNDNYPEFDKANY 215

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493189|ref|XP_001603649.2| PREDICTED: DE-cadherin-like [Nasonia vitripennis]

 Score =  112 bits (281), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/118 (48%), Positives = 68/118 (57%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + VHA D DPP +GGTI Y  +   GE+ KF ID  TG + T                  
Sbjct: 94  LTVHAEDRDPPEDGGTITYSFVTTTGEKLKFKIDNTTGEITT------------------ 135

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                  LDRD+P REKEIY+TV+A DNG PQL D CT K+TV DINDN P+FD+V Y
Sbjct: 136 ----THMLDRDEPAREKEIYLTVLATDNGRPQLDDVCTFKVTVTDINDNAPVFDKVSY 189

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019060|ref|XP_002429984.1| Cadherin-23 precursor, putative [Pediculus humanus corporis] gi|212515039|gb|EEB17246.1| Cadherin-23 precursor, putative [Pediculus humanus corporis]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/118 (44%), Positives = 68/118 (57%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            QV A D DP  NGG I Y  + +PGER +F+I+ +TGI++T Y  DRD+P         
Sbjct: 72  FQVKAIDKDPIENGGKISYTFVSSPGERLRFTIESDTGIIRTQYVFDRDEPT-------- 123

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                         REKE+Y+ V A DNG PQL D C +K+T+EDINDN P FD+  Y
Sbjct: 124 --------------REKEVYLNVRATDNGHPQLDDVCLIKVTIEDINDNSPFFDKANY 167

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024905|gb|EGI65093.1| DE-cadherin [Acromyrmex echinatior]

 Score =  107 bits (266), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/118 (44%), Positives = 69/118 (58%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +QVHA D DPP +GGT+ Y  + APG+R KF ID +TG++ T   LDRD+P R       
Sbjct: 182 IQVHADDRDPPEDGGTVTYSFLIAPGDRIKFEIDNKTGLITTTQVLDRDEPAR------- 234

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                          EKE Y+T++A DNG PQL   C +K+ +ED NDN+P FD+  Y
Sbjct: 235 ---------------EKEAYLTILATDNGRPQLDAICALKVIIEDENDNKPAFDKASY 277

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|61162121|dbj|BAD91050.1| Gb1-cadherin [Gryllus bimaculatus]

 Score =  104 bits (259), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/118 (45%), Positives = 66/118 (55%), Gaps = 22/118 (18%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + V A D DPP  GGT+ Y  + A GER KF ID  TG + T                  
Sbjct: 75  LTVQAEDRDPPDAGGTLTYSFVTALGEREKFRIDNVTGEITT------------------ 116

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                Q  DRD+P REKE+YI V A DNG PQL D C++K+ +EDINDN P+FD+V Y
Sbjct: 117 ----KQPFDRDEPSREKEVYIAVRATDNGRPQLDDICSIKVVIEDINDNRPIFDKVSY 170

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
UNIPROTKB|F1NWW5	4592	FAT1 "Uncharacterized protein"	0.5	0.012	0.474	3.6e-12
UNIPROTKB|E2R353	4591	FAT1 "Uncharacterized protein"	0.398	0.010	0.531	3.9e-09
UNIPROTKB|F6XXM1	5056	FAT1 "Uncharacterized protein"	0.398	0.009	0.531	5.2e-09
ZFIN|ZDB-GENE-050608-3	939	pcdh1g3 "protocadherin 1 gamma	0.449	0.056	0.410	1.2e-10
FB|FBgn0003391	1507	shg "shotgun" [Drosophila mela	0.423	0.033	0.54	2.5e-10
UNIPROTKB|A8MWK3	875	CDH2 "Cadherin-2" [Homo sapien	0.423	0.057	0.444	2.8e-10
UNIPROTKB|P19022	906	CDH2 "Cadherin-2" [Homo sapien	0.423	0.055	0.444	3.1e-10
UNIPROTKB|F1PEC4	906	CDH2 "Uncharacterized protein"	0.423	0.055	0.444	3.9e-10
MGI|MGI:88355	906	Cdh2 "cadherin 2" [Mus musculu	0.423	0.055	0.444	3.9e-10
RGD|69280	906	Cdh2 "cadherin 2" [Rattus norv	0.423	0.055	0.444	3.9e-10

UNIPROTKB|F1NWW5 FAT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 127 (49.8 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
 Identities = 28/59 (47%), Positives = 34/59 (57%)

Query:    60 TTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             TT   +  +D  D E   E Y+TV A D GTP LSD  T+ I V DINDN P+F +  Y
Sbjct:  3285 TTVGAIFIIDSLDYESSHEYYLTVEATDGGTPSLSDVVTVNINVTDINDNTPVFSQDTY 3343

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005911 "cell-cell junction" evidence=IEA

GO:0007015 "actin filament organization" evidence=IEA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030175 "filopodium" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

UNIPROTKB|E2R353 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
 Identities = 25/47 (53%), Positives = 29/47 (61%)

Query:    72 DPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             D E   E Y+TV A D GTP LSD  T+ I V DINDN P+F +  Y
Sbjct:  3297 DYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNSPVFSQDTY 3343

GO:0016021 "integral to membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|F6XXM1 FAT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 125 (49.1 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
 Identities = 25/47 (53%), Positives = 29/47 (61%)

Query:    72 DPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             D E   E Y+TV A D GTP LSD  T+ I V DINDN P+F +  Y
Sbjct:  3297 DYESSHEYYLTVEATDGGTPSLSDVATVNINVTDINDNSPVFSQDTY 3343

GO:0016021 "integral to membrane" evidence=IEA

GO:0008502 "melatonin receptor activity" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

ZFIN|ZDB-GENE-050608-3 pcdh1g3 "protocadherin 1 gamma 3" [Danio rerio (taxid:7955)]

 Score = 115 (45.5 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query:    63 IRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             +  +ALDR   E+E +  IT+ A D G+P LS + T+ + V D+NDN P+F++  Y
Sbjct:   404 VMTKALDR---EKESDYNITITATDGGSPPLSTSMTIHLFVSDVNDNPPVFEQQVY 456

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0003391 shg "shotgun" [Drosophila melanogaster (taxid:7227)]

 Score = 161 (61.7 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 27/50 (54%), Positives = 36/50 (72%)

Query:    69 DRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             DRD+P  EK +++TV A DNG P L D CT  +T+EDINDN P F++ +Y
Sbjct:   151 DRDEPIHEKFVFVTVQATDNGLPPLDDVCTFNVTIEDINDNAPAFNKARY 200

GO:0005886 "plasma membrane" evidence=NAS;IDA

GO:0007156 "homophilic cell adhesion" evidence=ISS;NAS;IDA

GO:0007507 "heart development" evidence=IMP;TAS

GO:0007314 "oocyte anterior/posterior axis specification" evidence=NAS

GO:0007298 "border follicle cell migration" evidence=IMP;TAS

GO:0030708 "germarium-derived female germ-line cyst encapsulation" evidence=TAS

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISS;IDA;NAS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=ISS

GO:0050839 "cell adhesion molecule binding" evidence=ISS

GO:0030720 "oocyte localization involved in germarium-derived egg chamber formation" evidence=TAS

GO:0016021 "integral to membrane" evidence=NAS

GO:0002009 "morphogenesis of an epithelium" evidence=NAS;TAS

GO:0005912 "adherens junction" evidence=NAS

GO:0008356 "asymmetric cell division" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=NAS

GO:0001748 "optic lobe placode development" evidence=IMP

GO:0030031 "cell projection assembly" evidence=IMP

GO:0048477 "oogenesis" evidence=IMP;TAS

GO:0007411 "axon guidance" evidence=NAS

GO:0005914 "spot adherens junction" evidence=IDA;NAS

GO:0005915 "zonula adherens" evidence=NAS

GO:0008258 "head involution" evidence=IMP

GO:0042078 "germ-line stem cell division" evidence=TAS

GO:0048103 "somatic stem cell division" evidence=TAS

GO:0007420 "brain development" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0005913 "cell-cell adherens junction" evidence=TAS

GO:0035147 "branch fusion, open tracheal system" evidence=IMP;TAS

GO:0007297 "ovarian follicle cell migration" evidence=TAS

GO:0035019 "somatic stem cell maintenance" evidence=IMP;TAS

GO:0007280 "pole cell migration" evidence=TAS

GO:0008406 "gonad development" evidence=IMP;TAS

GO:0007506 "gonadal mesoderm development" evidence=IMP

GO:0007424 "open tracheal system development" evidence=IMP;TAS

GO:0007399 "nervous system development" evidence=IMP

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0045186 "zonula adherens assembly" evidence=IMP

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0007435 "salivary gland morphogenesis" evidence=IGI

GO:0001738 "morphogenesis of a polarized epithelium" evidence=IMP

GO:0035262 "gonad morphogenesis" evidence=IGI;IMP

GO:0016318 "ommatidial rotation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045176 "apical protein localization" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0043296 "apical junction complex" evidence=IDA

GO:0030175 "filopodium" evidence=IDA

GO:0001745 "compound eye morphogenesis" evidence=IGI;IMP

GO:0003151 "outflow tract morphogenesis" evidence=IMP

GO:0008354 "germ cell migration" evidence=IMP

GO:0007281 "germ cell development" evidence=IMP

GO:0007155 "cell adhesion" evidence=IMP

GO:0042060 "wound healing" evidence=IMP

GO:0071907 "determination of digestive tract left/right asymmetry" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0044331 "cell-cell adhesion mediated by cadherin" evidence=IDA

GO:0005509 "calcium ion binding" evidence=IDA

UNIPROTKB|A8MWK3 CDH2 "Cadherin-2" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query:    59 ITTDIRVQALDRDDPEREKEIY-ITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
             ITT   +  LDR+ P  +  IY  T +A DNG P +S   T++I + DINDN P
Sbjct:   522 ITT---IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 572

GO:0005509 "calcium ion binding" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P19022 CDH2 "Cadherin-2" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query:    59 ITTDIRVQALDRDDPEREKEIY-ITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
             ITT   +  LDR+ P  +  IY  T +A DNG P +S   T++I + DINDN P
Sbjct:   553 ITT---IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 603

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005916 "fascia adherens" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0007157 "heterophilic cell-cell adhesion" evidence=IEA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=IEA

GO:0016477 "cell migration" evidence=IEA

GO:0019903 "protein phosphatase binding" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0043410 "positive regulation of MAPK cascade" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0048514 "blood vessel morphogenesis" evidence=IEA

GO:0051146 "striated muscle cell differentiation" evidence=IEA

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0007155 "cell adhesion" evidence=TAS

GO:0008013 "beta-catenin binding" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0034329 "cell junction assembly" evidence=TAS

GO:0034332 "adherens junction organization" evidence=TAS

GO:0042692 "muscle cell differentiation" evidence=TAS

GO:0045216 "cell-cell junction organization" evidence=TAS

GO:0051149 "positive regulation of muscle cell differentiation" evidence=TAS

GO:0045294 "alpha-catenin binding" evidence=IPI

GO:0005911 "cell-cell junction" evidence=IDA

GO:0045295 "gamma-catenin binding" evidence=IPI

GO:0016342 "catenin complex" evidence=IDA

GO:0014704 "intercalated disc" evidence=ISS

GO:0005913 "cell-cell adherens junction" evidence=IDA

UNIPROTKB|F1PEC4 CDH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 103 (41.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query:    59 ITTDIRVQALDRDDPEREKEIY-ITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
             ITT   +  LDR+ P  +  IY  T +A DNG P +S   T++I + DINDN P
Sbjct:   553 ITT---IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 603

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007156 "homophilic cell adhesion" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

MGI|MGI:88355 Cdh2 "cadherin 2" [Mus musculus (taxid:10090)]

 Score = 103 (41.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query:    59 ITTDIRVQALDRDDPEREKEIY-ITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
             ITT   +  LDR+ P  +  IY  T +A DNG P +S   T++I + DINDN P
Sbjct:   553 ITT---IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 603

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=ISO

GO:0005911 "cell-cell junction" evidence=ISO;IDA

GO:0005912 "adherens junction" evidence=IDA

GO:0005913 "cell-cell adherens junction" evidence=ISO

GO:0005916 "fascia adherens" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=IDA

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007157 "heterophilic cell-cell adhesion" evidence=IDA

GO:0007416 "synapse assembly" evidence=ISO

GO:0008013 "beta-catenin binding" evidence=ISO

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISO;IDA

GO:0016342 "catenin complex" evidence=ISO

GO:0016477 "cell migration" evidence=IDA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=IPI

GO:0030027 "lamellipodium" evidence=IDA

GO:0030315 "T-tubule" evidence=ISO

GO:0031641 "regulation of myelination" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0032880 "regulation of protein localization" evidence=ISO

GO:0035023 "regulation of Rho protein signal transduction" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0043410 "positive regulation of MAPK cascade" evidence=IGI

GO:0045202 "synapse" evidence=ISO;IDA

GO:0045294 "alpha-catenin binding" evidence=ISO

GO:0045295 "gamma-catenin binding" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0048514 "blood vessel morphogenesis" evidence=IMP

GO:0050770 "regulation of axonogenesis" evidence=ISO

GO:0051146 "striated muscle cell differentiation" evidence=IGI

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=IGI

RGD|69280 Cdh2 "cadherin 2" [Rattus norvegicus (taxid:10116)]

 Score = 103 (41.3 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query:    59 ITTDIRVQALDRDDPEREKEIY-ITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
             ITT   +  LDR+ P  +  IY  T +A DNG P +S   T++I + DINDN P
Sbjct:   553 ITT---IAVLDRESPNVKNNIYNATFLASDNGIPPMSGTGTLQIYLLDINDNAP 603

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005911 "cell-cell junction" evidence=ISO

GO:0005912 "adherens junction" evidence=ISO

GO:0005913 "cell-cell adherens junction" evidence=ISO;IDA

GO:0005916 "fascia adherens" evidence=ISO;IDA

GO:0007155 "cell adhesion" evidence=ISO

GO:0007156 "homophilic cell adhesion" evidence=IEA;ISO

GO:0007157 "heterophilic cell-cell adhesion" evidence=ISO

GO:0007416 "synapse assembly" evidence=IMP

GO:0008013 "beta-catenin binding" evidence=IPI

GO:0014704 "intercalated disc" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016324 "apical plasma membrane" evidence=ISO

GO:0016337 "cell-cell adhesion" evidence=IDA

GO:0016339 "calcium-dependent cell-cell adhesion" evidence=ISO;IMP

GO:0016342 "catenin complex" evidence=ISO

GO:0016477 "cell migration" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0030027 "lamellipodium" evidence=ISO

GO:0030315 "T-tubule" evidence=IDA

GO:0031641 "regulation of myelination" evidence=IMP

GO:0032403 "protein complex binding" evidence=IPI

GO:0032880 "regulation of protein localization" evidence=IMP

GO:0035023 "regulation of Rho protein signal transduction" evidence=IMP

GO:0043234 "protein complex" evidence=IDA

GO:0043410 "positive regulation of MAPK cascade" evidence=ISO

GO:0045202 "synapse" evidence=ISO;IDA

GO:0045294 "alpha-catenin binding" evidence=ISO

GO:0045295 "gamma-catenin binding" evidence=ISO

GO:0048514 "blood vessel morphogenesis" evidence=ISO

GO:0050770 "regulation of axonogenesis" evidence=IMP

GO:0051146 "striated muscle cell differentiation" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=IPI

GO:0090090 "negative regulation of canonical Wnt receptor signaling pathway" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	118
cd11304	98	cd11304, Cadherin_repeat, Cadherin tandem repeat d	6e-17
smart00112	81	smart00112, CA, Cadherin repeats	1e-15
pfam00028	92	pfam00028, Cadherin, Cadherin domain	2e-08

>gnl|CDD|206637 cd11304, Cadherin_repeat, Cadherin tandem repeat domain

 Score = 69.6 bits (171), Expect = 6e-17
 Identities = 37/109 (33%), Positives = 46/109 (42%), Gaps = 27/109 (24%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + V ATD D   NG  + Y I+ +  E   FSID  TG + T   LDR            
Sbjct: 17  LTVSATDPDSGENG-EVTYSIV-SGNEDGLFSIDPSTGEITTAKPLDR------------ 62

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDN 109
                        E +    +TV A D G P LS   T+ ITV D+NDN
Sbjct: 63  -------------EEQSSYTLTVTATDGGGPPLSSTATVTITVLDVNDN 98

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. The cadherin repeat domains occur as tandem repeats in the extracellular regions, which are thought to mediate cell-cell contact when bound to calcium. They play numerous roles in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-, CNR-, proto-, and FAT-family cadherin, desmocollin, and desmoglein, a large variety of domain architectures with varying repeat copy numbers. Cadherin-repeat containing proteins exist as monomers, homodimers, or heterodimers. Length = 98

>gnl|CDD|214520 smart00112, CA, Cadherin repeats

 Score = 65.8 bits (161), Expect = 1e-15
 Identities = 38/108 (35%), Positives = 46/108 (42%), Gaps = 27/108 (25%)

Query: 4   HATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDI 63
            ATD D   NG  + Y I+    +   FSID ETG + T   LDR               
Sbjct: 1   SATDADSGENG-KVTYSILSGNDDG-LFSIDPETGEITTTKPLDR--------------- 43

Query: 64  RVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
                     E + E  +TV A D G P LS   T+ ITV D+NDN P
Sbjct: 44  ----------EEQPEYTLTVEATDGGGPPLSSTATVTITVLDVNDNAP 81

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium. Length = 81

>gnl|CDD|215665 pfam00028, Cadherin, Cadherin domain

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 9/83 (10%)

Query: 1  MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
          + V ATD D   NG  I Y I+   G    F ID +TG + T   LDR+        Y  
Sbjct: 16 LTVTATDADLGPNGR-IFYSILG-GGPGGWFRIDPDTGDLSTTKPLDRE----SIGEYE- 68

Query: 61 TDIRVQALDRDDPEREKEIYITV 83
            + V A D   P       +T+
Sbjct: 69 --LTVLATDSGGPPLSSTTTVTI 89

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
smart00112	79	CA Cadherin repeats. Cadherins are glycoproteins i	99.84
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.76
KOG4289|consensus	2531		99.74
KOG4289|consensus	2531		99.72
PF00028	93	Cadherin: Cadherin domain; InterPro: IPR002126 Cad	99.7
KOG1219|consensus	4289		99.64
KOG1219|consensus	4289		99.63
cd00031	199	CA Cadherin repeat domain; Cadherins are glycoprot	99.3
KOG1834|consensus	952		98.75
KOG1834|consensus	952		97.91
smart00736	97	CADG Dystroglycan-type cadherin-like domains. Cadh	97.21
PF08266	84	Cadherin_2: Cadherin-like; InterPro: IPR013164 Cad	96.06
TIGR01965	99	VCBS_repeat VCBS repeat. This domain of about 100	94.7
PF05345	49	He_PIG: Putative Ig domain; InterPro: IPR008009 Th	83.36

>smart00112 CA Cadherin repeats

Probab=99.84  E-value=6.3e-20  Score=111.91  Aligned_cols=79  Identities=43%  Similarity=0.663  Sum_probs=70.4

Q ss_pred             EeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEEE
Q psy9968           6 TDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIA   85 (118)
Q Consensus         6 ~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~a   85 (118)
                      +|+|.| .|+.++|+|..+... .+|.|++.+|.|++.+.                      ||||   ....|.|.|.|
T Consensus         1 ~D~D~g-~n~~i~Y~i~~~~~~-~~F~i~~~tg~i~~~~~----------------------LD~e---~~~~y~l~v~a   53 (79)
T smart00112        1 TDADSG-ENGKVTYSILSGNED-GLFSIDPETGEITTTKP----------------------LDRE---EQPEYTLTVEA   53 (79)
T ss_pred             CCCCCC-cCcEEEEEEecCCCC-CEEEEeCCccEEEeCCc----------------------cCee---CCCeEEEEEEE
Confidence            488998 689999999965442 69999999999988888                      6887   55799999999


Q ss_pred             EECCCCCCeeEEEEEEEEEeCCCCCC
Q psy9968          86 EDNGTPQLSDACTMKITVEDINDNEP  111 (118)
Q Consensus        86 ~D~g~p~~s~~~~v~I~v~DvNDn~P  111 (118)
                      .|.|.|+++++++|.|+|.|+|||+|
T Consensus        54 ~D~~~~~~~~~~~v~I~V~D~Nd~~P   79 (79)
T smart00112       54 TDGGGPPLSSTATVTVTVLDVNDNAP   79 (79)
T ss_pred             EECCCCCcccEEEEEEEEEECCCCCC
Confidence            99999999999999999999999998

Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion. Cadherin domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium.

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.76  E-value=1.3e-17  Score=116.37  Aligned_cols=90  Identities=41%  Similarity=0.698  Sum_probs=78.5

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      ++.|.|+|.+ .++.+.|+|...... .+|.|++.+|.|++.+.                      ||||   ....|.+
T Consensus        18 ~~~a~D~D~~-~~~~~~y~i~~~~~~-~~F~i~~~tG~l~~~~~----------------------lD~e---~~~~~~l   70 (199)
T cd00031          18 TVSATDPDSG-ENGRVTYSILGGNED-GLFSIDPNTGVITTTKP----------------------LDRE---EQSEYTL   70 (199)
T ss_pred             EEEEECCCCC-CCceEEEEEeCCCCc-ccEEEeCCCCEEEECCC----------------------CCCc---CCceEEE
Confidence            5789999998 489999999965442 69999999999999998                      6887   5579999


Q ss_pred             EEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          82 TVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        82 ~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|.|.|.|.++++..+.|.|.|+|||+|.|.+..|
T Consensus        71 ~v~a~D~g~~~~~~~~~v~I~V~d~Nd~~P~~~~~~~  107 (199)
T cd00031          71 TVVASDGGGPPLSSTATVTVTVLDVNDNPPVFEQSSY  107 (199)
T ss_pred             EEEEEECCcCcceeEEEEEEEEccCCCCCCcccccce
Confidence            9999999888888999999999999999999985443

>KOG4289|consensus

Probab=99.74  E-value=7.9e-18  Score=142.15  Aligned_cols=92  Identities=33%  Similarity=0.557  Sum_probs=84.2

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      +||+|+|+|.| .|+++.|-+..+....+.|.|++.+|.|++.+.                      ||||   ....|.
T Consensus       803 lQVSatDaD~g-~Ng~v~y~~qg~~d~p~~F~IEptSGviRtl~r----------------------LdRE---~~avy~  856 (2531)
T KOG4289|consen  803 LQVSATDADSG-PNGRVYYTFQGGDDGPGDFYIEPTSGVIRTLRR----------------------LDRE---NVAVYV  856 (2531)
T ss_pred             EEEEEeccCCC-CCceEEEEecCCCCCCCceEEccCcceeehhhh----------------------hcch---heeEEE
Confidence            58999999999 799999998765555578999999999999999                      7998   678999


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |.+.|.|.|.|++++++.|+|+|.|+|||||+|++.+|
T Consensus       857 L~a~avDrg~p~ls~~~eItvtvldvNDnaPvfe~~e~  894 (2531)
T KOG4289|consen  857 LAAYAVDRGNPPLSAPVEITVTVLDVNDNAPVFEQDEL  894 (2531)
T ss_pred             EEEEEeeCCCCCcCCceEEEEEEEecCCCCCCCCCcce
Confidence            99999999999999999999999999999999999875

>KOG4289|consensus

Probab=99.72  E-value=2.1e-17  Score=139.64  Aligned_cols=91  Identities=35%  Similarity=0.607  Sum_probs=82.1

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      ++|.|+|.|.+ .|+.|+|++..+ +....|.||+.+|.|.+..+                      ||||   ....|.
T Consensus       289 LtvrAtD~Dsp-~Nani~Yrl~eg-~~~~~f~in~rSGvI~T~a~----------------------lDRE---~~~~y~  341 (2531)
T KOG4289|consen  289 LTVRATDGDSP-PNANIRYRLLEG-NAKNVFEINPRSGVISTRAP----------------------LDRE---ELESYQ  341 (2531)
T ss_pred             EEEEeccCCCC-CCCceEEEecCC-CccceeEEcCccceeeccCc----------------------cCHH---hhhheE
Confidence            47999999999 799999999954 44579999999999999999                      7887   556899


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |.|+|+|.|.|+...++.|.|+|.|+|||+|+|....|
T Consensus       342 L~VeAsDqG~~pgp~Ta~V~itV~D~NDNaPqFse~~Y  379 (2531)
T KOG4289|consen  342 LDVEASDQGRPPGPRTAMVEITVEDENDNAPQFSEKRY  379 (2531)
T ss_pred             EEEEeccCCCCCCCceEEEEEEEEecCCCCccccccce
Confidence            99999999998877899999999999999999998776

>PF00028 Cadherin: Cadherin domain; InterPro: IPR002126 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=99.70  E-value=4.6e-16  Score=97.45  Aligned_cols=77  Identities=38%  Similarity=0.485  Sum_probs=68.5

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      +++.|.|+|.+ .|+.+.|+|..+.. ..+|.|++.+|.|++.+.                      ||||   ..+.|.
T Consensus        16 ~~v~a~D~D~~-~n~~i~y~i~~~~~-~~~F~I~~~tg~i~~~~~----------------------LD~E---~~~~y~   68 (93)
T PF00028_consen   16 GQVTATDPDSG-PNSQITYSILGGNP-DGLFSIDPNTGEISLKKP----------------------LDRE---TQSSYQ   68 (93)
T ss_dssp             EEEEEEESSTS-TTSSEEEEEEETTS-TTSEEEETTTTEEEESSS----------------------SCTT---TTSEEE
T ss_pred             EEEEEEeCCCC-CCceEEEEEecCcc-cCceEEeeeeecccccee----------------------cCcc---cCCEEE
Confidence            36899999988 79999999997553 469999999999999999                      6887   567999


Q ss_pred             EEEEEEEC-CCCCCeeEEEEEEEEE
Q psy9968          81 ITVIAEDN-GTPQLSDACTMKITVE  104 (118)
Q Consensus        81 l~v~a~D~-g~p~~s~~~~v~I~v~  104 (118)
                      |.|.|+|. |.|+++++++|.|+|.
T Consensus        69 l~v~a~D~~~~~~~~~~~~V~I~V~   93 (93)
T PF00028_consen   69 LTVRATDSGGSPPLSSTATVTINVL   93 (93)
T ss_dssp             EEEEEEETTTSSEEEEEEEEEEEEE
T ss_pred             EEEEEEECCCCCCCEEEEEEEEEEC
Confidence            99999999 8899999999999985

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion.; GO: 0005509 calcium ion binding, 0007156 homophilic cell adhesion, 0016020 membrane; PDB: 2A4E_A 2A4C_B 2O72_A 2QVI_A 1NCJ_A 3Q2W_A 3Q2N_A 3LNH_B 3LNI_A 3Q2L_A ....

>KOG1219|consensus

Probab=99.64  E-value=5.1e-16  Score=135.07  Aligned_cols=91  Identities=32%  Similarity=0.538  Sum_probs=82.8

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      +|+.|+|+|.. .|+++.|.|.+ ++...+|+||+.||.|++.+.                      ||||   +++++.
T Consensus      1078 vq~ea~D~Dss-sn~kLmykI~s-Gnyq~FF~Id~~TG~iTt~r~----------------------LDRE---~qdEHi 1130 (4289)
T KOG1219|consen 1078 VQAEANDPDSS-SNQKLMYKITS-GNYQGFFQIDPETGLITTIRR----------------------LDRE---KQDEHI 1130 (4289)
T ss_pred             EEeccCCCCcc-cCcceEEEEcc-CCccceEEEccccceeeeehh----------------------hccc---ccccce
Confidence            47889999977 68999999994 555689999999999999999                      7998   889999


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |.|.+.|.|.|++.+..-|.|.|+|+|||+|+|.|..|
T Consensus      1131 LeVTi~D~gep~l~s~~rviV~IldvNdnsp~Flqk~~ 1168 (4289)
T KOG1219|consen 1131 LEVTIQDNGEPWLCSNQRVIVSILDVNDNSPRFLQKKT 1168 (4289)
T ss_pred             EEEEEecCCCCccccceEEEEEEeeccCCchhhhhhee
Confidence            99999999999999999999999999999999998754

>KOG1219|consensus

Probab=99.63  E-value=1.6e-15  Score=132.15  Aligned_cols=91  Identities=40%  Similarity=0.646  Sum_probs=83.4

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      ++|.|.|.|.| ..+.++|+|.. +...+.|+||..+|.|++.+.                      ||||   ....|.
T Consensus       973 i~i~A~dedsg-ldg~l~Y~I~~-gdg~g~FsId~~tG~irTl~~----------------------lDrE---~ks~Yw 1025 (4289)
T KOG1219|consen  973 IRIQARDEDSG-LDGELSYKIRT-GDGDGIFSIDSTTGSIRTLKA----------------------LDRE---KKSSYW 1025 (4289)
T ss_pred             EEEEEecCCCC-ccceEEEEEEc-CCcceeEEecCCcceEeechh----------------------hchh---hcceEE
Confidence            46899999999 78999999995 344578999999999999999                      7888   778999


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |++.|.|.|.+++++.+.+.|.|+|+|||+|+|.++.|
T Consensus      1026 ltveA~D~gt~~~ssv~~vyI~ieDvNDn~Pq~s~pvy 1063 (4289)
T KOG1219|consen 1026 LTVEAKDLGTVPLSSVCEVYIEIEDVNDNVPQFSSPVY 1063 (4289)
T ss_pred             EEEEEEecCCCccccceeEEEEEEecCCCCcccCCceE
Confidence            99999999999999999999999999999999999877

>cd00031 CA Cadherin repeat domain; Cadherins are glycoproteins involved in Ca2+-mediated cell-cell adhesion; these domains occur as repeats in the extracellular regions which are thought to mediate cell-cell contact when bound to calcium; plays a role in cell fate, signalling, proliferation, differentiation, and migration; members include E-, N-, P-, T-, VE-,CNR-,proto-,and FAT-family cadherin, desmocollin, and desmoglein, exists as monomers or dimers (hetero- and homo-); two copies of the repeat are present here

Probab=99.30  E-value=5.5e-11  Score=82.80  Aligned_cols=77  Identities=38%  Similarity=0.588  Sum_probs=67.0

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      ++.|+|+|.+ .++.++|+|..... ..+|.|++.+|.|++.+.                      ||+|   ....|.+
T Consensus       123 ~~~a~D~D~~-~~~~~~y~l~~~~~-~~~f~i~~~~G~i~~~~~----------------------ld~e---~~~~~~l  175 (199)
T cd00031         123 TVTATDADSG-ENAKLTYSILSGND-KELFSIDPNTGIITLAKP----------------------LDRE---EKSSYEL  175 (199)
T ss_pred             EEEEEcCCCC-CCccEEEEEeCCCC-CCEEEEeCCceEEEeCCc----------------------cCCc---cCceEEE
Confidence            6889999998 68999999996544 359999999999999988                      6776   4568999


Q ss_pred             EEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          82 TVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        82 ~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      .|.|.|.+.+++++++.+.|.|.|
T Consensus       176 ~v~a~D~~~~~~~~~~~i~i~v~d  199 (199)
T cd00031         176 TVVATDGGGPPLSSTATVTVTVLD  199 (199)
T ss_pred             EEEEEECCCCCceeEEEEEEEEEC
Confidence            999999998889999999999876

>KOG1834|consensus

Probab=98.75  E-value=7.2e-08  Score=78.16  Aligned_cols=91  Identities=31%  Similarity=0.455  Sum_probs=67.9

Q ss_pred             EEEEeCCCCC-CCCcE-EEEEEeCCCCCccEEEeCCCC--EEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           3 VHATDVDPPS-NGGTI-QYRIIKAPGERAKFSIDKETG--IVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         3 v~A~D~D~~~-~n~~i-~y~i~~~~~~~~~F~id~~tG--~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +.|-|.|.+- ..|.| -|.|.+++-.-....+|..||  .|+.+.+                      ||.|   .++.
T Consensus        54 l~aLdkdaplr~ageiC~fklhgq~vPFdavVvdK~TGegvlRaK~~----------------------lDCe---lqke  108 (952)
T KOG1834|consen   54 LAALDKDAPLRYAGEICGFKLHGQPVPFDAVVVDKYTGEGVLRAKEP----------------------LDCE---LQKE  108 (952)
T ss_pred             eeeecCCCCcccccccceeEecCCCCCceEEEEeccCCceEEeecCc----------------------cccc---cccc
Confidence            3466777652 23555 677775443223455799998  5666666                      7887   6789


Q ss_pred             EEEEEEEEECCCC------CCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          79 IYITVIAEDNGTP------QLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        79 ~~l~v~a~D~g~p------~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |+++|+|.|+|+.      ..|..++|.|+|.|+|.++|+|..+.|
T Consensus       109 ytf~iQAydCg~gpdgtn~kKShkatvhIrVkDvNe~AP~f~ep~Y  154 (952)
T KOG1834|consen  109 YTFTIQAYDCGNGPDGTNTKKSHKATVHIRVKDVNEFAPVFKEPWY  154 (952)
T ss_pred             ceEEEEEEecCCCCCccccccccceEEEEEeccccccCchhcccce
Confidence            9999999999763      467778999999999999999998877

>KOG1834|consensus

Probab=97.91  E-value=6.7e-05  Score=61.42  Aligned_cols=76  Identities=26%  Similarity=0.423  Sum_probs=60.2

Q ss_pred             CEEEEEeCCCCCCCCcE-EEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceE
Q psy9968           1 MQVHATDVDPPSNGGTI-QYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEI   79 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i-~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~   79 (118)
                      ++|.|.|.|-+..+++| .|.|.. ++  -.|.||. .|.|+....                      |.+.   ++.+|
T Consensus       168 l~veAiD~DCspq~sqIC~YEI~t-~d--~PFaIdn-~G~irnTek----------------------Lny~---ke~~Y  218 (952)
T KOG1834|consen  168 LRVEAIDKDCSPQYSQICEYEITT-PD--VPFAIDN-DGNIRNTEK----------------------LNYT---KEHQY  218 (952)
T ss_pred             EEEEeecCCCCCcccceeEEEecC-CC--CceEEcC-CCccccccc----------------------cccc---cceeE
Confidence            47899999988667777 788884 43  3799986 599999998                      5665   56799


Q ss_pred             EEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          80 YITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        80 ~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      .|+|.|.|+|..+..+-..|+|+|..
T Consensus       219 ~ltVtAyDCg~kraa~d~lV~v~Vkp  244 (952)
T KOG1834|consen  219 KLTVTAYDCGKKRAASDSLVTVHVKP  244 (952)
T ss_pred             EEEEEEEecccccccCcceEEEEecC
Confidence            99999999998665555778888753

>smart00736 CADG Dystroglycan-type cadherin-like domains

Probab=97.21  E-value=0.021  Score=35.84  Aligned_cols=71  Identities=28%  Similarity=0.333  Sum_probs=51.5

Q ss_pred             EEeCCCCCCCCcEEEEEEeCC--CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEE
Q psy9968           5 ATDVDPPSNGGTIQYRIIKAP--GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYIT   82 (118)
Q Consensus         5 A~D~D~~~~n~~i~y~i~~~~--~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~   82 (118)
                      ..|+| +   ..+.|++....  +...|.+.|+.++.+.-. +                      ...+    ...|.+.
T Consensus        24 F~d~d-~---~~lty~~~~~~~~~lP~Wl~fd~~~~~~~Gt-P----------------------~~~~----~g~~~i~   72 (97)
T smart00736       24 FTDAD-G---DTLTYSATLSDGSALPSWLSFDSDTGTLSGT-P----------------------TNSD----VGSLSLK   72 (97)
T ss_pred             eECCC-C---CeEEEEEEeCCCCCCCCeEEEeCCCCEEEEE-C----------------------CCCC----CcEEEEE
Confidence            45666 3   46899987432  224599999999988774 4                      1221    2469999


Q ss_pred             EEEEECCCCCCeeEEEEEEEEEeCCC
Q psy9968          83 VIAEDNGTPQLSDACTMKITVEDIND  108 (118)
Q Consensus        83 v~a~D~g~p~~s~~~~v~I~v~DvND  108 (118)
                      |.|+|..+  .+....+.|.|.+.|+
T Consensus        73 v~a~D~~g--~~~~~~f~i~V~~~~~   96 (97)
T smart00736       73 VTATDSSG--ASASDTFTITVVNTND   96 (97)
T ss_pred             EEEEECCC--CEEEEEEEEEEeCCCC
Confidence            99999875  5677889999999887

Cadherin-homologous domains present in metazoan dystroglycans and alpha/epsilon sarcoglycans, yeast Axl2p and in a very large protein from magnetotactic bacteria. Likely to bind calcium ions.

>PF08266 Cadherin_2: Cadherin-like; InterPro: IPR013164 Cadherins are a family of adhesion molecules that mediate Ca2+-dependent cell-cell adhesion in all solid tissues of the organism which modulate a wide variety of processes including cell polarisation and migration [, ,]

Probab=96.06  E-value=0.021  Score=35.31  Aligned_cols=32  Identities=22%  Similarity=0.417  Sum_probs=20.6

Q ss_pred             EEEEEEeCCCCCccEEEeCCCCEEEEeeeecCC
Q psy9968          17 IQYRIIKAPGERAKFSIDKETGIVKTLYALDRD   49 (118)
Q Consensus        17 i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e   49 (118)
                      ..|+|...+ ...+|.+++.||.|++...+|+|
T Consensus        34 ~~~ri~s~~-~~~~~~v~~~tG~L~v~~rIDRE   65 (84)
T PF08266_consen   34 RNFRIVSEG-NSQYFRVNEKTGDLFVSERIDRE   65 (84)
T ss_dssp             TTBEEE-SS-SS-SEEE-TTTSEEEESS--SCC
T ss_pred             cceEEeecC-CcceeEecCCceeEEeCCccCHH
Confidence            357776543 34799999999999999995444

Cadherin-mediated cell-cell junctions are formed as a result of interaction between extracellular domains of identical cadherins, which are located on the membranes of the neighbouring cells. The stability of these adhesive junctions is ensured by binding of the intracellular cadherin domain with the actin cytoskeleton. There are a number of different isoforms distributed in a tissue-specific manner in a wide variety of organisms. Cells containing different cadherins tend to segregate in vitro, while those that contain the same cadherins tend to preferentially aggregate together. This observation is linked to the finding that cadherin expression causes morphological changes involving the positional segregation of cells into layers, suggesting they may play an important role in the sorting of different cell types during morphogenesis, histogenesis and regeneration. They may also be involved in the regulation of tight and gap junctions, and in the control of intercellular spacing. Cadherins are evolutionary related to the desmogleins which are component of intercellular desmosome junctions involved in the interaction of plaque proteins. Structurally, cadherins comprise a number of domains: classically, these include a signal sequence; a propeptide of around 130 residues; a single transmembrane domain and five tandemly repeated extracellular cadherin domains, 4 of which are cadherin repeats, and the fifth contains 4 conserved cysteines and a N-terminal cytoplasmic domain []. However, proteins are designated as members of the broadly defined cadherin family if they have one or more cadherin repeats. A cadherin repeat is an independently folding sequence of approximately 110 amino acids that contains motifs with the conserved sequences DRE, DXNDNAPXF, and DXD. Crystal structures have revealed that multiple cadherin domains form Ca2+-dependent rod-like structures with a conserved Ca2+-binding pocket at the domain-domain interface. Cadherins depend on calcium for their function: calcium ions bind to specific residues in each cadherin repeat to ensure its proper folding, to confer rigidity upon the extracellular domain and is essential for cadherin adhesive function and for protection against protease digestion. This entry represents a cadherin domain that is usually found at the N terminus of cadherin proteins.; PDB: 1WUZ_A 1WYJ_A.

>TIGR01965 VCBS_repeat VCBS repeat

Probab=94.70  E-value=0.65  Score=29.59  Aligned_cols=82  Identities=27%  Similarity=0.280  Sum_probs=48.7

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEE-EEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIV-KTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i-~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      ++.++|+|.+.   ...++.......-..|.|++ .|.- +....   .            ..++|.|...   ....-.
T Consensus         3 ~Lt~sD~D~gd---~~~~s~~~~~g~yGtlti~~-~G~wtYtl~n---~------------~~avq~L~~G---e~~tds   60 (99)
T TIGR01965         3 QLTISDADAGQ---AHFIAQTDAAGQYGTFSIDA-DGQWTYQADN---S------------QTAVQALKAG---ETLTDT   60 (99)
T ss_pred             ceEEeCCCCCC---ceEEecccccCCcEEEEECC-CCcEEEEeCC---C------------cHHHHhhcCC---CEEEEE
Confidence            68899999872   34566643222335688887 5642 22211   0            0134445543   222345


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCe
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPM  112 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~  112 (118)
                      +.+.+.|+      .+.+|.|+|.-.|| +|+
T Consensus        61 Ftvtv~DG------tt~~vtItI~GtND-apv   85 (99)
T TIGR01965        61 FTVTSADG------TSQTVTITITGAND-AAV   85 (99)
T ss_pred             EEEEEeCC------CeEEEEEEEEccCC-CCE
Confidence            77778884      28889999999999 553

This domain of about 100 residues is found multiple (up to 35) copies in long proteins from several species of Vibrio, Colwellia, Bradyrhizobium, and Shewanella (hence the name VCBS) and in smaller copy numbers in proteins from several other bacteria. The large protein size and repeat copy numbers, species distribution, and suggested activities of several member proteins suggests a role for this domain in adhesion.

>PF05345 He_PIG: Putative Ig domain; InterPro: IPR008009 This alignment represents the conserved core region of a ~90 residue repeat found in several haemagglutinins and other cell surface proteins

Probab=83.36  E-value=5.6  Score=21.77  Aligned_cols=36  Identities=22%  Similarity=0.232  Sum_probs=26.5

Q ss_pred             CccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEEEEECC
Q psy9968          28 RAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNG   89 (118)
Q Consensus        28 ~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~a~D~g   89 (118)
                      .....+|+.+|.|.-.-.-                      .-    ....|.+.|.|+|..
T Consensus        13 P~gLs~d~~tG~isGtp~~----------------------~~----~~G~y~~~vtatd~~   48 (49)
T PF05345_consen   13 PSGLSLDPSTGTISGTPTS----------------------SV----QPGTYTFTVTATDGS   48 (49)
T ss_pred             CCcEEEeCCCCEEEeecCC----------------------Cc----cccEEEEEEEEEcCC
Confidence            4589999999999887441                      10    124799999999874

Sequence similarities to Hyalin (IPR003410 from INTERPRO) and the PKD domain (IPR000601 from INTERPRO) suggest an Ig-like fold so this family may be similar in function to the (IPR003791 from INTERPRO) and (IPR003790 from INTERPRO) protein families.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	118
3q2w_A	559	Crystal Structure Of Mouse N-Cadherin Ectodomain Le		3e-05
3q2v_A	550	Crystal Structure Of Mouse E-Cadherin Ectodomain Le		6e-04

>pdb|3Q2W|A Chain A, Crystal Structure Of Mouse N-Cadherin Ectodomain Length = 559

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 27/123 (21%)
Query: 1   MQVHATDVDPPSN-GGTIQYRII-KAPGERAK--FSIDKETG-IVKTLYALDRDDPEREK 55
           M V A D D P+   G ++YRI+ +AP   +   F+I+ ETG I+     LDR+  ++  
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAGLDREKVQQYT 187
Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
            I   TD+                      E N T  LS+  T  ITV D+NDN P F  
Sbjct: 188 LIIQATDM----------------------EGNPTYGLSNTATAVITVTDVNDNPPEFTA 225
Query: 116 VQY 118
           + +
Sbjct: 226 MTF 228

>pdb|3Q2V|A Chain A, Crystal Structure Of Mouse E-Cadherin Ectodomain Length = 550

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 31/124 (25%)
Query: 1   MQVHATDVDPPSN--GGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYA-LDRDDPERE 54
           M+V ATD D   N     I Y I+    E   +  F+++++TG++  L + LDR      
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDR------ 181
Query: 55  KEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
            E Y T  + VQA D                +  G   LS      ITV+DINDN P+F+
Sbjct: 182 -ESYPTYTLVVQAAD---------------LQGEG---LSTTAKAVITVKDINDNAPVFN 222
Query: 115 RVQY 118
              Y
Sbjct: 223 PSTY 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-18
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-16
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	5e-12
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	7e-09
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	2e-08
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-05
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	3e-04
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	1e-17
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	9e-16
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	3e-12
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	5e-10
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	6e-09
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	1e-17
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	3e-15
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	4e-13
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	2e-12
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	8e-09
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	2e-17
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	4e-17
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	1e-13
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-16
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	2e-15
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	9e-14
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	5e-13
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	1e-09
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	2e-16
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	1e-09
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	2e-16
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	3e-16
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	5e-15
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	2e-06
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	4e-16
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	7e-10
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	2e-15
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-15
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	2e-15
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	4e-15
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	2e-12
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	4e-15
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	1e-10
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	1e-14
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	3e-11
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	2e-14
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	5e-14
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	1e-13
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-14
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	2e-13
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	7e-12
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	3e-09
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	6e-14
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	3e-13
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	4e-11
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	4e-11
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	1e-09
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	4e-09
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	4e-09
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	3e-08
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	4e-08

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
           M V ATD D   +   G + Y I+K          F+I++ETG++  +            
Sbjct: 283 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI------------ 330

Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
                       LDR   E+  E  +TV A D     LS      I + D NDN P+FD 
Sbjct: 331 ---------GTGLDR---EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 378

Query: 116 VQY 118
             Y
Sbjct: 379 KTY 381

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 24/118 (20%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + + A D D       + Y I   P      +++K+ GIV     LDR+    +   Y  
Sbjct: 507 ISLVAQDPDKQQIQ-KLSYFIGNDPAR--WLTVNKDNGIVTGNGNLDRESEYVKNNTY-- 561

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                               + ++  D+G    +   T+ + V D+NDN P+     +
Sbjct: 562 -------------------TVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 600

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 59.9 bits (145), Expect = 5e-12
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 29/121 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++     +       + Y I     +      F I+ ETG +     LDR+    E + 
Sbjct: 174 KRLVQIKSNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE----EYDK 228

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
           Y+   +   A+  +    E+ + IT                  I V D NDN P F +  
Sbjct: 229 YV---LSSHAVSENGSPVEEPMEIT------------------INVIDQNDNRPKFTQDV 267

Query: 118 Y 118
           +
Sbjct: 268 F 268

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 51.0 bits (122), Expect = 7e-09
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 34/125 (27%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSI----DKETGIVKTLYALDRDDPEREKE 56
            ++  TD+D P          I+   E   F+I    +   GI+ T   LD         
Sbjct: 395 QRLSVTDLDMPGTPAWQAVYKIR-VNEGGFFNITTDPESNQGILTTAKGLDF-------- 445

Query: 57  IYITTDIRVQALDRDDPEREKEIYITVIAED---NGTPQLSDACTMKITVEDINDNEPMF 113
                            E  K+  + +  E+      P  +   T+ +TVED+N+  P F
Sbjct: 446 -----------------ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFF 487

Query: 114 DRVQY 118
                
Sbjct: 488 VPAVS 492

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 11/118 (9%), Positives = 23/118 (19%), Gaps = 28/118 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
             +  +D D P N    +  +     +    +     G    L    +            
Sbjct: 610 QVLTISDADIPPNTYPYKVSLSHGS-DLTWKAELDSKGTSMLLSPTQQ------------ 656

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                         ++ +  I V+  D           +  TV               
Sbjct: 657 -------------LKKGDYSIYVLLSDAQNNPQLT--VVNATVCSCEGKAIKCQEKLV 699

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 6/35 (17%), Positives = 11/35 (31%)

Query: 84  IAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
            A       L     +     D++  +P F   +Y
Sbjct: 8   NASVWLCGLLCLLQVVPSINADVSGCKPGFSSAEY 42

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A* Length = 880

 Score = 37.9 bits (88), Expect = 3e-04
 Identities = 10/115 (8%), Positives = 28/115 (24%), Gaps = 18/115 (15%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            +V+ +D     +     Y +  +     +F +    G V     +      +       
Sbjct: 58  GKVNFSDCTTRKH---GLYDVGDS-----RFRVL-PDGTVLVKRHVKLHKDTK------- 101

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
               +   D    +    I +      +G    S +  + +             +
Sbjct: 102 --FTISTWDARGIKHSTNIAVASKRHRSGEEAHSRSSKLPVLTFPETHTGLKRKK 154

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 76.2 bits (188), Expect = 1e-17
 Identities = 35/123 (28%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
           M V ATD D   +   G + Y I+K          F+I++ETG++  +            
Sbjct: 134 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLI------------ 181

Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
                       LDR   E+  E  +TV A D     LS      I + D NDN P+FD 
Sbjct: 182 ---------GTGLDR---EKFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDP 229

Query: 116 VQY 118
             Y
Sbjct: 230 KTY 232

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 70.8 bits (174), Expect = 9e-16
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 24/118 (20%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + + A D D       + Y I   P      +++K+ GIV     LDR+    +   Y  
Sbjct: 358 ISLVAQDPDKQQIQ-KLSYFIGNDPAR--WLTVNKDNGIVTGNGNLDRESEYVKNNTY-- 412

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                               + ++  D+G    +   T+ + V D+NDN P+     +
Sbjct: 413 -------------------TVIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSPRVF 451

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 60.8 bits (148), Expect = 3e-12
 Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 29/121 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++     +       + Y I     +      F I+ ETG +     LDR+    E + 
Sbjct: 25  KRLVQIKSNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTRPLDRE----EYDK 79

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
           Y+   +   A+  +    E+ + IT                  I V D NDN P F +  
Sbjct: 80  YV---LSSHAVSENGSPVEEPMEIT------------------INVIDQNDNRPKFTQDV 118

Query: 118 Y 118
           +
Sbjct: 119 F 119

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 54.2 bits (131), Expect = 5e-10
 Identities = 11/112 (9%), Positives = 23/112 (20%), Gaps = 28/112 (25%)

Query: 2   QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
            +  +D D P N    +  +     +    +     G    L    +             
Sbjct: 462 VLTISDADIPPNTYPYKVSLSHGS-DLTWKAELDSKGTSMLLSPTQQ------------- 507

Query: 62  DIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
                        ++ +  I V+  D           +  TV          
Sbjct: 508 ------------LKKGDYSIYVLLSDAQNNPQL--TVVNATVCSCEGKAIKC 545

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 Length = 546

 Score = 51.2 bits (123), Expect = 6e-09
 Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 34/125 (27%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSI----DKETGIVKTLYALDRDDPEREKE 56
            ++  TD+D P          I+   E   F+I    +   GI+ T   LD         
Sbjct: 246 QRLSVTDLDMPGTPAWQAVYKIRVN-EGGFFNITTDPESNQGILTTAKGLDF-------- 296

Query: 57  IYITTDIRVQALDRDDPEREKEIYITVIAED---NGTPQLSDACTMKITVEDINDNEPMF 113
                            E  K+  + +  E+      P  +   T+ +TVED+N+  P F
Sbjct: 297 -----------------ELRKQYVLQITVENAEPFSVPLPTSTATVTVTVEDVNEA-PFF 338

Query: 114 DRVQY 118
                
Sbjct: 339 VPAVS 343

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 75.8 bits (187), Expect = 1e-17
 Identities = 34/123 (27%), Positives = 48/123 (39%), Gaps = 29/123 (23%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
           M+V ATD D   N     I Y I+        +  F+++++TG++  L            
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL------------ 175

Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
                       LDR   E      + V A D     LS      ITV+DINDN P+F+ 
Sbjct: 176 ---------TSGLDR---ESYPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNP 223

Query: 116 VQY 118
             Y
Sbjct: 224 STY 226

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 27/118 (22%), Positives = 44/118 (37%), Gaps = 23/118 (19%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
               A + D   +   I YRI +         I+ ETG + T   +DR+D E  K     
Sbjct: 352 TSYTAREPDTFMDQ-KITYRIWRDTAN--WLEINPETGAIFTRAEMDREDAEHVKNSTYV 408

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                                 +IA D+G+P  +   T+ + + D+NDN P+ +    
Sbjct: 409 --------------------ALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRNM 446

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 63.1 bits (154), Expect = 4e-13
 Identities = 12/116 (10%), Positives = 20/116 (17%), Gaps = 27/116 (23%)

Query: 3   VHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTD 62
           +   D D P N       +            +        L                   
Sbjct: 458 ITILDPDLPPNTSPFTAELTHGASVNWTIEYNDAAQESLILQPRKD-------------- 503

Query: 63  IRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                          E  I +   DN         T+ + V D         +  +
Sbjct: 504 -----------LEIGEYKIHLKLADNQNKDQV--TTLDVHVCDCEGTVNNCMKAHH 546

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 29/121 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK---FSIDKETGIVKTLYALDRDDPEREKEI 57
             +     +       + Y I     ++     F I++ETG +K    LDR+        
Sbjct: 19  KNLVQIKSNRDKET-KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDRE----AIAK 73

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
           YI   +   A+  +    E  + I                   ITV D NDN P F +  
Sbjct: 74  YI---LYSHAVSSNGEAVEDPMEIV------------------ITVTDQNDNRPEFTQEV 112

Query: 118 Y 118
           +
Sbjct: 113 F 113

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus} Length = 550

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 23/124 (18%), Positives = 43/124 (34%), Gaps = 32/124 (25%)

Query: 1   MQVHATDVDPPSNGGT-IQYRIIKAPGERAKFSIDKET--GIVKTLYALDRDDPEREKEI 57
             +  TD D P+       Y ++  P ++     D  T  GI+KT               
Sbjct: 240 ATLKVTDDDAPNTPAWKAVYTVVNDPDQQFVVVTDPTTNDGILKT--------------- 284

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGT---PQLSDACTMKITVEDINDNEPMFD 114
                   + LD    E +++  + V  E+        +    T+ + V D+N+  P+F 
Sbjct: 285 -------AKGLDF---EAKQQYILHVRVENEEPFEGSLVPSTATVTVDVVDVNEA-PIFM 333

Query: 115 RVQY 118
             + 
Sbjct: 334 PAER 337

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A Length = 110

 Score = 70.8 bits (174), Expect = 2e-17
 Identities = 19/116 (16%), Positives = 36/116 (31%), Gaps = 29/116 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++         N  +++Y +     +      F I+  +G +     LDR+        
Sbjct: 21  QELVRIRSGRDKNL-SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDRE----LIAR 75

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
           +                      +   A D    Q+ +   + I V D+NDN P F
Sbjct: 76  FH---------------------LRAHAVDINGNQVENPIDIVINVIDMNDNRPEF 110

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 73.0 bits (179), Expect = 4e-17
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 29/114 (25%)

Query: 2   QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
                         ++ YR++   GE   F    ++  V T +ALDR             
Sbjct: 160 FRLLPVQFLCPQI-SVAYRLL--EGEGLPFRSAPDSLEVSTRWALDR------------- 203

Query: 62  DIRVQALDRDDPEREKEIYITVIA-EDNGTPQLSDACTMKITVEDINDNEPMFD 114
                       E+ ++  +  +     G  +        +TV D +D+ P F+
Sbjct: 204 ------------EQREKYELVAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE 245

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens} Length = 246

 Score = 63.4 bits (154), Expect = 1e-13
 Identities = 15/119 (12%), Positives = 33/119 (27%), Gaps = 16/119 (13%)

Query: 1   MQVHATDVDPPSNG-GTIQYRIIK----APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
           + VHA    P       +   +         E     I ++TG++    +LD    E+  
Sbjct: 23  LYVHALRDAPEEVPSFRLGQHLYGTYRTRLHENNWIRIQEDTGLLYLQRSLDHSSWEK-- 80

Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD 114
                    +   +R  P     + + +        +       ++     N + P   
Sbjct: 81  ---------LSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACS 130

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 24/118 (20%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
             + A D D       I+Y  +  P       ID   G + T+  LDR+ P  +  IY  
Sbjct: 358 TTLTAQDPDRYMQQ-NIRYTKLSDPANW--LKIDPVNGQITTIAVLDRESPNVKNNIY-- 412

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                                T +A DNG P +S   T++I + DINDN P     + 
Sbjct: 413 -------------------NATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEA 451

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 69.7 bits (171), Expect = 2e-15
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 31/125 (24%)

Query: 1   MQVHATDVDPPSNG-GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
           M V A D D P+   G ++YRI+    +      F+I+ ETG + T+             
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV------------- 174

Query: 57  IYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ---LSDACTMKITVEDINDNEPMF 113
                      LDR   E+ ++  + + A D        LS+  T  ITV D+NDN P F
Sbjct: 175 --------AAGLDR---EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTDVNDNPPEF 223

Query: 114 DRVQY 118
             + +
Sbjct: 224 TAMTF 228

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 65.1 bits (159), Expect = 9e-14
 Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 27/120 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPG-ERAKFSIDKETG-IVKTLYALDRDDPEREKEIY 58
           + + A D D   N G   + +  +P   +  ++I++  G   +    +   +        
Sbjct: 462 INITALDYDIDPNAGPFAFDLPLSPVTIKRNWTINRLNGDFAQLNLKIKFLEA------- 514

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                                 + +I  D+G P  S+   +++ V   + N    D   +
Sbjct: 515 ------------------GIYEVPIIITDSGNPPKSNISILRVKVCQCDSNGDCTDVHHH 556

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 29/121 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++     D   N  +++Y +     ++     F I+  +G                 ++
Sbjct: 19  QELVRIRSDRDKNL-SLRYSVTGPGADQPPTGIFIINPISG-----------------QL 60

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
            +T     + LDR   E     ++   A D    Q+ +   + I V D+NDN P F    
Sbjct: 61  SVT-----KPLDR---ELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112

Query: 118 Y 118
           +
Sbjct: 113 W 113

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus} Length = 559

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 24/123 (19%), Positives = 40/123 (32%), Gaps = 26/123 (21%)

Query: 1   MQVHATDVDPPSNGG-TIQYRIIKAPGERAKFSIDKE----TGIVKTLYALDRDDPEREK 55
             +  TD D P        YRI        +F+I  +     G+V  +  +D    E  +
Sbjct: 242 ANLTVTDKDQPHTPAWNAAYRISGGD-PTGRFAILTDPNSNDGLVTVVKPIDF---ETNR 297

Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
              +T    V A ++    +                      T+ +TV D+N+N P F  
Sbjct: 298 MFVLT----VAAENQVPLAK------------GIQHPPQSTATVSVTVIDVNEN-PYFAP 340

Query: 116 VQY 118
              
Sbjct: 341 NPK 343

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 70.5 bits (173), Expect = 2e-16
 Identities = 21/121 (17%), Positives = 39/121 (32%), Gaps = 29/121 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++     D   N  +++Y +     ++     F I+  +G +     LDR         
Sbjct: 19  QELVRIRSDRDKNL-SLRYSVTGPGADQPPTGIFIINPISGQLSVTKPLDR--------- 68

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
                           E     ++   A D    Q+ +   + I V D+NDN P F    
Sbjct: 69  ----------------ELIARFHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQV 112

Query: 118 Y 118
           +
Sbjct: 113 W 113

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A Length = 215

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 31/112 (27%)

Query: 1   MQVHATDVDPPSNG-GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREKE 56
           M V A D D P+   G ++YRI+    +      F+I+ ETG + T+             
Sbjct: 128 MTVTAIDADDPNALNGMLRYRILSQAPSTPSPNMFTINNETGDIITV------------- 174

Query: 57  IYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ---LSDACTMKITVED 105
                      LDR   E+ ++  + + A D        LS+  T  ITV D
Sbjct: 175 --------AAGLDR---EKVQQYTLIIQATDMEGNPTYGLSNTATAVITVTD 215

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 68.3 bits (168), Expect = 2e-16
 Identities = 29/112 (25%), Positives = 47/112 (41%), Gaps = 27/112 (24%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGE-RAKFSIDKETGIVKTLYALDRDDPEREKEIYI 59
           +Q+ A D+D   NG  I+Y    A    R    +D+ +G +  L+ +DR           
Sbjct: 34  LQLRAADLDVGVNG-QIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR----------- 81

Query: 60  TTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEP 111
                         E   ++  TV+A D G P  +D  T+ + ++D NDN P
Sbjct: 82  --------------EEVNQLRFTVMARDRGQPPKTDKATVVLNIKDENDNVP 119

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 71.6 bits (176), Expect = 3e-16
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 31/122 (25%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
             V ATD D P  G    + Y I++       FSI+ ET I+KT                
Sbjct: 126 TNVTATDADDPVYGNSAKLVYSILEGQP---YFSIEPETAIIKTA--------------- 167

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNG--TPQLSDACTMKITVEDINDNEPMFDRV 116
                 +  +DR   E ++E  + + A+D G  +  LS   T+ +T+ D+NDN P F + 
Sbjct: 168 ------LPNMDR---EAKEEYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQS 218

Query: 117 QY 118
            Y
Sbjct: 219 LY 220

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 68.1 bits (167), Expect = 5e-15
 Identities = 30/118 (25%), Positives = 41/118 (34%), Gaps = 27/118 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +    TD+D       I+Y +    G    F I+  TG +  +  LDR+    EK  Y  
Sbjct: 21  VGRLHTDLD--PGSKKIKYILSG-DGAGTIFQINDITGDIHAIKRLDRE----EKAEYT- 72

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             +  QA+D                       L       I V+DINDN P F    Y
Sbjct: 73  --LTAQAVDF-----------------ETNKPLEPPSEFIIKVQDINDNAPEFLNGPY 111

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus} Length = 322

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 25/108 (23%), Positives = 37/108 (34%), Gaps = 24/108 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSI----DKETGIVKTLYALDRDDPEREKE 56
            +V A D D   N     Y II      A F I      + G+++    LD    E +K 
Sbjct: 235 GRVKANDQDIGENA-QSSYDIID-GDGTALFEITSDAQAQDGVIRLRKPLDF---ETKKS 289

Query: 57  IYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVE 104
                 ++V+A +     R            +      D  T+KI VE
Sbjct: 290 Y----TLKVEAANIHIDPR-----------FSSRGPFKDTATVKIVVE 322

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 70.1 bits (172), Expect = 4e-16
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 27/118 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            +V  +D    S    +  + +    +   F I++ TG V     LDR            
Sbjct: 23  GKVVDSDRPEGSKF-RLTGKGVDQDPKG-TFRINENTGSVSVTRTLDR------------ 68

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                        E      + V   D     L     +++ V D NDN P+F    Y
Sbjct: 69  -------------ETIATYQLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPY 113

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A Length = 218

 Score = 53.2 bits (128), Expect = 7e-10
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 28/112 (25%)

Query: 1   MQVHATDVDPPSNG-GTIQYRIIKAPGERAK---FSIDKETGIVKTLYALDRDDPEREKE 56
           M++ A D D P+     ++Y I +   ++     F ID E G                  
Sbjct: 128 MRMTAFDADDPATDNALLRYNIRQQTPDKPSPNMFYIDPEKGD----------------- 170

Query: 57  IYITTDIRVQALDRDDPEREKEIY-ITVIAEDNG--TPQLSDACTMKITVED 105
             I T +    LDR+    E   Y + + A+D       L+   T  I ++D
Sbjct: 171 --IVTVVSPALLDRE--TLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD 218

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 123

 Score = 66.2 bits (162), Expect = 2e-15
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 30/118 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGER---AKFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++H +D+        I Y+             F  +K+TG +     LDR+    E   
Sbjct: 32  AKIH-SDLAEERGL-KITYKYTGKGITEPPFGIFVFNKDTGELNVTSILDRE----ETPF 85

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
           ++                     +T  A D     +     ++I V DINDNEP+F +
Sbjct: 86  FL---------------------LTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQ 122

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 29/119 (24%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +    +D+D  S  G I+Y +    G    F ID ++G +     LDR            
Sbjct: 22  VGRLHSDID--SGDGNIKYIL-SGEGAGTIFVIDDKSGNIHATKTLDR------------ 66

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQ-LSDACTMKITVEDINDNEPMFDRVQY 118
                        E   +  +   A D  T + L       + V+DINDN P F    Y
Sbjct: 67  -------------EERAQYTLMAQAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIY 112

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus} Length = 215

 Score = 68.1 bits (167), Expect = 2e-15
 Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 31/115 (26%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
           +QV A+D D P+ G    + Y I++       FS++ +TGI++T                
Sbjct: 127 IQVTASDADDPTYGNSAKLVYSILEGQP---YFSVEAQTGIIRT---------------- 167

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNG--TPQLSDACTMKITVEDINDNEP 111
                 +  +DR   E ++E ++ + A+D G     LS    + IT+ D   ++ 
Sbjct: 168 -----ALPNMDR---EAKEEYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDD 214

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 67.4 bits (165), Expect = 4e-15
 Identities = 23/121 (19%), Positives = 38/121 (31%), Gaps = 29/121 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
             +     +       + Y I     ++     F I++ETG +K    LDR         
Sbjct: 19  KNLVQIKSNRDKET-KVFYSITGQGADKPPVGVFIIERETGWLKVTQPLDR--------- 68

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ 117
                           E   +  +   A  +    + D   + ITV D NDN P F +  
Sbjct: 69  ----------------EAIAKYILYSHAVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEV 112

Query: 118 Y 118
           +
Sbjct: 113 F 113

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A Length = 213

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 27/110 (24%), Positives = 39/110 (35%), Gaps = 29/110 (26%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIK---APGERAKFSIDKETGIVKTLYALDRDDPEREK 55
           M+V ATD D   N     I Y I+        +  F+++++TG++  L            
Sbjct: 128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVL------------ 175

Query: 56  EIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                       LDR   E      + V A D     LS      ITV+D
Sbjct: 176 ---------TSGLDR---ESYPTYTLVVQAADLQGEGLSTTAKAVITVKD 213

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 66.9 bits (164), Expect = 4e-15
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 29/119 (24%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +    +D D     G+++Y +    G    F I++ TG ++    LDR            
Sbjct: 21  VGKLHSDQDRGD--GSLKYILS-GDGAGDLFIINENTGDIQATKRLDR------------ 65

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGT-PQLSDACTMKITVEDINDNEPMFDRVQY 118
                        E +    +   A +  T   +       I + DINDNEP+F +  Y
Sbjct: 66  -------------EEKPVYILRAQAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY 111

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus} Length = 207

 Score = 55.0 bits (133), Expect = 1e-10
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 31/109 (28%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
           +QV ATD D P+ G    + Y I++       FS++ ETGI+KT                
Sbjct: 126 VQVTATDADDPTYGNSAKVVYSILQGQP---YFSVESETGIIKT---------------- 166

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQ--LSDACTMKITVED 105
                 +  +DR   E  ++  + + A+D G     LS   T+ IT+ D
Sbjct: 167 -----ALLNMDR---ENREQYQVVIQAKDMGGQMGGLSGTTTVNITLTD 207

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 65.8 bits (161), Expect = 1e-14
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 30/118 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            ++ ++  +         Y I         F +    G +     LDR+    +K  Y  
Sbjct: 22  GKLTSSVGN-----KNAMYIIE-GESANTIFKVQGYDGDIYAFERLDRE----KKAEYE- 70

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
             +    +DR                      L       I V DINDN P+F +  +
Sbjct: 71  --LTAHIIDR-----------------RNNRSLEPPSKFIIKVSDINDNAPIFVQKIF 109

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus} Length = 203

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 26/108 (24%), Positives = 36/108 (33%), Gaps = 31/108 (28%)

Query: 1   MQVHATDVDPPSNG--GTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIY 58
            +V A D D P+     T+ Y+IIK       F++D    I      LDR          
Sbjct: 124 TKVTAEDADDPTVAGHATVTYQIIKGNE---YFTVDDSGVIFTARADLDR---------- 170

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDN-GTPQLSDACTMKITVED 105
                          E +    I V A+D  G    S   T+ I + D
Sbjct: 171 ---------------ESQSAYEIIVKAKDALGLTGESSTATVIIRLTD 203

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 66.6 bits (163), Expect = 2e-14
 Identities = 20/120 (16%), Positives = 38/120 (31%), Gaps = 27/120 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA-------KFSIDKETGIVKTLYALDRDDPER 53
            ++  T+ D  + G    +++ K   +          +   +  G V+     D ++   
Sbjct: 7   KRIEFTEADGDTEG-KSVFQLEKETDKETFKIRDDNPWVTVETNGAVRVKKKWDYEELGP 65

Query: 54  EKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMF 113
           EK I                       I      N   + +D   + I V+D+ND  P F
Sbjct: 66  EKTIDFWV-------------------IITNMGHNAGIKYTDNQRVIILVKDVNDEPPYF 106

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 65.5 bits (160), Expect = 5e-14
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 34/122 (27%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
             + A D D   N   I Y I+       +F +D+ +G+V+T                  
Sbjct: 128 FTLQARDPDTDHN---IHYFIV-RDRTGGRFEVDERSGVVRTRGTDLF------------ 171

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTP----QLSDACTMKITVEDINDNEPMFDRV 116
                        + + E  + V AED        +       ++++       P F   
Sbjct: 172 -------------QLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMP 217

Query: 117 QY 118
            Y
Sbjct: 218 SY 219

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A Length = 316

 Score = 64.3 bits (157), Expect = 1e-13
 Identities = 21/109 (19%), Positives = 36/109 (33%), Gaps = 27/109 (24%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + + A           I+Y +         F+I   +GIVK                   
Sbjct: 234 ISIKAKSFA----DREIRYTLKAQGQGAGTFNIGPTSGIVKLA----------------- 272

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDN 109
                + LD +D  +     + V A ++     S +  + I V D+NDN
Sbjct: 273 -----KELDFEDLRQPHVYSLIVTATEDS-GGFSTSVDLTIRVTDVNDN 315

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 26/118 (22%), Positives = 43/118 (36%), Gaps = 27/118 (22%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + + A       +   I+Y +         F+I   +GIVK    LD +D  R+  +Y  
Sbjct: 239 ISIKAKSFA---DRE-IRYTLKAQGQGAGTFNIGPTSGIVKLAKELDFED-LRQPHVY-- 291

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                               + V A +  +   S +  + I V D+NDN P F+   Y
Sbjct: 292 -------------------SLIVTATE-DSGGFSTSVDLTIRVTDVNDNAPKFELPDY 329

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 63.9 bits (156), Expect = 2e-13
 Identities = 18/117 (15%), Positives = 40/117 (34%), Gaps = 19/117 (16%)

Query: 2   QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
           ++  T+ D  + G    +++ +   ++  F I  +       +     +        +  
Sbjct: 13  RIEFTEADGDTEG-KSVFQL-EKETDKETFKIRDDNP-----WVTVETNGA------VRV 59

Query: 62  DIRVQALDRDDPEREKE---IYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR 115
               +  D ++   EK      I      N   + +D   + I V+D+ND  P F  
Sbjct: 60  K---KKWDYEELGPEKTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFIN 113

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 59.6 bits (145), Expect = 7e-12
 Identities = 20/122 (16%), Positives = 37/122 (30%), Gaps = 34/122 (27%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
             + A D D   N   I Y I++      +F +D+ +G+V+T                  
Sbjct: 133 FTLQARDPDTDHN---IHYFIVR-DRTGGRFEVDERSGVVRTRGTDLF------------ 176

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTP----QLSDACTMKITVEDINDNEPMFDRV 116
                        + + E  + V AED        +       ++++       P F   
Sbjct: 177 -------------QLDMEYVLYVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMP 222

Query: 117 QY 118
            Y
Sbjct: 223 SY 224

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster} Length = 419

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 31/104 (29%)

Query: 2   QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
           +V A D D  SN   I+Y +         F++D   GI+     LD    +     Y   
Sbjct: 346 RVKAMDSDSGSNA-EIEYLVSDDH-----FAVD-SNGIIVNNKQLDA---DNNNAYY--- 392

Query: 62  DIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                                V A+D G P  S   T+++  ++
Sbjct: 393 ------------------EFIVTAKDKGEPPKSGVATVRVYTKN 418

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 64.2 bits (157), Expect = 6e-14
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 33/117 (28%)

Query: 2   QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITT 61
           Q+ A D+D       + + +      R  F+++ +TG+V     LDR             
Sbjct: 31  QLLARDMD----NDPLVFGVSGEEASR-FFAVEPDTGVVWLRQPLDR------------- 72

Query: 62  DIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY 118
                       E + E  +     D+          + I V D+NDN P F    Y
Sbjct: 73  ------------ETKSEFTVEFSVSDHQGV---ITRKVNIQVGDVNDNAPTFHNQPY 114

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 2wcp_A 2whv_A 2wd0_A 2wbx_A Length = 210

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 30/110 (27%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
             V+ATD D  + G ++ Y           F+ID   GIV  +  LD             
Sbjct: 129 FIVNATDPDLGAGG-SVLYSF---QPPSPFFAIDSARGIVTVIQELDY------------ 172

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNG-TPQLSDACTMKITVEDINDN 109
                        E  +   +TV A D   T  LS    + I + D+ D 
Sbjct: 173 -------------EVTQAYQLTVNATDQDKTRPLSTLANLAIIITDMQDM 209

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A Length = 99

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 18/105 (17%), Positives = 32/105 (30%), Gaps = 27/105 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            +V  +D  P S    +  + +    +   F I++ +G V    ALDR+        Y  
Sbjct: 22  GRVVVSDRIPGSKI-KLYGKGVDQEPK-GIFKINENSGEVSVTKALDRE----AIPSYQ- 74

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                               + V   D     +     ++I V D
Sbjct: 75  --------------------LQVETTDENGKTIEGPVDLEILVID 99

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus} Length = 100

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 27/105 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            +V  +D    S    +  + +    +   F I++ TG V     LDR            
Sbjct: 23  GKVVDSDRPEGSKF-RLTGKGVDQDPK-GTFRINENTGSVSVTRTLDR------------ 68

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                        E      + V   D     L     +++ V D
Sbjct: 69  -------------ETIATYQLYVETTDASGKTLEGPVPLEVIVID 100

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus} Length = 99

 Score = 50.1 bits (120), Expect = 1e-09
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 27/105 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           +    +D+D     G+I+Y +    G    F+ID  TG +  +  LDR+    E+  Y  
Sbjct: 22  VGKLHSDMD--RGDGSIKYIL-SGEGAGIVFTIDDTTGDIHAIQRLDRE----ERSQYT- 73

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
             +R QALDR                      +       I ++D
Sbjct: 74  --LRAQALDRRTG-----------------RPMEPESEFIIKIQD 99

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus} Length = 99

 Score = 49.3 bits (118), Expect = 4e-09
 Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 27/105 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
            +V  ++    +    +  + +    +   F I++ +G V     LDR            
Sbjct: 22  GKVIRSEGTEGAKF-RLSGKGVDQDPKG-IFRINEISGDVSVTRPLDR------------ 67

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                        E      + V   D     +     + I+V D
Sbjct: 68  -------------EAIANYELEVEVTDLSGKIIDGPVRLDISVID 99

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A Length = 98

 Score = 49.0 bits (117), Expect = 4e-09
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 25/105 (23%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYIT 60
           + V     D       I+Y +    G    F I+  TG +  +  LDR+    EK  Y  
Sbjct: 19  ILVGRLHTDLDPGSKKIKYIL-SGDGAGTIFQINDITGDIHAIKRLDRE----EKAEYT- 72

Query: 61  TDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
             +  QA+D                       L       I V+D
Sbjct: 73  --LTAQAVDF-----------------ETNKPLEPPSEFIIKVQD 98

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B Length = 105

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 29/108 (26%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERA---KFSIDKETGIVKTLYALDRDDPEREKEI 57
             +     +    G  + Y I     +      F I++ETG +K    LDR+        
Sbjct: 23  KNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRE----RIAT 77

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
           Y                      +   A  +    + D   + ITV D
Sbjct: 78  YT---------------------LFSHAVSSNGNAVEDPMEILITVTD 104

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 114

 Score = 46.7 bits (112), Expect = 4e-08
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 30/109 (27%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
           +Q+HATD D  SN   I+Y          K  F+++  TG++    +LDR+    E  I+
Sbjct: 34  IQLHATDADIGSNA-EIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDRE----ETAIH 88

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDIN 107
               + V A D                            T+ I V D+N
Sbjct: 89  ---KVTVLASDG--------------------SSTPARATVTINVTDVN 114

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
2yqg_A	123	Desmoglein-2, HDGC; cadherin, structural genomics,	99.89
2yst_A	119	Protocadherin-7; BH-PCDH, beta-sandwich, structura	99.88
1ncg_A	110	N-cadherin; cell adhesion protein; 2.10A {Mus musc	99.88
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.86
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.84
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.83
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	99.81
2a4e_A	215	Cadherin-11; dimer, calcium binding, cell adhesion	99.81
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.81
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	99.8
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.8
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.8
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	99.8
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.8
1wyj_A	125	Protocadherin beta 14; SS bond, structural genomic	99.78
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	99.77
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	99.77
2ee0_A	114	Protocadherin-9; Ca domain, structural genomics, N	99.77
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.77
3q2v_A	550	Cadherin-1; cell adhesion, calcium binding; HET: M	99.76
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	99.76
1zvn_A	99	Mn-cadherin; strand dimer, ----; 2.16A {Gallus gal	99.76
1zxk_A	98	Cadherin-8; strand dimer, cell adhesion; 2.00A {Mu	99.75
1l3w_A	546	EP-cadherin, C-cadherin; cell adhesion, calcium bi	99.75
3q2w_A	559	Cadherin-2; cell adhesion, calcium binding; HET: M	99.75
2x2u_A	246	Proto-oncogene tyrosine-protein kinase receptor RE	99.75
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	99.75
3mvs_A	210	Cadherin-23, otocadherin; adhesion, extracellular	99.74
2omz_B	105	Epithelial-cadherin; leucine-rich-repeat, nvasion	99.73
3ubf_A	316	Neural-cadherin; cell adhesion; 2.50A {Drosophila	99.73
2a62_A	322	Cadherin-8; extracellular domain, homodimer, calci	99.73
3ubh_A	419	Neural-cadherin; cell adhesion; 2.70A {Drosophila	99.72
1q55_A	880	EP-cadherin, C-cadherin; trans interaction, desmos	99.72
3k6i_A	99	T-cadherin; cell adhesion, alternative splicing, c	99.72
3k6f_A	100	T-cadherin; cell adhesion, calcium, cell membrane,	99.72
3k6d_A	99	T-cadherin; cell adhesion; 1.80A {Xenopus laevis}	99.7
3qrb_A	213	Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus mu	99.6
3lnd_A	207	CDH6 protein, cadherin 6; cell adhesion, cell memb	99.59
3ppe_A	203	Vascular endothelial cadherin; extracellular cadhe	99.59
3k5r_A	218	Cadherin 13; mouse, structural protein; 2.00A {Mus	99.58
2qvi_A	215	Cadherin-2; beta barrel, strand SWAP, domain SWAP,	99.58
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.5
4apx_B	242	Protocadherin-15, otocadherin; cell adhesion, hear	99.49
1wuz_A	103	Pcdha4 protein, CNR-EC1; cadherin, heteronuclear p	99.33
2yrl_A	102	KIAA1837 protein; PKD domain, NPPSFA, national pro	85.0
2yhg_A	437	SDE_182CT, cellulose-binding protein; hydrolase, g	84.91

>2yqg_A Desmoglein-2, HDGC; cadherin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=6.6e-24  Score=139.41  Aligned_cols=88  Identities=28%  Similarity=0.417  Sum_probs=76.9

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCC---CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAP---GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~---~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +|. +|+|.| .|+.|+|+|...+   +...+|.||+.||.|++.+.                      ||||   .+..
T Consensus        33 ~v~-~D~D~g-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~   85 (123)
T 2yqg_A           33 KIH-SDLAEE-RGLKITYKYTGKGITEPPFGIFVFNKDTGELNVTSI----------------------LDRE---ETPF   85 (123)
T ss_dssp             CCC-CHHHHH-HTCCCEEEEEEBTTTBSSCSSEEEETTTTEEEECSC----------------------CBTT---TBSE
T ss_pred             EEE-ECCCCC-CCceEEEEEecCCCCCCcCCCEEEeCCcCEEEECcc----------------------cCcc---cCce
Confidence            345 588988 6899999999753   22468999999999999999                      7887   6679


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCC
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRV  116 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~  116 (118)
                      |.|.|.|+|.|.|++++++.|.|+|.|+|||+|+|.++
T Consensus        86 y~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F~~~  123 (123)
T 2yqg_A           86 FLLTGYALDARGNNVEKPLELRIKVLDINDNEPVFTQD  123 (123)
T ss_dssp             EEEEEEEECTTCCEEEEEECCEEEEECTTCCCCCCCCC
T ss_pred             EEEEEEEEECCCCceEEEEEEEEEEEEcCCCCCEeCCC
Confidence            99999999999999999999999999999999999874

>2yst_A Protocadherin-7; BH-PCDH, beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.88  E-value=2.4e-23  Score=135.66  Aligned_cols=84  Identities=32%  Similarity=0.534  Sum_probs=75.1

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCC-CccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGE-RAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~-~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      +|.|+|+|.| .|++|+|+|...... ..+|.||+.||.|++.+.                      ||||   ....|.
T Consensus        35 ~v~A~D~D~g-~n~~i~Y~i~~~~~~~~~~F~Id~~tG~I~~~~~----------------------LD~E---~~~~y~   88 (119)
T 2yst_A           35 QLRAADLDVG-VNGQIEYVFGAATESVRRLLRLDETSGWLSVLHR----------------------IDRE---EVNQLR   88 (119)
T ss_dssp             ECCCCCSSSS-CCSCCCCEECSCCTTHHHHEEECTTTCEEEECSC----------------------CCTT---TCSEEE
T ss_pred             EEEEEeCCCC-CCCeEEEEEecCCCccccEEEEeCCceEEEECcc----------------------CCcc---cCCEEE
Confidence            6789999999 799999999854321 358999999999999998                      7887   567999


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEP  111 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P  111 (118)
                      |.|.|+|.|.|+++++++|.|+|.|+|||+|
T Consensus        89 l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P  119 (119)
T 2yst_A           89 FTVMARDRGQPPKTDKATVVLNIKDENDNVP  119 (119)
T ss_dssp             EEEEECCSBTTBCCEEEEEEEEEECSTTCCC
T ss_pred             EEEEEEECCCCCcEEEEEEEEEEEeccCCCC
Confidence            9999999999999999999999999999998

>1ncg_A N-cadherin; cell adhesion protein; 2.10A {Mus musculus} SCOP: b.1.6.1 PDB: 1nch_A 1nci_A

Probab=99.88  E-value=7.1e-23  Score=132.05  Aligned_cols=85  Identities=21%  Similarity=0.281  Sum_probs=65.9

Q ss_pred             EEEEeCCCCCCCCcEEEEEEeCC---CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceE
Q psy9968           3 VHATDVDPPSNGGTIQYRIIKAP---GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEI   79 (118)
Q Consensus         3 v~A~D~D~~~~n~~i~y~i~~~~---~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~   79 (118)
                      |.+.|.|.+ .|+.|+|+|...+   +...+|.||+.||.|++.++                      ||||   ....|
T Consensus        23 v~~vd~D~g-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y   76 (110)
T 1ncg_A           23 LVRIRSGRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----------------------LDRE---LIARF   76 (110)
T ss_dssp             EEECCCGGG-GGSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCCEE
T ss_pred             EEEEeCCCC-CCCEEEEEEeCCCCCCCcCCEEEEECCCCEEEECCc----------------------CCcc---cCCeE
Confidence            445588888 6899999999632   23468999999999999999                      7887   66799


Q ss_pred             EEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCee
Q psy9968          80 YITVIAEDNGTPQLSDACTMKITVEDINDNEPMF  113 (118)
Q Consensus        80 ~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F  113 (118)
                      .|.|.|+|.|.|++++++.|.|+|.|+|||+|+|
T Consensus        77 ~l~V~A~D~g~p~~~~~~~v~I~V~DvNDn~P~F  110 (110)
T 1ncg_A           77 HLRAHAVDINGNQVENPIDIVINVIDMNDNRPEF  110 (110)
T ss_dssp             EEEEEEECTTSCBCSCCEEEEEEEC---------
T ss_pred             EEEEEEEECCCCceeeEEEEEEEEEECCCCCCCC
Confidence            9999999999999999999999999999999998

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.86  E-value=3.9e-21  Score=136.62  Aligned_cols=91  Identities=21%  Similarity=0.285  Sum_probs=80.1

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCC---CCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPG---ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +|.|.|.|.+ .|+.|+|+|...+.   ...+|.|++.||.|++.+.                      ||||   ....
T Consensus        20 ~v~~~~~D~~-~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~   73 (215)
T 2qvi_A           20 ELVRIRSDRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----------------------LDRE---LIAR   73 (215)
T ss_dssp             EEEECCCGGG-GTSCEEEEEESTTSSSTTCSSEEECTTTCEEEECSC----------------------CCTT---TCSE
T ss_pred             EEEEEeCCCC-CCceEEEEEECCCCCCCCCCcEEEeCCccEEEECcc----------------------cCcc---cCCe
Confidence            5778899988 68999999996432   2368999999999999998                      7887   5679


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |.|.|.|+|.|.|++++++.|.|+|.|+|||+|+|.+..|
T Consensus        74 y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  113 (215)
T 2qvi_A           74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW  113 (215)
T ss_dssp             EEEEEEEEETTTCCCEEEEEEEEEEECCCCCCCBCSSSEE
T ss_pred             EEEEEEEEECCCCceeeeEEEEEEEeECCCCCCcccCcee
Confidence            9999999999999999999999999999999999998765

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.84  E-value=8.1e-22  Score=142.71  Aligned_cols=85  Identities=19%  Similarity=0.227  Sum_probs=74.1

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|.|+|+|.| .|++|+|+|....  ..+|.|++.||.|++.+.                      ||||   .+..|.|
T Consensus       160 ~v~A~D~D~g-~n~~i~Y~i~~~~--~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l  211 (246)
T 2x2u_A          160 FRLLPVQFLC-PQISVAYRLLEGE--GLPFRSAPDSLEVSTRWA----------------------LDRE---QREKYEL  211 (246)
T ss_dssp             CSCHHHHHHC-TTSCEEEEEESCT--TSSEECCTTCCEEEESSC----------------------BCTT---TCSEEEE
T ss_pred             EEEEEcCCCC-CCcEEEEEEccCC--CCCEEEECCcCEEEeCCc----------------------cCcc---ccceEEE
Confidence            4679999999 7999999999543  358999999999999999                      6887   6679999


Q ss_pred             EEEEEE-CCCCCCeeEEEEEEEEEeCCCCCCeeC
Q psy9968          82 TVIAED-NGTPQLSDACTMKITVEDINDNEPMFD  114 (118)
Q Consensus        82 ~v~a~D-~g~p~~s~~~~v~I~v~DvNDn~P~F~  114 (118)
                      .|.|+| .|+|+++++++|.|+|.|+|||+|+|.
T Consensus       212 ~V~A~d~dg~p~~ss~~~v~I~V~DvNDn~P~F~  245 (246)
T 2x2u_A          212 VAVCTVHAGAREEVVMVPFPVTVYDEDDSAPEFE  245 (246)
T ss_dssp             EEEEEEC---CCEEEEEEEEEEEECSSCCSCCCC
T ss_pred             EEEEEecCCCCcceEEEEEEEEEEEeCCCCCccC
Confidence            999998 567999999999999999999999996

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.83  E-value=2.1e-20  Score=132.96  Aligned_cols=87  Identities=29%  Similarity=0.446  Sum_probs=75.7

Q ss_pred             EEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEE
Q psy9968           4 HATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITV   83 (118)
Q Consensus         4 ~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v   83 (118)
                      .|+|+|.|  |+.|+|+|...+. ..+|.||+.+|.|++.+.                      ||||   ....|.|.|
T Consensus        25 va~D~D~g--n~~i~Y~l~~~~~-~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l~v   76 (215)
T 2a4e_A           25 LHSDIDSG--DGNIKYILSGEGA-GTIFVIDDKSGNIHATKT----------------------LDRE---ERAQYTLMA   76 (215)
T ss_dssp             CCCTTCCS--SSCEEEEEEETTB-TTTEEECTTTCEEEECSC----------------------CCTT---TCSEEEEEE
T ss_pred             EEECCCCC--CCeEEEEEECCCC-CCeEEEECCceEEEECCc----------------------cCCc---cCCEEEEEE
Confidence            37899988  5889999986432 358999999999999998                      7887   667999999


Q ss_pred             EEEECCC-CCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          84 IAEDNGT-PQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        84 ~a~D~g~-p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|+|.|. +++++++.|.|+|.|+|||+|+|.+..|
T Consensus        77 ~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  112 (215)
T 2a4e_A           77 QAVDRDTNRPLEPPSEFIVKVQDINDNPPEFLHEIY  112 (215)
T ss_dssp             EEEETTTCCEEEEEEEEEEEEECCCCCCCEESSSSE
T ss_pred             EEEECCCCCcccccEEEEEEEeeCCCCCCCccCCce
Confidence            9999985 6789999999999999999999998765

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=99.81  E-value=1.5e-19  Score=143.51  Aligned_cols=92  Identities=32%  Similarity=0.454  Sum_probs=79.4

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCC-CCcceEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDP-EREKEIY   80 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~-~~~~~~~   80 (118)
                      +|+|+|+|.| .|++|+|+|.....  .+|.||+.+|.|++.+.                      ||||.. .+...|.
T Consensus       359 ~v~A~D~D~g-~n~~i~Ysi~~~~~--~~f~Id~~tG~i~~~~~----------------------lDrE~~~~~~~~y~  413 (559)
T 3q2w_A          359 TLTAQDPDRY-MQQNIRYTKLSDPA--NWLKIDPVNGQITTIAV----------------------LDRESPNVKNNIYN  413 (559)
T ss_dssp             ECCEECSCSS-SCCCEEEEEEECTT--CCEEECTTTCEEEESSC----------------------CCSSSTTSCSSEEE
T ss_pred             EEEEECCCCC-CCCceEEEEccCCc--cceEecCCceEEEEccc----------------------cCcccccccCCEEE
Confidence            6789999999 78999999986543  58999999999999999                      566521 1337899


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |+|.|+|.|.|+++++++|.|+|.|+|||+|+|.+..|
T Consensus       414 l~V~A~D~g~p~~ss~~~v~I~V~DvNDn~P~f~~~~~  451 (559)
T 3q2w_A          414 ATFLASDNGIPPMSGTGTLQIYLLDINDNAPQVLPQEA  451 (559)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEECCSCCCCEESCTTC
T ss_pred             EEEEEEcCCCCcceEEEEEEEEEEEccCCCCcccCCce
Confidence            99999999999999999999999999999999986543

>2a4e_A Cadherin-11; dimer, calcium binding, cell adhesion; 3.20A {Mus musculus}

Probab=99.81  E-value=1.1e-19  Score=129.27  Aligned_cols=82  Identities=30%  Similarity=0.491  Sum_probs=66.5

Q ss_pred             EEEEEeCCC---CCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCCcc
Q psy9968           2 QVHATDVDP---PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPEREK   77 (118)
Q Consensus         2 ~v~A~D~D~---~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~   77 (118)
                      +|+|+|+|.   | .|++|+|+|..+.   .+|.|++.||.|++. +.                      ||||   .+.
T Consensus       128 ~v~A~D~D~~~~G-~n~~i~Y~i~~~~---~~F~Id~~tG~I~~~~~~----------------------LD~E---~~~  178 (215)
T 2a4e_A          128 QVTASDADDPTYG-NSAKLVYSILEGQ---PYFSVEAQTGIIRTALPN----------------------MDRE---AKE  178 (215)
T ss_dssp             ECCEECSSCTTTC-SSSCCEEEEEEST---TTEEECTTTCEEEECSSC----------------------CCSS---SCS
T ss_pred             EEEEEECCCCCCC-CceEEEEEEeCCC---CcEEEeCCccEEEEcccC----------------------CCcc---cCC
Confidence            688999997   6 6899999999643   389999999999998 77                      7887   667


Q ss_pred             eEEEEEEEEECCCC--CCeeEEEEEEEEEeCCCCCCe
Q psy9968          78 EIYITVIAEDNGTP--QLSDACTMKITVEDINDNEPM  112 (118)
Q Consensus        78 ~~~l~v~a~D~g~p--~~s~~~~v~I~v~DvNDn~P~  112 (118)
                      .|.|.|.|+|.|.|  +++++++|.|+|.|+|||+|+
T Consensus       179 ~y~l~V~A~D~g~~~~~~s~~~~v~I~V~DvNDn~P~  215 (215)
T 2a4e_A          179 EYHVVIQAKDMGGHMGGLSGTTKVTITLTDDYKDDDK  215 (215)
T ss_dssp             EEEEEEEEETTTTCTTCCEEEEEEEEEEEC-------
T ss_pred             EEEEEEEEEECCCCCCCceeEEEEEEEEEECCCCCCC
Confidence            99999999999986  689999999999999999995

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.81  E-value=1.5e-19  Score=127.90  Aligned_cols=85  Identities=26%  Similarity=0.355  Sum_probs=72.9

Q ss_pred             CCCCCCCCcEEEEEEeCCC---CCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEE
Q psy9968           8 VDPPSNGGTIQYRIIKAPG---ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVI   84 (118)
Q Consensus         8 ~D~~~~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~   84 (118)
                      +|.+ .|++++|+|...+.   ...+|.|++.||.|++.++                      ||||   ....|.|.|.
T Consensus        26 aD~d-~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l~v~   79 (213)
T 3qrb_A           26 SNRD-KETKVFYSITGQGADKPPVGVFIIERETGWLKVTQP----------------------LDRE---AIAKYILYSH   79 (213)
T ss_dssp             CGGG-GTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCSEEEEEEE
T ss_pred             ECCC-CCceEEEEEEcCCCCCCCCCeEEEECCCCEEEECCc----------------------cCcc---cCceEEEEEE
Confidence            3444 47899999996332   2358999999999999999                      7887   6679999999


Q ss_pred             EEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          85 AEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        85 a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |+|.|+|++++++.|.|+|.|+|||+|+|.+..|
T Consensus        80 a~D~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  113 (213)
T 3qrb_A           80 AVSSNGEAVEDPMEIVITVTDQNDNRPEFTQEVF  113 (213)
T ss_dssp             EEETTSCBCSCCEEEEEEEECCSCCCCEESCSEE
T ss_pred             EEeCCCCcccceEEEEEEEEEccCCCCccCCCce
Confidence            9999999999999999999999999999998765

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=99.80  E-value=6.4e-20  Score=137.28  Aligned_cols=88  Identities=38%  Similarity=0.603  Sum_probs=77.4

Q ss_pred             EEEEEeCCC---CCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCCcc
Q psy9968           2 QVHATDVDP---PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPEREK   77 (118)
Q Consensus         2 ~v~A~D~D~---~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~   77 (118)
                      +|.|+|+|.   | .|++++|+|..+.   .+|.|++.+|.|++. +.                      ||||   ...
T Consensus       127 ~v~A~D~D~~~~G-~n~~i~Y~i~~~~---~~F~Id~~tG~i~~~~~~----------------------LD~E---~~~  177 (322)
T 2a62_A          127 NVTATDADDPVYG-NSAKLVYSILEGQ---PYFSIEPETAIIKTALPN----------------------MDRE---AKE  177 (322)
T ss_dssp             CCCCCBCSCSSST-TSSCEEEEEEECT---TTEEECTTTCCEEECSSC----------------------CCGG---GCS
T ss_pred             EEEEEeCCCCCCC-ccEEEEEEEccCC---CCEEEecCCCEEEecccC----------------------CCcc---cCC
Confidence            578999996   6 6899999998543   489999999999998 67                      7887   667


Q ss_pred             eEEEEEEEEECCCCC--CeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          78 EIYITVIAEDNGTPQ--LSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        78 ~~~l~v~a~D~g~p~--~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|.|.|+|.|.|+  ++++++|.|+|.|+|||+|+|.+..|
T Consensus       178 ~y~l~V~a~D~g~p~~~~s~~~~v~I~V~DvNDn~P~F~~~~y  220 (322)
T 2a62_A          178 EYLVVIQAKDMGGHSGGLSGTTTLTVTLTDVNDNPPKFAQSLY  220 (322)
T ss_dssp             EEEEEEEEEESCSSSSCCBCCEEEEEEECCCCCCCCCCSCSEE
T ss_pred             eEEEEEEEEECCCCCCCceeEEEEEEEEEecCCCCCeecCCCc
Confidence            999999999999874  89999999999999999999998765

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.80  E-value=5.5e-21  Score=134.92  Aligned_cols=87  Identities=25%  Similarity=0.412  Sum_probs=71.5

Q ss_pred             EEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEE
Q psy9968           4 HATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITV   83 (118)
Q Consensus         4 ~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v   83 (118)
                      .|+|+|.|  ++.++|+|...+ ...+|.|++.+|.|++.+.                      ||||   ....|.|.|
T Consensus        24 ~a~D~D~g--~~~i~Y~l~~~~-~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l~v   75 (207)
T 3lnd_A           24 LHSDQDRG--DGSLKYILSGDG-AGDLFIINENTGDIQATKR----------------------LDRE---EKPVYILRA   75 (207)
T ss_dssp             CCCTTCCS--STTBCCCCCSSS-BTTTEEECTTTCEEEECSC----------------------CCGG---GCCEEEC--
T ss_pred             EEeCCCCC--CceEEEEEECCC-CCCeEEEECCceEEEECCC----------------------cCcc---cCCEEEEEE
Confidence            38999998  478999998533 2358999999999999999                      7887   667999999


Q ss_pred             EEEECC-CCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          84 IAEDNG-TPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        84 ~a~D~g-~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|+|.| .+++++++.|.|+|.|+|||+|+|.+..|
T Consensus        76 ~a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  111 (207)
T 3lnd_A           76 QAVNRRTGRPVEPESEFIIKIHDINDNEPIFTKDVY  111 (207)
T ss_dssp             --CBSSSCCCCSCCCCCEEEEECCSCCCCEESCSEE
T ss_pred             EEEECCCCCccccEEEEEEEECccCCCCCccCCCce
Confidence            999998 57889999999999999999999998765

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.80  E-value=1.3e-19  Score=128.68  Aligned_cols=86  Identities=26%  Similarity=0.398  Sum_probs=72.7

Q ss_pred             EEEEeCCCCCCCCcEEEEEEeCC---CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceE
Q psy9968           3 VHATDVDPPSNGGTIQYRIIKAP---GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEI   79 (118)
Q Consensus         3 v~A~D~D~~~~n~~i~y~i~~~~---~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~   79 (118)
                      +.|+|+|.     .++|+|...+   +...+|.|++.||.|++.+.                      ||||   ....|
T Consensus        25 v~a~D~d~-----~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y   74 (218)
T 3k5r_A           25 VVDSDRPE-----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT----------------------LDRE---TIATY   74 (218)
T ss_dssp             CBCTTCCT-----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCSEE
T ss_pred             EEecCCCc-----eEEEEEEcCCCCCCCCCeEEEeCCceEEEECCc----------------------CCcc---cCCEE
Confidence            44555543     6899998532   22468999999999999999                      7887   66789


Q ss_pred             EEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          80 YITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        80 ~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|.|+|.|.|++++++.|.|+|.|+|||+|+|.+..|
T Consensus        75 ~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  113 (218)
T 3k5r_A           75 QLYVETTDASGKTLEGPVPLEVIVIDQNDNRPIFREGPY  113 (218)
T ss_dssp             EEEEEEECSSSCEEEEEEEEEEEEECTTCCCCCCCSCSE
T ss_pred             EEEEEEEECCCCceeeeEEEEEEEEeCCCCCCcccCCce
Confidence            999999999999999999999999999999999998765

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=99.80  E-value=3.7e-19  Score=141.01  Aligned_cols=91  Identities=27%  Similarity=0.419  Sum_probs=78.2

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCC--CCcceE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDP--EREKEI   79 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~--~~~~~~   79 (118)
                      +|+|+|+|.| .|++|+|+|.....  .+|.|++.+|.|++.+.                      ||||..  .....|
T Consensus       353 ~v~A~D~D~g-~n~~i~y~i~~~~~--~~f~id~~tG~i~~~~~----------------------lDrE~~~~~~~~~y  407 (550)
T 3q2v_A          353 SYTAREPDTF-MDQKITYRIWRDTA--NWLEINPETGAIFTRAE----------------------MDREDAEHVKNSTY  407 (550)
T ss_dssp             ECCEECCCCS-TTCCCEEEEEECTT--CCEEECTTTCEEEECSC----------------------CCTTCTTTCCSSEE
T ss_pred             EEeCCCCCCC-CCCCEEEEEecCCC--CcEEEeCCCcEEEECCc----------------------cCcccccccCCCEE
Confidence            5789999999 78999999986543  48999999999999999                      566521  012689


Q ss_pred             EEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCC
Q psy9968          80 YITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ  117 (118)
Q Consensus        80 ~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~  117 (118)
                      .|+|.|+|.|.|+++++++|.|+|.|+|||+|+|.+..
T Consensus       408 ~l~V~A~D~g~p~~s~~~~v~I~V~DvNDn~P~~~~~~  445 (550)
T 3q2v_A          408 VALIIATDDGSPIATGTGTLLLVLLDVNDNAPIPEPRN  445 (550)
T ss_dssp             EEEEEEECCSSSCCCEEEEEEEEEECCCCCCCEESCSS
T ss_pred             EEEEEEEeCCCCcceeEEEEEEEEEeCCCCCCcCcCcc
Confidence            99999999999999999999999999999999998643

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.80  E-value=2.2e-19  Score=126.51  Aligned_cols=83  Identities=27%  Similarity=0.386  Sum_probs=72.2

Q ss_pred             EeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEEE
Q psy9968           6 TDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIA   85 (118)
Q Consensus         6 ~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~a   85 (118)
                      +|+|.| .+   +|+|..+.. ..+|.|++.||.|++.+.                      ||||   ....|.|.|.|
T Consensus        26 ~D~D~g-~~---~Y~i~~~~~-~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l~v~a   75 (203)
T 3ppe_A           26 SSVGNK-NA---MYIIEGESA-NTIFKVQGYDGDIYAFER----------------------LDRE---KKAEYELTAHI   75 (203)
T ss_dssp             BCCCCT-TE---EEEEEETTB-TTTEEEETTTTEEEESSC----------------------CCTT---TCCEEEEEEEE
T ss_pred             ecCCCC-Cc---EEEEecCCC-CCeEEEECCcCEEEECcc----------------------cccc---ccceEEEEEEE
Confidence            788887 34   999995433 358999999999999998                      7887   66789999999


Q ss_pred             EECCCC-CCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          86 EDNGTP-QLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        86 ~D~g~p-~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|.| ++++++.|.|+|.|+|||+|+|.+..|
T Consensus        76 ~D~g~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  109 (203)
T 3ppe_A           76 IDRRNNRSLEPPSKFIIKVSDINDNAPIFVQKIF  109 (203)
T ss_dssp             EETTTTEECSCCEEEEEEEECCCCCCCEESCSEE
T ss_pred             EECCCCCcccceEEEEEEEcCCCCCCCCccCCcc
Confidence            999987 688999999999999999999998765

>1wyj_A Protocadherin beta 14; SS bond, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Mus musculus}

Probab=99.78  E-value=1.8e-20  Score=123.39  Aligned_cols=88  Identities=16%  Similarity=0.254  Sum_probs=67.5

Q ss_pred             EEEEEeCCCCCCCCcE---EEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCC-Ccc
Q psy9968           2 QVHATDVDPPSNGGTI---QYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPE-REK   77 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i---~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~-~~~   77 (118)
                      +| |+|+|.+ . +.+   +|+|..+ +...+|.||+.||.|++.++                      ||||..+ ...
T Consensus        29 ~v-a~D~d~~-~-~~i~~~~Y~i~~~-~~~~~F~Id~~tG~i~~~~~----------------------LDRE~~c~~~~   82 (125)
T 1wyj_A           29 NL-AKDLGLS-L-RELITRGAQILSK-GNKQLLQLEQKSGNLLLKEK----------------------LDREELCGSTN   82 (125)
T ss_dssp             ES-TTTTTCC-H-HHHHHTTCEEECS-SSSCSEEECSSSSEEEESSC----------------------CCSTTTCTTCS
T ss_pred             EE-EecCCCC-C-CceeeEEEEEecC-CCCCeEEEECCccEEEECcc----------------------ccchhhcccCC
Confidence            34 7788766 2 345   8999853 33469999999999999999                      5776210 116


Q ss_pred             eEEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          78 EIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        78 ~~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|.++|.+. . ++ +.+.|.|+|.|+|||+|+|.++.|
T Consensus        83 ~y~l~v~a~~~-~-p~-~~~~V~I~V~DvNDN~P~F~~~~y  120 (125)
T 1wyj_A           83 PCILHFQVLLK-S-PV-QFIQGEIQLQDVNDHAPEFMEDES  120 (125)
T ss_dssp             SCCBCCEEEET-T-TT-EEECCCEEECCCCCCCCCCCCCCC
T ss_pred             cEEEEEEEEEC-C-CC-eEEEEEEEEEEccCCCCcCCCcEE
Confidence            78999999973 2 33 588999999999999999999887

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=99.77  E-value=1.3e-18  Score=133.82  Aligned_cols=93  Identities=25%  Similarity=0.389  Sum_probs=75.6

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeC--------CCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCC
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDK--------ETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDD   72 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~--------~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~   72 (118)
                      ++|+|+|+|.| .|+.+.|+|..... ...|.|++        .+|.|++.+.||||.                 ++++ 
T Consensus        12 ~~v~AtD~D~g-~n~~v~Ysi~~~~~-~~~F~I~~~~~~f~v~~tG~i~~~~~LD~E~-----------------~~~~-   71 (419)
T 3ubh_A           12 KRIEFTEADGD-TEGKSVFQLEKETD-KETFKIRDDNPWVTVETNGAVRVKKKWDYEE-----------------LGPE-   71 (419)
T ss_dssp             EEEEEEGGGGC-STTCEEEECCCSST-TCEEEESSCCSSEEECTTSEEEESSCCCGGG-----------------SCTT-
T ss_pred             EEEEEEcccCC-CCceEEEEEecCCC-CceEEEcCCCccEEECCCcEEEECCccCccc-----------------cCcc-
Confidence            47999999999 79999999985433 36899987        899999999965554                 3332 


Q ss_pred             CCCcceEEEEEEEEECCCC---CCeeEEEEEEEEEeCCCCCCeeCCCC
Q psy9968          73 PEREKEIYITVIAEDNGTP---QLSDACTMKITVEDINDNEPMFDRVQ  117 (118)
Q Consensus        73 ~~~~~~~~l~v~a~D~g~p---~~s~~~~v~I~v~DvNDn~P~F~~~~  117 (118)
                          ..|.+.|.|+|.|.|   ++++++.|.|+|.|+|||+|+|.+..
T Consensus        72 ----~~~~~~V~a~d~g~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~  115 (419)
T 3ubh_A           72 ----KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP  115 (419)
T ss_dssp             ----CEEEEEEEEEC--CCSSSCCEEEEEEEEEEECCCCSCCEECCSS
T ss_pred             ----ceEEEEEEEEeCCCCCCCCCcceEEEEEEEEECCCCCCcccCCC
Confidence                589999999998865   67888999999999999999999765

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=99.77  E-value=3.7e-19  Score=140.94  Aligned_cols=92  Identities=36%  Similarity=0.497  Sum_probs=80.0

Q ss_pred             EEEEEeCCCCC--CCCcEEEEEEeCCC---CCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCC
Q psy9968           2 QVHATDVDPPS--NGGTIQYRIIKAPG---ERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPER   75 (118)
Q Consensus         2 ~v~A~D~D~~~--~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~   75 (118)
                      +|+|+|+|.|.  .|+.++|+|....+   ...+|.|++.||.|++. +.                      ||||   .
T Consensus       135 ~v~A~D~D~g~~~~n~~v~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~~----------------------LD~E---~  189 (546)
T 1l3w_A          135 AVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTG----------------------LDRE---K  189 (546)
T ss_dssp             ECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCC----------------------CCTT---T
T ss_pred             EEEEEcCCCCCCCCCCEEEEEEeCCCCCcccCCcEEEeCCCceEEEeccC----------------------CCcc---c
Confidence            67899999882  47999999986442   24689999999999986 56                      7887   6


Q ss_pred             cceEEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          76 EKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        76 ~~~~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      ...|.|.|.|+|.|+|+++++++|.|+|.|+|||+|+|.+..|
T Consensus       190 ~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y  232 (546)
T 1l3w_A          190 FPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY  232 (546)
T ss_dssp             CCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEE
T ss_pred             CceEEEEEEEEECCCCCcceEEEEEEEEeecCCCCCccccccc
Confidence            6799999999999999999999999999999999999998755

>2ee0_A Protocadherin-9; Ca domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=3.7e-19  Score=115.15  Aligned_cols=78  Identities=29%  Similarity=0.462  Sum_probs=67.7

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCC--CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAP--GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEI   79 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~--~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~   79 (118)
                      +|+|+|+|.| .|++|+|+|....  ....+|.||+.||.|++.+.                      ||||   ....|
T Consensus        35 ~v~A~D~D~g-~n~~i~Y~i~~~~~~~~~~~F~Id~~tG~I~~~~~----------------------LD~E---~~~~y   88 (114)
T 2ee0_A           35 QLHATDADIG-SNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRS----------------------LDRE---ETAIH   88 (114)
T ss_dssp             ECCCCSCSSC-CCSCCEEEECSSCCHHHHHHEEECTTTCEEEECSC----------------------CCTT---TCSEE
T ss_pred             EEEEEeCCCC-CCcEEEEEEccCCCCCccceEEEeCCeeEEEECcc----------------------CCcc---cCcEE
Confidence            6789999999 7999999998522  22468999999999999998                      7887   56799


Q ss_pred             EEEEEEEECCCCCCeeEEEEEEEEEeCC
Q psy9968          80 YITVIAEDNGTPQLSDACTMKITVEDIN  107 (118)
Q Consensus        80 ~l~v~a~D~g~p~~s~~~~v~I~v~DvN  107 (118)
                      .|.|.|+|.|.|+  ++++|.|+|.|+|
T Consensus        89 ~l~V~A~D~g~~~--~~~~v~I~V~DvN  114 (114)
T 2ee0_A           89 KVTVLASDGSSTP--ARATVTINVTDVN  114 (114)
T ss_dssp             EEEEEEESSSSSC--EEEEEEEEEECCC
T ss_pred             EEEEEEEECCCCc--eEEEEEEEEEECC
Confidence            9999999999876  7899999999998

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.77  E-value=2.2e-18  Score=121.83  Aligned_cols=80  Identities=33%  Similarity=0.470  Sum_probs=71.4

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|.|+|+|.| .|+.++|+|... .  .+|.|++.+|.|++.+.                      ||||   ....|.|
T Consensus       130 ~v~A~D~D~g-~n~~v~Y~i~~~-~--~~F~Id~~tG~i~~~~~----------------------LD~E---~~~~y~l  180 (210)
T 3mvs_A          130 IVNATDPDLG-AGGSVLYSFQPP-S--PFFAIDSARGIVTVIQE----------------------LDYE---VTQAYQL  180 (210)
T ss_dssp             ECCEECCSSG-GGGCEEEEESSC-C--SSEEECTTTCEEEECSC----------------------CCTT---TCSEEEE
T ss_pred             EEEEEeCCCC-CCceEEEEEeCC-C--CCEEEeCCcEEEEECCc----------------------CCCc---ccceEEE
Confidence            6789999999 689999999743 2  48999999999999999                      6887   5679999


Q ss_pred             EEEEEECC-CCCCeeEEEEEEEEEeCCCCC
Q psy9968          82 TVIAEDNG-TPQLSDACTMKITVEDINDNE  110 (118)
Q Consensus        82 ~v~a~D~g-~p~~s~~~~v~I~v~DvNDn~  110 (118)
                      .|.|+|.| .|+++++++|.|+|.|+|||+
T Consensus       181 ~V~a~D~g~~~~~s~~~~v~I~V~DvND~~  210 (210)
T 3mvs_A          181 TVNATDQDKTRPLSTLANLAIIITDMQDMD  210 (210)
T ss_dssp             EEEEEECCSSSCCEEEEEEEEEEECCCCCC
T ss_pred             EEEEEECCCCCCCEEEEEEEEEEEccCCCC
Confidence            99999998 478999999999999999986

>3q2v_A Cadherin-1; cell adhesion, calcium binding; HET: MAN; 3.40A {Mus musculus}

Probab=99.76  E-value=5.5e-19  Score=140.05  Aligned_cols=92  Identities=34%  Similarity=0.536  Sum_probs=79.5

Q ss_pred             EEEEEeCCCCC--CCCcEEEEEEeCCC---CCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCC
Q psy9968           2 QVHATDVDPPS--NGGTIQYRIIKAPG---ERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPER   75 (118)
Q Consensus         2 ~v~A~D~D~~~--~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~   75 (118)
                      +|.|+|+|.|.  .|+.++|+|..+.+   ...+|.|++.+|.|++. +.                      ||||   .
T Consensus       129 ~v~A~D~D~g~~~~N~~i~Ysi~~~~~~~~~~~~F~id~~tG~i~~~~~~----------------------LDrE---~  183 (550)
T 3q2v_A          129 KVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG----------------------LDRE---S  183 (550)
T ss_dssp             ECCBCCCSCTTTCGGGCCEEEEEEEESCCSSSCSEEECTTTCEEEECSSC----------------------CCTT---T
T ss_pred             EEEEEeCCCCCCCcceEEEEEEecCCCCCCcCCceEEcCCCeEEEEccCC----------------------CCcc---c
Confidence            67899999882  47899999986322   24589999999999885 56                      7888   6


Q ss_pred             cceEEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          76 EKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        76 ~~~~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      +..|.|.|+|+|.|+|+++++++|.|+|.|+|||+|+|.+..|
T Consensus       184 ~~~y~l~V~A~D~g~~~~s~t~~v~I~V~DvNDn~P~F~~~~y  226 (550)
T 3q2v_A          184 YPTYTLVVQAADLQGEGLSTTAKAVITVKDINDNAPVFNPSTY  226 (550)
T ss_dssp             CSEEEEEEEEESGGGTSCCCEEEEEEEEECCSCSCCEESSSEE
T ss_pred             CcEEEEEEEEEcCCCCCeeEEEEEEEEecccCCCCCEEeccee
Confidence            7799999999999999999999999999999999999998765

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=99.76  E-value=2.3e-18  Score=128.15  Aligned_cols=95  Identities=17%  Similarity=0.345  Sum_probs=73.8

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCC--------CccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCC
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGE--------RAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDD   72 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~--------~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~   72 (118)
                      .+++|+|+|.+ .||.+.|+|....+.        ..+|.|++ +|.|++.+.||||.                 ++++ 
T Consensus         7 ~~~~atd~D~g-~ng~v~y~l~~~~~~~~f~i~~~~~~F~i~~-tG~l~~~~~LD~E~-----------------~~~~-   66 (316)
T 3ubf_A            7 KRIEFTEADGD-TEGKSVFQLEKETDKETFKIRDDNPWVTVET-NGAVRVKKKWDYEE-----------------LGPE-   66 (316)
T ss_dssp             EEEEEESGGGC-STTCEEEECCCSSTTCEEEESSCCSSEEECT-TSEEEESSCCCGGG-----------------SCTT-
T ss_pred             EEEEEEecCCC-CCceEEEEEEcCCCcceEEEeCCCCeEEECC-CeEEEECCccChhh-----------------cccc-
Confidence            36899999999 799999999753321        24788988 99999999977775                 5554 


Q ss_pred             CCCcceEEEEEEEEECCCC-CCeeEEEEEEEEEeCCCCCCeeCCCC
Q psy9968          73 PEREKEIYITVIAEDNGTP-QLSDACTMKITVEDINDNEPMFDRVQ  117 (118)
Q Consensus        73 ~~~~~~~~l~v~a~D~g~p-~~s~~~~v~I~v~DvNDn~P~F~~~~  117 (118)
                        ....|.+.+.|.|++.| +++++++|.|+|.|+|||+|+|.+..
T Consensus        67 --~~~~~~l~v~a~d~~~~~~~s~~~~v~I~V~DvNDn~P~F~~~~  110 (316)
T 3ubf_A           67 --KTIDFWVIITNMGHNAGIKYTDNQRVIILVKDVNDEPPYFINRP  110 (316)
T ss_dssp             --CEEEEEEEEEC-------CCCEEEEEEEEEECTTCCCCEECCSS
T ss_pred             --cceEEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccCCCC
Confidence              45688999999999876 68999999999999999999999765

>1zvn_A Mn-cadherin; strand dimer, ----; 2.16A {Gallus gallus}

Probab=99.76  E-value=3.1e-18  Score=108.54  Aligned_cols=75  Identities=24%  Similarity=0.424  Sum_probs=66.1

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|+ +|+|.|  |++|+|+|..... ..+|.||+.||.|++.++                      ||||   .+..|.|
T Consensus        24 ~v~-~D~D~g--Ng~v~Ysi~~~~~-~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l   74 (99)
T 1zvn_A           24 KLH-SDMDRG--DGSIKYILSGEGA-GIVFTIDDTTGDIHAIQR----------------------LDRE---ERSQYTL   74 (99)
T ss_dssp             ECC-BTTCCS--SSCEEEEEEETTB-TTTEEECTTTCEEEECSC----------------------CCTT---TCSEEEE
T ss_pred             EEE-ECCCCC--CCEEEEEEeCCCC-CceEEEeCCCCCEEECee----------------------cCCc---cCCeEEE
Confidence            566 999998  7999999986443 258999999999999998                      7888   6789999


Q ss_pred             EEEEEECC-CCCCeeEEEEEEEEEe
Q psy9968          82 TVIAEDNG-TPQLSDACTMKITVED  105 (118)
Q Consensus        82 ~v~a~D~g-~p~~s~~~~v~I~v~D  105 (118)
                      .|.|+|.| +|++++++.|.|+|.|
T Consensus        75 ~V~A~D~G~~p~l~~~~~v~I~V~D   99 (99)
T 1zvn_A           75 RAQALDRRTGRPMEPESEFIIKIQD   99 (99)
T ss_dssp             EEEEEETTTCCBSSCCEEEEEEEEC
T ss_pred             EEEEEECCCCCCcceeEEEEEEEeC
Confidence            99999999 5999999999999987

>1zxk_A Cadherin-8; strand dimer, cell adhesion; 2.00A {Mus musculus} PDB: 2a4c_A

Probab=99.75  E-value=3.8e-18  Score=107.92  Aligned_cols=75  Identities=31%  Similarity=0.438  Sum_probs=63.7

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|. +|+|.|  |++|+|+|...+. ..+|.||+.||.|++.++                      ||||   .++.|.|
T Consensus        23 ~v~-~D~D~g--N~~v~Ysi~~~~~-~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l   73 (98)
T 1zxk_A           23 RLH-TDLDPG--SKKIKYILSGDGA-GTIFQINDITGDIHAIKR----------------------LDRE---EKAEYTL   73 (98)
T ss_dssp             ECC-BCCCCC----CEEEEEEETTB-TTTEEECTTTCEEEECSC----------------------CCTT---TCSEEEE
T ss_pred             EEE-ECCCCC--CCEEEEEEeCCCC-CCEEEEECCccEEEECcc----------------------CCCc---CCCeEEE
Confidence            454 899998  6999999986433 258999999999999999                      7887   6789999


Q ss_pred             EEEEEECCC-CCCeeEEEEEEEEEe
Q psy9968          82 TVIAEDNGT-PQLSDACTMKITVED  105 (118)
Q Consensus        82 ~v~a~D~g~-p~~s~~~~v~I~v~D  105 (118)
                      .|.|+|.|. |++++++.|.|+|.|
T Consensus        74 ~v~A~D~g~~~~l~~~~~v~I~V~D   98 (98)
T 1zxk_A           74 TAQAVDFETNKPLEPPSEFIIKVQD   98 (98)
T ss_dssp             EEEEEETTTCCBSSCCEEEEEEECC
T ss_pred             EEEEEECCCCCCcceeEEEEEEEEC
Confidence            999999997 789999999999987

>1l3w_A EP-cadherin, C-cadherin; cell adhesion, calcium binding, extracellular, ECT metal binding protein; HET: NAG NDG; 3.08A {Xenopus laevis} SCOP: b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1 b.1.6.1

Probab=99.75  E-value=1.6e-18  Score=137.37  Aligned_cols=89  Identities=25%  Similarity=0.367  Sum_probs=76.6

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCC-CCcceEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDP-EREKEIY   80 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~-~~~~~~~   80 (118)
                      +|.|+|+|.| .|++++|+|....  ..+|.|++.+|.|++.+.                      ||||.. .....|.
T Consensus       359 ~v~A~D~D~g-~n~~i~ysi~~~~--~~~F~Id~~tG~i~~~~~----------------------lD~E~~~~~~~~y~  413 (546)
T 1l3w_A          359 SLVAQDPDKQ-QIQKLSYFIGNDP--ARWLTVNKDNGIVTGNGN----------------------LDRESEYVKNNTYT  413 (546)
T ss_dssp             ECCEECCCTT-CCCCEEEEECCCS--SCCCEEETTTTEEEECSC----------------------CCTTSSSCCSSCCE
T ss_pred             EEEEECCCCC-CCceEEEEECCCC--CCcEEEeCCcEEEEECCc----------------------cCCccccCCCCEEE
Confidence            6789999998 6899999998543  358999999999999999                      566621 0126899


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR  115 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~  115 (118)
                      |.|.|+|.|.|+++++++|.|+|.|+|||+|+|.+
T Consensus       414 l~V~a~D~g~p~~s~~~~v~I~V~DvNDn~P~f~~  448 (546)
T 1l3w_A          414 VIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSP  448 (546)
T ss_dssp             EEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSC
T ss_pred             EEEEEEECCCCCcEeEEEEEEEEEECCCCcCCccC
Confidence            99999999999999999999999999999999974

>3q2w_A Cadherin-2; cell adhesion, calcium binding; HET: MAN NAG; 3.20A {Mus musculus}

Probab=99.75  E-value=5.4e-18  Score=134.58  Aligned_cols=91  Identities=21%  Similarity=0.296  Sum_probs=79.1

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCC---CccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~---~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      .+.+.+.|.+ .|+.|+|+|.+.+..   ..+|.||+.||.|++.+.                      ||||   ....
T Consensus        20 ~i~~~~~D~~-~n~~i~Ysi~~~~~~~~~~~~F~id~~tG~l~~~~~----------------------LDrE---~~~~   73 (559)
T 3q2w_A           20 ELVRIRSDRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----------------------LDRE---LIAR   73 (559)
T ss_dssp             EEEECCCGGG-GTSCEEEEEESBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCSE
T ss_pred             EEEEEeeCCC-CCcEEEEEEECCCCCCCCCceEEEeCCceEEEECCc----------------------cCCC---CCce
Confidence            3567788887 689999999964432   258999999999999999                      7887   6678


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |.|.|.|.|.|++++++++.|.|+|.|+|||+|+|.+..|
T Consensus        74 y~l~v~a~D~g~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  113 (559)
T 3q2w_A           74 FHLRAHAVDINGNQVENPIDIVINVIDMNDNRPEFLHQVW  113 (559)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEECCCCCCCEESCSEE
T ss_pred             EEEEEEEEECCCCccceeEEEEEEEEeCCCCCCccCCCee
Confidence            9999999999999999999999999999999999998765

>2x2u_A Proto-oncogene tyrosine-protein kinase receptor RET; hirschsprung disease, extracellular domain, disease mutation, transferase, glycoprotein; HET: NAG SO4; 2.00A {Homo sapiens}

Probab=99.75  E-value=9.7e-20  Score=131.78  Aligned_cols=91  Identities=19%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             CEEEEEeCCCCC-CCCcEE------EEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCC
Q psy9968           1 MQVHATDVDPPS-NGGTIQ------YRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDP   73 (118)
Q Consensus         1 ~~v~A~D~D~~~-~n~~i~------y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~   73 (118)
                      ++|+|+|+|.|. .+.+|.      |+|...  ...+|.||+.||.|++.+.                      ||||  
T Consensus        23 ~~v~A~D~D~g~~~~~~i~~~~~~~y~i~~~--~~~~F~Id~~tG~i~~~~~----------------------LDrE--   76 (246)
T 2x2u_A           23 LYVHALRDAPEEVPSFRLGQHLYGTYRTRLH--ENNWIRIQEDTGLLYLQRS----------------------LDHS--   76 (246)
T ss_dssp             EECCEECSSTTCCCCCEECSEEECGGGCEEE--ECCSEEECTTTCEEEESSC----------------------BCHH--
T ss_pred             EEEEEEcCCCCCcceEEEeeccccceeccCC--CCCEEEECCCcEEEEECCc----------------------CChh--
Confidence            368999999863 345555      666543  2358999999999999999                      5666  


Q ss_pred             CCcceE------------EEEEEEEECCCC--CCeeEEEEEEEEEeCCCCCCe----------eCCCCC
Q psy9968          74 EREKEI------------YITVIAEDNGTP--QLSDACTMKITVEDINDNEPM----------FDRVQY  118 (118)
Q Consensus        74 ~~~~~~------------~l~v~a~D~g~p--~~s~~~~v~I~v~DvNDn~P~----------F~~~~Y  118 (118)
                       ....|            .|.|.|+|.|.|  +++++++|.|+|.|+|||+|+          |.+..|
T Consensus        77 -~~~~y~~~~~G~p~~~~~l~V~a~D~g~~~~~~~~~~~v~I~V~DvNDn~P~~~~~~~~~~~F~~~~y  144 (246)
T 2x2u_A           77 -SWEKLSVRNRGFPLLTVYLKVFLSPTSLREGECQWPGCARVYFSFFNTSFPACSSLKPRELCFPETRP  144 (246)
T ss_dssp             -HHHHHHHTSTTSCCCEEEEEEECC-------CCCTTTEEEEEEEEESSCCCCGGGCCHHHHHSCSSCC
T ss_pred             -HhhhhccccCCCcccceEEEEEEEcCCCCCCcccceEEEEEEEEECCCCCCccccccccccccCCCcE
Confidence             45567            999999999987  788999999999999999999          998776

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=99.75  E-value=1.4e-18  Score=144.07  Aligned_cols=93  Identities=37%  Similarity=0.507  Sum_probs=80.6

Q ss_pred             CEEEEEeCCCCC--CCCcEEEEEEeCCC---CCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCC
Q psy9968           1 MQVHATDVDPPS--NGGTIQYRIIKAPG---ERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPE   74 (118)
Q Consensus         1 ~~v~A~D~D~~~--~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~   74 (118)
                      ++|+|+|+|.|.  .|+.++|+|....+   ...+|.||+.||.|++. +.                      ||||   
T Consensus       283 ~~v~AtD~D~g~~~~N~~v~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~~----------------------LDrE---  337 (880)
T 1q55_A          283 MAVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTG----------------------LDRE---  337 (880)
T ss_dssp             EECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCC----------------------CCTT---
T ss_pred             EEEEEEcCCCCCCCcCcEEEEEEcCCCCCcccCCeEEEccCCccEEEeccc----------------------CCHH---
Confidence            368899999982  47999999986443   34689999999999986 56                      7887   


Q ss_pred             CcceEEEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          75 REKEIYITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        75 ~~~~~~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      ....|.|.|+|+|.|+|+++++++|.|+|.|+|||+|+|.+..|
T Consensus       338 ~~~~y~l~V~A~D~g~~~~s~~~~v~I~V~DvNDn~P~F~~~~y  381 (880)
T 1q55_A          338 KFPEYTLTVQATDLEGAGLSVEGKAIIQITDANDNAPIFDPKTY  381 (880)
T ss_dssp             TCCEEEEEEEEEHHHHTSCEEECCEEEEEECCCCCCCCBSCSEE
T ss_pred             HcceeEEEEEEEECCCCCccceeEEEEEEEeccCCCCCccccce
Confidence            66799999999999999999999999999999999999998765

>3mvs_A Cadherin-23, otocadherin; adhesion, extracellular domain, cell adhesion; 1.10A {Mus musculus} PDB: 4apx_A* 2whv_A 2wcp_A* 4aq8_A 4axw_A* 4aqe_A* 4aqa_A* 2wd0_A* 2wbx_A

Probab=99.74  E-value=3.9e-18  Score=120.52  Aligned_cols=84  Identities=26%  Similarity=0.427  Sum_probs=71.2

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|.|+|+|.+    .+.|+|.... ...+|.|++.+|.|++.+.                      ||||   ....|.|
T Consensus        31 ~v~A~D~D~~----~~~y~i~~~~-~~~~F~Id~~tG~i~~~~~----------------------LD~E---~~~~y~l   80 (210)
T 3mvs_A           31 QLLARDMDND----PLVFGVSGEE-ASRFFAVEPDTGVVWLRQP----------------------LDRE---TKSEFTV   80 (210)
T ss_dssp             ECCEECTTCC----CCEEEEESHH-HHHHEEECTTTCEEEESSC----------------------CCTT---TCCEEEE
T ss_pred             EEEEEeCCCC----cEEEEEeCCC-CCCcEEEeCCCCEEEECCc----------------------cCCc---ccceEEE
Confidence            6789999954    4899998432 2358999999999999999                      6887   6679999


Q ss_pred             EEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          82 TVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        82 ~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|+|.+.   .+++.|.|+|.|+|||+|+|.+..|
T Consensus        81 ~v~a~D~~~---~~~~~v~I~V~DvNDn~P~f~~~~y  114 (210)
T 3mvs_A           81 EFSVSDHQG---VITRKVNIQVGDVNDNAPTFHNQPY  114 (210)
T ss_dssp             EEEEECSSC---EEEEEEEEEEECCCCCCCEECSCSE
T ss_pred             EEEEEeCCC---CEEEEEEEEEEeCCCCCCcCCCceE
Confidence            999999875   4678999999999999999998765

>2omz_B Epithelial-cadherin; leucine-rich-repeat, nvasion protein, IG-like domain, adhesi protein, cell invasion-cell adhesion complex; 1.60A {Homo sapiens} SCOP: b.1.6.1 PDB: 2omt_B 2omu_B 2omv_B 1o6s_B 2omy_B 2omx_B 3ff8_A 3ff7_A 2omw_B

Probab=99.73  E-value=8.7e-18  Score=107.39  Aligned_cols=76  Identities=26%  Similarity=0.361  Sum_probs=64.6

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCC---CccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~---~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +|.|   |.+ .|++|+|+|......   ..+|.||+.||.|++.++                      ||||   .+..
T Consensus        27 ~v~A---d~g-~N~~i~Ysi~~~~~~~~~~~~F~Id~~tG~I~~~~~----------------------LDrE---~~~~   77 (105)
T 2omz_B           27 QIKS---NKD-KEGKVFYSITGQGADTPPVGVFIIERETGWLKVTEP----------------------LDRE---RIAT   77 (105)
T ss_dssp             ECEE---GGG-GSSCCEEEEEEBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCCE
T ss_pred             EEEC---CCC-CCCeEEEEEeCCCCCCCccCEEEEeCCCCEEEECcc----------------------CCcC---CCCe
Confidence            4566   446 689999999875432   358999999999999999                      7887   6789


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEeC
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVEDI  106 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~Dv  106 (118)
                      |.|.|+|+|.|.|++++++.|.|+|.|+
T Consensus        78 y~l~V~A~D~g~p~~~~~~~v~I~V~Dv  105 (105)
T 2omz_B           78 YTLFSHAVSSNGNAVEDPMEILITVTDQ  105 (105)
T ss_dssp             EEEEEEEECTTSCBSSCCEEEEEEEEC-
T ss_pred             EEEEEEEEECCCCceeeEEEEEEEEEeC
Confidence            9999999999999999999999999996

>3ubf_A Neural-cadherin; cell adhesion; 2.50A {Drosophila melanogaster} PDB: 3ubg_A

Probab=99.73  E-value=6.8e-18  Score=125.63  Aligned_cols=87  Identities=22%  Similarity=0.354  Sum_probs=72.5

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|.|+|+|.| .|  ++|+|..+. ...+|.|++.+|.|++.+.                      ||||   ....|.|
T Consensus       129 ~v~A~D~D~g-~n--i~Y~i~~~~-~~~~F~Id~~tG~i~~~~~----------------------lD~e---~~~~y~l  179 (316)
T 3ubf_A          129 TLQARDPDTD-HN--IHYFIVRDR-TGGRFEVDERSGVVRTRGT----------------------DLFQ---LDMEYVL  179 (316)
T ss_dssp             ECCEECSSTT-CC--EEEEEEEEE-SSSCEEECTTTCEEEECSS----------------------CCCC---TTCEEEE
T ss_pred             EEEEECCCCC-Cc--eEEEEEeCC-CCCEEEEECCccEEEECCc----------------------CCcc---cCcEEEE
Confidence            6789999998 45  999998532 2358999999999999999                      6776   5568999


Q ss_pred             EEEEEECCC----CCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          82 TVIAEDNGT----PQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        82 ~v~a~D~g~----p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|+|.|+    |++++++.+.|+|.| |||+|+|.+..|
T Consensus       180 ~V~A~D~g~~~~~~~~~~~~~v~I~V~d-nDn~P~F~~~~y  219 (316)
T 3ubf_A          180 YVKAEDQNGKVDDRRFQSTPEERLSIVG-GKRAPQFYMPSY  219 (316)
T ss_dssp             EEEEEESCC-------CBCCCEEEEEEE-SCCCCEESSSSE
T ss_pred             EEEEEeCCCCCCCccccceEEEEEEEEc-CCCCCEEcCCCc
Confidence            999999985    468889999999999 999999998876

>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}

Probab=99.73  E-value=3.3e-18  Score=128.02  Aligned_cols=86  Identities=34%  Similarity=0.457  Sum_probs=73.6

Q ss_pred             EEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEE
Q psy9968           5 ATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVI   84 (118)
Q Consensus         5 A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~   84 (118)
                      |+|+|.|  ++.++|+|...+. ..+|.||+.+|.|++.+.                      ||||   ....|.|.|.
T Consensus        25 a~D~D~g--~~~i~Y~l~~~~~-~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~y~l~v~   76 (322)
T 2a62_A           25 HTDLDPG--SKKIKYILSGDGA-GTIFQINDITGDIHAIKR----------------------LDRE---EKAEYTLTAQ   76 (322)
T ss_dssp             CCCCCCS--SCCCEEEEEETTB-TTTEEEETTTTEEEECSC----------------------CCTT---TCSBCCEEEE
T ss_pred             EEcCCCC--CCEEEEEEECCCC-CCcEEEeCCcCEEEEecc----------------------CCcc---cccEEEEEEE
Confidence            4799987  5889999985432 358999999999999998                      6887   5678999999


Q ss_pred             EEECCC-CCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          85 AEDNGT-PQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        85 a~D~g~-p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      |+|.+. +++++++.+.|+|.|+|||+|+|.+..|
T Consensus        77 a~D~~~~~~~~~~~~v~I~V~DvNDn~P~F~~~~y  111 (322)
T 2a62_A           77 AVDFETNKPLEPPSEFIIKVQDINDNAPEFLNGPY  111 (322)
T ss_dssp             EECTTTCSEEEEEEEECEECCCCSCSCBCCSSSEE
T ss_pred             EEECCCCCcccceEEEEEEEEecCCCCCccCCCce
Confidence            999875 5688899999999999999999998755

>3ubh_A Neural-cadherin; cell adhesion; 2.70A {Drosophila melanogaster}

Probab=99.72  E-value=3.1e-17  Score=126.25  Aligned_cols=90  Identities=27%  Similarity=0.427  Sum_probs=73.2

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYI   81 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l   81 (118)
                      +|.|+|+|    |+.++|+|...++...+|.|++.+|.|++.+.                      ||||.......|.|
T Consensus       240 ~v~A~D~d----n~~i~Ysi~~~~~~~~~F~I~~~tG~i~~~~~----------------------LD~E~~~~~~~y~l  293 (419)
T 3ubh_A          240 SIKAKSFA----DREIRYTLKAQGQGAGTFNIGPTSGIVKLAKE----------------------LDFEDLRQPHVYSL  293 (419)
T ss_dssp             ECCEECSS----CCCCEEEEEESSSCCSSEEECTTTCEEEECSC----------------------CCTTCTTSCSEEEE
T ss_pred             EEEEecCC----CCceEEEEecCCCCCCcEEEECCCCEEEECcc----------------------cCccccccccEEEE
Confidence            57899986    46799999865544579999999999999999                      56663222247999


Q ss_pred             EEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          82 TVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        82 ~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      .|.|+|.+ ++++++++|.|+|.|+|||+|+|.++.|
T Consensus       294 ~V~a~dd~-~~~s~~~~v~I~V~DvNDn~P~f~~~~~  329 (419)
T 3ubh_A          294 IVTATEDS-GGFSTSVDLTIRVTDVNDNAPKFELPDY  329 (419)
T ss_dssp             EEEEECTT-TSCEEEEEEEEEEECCCCCCCEESSSEE
T ss_pred             EEEEEeCC-CCcEEEEEEEEEEEccCCCCCcccCCcc
Confidence            99999754 4689999999999999999999998754

>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*

Probab=99.72  E-value=7.6e-18  Score=139.73  Aligned_cols=89  Identities=25%  Similarity=0.364  Sum_probs=76.7

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCC-CcceEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPE-REKEIY   80 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~-~~~~~~   80 (118)
                      +|.|+|+|.| .|+.++|+|....  ..+|.||+.+|.|++.+.                      ||||... ....|.
T Consensus       508 ~v~A~D~D~g-~n~~v~Ysi~~~~--~~~F~Id~~tG~I~~~~~----------------------LDrE~~~~~~~~y~  562 (880)
T 1q55_A          508 SLVAQDPDKQ-QIQKLSYFIGNDP--ARWLTVNKDNGIVTGNGN----------------------LDRESEYVKNNTYT  562 (880)
T ss_dssp             ECCEECCCTT-CCCCEEEEECCCS--SCCCEEETTTTEEEECSC----------------------CCTTSSSCCSSCCE
T ss_pred             EEEEEeCCCC-CCCcEEEEECCCC--CCCEEEeCCccEEEECCc----------------------cCcccccCCCCEEE
Confidence            5789999998 6899999998543  359999999999999999                      5666210 126899


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDR  115 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~  115 (118)
                      +.|.|+|.|.|+++++++|.|+|.|+|||+|+|.+
T Consensus       563 l~V~A~D~g~p~~sst~tv~I~V~DvNDn~P~f~~  597 (880)
T 1q55_A          563 VIMLVTDDGVSVGTGTGTLILHVLDVNDNGPVPSP  597 (880)
T ss_dssp             EEEEEEECSSSCCCCCEEEECCBCCCCCSCCCBSC
T ss_pred             EEEEEEECCCCCcEeEEEEEEEEEeCCCCCCCccC
Confidence            99999999999999999999999999999999974

>3k6i_A T-cadherin; cell adhesion, alternative splicing, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein; 1.13A {Gallus gallus}

Probab=99.72  E-value=2.9e-17  Score=103.87  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=64.9

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCC---CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAP---GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~---~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +|+|+|+|.     .|+|+|...+   +....|.||+.||.|++.++                      ||||   ....
T Consensus        23 ~V~A~D~D~-----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~   72 (99)
T 3k6i_A           23 KVIRSEGTE-----GAKFRLSGKGVDQDPKGIFRINEISGDVSVTRP----------------------LDRE---AIAN   72 (99)
T ss_dssp             ECEETTCCS-----SEEEEEESBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCCE
T ss_pred             EEEEEcCCC-----eEEEEEeCCCCCCCcCCEEEEECCCcEEEECcc----------------------cCCc---cCCE
Confidence            688999996     5999998532   22468999999999999999                      7887   6789


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      |.|.|+|+|.|+|++++.+.|.|+|.|
T Consensus        73 y~l~v~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6i_A           73 YELEVEVTDLSGKIIDGPVRLDISVID   99 (99)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCceeeeEEEEEEEEC
Confidence            999999999999999999999999987

>3k6f_A T-cadherin; cell adhesion, calcium, cell membrane, cleavage on PAIR of basic residues, glycoprotein, GPI-anchor, lipoprotein, membrane; 1.81A {Mus musculus}

Probab=99.72  E-value=2.1e-17  Score=104.71  Aligned_cols=74  Identities=22%  Similarity=0.324  Sum_probs=64.8

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCC---CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAP---GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~---~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +|+|+|+|.     .|+|+|...+   +...+|.||+.||.|++.++                      ||||   ....
T Consensus        24 ~V~A~D~D~-----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~   73 (100)
T 3k6f_A           24 KVVDSDRPE-----GSKFRLTGKGVDQDPKGTFRINENTGSVSVTRT----------------------LDRE---TIAT   73 (100)
T ss_dssp             ECEETTCCT-----TCEEEEEEBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCSE
T ss_pred             EEEEEcCCC-----CEEEEEeCCCCCCCcCCEEEEECCCCEEEECcc----------------------cCCc---CCCE
Confidence            688999996     4899998632   22468999999999999999                      7887   6789


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      |.|.|+|+|.|+|++++++.|.|+|.|
T Consensus        74 y~l~V~A~D~g~p~l~~~~~v~I~V~D  100 (100)
T 3k6f_A           74 YQLYVETTDASGKTLEGPVPLEVIVID  100 (100)
T ss_dssp             EEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCcccceEEEEEEEEC
Confidence            999999999999999999999999987

>3k6d_A T-cadherin; cell adhesion; 1.80A {Xenopus laevis} PDB: 2v37_A

Probab=99.70  E-value=3.8e-17  Score=103.34  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=64.4

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeC---CCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKA---PGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~---~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      +|+|+|+|.     .|+|+|...   ++....|.||+.||.|++.++                      ||||   .+..
T Consensus        23 ~v~A~D~D~-----~i~Ysi~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~   72 (99)
T 3k6d_A           23 RVVVSDRIP-----GSKIKLYGKGVDQEPKGIFKINENSGEVSVTKA----------------------LDRE---AIPS   72 (99)
T ss_dssp             ECBCSSCCT-----TCEEEEESBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCCE
T ss_pred             EEEEECCCC-----cEEEEEecCcCCCCCCCEEEEECCceEEEECcC----------------------CCcc---cCce
Confidence            678999986     589999853   222468999999999999999                      7887   6679


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      |.|.|.|+|.|+|++++++.|.|+|.|
T Consensus        73 y~l~V~A~D~g~~~l~~~~~v~I~V~D   99 (99)
T 3k6d_A           73 YQLQVETTDENGKTIEGPVDLEILVID   99 (99)
T ss_dssp             EEEEEEEECTTCCEEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCCceeeEEEEEEEEEC
Confidence            999999999999999999999999987

>3qrb_A Cadherin-1; cell adhesion; HET: PGE; 1.80A {Mus musculus} PDB: 1ff5_A 3lng_A 2qvf_B 1edh_A 3lne_A 1q1p_A 3lni_A 3q2l_A* 3q2n_A* 3lnh_A 3lnf_A 2o72_A 1suh_A

Probab=99.60  E-value=2.1e-15  Score=106.53  Aligned_cols=80  Identities=31%  Similarity=0.465  Sum_probs=68.2

Q ss_pred             CEEEEEeCCCCC--CCCcEEEEEEeCCC---CCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCC
Q psy9968           1 MQVHATDVDPPS--NGGTIQYRIIKAPG---ERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPE   74 (118)
Q Consensus         1 ~~v~A~D~D~~~--~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~   74 (118)
                      ++|+|+|+|.+.  .|+.++|+|....+   ...+|.|++.+|.|++. +.                      ||||   
T Consensus       128 ~~v~A~D~D~~~~~~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~----------------------LD~E---  182 (213)
T 3qrb_A          128 MKVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG----------------------LDRE---  182 (213)
T ss_dssp             EECCEECCSCTTTSSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSC----------------------CCTT---
T ss_pred             EEEEEEeCCCCCCCcCcEEEEEEccCCCCCCcCCeEEEECCCcEEEEccCC----------------------CCCc---
Confidence            368899999982  47899999986321   34589999999999997 66                      7887   


Q ss_pred             CcceEEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          75 REKEIYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        75 ~~~~~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      ....|.|.|.|+|.|.|+++++++|.|+|.|
T Consensus       183 ~~~~y~l~V~A~D~g~~~~s~t~~v~I~V~D  213 (213)
T 3qrb_A          183 SYPTYTLVVQAADLQGEGLSTTAKAVITVKD  213 (213)
T ss_dssp             TCCEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             cCceEEEEEEEEeCCCCCceEEEEEEEEEEC
Confidence            6679999999999999999999999999987

>3lnd_A CDH6 protein, cadherin 6; cell adhesion, cell membrane, membrane, transmembr; 2.82A {Mus musculus}

Probab=99.59  E-value=3.5e-15  Score=105.08  Aligned_cols=75  Identities=37%  Similarity=0.591  Sum_probs=64.9

Q ss_pred             EEEEEeCCC---CCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCCcc
Q psy9968           2 QVHATDVDP---PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPEREK   77 (118)
Q Consensus         2 ~v~A~D~D~---~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~   77 (118)
                      +|.|+|+|.   | .|++++|+|..+.   .+|.|++.+|.|++. +.                      ||||   ...
T Consensus       127 ~v~A~D~D~~~~g-~n~~i~Y~i~~~~---~~F~Id~~tG~i~~~~~~----------------------lD~E---~~~  177 (207)
T 3lnd_A          127 QVTATDADDPTYG-NSAKVVYSILQGQ---PYFSVESETGIIKTALLN----------------------MDRE---NRE  177 (207)
T ss_dssp             ECCEECSSCTTSS-STTCCEEEEEESG---GGEEECTTTCEEEECCSS----------------------CCC-----CC
T ss_pred             EEEEEeCCCCCCC-CCcEEEEEEcCCC---CCEEEcCCCcEEEECccc----------------------CCcc---cCC
Confidence            688999998   6 6889999999543   489999999999998 77                      7887   667


Q ss_pred             eEEEEEEEEECCCC--CCeeEEEEEEEEEe
Q psy9968          78 EIYITVIAEDNGTP--QLSDACTMKITVED  105 (118)
Q Consensus        78 ~~~l~v~a~D~g~p--~~s~~~~v~I~v~D  105 (118)
                      .|.|.|.|+|.|.|  +++++++|.|+|.|
T Consensus       178 ~y~l~V~A~D~g~~~~~~s~t~~v~I~V~D  207 (207)
T 3lnd_A          178 QYQVVIQAKDMGGQMGGLSGTTTVNITLTD  207 (207)
T ss_dssp             EEEEEEEEESGGGCTTCBEEEEEEEEEEEC
T ss_pred             EEEEEEEEEECCCCCCCcEeEEEEEEEEeC
Confidence            99999999999887  89999999999987

>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC) domain, beta barrel, IG-domain L domain swapped dimer interface; 2.10A {Gallus gallus}

Probab=99.59  E-value=9e-15  Score=102.81  Aligned_cols=74  Identities=34%  Similarity=0.508  Sum_probs=65.1

Q ss_pred             EEEEEeCCC---CCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCCcc
Q psy9968           2 QVHATDVDP---PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPEREK   77 (118)
Q Consensus         2 ~v~A~D~D~---~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~   77 (118)
                      +|.|+|+|.   | .|++++|+|..+.   .+|.|+ .+|.|++. +.                      ||||   ...
T Consensus       125 ~v~A~D~D~~~~g-~n~~i~Y~i~~~~---~~F~I~-~tG~i~~~~~~----------------------LD~E---~~~  174 (203)
T 3ppe_A          125 KVTAEDADDPTVA-GHATVTYQIIKGN---EYFTVD-DSGVIFTARAD----------------------LDRE---SQS  174 (203)
T ss_dssp             ECCEECCSCTTSS-STTCEEEEEEEST---TTEEEC-TTSEEEESCSC----------------------CCTT---TCS
T ss_pred             EEEEEcCCCcCCC-CceEEEEEEeCCC---CcEEEe-CCeEEEECCcC----------------------CCcc---cCC
Confidence            688999994   6 6899999999643   389999 99999998 77                      7887   667


Q ss_pred             eEEEEEEEEEC-CCCCCeeEEEEEEEEEe
Q psy9968          78 EIYITVIAEDN-GTPQLSDACTMKITVED  105 (118)
Q Consensus        78 ~~~l~v~a~D~-g~p~~s~~~~v~I~v~D  105 (118)
                      .|.|.|.|+|. |.|+++++++|.|+|.|
T Consensus       175 ~y~l~V~A~D~~G~p~~s~t~~v~I~V~D  203 (203)
T 3ppe_A          175 AYEIIVKAKDALGLTGESSTATVIIRLTD  203 (203)
T ss_dssp             EEEEEEEEEETTCCCCSSSEEEEEEEEEC
T ss_pred             EEEEEEEEEeCCCCCCCeEEEEEEEEEEC
Confidence            99999999998 77889999999999987

>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A

Probab=99.58  E-value=2.6e-15  Score=106.44  Aligned_cols=78  Identities=26%  Similarity=0.401  Sum_probs=66.5

Q ss_pred             EEEEEeCCC--CCCCCcEEEEEEeCCCC---CccEEEeCCCCEEEEe---eeecCCCCcccceeeeeeeeecccCCCCCC
Q psy9968           2 QVHATDVDP--PSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTL---YALDRDDPEREKEIYITTDIRVQALDRDDP   73 (118)
Q Consensus         2 ~v~A~D~D~--~~~n~~i~y~i~~~~~~---~~~F~id~~tG~i~~~---~~ld~e~~~~~~~~~~~~~~~~~~lDre~~   73 (118)
                      +|+|+|+|.  + .|++++|+|....+.   ..+|.||+.+|.|++.   +.                      ||||  
T Consensus       129 ~v~A~D~D~~~g-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~~~----------------------LD~E--  183 (218)
T 3k5r_A          129 RMTAFDADDPAT-DNALLRYNIRQQTPDKPSPNMFYIDPEKGDIVTVVSPAL----------------------LDRE--  183 (218)
T ss_dssp             ECCCSCSSSSCG-GGGCEEEEEEEEESCCSCSCSEEECTTTCEEEECSCGGG----------------------CCGG--
T ss_pred             EEEEEeCCCCCC-CCcEEEEEEecCCCCCCcCCEEEEECCccEEEEeccCCC----------------------CCcc--
Confidence            678999999  5 689999999864332   2579999999999987   46                      7887  


Q ss_pred             CC--cceEEEEEEEEECC--CCCCeeEEEEEEEEEe
Q psy9968          74 ER--EKEIYITVIAEDNG--TPQLSDACTMKITVED  105 (118)
Q Consensus        74 ~~--~~~~~l~v~a~D~g--~p~~s~~~~v~I~v~D  105 (118)
                       .  ...|.|.|.|+|.|  .|+++++++|.|+|.|
T Consensus       184 -~~~~~~y~l~V~a~D~gg~~p~~sst~~v~I~V~D  218 (218)
T 3k5r_A          184 -TLENPKYELIIEAQDMAGLDVGLTGTATATIVIDD  218 (218)
T ss_dssp             -GCSCSEEEEEEEEEECSSTTTTCEEEEEEEEEEEC
T ss_pred             -ccCCCeEEEEEEEEECCCCCCCeeEEEEEEEEEEC
Confidence             5  56999999999999  8899999999999987

>2qvi_A Cadherin-2; beta barrel, strand SWAP, domain SWAP, calcium, cell adhesion, cleavage on PAIR of basic residues, glycoprotein, membrane; 3.01A {Mus musculus} SCOP: b.1.6.1 b.1.6.1 PDB: 1ncj_A

Probab=99.58  E-value=1.8e-15  Score=107.32  Aligned_cols=78  Identities=33%  Similarity=0.476  Sum_probs=67.2

Q ss_pred             EEEEEeCCC--CCCCCcEEEEEEeCCC---CCccEEEeCCCCEEEEe-eeecCCCCcccceeeeeeeeecccCCCCCCCC
Q psy9968           2 QVHATDVDP--PSNGGTIQYRIIKAPG---ERAKFSIDKETGIVKTL-YALDRDDPEREKEIYITTDIRVQALDRDDPER   75 (118)
Q Consensus         2 ~v~A~D~D~--~~~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~-~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~   75 (118)
                      +|.|+|+|.  | .|++++|+|..+.+   ...+|.|++.||.|++. +.                      ||||   .
T Consensus       129 ~v~A~D~D~~~g-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~~----------------------LD~E---~  182 (215)
T 2qvi_A          129 TVTAIDADDPNA-LNGMLRYRILSQAPSTPSPNMFTINNETGDIITVAAG----------------------LDRE---K  182 (215)
T ss_dssp             ECCCBCSSCTTS-TTTCCCCEEEECSSCCSSTTCEEECTTTCEEEECSCC----------------------CCTT---T
T ss_pred             EEEEEeCCCCCC-CCcEEEEEEecCCCCCCcCCeEEEcCCCcEEEEecCC----------------------CCcc---c
Confidence            678999998  5 68999999996532   24689999999999996 66                      7887   6


Q ss_pred             cceEEEEEEEEECCCC---CCeeEEEEEEEEEe
Q psy9968          76 EKEIYITVIAEDNGTP---QLSDACTMKITVED  105 (118)
Q Consensus        76 ~~~~~l~v~a~D~g~p---~~s~~~~v~I~v~D  105 (118)
                      ...|.|.|.|+|.|+|   +++++++|.|+|.|
T Consensus       183 ~~~y~l~V~a~D~g~~p~~~ls~t~~v~I~V~D  215 (215)
T 2qvi_A          183 VQQYTLIIQATDMEGNPTYGLSNTATAVITVTD  215 (215)
T ss_dssp             CSEEEEEEECCTTTTCTTTSCCCEEEEEEEECC
T ss_pred             CCeEEEEEEEEECCCCCCCCcceEEEEEEEEEC
Confidence            6799999999999887   79999999999987

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.50  E-value=3.8e-14  Score=102.33  Aligned_cols=78  Identities=26%  Similarity=0.369  Sum_probs=64.9

Q ss_pred             EEEEeCCCCCCCCcEEEEEEeCCCC---CccEEEeC-CCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           3 VHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDK-ETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         3 v~A~D~D~~~~n~~i~y~i~~~~~~---~~~F~id~-~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      |+|+|+|.| .|++|+|+|......   ...|.||+ .||.|++.+.                      ||||   ....
T Consensus       154 v~A~D~D~g-~N~~v~Ysi~~~~~~~~~~~~F~Id~~~tG~i~~~~~----------------------LD~E---~~~~  207 (242)
T 4apx_B          154 NGATDIDDG-PNGQIEYVIQYNPEDPTSNDTFEIPLMLTGNVVLRKR----------------------LNYE---DKTR  207 (242)
T ss_dssp             TSEECCSSG-GGGCEEEEEECCTTSTTHHHHEECSSTTTCCEEECSC----------------------CCTT---TCCE
T ss_pred             cccccCCCC-cCCceEEEEecCCCCcccccceEEcCCCceEEEECCc----------------------CChh---hCCE
Confidence            569999999 799999999864332   24799995 5999999999                      6887   5679


Q ss_pred             EEEEEEEEECCCC---CCeeEEEEEEEEEeC
Q psy9968          79 IYITVIAEDNGTP---QLSDACTMKITVEDI  106 (118)
Q Consensus        79 ~~l~v~a~D~g~p---~~s~~~~v~I~v~Dv  106 (118)
                      |.|.|.|+|.|.|   ++++++.|+|+|+--
T Consensus       208 y~l~V~A~D~G~~~~~~~~~~~~vtVnVe~~  238 (242)
T 4apx_B          208 YYVIIQANDRAQNLNERRTTTTTLTVDLEHH  238 (242)
T ss_dssp             EEEEEEEEECCSSGGGCCEEEEEEEEEEECC
T ss_pred             EEEEEEEEECCcCchhcccCCceEEEEEeec
Confidence            9999999999987   478889999998754

>4apx_B Protocadherin-15, otocadherin; cell adhesion, hearing, deafness, CDH23, PCDH15; HET: MES; 1.65A {Mus musculus} PDB: 4aq8_C 4aqa_B* 4aqe_B* 4axw_B*

Probab=99.49  E-value=1.6e-13  Score=99.09  Aligned_cols=89  Identities=21%  Similarity=0.219  Sum_probs=62.8

Q ss_pred             eCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEEEE
Q psy9968           7 DVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAE   86 (118)
Q Consensus         7 D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~a~   86 (118)
                      |.|.+ .|+.++|+|....  ..+|.|++.+|.+++...                   .+.||||.......+.+.+.+.
T Consensus        44 ~~d~~-~n~~i~ysl~~~~--~~~f~id~~tg~~~l~~t-------------------~~~LDrE~~~~~~~~~~~v~~~  101 (242)
T 4apx_B           44 GTAGG-PDPTIELSLKDNV--DYWVLLDPVKQMLFLNST-------------------GRVLDRDPPMNIHSIVVQVQCV  101 (242)
T ss_dssp             SCBSS-SSCSEEEEEESCG--GGCEEEETTTTEEEECCT-------------------TSCCCCSTTTCCCEEEEEEEEE
T ss_pred             CCCCC-CCCEEEEEEecCC--CceEEECCCCCEEEEEec-------------------CCceeccCCCceEEEEEEEEeE
Confidence            34445 6889999998433  358999999999987532                   0117887332223445556665


Q ss_pred             ECCCCCCeeEEEEEEEEEeCCCCCCeeCCCCC
Q psy9968          87 DNGTPQLSDACTMKITVEDINDNEPMFDRVQY  118 (118)
Q Consensus        87 D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~Y  118 (118)
                      +.+. +..+.+.|.|.|.|+|||+|+|.+..|
T Consensus       102 ~~~~-~~~~~~~V~I~V~DvNDn~P~F~~~~y  132 (242)
T 4apx_B          102 NKKV-GTVIYHEVRIVVRDRNDNSPTFKHESY  132 (242)
T ss_dssp             ETTT-CCEEEEEEEEEEECCCCCCCEESSSCE
T ss_pred             CCCC-CeEEEEEEEEEEEeCCCCCCcccceee
Confidence            6542 456778899999999999999998876

>1wuz_A Pcdha4 protein, CNR-EC1; cadherin, heteronuclear protocadherin, cell adhesion; NMR {Mus musculus}

Probab=99.33  E-value=1.3e-13  Score=87.63  Aligned_cols=79  Identities=23%  Similarity=0.307  Sum_probs=52.9

Q ss_pred             EEeCCCCC-CCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCC-CcceEEEE
Q psy9968           5 ATDVDPPS-NGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPE-REKEIYIT   82 (118)
Q Consensus         5 A~D~D~~~-~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~-~~~~~~l~   82 (118)
                      |.|+|.+. ..+.++|+|..+ +...+|.||+.||.|++.++                      ||||..+ +...|.+.
T Consensus        23 a~D~~~~~~~~~~~~y~i~~~-~~~~~F~Id~~tG~i~~~~~----------------------LDRE~~~~~~~~~~~~   79 (103)
T 1wuz_A           23 AQDLGLELTELVPRLFRVASK-DRGDLLEVNLQNGILFVNSR----------------------IDREELCGRSAECSIH   79 (103)
T ss_dssp             HHHHTCCHHHHTTTTBCCBCS-SCSCSEEEETTTTEEEECSC----------------------CSHHHHCSSSSSCEEE
T ss_pred             EeccCCCCcccccEEEEEEeC-CCccEEEEECCeEEEEECCc----------------------CccccccCCCCcEEEE
Confidence            66776541 114689999853 33579999999999999999                      5665211 11234444


Q ss_pred             EEEEECCCCCCeeEEEEEEEEEeCCCC
Q psy9968          83 VIAEDNGTPQLSDACTMKITVEDINDN  109 (118)
Q Consensus        83 v~a~D~g~p~~s~~~~v~I~v~DvNDn  109 (118)
                      +.+... .| + ..+.|.|+|.|+|||
T Consensus        80 ~~v~~~-~p-~-~~~~v~I~V~DiNDN  103 (103)
T 1wuz_A           80 LEVIVD-RP-L-QVFHVEVEVRDINDN  103 (103)
T ss_dssp             EEEEET-TT-T-EEEEEEEEEECCSCC
T ss_pred             EEEEEC-CC-C-EEEEEEEEEEEcCCC
Confidence            444432 33 3 488999999999998

>2yrl_A KIAA1837 protein; PKD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.00  E-value=2.8  Score=25.50  Aligned_cols=30  Identities=13%  Similarity=0.276  Sum_probs=25.1

Q ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEEEEeCCC
Q psy9968          77 KEIYITVIAEDNGTPQLSDACTMKITVEDIND  108 (118)
Q Consensus        77 ~~~~l~v~a~D~g~p~~s~~~~v~I~v~DvND  108 (118)
                      ..|.+.+.++|..+  .+++.++.|+|...+.
T Consensus        69 G~y~f~LTVtD~~G--~s~s~~v~VtV~~~~~   98 (102)
T 2yrl_A           69 GTYVFTLTVKDERN--LQSQSSVNVIVKEESG   98 (102)
T ss_dssp             SEEEEEEEEEBTTC--CEEEEEEEEEEECCSS
T ss_pred             eEEEEEEEEEeCCC--CEEEeEEEEEEcCCCC
Confidence            58999999999864  6788899999987654

>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}

Probab=84.91  E-value=11  Score=29.01  Aligned_cols=27  Identities=37%  Similarity=0.503  Sum_probs=25.0

Q ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEEE
Q psy9968          77 KEIYITVIAEDNGTPQLSDACTMKITV  103 (118)
Q Consensus        77 ~~~~l~v~a~D~g~p~~s~~~~v~I~v  103 (118)
                      ..|.|.++++|.+.|+++++..|.|+|
T Consensus       410 ~tl~f~LtVTD~~~p~lTs~~rViVtV  436 (437)
T 2yhg_A          410 KDIHILLTLRDNGSPNLYAYRRVVINV  436 (437)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEEE
T ss_pred             cEEEEEEEEEeCCCCCccEEeEEEEEe
Confidence            589999999999999999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	118
d1l3wa1	100	b.1.6.1 (A:1-100) C-cadherin ectodomain {African c	2e-06
d1l3wa4	107	b.1.6.1 (A:327-433) C-cadherin ectodomain {African	6e-06
d2omzb1	104	b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human	2e-05
d1l3wa2	113	b.1.6.1 (A:101-213) C-cadherin ectodomain {African	8e-05
d1edha2	112	b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse	1e-04
d1ncia_	102	b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus muscu	3e-04

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.9 bits (95), Expect = 2e-06
 Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 29/108 (26%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEI 57
            ++     +       + Y I     +   +  F I+ ETG +                 
Sbjct: 19  KRLVQIKSNKDRFN-KVYYSITGQGADNPPQGVFRIEWETGWMLVTR------------- 64

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                         D E   +  ++  A       + +   + I V D
Sbjct: 65  ------------PLDREEYDKYVLSSHAVSENGSPVEEPMEITINVID 100

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 40.0 bits (92), Expect = 6e-06
 Identities = 13/96 (13%), Positives = 28/96 (29%), Gaps = 21/96 (21%)

Query: 11  PSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDR 70
           P      +             +++K+ GIV     LDR+                     
Sbjct: 33  PDKQQIQKLSYFIGNDPARWLTVNKDNGIVTGNGNLDRESE------------------- 73

Query: 71  DDPEREKEIYITVIAEDNGTPQLSDACTMKITVEDI 106
               +     + ++  D+G    +   T+ + V D+
Sbjct: 74  --YVKNNTYTVIMLVTDDGVSVGTGTGTLILHVLDV 107

>d2omzb1 b.1.6.1 (B:-2-101) E-cadherin (epithelial) {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 2e-05
 Identities = 18/108 (16%), Positives = 29/108 (26%), Gaps = 29/108 (26%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPG---ERAKFSIDKETGIVKTLYALDRDDPEREKEI 57
             +     +    G  + Y I            F I++ETG +K    LDR+        
Sbjct: 22  KNLVQIKSNKDKEG-KVFYSITGQGADTPPVGVFIIERETGWLKVTEPLDRER------- 73

Query: 58  YITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                                  +   A  +    + D   + ITV D
Sbjct: 74  ------------------IATYTLFSHAVSSNGNAVEDPMEILITVTD 103

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 37.0 bits (84), Expect = 8e-05
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 72  DPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
           D E+  E  +TV A D     LS      I + D
Sbjct: 80  DREKFPEYTLTVQATDLEGAGLSVEGKAIIQITD 113

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]} Length = 112

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 44  YALDRDDPEREKEIYITTDIRVQAL----DRDDPEREKEIYITVIAEDNGTPQLSDACTM 99
           Y +   DPE   +   T +     +       D E      + V A D     LS     
Sbjct: 47  YTIVSQDPELPHKNMFTVNRDTGVISVLTSGLDRESYPTYTLVVQAADLQGEGLSTTAKA 106

Query: 100 KITVED 105
            ITV+D
Sbjct: 107 VITVKD 112

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.6 bits (81), Expect = 3e-04
 Identities = 12/107 (11%), Positives = 23/107 (21%), Gaps = 27/107 (25%)

Query: 1   MQVHATDVDPPSNGGTIQYRIIKAPGERAK--FSIDKETGIVKTLYALDRDDPEREKEIY 58
            ++         N             +     F I+  +G +                  
Sbjct: 21  QELVRIRSGRDKNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTK-------------- 66

Query: 59  ITTDIRVQALDRDDPEREKEIYITVIAEDNGTPQLSDACTMKITVED 105
                        D E     ++   A D    Q+ +   + I V D
Sbjct: 67  -----------PLDRELIARFHLRAHAVDINGNQVENPIDIVINVID 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	118
d1l3wa4	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.72
d1l3wa1	100	C-cadherin ectodomain {African clawed frog (Xenopu	99.69
d1edha2	112	E-cadherin (epithelial) {Mouse (Mus musculus) [Tax	99.67
d2omzb1	104	E-cadherin (epithelial) {Human (Homo sapiens) [Tax	99.66
d1l3wa2	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.64
d1ncia_	102	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.64
d1l3wa5	107	C-cadherin ectodomain {African clawed frog (Xenopu	99.57
d1op4a_	136	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.53
d1ncja2	114	N-cadherin (neural) {Mouse (Mus musculus) [TaxId:	99.52
d1l3wa3	113	C-cadherin ectodomain {African clawed frog (Xenopu	99.36
d1u2ca1	103	Dystroglycan, N-terminal domain {Mouse (Mus muscul	93.7

>d1l3wa4 b.1.6.1 (A:327-433) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.72  E-value=4.5e-18  Score=107.00  Aligned_cols=80  Identities=23%  Similarity=0.336  Sum_probs=67.6

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCC-CcceEE
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPE-REKEIY   80 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~-~~~~~~   80 (118)
                      ++.|+|+|.+ .|+.++|+|....  ..+|.|++.+|.|++.+.|                      |||... ....|.
T Consensus        27 ~v~A~D~D~~-~~~~i~y~i~~~~--~~~F~id~~tG~i~~~~~l----------------------D~E~~~~~~~~y~   81 (107)
T d1l3wa4          27 SLVAQDPDKQ-QIQKLSYFIGNDP--ARWLTVNKDNGIVTGNGNL----------------------DRESEYVKNNTYT   81 (107)
T ss_dssp             ECCEECCCTT-CCCCEEEEECCCS--SCCCEEETTTTEEEECSCC----------------------CTTSSSCCSSCCE
T ss_pred             EeEEecCCcC-cCCceeEEecCCC--cccceeccccceEEEcccc----------------------ChhhccccCCeEE
Confidence            6789999998 6899999997533  3589999999999999995                      554221 346899


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDI  106 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~Dv  106 (118)
                      +.|.|+|.|.|+++++++|.|+|.||
T Consensus        82 l~v~a~D~g~p~~~~t~~v~V~V~DV  107 (107)
T d1l3wa4          82 VIMLVTDDGVSVGTGTGTLILHVLDV  107 (107)
T ss_dssp             EEEEEEECSSSCCCCCEEEECCBCCC
T ss_pred             EEEEEEECCcCCcEEEEEEEEEEEeC
Confidence            99999999999999999999999986

>d1l3wa1 b.1.6.1 (A:1-100) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.69  E-value=6.9e-17  Score=100.64  Aligned_cols=78  Identities=18%  Similarity=0.257  Sum_probs=68.4

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCCC---CccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPGE---RAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~~---~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      .+.|.|+|.+ .|+.++|+|...+..   ..+|.||+.||.|++.+.                      ||||   ..+.
T Consensus        20 ~v~~~~~D~~-~n~~i~Y~i~~~~~~~~~~~~F~Id~~tG~I~~~~~----------------------lDrE---~~~~   73 (100)
T d1l3wa1          20 RLVQIKSNKD-RFNKVYYSITGQGADNPPQGVFRIEWETGWMLVTRP----------------------LDRE---EYDK   73 (100)
T ss_dssp             EEEECCCSGG-GSSCEEEEEEEBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCCE
T ss_pred             EEEEEECCCC-CCCcEEEEEEeCCCCCCccccEEEeCCCCEEEEeee----------------------cccc---cCCE
Confidence            5778899998 689999999964332   357999999999999999                      7887   6679


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      |.|.|.|+|.|+|++++++.|.|+|+|
T Consensus        74 y~l~V~a~D~g~~~~~~~~~v~I~V~D  100 (100)
T d1l3wa1          74 YVLSSHAVSENGSPVEEPMEITINVID  100 (100)
T ss_dssp             EEEEEEEEESSSCBCSCCEEEEEEEEC
T ss_pred             EEEEEEEEECCCCcEEeEEEEEEEEeC
Confidence            999999999999999999999999987

>d1edha2 b.1.6.1 (A:102-213) E-cadherin (epithelial) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: E-cadherin (epithelial)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=1.8e-16  Score=99.85  Aligned_cols=80  Identities=30%  Similarity=0.431  Sum_probs=66.8

Q ss_pred             EEEEEeCCCCC--CCCcEEEEEEeCC---CCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCc
Q psy9968           2 QVHATDVDPPS--NGGTIQYRIIKAP---GERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPERE   76 (118)
Q Consensus         2 ~v~A~D~D~~~--~n~~i~y~i~~~~---~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~   76 (118)
                      +|.|+|+|.|.  .|++++|+|....   ....+|.|++.+|.|++.+..                     ||||   .+
T Consensus        28 ~v~A~D~D~g~~~~n~~v~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~---------------------lD~E---~~   83 (112)
T d1edha2          28 KVSATDADDDVNTYNAAIAYTIVSQDPELPHKNMFTVNRDTGVISVLTSG---------------------LDRE---SY   83 (112)
T ss_dssp             ECCEECCSCTTTCSTTCCEEEEEEEESCCSCSCSEEECTTTCEEEECSSC---------------------CCTT---TC
T ss_pred             EEEEEecccCCccccceEEEEEecCCccccceeEEEEecccceEEEEecc---------------------cccc---cC
Confidence            67899999873  4678999998632   224689999999999875432                     7887   66


Q ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          77 KEIYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        77 ~~~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      ..|.|.|.|+|.|.|+++++++|.|+|.|
T Consensus        84 ~~y~l~V~a~D~g~~~~~~~~~v~I~V~D  112 (112)
T d1edha2          84 PTYTLVVQAADLQGEGLSTTAKAVITVKD  112 (112)
T ss_dssp             CEEEEEEEEETGGGTSCEEEEEEEEEEEC
T ss_pred             cEEEEEEEEEECCCCccEEEEEEEEEEEC
Confidence            79999999999999999999999999987

>d1l3wa2 b.1.6.1 (A:101-213) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.64  E-value=1.4e-16  Score=100.73  Aligned_cols=80  Identities=33%  Similarity=0.385  Sum_probs=67.0

Q ss_pred             EEEEEeCCCCC--CCCcEEEEEEeCCC---CCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCc
Q psy9968           2 QVHATDVDPPS--NGGTIQYRIIKAPG---ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPERE   76 (118)
Q Consensus         2 ~v~A~D~D~~~--~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~   76 (118)
                      +|.|+|+|.+.  .|+++.|+|.....   ...+|.|++.||.|++.+..                     ||||   ..
T Consensus        29 ~v~A~D~D~~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~---------------------LD~E---~~   84 (113)
T d1l3wa2          29 AVSATDEDDNIDSLNGVLSYSILKQDPEEPIPNLFTINRETGVISLIGTG---------------------LDRE---KF   84 (113)
T ss_dssp             ECCEECCSCCSSSSTTCCEEEEEEESSCCSCSCSEEECTTTCEEEECSCC---------------------CCTT---TC
T ss_pred             EEEeecccccccccceEEEEEEecCCCCccccceeeeeecceeEEEeccc---------------------cCcc---cC
Confidence            57899999873  46889999986432   23689999999999986432                     7887   66


Q ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          77 KEIYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        77 ~~~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      ..|.|.|.|+|.|+|+++++++|.|+|.|
T Consensus        85 ~~y~l~V~a~D~~~~~~~~~~~v~I~V~D  113 (113)
T d1l3wa2          85 PEYTLTVQATDLEGAGLSVEGKAIIQITD  113 (113)
T ss_dssp             CEEEEEEEEEHHHHTSCEEECCEEEEEEC
T ss_pred             CEEEEEEEEEECCCCCcEEEEEEEEEEEC
Confidence            79999999999999999999999999987

>d1ncia_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=3.9e-16  Score=97.55  Aligned_cols=78  Identities=17%  Similarity=0.204  Sum_probs=67.3

Q ss_pred             EEEEEeCCCCCCCCcEEEEEEeCCC---CCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcce
Q psy9968           2 QVHATDVDPPSNGGTIQYRIIKAPG---ERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKE   78 (118)
Q Consensus         2 ~v~A~D~D~~~~n~~i~y~i~~~~~---~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~   78 (118)
                      .+.+.|.|.+ .|+.+.|+|...+.   ...+|.||+.||.|++.++                      ||||   ....
T Consensus        22 ~i~~~d~D~~-~n~~v~Y~i~~~~~~~~~~~~F~Id~~tG~i~~~~~----------------------LDrE---~~~~   75 (102)
T d1ncia_          22 ELVRIRSGRD-KNLSLRYSVTGPGADQPPTGIFIINPISGQLSVTKP----------------------LDRE---LIAR   75 (102)
T ss_dssp             EEEECCBGGG-GTSCCEEEEESBTTTBSSTTSEEECTTTCEEEECSC----------------------CCTT---TCSE
T ss_pred             EEEEEeCCCC-CCceEEEEEecCCCCCCcccceeccCCCCcEEEeee----------------------cchh---cCcc
Confidence            4677888888 68999999985322   2358999999999999999                      7887   6789


Q ss_pred             EEEEEEEEECCCCCCeeEEEEEEEEEe
Q psy9968          79 IYITVIAEDNGTPQLSDACTMKITVED  105 (118)
Q Consensus        79 ~~l~v~a~D~g~p~~s~~~~v~I~v~D  105 (118)
                      |.|.|.|+|.|.|++++++.|.|+|+|
T Consensus        76 y~l~V~A~D~g~~~~~~~~~v~I~V~D  102 (102)
T d1ncia_          76 FHLRAHAVDINGNQVENPIDIVINVID  102 (102)
T ss_dssp             EEEEEEEECTTSCBSSCCEEEEEEEEC
T ss_pred             eEEEEEEEECCCCceeeeEEEEEEEeC
Confidence            999999999999999999999999987

>d1l3wa5 b.1.6.1 (A:434-540) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.57  E-value=1.4e-16  Score=99.74  Aligned_cols=83  Identities=12%  Similarity=0.103  Sum_probs=63.3

Q ss_pred             EEEEEeCCCCCCCC-cEEEEEEeCCCCCccEEE-eCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceE
Q psy9968           2 QVHATDVDPPSNGG-TIQYRIIKAPGERAKFSI-DKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEI   79 (118)
Q Consensus         2 ~v~A~D~D~~~~n~-~i~y~i~~~~~~~~~F~i-d~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~   79 (118)
                      +|+|+|+|.+ .|+ .+.|+|..+...  .|.+ ....|.+...+.                      ||+|   .+..|
T Consensus        23 ~v~AtD~D~~-~n~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~----------------------ld~e---~~~~y   74 (107)
T d1l3wa5          23 VLTISDADIP-PNTYPYKVSLSHGSDL--TWKAELDSKGTSMLLSP----------------------TQQL---KKGDY   74 (107)
T ss_dssp             EEEBCCSSCT-TTTCCCCCBCCSCSSS--SCBCCBCTTSSEEEEBC----------------------SSCC---CSSCB
T ss_pred             eEEEEcCccC-ccceeEeeeeeccccc--ccccccccceeeeeeec----------------------cccc---cceeE
Confidence            5899999999 455 689999854433  3444 444555555566                      6777   55689


Q ss_pred             EEEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeC
Q psy9968          80 YITVIAEDNGTPQLSDACTMKITVEDINDNEPMFD  114 (118)
Q Consensus        80 ~l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~  114 (118)
                      .|.|.|+|+|+|+++  +++.|+|.|+|||+|.|+
T Consensus        75 ~l~V~a~D~G~p~~~--~tv~V~V~Dc~dn~~~c~  107 (107)
T d1l3wa5          75 SIYVLLSDAQNNPQL--TVVNATVCSCEGKAIKCQ  107 (107)
T ss_dssp             CCEEECCSSSCCCEE--EECCEEECSCSSSCCCCC
T ss_pred             EEEEEEEeCCCCceE--EEEEEEEEEeeCCcCccC
Confidence            999999999998764  568999999999999874

>d1op4a_ b.1.6.1 (A:) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.1e-14  Score=95.21  Aligned_cols=82  Identities=20%  Similarity=0.309  Sum_probs=66.2

Q ss_pred             CEEEEEeCCCCCCCCcEEEEEEeCCCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEE
Q psy9968           1 MQVHATDVDPPSNGGTIQYRIIKAPGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIY   80 (118)
Q Consensus         1 ~~v~A~D~D~~~~n~~i~y~i~~~~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~   80 (118)
                      ++|+|+|+|.   ++.+.|++...    ..|.|++ +|.|++.+.                      ||+|   .. .|.
T Consensus        33 ~~V~a~D~d~---~~~~~y~~~~~----~~F~i~~-~G~I~~~~~----------------------ld~e---~~-~y~   78 (136)
T d1op4a_          33 LNVKFSNCNR---KRKVQYESSEP----ADFKVDE-DGTVYAVRS----------------------FPLT---AE-QAK   78 (136)
T ss_dssp             EECCCBCCSS---CCCEEEECCCS----SEEEEET-TTEEEEESC----------------------CSCS---SS-CEE
T ss_pred             EEeEeecCCc---cccceeccccc----eeeeccc-cEEEEEecc----------------------cCcc---cc-eEE
Confidence            3678999985   46799998522    3799998 599999999                      6776   33 599


Q ss_pred             EEEEEEECCCCCCeeEEEEEEEEEeCCCCCCeeCCCC
Q psy9968          81 ITVIAEDNGTPQLSDACTMKITVEDINDNEPMFDRVQ  117 (118)
Q Consensus        81 l~v~a~D~g~p~~s~~~~v~I~v~DvNDn~P~F~~~~  117 (118)
                      |.|.|+|.|.|.+ +.+.|.|.+.|.|||.|.|....
T Consensus        79 l~V~A~D~g~~~~-~~t~V~i~v~d~nd~~p~~~~~~  114 (136)
T d1op4a_          79 FLIYAQDKETQEK-WQVAVNLSREPTLTEEPMKEPHE  114 (136)
T ss_dssp             EEEEEEETTTTEE-EEEEEEECCCCCCCCCCSSCCCC
T ss_pred             EEEEEEecCCcce-eeeEEEEEEcccCCCCCcccCCC
Confidence            9999999998664 56789999999999999997554

>d1ncja2 b.1.6.1 (A:102-215) N-cadherin (neural) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: N-cadherin (neural)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.52  E-value=2.1e-14  Score=90.32  Aligned_cols=79  Identities=33%  Similarity=0.483  Sum_probs=59.5

Q ss_pred             EEEEEeCCCCC-CCCcEEEEEEeCC---CCCccEEEeCCCCEEE-EeeeecCCCCcccceeeeeeeeecccCCCCCCCCc
Q psy9968           2 QVHATDVDPPS-NGGTIQYRIIKAP---GERAKFSIDKETGIVK-TLYALDRDDPEREKEIYITTDIRVQALDRDDPERE   76 (118)
Q Consensus         2 ~v~A~D~D~~~-~n~~i~y~i~~~~---~~~~~F~id~~tG~i~-~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~   76 (118)
                      +|.|+|+|.+. .|++|+|+|....   ....+|.|++.+|.+. +.+.                      ||||   .+
T Consensus        28 ~v~A~D~D~~~~~n~~i~y~i~~~~~~~~~~~~F~i~~~tG~i~~~~~~----------------------lD~E---~~   82 (114)
T d1ncja2          28 TVTAIDADDPNALNGMLRYRIVSQAPSTPSPNMFTINNETGDIITVAAG----------------------LDRE---KV   82 (114)
T ss_dssp             ECCC-CCSCTTSTTTCCEEEEEEEESCCSCSCCEEECSSSCEEEECSSC----------------------CCTT---TC
T ss_pred             EEEEEECCCCccccceeEEEeccCCcCCCccceEEecCccceEEEeccc----------------------cccc---cC
Confidence            57899999642 5789999998632   2346899999999764 4556                      7887   66


Q ss_pred             ceEEEEEEEEECCCC---CCeeEEEEEEEEEe
Q psy9968          77 KEIYITVIAEDNGTP---QLSDACTMKITVED  105 (118)
Q Consensus        77 ~~~~l~v~a~D~g~p---~~s~~~~v~I~v~D  105 (118)
                      ..|.|.|.|+|.+++   +++++++|.|+|.|
T Consensus        83 ~~y~l~V~A~D~~~~~~~~~ss~~~v~I~V~D  114 (114)
T d1ncja2          83 QQYTLIIQATDMEGNPTYGLSNTATAVITVTD  114 (114)
T ss_dssp             SEEEEEEEEESGGGCBTTBCEEEEEEEEEEC-
T ss_pred             CEEEEEEEEEECCCCCCCCceEEEEEEEEEEC
Confidence            799999999997643   36788888888866

>d1l3wa3 b.1.6.1 (A:214-326) C-cadherin ectodomain {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Cadherin
domain: C-cadherin ectodomain
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.36  E-value=5.6e-13  Score=83.11  Aligned_cols=78  Identities=28%  Similarity=0.441  Sum_probs=59.2

Q ss_pred             EEEEEeCCCCCCC-CcEEEEEEeCCCCCccEEEe----CCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCc
Q psy9968           2 QVHATDVDPPSNG-GTIQYRIIKAPGERAKFSID----KETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPERE   76 (118)
Q Consensus         2 ~v~A~D~D~~~~n-~~i~y~i~~~~~~~~~F~id----~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~   76 (118)
                      +|.|+|+|.+..+ ..+.|.+.  +.....|.|.    ..+|.|++.+.                      ||||   .+
T Consensus        28 ~v~A~D~D~~~~~~~~~~~~~~--~~~~~~f~i~~~~~~~~g~i~~~~~----------------------lD~E---~~   80 (113)
T d1l3wa3          28 RLSVTDLDMPGTPAWQAVYKIR--VNEGGFFNITTDPESNQGILTTAKG----------------------LDFE---LR   80 (113)
T ss_dssp             EECBCCCSCTTSTTSCEECCBS--CCTTSCEEEEECTTTCCEEEEESSC----------------------CCCS---SC
T ss_pred             EEEEEccccCCcceeEEEEeec--cccccceEEEeecCCCceEEEeeee----------------------cccc---cC
Confidence            6889999987422 33444443  3333578874    45688888888                      6887   66


Q ss_pred             ceEEEEEEEEEC---CCCCCeeEEEEEEEEEeC
Q psy9968          77 KEIYITVIAEDN---GTPQLSDACTMKITVEDI  106 (118)
Q Consensus        77 ~~~~l~v~a~D~---g~p~~s~~~~v~I~v~Dv  106 (118)
                      +.|.|.|.|+|.   |.|+++++++|.|+|.||
T Consensus        81 ~~y~l~V~a~D~~~~~~~~~~s~~~V~I~V~DV  113 (113)
T d1l3wa3          81 KQYVLQITVENAEPFSVPLPTSTATVTVTVEDV  113 (113)
T ss_dssp             CCEEEEECCEESSCCSSCCCCCCEEEEEEEECC
T ss_pred             CEEEEEEEEEECCCCCCCceEeEEEEEEEEEeC
Confidence            789999999997   567899999999999997

>d1u2ca1 b.1.6.2 (A:58-160) Dystroglycan, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cadherin-like
family: Dystroglycan, N-terminal domain
domain: Dystroglycan, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.28  Score=28.79  Aligned_cols=47  Identities=21%  Similarity=0.188  Sum_probs=33.4

Q ss_pred             EEEEEEeC--CCCCccEEEeCCCCEEEEeeeecCCCCcccceeeeeeeeecccCCCCCCCCcceEEEEEEEEECCC
Q psy9968          17 IQYRIIKA--PGERAKFSIDKETGIVKTLYALDRDDPEREKEIYITTDIRVQALDRDDPEREKEIYITVIAEDNGT   90 (118)
Q Consensus        17 i~y~i~~~--~~~~~~F~id~~tG~i~~~~~ld~e~~~~~~~~~~~~~~~~~~lDre~~~~~~~~~l~v~a~D~g~   90 (118)
                      +.|++...  .+...+..+|+.+|.+...-.                       ..    ....|.+.|.|+|.++
T Consensus        33 ~t~~~~~~~g~~LPsWl~fd~~tg~~~GtP~-----------------------~~----~~G~~~i~vtAtD~~~   81 (103)
T d1u2ca1          33 EIIKVSAAGKEALPSWLHWDPHSHILEGLPL-----------------------DT----DKGVHYISVSAARLGA   81 (103)
T ss_dssp             EEEEEEETTSSSCCTTEEEETTTTEEEECCC-----------------------GG----GCEEEEEEEEEEEECT
T ss_pred             cEEEEEecCCCCCCccEEEeccCCEEEEccC-----------------------CC----CceEEEEEEEEEeCCC
Confidence            67777642  222469999999999988543                       11    2358999999999765