Domain ID e1ibmE4

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  • A: a+b two layers
  • X: dsRBD-like
  • H: dsRNA-binding domain-like
  • T: dsRNA-binding domain-like
  • F: Ribosomal_S5
UID: 001277328
Type: Automatic domain
Parent: e1pkpA1
Range: E:5-72
PDB: 1ibm
PDB Description: 30S RIBOSOMAL PROTEIN S5
UniProt: Q5SHQ5
Species: Thermus thermophilus

Structure of domain e1ibmE4

Domains in the same chain:

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e1ibmE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1ibmE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like

Domains in the same PDB:

e1ibmB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1ibmC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1ibmC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1ibmD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1ibmE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1ibmE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibmF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1ibmG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1ibmH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1ibmH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1ibmI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibmJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1ibmK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1ibmL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibmM1 M:2-119 HhH/H2TH H2TH H2TH
e1ibmN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1ibmO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1ibmP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1ibmQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibmR1 R:16-88 HTH HTH tri-helical
e1ibmS1 S:2-88 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1ibmT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1ibmE4 of H-group "dsRNA-binding domain-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ibmD1 E:x,y,z->D:X,Y,Z Ubiquitin-related Interaction Interface Pymol
e1ibmE3 E:x,y,z->E:Y,X,-Z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ibmE3 E:Y,X,-Z->E:x,y,z Ribosomal protein S5 domain 2-like Interaction Interface Pymol
e1ibmC1 E:x,y,z->C:X,Y,Z Ribosomal protein S3-C Interaction Interface Pymol