Domain ID e1ibmO1

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  • A: alpha arrays
  • X: S15/NS1 RNA-binding domain
  • H: S15/NS1 RNA-binding domain
  • T: S15/NS1 RNA-binding domain
  • F: Ribosomal_S15
UID: 000437575
Type: Automatic domain
Parent: e3j6vO1
Range: O:2-89
PDB: 1ibm
PDB Description: 30S RIBOSOMAL PROTEIN S15
UniProt: Q5SJ76
Hsap BLAST neighbor: P82914
Species: Thermus thermophilus

Structure of domain e1ibmO1

Domains in the same chain:

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e1ibmO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain

Domains in the same PDB:

e1ibmB1 B:7-127,B:157-240 Flavodoxin-like Ribosomal protein S2/SIS domain Ribosomal protein S2/SIS domain
e1ibmC2 C:2-106 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e1ibmC1 C:107-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e1ibmD1 D:2-209 beta-Grasp Ubiquitin-related Alpha-L RNA-binding motif
e1ibmE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e1ibmE3 E:73-154 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibmF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e1ibmG1 G:2-156 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e1ibmH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e1ibmH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e1ibmI1 I:2-128 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e1ibmJ1 J:3-100 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e1ibmK1 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e1ibmL1 L:5-128 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibmM1 M:2-119 HhH/H2TH H2TH H2TH
e1ibmN1 N:2-61 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e1ibmO1 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e1ibmP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e1ibmQ1 Q:2-105 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e1ibmR1 R:16-88 HTH HTH tri-helical
e1ibmS1 S:2-88 Ribosomal protein S19 Ribosomal protein S19 Ribosomal protein S19
e1ibmT1 T:8-106 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20

Structural contacts of domain e1ibmO1 of H-group "S15/NS1 RNA-binding domain":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1ibmF1 O:x,y,z->F:X,Y,Z Ribosomal protein S6 Interaction Interface Pymol