Domain ID e2dsjA1

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  • A: a/b three-layered sandwiches
  • X: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
  • H: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
  • T: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
  • F: Glycos_transf_3
UID: 000163027
Type: Automatic domain
Parent: e1brwA3
Range: A:71-323
Ligands: CL
PDB: 2dsj
PDB Description: PYRIMIDINE-NUCLEOSIDE (THYMIDINE) PHOSPHORYLASE
UniProt: Q5SHF9
Hsap BLAST neighbor: P19971
Species:

Structure of domain e2dsjA1

Domains in the same chain:

e2dsjA2 A:1-70 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2dsjA1 A:71-323 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2dsjA3 A:324-423 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain

Domains in the same PDB:

e2dsjA2 A:1-70 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2dsjA1 A:71-323 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2dsjA3 A:324-423 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain
e2dsjB1 B:1-70 Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N Nucleoside phosphorylase/phosphoribosyltransferase-N
e2dsjB3 B:71-323 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2dsjB2 B:324-423 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Pyrimidine nucleoside phosphorylase C-terminal domain

Structural contacts of domain e2dsjA1 of H-group "Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2dsjB1 A:X,Y,Z->B:x,y,z Nucleoside phosphorylase/phosphoribosyltransferase-N Interaction Interface Pymol
e2dsjA1 A:x,y,z->A:-X+2,Y-1/2,-Z+1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol
e2dsjA3 A:x,y,z->A:-X+2,Y-1/2,-Z+1 alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2dsjA3 A:-X+2,Y-1/2,-Z+1->A:x,y,z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2dsjA1 A:-X+2,Y-1/2,-Z+1->A:x,y,z Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol
e2dsjA3 A:x,y,z->A:X-1,Y,Z alpha/beta-Hammerhead/Barrel-sandwich hybrid Interaction Interface Pymol
e2dsjB3 A:x,y,z->B:X,Y,Z-1 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Interaction Interface Pymol
e2dsjB1 A:-X+2,Y-1/2,-Z+1->B:x,y,z Nucleoside phosphorylase/phosphoribosyltransferase-N Interaction Interface Pymol