ECOD: domain e2dsjB3

Domain ID e2dsjB3

A: a/b three-layered sandwiches
X: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
H: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
T: Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
F: Glycos_transf_3

UID:	000312459
Type:	Automatic domain
Parent:	e1brwA3
Range:	B:71-323
Ligands:	CL
PDB:	2dsj
PDB Description:	PYRIMIDINE-NUCLEOSIDE (THYMIDINE) PHOSPHORYLASE
UniProt:	Q5SHF9
Hsap BLAST neighbor:	P19971
Species:

Domains in the same chain:

Download Pymol

e2dsjB1	B:1-70	Nucleoside phosphorylase/phosphoribosyltransferase-N	Nucleoside phosphorylase/phosphoribosyltransferase-N	Nucleoside phosphorylase/phosphoribosyltransferase-N
e2dsjB3	B:71-323	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2dsjB2	B:324-423	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Pyrimidine nucleoside phosphorylase C-terminal domain

Domains in the same PDB:

e2dsjA2	A:1-70	Nucleoside phosphorylase/phosphoribosyltransferase-N	Nucleoside phosphorylase/phosphoribosyltransferase-N	Nucleoside phosphorylase/phosphoribosyltransferase-N
e2dsjA1	A:71-323	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2dsjA3	A:324-423	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Pyrimidine nucleoside phosphorylase C-terminal domain
e2dsjB1	B:1-70	Nucleoside phosphorylase/phosphoribosyltransferase-N	Nucleoside phosphorylase/phosphoribosyltransferase-N	Nucleoside phosphorylase/phosphoribosyltransferase-N
e2dsjB3	B:71-323	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
e2dsjB2	B:324-423	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Pyrimidine nucleoside phosphorylase C-terminal domain

Structural contacts of domain e2dsjB3 of H-group "Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2dsjB3	B:x,y,z->B:-X+1,Y-1/2,-Z+2	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Interaction Interface Pymol
e2dsjB2	B:x,y,z->B:-X+1,Y-1/2,-Z+2	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e2dsjB2	B:-X+1,Y-1/2,-Z+2->B:x,y,z	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Interaction Interface Pymol
e2dsjB3	B:-X+1,Y-1/2,-Z+2->B:x,y,z	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Interaction Interface Pymol
e2dsjA2	B:x,y,z->A:X,Y,Z	Nucleoside phosphorylase/phosphoribosyltransferase-N	Interaction Interface Pymol
e2dsjA1	B:X,Y,Z-1->A:x,y,z	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Interaction Interface Pymol