ECOD: domain e2q2eA1

Domain ID e2q2eA1

A: a/b three-layered sandwiches
X: HAD domain-like
H: HAD domain-related
T: Toprim domain
F: TOP6A-Spo11_Toprim

UID:	001394770
Type:	Automatic domain
Parent:	e2zbkA3
Range:	A:193-367
PDB:	2q2e
PDB Description:	Type II DNA topoisomerase VI subunit A
UniProt:	Q8PUB7
Hsap BLAST neighbor:	Q9Y5K1
Species:	Methanosarcina mazei

Domain
In chain context
In PDB context

Structure of domain e2q2eA1

Domains in the same chain:

Download Pymol

e2q2eA3	A:15-43,A:68-145	HTH	HTH domain in DNA topoisomerase IV alpha subunit	HTH domain in DNA topoisomerase IV alpha subunit
e2q2eA2	A:145-192	all-beta domain in DNA topoisomerase IV alpha subunit	all-beta domain in DNA topoisomerase IV alpha subunit	all-beta domain in DNA topoisomerase IV alpha subunit
e2q2eA1	A:193-367	HAD domain-like	HAD domain-related	Toprim domain

Domains in the same PDB:

e2q2eA3	A:15-43,A:68-145	HTH	HTH domain in DNA topoisomerase IV alpha subunit	HTH domain in DNA topoisomerase IV alpha subunit
e2q2eA2	A:145-192	all-beta domain in DNA topoisomerase IV alpha subunit	all-beta domain in DNA topoisomerase IV alpha subunit	all-beta domain in DNA topoisomerase IV alpha subunit
e2q2eA1	A:193-367	HAD domain-like	HAD domain-related	Toprim domain
e2q2eB1	B:11-233	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
e2q2eB2	B:234-309	HhH/H2TH	H2TH	H2TH
e2q2eB3	B:310-493	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like	Ribosomal protein S5 domain 2-like
e2q2eB4	B:494-613	Immunoglobulin-like beta-sandwich	Immunoglobulin-related	Immunoglobulin/Fibronectin type III/E set domains/PapD-like

Structural contacts of domain e2q2eA1 of H-group "HAD domain-related":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e2q2eA3	A:x,y,z->A:-Y+1,-X+1,-Z+4/3	HTH domain in DNA topoisomerase IV alpha subunit	Interaction Interface Pymol
e2q2eA2	A:x,y,z->A:-Y+1,-X+1,-Z+4/3	all-beta domain in DNA topoisomerase IV alpha subunit	Interaction Interface Pymol
e2q2eA1	A:x,y,z->A:-Y+1,-X+1,-Z+4/3	HAD domain-related	Interaction Interface Pymol
e2q2eA2	A:-Y+1,-X+1,-Z+4/3->A:x,y,z	all-beta domain in DNA topoisomerase IV alpha subunit	Interaction Interface Pymol
e2q2eA1	A:-Y+1,-X+1,-Z+4/3->A:x,y,z	HAD domain-related	Interaction Interface Pymol
e2q2eA3	A:-Y+1,-X+1,-Z+4/3->A:x,y,z	HTH domain in DNA topoisomerase IV alpha subunit	Interaction Interface Pymol