Domain ID e2waqB2

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  • A: beta barrels
  • X: cradle loop barrel
  • H: RIFT-related
  • T: double psi
  • F: RNA_pol_Rpb2_6
UID: 001669340
Type: Automatic domain
Parent: e4by7B5
Range: B:716-752,B:876-998
Ligands: ZN
PDB: 2waq
PDB Description: DNA-DIRECTED RNA POLYMERASE RPO2 SUBUNIT
UniProt: B8YB55
Hsap BLAST neighbor: P30876
Species: Sulfolobus shibatae

Structure of domain e2waqB2

Domains in the same chain:

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e2waqB3 B:8-170,B:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2waqB7 B:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2waqB6 B:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2waqB1 B:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2waqB2 B:716-752,B:876-998 cradle loop barrel RIFT-related double psi
e2waqB5 B:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2waqB4 B:999-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase

Domains in the same PDB:

e2waqA4 A:4-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e2waqA1 A:307-494 cradle loop barrel RIFT-related double psi
e2waqA2 A:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e2waqA3 A:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e2waqB3 B:8-170,B:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2waqB7 B:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e2waqB6 B:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e2waqB1 B:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e2waqB2 B:716-752,B:876-998 cradle loop barrel RIFT-related double psi
e2waqB5 B:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e2waqB4 B:999-1122 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e2waqC1 C:11-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e2waqC2 C:66-115,C:276-394 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e2waqC3 C:116-147,C:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2waqC4 C:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e2waqD1 D:2-36,D:159-264 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2waqD2 D:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e2waqE2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e2waqE1 E:79-177 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2waqF1 F:3-92 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e2waqG1 G:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e2waqH1 H:9-82 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e2waqK1 K:9-94 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e2waqL1 L:1-91 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e2waqN1 N:1-64 HTH RPB10 RPB10
e2waqP1 P:3-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e2waqQ1 Q:38-82 YqgQ-like YqgQ-like YqgQ-like

Structural contacts of domain e2waqB2 of H-group "RIFT-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e2waqA1 B:x,y,z->A:X,Y,Z RIFT-related Interaction Interface Pymol
e2waqA2 B:x,y,z->A:X,Y,Z first helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2waqA3 B:x,y,z->A:X,Y,Z second helical domain in RNA-polymerase beta-prime subunit Interaction Interface Pymol
e2waqD1 B:X,Y,Z->D:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol
e2waqD2 B:X,Y,Z->D:x,y,z Insert subdomain of RNA polymerase alpha subunit Interaction Interface Pymol
e2waqL1 B:X,Y,Z->L:x,y,z RBP11-like subunits of RNA polymerase Interaction Interface Pymol