ECOD: domain e4aybD1

Domain ID e4aybD1

A: a+b two layers
X: DCoH-like
H: RBP11-like subunits of RNA polymerase
T: RBP11-like subunits of RNA polymerase
F: RNA_pol_L

UID:	001592910
Type:	Automatic domain
Parent:	e4c2mC1
Range:	D:2-36,D:159-263
Ligands:	SF4
PDB:	4ayb
PDB Description:	DNA-DIRECTED RNA POLYMERASE
UniProt:	B8YB56
Species:	Sulfolobus shibatae

Domains in the same chain:

Download Pymol

e4aybD1	D:2-36,D:159-263	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4aybD2	D:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit

Domains in the same PDB:

Structural contacts of domain e4aybD1 of H-group "RBP11-like subunits of RNA polymerase":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4aybL1	D:X,Y,Z->L:x,y,z	RBP11-like subunits of RNA polymerase	Interaction Interface Pymol
e4aybB5	D:x,y,z->B:X,Y,Z	RIFT-related	Interaction Interface Pymol
e4aybA1	D:X,Y,Z-1->A:x,y,z	N-terminal domain in RNA-polymerase beta-prime subunit	Interaction Interface Pymol

e4aybA1	A:3-306	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e4aybA3	A:307-494	cradle loop barrel	RIFT-related	double psi
e4aybA4	A:495-644	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e4aybA2	A:645-879	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e4aybB3	B:7-170,B:345-475	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4aybB7	B:171-344	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e4aybB6	B:476-575	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e4aybB2	B:576-715	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e4aybB5	B:716-752,B:876-998	cradle loop barrel	RIFT-related	double psi
e4aybB4	B:753-875	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e4aybB1	B:999-1125	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4aybC4	C:6-65	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e4aybC1	C:66-115,C:276-394	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e4aybC3	C:116-147,C:233-275	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4aybC2	C:148-232	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4aybD1	D:2-36,D:159-263	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4aybD2	D:37-158	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e4aybE2	E:1-78	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e4aybE1	E:79-178	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4aybF1	F:3-110	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e4aybG1	G:5-117	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e4aybH1	H:8-83	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e4aybK2	K:11-94	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e4aybL1	L:1-91	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e4aybN1	N:1-65	HTH	RPB10	RPB10
e4aybP2	P:5-48	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e4aybQ1	Q:33-82	YqgQ-like	YqgQ-like	YqgQ-like