Domain ID e4aybP2

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  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Unmapped domains
UID: 001247584
Type: Automatic domain
Parent: e1twfL1
Range: P:5-48
Ligands: ZN
PDB: 4ayb
PDB Description: DNA-DIRECTED RNA POLYMERASE
UniProt: B8YB64
Species: Sulfolobus shibatae

Structure of domain e4aybP2

Domains in the same chain:

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e4aybP2 P:5-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related

Domains in the same PDB:

e4aybA1 A:3-306 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e4aybA3 A:307-494 cradle loop barrel RIFT-related double psi
e4aybA4 A:495-644 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e4aybA2 A:645-879 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e4aybB3 B:7-170,B:345-475 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4aybB7 B:171-344 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e4aybB6 B:476-575 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e4aybB2 B:576-715 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e4aybB5 B:716-752,B:876-998 cradle loop barrel RIFT-related double psi
e4aybB4 B:753-875 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e4aybB1 B:999-1125 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e4aybC4 C:6-65 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e4aybC1 C:66-115,C:276-394 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e4aybC3 C:116-147,C:233-275 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4aybC2 C:148-232 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e4aybD1 D:2-36,D:159-263 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4aybD2 D:37-158 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e4aybE2 E:1-78 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e4aybE1 E:79-178 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4aybF1 F:3-110 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e4aybG1 G:5-117 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4aybH1 H:8-83 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e4aybK2 K:11-94 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e4aybL1 L:1-91 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e4aybN1 N:1-65 HTH RPB10 RPB10
e4aybP2 P:5-48 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e4aybQ1 Q:33-82 YqgQ-like YqgQ-like YqgQ-like