Domain ID e4b8hK2

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  • A: mixed a+b and a/b
  • X: Ribonuclease H-like
  • H: Ribonuclease H-like
  • T: Ribonuclease H-like
  • F: Ribosomal_S11
UID: 001149858
Type: Automatic domain
Parent: e2uubK1
Range: K:11-129
PDB: 4b8h
PDB Description:
Hsap BLAST neighbor: P82912
Species:

Structure of domain e4b8hK2

Domains in the same chain:

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e4b8hK2 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like

Domains in the same PDB:

e4b8hC2 C:1-105 Alpha-lytic protease prodomain-like KH-domains Prokaryotic type KH domain (KH-domain type II)
e4b8hC1 C:106-207 T-fold Ribosomal protein S3-C Ribosomal protein S3-C
e4b8hE4 E:5-72 dsRBD-like dsRNA-binding domain-like dsRNA-binding domain-like
e4b8hE3 E:73-155 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b8hF1 F:1-101 Alpha-beta plaits Ribosomal protein S6 Ribosomal protein S6
e4b8hG1 G:1-154 Ribosomal protein S7 Ribosomal protein S7 Ribosomal protein S7
e4b8hH1 H:1-66 R3H domain-like Ribosomal protein S8, N-terminal domain Ribosomal protein S8, N-terminal domain
e4b8hH2 H:67-138 Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain Ribosomal protein S8, C-terminal domain
e4b8hJ1 J:1-96 Alpha-beta plaits Ribosomal protein S10 Ribosomal protein S10
e4b8hK2 K:11-129 Ribonuclease H-like Ribonuclease H-like Ribonuclease H-like
e4b8hL1 L:4-124 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e4b8hN1 N:1-59 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4b8hO2 O:2-89 S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain S15/NS1 RNA-binding domain
e4b8hP1 P:1-83 Ribosomal protein S16 Ribosomal protein S16 Ribosomal protein S16
e4b8hR2 R:19-88 HTH HTH tri-helical
e4b8hT1 T:1-92 Spectrin repeat-like Ribosomal protein S20 Ribosomal protein S20
e4b8hY24 Y:4-38,Y:67-284 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4b8hY22 Y:285-401 cradle loop barrel RIFT-related Alanine racemase-C
e4b8hY23 Y:402-475 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like
e4b8hY25 Y:476-585 Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like
e4b8hY21 Y:586-690 Alpha-beta plaits EF-G C-terminal domain-like EF-G C-terminal domain-like

Structural contacts of domain e4b8hK2 of H-group "Ribonuclease H-like":

The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e4b8hR2 K:X,Y,Z->R:x,y,z HTH Interaction Interface Pymol
e4b8hG1 K:x,y,z->G:X,Y,Z Ribosomal protein S7 Interaction Interface Pymol
e4b8hC2 K:-X+1,Y-1/2,-Z+1->C:x,y,z KH-domains Interaction Interface Pymol