ECOD: domain e4ddvA3

Domain ID e4ddvA3

A: a/b three-layered sandwiches
X: HAD domain-like
H: HAD domain-related
T: Toprim domain
F: Toprim

UID:	001648892
Type:	Automatic domain
Parent:	e1gl9C3
Range:	A:537-713
Ligands:	ZN
PDB:	4ddv
PDB Description:	Reverse gyrase
UniProt:	O51934
Species:	Thermotoga maritima

Domains in the same chain:

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e4ddvA7	A:2-54	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ddvA8	A:55-285	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddvA2	A:282-536	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddvA3	A:537-713	HAD domain-like	HAD domain-related	Toprim domain
e4ddvA5	A:714-773,A:1007-1103	HTH	HTH	winged
e4ddvA6	A:773-813,A:939-1006	LigT-like	Prokaryotic type I DNA topoisomerase beta-barrel domain	Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddvA4	A:813-938	HTH	HTH	winged

Domains in the same PDB:

e4ddvA7	A:2-54	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ddvA8	A:55-285	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddvA2	A:282-536	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddvA3	A:537-713	HAD domain-like	HAD domain-related	Toprim domain
e4ddvA5	A:714-773,A:1007-1103	HTH	HTH	winged
e4ddvA6	A:773-813,A:939-1006	LigT-like	Prokaryotic type I DNA topoisomerase beta-barrel domain	Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddvA4	A:813-938	HTH	HTH	winged
e4ddvB8	B:2-54	Glucocorticoid receptor-like	LIM domain-like	LIM domain-like
e4ddvB7	B:55-285	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddvB2	B:284-536	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e4ddvB3	B:537-713	HAD domain-like	HAD domain-related	Toprim domain
e4ddvB5	B:714-773,B:1007-1103	HTH	HTH	winged
e4ddvB6	B:773-813,B:939-1006	LigT-like	Prokaryotic type I DNA topoisomerase beta-barrel domain	Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddvB4	B:813-938	HTH	HTH	winged

Structural contacts of domain e4ddvA3 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain ID	Symmetry operator	H-group	Visualization
e4ddvB6	A:X,Y-1,Z->B:x,y,z	Prokaryotic type I DNA topoisomerase beta-barrel domain	Interaction Interface Pymol