Domain ID e4ddvB3

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  • A: a/b three-layered sandwiches
  • X: HAD domain-like
  • H: HAD domain-related
  • T: Toprim domain
  • F: Toprim
UID: 001648886
Type: Automatic domain
Parent: e1gl9C3
Range: B:537-713
Ligands: ZN
PDB: 4ddv
PDB Description: Reverse gyrase
UniProt: O51934
Species: Thermotoga maritima

Structure of domain e4ddvB3

Domains in the same chain:

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e4ddvB8 B:2-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ddvB7 B:55-285 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddvB2 B:284-536 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddvB3 B:537-713 HAD domain-like HAD domain-related Toprim domain
e4ddvB5 B:714-773,B:1007-1103 HTH HTH winged
e4ddvB6 B:773-813,B:939-1006 LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddvB4 B:813-938 HTH HTH winged

Domains in the same PDB:

e4ddvA7 A:2-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ddvA8 A:55-285 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddvA2 A:282-536 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddvA3 A:537-713 HAD domain-like HAD domain-related Toprim domain
e4ddvA5 A:714-773,A:1007-1103 HTH HTH winged
e4ddvA6 A:773-813,A:939-1006 LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddvA4 A:813-938 HTH HTH winged
e4ddvB8 B:2-54 Glucocorticoid receptor-like LIM domain-like LIM domain-like
e4ddvB7 B:55-285 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddvB2 B:284-536 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e4ddvB3 B:537-713 HAD domain-like HAD domain-related Toprim domain
e4ddvB5 B:714-773,B:1007-1103 HTH HTH winged
e4ddvB6 B:773-813,B:939-1006 LigT-like Prokaryotic type I DNA topoisomerase beta-barrel domain Prokaryotic type I DNA topoisomerase beta-barrel domain
e4ddvB4 B:813-938 HTH HTH winged

Structural contacts of domain e4ddvB3 of H-group "HAD domain-related":

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The domain and its neighboring domains (both within the asymmetric unit and to crystallographic symmetry mates) are represented by spheres and linked by lines. Distances between the center of the domain and interfaces are shown for each contact.

Domain IDSymmetry operatorH-groupVisualization
e1gl9C3 B:x,y,z->A:X,Y,Z HAD domain-related Interaction Interface Pymol
e4ddvA6 B:x,y,z->A:X,Y-1,Z-1 Prokaryotic type I DNA topoisomerase beta-barrel domain Interaction Interface Pymol