ECOD: domain e6gym32

Domain ID e6gym32

A: few secondary structure elements
X: beta-beta-alpha zinc fingers
H: beta-beta-alpha zinc fingers
T: beta-beta-alpha zinc fingers
F: MAT1

UID:	002426716
Type:	Automatic domain
Parent:	e5oqj32
Range:	3:80-145
PDB:	6gym
PDB Description:	RNA polymerase II transcription factor B subunit 3
UniProt:	Q03290
Hsap BLAST neighbor:	P51948
Species:

Domains in the same chain:

Download Pymol

e6gym31	3:8-79	RING/U-box-like	RING/U-box-like	RING/U-box
e6gym32	3:80-145	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers

Domains in the same PDB:

e6gym03	0:503-723	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6gym31	3:8-79	RING/U-box-like	RING/U-box-like	RING/U-box
e6gym32	3:80-145	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers	beta-beta-alpha zinc fingers
e6gym42	4:22-285	HAD domain-like	HAD domain-related	vWA-like
e6gym41	4:286-323	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gym51	5:2-67	TFB5-related	TFB5-related	TFB5-related
e6gym63	6:123-307	HAD domain-like	HAD domain-related	vWA-like
e6gym61	6:308-374	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gym62	6:375-457	RING/U-box-like	RING/U-box-like	Cysteine-rich domain
e6gym73	7:363-545	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6gym71	7:546-722	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6gym72	7:723-770	P-loop domains-like	P-loop domains-related	P-loop containing nucleoside triphosphate hydrolases
e6gymA7	A:3-336	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit	N-terminal domain in RNA-polymerase beta-prime subunit
e6gymA9	A:337-374,A:436-519	cradle loop barrel	RIFT-related	double psi
e6gymA6	A:375-435	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gymA3	A:520-662	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit	first helical domain in RNA-polymerase beta-prime subunit
e6gymA5	A:663-871	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit	second helical domain in RNA-polymerase beta-prime subunit
e6gymA8	A:872-1059	helical domain in yeast RNA-polymerases	third helical domain in yeast RNA-polymerase II beta-prime subunit	third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gymA2	A:1060-1112,A:1331-1452	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit	central helical domain in RNA-polymerase beta-prime subunit
e6gymA4	A:1113-1141,A:1273-1330	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymA1	A:1142-1272	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit	permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymB7	B:20-218,B:405-541	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase	N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gymB2	B:219-404	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase	insertion domain in beta subunit of DNA dependent RNA-polymerase
e6gymB3	B:542-630	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit	inserted a+b domain in yeast RNA polymerase beta subunit
e6gymB4	B:631-813	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase	barrel domain in beta subunit of DNA dependent RNA-polymerase
e6gymB5	B:814-850,B:975-1097	cradle loop barrel	RIFT-related	double psi
e6gymB6	B:851-974	alpha/beta-Hammerhead/Barrel-sandwich hybrid	alpha/beta-Hammerhead/Barrel-sandwich hybrid	Single hybrid motif
e6gymB1	B:1098-1223	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase	C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gymC1	C:4-41,C:173-265	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6gymC2	C:42-172	Ribosomal protein TL5/L25 C-terminal domain-like	Insert subdomain of RNA polymerase alpha subunit	Insert subdomain of RNA polymerase alpha subunit
e6gymD1	D:24-71,D:131-221	HhH/H2TH	SAM/DNA-glycosylase	SAM domain-like
e6gymE2	E:3-143	Restriction endonuclease-like	Eukaryotic RPB5 N-terminal domain	Eukaryotic RPB5 N-terminal domain
e6gymE1	E:144-215	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit	RPB5-like RNA polymerase subunit
e6gymF1	F:72-154	RPB6/omega subunit-like	RPB6/omega subunit-like	RPB6
e6gymG1	G:1-68	Dodecin subunit-like	Flavin-binding protein dodecin-like	Flavin-binding protein dodecin-like
e6gymG2	G:69-171	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6gymH1	H:2-146	OB-fold	Nucleic acid-binding proteins	Nucleic acid-binding proteins
e6gymI2	I:2-49	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gymI1	I:50-117	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gymJ1	J:1-65	HTH	RPB10	RPB10
e6gymK1	K:1-112	DCoH-like	RBP11-like subunits of RNA polymerase	RBP11-like subunits of RNA polymerase
e6gymL1	L:26-70	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gymM3	M:16-68	Rubredoxin-like	Rubredoxin-related	Rubredoxin-related
e6gymM2	M:67-218	HTH	HTH	Cyclin-like
e6gymM1	M:233-326	HTH	HTH	Cyclin-like
e6gymO1	O:61-156	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e6gymO2	O:157-240	TBP-like	TATA-box binding protein-like	TATA-box binding protein-like
e6gymQ1	Q:21-35,Q:97-142,Q:327-415	triple barrel	triple barrel	Rap30/74 interaction domains-like
e6gymR2	R:58-138,R:207-227	triple barrel	triple barrel	Rap30/74 interaction domains-like
e6gymR1	R:291-351	HTH	HTH	winged
e6gymU1	U:2-47	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e6gymU2	U:241-286	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e6gymV2	V:5-54	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain	TFIIA, alpha-helical domain
e6gymV1	V:55-119	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain	Transcription factor IIA (TFIIA), beta-barrel domain
e6gymX3	X:123-188	HTH	HTH	winged
e6gymX2	X:189-249	HTH	HTH	winged
e6gymX1	X:250-283	HTH	HTH	winged