Domain ID e6gym61

Download files:
  • A: few secondary structure elements
  • X: Rubredoxin-like
  • H: Rubredoxin-related
  • T: Rubredoxin-related
  • F: Unmapped domains
UID: 002426720
Type: Automatic domain
Parent: e5oqj63
Range: 6:308-374
Ligands: ZN
PDB: 6gym
PDB Description: General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1,General transcription and DNA repair factor IIH subunit SSL1
UniProt: Q04673
Species:

Structure of domain e6gym61

Domains in the same chain:

Download Pymol

e6gym63 6:123-307 HAD domain-like HAD domain-related vWA-like
e6gym61 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gym62 6:375-457 RING/U-box-like RING/U-box-like Cysteine-rich domain

Domains in the same PDB:

e6gym03 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gym31 3:8-79 RING/U-box-like RING/U-box-like RING/U-box
e6gym32 3:80-145 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e6gym42 4:22-285 HAD domain-like HAD domain-related vWA-like
e6gym41 4:286-323 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gym51 5:2-67 TFB5-related TFB5-related TFB5-related
e6gym63 6:123-307 HAD domain-like HAD domain-related vWA-like
e6gym61 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gym62 6:375-457 RING/U-box-like RING/U-box-like Cysteine-rich domain
e6gym73 7:363-545 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gym71 7:546-722 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gym72 7:723-770 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gymA7 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6gymA9 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e6gymA6 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gymA3 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6gymA5 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6gymA8 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gymA2 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6gymA4 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymA1 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymB7 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gymB2 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6gymB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6gymB4 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6gymB5 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e6gymB6 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6gymB1 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gymC1 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gymC2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6gymD1 D:24-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6gymE2 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6gymE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6gymF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6gymG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6gymG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gymH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gymI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymJ1 J:1-65 HTH RPB10 RPB10
e6gymK1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gymL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymM3 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymM2 M:67-218 HTH HTH Cyclin-like
e6gymM1 M:233-326 HTH HTH Cyclin-like
e6gymO1 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e6gymO2 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e6gymQ1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e6gymR2 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e6gymR1 R:291-351 HTH HTH winged
e6gymU1 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e6gymU2 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e6gymV2 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e6gymV1 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e6gymX3 X:123-188 HTH HTH winged
e6gymX2 X:189-249 HTH HTH winged
e6gymX1 X:250-283 HTH HTH winged