Domain ID e6gymA3

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  • A: a+b complex topology
  • X: first helical domain in RNA-polymerase beta-prime subunit
  • H: first helical domain in RNA-polymerase beta-prime subunit
  • T: first helical domain in RNA-polymerase beta-prime subunit
  • F: RNA_pol_Rpb1_3
UID: 002428038
Type: Automatic domain
Parent: e1twfA6
Range: A:520-662
PDB: 6gym
PDB Description: DNA-directed RNA polymerase II subunit RPB1
UniProt: P04050
Hsap BLAST neighbor: P24928
Species:

Structure of domain e6gymA3

Domains in the same chain:

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e6gymA7 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6gymA9 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e6gymA6 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gymA3 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6gymA5 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6gymA8 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gymA2 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6gymA4 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymA1 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit

Domains in the same PDB:

e6gym03 0:503-723 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gym31 3:8-79 RING/U-box-like RING/U-box-like RING/U-box
e6gym32 3:80-145 beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers beta-beta-alpha zinc fingers
e6gym42 4:22-285 HAD domain-like HAD domain-related vWA-like
e6gym41 4:286-323 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gym51 5:2-67 TFB5-related TFB5-related TFB5-related
e6gym63 6:123-307 HAD domain-like HAD domain-related vWA-like
e6gym61 6:308-374 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gym62 6:375-457 RING/U-box-like RING/U-box-like Cysteine-rich domain
e6gym73 7:363-545 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gym71 7:546-722 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gym72 7:723-770 P-loop domains-like P-loop domains-related P-loop containing nucleoside triphosphate hydrolases
e6gymA7 A:3-336 N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit N-terminal domain in RNA-polymerase beta-prime subunit
e6gymA9 A:337-374,A:436-519 cradle loop barrel RIFT-related double psi
e6gymA6 A:375-435 MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase
e6gymA3 A:520-662 first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit first helical domain in RNA-polymerase beta-prime subunit
e6gymA5 A:663-871 second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit second helical domain in RNA-polymerase beta-prime subunit
e6gymA8 A:872-1059 helical domain in yeast RNA-polymerases third helical domain in yeast RNA-polymerase II beta-prime subunit third helical domain in yeast RNA-polymerase II beta-prime subunit
e6gymA2 A:1060-1112,A:1331-1452 central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit central helical domain in RNA-polymerase beta-prime subunit
e6gymA4 A:1113-1141,A:1273-1330 ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymA1 A:1142-1272 permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit
e6gymB7 B:20-218,B:405-541 N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase N-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gymB2 B:219-404 insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase insertion domain in beta subunit of DNA dependent RNA-polymerase
e6gymB3 B:542-630 inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit inserted a+b domain in yeast RNA polymerase beta subunit
e6gymB4 B:631-813 barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase barrel domain in beta subunit of DNA dependent RNA-polymerase
e6gymB5 B:814-850,B:975-1097 cradle loop barrel RIFT-related double psi
e6gymB6 B:851-974 alpha/beta-Hammerhead/Barrel-sandwich hybrid alpha/beta-Hammerhead/Barrel-sandwich hybrid Single hybrid motif
e6gymB1 B:1098-1223 C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase C-terminal domain in beta subunit of DNA dependent RNA-polymerase
e6gymC1 C:4-41,C:173-265 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gymC2 C:42-172 Ribosomal protein TL5/L25 C-terminal domain-like Insert subdomain of RNA polymerase alpha subunit Insert subdomain of RNA polymerase alpha subunit
e6gymD1 D:24-71,D:131-221 HhH/H2TH SAM/DNA-glycosylase SAM domain-like
e6gymE2 E:3-143 Restriction endonuclease-like Eukaryotic RPB5 N-terminal domain Eukaryotic RPB5 N-terminal domain
e6gymE1 E:144-215 RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit RPB5-like RNA polymerase subunit
e6gymF1 F:72-154 RPB6/omega subunit-like RPB6/omega subunit-like RPB6
e6gymG1 G:1-68 Dodecin subunit-like Flavin-binding protein dodecin-like Flavin-binding protein dodecin-like
e6gymG2 G:69-171 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gymH1 H:2-146 OB-fold Nucleic acid-binding proteins Nucleic acid-binding proteins
e6gymI2 I:2-49 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymI1 I:50-117 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymJ1 J:1-65 HTH RPB10 RPB10
e6gymK1 K:1-112 DCoH-like RBP11-like subunits of RNA polymerase RBP11-like subunits of RNA polymerase
e6gymL1 L:26-70 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymM3 M:16-68 Rubredoxin-like Rubredoxin-related Rubredoxin-related
e6gymM2 M:67-218 HTH HTH Cyclin-like
e6gymM1 M:233-326 HTH HTH Cyclin-like
e6gymO1 O:61-156 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e6gymO2 O:157-240 TBP-like TATA-box binding protein-like TATA-box binding protein-like
e6gymQ1 Q:21-35,Q:97-142,Q:327-415 triple barrel triple barrel Rap30/74 interaction domains-like
e6gymR2 R:58-138,R:207-227 triple barrel triple barrel Rap30/74 interaction domains-like
e6gymR1 R:291-351 HTH HTH winged
e6gymU1 U:2-47 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e6gymU2 U:241-286 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e6gymV2 V:5-54 TFIIA, alpha-helical domain TFIIA, alpha-helical domain TFIIA, alpha-helical domain
e6gymV1 V:55-119 Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain Transcription factor IIA (TFIIA), beta-barrel domain
e6gymX3 X:123-188 HTH HTH winged
e6gymX2 X:189-249 HTH HTH winged
e6gymX1 X:250-283 HTH HTH winged