[GoTo Human/Server Evaluation]

CASP8 Server only Evaluation

Chain: FM Best-Score scores

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WARNING: these tables are generated automatically and do not represent the final word in CASP8 assessment. For other automatic evaluations see Baker, Cheng, McGuffin, Zhang.

questions, comments, suggestions: shuoyong.shi@utsouthwestern.edu

get the list of target PDB codes; get target category assignment and domain definitions; get all evaluation tables in a text file
get renumbered and edited to match target sequences PDB coordinates; learn about 'random predictions'
read about NMR structures we processed, target categories we defined and scores we used; see the discussion of whole chain vs. domain evaluation

Target Categories in CASP8 First Score from First model only
CM_easy: Top 10 First-GTD_TS avg ≥ 81 Best Score from Best scoring model (up to 5)
CM_medium: Top 10 First-GDT_TS avg ≥ 67 Z-score Z-score computed on the target scores
CM_hard: Top 10 First-GDT_TS avg ≥ 52 TS GDT_TS score by LGA 1)
FR: Top 10 First-GDT_TS avg ≥ 30 TR GDT_TS score by LGA 1) minus penalty
FM: Top 10 First-GDT_TS avg < 30 CS Contact score based on intramolecular distances
All Targets: Everything combined SUM The sum of scores for all models

1) Zemla A. (2003) "LGA: A method for finding 3D similarities in protein structures." Nucleic Acids Research, 31(13):3370-3374; PMID: 12824330

CM_easy: [First-score] [First-Z score] [Best-score] [Best-Z score]
CM_medium: [First-score] [First-Z score] [Best-score] [Best-Z score]
CM_hard: [First-score] [First-Z score] [Best-score] [Best-Z score]
FR: [First-score] [First-Z score] [Best-score] [Best-Z score]
FM: [First-score] [First-Z score] [Best-score] [Best-Z score]   [GoTo Evaluation on domains]
All Targets: [First-score] [First-Z score] [Best-score] [Best-Z score]

7 chains: text file [GoTo Human/Server Evaluation]

# GROUP ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ TS ↓ TR ↓ CS ↓ ↓ GROUP #
SUM T0405 T0419 T0443 T0465 T0478 T0496 T0504 SUM
alig targ
alig targ
alig targ
alig targ
alig targ
alig targ
alig targ
1 Zhang‑Server 168.45 141.92 308.43 15.48 11.00 36.18 25.05 21.10 48.12 20.88 18.92 38.22 29.75 24.38 45.21 28.41 23.74 44.27 24.00 20.71 41.08 24.88 22.07 55.35 168.45 141.92 308.43 Zhang‑Server 1
2 FALCON 166.84 143.91 296.57 17.35 14.21 34.75 25.16 21.91 41.07 20.50 17.75 39.54 31.20 24.73 46.74 24.91 21.02 33.63 22.00 20.05 41.43 25.72 24.24 59.41 166.84 143.91 296.57 FALCON 2
3 FALCON_CONSENSUS 164.46 139.61 291.95 17.35 14.21 34.75 24.52 21.28 41.07 20.00 15.46 39.54 29.96 24.73 46.74 24.91 21.02 33.63 22.00 18.67 36.81 25.72 24.24 59.41 164.46 139.61 291.95 FALCON_CONSENSUS 3
4 pro‑sp3‑TASSER 158.65 133.52 265.65 15.57 12.60 29.98 27.79 23.61 50.14 19.62 16.79 38.90 24.38 20.80 42.02 28.41 19.25 34.21 21.00 20.52 34.82 21.88 19.95 35.58 158.65 133.52 265.65 pro‑sp3‑TASSER 4
5 BAKER‑ROBETTA 157.28 132.91 277.38 17.53 14.18 36.60 21.08 17.22 42.20 22.88 21.46 42.13 31.20 23.35 44.13 17.23 16.04 28.28 27.29 22.91 41.23 20.07 17.75 42.81 157.28 132.91 277.38 BAKER‑ROBETTA 5
6 Pcons_dot_net 156.90 129.81 174.17 17.53 14.18 36.60 18.99 15.40 -11.44 15.75 14.12 27.36 31.20 23.00 44.13 23.30 19.13 8.17 27.29 22.91 41.23 22.84 21.07 28.12 156.90 129.81 174.17 Pcons_dot_net 6
7 PSI 155.49 136.81 281.61 18.33 16.31 34.75 20.71 18.78 42.46 24.62 19.58 39.77 23.76 19.49 42.92 18.94 16.45 30.54 22.57 20.52 42.34 26.56 25.68 48.83 155.49 136.81 281.61 PSI 7
8 SAM‑T08‑server 149.79 126.14 254.33 14.15 12.40 26.40 10.62 8.26 21.78 21.75 17.29 37.50 24.17 21.01 40.68 20.17 14.11 33.29 29.00 28.71 34.36 29.93 24.36 60.32 149.79 126.14 254.33 SAM‑T08‑server 8
9 RAPTOR 145.34 119.18 270.29 14.86 12.25 32.33 22.75 15.29 30.14 18.38 13.58 39.57 22.73 20.52 43.47 18.56 15.85 32.66 24.14 20.14 41.38 23.92 21.55 50.74 145.34 119.18 270.29 RAPTOR 9
10 MULTICOM‑REFINE 144.39 123.16 229.87 10.94 10.59 22.58 22.69 19.37 34.67 19.38 17.38 28.28 24.17 19.56 40.62 17.61 14.71 21.85 24.00 16.95 29.24 25.60 24.60 52.63 144.39 123.16 229.87 MULTICOM‑REFINE 10
11 MUProt 143.91 124.25 229.04 11.39 10.59 22.58 20.12 17.97 33.94 19.75 16.50 28.28 24.17 19.97 40.62 17.80 15.91 21.85 24.00 16.95 29.24 26.68 26.36 52.53 143.91 124.25 229.04 MUProt 11
12 MULTICOM‑CLUSTER 143.07 129.30 225.09 11.65 10.23 17.72 20.12 18.03 33.83 19.62 17.46 27.06 24.59 20.73 43.31 17.61 14.80 21.85 24.00 23.29 28.99 25.48 24.76 52.33 143.07 129.30 225.09 MULTICOM‑CLUSTER 12
13 circle 139.10 118.02 143.24 10.41 9.94 20.81 22.10 19.24 -8.65 21.62 17.83 28.31 19.84 16.80 34.49 23.20 17.93 13.41 17.29 15.29 26.80 24.64 20.99 28.07 139.10 118.02 143.24 circle 13
14 RBO‑Proteus 137.22 120.26 247.75 18.33 14.50 35.01 8.91 7.42 25.25 19.62 17.12 37.97 28.72 24.73 48.03 23.67 20.33 28.98 22.71 21.62 39.96 15.26 14.54 32.55 137.22 120.26 247.75 RBO‑Proteus 14
15 FAMSD 136.91 115.13 189.50 14.15 11.65 27.02 17.65 14.82 17.61 21.50 16.54 27.65 21.07 18.32 31.52 22.25 18.09 17.29 15.29 14.24 25.09 25.00 21.47 43.32 136.91 115.13 189.50 FAMSD 15
16 MUFOLD‑MD 135.70 119.72 242.80 23.58 20.17 36.70 9.28 8.55 26.49 20.12 19.75 41.03 25.41 20.73 42.18 18.75 17.17 27.03 24.86 21.57 43.13 13.70 11.78 26.24 135.70 119.72 242.80 MUFOLD‑MD 16
17 MULTICOM‑CMFR 135.59 119.10 215.87 10.94 10.47 22.62 21.67 18.78 40.85 18.75 16.54 28.15 22.73 15.98 31.93 18.09 14.87 20.74 17.57 16.86 23.98 25.84 25.60 47.60 135.59 119.10 215.87 MULTICOM‑CMFR 17
18 GeneSilicoMetaServer 135.46 115.92 97.29 10.68 10.08 15.96 18.72 14.86 -14.09 19.62 17.42 18.74 22.31 18.59 31.38 18.66 14.43 10.70 18.43 16.86 5.48 27.04 23.68 29.12 135.46 115.92 97.29 GeneSilicoMetaServer 18
19 MULTICOM‑RANK 134.62 121.39 209.38 11.21 10.14 16.41 20.82 18.24 38.37 19.12 16.75 24.36 22.52 19.90 32.61 17.90 15.31 21.43 17.57 16.29 23.93 25.48 24.76 52.27 134.62 121.39 209.38 MULTICOM‑RANK 19
20 GS‑MetaServer2 134.01 116.37 96.84 10.68 10.08 15.96 17.27 15.31 -14.54 19.62 17.42 18.74 22.31 18.59 31.38 18.66 14.43 10.70 18.43 16.86 5.48 27.04 23.68 29.12 134.01 116.37 96.84 GS‑MetaServer2 20
21 PS2‑server 133.69 117.14 200.40 11.57 9.85 17.78 19.21 16.84 11.52 15.38 13.00 27.03 22.52 18.80 35.80 17.14 15.37 24.83 21.43 18.76 29.37 26.44 24.52 54.07 133.69 117.14 200.40 PS2‑server 21
22 METATASSER 133.09 115.81 253.05 14.50 12.22 31.97 10.73 7.30 26.37 19.75 17.42 37.51 21.90 19.15 43.60 21.50 17.17 33.78 19.71 18.91 34.29 25.00 23.64 45.53 133.09 115.81 253.05 METATASSER 22
23 SAM‑T06‑server 132.88 120.14 165.61 10.23 9.52 23.21 20.06 17.10 13.71 14.00 13.67 28.72 20.45 16.94 28.11 20.55 18.66 19.90 22.71 21.09 19.97 24.88 23.16 31.99 132.88 120.14 165.61 SAM‑T06‑server 23
24 GS‑KudlatyPred 132.79 105.97 210.54 4.00 2.91 13.69 18.99 9.82 20.67 14.88 13.29 17.75 28.93 23.83 41.13 23.11 18.88 27.97 22.57 19.33 45.76 20.31 17.91 43.57 132.79 105.97 210.54 GS‑KudlatyPred 24
25 3DShot2 131.92 111.24 137.86 10.23 8.99 15.88 21.14 16.74 23.54 18.38 15.29 21.94 25.62 22.25 32.06 11.36 11.27 0.62 22.71 16.71 9.90 22.48 19.99 33.92 131.92 111.24 137.86 3DShot2 25
26 Pcons_multi 131.12 117.55 185.09 9.61 8.87 17.58 19.47 16.97 40.88 15.25 13.75 26.22 23.14 20.45 32.98 23.11 19.03 12.94 16.14 15.76 16.85 24.40 22.72 37.64 131.12 117.55 185.09 Pcons_multi 26
27 COMA‑M 131.09 115.81 138.24 8.72 8.10 -1.07 20.06 17.36 21.39 17.62 14.17 17.03 25.41 21.56 15.75 14.39 12.60 6.19 17.00 14.62 19.20 27.89 27.40 59.75 131.09 115.81 138.24 COMA‑M 27
28 FEIG 130.91 113.26 201.00 10.59 9.34 17.14 21.57 17.70 45.43 15.50 13.46 25.44 26.86 23.97 39.59 15.06 13.04 10.95 16.57 11.95 25.49 24.76 23.80 36.96 130.91 113.26 201.00 FEIG 28
29 COMA 130.11 115.04 138.24 8.72 8.10 -1.07 19.21 16.58 21.39 17.62 14.38 17.03 25.41 21.56 15.75 14.39 12.60 6.19 17.00 14.62 19.20 27.76 27.20 59.75 130.11 115.04 138.24 COMA 29
30 nFOLD3 130.00 112.19 195.42 11.65 9.19 24.13 16.68 15.29 17.48 18.25 14.29 27.84 23.76 20.32 32.38 17.80 13.86 24.37 16.86 16.24 27.91 25.00 23.00 41.31 130.00 112.19 195.42 nFOLD3 30
31 fais‑server 129.80 107.91 206.49 15.48 14.00 32.24                   19.12 15.83 35.88 24.17 21.01 42.88 19.22 14.62 33.66 34.86 29.43 38.68 16.95 13.02 23.15 129.80 107.91 206.49 fais‑server 31
32 Phyre_de_novo 128.91 110.69 221.25 11.74 10.35 25.22 20.98 16.22 37.80 16.12 13.12 28.40 19.21 16.32 31.74 16.48 13.70 17.25 19.14 16.86 31.40 25.24 24.12 49.44 128.91 110.69 221.25 Phyre_de_novo 32
33 HHpred4 127.93 105.55 109.45 7.56 6.23 3.02 16.79 14.29 15.99 19.25 15.50 4.52 26.86 22.04 31.31 13.07 9.91 -16.05 17.00 12.10 15.74 27.40 25.48 54.92 127.93 105.55 109.45 HHpred4 33
34 HHpred2 127.56 105.24 124.01 7.56 6.23 3.02 16.68 13.64 16.49 17.38 15.25 19.05 26.86 22.86 29.39 15.62 12.50 -11.97 17.14 11.24 15.25 26.32 23.52 52.78 127.56 105.24 124.01 HHpred2 34
35 Pcons_local 125.91 107.32 114.47 10.85 8.87 22.68 18.78 15.04 -10.40 15.50 14.12 30.62 23.14 20.45 33.61 18.09 12.53 8.17 16.71 15.24 1.67 22.84 21.07 28.12 125.91 107.32 114.47 Pcons_local 35
36 HHpred5 125.24 105.85 91.96 7.56 6.23 3.02 18.08 15.86 3.46 18.75 15.92 6.44 26.86 22.04 31.31 13.07 9.91 -16.05 17.00 16.14 18.43 23.92 19.75 45.35 125.24 105.85 91.96 HHpred5 36
37 Phyre2 124.22 110.72 182.80 10.68 8.48 18.00 16.31 14.72 34.58 19.50 16.71 26.96 20.25 19.28 29.12 14.02 12.25 3.88 17.86 15.52 24.79 25.60 23.76 45.47 124.22 110.72 182.80 Phyre2 37
38 3D‑JIGSAW_AEP 123.08 110.38 99.04 8.36 7.27 -6.52 17.54 15.18 11.30 12.12 11.42 -10.35 25.41 20.52 30.31 14.30 13.04 6.15 20.71 19.19 22.37 24.64 23.76 45.78 123.08 110.38 99.04 3D‑JIGSAW_AEP 38
39 MUSTER 121.72 105.85 185.58 11.83 10.59 24.06 7.83 6.87 4.38 18.88 15.00 28.98 21.28 18.18 35.05 16.67 14.96 19.59 17.71 14.33 31.08 27.52 25.92 42.44 121.72 105.85 185.58 MUSTER 39
40 Poing 120.95 109.28 190.72 10.77 10.35 19.76 15.77 14.65 29.06 21.00 17.42 27.16 17.56 15.98 24.13 16.38 14.49 23.09 24.57 22.57 31.91 14.90 13.82 35.61 120.95 109.28 190.72 Poing 40
41 3Dpro 120.42 105.36 165.24 12.01 10.62 22.82 15.77 13.23 12.23 15.38 12.96 19.64 17.98 16.12 28.71 16.67 12.28 18.87 19.29 19.00 23.65 23.32 21.15 39.32 120.42 105.36 165.24 3Dpro 41
42 BioSerf 118.61 98.42 215.36 13.08 9.88 27.71 9.66 6.72 21.14 14.12 13.12 36.85 27.89 21.69 41.57 14.21 11.55 15.65 21.14 19.67 36.72 18.51 15.79 35.72 118.61 98.42 215.36 BioSerf 42
43 CpHModels 118.60 108.09 8.53 10.59 9.85 1.21 17.86 16.20 -14.63 13.62 12.12 -8.26 22.31 20.11 6.51 15.72 13.83 17.13 18.43 18.43 -16.84 20.07 17.55 23.41 118.60 108.09 8.53 CpHModels 43
44 3D‑JIGSAW_V3 118.09 104.19 96.16 7.03 6.26 -15.10 18.83 14.72 16.69 12.25 9.46 -9.12 23.97 21.07 22.14 15.06 13.86 8.52 13.43 12.10 16.40 27.52 26.72 56.63 118.09 104.19 96.16 3D‑JIGSAW_V3 44
45 FOLDpro 118.00 102.32 128.04 9.79 9.49 17.51 15.77 13.23 12.23 13.88 12.29 13.49 19.21 15.29 27.34 16.67 12.28 18.87 20.57 20.19 12.54 22.11 19.55 26.06 118.00 102.32 128.04 FOLDpro 45
46 mariner1 117.77 102.68 141.65 11.03 10.08 17.87 19.58 17.40 19.01 19.88 17.29 31.69 20.87 17.49 21.33 16.86 14.96 11.80 17.29 15.52 25.55 12.26 9.94 14.40 117.77 102.68 141.65 mariner1 46
47 ACOMPMOD 116.76 104.38 78.53 9.79 9.04 11.83 17.44 15.58 -10.62 14.25 12.83 16.50 18.59 15.70 21.48 15.72 12.66 2.82 18.86 18.86 24.35 22.11 19.71 12.17 116.76 104.38 78.53 ACOMPMOD 47
48 FUGUE_KM 114.97 102.51 39.73 9.79 8.96 12.86 16.25 13.61 -15.32 13.62 13.04 9.69 15.29 13.57 5.73 18.47 13.67 1.65 18.71 18.43 3.56 22.84 21.23 21.56 114.97 102.51 39.73 FUGUE_KM 48
49 Phragment 114.95 100.39 195.07 14.59 12.52 22.30 16.31 14.72 34.58 15.75 13.42 25.47 19.63 17.42 28.02 16.10 12.97 16.76 17.43 15.48 30.94 15.14 13.86 37.00 114.95 100.39 195.07 Phragment 49
50 pipe_int 114.94 97.20 167.26 11.74 10.73 28.78 19.64 16.06 33.57 13.12 11.38 23.93 23.97 20.39 19.19 15.81 14.08 21.81 16.00 12.38 26.09 14.66 12.18 13.89 114.94 97.20 167.26 pipe_int 50
51 MUFOLD‑Server 111.50 88.32 179.76 11.92 8.99 24.80 8.05 6.76 13.70 19.00 17.08 29.42 22.11 17.70 33.91 22.63 14.80 29.14 17.57 15.62 29.19 10.22 7.37 19.60 111.50 88.32 179.76 MUFOLD‑Server 51
52 FFASstandard 110.93 94.72 -20.34 8.72 6.43 -7.11 17.81 15.77 -13.65 18.62 15.79 -14.71 17.36 14.46 -0.61 15.53 10.61 14.48 18.71 18.48 -15.90 14.18 13.18 17.16 110.93 94.72 -20.34 FFASstandard 52
53 FFASsuboptimal 110.23 99.52 -11.38 5.52 4.83 -22.81 17.86 16.04 -13.26 19.25 16.75 -11.32 17.77 17.29 -0.56 15.72 12.31 5.05 19.57 18.48 6.08 14.54 13.82 25.44 110.23 99.52 -11.38 FFASsuboptimal 53
54 Frankenstein 110.21 99.40 167.58 10.59 9.88 22.04                   15.38 13.92 29.39 23.35 20.52 34.19 17.52 14.55 16.57 16.57 15.05 25.52 26.80 25.48 39.87 110.21 99.40 167.58 Frankenstein 54
55 keasar‑server 106.80 93.10 124.66 8.63 7.41 11.16                   18.12 14.50 15.54 16.74 15.56 17.21 18.56 13.64 14.33 20.71 18.91 27.41 24.04 23.08 39.01 106.80 93.10 124.66 keasar‑server 55
56 Distill 104.88 93.69 180.73 12.99 10.85 25.55                   17.12 16.00 31.89 23.14 20.04 35.63 14.30 14.11 28.41 24.71 21.95 37.50 12.62 10.74 21.75 104.88 93.69 180.73 Distill 56
57 SAM‑T02‑server 103.61 93.20 -40.69 9.52 8.45 1.28 18.08 15.93 -15.99 11.50 10.17 -25.29 17.36 15.56 7.66 10.89 9.75 -29.17 16.43 16.43 11.57 19.83 16.91 9.25 103.61 93.20 -40.69 SAM‑T02‑server 57
58 forecast 102.38 88.29 125.96 11.74 11.00 18.08 9.50 8.76 8.62 13.50 11.21 19.65 18.39 17.01 20.70 16.57 14.93 17.66 18.14 13.76 23.74 14.54 11.62 17.51 102.38 88.29 125.96 forecast 58
59 mGenTHREADER 98.96 89.80 146.38 10.41 9.99 17.56 5.15 4.04 22.78 15.88 12.62 23.95 17.98 16.67 30.44 13.73 12.25 7.26 18.86 18.57 22.13 16.95 15.66 22.26 98.96 89.80 146.38 mGenTHREADER 59
60 huber‑torda‑server 91.83 79.76 23.98 12.19 10.35 6.38 6.76 5.83 -9.42 16.88 14.46 14.70 17.56 13.43 12.43 10.98 9.69 -23.18 17.00 16.62 15.98 10.46 9.38 7.09 91.83 79.76 23.98 huber‑torda‑server 60
61 FFASflextemplate 90.12 73.68 -7.18 7.92 5.96 -8.14 16.63 13.84 -14.26 18.62 15.79 -14.71 17.36 14.46 -0.61 15.53 10.61 14.48                   14.06 13.02 16.06 90.12 73.68 -7.18 FFASflextemplate 61
62 RANDOM 88.35 74.49 88.35 10.71 9.22 10.71 7.23 6.37 7.23 12.96 10.74 12.96 17.30 14.39 17.30 16.03 13.39 16.03 14.68 12.24 14.68 9.44 8.14 9.44 88.35 74.49 88.35 RANDOM 62
63 LEE‑SERVER 83.09 74.65 140.56 12.19 10.79 21.10                                     19.01 16.74 31.88 21.12 20.04 26.95                   30.77 27.08 60.63 83.09 74.65 140.56 LEE‑SERVER 63
64 LOOPP_Server 75.52 67.94 74.17 10.77 9.99 7.35 10.09 9.05 8.43                                     18.28 16.19 15.66 19.43 18.09 24.98 16.95 14.62 17.75 75.52 67.94 74.17 LOOPP_Server 64
65 schenk‑torda‑server 75.15 65.50 55.12 9.16 8.57 10.71 5.69 4.72 -0.21 9.88 8.62 8.41 16.12 14.95 21.03 10.32 8.30 -9.78 14.00 11.81 12.52 9.98 8.53 12.44 75.15 65.50 55.12 schenk‑torda‑server 65
66 OLGAFS 58.50 51.66 -71.31 5.96 5.81 -26.73                   11.62 9.88 -12.12 14.46 13.91 -9.80 12.60 8.49 -22.24 13.86 13.57 -0.42                   58.50 51.66 -71.31 OLGAFS 66
67 panther_server 56.30 48.67 -114.06                                     10.75 8.79 -4.81 12.81 11.43 -7.14 4.36 3.54 -76.15 8.43 7.52 -29.92 19.95 17.39 3.96 56.30 48.67 -114.06 panther_server 67
68 rehtnap 44.34 41.17 -242.23 2.58 2.49 -35.09 3.43 3.20 -43.65 8.00 7.67 -33.23 9.50 9.23 -25.69 4.74 4.74 -76.48 4.43 3.86 -36.87 11.66 9.98 8.78 44.34 41.17 -242.23 rehtnap 68
69 mahmood‑torda‑server 41.87 36.24 37.19                                                       16.12 14.74 22.81 10.89 8.55 -4.28 14.86 12.95 18.66                   41.87 36.24 37.19 mahmood‑torda‑server 69
70 Pushchino 41.28 35.23 -72.68 7.21 6.85 -3.72                   6.12 5.62 -35.62 0.00 0.00 -32.79 9.56 7.10 -16.40                   18.39 15.66 15.85 41.28 35.23 -72.68 Pushchino 70
71 BHAGEERATH                                                                                                                                                                   BHAGEERATH 71
72 Fiser‑M4T                                                                                                                                                                   Fiser‑M4T 72
73 YASARA                                                                                                                                                                   YASARA 73
74 test_http_server_01                                                                                                                                                                   test_http_server_01 74