Correspondence between target sequence and PDB

For those wanting it quick: download target structures modified to match sequences.

Unfortunately, target sequences often do not correspond to pdb sequences exactly. Since all server models were made for the target sequences, we modified pdb files to match target sequences, both in residue numbers and amino acid types. Here, we show mapping between the two sequences and list changes made to pdb files. For each target, links to raw pdb, modified pdb, PyMOL scripts to display modified pdb and domain definitions, and a link to the target page are provided, followed by an alignment between the target sequence and pdb sequence:

in each alignment, the first line is target sequence, the last line is PDB sequence
the middle line shows correspondence status for each position:

| matched
~ one of the sequences lacks amino acid
: amino acid in target differs from amino acid in pdb (also shown on yellow background)
* position removed from pdb as its SD of Cα displacement in NMR models is above 3.5Å cutoff

mouse-over amino acid shows residue number
pdb sequence is colored by domain from blue to red, gray letters are not included in any domain
discrepancies between target and pdb sequences are noted below an alignment, changes made to pdb sequence are listed
residue ranges for domains are given

target

pdb

T0387 2vsp.pdb T0387.pdb PyMOL PyMOL of domains Target page

T0387    1 SMKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCGKKAQDTV 91
           ~:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~
2vspA    2 -AKPKLCRLAKGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTLLVCG------- 84

Residue change log: change 2 A to M;

Single domain protein: target 2-84 ; pdb 2-84

T0388 3cyn.pdb T0388.pdb PyMOL PyMOL of domains Target page

T0388    1 ENLYFQSMINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIKKKEDL 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3cynA   36 ENLYFQSMINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIKKKEDL 209

We suggest to evaluate this target as a single domain spanning whole chain. However, N-terminal segment (target 1-8, pdb 36-43) extends away and may be removed, resulting in this domain definition:

1st domain: target 9-174 ; pdb 44-209

T0389 2vsw.pdb T0389.pdb PyMOL PyMOL of domains Target page

T0389    1 MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEGKSTLVPTCISQPAHHHHHH 153
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~
2vswA    5 MIGTQIVTERLVALLESGTEKVLLIDSRPFVEYNTSHILEAININCSKLMKRRLQQDKVLITELIQHSAKHKVDIDCSQKVVVYDQSSQDVASLSSDCFLTVLLGKLEKSFNSVHLLAGGFAEFSRCFPGLCEG------------------- 138

Single domain protein: target 1-134 ; pdb 5-138

T0390 3czu.pdb T0390.pdb PyMOL PyMOL of domains Target page

T0390    1 AAPEHHHHHHDYDIPTTENLYFQGAMDAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSGKITHSPQAHVNPQEKRLAADDP 182
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~
3czuA   18 ----------------------------ADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYE--SVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKEGHSYYYISKPIHQHEDRCLRLKVTVSG---------------------- 149

Single domain protein: target 29-66, 69-160 ; pdb 18-55, 58-149

T0391 3d89.pdb T0391.pdb PyMOL PyMOL of domains Target page

T0391    1 SDPEISEQDEEKKKYTSVCVGREEDIRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPFKCDSDYYATGEFKVIQSSS 157
           ~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~||||||||||||||||||||||||||||||||||||||||||||||||~~~
3d89A   14 -------------KYTSVCVGREEDIRKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLATGEGLYQSINP-----KPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPFKCDSDYYATGEFKVIQ--- 154

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein, although domains are tightly associated and the boundary between them is not clearly defined:

1st domain: target 14-54, 118-154 ; pdb 14-54, 118-154

2nd domain: target 55-101, 107-117 ; pdb 55-101, 107-117

T0392 2vsv.pdb T0392.pdb PyMOL PyMOL of domains Target page

T0392    1 MHHHHHHSSGVDLGTENLYFQSMPRSIRFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLLDEVTF 109
           ~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~
2vsvA  -15 -------SSGVDLGTENLYFQSMPRSIRFTAEEGDLGFTLRGNAPVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMKVVSLL----- 594

We suggest to evaluate this target as a single domain spanning whole chain. However, N-termial segment (target 1-23, pdb -15-0) is introduced in cloning, protrudes away from the domain in 3D structure (interact with another chain) and can be deleted for domain evaluation, resulting in this domain definition:

1st domain: target 24-104 ; pdb 514-594

T0393 3d1l.pdb T0393.pdb PyMOL PyMOL of domains Target page

T0393    1 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTFSKQREVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTGPAIRYDENVIGNHLRMLADDPAMQRLYELLSRSIHERQ 263
           ~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d1lA    4 ---SIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAGSIPMNVWEGHVPHYGVFYPMQTF---REVDFKEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKSLHLAAVFTCNFTNHMYALAAELLKKYNLPFDVMLPLIDETARKVHELEPKTAQTGPAIRYDENVIGNHLRMLADDPAMQRLYELLSRSIHERQ 263

Residue change log: change 95, 104, 120, 185, 203, 241, 248, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 3-domain protein:

1st domain: target 4-123, 127-163 ; pdb 4-123, 127-163

2nd domain: target 164-263 ; pdb 164-263

T0394 3dcy.pdb T0394.pdb PyMOL PyMOL of domains Target page

T0394    1 NLYFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKFTHAFSSDLMRTKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQKEQFSQGSPSNCLETSLAEIFPLGKNHSSKVNSDSGIPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGMSLFIINFEEGREVKPTVQCICMNLQDHLNGLTETR 275
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~|||||||||||||~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~
3dcyA   -4 NLYFQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKFTHAFSSDLMRTKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAKAAREECPVFTPPGGETLDQVKMRGIDFFEFLCQLILKEADQK---------NCLETSLAEIFPL-------------IPGLAASVLVVSHGAYMRSLFDYFLTDLKCSLPATLSRSELMSVTPNTGMSLFIINFEEGREVKPTVQCICMNLQDHLN------ 264

Residue change log: change 60, 66, 79, 106, 130, 202, 227, 235, 257, MSE to MET;

Single domain protein: target 1-155, 165-177, 191-269 ; pdb -4-150, 160-172, 186-264

T0395 PDB unreleased T0395.pdb PyMOL PyMOL of domains Target page

T0395    1 MRLGDAAELCYNLTSSYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDYYPGWYLVDDKLERAGRIKKK 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
xxxxA    1 MRLGDAAELCYNLTSSYLQIAAESDSIIAQTQRAINTTKSILINETFPKWSPLNGEISFSYNGGKDCQVLLLLYLSCLWEYYIVKL-----------------PTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKCETMAEAFETFLQVFPETKAIVIGIRHTDPFGEHLKPIQKTDANWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEETLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDYYPGWYLVDDKLERAGRIKKK 304

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 1-86, 104-197 ; pdb 1-103, 104-197

2nd domain: target 198-304 ; pdb 198-304

T0396 PDB unreleased T0396.pdb PyMOL PyMOL of domains Target page

T0396    1 GSMLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQSILK 105
           ~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
xxxxA    3 --MLHWGPKYWRSLHLYAIFFSDAPSWKEKYEAIQWILNFIESLPCTRCQHHAFSYLTKNPLTLNNSEDFQYWTFAFHNNVNNRLNKKIISWSEYKNIYEQSIL- 104

Single domain protein: target 3-104 ; pdb 3-104

T0397 3d4r.pdb T0397.pdb PyMOL PyMOL of domains Target page

T0397    1 --------MKIPKIYVEGELNDGDRVAIEKDGNAIIFLEKDEEYSGNGKLLYQVIYDDLAKYMSLDTLKKDVLIQYPDKHTLTYLKAGTKLISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPSERANYVFYMLEE 150
           ~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d4rA   -7 HENLYFQGMKIPKIYVEGELNDGDRVAIEKDGNAIIFLEKDEEYSGNGKLLYQVIYDDLAKYMSLDTLKKDVLIQYPDKHTLTYLKAGTKLISVPAEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEIPSERANYVFYMLEE 150

Residue change log: change 1, 55, 97, 133, 147, MSE to MET; remove -7-HENLYFQG-0 as it is not present in target sequence;

2-domain protein, both domains used in evaluation:

1st domain: target 1-82 ; pdb 1-82

2nd domain: target 83-150 ; pdb 83-150

T0398 3d4o.pdb T0398.pdb PyMOL PyMOL of domains Target page

T0398    1 -MLTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVKLLAEPS 292
           ~|||||||||||||||||||||||||||||||||||||||~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3d4oA    0 GMLTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLD--FIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKALLVPGLPGIVAPKTAGRILADVLVKLLAEP- 291

Residue change log: change 1, 48, 89, 112, 123, 142, 143, 167, 196, 198, 233, MSE to MET; remove 0 G as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, this is a 2-domain protein, duplication. Evolutionarily, this is a domain swap of the last α-helix (structural event), not an insertion of one domain into another (genetic event) after gene duplication and fusion:

1st domain: target 1-39, 42-128, 273-291 ; pdb 1-39, 42-128, 273-291

2nd domain: target 129-272 ; pdb 129-272

T0399 3d4e.pdb T0399.pdb PyMOL PyMOL of domains Target page

T0399    1 MSMKKTKNWLLVFLTVTFCFLMLGCQSKEDKKGGTKPSNEAALTKTENLDFRLSFNKIKVTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKIGKEDYDELKIGESYKKVVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFENGLLKNKTQKDLE 206
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d4eA   45 --------------------------------------------KTENLDFRLSFNKIKVTTDQNHFSGGTSIEQLKQWFGDPNKSEQRNAGNITLDSYTWVKDGAVINAQLYKNSTVARSISNFSFSREAKIGKEDYDELKIGESYKKIVEKLGEPDVLSQSMSSDKEEMQTVWSSGIKTKSSSATIELYFENGLLKNKTQKDLE 206

Residue change log: change 150 I to V; change 164, 171, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein (a duplication of an ancestral unit):

1st domain: target 45-128 ; pdb 45-128

2nd domain: target 129-206 ; pdb 129-206

T0400 3d8p.pdb T0400.pdb PyMOL PyMOL of domains Target page

T0400    1 MAINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD 162
           ~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~||||||||||~
3d8pA    2 -AINIIEYNRSYKEELIEFILSIQKNEFNIKIDRDDQPDLENIEHNYLNSGGQFWLAINNHQNIVGTIGLIRLDNNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKEQNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKL--DNRFYYRNLK- 161

Residue change log: change 77, 83, 104, MSE to MET;

Single domain protein: target 2-149, 152-161 ; pdb 2-149, 152-161

T0401 3d5p.pdb T0401.pdb PyMOL PyMOL of domains Target page

T0401    1 -MEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKLGDNYIYIWAIEDVIAYNHDYGIQKYLQKEYWAFGMDGDIGYILHLSDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAIYLNFNKLQNVANNNLTT 143
           ~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~
3d5pA    0 GMEVIESKWYKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKLGDNYIYIWAIEDVIAYNHDYGIQKYLQKEYWAFGMDGDIGYILHLSDNSIYRVDLGDLDITSIKYIAPSFDDFLGKAIYLNFNK----------- 132

Residue change log: change 1, 83, MSE to MET; remove 0 G as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, N-terminal segment is swapped with another chain. N-terminal segment (target 1-3, pdb 0-3) can be removed for domain evaluation, resulting in this domain definition:

1st domain: target 4-132 ; pdb 4-132

T0402 3db0.pdb T0402.pdb PyMOL PyMOL of domains Target page

T0402    1 MENELEDKILAILEQHQVGVLTSVQGDFPHARYMTFLHDGLTLYTPSGKELPKTEEVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDESIKERIWENISKDWFQGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG 139
           |||||||||||||||||||||||||||||||||||||||||||||||~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||||~~~~~~~~~~~~~
3db0A    1 MENELEDKILAILEQHQVGVLTSVQGDFPHARYMTFLHDGLTLYTPS----PKTEEVRRNPHVCVLIGYDSPGSAFLEINGLASLEEDESIKERIWENISKDWFQ------FVVIKIVPEQIRILN------------- 126

Residue change log: change 1, 34, MSE to MET;

Single domain protein: target 1-47, 52-105, 112-126 ; pdb 1-47, 52-105, 112-126

T0404 3dfe.pdb T0404.pdb PyMOL PyMOL of domains Target page

T0404    1 MSKRANKLVIVTEKVLLKKVAKIIEEAGATGYTVVDTGGKGSRNVRSTGKPNTSDTDSNVKFEVLTENREMAEKIADQVAIKFFTDYAGIIYICEAEVLYGRTFCGPDGC 110
           ~||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~
3dfeA    2 -SKRANKLVIVTEKVLLKKVAKIIEEAGATGYTVVDTGG------------------SNVKFEVLTENREMAEKIADQVAIKFFTDYAGIIYICEAEVLYG--------- 101

Residue change log: change 71, MSE to MET;

Single domain protein: target 2-39, 58-101 ; pdb 2-39, 58-101

T0405 PDB unreleased T0405.pdb PyMOL PyMOL of domains Target page

T0405    1 MNETEKLVAALLERNFGKNIGTRYPGNEAAQMRAEEVIGEIAIVIAPLVEKLGIENKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNGTSTDTEKYWRDLPTYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLLGEVVEMNEALGADFRVKLVFESDMRIRLRVYEVEQIAIEVHFLDNHDTEQQHLGYDVSLDADFTEKARLLLRQGILTENLGLEALKAYMKSVLPIAHSLKNLEHLTFEETKKLTKLLTQEEPKIMEDTDLTSKALDFLQKAAQQ 282
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
xxxxA    2 -NETEKLVAALLERNFGKNIGTRYPGNEAAQMRAEEVIGEIAIVIAPLVEKLGIENKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNGTSTDTEKYWRDLPTYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLLGEVVEMNEALGADFRVKLVFESDMRIRLRVYEVEQIAIEVHFLDNHDTEQQHLGYDVSLDADFTEKARLLLRQGILTENLGLEALKAYMKSVLPIAHSLKNLEHLTFEETKKLTKLLTQEEPKIMEDTDLTSKALDFLQKAAQQ 282

2-domain protein, both domains used in evaluation:

1st domain: target 2-73 ; pdb 2-73

2nd domain: target 74-282 ; pdb 74-282

T0406 3di5.pdb T0406.pdb PyMOL PyMOL of domains Target page

T0406    1 MYQTIEGFLQSWTYETESTQKMLDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFEGETKDYPVPTSAKTIADGYRKVNTAFVEALQSEWTDKDLTTINDFFGRPMPNSIFLMTLINHQNHHRGQMTVLMRQAGLTVPGVYGPAKEEWATAGMEAPKM 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~
3di5A    1 MYQTIEGFLQSWTYETESTQKMLDVLTDESLSQEIAPGHWTLGRVAWHIVTAIPVILSGTGLKFEGETKDYPVPTSAKTIADGYRKVNTAFVEALQSEWTDKDLTTINDFFGRPMPNSIFLMTLINHQNHHRGQMTVLMRQAGLTVPGVY----------------- 150

Residue change log: change 1, 22, 115, 122, 135, 139, MSE to MET;

Single domain protein: target 1-150 ; pdb 1-150

T0407 3e38.pdb T0407.pdb PyMOL PyMOL of domains Target page

T0407    1 MEVKKVLVSAFLLTTCLMSGQAQRRNEIQVPDLDGYTTLKCDFHMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRAMAPGHFNAIFLSDSNPLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQWCLDKNLTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRTAAYFHELLIGREDLLRPFFEKCVKIEEVSRNEQGVTLSITNVTDLVLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIKGGDVNFEVTNFIVAPDKGLKYTISL 363
           ~~~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3e38A   22 ---------------------AQRRNEIQVPDLDGYTTLKCDFHMHSVFSDGLVWPTVRVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLIKGSEITRAMAPGHFNAIFLSDSNPLEQKDYKDAFREAKKQGAFMFWNHPGWDSQQPDTTKWWPEHTALYQEGCMHGIEVANGHLYMPEAIQWCLDKNLTMIGTSDIHQPIQTDYDFEKGEHRTMTFVFAKERSLQGIREALDNRRTAAYFHELLIGREDLLRPFFEKCVKIEEVSRNEQGVTLSITNVTDLVLKLKKTAHDTLLVYFRDMTLKPHTRYTVRIGFKQGIKGGDVNFEVTNFIVAPDKGLKYTISL 363

Residue change log: change 45, 118, 153, 183, 195, 209, 233, 319, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 22-266 ; pdb 22-266

2nd domain: target 267-363 ; pdb 267-363

T0408 3d7i.pdb T0408.pdb PyMOL PyMOL of domains Target page

T0408    1 MKNEVFFGEGMKVVKEKYPDLYDIIVKLNDTVFTGKTLDYKTQKLIAIGIVASRCDEVAIEKQMKSAMKELGITKEEIADVLRVVLLTSGMPAFTKAMKILEKL 104
           ~~~~~~~|||||||:::|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d7iA    8 -------GEGMKVVAAAYPDLYDIIVKLNDTVFTGKTLDYKTQKLIAIGIVASRCDEVAIEKQMKSAMKELGITKEEIADVLRVVLLTSGMPAFTKAMKILEKL 104

Residue change log: change 15 A to K; change 16 A to E; change 17 A to K; change 11, 64, 68, 91, 98, MSE to MET;

Single domain protein: target 8-104 ; pdb 8-104

T0409 3d0f.pdb T0409.pdb PyMOL PyMOL of domains Target page

T0409    1 --YRGPEAFLKLPKDLKDREALQDIMQDIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKKTEKGSWQIVQLP 103
           ~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d0fA  316 NAYRGPEAFLKLPKDLKDREALQDIMQDIGNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKKTEKGSWQIVQLP 420

Residue change log: change 341, MSE to MET; remove 316-NA-317 as it is not present in target sequence;

Single-domain protein:

1st domain: target 32-103 ; pdb 349-420

T0410 3d3l.pdb T0410.pdb PyMOL PyMOL of domains Target page

T0410    1 MHHHHHHSSGVDLGTENLDFEWTLKAGALEMALKRVYTLLSSWNCLEDFDQIFWGQKSALAEKVRQCWQDDELFSYQFLNGANPMLLRRSTSLPSRLVLPSGMEELRAQLEKELQNGSLFEADFILLDGIPANVIRGEKQYLAAPLVMLKMEPNGKLQPMVIQIQPPNPSSPTPTLFLPSDPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTGGGGHVQLLRRAAAQLTYCSLCPPDDLADRGLLGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAPCTMRMPPPTTKEDVTMATVMGSLPDVRQACLQMAISWHLSRRQPDMVPLGHHKEKYFSGPKPKAVLNQFRTDLEKLEKEITARNEQLDWPYEYLKPSCIENSVTSDSKGGYGSEFELRRQACGRTRAPPPPPLRSGC 541
           ~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3d3lA  176 ---------------------WTLKAGALEMALKRVYTLLSSWNCLEDFDQIFWGQKSALAEKVRQCWQDDELFSYQFLNGANPMLLRRSTSLPSRLVLPSGMEELRAQLEKELQNGSLFEADFILLDGIPA-----EKQYLAAPLVMLKMEPNGKLQPMVIQIQPPNPSSPTPTLFLPSDPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRY---------------------------GGHVQLLRRAAAQLTYCSLCPPDDLADRGLLGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVGLCQAQDRGFPVSFQSQSQLCHFLTMCVFTCTAQHAAINQGQLDWYAWVPNAPCTMRMPPPTTKEDVTMATVMGSLPDVRQACLQMAISWHLS----DMVPLGHHKEKYFSGPKPKAVLNQFRTDLEKLEKEITARNEQLDWPYEYLKPSCIENSVT--------------------------------- 662

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 22-69, 201-241, 269-444, 449-508 ; pdb 176-223, 355-395, 423-598, 603-662

2nd domain: target 70-132, 138-200 ; pdb 224-286, 292-354

T0411 3d1p.pdb T0411.pdb PyMOL PyMOL of domains Target page

T0411    1 MWKAVMNAWNGTESQSKNVSNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLDL 139
           ~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d1pA   20 -------------------SNIQSYSFEDMKRIVGKHDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFEKQIGIPKPDSAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMNDWVSHGGDKLDL 139

Residue change log: change 30, 126, MSE to MET;

Single domain protein: target 20-139 ; pdb 20-139

T0412 3d3o.pdb T0412.pdb PyMOL PyMOL of domains Target page

T0412    1 SNALFSSRDILEVLQDIHMETGETVAIATKNDIYLQYIQIIESVHALRFHVDENAIRPLTMSSNGWMLMSTMNDKAIDNTVRRANTITQKDGIRFEVDDMMARIRQVREQGYASAEHIPFVGGGTICVLLPMTIQGQPVTMGLGGALDRIKQNYDRYLELLLNGVQQLKKSDSFHQPI 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3d3oA   -2 SNALFSSRDILEVLQDIHMETGETVAIATKNDIYLQYIQIIESVHALRFHVDENAIRPLTMSSNGWMLMSTMNDKAIDNTVRRANTITQKDGIRFEVDDMMARIRQVREQGYASAEHIPFVGGGTICVLLPMTIQGQPVTMGLGGALDRIKQNYDRYLELLLNGVQQLKKSDSFHQ-- 173

Residue change log: change 16, 58, 64, 66, 69, 97, 98, 129, 138, MSE to MET;

Single domain protein: target 1-176 ; pdb -2-173

T0413 3d0k.pdb T0413.pdb PyMOL PyMOL of domains Target page

T0413    1 SNAMKPADLTNADRIALELGHAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLWFDGRMPDAAELARLAGSQSA 304
           ~~~~~~~||||||||||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~
3d0kA    5 -------DLTNADRIALELGHAGRNAIPYLD---NADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKLLIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPHAPFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIAT--PNLPSEPAALRQGPHRYARARHYYEAGQRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLWFDGRMPDAAELARLA----- 296

Residue change log: change 155, 205, 273, 286, MSE to MET;

Single domain protein: target 8-31, 35-219, 222-299 ; pdb 5-28, 32-216, 219-296

T0414 3d0j.pdb T0414.pdb PyMOL PyMOL of domains Target page

T0414    1 SNAMKPDIYENNREGILCVYKNEKWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQDSNCSMDNSDFCDLSKEEIEYIQTNARKLFEK 140
           ~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d0jA    0 --AMKPDIYENNREGILCVYKNEKWLVCIKNWKPDNDIEGIAHLEIHHSTDEQFILSAGKAILITAEKENDKFNIELTLMEKGKVYNVPAECWFYSITQKDTKMMYVQDSNCSMDNSDFCDLSKEEIEYIQTNARKLFEK 137

Residue change log: change 1, 77, 101, 102, 111, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, N-terminal segment (target 1-8, pdb 0-6) interacts with a symmetry mate, but does not form a swap. This segment can be removed for domain-based evaluation, resulting this domain definition:

1st domain: target 9-140 ; pdb 6-137

T0415 3d6w.pdb T0415.pdb PyMOL PyMOL of domains Target page

T0415    1 GKSVVTLKTTDGWIPVPFSKVMYLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIYPDTHSTFLLSMDNGERVPVSQSYASYFRKLLGF 109
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d6wA  106 GKSVVTLKTTDGWIPVPFSKVMYLEAKDKKTYVNAEELTGTHKYSLQEFEYLLPKDSFIRCHRSFIVNVNHIKAIYPDTHSTFLLSMDNGERVPVSQSYASYFRKLLGF 214

Residue change log: change 127, 192, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein (a duplication with rigid interactions between chromodomain-like duplicates):

1st domain: target 1-54 ; pdb 106-159

2nd domain: target 55-109 ; pdb 160-214

T0416 3d3q.pdb T0416.pdb PyMOL PyMOL of domains Target page

T0416    1 MTEMTKPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFEASQSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQMMLDEITTQINKRSSNHDCKRKHPRPSTREL 332
           ~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~
3d3qA    6 -----KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFE---ISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNRKRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFEASQSMQAIGYKELVPVIKGNISMENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERMSLQMMLDEITTQINKRS----------------- 315

Residue change log: change 41, 47, 59, 66, 128, 205, 221, 244, 262, 288, 298, 302, 303, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 6-114, 194-315 ; pdb 6-114, 194-315

2nd domain: target 115-119, 123-193 ; pdb 115-119, 123-193

T0417 3d3s.pdb T0417.pdb PyMOL PyMOL of domains Target page

T0417    1 SNAMRKDETSNTSPDISVAQPASALRYHLRPPRRNDGAAIHQLVSECPPLDLNSLYAYLLLCEHHAHTCVVAESPGGRIDGFVSAYLLPTRPDVLFVWQVAVHSRARGHRLGRAMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFFDRQAFGGADHDDEMLLRIGPFTHPPH 189
           ~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~
3d3sA    1 -------------------------RYHLRPPRRNDGAAIHQLVSECPPLDLNSLYAYLLLCEHHAHTCVVAESPGGRIDGFVSAYLLPTRPDVLFVWQVAVHSRARGHRLGRAMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFFDRQAFGGADHDDEMLLRIGPF----- 159

Residue change log: change 90, 152, MSE to MET;

Single domain protein: target 26-184 ; pdb 1-159

T0418 3d6j.pdb T0418.pdb PyMOL PyMOL of domains Target page

T0418    1 MKYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLISVPEDKSGCPL 222
           ~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~
3d6jA    2 -KYTVYLFDFDYTLADSSRGIVTCFRSVLERHGYTGITDDMIKRTIGKTLEESFSILTGITDADQLESFRQEYSKEADIYMNANTILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDRLKACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSGMTTAQEFQAYPYDRIISTLGQLI----------- 211

Residue change log: change 41, 81, 124, 189, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 2-16, 86-211 ; pdb 2-16, 86-211

2nd domain: target 17-85 ; pdb 17-85

T0419 3czp.pdb T0419.pdb PyMOL PyMOL of domains Target page

T0419    1 MFESAEVGHSIDKDTYEKAVIELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLKALEKDPQHSWKLSPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALATKERAKRQPHAAPLVSSLDNRGLLDSLDLGQYLDKDAYKEQLAAEQARLAGLIRDKRFRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQPYLWRFWRHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAYKKDK 496
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3czpA    1 MFESAEVGHSIDKDTYEKAVIELREALLEAQFELKQQARFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERL-------------SPLDWKQSEVYDRFVHYGERVLRRTSRDYAPWYVVEGADERYRALTVGRILLEGLQAALAT-----------------DNRGLLDSLDLGQYLDKDAYKEQLAAEQARLAGLIRDKRFRQHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEERAQPYLWRFWRHIPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDKQTQMERFKEREKTPYKRYKITEEDWRNRDKWDQYVDAVGDMVDRTSTEIAPWTLVEANDKRFARVKVLRTINDAIEAAYKKDK 496

Residue change log: change 1, 65, 112, 139, 417, 454, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 1-163, 177-237 ; pdb 1-176, 177-237

2nd domain: target 255-496 ; pdb 255-496

T0420 3d5n.pdb T0420.pdb PyMOL PyMOL of domains Target page

T0420    1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYVNEMLPLLMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTFKPNCKAVIPTHKGERGNPVLISKSLFNEIEKLRGDVGARVILNKIKIEELCFIECSEGVLIDIDKKEDLMRLRDFHP 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~
3d5nA    1 MNIGVIILAAGEGKRFGGDKLLAKIDNTPIIMRTIRIYGDLEKIIIVGKYVNEMLPLLMDQIVIYNPFWNEGISTSLKLGLRFFKDYDAVLVALGDMPFVTKEDVNKIINTFKPNCKAVIPTHKGERGNPVLISKSLFNEIEKLRGDVGARVILNKIKIEELCFIECSEGVLIDIDKK----------- 178

Residue change log: change 1, 32, 54, 59, 97, MSE to MET;

Single domain protein: target 1-178 ; pdb 1-178

T0421 3czq.pdb T0421.pdb PyMOL PyMOL of domains Target page

T0421    1 MALDEAPAEARPGSRAVELEIDGRSRIFDIDDPDLPKWIDEEAFRSDDYPYKKKLDREEYEETLTKLQIELVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGKDEAAIGEVDEKILGSGPGFLR 300
           ~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3czqA   12 -----------PGSRAVELEIDGRSRIFDIDDPDLPKWIDEEAFRSDDYPYKKKLDREEYEETLTKLQIELVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHDRRHDPLKIWKLSPMDIAALSKWDDYTGKRDRMLKETHTEHGPWAVIRGNDKRRSRINVIRHMLTKLDYDGKDEAAIGEVDEKILGSGPGFL- 299

Residue change log: change 78, 86, 108, 161, 182, 201, 222, 240, 270, MSE to MET;

Single domain protein: target 12-299 ; pdb 12-299

T0422 3d8b.pdb T0422.pdb PyMOL PyMOL of domains Target page

T0422    1 MHHHHHHSSGVDLGTENLYFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK 357
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~||||||||||||||||~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||
3d8bA  374 --------------------------------------------------------ERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQ------ESSRRIKTEFLVQLDG----SEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQT----------VRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK 674

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 57-191, 198-213, 218-250, 340-357 ; pdb 374-508, 515-530, 535-567, 657-674

2nd domain: target 251-308, 319-339 ; pdb 568-625, 636-656

T0423 3d01.pdb T0423.pdb PyMOL PyMOL of domains Target page

T0423    1 ---------MSDVIEGRLKELGFTLPVAAAPAANYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQVKAALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEPGRHARAAVGMASLPFNASVEIDAIVEIDV 156
           ~~~~~~~~~|||||||||||||||||||~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3d01A    1 GTENLYFQGMSDVIEGRLKELGFTLPVA-----NYVPFTISGNLLYVSGQLPMESGKIAVTGLVGRDVDVASAQRAAELCAVNILAQVKAALNGDLSKIRRVIKLNGFVASVPEFVEQHLVINGASNLIATVLGEPGRHARAAVGMASLPFNASVEIDAIVEI-- 163

Residue change log: change 10, 53, 146, MSE to MET; remove 1-GTENLYFQG-9 as it is not present in target sequence;

Single domain protein: target 1-19, 25-154 ; pdb 10-33, 34-163

T0424 3d37.pdb T0424.pdb PyMOL PyMOL of domains Target page

T0424    1 MQNNSYGYAVSVRVGGKEHRHWERYDIDSDFLIPADSFDFVIGRLGPEAAIPDLSGESCEVVIDGQIVMTGIIGSQRHGKSKGSRELSLSGRDLAGFLVDCSAPQLNVKGMTVLDAAKKLAAPWPQIKAVVLKAENNPALGKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGGADYSSPPVATLCWSRTDSRCNIERMDIEWDTDNRFSEVTFLAQSHGRSGDSAKHDLKWVYKDPTMTLHRPKTVVVSDADNLAALQKQAKKQLADWRLEGFTLTITVGGHKTRDGVLWQPGLRVHVIDDEHGIDAVFFLMGRRFMLSRMDGTQTELRLKEDGIWTPDAYPKKAEAARKRKGKRKGVSHKGKKGGKKQAETAVFE 381
           ~~~~~|||||||||||||||||||||||||||||||||||||||~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~|||||||||||||||||||||||~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3d37A    6 -----YGYAVSVRVGGKEHRHWERYDIDSDFLIPADSFDFVIGR-------PDLSGESCEVVIDGQIVMTGIIGSQRHGKSKGSRELSLSGRDLAGFLVDCSAPQLNVKGMTVLDAAKKLAAPWPQIKAVVLKAENNPALGKIDIEPGETVWQALTHIANSVGLHPWLEPDGTLVVGGADYSSPPVATLCWSRTDSRCNIERMDIEWDTDNRFSEVTFLAQSHG-------HDLKWVYKDPTMTLHRPKTVVVS--DNLAALQKQAKKQLADWRLEGFTLTITVGGHKTRDGVLWQPGLRVHVIDDEHGIDAVFFLMGRRFMLSRMDGTQTELRLKEDGIWTPDAYP---------------------------------- 347

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily, this is a 4-domain protein (a duplication of a β-barrel, each duplicate contains a smaller inserted domain):

1st domain: target 6-44, 52-93 ; pdb 6-44, 52-93

2nd domain: target 94-178 ; pdb 94-178

3rd domain: target 179-207, 278-347 ; pdb 179-207, 278-347

4th domain: target 208-224, 232-254, 257-277 ; pdb 208-224, 232-254, 257-277

T0425 3czx.pdb T0425.pdb PyMOL PyMOL of domains Target page

T0425    1 -MSKIICLTAGHSNTDPGAVNGSDREADLAQDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAANKTATGIEALSTPKNKRWCQVLGKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTTKWGICRAIADAIAMELGAAKV 181
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3czxA    0 AMSKIICLTAGHSNTDPGAVNGSDREADLAQDMRNIVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAANKTATGIEALSTPKNKRWCQVLGKAVAKKTGWKLRGEDGFKPDNAGQHSRLAYAQAGGIVFEPFFISNDTDLALFKTTKWGICRAIADAIAMELGAAKV 181

Residue change log: change 1, 32, 58, 174, MSE to MET; remove 0 A as it is not present in target sequence;

Single domain protein: target 1-181 ; pdb 1-181

T0426 3da2.pdb T0426.pdb PyMOL PyMOL of domains Target page

T0426    1 MHHHHHHSSGVDLGTENLYFQSMSRLSWGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGHSFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEKGKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRASF 283
           ~~~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3da2A    0 ---------------------SMSRLSWGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGHSFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEKGKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRASF 261

Single domain protein: target 22-283 ; pdb 0-261

T0427 3d3y.pdb T0427.pdb PyMOL PyMOL of domains Target page

T0427    1 ---MSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQAIFFLEGETEND 422
           ~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d3yA   -2 SNAMSVQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHETITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKKGNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLFKQLPFTPREEGKAAIFYNQPIRNVIEERTEREVLAQSKLNLAYNTDIYYGDSYYFALQVFNGIFGGFPHSKLFMNVREKEHLAYYASSSIDTFRGFMTVQTGIDGKNRNQVLRLISTELENIRLGKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTMLTAEEWIARINAVTIPEIQEVAKRLELQAIFFLEGETEND 422

Residue change log: change 1, 47, 89, 192, 289, 312, 353, 378, 382, MSE to MET; remove -2-SNA-0 as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 1-230 ; pdb 1-230

2nd domain: target 231-422 ; pdb 231-422

T0428 3d8h.pdb T0428.pdb PyMOL PyMOL of domains Target page

T0428    1 MGSSHHHHHHSSGLVPRGSTYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPIINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKYYLISEEELKAKMEAVANQGKAK 267
           ~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~
3d8hA   20 -------------------TYKLTLIRHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWTVLKELGNINCPIINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKSDPRWPGNELIYKGICPSCLPTTECLKDTVERVKPYFEDVIAPSIMSGKSVLVSAHGNSLRALLYLLEGMTPEQILEVNIPTACPLVLELDDYLKVTKKYYLI------------------- 248

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 20-107, 172-248 ; pdb 20-107, 172-248

2nd domain: target 108-171 ; pdb 108-171

T0429 3db3.pdb T0429.pdb PyMOL PyMOL of domains Target page

T0429    1 MHHHHHHSSGRENLYFQGMWDETELGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKIERPGE 178
           ~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3db3A  127 -------------------WDETELGLYKVNEYVDARDTNMGAWFEAQVVRVTRK-----------------EDVIYHVKYDDYPENGVVQMNSRDVRARARTIIKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKIERP-- 283

Residue change log: change 148, 199, 224, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 20-55, 73-100 ; pdb 127-162, 180-207

2nd domain: target 101-176 ; pdb 208-283

T0430 3dlz.pdb T0430.pdb PyMOL PyMOL of domains Target page

T0430    1 MHHHHHHSSGVDLGTENLYFQSMGECSQKGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLFK 357
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dlzA  470 ----------------------------KGPVPFSHCLPTEKLQRCEKIGEGVFGEVFQTIADHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRKIQEFHRTMLNFSSATDLLCQHSLFK 798

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 29-166 ; pdb 470-607

2nd domain: target 167-357 ; pdb 608-798

T0431 3dax.pdb T0431.pdb PyMOL PyMOL of domains Target page

T0431    1 MAKKTSSRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFIKTLQGHALNSLTESMMENLQRIMRPPVSSNSKTAAWVTEGMYSFCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQFDKVFPALVAGLPIHMFRTAHNAREKLAESLRHENLQKRESISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLNDIEFKYKFKHHHHHH 491
           ~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~
3daxA   24 ------SRRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLMGKYVHFITNPLSYHKVLCHGKYFDWKKFHFATSAKAFGHRSIDPMDGNTTENINDTFIKTLQGHALNSLTESMMENLQRIMR----------AWVTEGMYSFCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFKQFDKVFPALVAGLPIHMFRTAHNAREKLAESLRHENLQKRESISELISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEVKRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNIRTAKEDFTLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKTKTTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPLDQSRAGLGILPPLNDIEFKYKFKHHH--- 505

Single domain protein: target 7-137, 148-488 ; pdb 24-154, 165-505

T0432 3dai.pdb T0432.pdb PyMOL PyMOL of domains Target page

T0432    1 SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3daiA  979 SMQEEDTFRELRIFLRNVTHRLAIDKRFRVFTKPVDPDEVPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNPDRDPGDRLIRHRACALRDTAYAIIKEELDEDFEQLCEEIQESR 1108

Single domain protein: target 1-130 ; pdb 979-1108

T0433 3d7l.pdb T0433.pdb PyMOL PyMOL of domains Target page

T0433    1 ---MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQTGESYQVY 199
           ~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d7lA   -2 SNAMKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDKGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWDKLEPFFEGFLPVPAAKVARAFEKSVFGAQTGESYQVY 199

Residue change log: change 1, 49, 114, 115, 127, 143, MSE to MET; remove -2-SNA-0 as it is not present in target sequence;

Single domain protein: target 1-199 ; pdb 1-199

T0434 3dal.pdb T0434.pdb PyMOL PyMOL of domains Target page

T0434    1 MGSSHHHHHHSSGLVPRGSKMDMEDADMTLWTEAEFEEKCTYIVNDHPWDSGADGGTSVQAEASLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVPKNANRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTMMNLTQ 205
           ~~~~~~~~~~||||||||||~~~~~|||||||||||||||||||||||||~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dalA  -10 ----------SSGLVPRGSK-----ADMTLWTEAEFEEKCTYIVNDHPWD--------VQAEASLPRNLLFKYATNSEEVIGVMSKEYIPKGTRFGPLIGEIYTNDTVP---NRKYFWRIYSRGELHHFIDGFNEEKSNWMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRDFAERLHYPYPGELTMMNLTQ 186

We suggest to evaluate this target as a single domain spanning whole chain. However, N-terminal (pdb -10 to -1) and C-terminal (179-186) regions protrude away from the structure and were removed in domain evaluation, resulting in this domain definition:

1st domain: target 26-50, 59-109, 113-197 ; pdb 7-31, 40-90, 94-178

T0435 3db5.pdb T0435.pdb PyMOL PyMOL of domains Target page

T0435    1 EHGPVTFVPDTPIESRARLSLPKQLVLRQSIVGAEVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQIGVPE 151
           ~~~||||||||||||||||||||||||||||~~~|||||||||||||||||||||||||~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~
3db5A    4 ---PVTFVPDTPIESRARLSLPKQLVLRQSI---EVGVWTGETIPVRTCFGPLIGQQSH-----------VNHIWKIYHNGVLEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSR---------- 141

Residue change log: change 98, 99, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, the domain is different from the entire chain due to a domain swap of the N-terminal region. Its residue range in PDB is B:4-13, A:14-141. Since no server predicted the swap well, we removed the swapped N-terminal segment (pdb A:4-A:13) for evaluation, resulting this domain definition:

1st domain: target 14-31, 35-59, 71-141 ; pdb 14-31, 35-59, 71-141

T0436 3d6k.pdb T0436.pdb PyMOL PyMOL of domains Target page

T0436    1 MSLKDYDAARLAQVREEVTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAALEV 419
           ~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3d6kA   15 --------------REEVTAKYAELKAKNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFEMINVPMTDEGPDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGSGVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQFFGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSPTGGYFISVDVVPGTASRVVELAKEAGIALTGAGSSFPLHNDPNNENIRLAPSLPPVAELEVAMDGFATCVLMAALEV 419

Residue change log: change 104, 152, 157, 164, 179, 204, 250, 309, 405, 414, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 15-38, 317-419 ; pdb 15-38, 317-419

2nd domain: target 39-316 ; pdb 39-316

T0437 2k3i.pdb T0437.pdb PyMOL PyMOL of domains Target page

T0437    1 --MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA-------- 99
           ~~*******************||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~
2k3iA    1 MAMKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFMTKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLALEHHHHHH 109

Residue change log: remove 1-MA-2, 102-LEHHHHHH-109 as it is not present in target sequence; remove 3-MKDVVDKCSTKGCAIDIGT-21 by 3.5Å SD cutoff;

Single domain protein: target 20-99 ; pdb 22-101

T0438 3d3u.pdb T0438.pdb PyMOL PyMOL of domains Target page

T0438    1 MQWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTLNFLEGNSRPASRDRRVDFIPCHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLPPAGSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQAASESIGYEQFSGSGGQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILKEGACVTTGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRFELEHHHHHH 439
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~
3d3uA    2 -QWQELYRQRVCSADEAVVDSLKPGTKVVFGHAAAAPVRFSQAMYRQREKLENITVFHMLYFGDAPHLAPEMRSHVHPTL--------------------CHFHEVPELFRQGFFPLDVAVVQVSTPNEEGYCSFGVSCDYTKAAAECAPVVVAEVNKQMPFIGGENLIHISKLTHIIEVDEPIAEVLP--GSDLELRIGQNCASLIKDGDTLQLGIGGIPDAVLRALEGHKDLGIHTEMFTDGVMRMIRKGIINGKKKTLHPEKVVTSLIFGSKELYDFVNNNPVIECYPVDYINNPDVIGKNDRMVSINSCLEMDLMGQA--------------GQVDFLRGAKRSKGGISIMAFPSTAKKGTESRIVPILK------TGRNEVDYVVTEYGVARLRGATLRQRAEALTAIAHPDFRPALEEEIRRRF--------- 430

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 2-80, 101-185 ; pdb 2-80, 101-185

2nd domain: target 186-189, 192-322, 337-374, 381-430 ; pdb 186-189, 192-322, 337-374, 381-430

T0440 3dcp.pdb T0440.pdb PyMOL PyMOL of domains Target page

T0440    1 MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYCQK-- 275
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3dcpA    1 MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLSSEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIGFEVDYLIGYEDFTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYLEGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRDYELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYCQKLE 277

Residue change log: change 1, 23, 48, 63, 65, 75, 179, 204, MSE to MET; remove 276-LE-277 as it is not present in target sequence;

Single domain protein: target 1-275 ; pdb 1-275

T0441 3d8u.pdb T0441.pdb PyMOL PyMOL of domains Target page

T0441    1 MSEPRKRRSTGNVTLADVAKQAGVGTMTVSRALRTPELVSDKLREKIQQVVDELGYIPNKAAGALASAESYSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAIKGEPEERPTSMGFKLKRRASTAIN 342
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||~~
3d8uA   71 ----------------------------------------------------------------------YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHSQRTHQLLEASNTPVLEIAELSSKASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQSAMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALVCSHEEIAIGALFECHRRVLKVPTDIAIICLEGSSMGEHAYPSLTSAEFDYERMGTKAAEKLLHAIKGE------SMGFKLKRRASTA-- 340

Residue change log: change 213, 288, 306, 329, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 71-170, 302-321, 328-329 ; pdb 71-170, 302-321, 328-329

2nd domain: target 171-301, 330-340 ; pdb 171-301, 330-340

T0442 3db9.pdb T0442.pdb PyMOL PyMOL of domains Target page

T0442    1 MTIPTSYLNHTDAEAARKARATYRDGLVAPTSGIAPGFTQANMIVLPRDWAFDFLLYAQRNPKPCPVLDVSDPGSPTTLLAPGADLRTDLPLYRIWRDGKLAEETADATSAWAERDDLVAFLIGCSFTFETPMVEAGIEIRHMTDKSNVPMYLTNRPCRPAGRLKGNMVVSMRPIPASRVADAATISGRFPAVHGAPVHVGAPEQIGISDLSKPDFGDAVRIEPGEVPVFWACGVTPQAAVMASGVPFAITHAPGHMFITDIPDTAYHA 269
           ~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~||||||||~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~
3db9A   11 ----------TDAEAARKARATYRDGLVAPTSGIAPGFTQANMIVLPRDWAFDFLLYAQRNPKPCPVLDVSDPGSPTTLLAPGADLRTDLPLYRIWRDGKLAEETADATSAWAERDDLVAFLIG------TPMVEAGI--------SNVPMYLTNRPCRPAGRLKGNMVVSMRPIPASRVADAATISGR-------PVHVGAPEQIGISDLSKPDFGDAVRIEPGEVPVFWACGVTPQAAVMASGVPFAITHAPGHMFITDIPDTA--- 266

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 11-124, 233-266 ; pdb 11-124, 233-266

2nd domain: target 131-138, 147-189, 197-232 ; pdb 131-138, 147-189, 197-232

T0443 3dee.pdb T0443.pdb PyMOL PyMOL of domains Target page

T0443    1 MQPETSAQYQHRFSQAIRGGEAADGLPQDRLNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPYFQEIPGEFLQYCQSPPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRIIIPSLSAISENMEGNSPSQNHLSA 248
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~
3deeA   31 ------------------------------LNVYIRLIRNNIHSFIDRCYTETRQYFDSKEWSRLKEGFVRDARAQTPYFQEIPGEFLQYCQSLPLSDGILALMDFEYTQLLAEVAQIPDIPDIHYSNDSKYTPSPAAFIRQYRYDVTHDLQEAETALLIWRNAEDDVMYQTLDGFDMMLLEIMGSSALSFDTLAQTLVEFMPKADNWKNILLGKWSGWIEQRIIIPSLS------------------ 230

Residue change log: change 94 L to P; change 104, 169, 178, 179, 184, 202, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 31-116 ; pdb 31-116

2nd domain: target 117-230 ; pdb 117-230

T0444 2vux.pdb T0444.pdb PyMOL PyMOL of domains Target page

T0444    1 MHHHHHHSSGVDLGTENLYFQSMSDTNESEIKSNEEPLLRKSSRRFVIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAASDGIVNENLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFMENISLEGKTN 326
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~
2vuxA   30 ---------------------------------NEEPLLRK-----VIFPIQYPDIWKMYKQAQASFWTAEEVDLSKDLPHWNKLKADEKYFISHILAFFAAS------NLVERFSQEVQVPEARCFYGFQILIENVHSEMYSLLIDTYIRDPKKREFLFNAIETMPYVKKKADWALRWIADRKSTFGERVVAFAAVEGVFFSGSFAAIFWLKKRGLMPGLTFSNELISRDEGLHCDFACLMFQYLVNKPSEERVREIIVDAVKIEQEFLTEALPVGLIGMNCILMKQYIEFVADRLLVELGFSKVFQAENPFDFM---------- 312

Single domain protein: target 34-41, 47-103, 110-316 ; pdb 30-37, 43-99, 106-312

T0445 3dao.pdb T0445.pdb PyMOL PyMOL of domains Target page

T0445    1 -MIKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMDEDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEELCTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQEVIAAAKHTCAPYWENGVLSVLKSFL 264
           ~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3daoA    0 GMIKLIATDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHKLLYITDGGTVVRTPKEILKTYPMDEDIWKGMCRMVRDELPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEELCTPVFIPAWNKKAHLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQEVIAAAKHTCAPYWENGVLSVLKSFL 264

Residue change log: change 1, 26, 83, 91, 94, 133, 223, MSE to MET; remove 0 G as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 1-81, 190-264 ; pdb 1-81, 190-264

2nd domain: target 82-189 ; pdb 82-189

T0446 3dcx.pdb T0446.pdb PyMOL PyMOL of domains Target page

T0446    1 MGLLDALMGNAAEVNLDELAQELGPIMGDNEQLALAYRVIRDMFVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTFDMDAELKLWISGQKDPLVKELKKGTDVVGIQKTIANFSL 124
           ~~~~~~~:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dcxA    0 -------GGNAAEVNLDELAQELGPIMGDNEQLALAYRVIRDMFVFTNKRLILIDKQGVTGKKVSYHSVPYKAITHFEVETAGTFDMDAELKLWISGQKDPLVKELKKGTDVVGIQKTIANFSL 124

Residue change log: change 0 G to M; change 27, 43, 87, MSE to MET;

Single domain protein: target 8-124 ; pdb 0-124

T0447 3do6.pdb T0447.pdb PyMOL PyMOL of domains Target page

T0447    1 -MKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGNELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKLSEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAKDVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPGLPKKPNALNMDVDDSGNIVGVS 542
           ~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3do6A    0 GMKPIKEIADQLELKDDILYPYGHYIAKIDHRFLKSLENHEDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNRIGKKSIVTLREPSLGPTLGLKGGATGGGRSRVLPSDEINLHFTGDMHAVASAHNLLAAVLDSHIKHGNELKIDITRVFWKRTMDMNDRALRSIVIGLGGSANGFPREDSFIITAASEVMAILALSENMKDLKERLGKIIVALDADRKIVRISDLGIQGAMAVLLKDAINPNLVQTTEGTPALIHCGPFANIAHGTNSIIATKMAMKLSEYTVTEAGFGADLGAEKFIDFVSRVGGFYPNAAVLVATVRALKYHGGANLKNIHEENLEALKEGFKNLRVHVENLRKFNLPVVVALNRFSTDTEKEIAYVVKECEKLGVRVAVSEVFKKGSEGGVELAKAVAEAAKDVEPAYLYEMNDPVEKKIEILAKEIYRAGRVEFSDTAKNALKFIKKHGFDELPVIVAKTPKSISHDPSLRGAPEGYTFVVSDLFVSAGAGFVVALSGDINLMPGLPKKPNALNMDVDDSGNIVGVS 542

Residue change log: change 1, 68, 118, 155, 157, 191, 200, 232, 275, 277, 426, 518, 530, MSE to MET; remove 0 G as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 3-domain protein:

1st domain: target 1-117, 239-422 ; pdb 1-117, 239-422

2nd domain: target 118-238 ; pdb 118-238

3rd domain: target 423-516 ; pdb 423-516

T0448 3dc7.pdb T0448.pdb PyMOL PyMOL of domains Target page

T0448    1 MIAMIVKGGLAMAISNGHVSFKRPAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSHFLEHHHHHH 232
           ~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3dc7A   18 -----------------HVSFKRPAWLGDSITANNGLATVHYHDILAADWDVERSDNLGISGSTIGSRYDAMAVRYQAIPEDADFIAVFGGVNDYGRDQPLGQYGDCDMTTFYGALMMLLTGLQTNWPTVPKLFISAIHIGSDFGGSFSAVTNGLGYRQSDYEAAIAQMTADYGVPHLSLYRDAGMTFAIPAQAAIYSVDTLHPNNAGHRVIARKLQSFLDSHFLEHHHH-- 230

Residue change log: change 72, 109, 117, 118, 169, 186, MSE to MET;

Single domain protein: target 18-230 ; pdb 18-230

T0449 3dcd.pdb T0449.pdb PyMOL PyMOL of domains Target page

T0449    1 MDYTIENNMIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLGQHGFARNADFEVENHTKESITFLLKDNEETRKVYPFKFEFRVNYNLMNNLLEENFSVVNKSDETMIFGVGGHPGFNLPTDHGENKEDFYFDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRTDKNKFHVNVWTRDAPFVGIWSQYPKTDNYVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMTYHSTTDEVKLEHHHHHH 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~
3dcdA    1 MDYTIENNMIKVVISDHGAEIQSVKSAHTDEEFMWQANPEIWGRHAPVLFPIVGRLKNDEYTYKGKTYHLGQHGFARNADFEVENHTKESITFLLKDNEETRKVYPFKFEFRVNYNLMNNLLEENFSVVNKSDETMIFGVGGHPGFNLPTDHGENKEDFYFDMHPSVTRVRIPLKDASLDWNNRSLAPTDSLIALSDDLFKDDALIYELRGNDNKVSLRTDKNKFHVNVWTRDAPFVGIWSQYPKTDNYVCIEPWWGIADRDDADGDLEHKYGMNHLKPGKEFQAGFSMTYHSTTDEVKL------- 300

Residue change log: change 1, 9, 34, 118, 136, 163, 274, 289, MSE to MET;

Single domain protein: target 1-300 ; pdb 1-300

T0450 3da1.pdb T0450.pdb PyMOL PyMOL of domains Target page

T0450    1 MFSAKKRDKCIGEMSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHGGLRYLKQFEIKLVAEVGKERAIVYENAPHVTTPEWMLLPIFKDGTFGKFSTSLGLKVYDYLADVRKDERRYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPREGKTYIGTTDTFYDKDIASPRMTVEDRDYILAAANYMFPSLNLTADDVESSWAGLRPLIHEEGKKASEISRKDEIFFSDSGLISIAGGKLTGYRKMAERTVDAVAQGLNVNEPCTTAAIRLSGGLAEGAQGFPRFLDEASRKGAKLGFDADEVRRLAKLYGSNVDHVLNYAYEGKEEAEHYGLPALLLGQLQYGVEQEMVATPLDFFVRRTGALFFNISLVHQWKEAVLRWMAEEFSWTEEEKTRFQNELETELKMAVDPLFQVEPTTVLEHHHHHH 561
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~|||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||||~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~
3da1A    1 MFSAKKRDKCIGEMSEKQLDLLVIGGGITGAGIALDAQVRGIQTGLVEMNDFASGTSSRSTKLVHG---------------VGKERAIVYENAPHVTTPEWMLLPIFK---------------------------RYMLNEKQTLEKEPLLRKENLKGGGIYVEYRTDDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVDTLREKDRSKHGKYLKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMIFAIPREGKTYIGTTDTFYDKDIASPRMTVEDRDYILAAANYMFPSLRLTADDVESSWAGLRPLIHE-----------DEIFFSDSGLISIAGGKLTGYRKMAERTVDAVAQGLNVNEPCTTAAIRLSGGLAEGAQGFPRFLDEASRKGAKLGFDADEVRRLAKLYGSNVDHVLNYAYEGKEEAEHYGLPALLLGQLQYGVEQEMVATPLDFFVRRTGALFFNISLVHQWKEAVLRWMAEEFSWTEEEKTRFQNELETELKMAVDPLFQVE------------ 549

Residue change log: change 326 R to N; change 1, 14, 49, 102, 138, 177, 191, 278, 306, 321, 380, 483, 516, 540, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 5-domain protein:

1st domain: target 1-62, 168-247, 343-345, 357-406 ; pdb 1-62, 168-247, 343-345, 357-406

2nd domain: target 63-66, 82-101, 163-167 ; pdb 63-66, 82-101, 163-167

3rd domain: target 102-108, 136-162 ; pdb 102-108, 136-162

4th domain: target 248-342 ; pdb 248-342

5th domain: target 407-549 ; pdb 407-549

T0451 3dmc.pdb T0451.pdb PyMOL PyMOL of domains Target page

T0451    1 -MMTHYSDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVTSNETTVVFEFRDEGLFLGKPYKNRVAVSFDVRGDKICSYREYFGSDGKSN 133
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dmcA    0 GMMTHYSDNTLKVAHQGFEFFTQGLATGEWQKFLDMLTEDFTFWFPMGEFHGLNVGKERAKEFFTYVSESFHTGIQISSLDRVTSNETTVVFEFRDEGLFLGKPYKNRVAVSFDVRGDKICSYREYFGSDGKSN 133

Residue change log: change 1, 2, 35, 46, MSE to MET; remove 0 G as it is not present in target sequence;

Single domain protein: target 1-133 ; pdb 1-133

T0452 3do5.pdb T0452.pdb PyMOL PyMOL of domains Target page

T0452    1 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTRVDGGEGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAGPR 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3do5A    1 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTR----EGVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVRLMYEATVGGAMPVVKLAKRYLALCEIESVKGIFNGTCNYILSRMEEERLPYEHILKEAQELGYAEADPSYDVEGIDAALKLVIIANTIGVKASYEDVEVTGITQITPEAFQVAAEKGYTIRLIAEVSREKLKVSPRLVPFHHPLAIKGTMNAAMFKTDTAGSIFVAGRGAGKEETASAILSDLYEIYAG-- 324

Residue change log: change 1, 58, 64, 126, 137, 146, 179, 285, 289, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 1-90, 95-144, 304-324 ; pdb 1-90, 95-144, 304-324

2nd domain: target 145-303 ; pdb 145-303

T0453 3ded.pdb T0453.pdb PyMOL PyMOL of domains Target page

T0453    1 DGEEDEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDRTRVDKILVQRHH 91
           ~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dedA  341 ----DEIVQREDGSWLVDGMVSLDRFREFFELEAPLPGEAGGNIHTLAGVMLYQLGRVPSVTDRFEWNGFSFEVVDMDRTRVDKILVQRHH 427

Residue change log: change 356, 387, 413, MSE to MET;

Single domain protein: target 5-91 ; pdb 341-427

T0454 3dew.pdb T0454.pdb PyMOL PyMOL of domains Target page

T0454    1 MTRADCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVMTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYFFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMADGGAAPA 203
           ~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~
3dewA    5 ----DCRSRLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFACFGQLDDIRGQAGDPLAVMTAYLRWTIQRHRNNPQLLRFYTSELTNPTPCFAAIVSPAIASVIRLLAESIEAGMTRGLFRRDLHAVNSALALAGMVNYFFLSTLATEGLTSHSPDQDEELIRQYVAIFTRGIMA------- 196

Residue change log: change 11, 41, 81, 136, 157, 195, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 5-56 ; pdb 5-56

2nd domain: target 57-196 ; pdb 57-196

T0455 3ddv.pdb T0455.pdb PyMOL PyMOL of domains Target page

T0455    1 SQNRVPSSRTVSYFVAKPSSSEMEKLQLGPEDSILRMERIRFADDIPICFEVASIPYSLVSQYGKSEITNSFYKTLEAKSGHKIGHSNQTISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK 145
           ~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3ddvA    3 --NRVPSSRTVSYFVAKPSSSEMEKLQLGPEDSILRMERIRFADDIPICFEVASIPYSLV----------------------KIGHSNQTISAVQASEQIAEYLEIKRGDAILRVRQVSYFENGLPFEYVRTQYAGSRFEFYLEK 145

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 3-60 ; pdb 3-60

2nd domain: target 83-145 ; pdb 83-145

T0456 3dfa.pdb T0456.pdb PyMOL PyMOL of domains Target page

T0456    1 MHHHHHHSSGRENLYFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYSSE 286
           ~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~||||||||||||||||||||||||||||||||||||||||||||||||~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3dfaA   -2 --------------YFQGTFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIVGELYTG-ELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILL----KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS-- 267

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 15-104 ; pdb -2-87

2nd domain: target 105-105, 107-154, 159-284 ; pdb 89-89, 90-137, 142-267

T0457 3dev.pdb T0457.pdb PyMOL PyMOL of domains Target page

T0457    1 MVEIFNEIMQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDSVYSDALVIVCDTANAPRIDDQRYLNGQSLIKIDHHPATDQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLFSNTSPHTMEVASQLLAYPFNHNAELNKMSEKDPKLMPFQGYVLQNFELSDSHEYCQIKITNDVLKQFDIQPNEASQFVNTVADISGLKIWMFGVDEGDQIRCRIRSKGITINDVANQFGGGGHPNASGVSVYSWDEFEELAQALRQKLLEHHHHHH 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~
3devA    1 MVEIFNEIMQRVKEAETIIIHRHVRPDPDAYGSQLGLKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDSVYSDALVIVCDTANAPRIDDQRYLNGQSLIKIDHHPATDQYGDVNFVNTEASSTSEIIFDFISHFNDLSIIDEHVARVLYLGIVGDTGRFLFSNTSPHTMEVASQLLAYPFNHNAELNKMSEKDPKLMPFQGYVLQNFELSDSHEYCQIKITNDVLKQFDIQPNEASQFVNTVADISGLKIWMFGVDEGDQIRCRIRSKGITINDVANQFGGGGHPNASGVSVYSWDEFEELAQALRQKLLEHH---- 316

Residue change log: change 1, 9, 172, 192, 200, 255, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 1-194 ; pdb 1-194

2nd domain: target 195-316 ; pdb 195-316

T0458 3dex.pdb T0458.pdb PyMOL PyMOL of domains Target page

T0458    1 MVGAPRMTTPHTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVAPEKSLGHSERLEHHHHHH 107
           ~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~
3dexA   11 ----------HTHRVQIEYCTQCRWLPRAAWLAQELLTTFETELTELALKPGTGGVFVVRVDDEVVWDRREQGFPEPTAVKRLVRDRVA------------------ 89

Single domain protein: target 11-89 ; pdb 11-89

T0459 3df8.pdb T0459.pdb PyMOL PyMOL of domains Target page

T0459    1 SNAMLRYGDTEICIDPSESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMPLLQYISVLDRNGD 111
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3df8A   -2 SNAMLRYGDTEICIDPSESVLHLLGKKYTMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNSLMPLLQYISVLDRN-- 106

Residue change log: change 1, 27, 87, 94, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, due to a domain swap of the N-terminal β-hairpin, the compact domain is different from the entire chain. Its residue range in PDB is B:-2-22, A:23-106. Since no server predicted the swap well, we removed the swapped N-terminal segment (pdb A:-2-A:22) for evaluation, resulting this domain definition:

1st domain: target 26-109 ; pdb 23-106

T0460 2k4n.pdb T0460.pdb PyMOL PyMOL of domains Target page

T0460    1 MNSEVIKEFLEDIGEDYIELENEIHLKPEVFYEVWKYVGEPELKTYVIEDEIVEPGEYDPPEMKYTNVKKVKIKKVYFETLDNVRVVTDYSEFQKILKKRGTKLEHHHHHH 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||**************|||||||||||||||||||||||||||||||||||||********
2k4nA    1 MNSEVIKEFLEDIGEDYIELENEIHLKPEVFYEVWKYVGEPELKTYVIEDEIVEPGEYDPPEMKYTNVKKVKIKKVYFETLDNVRVVTDYSEFQKILKKRGTKLEHHHHHH 111

Residue change log: remove 53-VEPGEYDPPEMKYT-66, 104-LEHHHHHH-111 by 3.5Å SD cutoff;

Single domain protein: target 1-52, 67-103 ; pdb 1-52, 67-103

T0461 3dh1.pdb T0461.pdb PyMOL PyMOL of domains Target page

T0461    1 MHHHHHHSSGVDLGTENLYFQSMEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNAPKSKVRK 189
           ~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~
3dh1A   12 ---------------ENLYFQSMEETEKWMEEAMHMAKEALENTEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTVEPCIMCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQ------------ 173

Single domain protein: target 16-177 ; pdb 12-173

T0462 2k5i.pdb T0462.pdb PyMOL PyMOL of domains Target page

T0462    1 MKLSRLVPGVPARIKRLEVSGELHEKLVGMGFVPGEEIEIVQVAPLGDPIVCKIGNRNITLRKREADLIEVEVVGGELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGRRYYIEGREIDLGYGEATKIWVRRVSDAGEESHPQK-------- 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||********~~~~~~~~
2k5iA    1 MKLSRLVPGVPARIKRLEVSGELHEKLVGMGFVPGEEIEIVQVAPLGDPIVCKIGNRNITLRKREADLIEVEVVGGELPLILADDGTYEITKLNGGRRFLFRMKNLGIESGKKIQVSGRRYYIEGREIDLGYGEATKIWVRRVSDAGEESHPQKLEHHHHHH 162

Residue change log: remove 155-LEHHHHHH-162 as it is not present in target sequence; remove 147-GEESHPQK-154 by 3.5Å SD cutoff;

2-domain protein, both domains used in evaluation:

1st domain: target 1-75 ; pdb 1-75

2nd domain: target 76-146 ; pdb 76-146

T0463 3dhn.pdb T0463.pdb PyMOL PyMOL of domains Target page

T0463    1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTIGY----- 219
           ~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~
3dhnA    3 --KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP------IYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGRYRLGKDDMIVDIVGNSHISVEDYAAAMIDELEHPKHHQERFTIGYLEHHH 224

Residue change log: change 109, 125, 150, 166, 182, 201, MSE to MET; remove 220-LEHHH-224 as it is not present in target sequence;

Single domain protein: target 3-77, 84-219 ; pdb 3-77, 84-219

T0464 2k5r.pdb T0464.pdb PyMOL PyMOL of domains Target page

T0464    1 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIASGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEEAIATIQIANFPDK-------- 89
           ***************||||||||||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||||*~~~~~~~~
2k5rA    1 MDRKLLHLLCSPDTRQPLSLLESKGLEALNKAIVSGTVQRADGSIQNQSLHEALITRDRKQVFRIEDSIPVLLPEEAIATIQIANFPDKLEHHHHHH 97

Residue change log: change 34 V to A; remove 90-LEHHHHHH-97 as it is not present in target sequence; remove 1-MDRKLLHLLCSPDTR-15, 89-K-89 by 3.5Å SD cutoff;

Single domain protein: target 16-88 ; pdb 16-88

T0465 3dfd.pdb T0465.pdb PyMOL PyMOL of domains Target page

T0465    1 MSENQNEKVYDLSFFMPGQTIDAEEVEVPISKRFVDKEGNVVPFIFKAITTDRIDELEKENTTYKNVKGRGRVKELDSQRFYARIAVETTVYPTFKAKELREAYKTEDPVEVAKRVLSVGGEYANWLNKAIEINGFDDDLEDLEEAAKNLEHHHHHH 157
           ~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~
3dfdA    7 ------EKVYDLSFFMPGQTIDAEEVEVPISKRFVDKEGNVVPFIFKAITTDRIDELEKENTT----------KELDSQRFYARIAVETTVYPTFKAKELREAYKTEDPVEVAKRVLSVGGEYANWLNKAIEINGFD-------------------- 137

Residue change log: change 16, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, N-terminal segment (target 1-20, pdb 7-20) forms crystal contacts, but does not interact with its own chain. This segment can be removed for domain-based evaluation, resulting this domain definition:

1st domain: target 21-63, 74-137 ; pdb 21-63, 74-137

T0466 2k5d.pdb T0466.pdb PyMOL PyMOL of domains Target page

T0466    1 MMRLANGIVLDKDTTFGELKFSALRREVRIQNEDGSVSDEIKERTYDLKSKGQGRMIQVSIPASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVLTKDSSSFKAQPQAKKEPTQDK-- 128
           *************||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||********|||||||||||||~~~~~~~~~~~~~~~~~~~~~~
2k5dA    1 MMRLANGIVLDKDTTFGELKFSALRREVRIQNEDGSVSDEIKERTYDLKSKGQGRMIQVSIPASVPLKEFDYNARVELINPIADTVATATYQGADVDWYIKADDIVLT--------------------LE 110

Residue change log: remove 109-LE-110 as it is not present in target sequence; remove 1-MMRLANGIVLDKD-13, 88-TATYQGAD-95 by 3.5Å SD cutoff;

Single domain protein: target 14-87, 96-108 ; pdb 14-87, 96-108

T0467 2k5q.pdb T0467.pdb PyMOL PyMOL of domains Target page

T0467    1 MDLNRMGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDELPAKVKEKLGVK-------- 97
           *******|||||||||||||||||||***|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||***~~~~~~~~
2k5qA    1 MDLNRMGKDEYYVQITVDGKEVHSKADNGQKYKDYEYKLTGFDKDGKEKELEFTAQKNLRKEAFLRVYHSDKKGVSAWEEVKKDELPAKVKEKLGVKLEHHHHHH 105

Residue change log: remove 98-LEHHHHHH-105 as it is not present in target sequence; remove 1-MDLNRMG-7, 27-DNG-29, 95-GVK-97 by 3.5Å SD cutoff;

Single domain protein: target 8-26, 30-94 ; pdb 8-26, 30-94

T0468 2k5w.pdb T0468.pdb PyMOL PyMOL of domains Target page

T0468    1 MERASLNRIGKDVYYMQIKGEGTIEKVDGRNLRNYTLPAYDEDGVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKADLPEKVKDKFTIK-- 109
           **********|||||||||||||||||||||||||||||||||||||||||||||****|||||||||||||||||********|||||||||||||||||||||||||~~
2k5wA    1 MERASLNRIGKDVYYMQIKGEGTIEKVDGRNLRNYTLPAYDEDGVKKQITFRSTKKENDHKLNKYAFLRLYVDQDDNSKNEISSIEVKSYEEIQKADLPEKVKDKFTIKLE 111

Residue change log: remove 110-LE-111 as it is not present in target sequence; remove 1-MERASLNRIG-10, 56-KEND-59, 77-NSKNEISS-84 by 3.5Å SD cutoff;

Single domain protein: target 11-55, 60-76, 85-109 ; pdb 11-55, 60-76, 85-109

T0469 2k5e.pdb T0469.pdb PyMOL PyMOL of domains Target page

T0469    1 MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALA-------- 65
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~
2k5eA    1 MTQKFTKDMTFAQALQTHPGVAGVLRSYNLGCIGCMGAQNESLEQGANAHGLNVEDILRDLNALALEHHHHHH 73

Residue change log: remove 66-LEHHHHHH-73 as it is not present in target sequence;

Single domain protein: target 1-65 ; pdb 1-65

T0470 3djb.pdb T0470.pdb PyMOL PyMOL of domains Target page

T0470    1 MTKQEKIEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANMSYKGGHGGKVESIEGKLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPREVMTKDEYRKNNDPSLNHFYEKLLKLKDLMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQILEHHHHHH 223
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~||||||||||||||||||||||||||||||||||||~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~
3djbA    2 -TKQEKIEKTITFVKHILEKDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVAD--LNESEEAGMKKVSDWLEELHVEEEESKHVLHIIANM-----------SIEGKLVQDADRLDALGAIGIARTFAYGGAKGRLMYDPTIPPR------------DPSLNHFYEKLLKLKDLMNTNAAKQEAEVRHRYMEQFIEQFMKEWNAQ--------- 214

Residue change log: change 36, 53, 73, 100, 146, 184, 200, 208, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein. (Not a very good quality structure with three disordered loops. Domain break is placed in one of those disordered loop of 11 residues long):

1st domain: target 2-62, 65-100 ; pdb 2-62, 65-100

2nd domain: target 112-154, 167-214 ; pdb 112-154, 167-214

T0471 2k4m.pdb T0471.pdb PyMOL PyMOL of domains Target page

T0471    1 --------------------MWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIVTERKMKLVNYGRTYFYEYIAEVRSR 133
           ~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||**
2k4mA    1 MGSSHHHHHHSSGLVPRGSHMWNDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDIVTERKMKLVNYGRTYFYEYIAEVRSR 153

Residue change log: remove 1-MGSSHHHHHHSSGLVPRGSH-20 as it is not present in target sequence; remove 152-SR-153 by 3.5Å SD cutoff;

Single domain protein: target 1-131 ; pdb 21-151

T0472 2k49.pdb T0472.pdb PyMOL PyMOL of domains Target page

T0472    1 MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLT-------- 110
           *|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~
2k49A    1 MSGWYELSKSSNDQFKFVLKAGNGEVILTSELYTGKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAANHQIIGTSQMYSSTAARDNGIKSVMENGKTTTIKDLTLEHHHHHH 118

Residue change log: remove 111-LEHHHHHH-118 as it is not present in target sequence; remove 1 M by 3.5Å SD cutoff;

2-domain protein, both domains used in evaluation:

1st domain: target 2-50, 102-110 ; pdb 2-50, 102-110

2nd domain: target 51-101 ; pdb 51-101

T0473 2k53.pdb T0473.pdb PyMOL PyMOL of domains Target page

T0473    1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKEV-- 68
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
2k53A    1 MKITKDMIIADVLQMDRGTAPIFINNGMHCLGCPSSMGESIEDACAVHGIDADKLVKELNEYFEKKEVLE 70

Single domain protein: target 1-68 ; pdb 1-68

T0474 2k5j.pdb T0474.pdb PyMOL PyMOL of domains Target page

T0474    1 MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW 80
           ******||||||||||||||||||||||||||||||||||||||||||||||****************************
2k5jA    1 MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVDQYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW 80

Residue change log: remove 1-MNSLAG-6, 53-TARTSVPGIWQGCEEDGVEYQRKLREEW-80 by 3.5Å SD cutoff;

Single domain protein: target 7-52 ; pdb 7-52

T0475 2k54.pdb T0475.pdb PyMOL PyMOL of domains Target page

T0475    1 LNSEIELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIERFKEPDLYGELLTRVIVGNVVIDHETVTRNFPEGKGEVDVACIYEVENGRIAKAWFKIGEPRIVSQK- 122
           :|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
2k54A    1 MNSEIELPVQKQLEAYNARDIDAFMAWWADDCQYYAFPATLLAGNAAEIRVRHIERFKEPDLYGELLTRVIVGNVVIDHETVTRNFPEGKGEVDVACIYEVENGRIAKAWFKIGEPRIVSQKS 123

Residue change log: change 1 M to L; remove 123 S as it is not present in target sequence;

Single domain protein: target 1-122 ; pdb 1-122

T0476 2k5c.pdb T0476.pdb PyMOL PyMOL of domains Target page

T0476    1 SAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRREAEKVFELLNDFKGGIDWENKRVKLKLNDLLALETMLEEWDRRVKR 108
           :|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~
2k5cA    8 MAKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEFVFKCPVCGEEFYGKTLPRREAEKVFELLNDFKGGIDWENKRVKLK-------------------- 95

Residue change log: change 8 M to S;

Single domain protein: target 1-88 ; pdb 8-95

T0477 3dkp.pdb T0477.pdb PyMOL PyMOL of domains Target page

T0477    1 SMKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~|||||||||||||||||||||||||||||||||||||||||||||||||
3dkpA  137 SMKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDG--GFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 378

Single domain protein: target 1-191, 194-242 ; pdb 137-327, 330-378

T0478 3d19.pdb T0478.pdb PyMOL PyMOL of domains Target page

T0478    1 MSLDTGVTSVMFVERSLNEIRFWSRIMKEHSFFLRLGFRCEDTQLIEEANQFYRLFEHIEQIAHSYTNETDPEQIKRFNAEVQQAATNIWGFKRKILGLILTCKLPGQNNFPLLVDHTSREADYFRKRLIQLNEGKLDALPDAIIKENVFFLRIMADHAKFIGHLLDPSERKLVDTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIEQCKIKSIIHPLLADHVFREADRFLEIIDMYDVHLTNIQSQPREGHHHHHH 283
           ~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~
3d19A   11 ---DTGVTSVMFVERSLNEIRFWSRIMKEHSFFLRLGFRCEDTQLIEEANQFYRLFEHIEQIAHSYTNETDPEQIKRFNAEVQQAATNIWGFKRKILGLILTCKLPGQNNFPLLVDHTSREADYFRKRLIQLNEGKLDALPDAIIKENVFFLRIMADHAKFIGHLLDPSERKLVDTARNFSNDFDELMYQAIDLESMKPQSQTAPLLDQFLDQNRVSVASLRDFKKTARDLIEQCKIKSIIHPLLADHVFREADRFLEIIDMYDVHL---------------- 274

2-domain protein, both domains used in evaluation:

1st domain: target 4-137 ; pdb 11-144

2nd domain: target 138-267 ; pdb 145-274

T0479 3dkz.pdb T0479.pdb PyMOL PyMOL of domains Target page

T0479    1 MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQRRPG 134
           ~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~
3dkzA   39 -----TDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMNTSFMSPGRGDLVIETRCLRRGASIAFCEGEIRDSAGELVAKATATFKIIQ---- 163

Residue change log: change 49, 87, 112, 117, MSE to MET;

Single domain protein: target 6-130 ; pdb 39-163

T0480 2k4x.pdb T0480.pdb PyMOL PyMOL of domains Target page

T0480    1 MQKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKAKKSKS 55
           ****************||||||||||||||||||||||||||||||||||*****
2k4xA    1 MQKRELYEIADGKLVRKHRFCPRCGPGVFLAEHADRYSCGRCGYTEFKKAKKSKS 55

Residue change log: remove 1-MQKRELYEIADGKLVR-16, 51-KKSKS-55 by 3.5Å SD cutoff;

Single domain protein: target 17-50 ; pdb 17-50

T0481 3dka.pdb T0481.pdb PyMOL PyMOL of domains Target page

T0481    1 MCQSNQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQNKQEETETDLNVLAKTYTEKTVAILEQLTEEQLDREIDLTSAFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM 154
           ~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~|||||||||||||||||||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||
3dkaA    5 ----NQIVSHFLSHRNVTNELAEKISKDHYSYKPAETSMSAEELVKHILTSFHLFANVIKEGNASPFQN----TETDLNVLAKTYTEKTVAILEQLTEEQLDREID---AFGRKVTGRALLQLAMEHEIHHKGNLFVYVREMGHTELPFYQQRM 154

Residue change log: change 39, 125, 142, 154, MSE to MET;

Single domain protein: target 5-69, 74-106, 110-154 ; pdb 5-69, 74-106, 110-154

T0482 2k4v.pdb T0482.pdb PyMOL PyMOL of domains Target page

T0482    1 ---MFEPGHLHLVSLPGLDQQDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHE-- 120
           ~~~||||||||||||****||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||********|||||||||||||||||||*************~~
2k4vA    1 QGHMFEPGHLHLVSLPGLDQQDINIHIRYEVRQNAESGAYVHFDMDGEIDGKPFSDSFELPRDTAFNFASDATRVAQKHGLHPKFGAITRVHKEYDAMFEDIRAKLHAHPGEPVDLERIIRHEGS 125

Residue change log: remove 1-QGH-3, 124-GS-125 as it is not present in target sequence; remove 16-PGLD-19, 84-KFGAITRV-91, 111-GEPVDLERIIRHE-123 by 3.5Å SD cutoff;

Single domain protein: target 1-12, 17-80, 89-107 ; pdb 4-15, 20-83, 92-110

T0483 3dls.pdb T0483.pdb PyMOL PyMOL of domains Target page

T0483    1 MALEEPPKAVELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPVNLADYTWEEVFRVNKPESGVLSAASLEMGNRSLSDVAQAQELCGGEGHHHHHH 335
           ~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3dlsA  982 --------AVELEGLAACEGEYSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQGFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPVNLADYTWEEVF------------------------------------------ 1266

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 9-110 ; pdb 982-1083

2nd domain: target 111-293 ; pdb 1084-1266

T0484 2k5k.pdb T0484.pdb PyMOL PyMOL of domains Target page

T0484    1 MRDMTEETRKDLPPEALRALAEAEERRRRAKALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF 62
           ************||||||||||||||************************************
2k5kA    1 MRDMTEETRKDLPPEALRALAEAEERRRRAKALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF 62

Residue change log: remove 1-MRDMTEETRKDL-12, 27-RRRAKALDLPKEIGGRNGPEPVRFGDWEKKGIAIDF-62 by 3.5Å SD cutoff;

Single domain protein: target 13-26 ; pdb 13-26

T0485 3dlc.pdb T0485.pdb PyMOL PyMOL of domains Target page

T0485    1 -MSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGNCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADADLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVTTAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGVSSYEIILEDEGFWIIISKTDQEVI 218
           ~||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||||||||||||||||:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||:|||||||:||||||||||||||||
3dlcA    0 GMSENKKKFDKKGAKNMDEISKTLFAPIYPIIAENIINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEGFWIIISKTDQEVI 218

Residue change log: change 45 T to N; change 89 N to D; change 127 A to T; change 194 I to V; change 202 G to E; change 1, 16, 77, 162, MSE to MET; remove 0 G as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, N-terminal segment extends away and may be removed, resulting in this domain definition:

1st domain: target 5-216 ; pdb 5-216

T0486 2vx2.pdb T0486.pdb PyMOL PyMOL of domains Target page

T0486    1 MHHHHHHSSGVDLGTENLYFQSMGAGRRESEPRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 287
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2vx2A   45 -------------------------------PRPTSARQLDGIRNIVLSNPKKRNTLSLAMLKSLQSDILHDADSNDLKVIIISAEGPVFSSGHDLKELTEEQGRDYHAEVFQTCSKVMMHIRNHPVPVIAMVNGLATAAGCQLVASCDIAVASDKSSFATPGVNVGLFCSTPGVALARAVPRKVALEMLFTGEPISAQEALLHGLLSKVVPEAELQEETMRIARKIASLSRPVVSLGKATFYKQLPQDLGTAYYLTSQAMVDNLALRDGQEGITAFLQKRKPVWSH 300

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 32-230 ; pdb 45-243

2nd domain: target 231-287 ; pdb 244-300

T0487 3dlb.pdb T0487.pdb PyMOL PyMOL of domains Target page

T0487    1 MNHLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHEEEGSLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLYPASGFAFPRLPAPLHLADRLVKEVGRLGIRHLKEVDREKLFFV 685
           ~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3dlbA    3 --HLGKTEVFLNRFALRPLNPEELRPWRLEVVLDPPPGREEVYPLLAQVARRAGGVTVRMGDGLASWSPPEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWVEGLAVYRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCEMSLEAWLAQGHPLPKRVRNAYDRRTWELLRLGEEDPKELPLPGGLSLLDYHASKGRLQGREGGRVAWVADPKDPRKPIPHLTGLLVPVLTLEDLHE---SLALSLPWEERRRRTREIASWIGRRLGLGTPEAVRAQAYRLSIPKLMGRRAVSKPADALRVGFYRAQETALALLRLDGAQGWPEFLRRALLRAFGASGASLRLHTLHAHPSQGLAFREALRKAKEEGVQAVLVLTPPMAWEDRNRLKALLLREGLPSQILNVPLREEERHRWENALLGLLAKAGLQVVALSGAYPAELAVGFDAGGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVWDLLEETLWAFRRKAGRLPSRVLLLRDGRVPQDEFALALEALAREGIAYDLVSVRKSGGGRVYPVQGRLADGLYVPLEDKTFLLLTVHRDFRGTPRPLKLVHEAGDTPLEALAHQIFHLTRLY------------------------------------------- 642

5-domain protein, all domains used in evaluation:

1st domain: target 3-11, 310-318, 467-642 ; pdb 3-11, 310-318, 467-642

2nd domain: target 12-25, 97-176, 266-272, 276-309 ; pdb 12-25, 97-176, 266-272, 276-309

3rd domain: target 26-96 ; pdb 26-96

4th domain: target 177-265 ; pdb 177-265

5th domain: target 319-466 ; pdb 319-466

T0488 2vwr.pdb T0488.pdb PyMOL PyMOL of domains Target page

T0488    1 SMEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPEIEL 95
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2vwrA   -1 SMEILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVNLTIARPGKPEIEL 428

We suggest to evaluate this target as a single domain spanning whole chain. However, C-terminal segment of this structure protrudes away and interacts with the peptide-binding site of a symmetry mate. This segments (A:424-A:428) can be removed for domain-based evaluation, resulting this domain definition:

1st domain: target 1-90 ; pdb -1-423

T0489 3dl1.pdb T0489.pdb PyMOL PyMOL of domains Target page

T0489    1 MMFKWPWKADDESGNAEMPWEQALAIPVLAHLSSTEQHKLTQMAARFLQQKRLVALQGLELTPLHQARIAMLFCLPVLELGIEWLDGFHEVLIYPAPFIVDDEWEDDIGLVHNQRVVQSGQSWQQGPVVLNWLDIQDSFDASGFNLVVHEVAHKLDTRNGDRASGVPLIPLREVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCHFYRQDPLARRRENGLQDEGDRRIVH 266
           ~~~~~~~~~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~
3dl1A   17 ----------------EMPWEQALAIPVLAHLSSTEQHKLTQMAARFLQQKRLVALQGLELTPLHQARIAMLFCLPVLELGIEWLDGFHEVLIYPAPF-------------------------QQGPVVLNWLDIQDSFDASGFNLVVHEVAHKLDTR--DRASGVPLIPLREVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSEYFFSAPELFAPRFPALWQRFCHFYRQDPLARRRE------------- 253

Residue change log: change 18, 43, 71, 185, MSE to MET;

Single domain protein: target 17-98, 124-158, 161-253 ; pdb 17-98, 124-158, 161-253

T0490 3dme.pdb T0490.pdb PyMOL PyMOL of domains Target page

T0490    1 MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGRAPFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLAA 369
           ~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3dmeA    3 --TDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGRAPFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLA- 368

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 4-domain protein:

1st domain: target 3-49, 148-228, 318-368 ; pdb 3-49, 148-228, 318-368

2nd domain: target 50-88, 143-147 ; pdb 50-88, 143-147

3rd domain: target 89-142 ; pdb 89-142

4th domain: target 229-317 ; pdb 229-317

T0491 3dm4.pdb T0491.pdb PyMOL PyMOL of domains Target page

T0491    1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPLVGLEHHHHHH 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~
3dm4A    1 MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAG----------------- 98

Residue change log: change 1, 16, 70, MSE to MET;

Single domain protein: target 1-98 ; pdb 1-98

T0492 2k5l.pdb T0492.pdb PyMOL PyMOL of domains Target page

T0492    1 MFSLRDAKCGQTVKVVKLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDPIQINVRGYELSLRKSAAEMIEVE-------- 73
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~
2k5lA    1 MFSLRDAKCGQTVKVVKLHGTGALKRRIMDMGITRGCEIYIRKVAPLGDPIQINVRGYELSLRKSAAEMIEVELEHHHHHH 81

Residue change log: remove 74-LEHHHHHH-81 as it is not present in target sequence;

Single domain protein: target 1-73 ; pdb 1-73

T0493 3dmn.pdb T0493.pdb PyMOL PyMOL of domains Target page

T0493    1 SNASYRSTQQITDFTKEILVNGEAVTAFDRQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQRLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTLVAVGSLSPLLARVNHALYTLNEAK 174
           ~~|||||||||||||||||||~~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3dmnA  596 --ASYRSTQQITDFTKEILVN--------RQGDLPNVVVTPNFEAGVDQVVDQLAMNDSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTEN-RLAPGVIVVPSFLAKGLEFDAVIVWNANQENYQREDERQLLYTICSRAMHELTLVAVGSLSPLLARVNHALYTLNE-- 765

Residue change log: change 649, 738, MSE to MET;

Single domain protein: target 3-21, 30-95, 97-172 ; pdb 596-614, 623-688, 690-765

T0494 2vx3.pdb T0494.pdb PyMOL PyMOL of domains Target page

T0494    1 MHHHHHHSSGVDLGTENLYFQSMSSHKKERKVYNDGYDDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTADE 382
           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~
2vx3A  135 -------------------------------VYNDGYDDDNYDYIVKNGEKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYNLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKK---- 481

Residue change log: change 321 PTR to TYR;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 32-137 ; pdb 135-240

2nd domain: target 138-378 ; pdb 241-481

T0495 3dnx.pdb T0495.pdb PyMOL PyMOL of domains Target page

T0495    1 MPMTLDLQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVMGLGPKGEIWVIECKSSRADFQADAKWQGYLEWCDRYFWAVDMEFPAELLPAESGLLIADAYDAEIVRMAPEQKLAPARRKVLIQKFATHAARRLQALRDPEGHGIFE 150
           ~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dnxA    5 ----LDLQPGQRLARGVARHLRAHGFVSVEEFVPARGLRVDVMGLGPKGEIWVIECKSSRADFQADAKWQGYLEWCDRYFWAVDMEFPAELLPAESGLLIADAYDAEIVRMAPEQKLAPARRKVLIQKFATHAARRLQALRDPEGHGIFE 150

Residue change log: change 43, 85, 111, MSE to MET;

Single domain protein: target 5-150 ; pdb 5-150

T0496 3do9.pdb T0496.pdb PyMOL PyMOL of domains Target page

T0496    1 MNTPVSVNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQLMHKVHFVEHAKYCPRGLVMSANCVKDTPFHFFKQNVMTTDAEKSFHDIRLNRDEDIYIQLNFKSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTAELKML---- 178
           ~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~
3do9A    4 ---PVSVNEKKDFVKWFLNNYQLKQRECVWILNYLMSHDQLMHKVHFVEHAKYCPRGLVMSANCVKDTPFHFFKQNVMTTDAEKSFHDIRLNRDEDIYIQLNFKSSFQNANYVAVLEENPYLPKHIEVNEKDRLLAERFLEESVFSFRRERLLKQIDEALDKQDKEAFHRLTAELKMLEGHH 182

2-domain protein, both domains used in evaluation:

1st domain: target 4-126 ; pdb 4-126

2nd domain: target 127-178 ; pdb 127-178

T0497 3dmb.pdb T0497.pdb PyMOL PyMOL of domains Target page

T0497    1 -MADPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLGV 146
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3dmbA    0 GMADPKELQDKFWKALKSDRTVMLGLDGVEDGHARPMTAQIEGDSGGPIWFFTSKDNALIAMLGQGRRVIGAFSSKGHDLFASISGSLREDTDPAVVDRLWNPYVAAWYEGGKDDPKLALLRLDADHAQIWLNGSSLLAGIKVLLG- 145

Residue change log: change 1, 22, 36, 61, MSE to MET; remove 0 G as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, the C-terminal strand in swapped with a crystallographic symmetry mate of the chain C. The domain residue range thus is joint between the two chains, and in PDB it is A:0-133, C:134-145. Since no server predicted the swap well, we removed the swapped C-terminal segment (A:134-A:145) for evaluation, resulting in this domain definition:

1st domain: target 1-133 ; pdb 1-133

T0498 2jws.pdb T0498.pdb PyMOL PyMOL of domains Target page

T0498    1 TTYKLILNLKQAKEEAIKELVDAGTAEKYIKLIANAKTVEGVWTLKDEIKTFTVTE 56
           ******||||||||||||||||||:||||||||||||||||||||||||:||||**
2jwsA    1 TTYKLILNLKQAKEEAIKELVDAGIAEKYIKLIANAKTVEGVWTLKDEILTFTVTE 56

Residue change log: change 25 I to T; change 50 L to K; remove 1-TTYKLI-6, 55-TE-56 by 3.5Å SD cutoff;

Single domain protein: target 7-54 ; pdb 7-54

T0499 2jwu.pdb T0499.pdb PyMOL PyMOL of domains Target page

T0499    1 TTYKLILNLKQAKEEAIKEAVDAGTAEKYFKLIANAKTVEGVWTYKDEIKTFTVTE 56
           |||||||||||||||||||:|||:||||||||:|||||||||||||||:|||||||
2jwuA    1 TTYKLILNLKQAKEEAIKELVDAATAEKYFKLYANAKTVEGVWTYKDETKTFTVTE 56

Residue change log: change 20 L to A; change 24 A to G; change 33 Y to I; change 49 T to I;

Single domain protein: target 1-56 ; pdb 1-56

T0501 3dma.pdb T0501.pdb PyMOL PyMOL of domains Target page

T0501    1 MLTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTEKKMIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE 343
           ~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dmaA    2 -LTKVIAQAHIDHFTKWFERADKIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFADKLIMEADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRITISHPEISSTSELVFRLICRMGYFSDISKEGAECIYTGMMTDTGGFTYNSNNREIYFIISELLSKGIDKDDIYRKVYNTYSESRLRLMGYVLSNMKVYKDYNSALISLTKEEQGKFDYIKGDSEGFVNIPLSIKNVCFSCFLREDTE--MIKISLRSVGKFPCNRLAAEFFNGGGHLNASGGEFYGTMEEAVKVFEQALEKYKPLLKE 343

Residue change log: change 69, 90, 109, 122, 156, 174, 175, 223, 230, 285, 323, MSE to MET;

2-domain protein, both domains used in evaluation:

1st domain: target 2-214 ; pdb 2-214

2nd domain: target 215-282, 285-343 ; pdb 215-282, 285-343

T0502 3dm3.pdb T0502.pdb PyMOL PyMOL of domains Target page

T0502    1 EIKDTYNIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIREGYYGGLECTANYVEILKKGEKIES 105
           ~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~
3dm3A    4 ---DTYNIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRVRGYIREGYYGGLECTANYVEILKKGE---- 101

Single domain protein: target 4-101 ; pdb 4-101

T0503 3dn7.pdb T0503.pdb PyMOL PyMOL of domains Target page

T0503    1 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMYSKEEQYHNFSSRFPEFIQRVPQYLLASYLGFTPEYLSEIRKKYIS 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
3dn7A    1 MHTALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQKSFAAAQLRSKFQHMY--------------------------------------------- 146

Residue change log: change 1, 83, 145, MSE to MET;

Single domain protein: target 1-146 ; pdb 1-146

T0504 3dlm.pdb T0504.pdb PyMOL PyMOL of domains Target page

T0504    1 ENLYFQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEP 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dlmA    1 ENLYFQGDLIVSMRILGKKRTKTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYDYHPPADKLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVRILFLDDKRCEWIYRGSTRLEP 208

3-domain protein, all domains used in evaluation:

1st domain: target 1-61 ; pdb 1-61

2nd domain: target 62-152 ; pdb 62-152

3rd domain: target 153-208 ; pdb 153-208

T0505 3dnp.pdb T0505.pdb PyMOL PyMOL of domains Target page

T0505    1 SNAMSKQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTRSNDEQGVAYMMKEYFRMQQRKGFLDKFHMKR 290
           ~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~~
3dnpA    3 -----KQLLALNIDGALLRSNGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLDAKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQVLESYQCNIRLLHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETITKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPEIKRKADWVTRSNDEQGVAYMMKEYFRMQQRK---------- 277

Residue change log: change 149, 215, 230, 240, 266, 267, 273, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 6-85, 200-280 ; pdb 3-82, 197-277

2nd domain: target 86-199 ; pdb 83-196

T0506 3dnh.pdb T0506.pdb PyMOL PyMOL of domains Target page

T0506    1 MLDVAPPVITPRGTKIEPSAGAPFEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQINGGPARNASNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 254
           ~~~|||||||||~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3dnhA    4 ---VAPPVITPR-----------FEAVRVARDVLHTSRTAALATLDPVSGYPYTTATNIGIEPDGTPFFFAAGLTLHARNMETDARISVTLAPFGKGDALTLPRLTLVGRADRIGPDEVPLAIARYIARYPKAKLYLSLPDTRLYRLRTEGVQING------SNITPADLRTDLSGAEELMAAAESEATRLNAIKGEASRLAVLAGAKTGRWKITSIDPDGIDLASASDLARLWFAERVETLKQFEKALAQLLK 254

Residue change log: change 81, 181, MSE to MET;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 4-12, 24-156, 163-173 ; pdb 4-12, 24-156, 163-173

2nd domain: target 174-254 ; pdb 174-254

T0507 3do8.pdb T0507.pdb PyMOL PyMOL of domains Target page

T0507    1 MKVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPETYEMALKINQKREELGKRKITIVKVDWMMAEDGKPISSTRIKRGEIDRYGGII 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~|||||||||||~~~~~~
3do8A    1 MKVALGGTFEPLHEGHKKLIDVAIKLGGRDITIGVTSDRMARARIRSVLPFAIRAENVKRYVMRKYGFEPEIVKITNPYGKTLDVDFEYLVVSPETYEMALKINQKREELGKRKITIVKVDWMM-------SSTRIKRGEID------ 142

Single domain protein: target 1-124, 132-142 ; pdb 1-124, 132-142

T0508 3dou.pdb T0508.pdb PyMOL PyMOL of domains Target page

T0508    1 MTGDRRDEYYWKAKKEQLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKPPASRGSSSEIYIMFFGFKAP 197
           ~~~~~~~~~~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~|||||||||||||:
3douA   17 ----------------QLRSRAAFKLEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEEIAGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKNFSSYKISKP------SSEIYIMFFGFKAE 197

Residue change log: change 197 E to P; change 71, 113, 135, 157, 190, MSE to MET;

Single domain protein: target 17-177, 184-197 ; pdb 17-177, 184-197

T0509 3dr5.pdb T0509.pdb PyMOL PyMOL of domains Target page

T0509    1 MSNAFEYLRTYVESTTETDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKA----- 213
           ~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~
3dr5A    3 --NAFEYLRTYVESTTETDAAVARAREDAAEFGLPAPDEMTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQVSPMDLKALVDAAWPLLRRGGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPLGAGLTVVTKALEHHH 218

Residue change log: change 40, 122, 140, MSE to MET; remove 214-LEHHH-218 as it is not present in target sequence;

Single domain protein: target 3-213 ; pdb 3-213

T0510 3doa.pdb T0510.pdb PyMOL PyMOL of domains Target page

T0510    1 MAYDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVVRQNRQNHQLLLSIHPNFSRLQLTTKKYDNPFNPPMFARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTPNTNHYRTVMPGFNYEAPPTQHKINPYDITGAEVLKYIDFNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTSSTLPEAFDEVMAETKLPPTPIFHKNHETGKEDFYFIKLNQFNDDTVTYDSLNDLLDRFYDARGERERVKQ 288
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~|||||||||||||||||||||||||||||||||||||~~~~~~~~~
3doaA    1 MAYDGLFTKKMVESLQFLTTGRVHKINQPDNDTILMVVRQNRQNHQLLLSIHPNFSRLQLTTK-------PPMFARVFRKHLEGGIIESIKQIGNDRRIEIDIKSKDEIGDTIYRTVILEIMGKHSNLILVDENRKIIEGFKHLTP-----RTVMPGFNYEAPPTQHKINPYDITGAEVLKYIDFNAGNIAKQLLNQFEGFSPLITNEIVSRRQFMTSSTLPEAFDEVMAETKLPPTPIFH-NHETGKEDFYFIKLNQFNDDTVTYDSLNDLLDRFYDA--------- 279

3-domain protein, all domains used in evaluation:

1st domain: target 1-63, 71-146, 152-165 ; pdb 1-63, 71-146, 152-165

2nd domain: target 166-235 ; pdb 166-235

3rd domain: target 236-241, 243-279 ; pdb 236-241, 243-279

T0511 3e03.pdb T0511.pdb PyMOL PyMOL of domains Target page

T0511    1 -MTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATDAINMLPGVDAAACRRPEIMADAAHAVLTREAAGFHGQFLIDDEVLAQAGITDLSGYAVDPQRALLPDLFLE-- 271
           ~:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~
3e03A    2 SLTLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIAT-------GVDAAACRRPEIMADAAHAVLTREAAGFHGQFLIDDEVLAQAGITDLSGYAVDPQRALLPDLFLEEG 275

Residue change log: change 3 L to M; change 112, 118, 170, 172, 221, MSE to MET; remove 2-S-2, 274-EG-275 as it is not present in target sequence;

Single domain protein: target 1-199, 207-271 ; pdb 3-201, 209-273

T0512 3dsm.pdb T0512.pdb PyMOL PyMOL of domains Target page

T0512    1 ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHHH 328
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3dsmA   15 ASGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINNDIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLIDEFYVGIIPGAFCWKLEHHHHH- 341

Residue change log: change 63, 140, 142, 150, 193, 199, 263, MSE to MET;

Single domain protein: target 1-327 ; pdb 15-341

T0513 3dup.pdb T0513.pdb PyMOL PyMOL of domains Target page

T0513    1 -MSFLKHVQDCNTHDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRDAVLLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLRGRPRERAASPA 292
           ~:||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~~~~~~~~~
3dupA    0 SLSFLKHVQDCNTHDLSNFVRFVIEGRRVGWVRKALAQRLKAHGRVFDVTRDAVLLSASLRTPQSRTRAVADVVDRLADEGVVPAPRGELYRVNQSWGEPTLMLLDRAVVPTFGVRAYGVHLNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEALARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEAVRTTEAFKFNVNLTVIDFAIRHGLIDPDNEPDYQEILAGLRGR--------- 283

Residue change log: change 1 L to M; change 102, 152, 195, 226, 230, MSE to MET; remove 0 S as it is not present in target sequence;

We suggest to evaluate this target as a single domain spanning whole chain. However, evolutionarily this is a 2-domain protein:

1st domain: target 1-15, 115-283 ; pdb 1-15, 115-283

2nd domain: target 16-114 ; pdb 16-114

T0514 3dtd.pdb T0514.pdb PyMOL PyMOL of domains Target page

T0514    1 SSLTETYGLWSINCGIQEGKKVCFMHRQEVNDQNRVVVAMSVVLNADGVVSGNLTVPFGILVSKPVRLQVDEGKAVIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIALQK- 145
           ~||||||||||||||||~~~|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||~
3dtdA   42 -SLTETYGLWSINCGIQ---KVCFMHRQEVNDQNRVVVAMSVVLNADGVVSGNLTVPFGILVSKPVRLQVDEGKAVIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIALQKE 186

Single domain protein: target 2-17, 21-145 ; pdb 42-57, 61-185