Citrus Sinensis ID: 047897

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
Protein Sequence
YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHcccEEEEEEcccHHHHHHHHHccccccccEEEEEccccccccccccEEEEcccccccHHHHHHHccccccccEEEEEEHHHHHHHHccccccccccHHHHHHHHHcccEEEEEEccccccccccccEEEEEEEEccccccccHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHcHHcccHHcccHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHcccEEEEEEcHHHHHHHHHHHccccccccEEEEEccEEEEcccccEEEEEcccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEEEEEEEcccccccccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccc
Coil and Loop (DISEMBL)
yiffhkskgqhiltNQRVLDSIVrkssinpddtvleigpgtgnlTLKLLEVSKKVHAIEIDERMVEILNRRaadsgfhdrlnviskdalktefpqfdlvvanipygisspLVAKLVYGTKSFRSATLLLQKEFARRllaspgdsefnRLAVNVKLVADVEFVMdvskrdflpcpkvdssvviirpkaeipdvnldEWRAFTRTCFSkknktlgatFKQKKKVIELLRLSKQK
Flexible Loop (DISEMBL)
yiffhkskgqhiltnqRVLDSIVRKssinpddtvleigpgtgnltLKLLEVSKKVHAIEIDERMVEILNRraadsgfhdrLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLaspgdsefnrlAVNVKLVADVEFVMDvskrdflpcpkvdssvviirpkaeipdvnldeWRAFTRTCFskknktlgatfkqkkkviellrlskqk
Low Complexity Region (SEG)
YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQK
Disordered region (IsUnstruct)
***F****GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL******
Disordered Region (DISOPRED)
*IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVI**LRLS***
Disordered Region (DISEMBL)
YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQK
Disordered Region (DISPRO)
YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRL****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	232	2.2.26 [Sep-21-2011]
Q09522	308	Probable dimethyladenosin	yes	no	0.956	0.720	0.511	1e-57
Q9VAQ5	306	Probable dimethyladenosin	yes	no	0.965	0.732	0.488	2e-55
Q9UNQ2	313	Probable dimethyladenosin	yes	no	0.931	0.690	0.490	1e-54
Q9D0D4	313	Probable dimethyladenosin	yes	no	0.931	0.690	0.486	2e-54
Q2KHT8	313	Probable dimethyladenosin	yes	no	0.931	0.690	0.486	2e-54
Q95KJ0	313	Probable dimethyladenosin	N/A	no	0.931	0.690	0.486	8e-54
Q54QK7	314	Probable dimethyladenosin	yes	no	0.956	0.707	0.520	3e-53
Q6BSY5	327	Dimethyladenosine transfe	yes	no	0.922	0.654	0.476	4e-52
Q6C7H6	317	Dimethyladenosine transfe	yes	no	0.900	0.659	0.492	5e-52
P78697	320	Dimethyladenosine transfe	yes	no	0.956	0.693	0.475	1e-51

>sp|Q09522|DIM1_CAEEL Probable dimethyladenosine transferase OS=Caenorhabditis elegans GN=E02H1.1 PE=3 SV=2

 Score =  223 bits (567), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/223 (51%), Positives = 151/223 (67%), Gaps = 1/223 (0%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           F+  KGQHIL N  V+++IV KS++   DTVLE+GPGTGNLT+K+LEV+K V A EID R
Sbjct: 24  FNTDKGQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVAKTVIACEIDPR 83

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
           M+  + +R   +   ++L V   D +K E+P FD+ VAN+PY ISSP V KL+      R
Sbjct: 84  MIAEVKKRVMGTPLQNKLQVNGGDVMKMEWPFFDVCVANLPYQISSPFVQKLLLHRPLPR 143

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
            A L+ QKEFA RL+A PGD +++RL+VNV+L+A VE +M V + +F P PKVDS+VV I
Sbjct: 144 YAVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDSAVVRI 203

Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
            PK   P VN  EW    R CF +KNKTL A F+    VIE++
Sbjct: 204 APKNPPPPVNFVEWEGLLRLCFMRKNKTLMAIFRL-SNVIEVI 245

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8EC: 3

>sp|Q9VAQ5|DIM1_DROME Probable dimethyladenosine transferase OS=Drosophila melanogaster GN=CG11837 PE=2 SV=1

 Score =  215 bits (548), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 110/225 (48%), Positives = 148/225 (65%), Gaps = 1/225 (0%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           I F+K  GQHIL N  V+ +++ K+++   D VLEIGPGTGN+T+++LE +KKV A EID
Sbjct: 21  IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEID 80

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            R+   L +R   +    +L V+  D LK E P FDL +AN+PY ISSPL+ KL+     
Sbjct: 81  TRLAAELQKRVQATPLQPKLQVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPL 140

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 141 FRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV 200

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
            + PK   P VN  EW   TR  F +KNKTL ATFK    V+E+L
Sbjct: 201 RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKV-TSVLEML 244

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q9UNQ2|DIM1_HUMAN Probable dimethyladenosine transferase OS=Homo sapiens GN=DIMT1 PE=1 SV=1

 Score =  213 bits (541), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 106/216 (49%), Positives = 143/216 (66%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28  LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            R+V  L++R   +    +L V+  D LKT+ P FD  VAN+PY ISSP V KL+     
Sbjct: 88  PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPF 147

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            I PK   P +N  EW    R  F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q9D0D4|DIM1_MOUSE Probable dimethyladenosine transferase OS=Mus musculus GN=Dimt1 PE=2 SV=1

 Score =  212 bits (539), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 143/216 (66%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28  LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            R+V  L++R   +    +L V+  D LK++ P FD  VAN+PY ISSP V KL+     
Sbjct: 88  PRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFFDACVANLPYQISSPFVFKLLLHRPF 147

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            I PK   P +N  EW    R  F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q2KHT8|DIM1_BOVIN Probable dimethyladenosine transferase OS=Bos taurus GN=DIMT1 PE=2 SV=1

 Score =  211 bits (538), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 142/216 (65%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28  LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVIACELD 87

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            R+V  L++R   +    +L V+  D LK + P FD  VAN+PY ISSP V KL+     
Sbjct: 88  PRLVAELHKRVQGTPLASKLQVMVGDVLKADLPFFDACVANLPYQISSPFVFKLLLHRPF 147

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAVLMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            I PK   P +N  EW    R  F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q95KJ0|DIM1_MACFA Probable dimethyladenosine transferase OS=Macaca fascicularis GN=DIMT1 PE=2 SV=1

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 105/216 (48%), Positives = 141/216 (65%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct: 28  LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            R+V  L +R   +    +L V+  D LKT+ P FD  VAN+PY ISSP V KL+     
Sbjct: 88  PRLVAELRKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPF 147

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FR A L+ Q+E A RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct: 148 FRCAILMFQRELALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            I PK   P +N  EW    R  F +KNKTL A FK
Sbjct: 208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFK 243

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q54QK7|DIM1_DICDI Probable dimethyladenosine transferase OS=Dictyostelium discoideum GN=dimt1 PE=3 SV=1

 Score =  208 bits (529), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 116/223 (52%), Positives = 146/223 (65%), Gaps = 1/223 (0%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
            +KS GQH+L N  ++D+IV KS +   DTVLEIGPGTGNLT+KLLE  KKV AIE+D R
Sbjct: 29  MNKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPR 88

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
           M   L +R A S +   L +I  D LK + P FD+ VAN+PY ISSPL  KL+     FR
Sbjct: 89  MAAELQKRVAASPYAQHLQIILGDFLKVDLPYFDVCVANVPYQISSPLTFKLLAHRPIFR 148

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
           +A L+ QKEFA RL A PGDS + RL+VN +L++ V  +M V K +FLP PKV+S+VV I
Sbjct: 149 TAVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVGKNNFLPPPKVESAVVRI 208

Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
            P    P +N  EW    + CFS+KNKTL   F+    VIE L
Sbjct: 209 EPFNPPPPINFVEWDGLVKLCFSRKNKTLSGIFRV-SSVIETL 250

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q6BSY5|DIM1_DEBHA Dimethyladenosine transferase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DIM1 PE=3 SV=1

 Score =  204 bits (519), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 102/214 (47%), Positives = 142/214 (66%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           F+ + GQHIL N  V   IV K+ I P D VLE+GPGTGNLT+++LE ++KV A E+D R
Sbjct: 32  FNTNLGQHILKNPLVAQGIVDKAGIKPSDIVLEVGPGTGNLTVRILEQARKVIASEMDPR 91

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
           M   L +R   +    +L+++  D +KTE P FD+ ++N PY ISSPLV KL+   +  R
Sbjct: 92  MAAELTKRVHGTPNQKKLDILLGDFIKTELPYFDVCISNTPYQISSPLVFKLLNQPRPPR 151

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
            + L+ Q+EFA RLLA PGDS + RL+ NV++ A+V  +M VSK +F P P+V+SSVV I
Sbjct: 152 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVSKNNFRPPPQVESSVVRI 211

Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
             K   P+++ +EW    R CF +KNKT+ A FK
Sbjct: 212 EVKVPRPNIDFNEWDGLLRICFVRKNKTIAAGFK 245

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|Q6C7H6|DIM1_YARLI Dimethyladenosine transferase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=DIM1 PE=3 SV=1

 Score =  204 bits (518), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 103/209 (49%), Positives = 135/209 (64%)

Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
           GQHIL N  V   IV KS I P DTVLE+GPGTGNLT+++LE ++KV A+E+D RM   L
Sbjct: 35  GQHILKNPLVAQGIVDKSDIKPSDTVLEVGPGTGNLTVRILEKARKVIAVEMDPRMAAEL 94

Query: 69  NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
            +R        +L ++  D +KTE P FD+ ++N PY ISSPLV KL+   +  R + L+
Sbjct: 95  TKRVQGKPEQKKLEIMLGDCIKTELPYFDVCISNTPYQISSPLVFKLLNQPRPPRVSVLM 154

Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
            Q EFA RLLA PGDS + RL+VNV++ A V  VM V + +F P P V+SSVV I  K  
Sbjct: 155 FQHEFAMRLLARPGDSLYCRLSVNVQMWAKVSHVMKVGRGNFRPPPNVESSVVKIEVKNP 214

Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            P ++ +EW    R CF +KNKT+ A FK
Sbjct: 215 RPPIDFNEWDGLLRVCFVRKNKTINAGFK 243

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

>sp|P78697|DIM1_KLULA Dimethyladenosine transferase OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=DIM1 PE=3 SV=3

 Score =  203 bits (516), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 106/223 (47%), Positives = 142/223 (63%), Gaps = 1/223 (0%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           F+   GQHIL N  V   IV K+ I P D VLEIGPGTGNLT+++LE ++KV A+E D R
Sbjct: 31  FNTDLGQHILKNPLVAQGIVDKAQIKPSDIVLEIGPGTGNLTVRILEQARKVVAVEFDPR 90

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
           M   L +R   +    +L ++  D +KTE P FD+ ++N PY ISSPLV KL+   K  R
Sbjct: 91  MAAELTKRVHGTPVEKKLEILLGDFMKTELPYFDVCISNTPYQISSPLVFKLINQPKPPR 150

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
            + L+ Q+EFA RLLA PGDS + RL+ NV++ A+V  +M V K +F P PKV+SSVV I
Sbjct: 151 VSILMFQREFAMRLLARPGDSLYCRLSANVQMWANVTHIMKVGKNNFRPPPKVESSVVRI 210

Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
             K   P V+ +EW    R  F +KN+T+ A FK    V+E+L
Sbjct: 211 EIKNPRPQVDFNEWDGLLRIVFVRKNRTIAAGFKS-TTVLEIL 252

Specifically dimethylates two adjacent adenosines in the loop of a conserved hairpin near the 3'-end of 18S rRNA in the 40S particle.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
224143306	386	predicted protein [Populus trichocarpa]	0.987	0.593	0.825	1e-105
449491400	352	PREDICTED: probable dimethyladenosine tr	0.978	0.644	0.792	1e-103
449464528	352	PREDICTED: probable dimethyladenosine tr	0.978	0.644	0.788	1e-103
297735070	383	unnamed protein product [Vitis vinifera]	0.987	0.597	0.794	1e-102
147794654	383	hypothetical protein VITISV_007907 [Viti	0.982	0.595	0.798	1e-101
255560978	366	dimethyladenosine transferase, putative	0.978	0.620	0.775	1e-100
357483617	332	Dimethyladenosine transferase-like prote	0.982	0.686	0.780	3e-99
78499686	310	hypothetical protein [Eutrema halophilum	0.982	0.735	0.75	8e-97
297797749	376	ribosomal RNA adenine dimethylase family	0.982	0.606	0.745	7e-95
42573814	380	Ribosomal RNA adenine dimethylase family	0.982	0.6	0.745	8e-95

>gi|224143306|ref|XP_002324910.1| predicted protein [Populus trichocarpa] gi|222866344|gb|EEF03475.1| predicted protein [Populus trichocarpa]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/229 (82%), Positives = 206/229 (89%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +F +KSKGQH+LTNQR+LDSIVRKSSINP DTVLEIGPGTGNLTLKLL+V+ KV A+EID
Sbjct: 54  LFLYKSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKLLDVASKVVAVEID 113

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
           +RMV +LN+R  + GF D+L+VI +DALK EFP+FDLVVANIPYGISSPLVAKLVYG   
Sbjct: 114 KRMVGVLNKRVKEHGFEDKLSVIREDALKAEFPKFDLVVANIPYGISSPLVAKLVYGANP 173

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRSATLLLQKEFARRLLA PGDSEFNRLAVNVKLVADVEFVM+VSKRDF P PKVDSSVV
Sbjct: 174 FRSATLLLQKEFARRLLAKPGDSEFNRLAVNVKLVADVEFVMNVSKRDFFPVPKVDSSVV 233

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSK 230
           IIRPK  IPDVNLDEW AFT+ CF KKNKTLGATFKQKKKVIEL RLSK
Sbjct: 234 IIRPKDRIPDVNLDEWWAFTKNCFGKKNKTLGATFKQKKKVIELFRLSK 282

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491400|ref|XP_004158885.1| PREDICTED: probable dimethyladenosine transferase-like [Cucumis sativus]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/227 (79%), Positives = 206/227 (90%)

Query: 1   YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
           +++F+KS+GQHILTNQR+LDSIVRKS+I P DTVLEIGPGTGNLTLKLLE S+KV A+EI
Sbjct: 53  HLYFYKSRGQHILTNQRILDSIVRKSAILPTDTVLEIGPGTGNLTLKLLEASQKVIAVEI 112

Query: 61  DERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTK 120
           D+RMVE+L++R A+    DR+ VI +DALK EFP FDLVVANIPYGISSPLVAKLVYGT 
Sbjct: 113 DKRMVEVLHKRVAEHQLEDRICVICQDALKCEFPHFDLVVANIPYGISSPLVAKLVYGTI 172

Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
            FRSATLLLQKEFARRLLA PGDSE+NRLAVNVKLVADVE VMDVSKRDF+PCPKVDSSV
Sbjct: 173 PFRSATLLLQKEFARRLLADPGDSEYNRLAVNVKLVADVEHVMDVSKRDFVPCPKVDSSV 232

Query: 181 VIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR 227
           V+IRPK E+P VNL+EWRAFTRTCF KKNKTLGATFKQK+K+++L+ 
Sbjct: 233 VLIRPKKEVPKVNLEEWRAFTRTCFGKKNKTLGATFKQKRKLMDLMH 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464528|ref|XP_004149981.1| PREDICTED: probable dimethyladenosine transferase-like [Cucumis sativus]

 Score =  379 bits (972), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 179/227 (78%), Positives = 206/227 (90%)

Query: 1   YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
           +++F+KS+GQHILTNQR+LDSIVRKS+I P DTVLEIGPGTGNLTLKLLE S+KV A+EI
Sbjct: 53  HLYFYKSRGQHILTNQRILDSIVRKSAILPTDTVLEIGPGTGNLTLKLLEASQKVIAVEI 112

Query: 61  DERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTK 120
           D+RMVE+L++R  +    DR+ VI +DALK EFP FDLVVANIPYGISSPLVAKLVYGT 
Sbjct: 113 DKRMVEVLHKRVVEHQLEDRICVICQDALKCEFPHFDLVVANIPYGISSPLVAKLVYGTI 172

Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
            FRSATLLLQKEFARRLLA PGDSE+NRLAVNVKLVADVE VMDVSKRDF+PCPKVDSSV
Sbjct: 173 PFRSATLLLQKEFARRLLADPGDSEYNRLAVNVKLVADVEHVMDVSKRDFVPCPKVDSSV 232

Query: 181 VIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR 227
           V+IRPK E+P+VNL+EWRAFTRTCF KKNKTLGATFKQK+K+++L+ 
Sbjct: 233 VLIRPKKEVPEVNLEEWRAFTRTCFGKKNKTLGATFKQKRKLMDLMH 279

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735070|emb|CBI17432.3| unnamed protein product [Vitis vinifera]

 Score =  378 bits (970), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 182/229 (79%), Positives = 207/229 (90%)

Query: 1   YIFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
           ++F +KS GQHILTN RVLD+IVRKS+I P DTVLEIGPGTGNLTL+LL+ +++V A+E+
Sbjct: 45  HMFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVEL 104

Query: 61  DERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTK 120
           D RMVEIL +R A+ G  D+L VI KDALKT+FPQFDLVVANIPYGISSPLVAKLV+G  
Sbjct: 105 DARMVEILRKRVAEHGLEDQLTVICKDALKTDFPQFDLVVANIPYGISSPLVAKLVFGAN 164

Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
            FRSATLLLQKEFARRLLA+PGDSEFNRLAVNVKLVA+VEFVMDVSKRDFLPCPKVDSSV
Sbjct: 165 PFRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSV 224

Query: 181 VIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
           V IRPKAE+PDV+L+EW AFTRTCFSKKNKTLGATFK K++V+EL RLS
Sbjct: 225 VTIRPKAEVPDVDLNEWCAFTRTCFSKKNKTLGATFKHKRRVMELWRLS 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147794654|emb|CAN73506.1| hypothetical protein VITISV_007907 [Vitis vinifera]

 Score =  374 bits (961), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/228 (79%), Positives = 205/228 (89%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +F +KS GQHILTN RVLD+IVRKS+I P DTVLEIGPGTGNLTL+LL+ +++V A+ +D
Sbjct: 46  MFLYKSWGQHILTNPRVLDTIVRKSNIKPTDTVLEIGPGTGNLTLRLLQAAQRVVAVXLD 105

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            RMVEIL +R A+ G  D+L VI KDALKT+FPQFDLVVANIPYGISSPLVAKLV+G   
Sbjct: 106 ARMVEILRKRVAEHGLEDQLTVICKDALKTDFPQFDLVVANIPYGISSPLVAKLVFGANP 165

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRSATLLLQKEFARRLLA+PGDSEFNRLAVNVKLVA+VEFVMDVSKRDFLPCPKVDSSVV
Sbjct: 166 FRSATLLLQKEFARRLLANPGDSEFNRLAVNVKLVAEVEFVMDVSKRDFLPCPKVDSSVV 225

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
            IRPKAEIPDV+L+EW AFTRTCFSKKNKTLGATFK K++V+EL RLS
Sbjct: 226 TIRPKAEIPDVDLNEWCAFTRTCFSKKNKTLGATFKHKRRVMELWRLS 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560978|ref|XP_002521501.1| dimethyladenosine transferase, putative [Ricinus communis] gi|223539179|gb|EEF40772.1| dimethyladenosine transferase, putative [Ricinus communis]

 Score =  368 bits (945), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 176/227 (77%), Positives = 200/227 (88%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +  +KSKGQH+LTN RVLD+IVR+S++ P DTVLEIGPGTGNLTL+LLEV++KV A+EID
Sbjct: 51  LHLYKSKGQHLLTNPRVLDTIVRRSAVEPTDTVLEIGPGTGNLTLRLLEVARKVVAVEID 110

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
           +RMVEIL  RA++ G  D+L++I KDALK EFP F++VVANIPYGISSPLV KLVYG   
Sbjct: 111 KRMVEILRERASEQGLQDKLDIIHKDALKAEFPNFNIVVANIPYGISSPLVTKLVYGVNK 170

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRS TLLLQKEFARRLLA+PGD E+NRLAVNVKLVADVEFVMDVSKRDF+P PKVDSSVV
Sbjct: 171 FRSLTLLLQKEFARRLLANPGDPEYNRLAVNVKLVADVEFVMDVSKRDFVPSPKVDSSVV 230

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRL 228
           IIRPK EIP VNL EWRAFTRTCF  KNKTLGA FKQKKKV+ELLR+
Sbjct: 231 IIRPKTEIPSVNLVEWRAFTRTCFGNKNKTLGAIFKQKKKVMELLRM 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483617|ref|XP_003612095.1| Dimethyladenosine transferase-like protein [Medicago truncatula] gi|355513430|gb|AES95053.1| Dimethyladenosine transferase-like protein [Medicago truncatula]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 178/228 (78%), Positives = 201/228 (88%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           I+F+KS+GQHILTN RVLD+IV+KS+INP DTVLEIGPGTGNLTLKLLE S++V AIEID
Sbjct: 30  IYFYKSRGQHILTNPRVLDTIVQKSAINPSDTVLEIGPGTGNLTLKLLEASREVVAIEID 89

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
           +RMV IL  RA   G  ++L VISKDAL+TEFP FDLVVANIPYGISSPL+ KL+Y T  
Sbjct: 90  QRMVNILENRALKRGLRNKLTVISKDALRTEFPPFDLVVANIPYGISSPLIIKLIYETTP 149

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRSATLLLQKEFARRLLA+PGDSEFNRLAVN+KL+ADVEFVMDVSKRDFLP PKVDSSVV
Sbjct: 150 FRSATLLLQKEFARRLLANPGDSEFNRLAVNIKLLADVEFVMDVSKRDFLPSPKVDSSVV 209

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
           IIRPK  +P VNL +WRAFTRTCF+ KNKTLGATFK K+KV+ELL  +
Sbjct: 210 IIRPKVNVPAVNLHQWRAFTRTCFNNKNKTLGATFKNKRKVLELLEFN 257

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|78499686|gb|ABB45840.1| hypothetical protein [Eutrema halophilum]

 Score =  358 bits (920), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 171/228 (75%), Positives = 198/228 (86%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +F HKSKGQH+LTN R+LD+IVR S + P DTVLEIGPGTGNLT+KLLE ++ V A+EID
Sbjct: 45  LFLHKSKGQHLLTNNRILDAIVRISDVRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVEID 104

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
           +RMVEIL +R AD G  D+L +I KD LKT+FPQFDLVVANIPY ISSPLVAKLVYG+ +
Sbjct: 105 KRMVEILGKRVADHGLEDKLTIIQKDVLKTDFPQFDLVVANIPYNISSPLVAKLVYGSNA 164

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRSATLLLQKEF+RRLLA+PGDS+FNRLAVNVKLVADV+FVMDVSKR+F+P PKVDSS+V
Sbjct: 165 FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVQFVMDVSKREFVPPPKVDSSLV 224

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
           IIRPK   PDV++ EW AFTRTCF  KNKTLG+ F+QKKKVIELL  S
Sbjct: 225 IIRPKEVKPDVDVQEWLAFTRTCFGNKNKTLGSMFRQKKKVIELLNFS 272

Source: Eutrema halophilum

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797749|ref|XP_002866759.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis lyrata subsp. lyrata] gi|297312594|gb|EFH43018.1| ribosomal RNA adenine dimethylase family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  352 bits (903), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 199/228 (87%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +F  KSKGQH+LTN R+LD+IVR S + P DTVLEIGPGTGNLT+KLLE ++ V A+E+D
Sbjct: 54  LFLCKSKGQHLLTNTRILDAIVRCSDVRPTDTVLEIGPGTGNLTMKLLEAAQDVVAVELD 113

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
           +RMVEIL +R +D GF  +L +I KD LKT+FPQFDLVVANIPY ISSPLVAKLVYG+ +
Sbjct: 114 KRMVEILRKRVSDHGFAHKLTIIQKDVLKTDFPQFDLVVANIPYNISSPLVAKLVYGSNT 173

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRSATLLLQKEF+RRLLA+PGDS+FNRLAVNVKLVADV+FVMDVSKR+F+P PKVDSSVV
Sbjct: 174 FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPKVDSSVV 233

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
           +I PK  IPDVN+ EW AFTRTCF KKNKTLG+ F+QKKKV+ELL LS
Sbjct: 234 MITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELLSLS 281

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573814|ref|NP_975003.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] gi|10177517|dbj|BAB10912.1| dimethyladenosine transferase-like protein [Arabidopsis thaliana] gi|332010821|gb|AED98204.1| Ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana]

 Score =  352 bits (902), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 170/228 (74%), Positives = 197/228 (86%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +F  KSKGQH+LTN R+LDSIVR S I P DTVLEIGPGTGNLT+KLLE ++ V A+E+D
Sbjct: 61  LFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVELD 120

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
           +RMVEIL +R +D GF D+L +I KD LKT+FP FDLVVANIPY ISSPLVAKLVYG+ +
Sbjct: 121 KRMVEILRKRVSDHGFADKLTIIQKDVLKTDFPHFDLVVANIPYNISSPLVAKLVYGSNT 180

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FRSATLLLQKEF+RRLLA+PGDS+FNRLAVNVKLVADV+FVMDVSKR+F+P PKVDSSV+
Sbjct: 181 FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPKVDSSVI 240

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
            I PK  IPDVN+ EW AFTRTCF KKNKTLG+ F+QKKKV+EL  LS
Sbjct: 241 RITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELQSLS 288

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	232
TAIR|locus:2155031	380	DIM1B "adenosine dimethyl tran	0.982	0.6	0.745	1.4e-87
TAIR|locus:2061982	353	DIM1A "AT2G47420" [Arabidopsis	0.965	0.634	0.564	6.4e-60
FB|FBgn0039627	306	CG11837 [Drosophila melanogast	0.965	0.732	0.488	2.6e-53
WB|WBGene00008455	308	E02H1.1 [Caenorhabditis elegan	0.956	0.720	0.511	8e-53
DICTYBASE|DDB_G0283789	314	dimt1l "dimethyladenosine tran	0.952	0.703	0.522	2.1e-52
UNIPROTKB|I3LLW6	313	DIMT1 "Uncharacterized protein	0.965	0.715	0.488	8.3e-51
UNIPROTKB|Q9UNQ2	313	DIMT1 "Probable dimethyladenos	0.965	0.715	0.484	1.3e-50
ZFIN|ZDB-GENE-040801-75	306	dimt1l "DIM1 dimethyladenosine	0.961	0.728	0.48	2.2e-50
MGI|MGI:1913504	313	Dimt1 "DIM1 dimethyladenosine	0.965	0.715	0.48	3.6e-50
RGD|1311752	313	Dimt1 "DIM1 dimethyladenosine	0.965	0.715	0.48	3.6e-50

TAIR|locus:2155031 DIM1B "adenosine dimethyl transferase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 1.4e-87, P = 1.4e-87
 Identities = 170/228 (74%), Positives = 197/228 (86%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             +F  KSKGQH+LTN R+LDSIVR S I P DTVLEIGPGTGNLT+KLLE ++ V A+E+D
Sbjct:    61 LFLCKSKGQHLLTNTRILDSIVRSSDIRPTDTVLEIGPGTGNLTMKLLEAAQNVVAVELD 120

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
             +RMVEIL +R +D GF D+L +I KD LKT+FP FDLVVANIPY ISSPLVAKLVYG+ +
Sbjct:   121 KRMVEILRKRVSDHGFADKLTIIQKDVLKTDFPHFDLVVANIPYNISSPLVAKLVYGSNT 180

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FRSATLLLQKEF+RRLLA+PGDS+FNRLAVNVKLVADV+FVMDVSKR+F+P PKVDSSV+
Sbjct:   181 FRSATLLLQKEFSRRLLANPGDSDFNRLAVNVKLVADVKFVMDVSKREFVPPPKVDSSVI 240

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLS 229
              I PK  IPDVN+ EW AFTRTCF KKNKTLG+ F+QKKKV+EL  LS
Sbjct:   241 RITPKEIIPDVNVQEWLAFTRTCFGKKNKTLGSMFRQKKKVMELQSLS 288

GO:0000154 "rRNA modification" evidence=IEA;IGI;ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA;IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA;ISS

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046085 "adenosine metabolic process" evidence=IMP

TAIR|locus:2061982 DIM1A "AT2G47420" [Arabidopsis thaliana (taxid:3702)]

 Score = 614 (221.2 bits), Expect = 6.4e-60, P = 6.4e-60
 Identities = 127/225 (56%), Positives = 157/225 (69%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             I FHKSKGQHIL N  ++DSIV+K+ I   D +LEIGPGTGNLT KLLE  K+V A+E+D
Sbjct:    26 ISFHKSKGQHILKNPLLVDSIVQKAGIKSTDVILEIGPGTGNLTKKLLEAGKEVIAVELD 85

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              RMV  L RR   + F +RL VI  D LKTE P+FD+ VANIPY ISSPL  KL++   S
Sbjct:    86 SRMVLELQRRFQGTPFSNRLKVIQGDVLKTELPRFDICVANIPYQISSPLTFKLLFHPTS 145

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A ++ Q+EFA RL+A PGD+ + RL+VN +L A V  ++ V K +F P PKVDSSVV
Sbjct:   146 FRCAVIMYQREFAMRLVAQPGDNLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKVDSSVV 205

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              I P+   P VN  EW  F R CF +KNKTLG+ FKQK  V+ +L
Sbjct:   206 RIEPRRPGPQVNKKEWDGFLRVCFIRKNKTLGSIFKQKS-VLSML 249

GO:0000154 "rRNA modification" evidence=ISS

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0001708 "cell fate specification" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0051301 "cell division" evidence=IMP

FB|FBgn0039627 CG11837 [Drosophila melanogaster (taxid:7227)]

 Score = 532 (192.3 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 110/225 (48%), Positives = 148/225 (65%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             I F+K  GQHIL N  V+ +++ K+++   D VLEIGPGTGN+T+++LE +KKV A EID
Sbjct:    21 IVFNKDFGQHILKNPLVITTMLEKAALRATDVVLEIGPGTGNMTVRMLERAKKVIACEID 80

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              R+   L +R   +    +L V+  D LK E P FDL +AN+PY ISSPL+ KL+     
Sbjct:    81 TRLAAELQKRVQATPLQPKLQVLIGDFLKAELPFFDLCIANVPYQISSPLIFKLLLHRPL 140

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct:   141 FRCAVLMFQREFAERLVAKPGDKLYCRLSINTQLLARVDMLMKVGKNNFRPPPKVESSVV 200

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              + PK   P VN  EW   TR  F +KNKTL ATFK    V+E+L
Sbjct:   201 RLEPKNPPPPVNFTEWDGLTRIAFLRKNKTLAATFKVTS-VLEML 244

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=ISS

GO:0000154 "rRNA modification" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0022008 "neurogenesis" evidence=IMP

WB|WBGene00008455 E02H1.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 114/223 (51%), Positives = 151/223 (67%)

Query:     4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
             F+  KGQHIL N  V+++IV KS++   DTVLE+GPGTGNLT+K+LEV+K V A EID R
Sbjct:    24 FNTDKGQHILKNPGVVNAIVEKSALKATDTVLEVGPGTGNLTVKMLEVAKTVIACEIDPR 83

Query:    64 MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
             M+  + +R   +   ++L V   D +K E+P FD+ VAN+PY ISSP V KL+      R
Sbjct:    84 MIAEVKKRVMGTPLQNKLQVNGGDVMKMEWPFFDVCVANLPYQISSPFVQKLLLHRPLPR 143

Query:   124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
              A L+ QKEFA RL+A PGD +++RL+VNV+L+A VE +M V + +F P PKVDS+VV I
Sbjct:   144 YAVLMFQKEFADRLVARPGDKDYSRLSVNVQLLAKVEMLMKVKRTEFRPPPKVDSAVVRI 203

Query:   184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              PK   P VN  EW    R CF +KNKTL A F+    VIE++
Sbjct:   204 APKNPPPPVNFVEWEGLLRLCFMRKNKTLMAIFRLSN-VIEVI 245

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

DICTYBASE|DDB_G0283789 dimt1l "dimethyladenosine transferase" [Dictyostelium discoideum (taxid:44689)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 116/222 (52%), Positives = 146/222 (65%)

Query:     5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
             +KS GQH+L N  ++D+IV KS +   DTVLEIGPGTGNLT+KLLE  KKV AIE+D RM
Sbjct:    30 NKSYGQHLLKNPLIIDAIVDKSQLKSTDTVLEIGPGTGNLTMKLLENCKKVIAIEVDPRM 89

Query:    65 VEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRS 124
                L +R A S +   L +I  D LK + P FD+ VAN+PY ISSPL  KL+     FR+
Sbjct:    90 AAELQKRVAASPYAQHLQIILGDFLKVDLPYFDVCVANVPYQISSPLTFKLLAHRPIFRT 149

Query:   125 ATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIR 184
             A L+ QKEFA RL A PGDS + RL+VN +L++ V  +M V K +FLP PKV+S+VV I 
Sbjct:   150 AVLMFQKEFALRLGAKPGDSLYCRLSVNTQLLSKVTHLMKVGKNNFLPPPKVESAVVRIE 209

Query:   185 PKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
             P    P +N  EW    + CFS+KNKTL   F+    VIE L
Sbjct:   210 PFNPPPPINFVEWDGLVKLCFSRKNKTLSGIFRVSS-VIETL 250

GO:0031167 "rRNA methylation" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0000154 "rRNA modification" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|I3LLW6 DIMT1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 110/225 (48%), Positives = 147/225 (65%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct:    28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVIACELD 87

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              R+V  L++R   +    RL V+  D LKT+ P FD  VAN+PY ISSP V KL+     
Sbjct:    88 PRLVAELHKRVQGTPLASRLQVMVGDVLKTDLPFFDACVANLPYQISSPFVFKLLLHRPF 147

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct:   148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              I PK   P +N  EW    R  F +KNKTL A FK    V +LL
Sbjct:   208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSA-VQQLL 251

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

UNIPROTKB|Q9UNQ2 DIMT1 "Probable dimethyladenosine transferase" [Homo sapiens (taxid:9606)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 109/225 (48%), Positives = 147/225 (65%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct:    28 LMFNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              R+V  L++R   +    +L V+  D LKT+ P FD  VAN+PY ISSP V KL+     
Sbjct:    88 PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPF 147

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct:   148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              I PK   P +N  EW    R  F +KNKTL A FK    V +LL
Sbjct:   208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSA-VQQLL 251

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-040801-75 dimt1l "DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 108/225 (48%), Positives = 146/225 (64%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             I F+   GQHIL N  V++ I+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct:    21 IMFNTGIGQHILKNPLVVNGIIEKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 80

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              R+V  L +R   +   ++L ++  D LKTE P FD+ VAN+PY ISSP V KL+     
Sbjct:    81 ARLVAELQKRVQCTPMQNKLQILIGDVLKTELPFFDVCVANLPYQISSPFVFKLLLHRPF 140

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +  V K +F P PKV+SSVV
Sbjct:   141 FRCAVLMFQREFAMRLVAKPGDKLYCRLSINTQLLARVDHLTKVGKNNFRPPPKVESSVV 200

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQK--KKVIE 224
              I PK   P VN  EW    R  F +KNK L A FK    +K++E
Sbjct:   201 RIEPKNPPPPVNFQEWDGLVRIAFVRKNKMLSAAFKSAAVEKLLE 245

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:1913504 Dimt1 "DIM1 dimethyladenosine transferase 1-like (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 108/225 (48%), Positives = 147/225 (65%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct:    28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              R+V  L++R   +    +L V+  D LK++ P FD  VAN+PY ISSP V KL+     
Sbjct:    88 PRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFFDACVANLPYQISSPFVFKLLLHRPF 147

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct:   148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              I PK   P +N  EW    R  F +KNKTL A FK    V +LL
Sbjct:   208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSA-VQQLL 251

GO:0000154 "rRNA modification" evidence=IEA

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008649 "rRNA methyltransferase activity" evidence=IEA

GO:0016433 "rRNA (adenine) methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0052909 "18S rRNA (adenine(1779)-N(6)/adenine(1780)-N(6))-dimethyltransferase activity" evidence=IEA

RGD|1311752 Dimt1 "DIM1 dimethyladenosine transferase 1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 108/225 (48%), Positives = 147/225 (65%)

Query:     2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
             + F+   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D
Sbjct:    28 LMFNTGIGQHILKNPLIVNSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD 87

Query:    62 ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
              R+V  L++R   +    +L V+  D LK++ P FD  VAN+PY ISSP V KL+     
Sbjct:    88 PRLVAELHKRVQGTPLASKLQVLVGDVLKSDLPFFDACVANLPYQISSPFVFKLLLHRPF 147

Query:   122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
             FR A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV
Sbjct:   148 FRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVV 207

Query:   182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
              I PK   P +N  EW    R  F +KNKTL A FK    V +LL
Sbjct:   208 RIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSA-VQQLL 251

GO:0000179 "rRNA (adenine-N6,N6-)-dimethyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54QK7	DIM1_DICDI	2, ., 1, ., 1, ., 1, 8, 3	0.5201	0.9568	0.7070	yes	no
B4S787	RSMA_PROA2	2, ., 1, ., 1, ., 1, 8, 2	0.36	0.9224	0.8199	yes	no
Q8EU92	RSMA_MYCPE	2, ., 1, ., 1, ., 1, 8, 2	0.3304	0.9396	0.8014	yes	no
Q98RJ3	RSMA_MYCPU	2, ., 1, ., 1, ., 1, 8, 2	0.3938	0.9224	0.8492	yes	no
O28491	RSMA_ARCFU	2, ., 1, ., 1, ., -	0.4101	0.9008	0.8565	yes	no
Q09522	DIM1_CAEEL	2, ., 1, ., 1, ., 1, 8, 3	0.5112	0.9568	0.7207	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766
4th Layer	2.1.1.8	LOW CONFIDENCE prediction!
4th Layer	2.1.1.182	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	232
PTZ00338	294	PTZ00338, PTZ00338, dimethyladenosine transferase-	1e-100
COG0030	259	COG0030, KsgA, Dimethyladenosine transferase (rRNA	5e-83
TIGR00755	253	TIGR00755, ksgA, dimethyladenosine transferase	2e-77
PRK00274	272	PRK00274, ksgA, 16S ribosomal RNA methyltransferas	1e-72
smart00650	169	smart00650, rADc, Ribosomal RNA adenine dimethylas	9e-72
PRK14896	258	PRK14896, ksgA, 16S ribosomal RNA methyltransferas	4e-68
pfam00398	254	pfam00398, RrnaAD, Ribosomal RNA adenine dimethyla	1e-62
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	1e-13
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	2e-10
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	9e-10
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	1e-09
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	4e-08
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	2e-07
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	3e-07
COG2519	256	COG2519, GCD14, tRNA(1-methyladenosine) methyltran	5e-07
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	1e-06
pfam06325	294	pfam06325, PrmA, Ribosomal protein L11 methyltrans	2e-06
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	2e-06
PRK07580	230	PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr	3e-06
PRK00216	239	PRK00216, ubiE, ubiquinone/menaquinone biosynthesi	5e-06
TIGR00406	288	TIGR00406, prmA, ribosomal protein L11 methyltrans	6e-06
COG2226	238	COG2226, UbiE, Methylase involved in ubiquinone/me	1e-05
COG2242	187	COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme	1e-05
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-05
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	4e-05
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	4e-05
PRK06202	232	PRK06202, PRK06202, hypothetical protein; Provisio	4e-05
COG2518	209	COG2518, Pcm, Protein-L-isoaspartate carboxylmethy	5e-05
COG3963	194	COG3963, COG3963, Phospholipid N-methyltransferase	9e-05
COG4076	252	COG4076, COG4076, Predicted RNA methylase [General	2e-04
COG0116	381	COG0116, COG0116, Predicted N6-adenine-specific DN	2e-04
TIGR01934	223	TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone	3e-04
COG2263	198	COG2263, COG2263, Predicted RNA methylase [Transla	3e-04
PRK00517	250	PRK00517, prmA, ribosomal protein L11 methyltransf	3e-04
COG2230	283	COG2230, Cfa, Cyclopropane fatty acid synthase and	4e-04
PRK00377	198	PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltr	4e-04
COG0421	282	COG0421, SpeE, Spermidine synthase [Amino acid tra	6e-04
PTZ00098	263	PTZ00098, PTZ00098, phosphoethanolamine N-methyltr	7e-04
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	8e-04
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	0.001
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	0.001
TIGR00537	179	TIGR00537, hemK_rel_arch, HemK-related putative me	0.002
COG4122	219	COG4122, COG4122, Predicted O-methyltransferase [G	0.002
COG2264	300	COG2264, PrmA, Ribosomal protein L11 methylase [Tr	0.004
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	0.004

>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein; Provisional

 Score =  291 bits (747), Expect = e-100
 Identities = 131/225 (58%), Positives = 156/225 (69%), Gaps = 1/225 (0%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           + F+K  GQHIL N  VLD IV K++I P DTVLEIGPGTGNLT KLL+++KKV AIEID
Sbjct: 8   MVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEID 67

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKS 121
            RMV  L +R  +S    +L VI  DALKTEFP FD+ VAN+PY ISSPLV KL+     
Sbjct: 68  PRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPL 127

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
           FR A L+ QKEFA RLLA PGD  + RL+VN +L+  V  +M VSK  F P PKV+SSVV
Sbjct: 128 FRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQLLCRVTHLMKVSKNSFNPPPKVESSVV 187

Query: 182 IIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
            I PK   PDV+ +EW    R CFS+KNKTL A FK  K V++ L
Sbjct: 188 RIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFK-TKSVLQTL 231

Length = 294

>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

 Score =  247 bits (633), Expect = 5e-83
 Identities = 101/229 (44%), Positives = 139/229 (60%), Gaps = 8/229 (3%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
            +K  GQ+ L ++ V+D IV  ++I+P D VLEIGPG G LT  LLE + +V AIEID R
Sbjct: 4   PNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRR 63

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFP---QFDLVVANIPYGISSPLVAKLVYGTK 120
           + E+L  R A    +D L VI+ DALK +FP   Q   VVAN+PY ISSP++ KL+    
Sbjct: 64  LAEVLKERFA---PYDNLTVINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEKF 120

Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
             +   L++QKE A RL+A PG  ++ RL+V V+  ADVE V DV    F P PKVDS+V
Sbjct: 121 IIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYADVEIVFDVPPSAFYPPPKVDSAV 180

Query: 181 VIIRPKAE--IPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR 227
           V + PK E   P  + +++  F +  FS++ KTL    K    + E+L 
Sbjct: 181 VRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEVLE 229

Length = 259

>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase

 Score =  233 bits (596), Expect = 2e-77
 Identities = 90/220 (40%), Positives = 125/220 (56%), Gaps = 7/220 (3%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
               KS GQ+ L ++ V+  IV  +++   D VLEIGPG G LT  LL+ +KKV AIEID
Sbjct: 1   FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEID 60

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVYG 118
            R+ E L +       ++ L +I  DALK +  +F     VV+N+PY ISSPL+ KL+  
Sbjct: 61  RRLAERLRKLL---SLYENLEIIEGDALKVDLNEFPKQLKVVSNLPYNISSPLIFKLLEK 117

Query: 119 TKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDS 178
            K FR A L++QKE A RL A PG  ++ RL+V V+  A+VE V  V    F P PKVDS
Sbjct: 118 DK-FRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYFANVEIVFKVPPSAFYPPPKVDS 176

Query: 179 SVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
           +VV + P+   P  +   +    +  F ++ KTL    K 
Sbjct: 177 AVVRLIPRETFPVKDEALFEKLLKAAFQQRRKTLRNNLKN 216

In both E. coli and Saccharomyces cerevisiae, this protein is responsible for the dimethylation of two adjacent adenosine residues in a conserved hairpin of 16S rRNA in bacteria, 18S rRNA in eukaryotes. This adjacent dimethylation is the only rRNA modification shared by bacteria and eukaryotes. A single member of this family is present in each of the first 20 completed microbial genomes. This protein is essential in yeast, but not in E. coli, where its deletion leads to resistance to the antibiotic kasugamycin. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase [Protein synthesis, tRNA and rRNA base modification]. Length = 253

>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

 Score =  221 bits (567), Expect = 1e-72
 Identities = 90/233 (38%), Positives = 128/233 (54%), Gaps = 12/233 (5%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
               KS GQ+ L ++ +LD IV  +   P D VLEIGPG G LT  LLE + KV A+EID
Sbjct: 14  HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEID 73

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGT 119
             +  IL    A     D L +I  DALK +  +     VVAN+PY I++PL+  L+   
Sbjct: 74  RDLAPILAETFA----EDNLTIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEER 129

Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
              R   +++QKE A R++A PG   + RL+V V+   DVE V DV    F+P PKVDS+
Sbjct: 130 DPIRDMVVMVQKEVAERIVAKPGSKAYGRLSVLVQYYCDVEKVFDVPPSAFVPPPKVDSA 189

Query: 180 VVIIRPKAE--IPDVNLDEWRAFTRTCFSKKNKTLGATFKQ----KKKVIELL 226
           VV + P+ E  +P  + + +    +  F+++ KTL    K     K+K+ E L
Sbjct: 190 VVRLVPRKEPPVPVKDEELFFRVVKAAFAQRRKTLRNNLKNLFGSKEKLEEAL 242

Length = 272

>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases

 Score =  215 bits (551), Expect = 9e-72
 Identities = 81/172 (47%), Positives = 109/172 (63%), Gaps = 5/172 (2%)

Query: 18  VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF 77
           V+D IVR +++ P DTVLEIGPG G LT +LLE +K+V AIEID R+   L  + A    
Sbjct: 1   VIDKIVRAANLRPGDTVLEIGPGKGALTEELLERAKRVTAIEIDPRLAPRLREKFAA--- 57

Query: 78  HDRLNVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFAR 135
            D L VI  DALK + P  Q   VV N+PY IS+P++ KL+    +FR A L++QKE AR
Sbjct: 58  ADNLTVIHGDALKFDLPKLQPYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVAR 117

Query: 136 RLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA 187
           RL A PG  ++ RL+V ++  ADV+ +  V    F P PKVDS+VV +  + 
Sbjct: 118 RLAAKPGSKDYGRLSVLLQPYADVKILFKVPPSAFRPPPKVDSAVVRLERRP 169

Length = 169

>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

 Score =  209 bits (535), Expect = 4e-68
 Identities = 90/208 (43%), Positives = 124/208 (59%), Gaps = 6/208 (2%)

Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
           K  GQH L + RV+D IV  +     D VLEIGPG G LT +L + +KKV+AIE+D R+ 
Sbjct: 5   KKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLA 64

Query: 66  EILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSA 125
           E L      +G    + +I  DALK + P+F+ VV+N+PY ISSP+  KL+     F  A
Sbjct: 65  EFLRDDEIAAG---NVEIIEGDALKVDLPEFNKVVSNLPYQISSPITFKLL--KHGFEPA 119

Query: 126 TLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP 185
            L+ QKEFA R++A PG  E+ RL+V V+  ADVE V  V    F P PKVDS+VV + P
Sbjct: 120 VLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEIVEKVPPGAFSPKPKVDSAVVRLTP 179

Query: 186 KAEIPDVNLDEWRA-FTRTCFSKKNKTL 212
           +    +V  +++   F +  F  + KTL
Sbjct: 180 REPKYEVYDEDFFDDFVKALFQHRRKTL 207

Length = 258

>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase

 Score =  195 bits (499), Expect = 1e-62
 Identities = 84/217 (38%), Positives = 130/217 (59%), Gaps = 8/217 (3%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
             +  GQ+ LTN +V++ IV K+++   DTVLEIGPG G LT +L + +K+V AIEID R
Sbjct: 3   GRRKYGQNFLTNPKVINRIVDKANLQESDTVLEIGPGKGALTTELAKRAKQVVAIEIDPR 62

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKS 121
           + + L  + A    H  + V+ +D LK  FP+ D  LVV NIPY I++P+V KL++ ++ 
Sbjct: 63  LAKRLQEKLAL---HPNVEVVHQDFLKFSFPKDDPFLVVGNIPYNITTPIVKKLLFESRF 119

Query: 122 FRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV 181
                L++QKEFARRLLA P     +RL V  +   D++ V  V +  F P PKVDS++V
Sbjct: 120 GVKMLLVVQKEFARRLLARPKIR--SRLTVLTEPFTDIKLVAKVPRSSFRPPPKVDSALV 177

Query: 182 IIRPKAE-IPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            +  +   +P  +L ++    R  F+ K ++L  + +
Sbjct: 178 RLERRDTPLPVKDLKKYDYLVRKLFNGKGRSLFTSLR 214

Length = 254

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 5/85 (5%)

Query: 31  DDTVLEIGPGTGNLTLKLLEVSKK--VHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
            D VL+ G G+G   L          V  +E+D     +  RR A +G   R+ V+  DA
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 89  LKTEF---PQFDLVVANIPYGISSP 110
            +        FDLV+ N PYG  + 
Sbjct: 61  RELLELPDGSFDLVLGNPPYGPRAG 85

This family contains methyltransferase domains. Length = 117

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
           P   VL+IG GTG+L ++L  +    +V  +++   M+E+    A       R+  +  D
Sbjct: 1   PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGD 59

Query: 88  ALK--TEFPQFDLVVAN 102
           A         FD V   
Sbjct: 60  APDALDLLEGFDAVFIG 76

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 53.9 bits (130), Expect = 9e-10
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 4/72 (5%)

Query: 35  LEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHD--RLNVISKDALK 90
           L+IG GTG L   LLE     +   ++I    +E    R A  G  D  R+ +   DA+ 
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 91  TEFPQFDLVVAN 102
            +   FD+VVA+
Sbjct: 61  LDPGSFDVVVAS 72

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)

Query: 33  TVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK- 90
            VL++G GTG L L L      +V  ++I    +E+  R+AA +   D + V+  DA + 
Sbjct: 1   RVLDLGCGTGALALALASGPGARVTGVDISPVALELA-RKAAAALLADNVEVLKGDAEEL 59

Query: 91  --TEFPQFDLVVANIPYGISSPLVAKLV 116
                  FD+++++ P       +A+ +
Sbjct: 60  PPEADESFDVIISDPPLHHLVEDLARFL 87

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 34  VLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
           +L++G GTG +   L       V  ++I +  +E+   R  D G   R  V     L  E
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLPFE 60

Query: 93  FPQFDLVVA 101
              FDLV+ 
Sbjct: 61  EGSFDLVIC 69

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 49.9 bits (120), Expect = 2e-07
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 33  TVLEIGPGTGNLTLKLLEVSKKVH--AIEIDERMVEILNRRAADSGFHDRLNVISKDAL- 89
            +L++G G G L L L + ++K     +EI E   E+  R  A +   +R+ VI  D   
Sbjct: 47  RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKE 106

Query: 90  ---KTEFPQFDLVVANIPY 105
                 F  FDL++ N PY
Sbjct: 107 FLKALVFASFDLIICNPPY 125

Length = 248

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)

Query: 31  DDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
           D  +L++G G+G + + L +     +V A++I    + +    A  +G    L V S D 
Sbjct: 111 DKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQS-DL 169

Query: 89  LKTEFPQFDLVVANIPY 105
            +    +FDL+V+N PY
Sbjct: 170 FEPLRGKFDLIVSNPPY 186

Length = 280

>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 4/87 (4%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSK--KVHAIEIDERMVEILNRRAADSGFH 78
           IV +  I+P   VLE G G+G LT  L   V     V   EI E   +      ++ G  
Sbjct: 86  IVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLG 145

Query: 79  DRLNVISKDALKTEFPQ-FDLVVANIP 104
           DR+ +   D  +    +  D V  ++P
Sbjct: 146 DRVTLKLGDVREGIDEEDVDAVFLDLP 172

Length = 256

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 46.7 bits (111), Expect = 1e-06
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH----DR 80
           +     VL++G GTG LT  L E      +V  I+I E  +E     A   G+      +
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60

Query: 81  LNVISKDALKTEFPQFDLVVAN 102
            ++     L+ E   FD+V++N
Sbjct: 61  GDIEELPQLQLEDNSFDVVISN 82

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 15/98 (15%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSG 76
           L+S+V+     P +TVL++G G+G L +    L   KKV  ++ID   V      A  +G
Sbjct: 154 LESLVK-----PGETVLDVGCGSGILAIAALKLGA-KKVVGVDIDPVAVRAAKENAELNG 207

Query: 77  FHDRLNVI-SKDALKTEFPQFDLVVANIPYGISSPLVA 113
              +L V    D  +    + D+VVANI   ++ PL+ 
Sbjct: 208 VEAQLEVYLPGDLPEG---KADVVVANI---LADPLIE 239

This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences. Length = 294

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 26/91 (28%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 16  QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLL-EVSK--KVHAIEIDERMVEILNRRA 72
           +R         ++ P D VL++G G GN   +L   V    +V  I+  E M+ +   RA
Sbjct: 5   RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERA 64

Query: 73  ADSGFHDRLNVISKDALKTEFPQ--FDLVVA 101
           A  G    +  +  DA    FP   FD V +
Sbjct: 65  AGLG--PNVEFVRGDADGLPFPDGSFDAVRS 93

Length = 241

>gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 33  TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
            +L+ G G G+L++ L     KV A +I  +MVE    RA ++G    +     D L++ 
Sbjct: 66  RILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD-LESL 124

Query: 93  FPQFDLVVA 101
             +FD VV 
Sbjct: 125 LGRFDTVVC 133

Length = 230

>gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

 Score = 45.5 bits (109), Expect = 5e-06
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 11/106 (10%)

Query: 7   SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEID--ER 63
           S G H +  ++     ++   + P D VL++  GTG+L + L + V K    + +D  E 
Sbjct: 32  SFGLHRVWRRKT----IKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEG 87

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI 107
           M+ +   +  D G    +  +  DA    FP   FD V   I +G+
Sbjct: 88  MLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAV--TIAFGL 131

Length = 239

>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 8/87 (9%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNRRAADSG 76
           L+ +  K     D  V+++G G+G L+     L  +K V  I+ID   VE   + A  + 
Sbjct: 153 LEDLDLK-----DKNVIDVGCGSGILSIAALKLGAAK-VVGIDIDPLAVESARKNAELNQ 206

Query: 77  FHDRLNVISKDALKTEFPQFDLVVANI 103
             DRL V      +    + D++VANI
Sbjct: 207 VSDRLQVKLIYLEQPIEGKADVIVANI 233

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 288

>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 28/105 (26%), Positives = 46/105 (43%), Gaps = 11/105 (10%)

Query: 7   SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID--ERM 64
           S G H L  + +    +    I P D VL++  GTG++ L L +       + +D  E M
Sbjct: 32  SFGLHRLWRRAL----ISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESM 87

Query: 65  VEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI 107
           +E+   +    G  + +  +  DA    FP   FD V   I +G+
Sbjct: 88  LEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVT--ISFGL 129

Length = 238

>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism]

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 29/91 (31%), Positives = 47/91 (51%), Gaps = 4/91 (4%)

Query: 3  FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEI 60
           F + +G  + T + +    + K    P D + +IG GTG++T++      S +V AIE 
Sbjct: 8  LFERDEGGPM-TKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIER 66

Query: 61 DERMVEILNRRAADSGFHDRLNVISKDALKT 91
          DE  +E++ R AA  G  D L V+  DA + 
Sbjct: 67 DEEALELIERNAARFGV-DNLEVVEGDAPEA 96

Length = 187

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 41.1 bits (97), Expect = 3e-05
 Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 10/71 (14%)

Query: 35  LEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF 93
           L++G GTG L   L      +V  +++   M+ +  +R            +  DA    F
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR-------APRKFVVGDAEDLPF 53

Query: 94  P--QFDLVVAN 102
           P   FD+VV++
Sbjct: 54  PDESFDVVVSS 64

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 43.2 bits (103), Expect = 4e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 18  VLDSIVRKSSINPDDTVLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75
           +++  +    +     VL++G G+G   L L       +V A++I    + +  RR A  
Sbjct: 96  LVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVA-RRNAKH 154

Query: 76  GFHDRLNVISKDALKT-EFPQFDLVVANIPY 105
           G   R+  +  D  +     +FDL+V+N PY
Sbjct: 155 GLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185

Length = 275

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 33  TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE 92
            VL+ G GTG L+++L +    V A++I E+MV++   RA        +     D L   
Sbjct: 58  RVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC 117

Query: 93  FPQFDLVVA 101
             +FD+VV 
Sbjct: 118 -GEFDIVVC 125

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 8/76 (10%)

Query: 33  TVLEIGPGTGNLTLKLLEVSKK------VHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
           T+L+IG G G+L + L   +++      V AI+ D R V          G          
Sbjct: 63  TLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQAVS 120

Query: 87  DALKTEFPQFDLVVAN 102
           D L  E  +FD+V +N
Sbjct: 121 DELVAEGERFDVVTSN 136

Length = 232

>gnl|CDD|225316 COG2518, Pcm, Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

 Score = 42.6 bits (101), Expect = 5e-05
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
           + P D VLEIG G+G     L  +  +V +IE  E + E   R     G+ + + V   D
Sbjct: 70  LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGD 128

Query: 88  ALK--TEFPQFDLVV 100
             K   E   +D ++
Sbjct: 129 GSKGWPEEAPYDRII 143

Length = 209

>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]

 Score = 41.6 bits (98), Expect = 9e-05
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 23/109 (21%)

Query: 26  SSINPDDT--VLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDR 80
           S I+P+    VLE+GPGTG +T  +L      + + AIE     V  LN+       +  
Sbjct: 42  SVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL------YPG 95

Query: 81  LNVISKDALKTEF-------PQFDLVV-----ANIPYGISSPLVAKLVY 117
           +N+I+ DA              FD V+      N P      ++  L+Y
Sbjct: 96  VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESLLY 144

Length = 194

>gnl|CDD|226562 COG4076, COG4076, Predicted RNA methylase [General function prediction only]

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 31  DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           +DT  ++G G+G L++     +++V AIE D +   +        G      V+  DA  
Sbjct: 33  EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARD 91

Query: 91  TEFPQFDLVVA 101
            +F   D+V+ 
Sbjct: 92  YDFENADVVIC 102

Length = 252

>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%)

Query: 53  KKVHAIEIDERMVEI--LNRRAADSGFHDRLNVISKDA--LKTEFPQFDLVVANIPYGI- 107
             ++  +ID R +E    N RAA  G  D +     DA  LK    ++ +V++N PYG  
Sbjct: 255 PIIYGSDIDPRHIEGAKANARAA--GVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER 312

Query: 108 --SSPLVAKL 115
             S  LVAKL
Sbjct: 313 LGSEALVAKL 322

Length = 381

>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 14/106 (13%)

Query: 7   SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDER 63
           S G H L  +R     V+   +     VL++  GTG+L ++L + +    KV  ++    
Sbjct: 20  SFGLHRLWRRRA----VKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSE 75

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI 107
           M+E+  +++        +  I  DA    F    FD V   I +G+
Sbjct: 76  MLEVAKKKSEL---PLNIEFIQADAEALPFEDNSFDAV--TIAFGL 116

This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223

>gnl|CDD|225172 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 33  TVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
           TVL++G GTG L +    +   +V A++ID   +EI   RA        +  +  D   +
Sbjct: 48  TVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIA--RANAEELLGDVEFVVADV--S 103

Query: 92  EFP-QFDLVVANIPYGI 107
           +F  +FD V+ N P+G 
Sbjct: 104 DFRGKFDTVIMNPPFGS 120

Length = 198

>gnl|CDD|234786 PRK00517, prmA, ribosomal protein L11 methyltransferase; Reviewed

 Score = 40.5 bits (96), Expect = 3e-04
 Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 22/91 (24%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVE--ILNRRAA 73
           L+ +V      P  TVL++G G+G L     KL   +KKV A++ID + VE    N    
Sbjct: 113 LEKLVL-----PGKTVLDVGCGSGILAIAAAKLG--AKKVLAVDIDPQAVEAARENAE-- 163

Query: 74  DSGFHDRLN-VISKDALKTEFPQFDLVVANI 103
                  LN V     L     + D++VANI
Sbjct: 164 -------LNGVELNVYLPQGDLKADVIVANI 187

Length = 250

>gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAADSGF 77
           LD I+ K  + P  T+L+IG G G L +    E    V  + + E  +    +R A  G 
Sbjct: 61  LDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGL 120

Query: 78  HDRLNVISKDALKTEFPQFDLVVA 101
            D + V  +D  +     FD +V+
Sbjct: 121 EDNVEVRLQD-YRDFEEPFDRIVS 143

Length = 283

>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)

Query: 32  DTVLEIGPGTGNLTLK---LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
           D +L+IG GTG++T++   L+  + KV+A++ DE+ + +  R A   G  + + +I  +A
Sbjct: 42  DMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA 101

Query: 89  ---LKTEFPQFD 97
              L T   +FD
Sbjct: 102 PEILFTINEKFD 113

Length = 198

>gnl|CDD|223498 COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 14/97 (14%)

Query: 34  VLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRR----AADSGFHDRLNVISK 86
           VL IG G G      LK L V +++  +EID  ++E L R+     +      R+ +I  
Sbjct: 80  VLIIGGGDGGTLREVLKHLPV-ERITMVEIDPAVIE-LARKYLPEPSGGADDPRVEIIID 137

Query: 87  DALK--TEFP-QFDLVVANI--PYGISSPLVAKLVYG 118
           D ++   +   +FD+++ +   P G +  L  +  Y 
Sbjct: 138 DGVEFLRDCEEKFDVIIVDSTDPVGPAEALFTEEFYE 174

Length = 282

>gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional

 Score = 39.6 bits (92), Expect = 7e-04
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 10/91 (10%)

Query: 12  ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNR 70
           I    ++L  I     +N +  VL+IG G G     + E     VH ++I E+MV I   
Sbjct: 38  IEATTKILSDI----ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKL 93

Query: 71  RAADSGFHDRLNVISKDALKTEFPQ--FDLV 99
           R +D    +++   + D LK +FP+  FD++
Sbjct: 94  RNSDK---NKIEFEANDILKKDFPENTFDMI 121

Length = 263

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 38.7 bits (91), Expect = 8e-04
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 4/79 (5%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSKK--VHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
                VL++G G G L   L + S    V  ++I+ R +E      A +G  +   V   
Sbjct: 30  PLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGL-ENGEVFWS 88

Query: 87  DALKTEFP-QFDLVVANIP 104
           D      P +FDL+++N P
Sbjct: 89  DLYSAVEPGKFDLIISNPP 107

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 4/81 (4%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR-LNVISK 86
               D VLE+G G+G + +   +  KKV  ++I+   VE     A  +   +  + VI  
Sbjct: 21  DKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRS 80

Query: 87  DALK--TEFPQFDLVVANIPY 105
           D  +       FD+++ N PY
Sbjct: 81  DLFEPFRGDK-FDVILFNPPY 100

Length = 188

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 2/97 (2%)

Query: 6   KSKGQHIL--TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           + K  H +       +  + R     P   VL++G G G L+  L  +   V  I+  E+
Sbjct: 33  EFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEK 92

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVV 100
            +E+    A +SG +      + + L +   QFD+V 
Sbjct: 93  PIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVT 129

Length = 243

>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase

 Score = 37.9 bits (88), Expect = 0.002
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 3/78 (3%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
           + PDD VLEIG GTG + ++L    K +   +I+   V+ L   A  +     L+V+  D
Sbjct: 18  LKPDD-VLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVG--LDVVMTD 74

Query: 88  ALKTEFPQFDLVVANIPY 105
             K    +FD+++ N PY
Sbjct: 75  LFKGVRGKFDVILFNPPY 92

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes [Unknown function, Enzymes of unknown specificity]. Length = 179

>gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)

Query: 27  SINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNV 83
            ++    +LEIG   G   L +        ++  IE DE   EI     A++G  DR+ +
Sbjct: 56  RLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIEL 115

Query: 84  I-SKDAL----KTEFPQFDLV 99
           +   DAL    +     FDLV
Sbjct: 116 LLGGDALDVLSRLLDGSFDLV 136

Length = 219

>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSG 76
           L+ +++K       TVL++G G+G L +    L   KKV  ++ID + VE     A  +G
Sbjct: 156 LEKLLKK-----GKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNG 209

Query: 77  FH--DRLNVISKDALKTEFPQFDLVVANI 103
                +        +    P FD++VANI
Sbjct: 210 VELLVQAKGFLLLEVPENGP-FDVIVANI 237

Length = 300

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 37.2 bits (87), Expect = 0.004
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 11/85 (12%)

Query: 23  VRKSSINPDDTVLEIGPGT-GNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD 79
           VR + I   DTV+ IG GT G L ++ L++   K+V A++ID+  + +    A + G  D
Sbjct: 152 VRLAGITLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAV----ARELGADD 207

Query: 80  RLNVISKDALK----TEFPQFDLVV 100
            +N   +D  K    TE    DLV+
Sbjct: 208 TINPKEEDVEKVRELTEGRGADLVI 232

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	232
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	100.0
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	100.0
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	100.0
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	100.0
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	100.0
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	100.0
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	100.0
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	100.0
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	99.94
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.69
PHA03412	241	putative methyltransferase; Provisional	99.66
COG4123	248	Predicted O-methyltransferase [General function pr	99.65
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.63
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.58
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.56
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.56
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.56
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.56
PHA03411	279	putative methyltransferase; Provisional	99.55
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.55
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.55
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.52
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.52
COG2890	280	HemK Methylase of polypeptide chain release factor	99.51
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.5
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.5
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.5
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.49
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.49
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.49
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.48
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.48
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.48
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.47
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.47
PRK11207	197	tellurite resistance protein TehB; Provisional	99.47
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.46
PRK14967	223	putative methyltransferase; Provisional	99.46
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.46
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.46
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.46
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.46
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.46
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.46
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.44
PLN02244	340	tocopherol O-methyltransferase	99.44
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.44
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.43
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.42
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.42
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	99.41
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.41
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.41
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.41
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.41
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.4
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.4
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.4
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.4
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.39
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.38
PRK14968	188	putative methyltransferase; Provisional	99.38
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.38
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.38
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.37
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	99.37
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	99.37
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.37
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.36
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.36
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.36
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.36
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.36
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.35
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.35
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.34
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.34
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.33
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.33
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.32
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.32
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.32
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.32
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.32
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.31
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.31
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.31
PLN02672	1082	methionine S-methyltransferase	99.3
PLN03075	296	nicotianamine synthase; Provisional	99.3
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.3
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.3
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.3
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	99.29
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.28
PRK07402	196	precorrin-6B methylase; Provisional	99.28
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.28
KOG2904	328	consensus Predicted methyltransferase [General fun	99.28
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	99.27
PRK12335	287	tellurite resistance protein TehB; Provisional	99.27
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.27
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	99.27
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.27
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	99.27
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.26
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.26
PLN02336	475	phosphoethanolamine N-methyltransferase	99.26
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.25
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	99.24
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.24
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.23
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.23
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.22
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.22
PRK05785	226	hypothetical protein; Provisional	99.22
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.21
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.2
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.2
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.19
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.19
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.18
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.18
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.17
PRK04266	226	fibrillarin; Provisional	99.16
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.16
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.16
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.15
PRK04148	134	hypothetical protein; Provisional	99.15
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.15
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.14
COG0742	187	N6-adenine-specific methylase [DNA replication, re	99.13
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.12
PRK06202	232	hypothetical protein; Provisional	99.11
KOG1271	227	consensus Methyltransferases [General function pre	99.11
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	99.11
PRK06922	677	hypothetical protein; Provisional	99.11
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.1
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.1
PLN02336	475	phosphoethanolamine N-methyltransferase	99.1
PRK08317	241	hypothetical protein; Provisional	99.09
PLN02490	340	MPBQ/MSBQ methyltransferase	99.09
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.08
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.07
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.07
PRK04457	262	spermidine synthase; Provisional	99.05
PLN02476	278	O-methyltransferase	99.05
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	99.04
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.04
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	99.03
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	99.03
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.02
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.01
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.0
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.98
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	98.98
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.97
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.97
PTZ00146	293	fibrillarin; Provisional	98.97
COG4076	252	Predicted RNA methylase [General function predicti	98.97
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.97
KOG2730	263	consensus Methylase [General function prediction o	98.96
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.95
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.95
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.93
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.92
COG4122	219	Predicted O-methyltransferase [General function pr	98.92
PRK00811	283	spermidine synthase; Provisional	98.92
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.91
COG0286	489	HsdM Type I restriction-modification system methyl	98.88
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.88
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.87
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.85
COG2521	287	Predicted archaeal methyltransferase [General func	98.84
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.83
TIGR03438	301	probable methyltransferase. This model represents	98.83
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	98.82
PLN02366	308	spermidine synthase	98.82
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.81
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.8
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	98.8
KOG3010	261	consensus Methyltransferase [General function pred	98.8
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.8
TIGR00438	188	rrmJ cell division protein FtsJ.	98.79
COG2520	341	Predicted methyltransferase [General function pred	98.79
PRK10742	250	putative methyltransferase; Provisional	98.78
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.77
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.77
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.77
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.76
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.73
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.73
PRK03612	521	spermidine synthase; Provisional	98.73
PRK01581	374	speE spermidine synthase; Validated	98.71
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.71
KOG4300	252	consensus Predicted methyltransferase [General fun	98.7
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.68
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.68
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.64
PF13679	141	Methyltransf_32: Methyltransferase domain	98.58
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.54
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.54
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.53
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.52
PLN02823	336	spermine synthase	98.47
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.43
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.42
KOG2671	421	consensus Putative RNA methylase [Replication, rec	98.42
KOG2899	288	consensus Predicted methyltransferase [General fun	98.4
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.33
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.3
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.29
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.29
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	98.27
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	98.27
KOG2361	264	consensus Predicted methyltransferase [General fun	98.26
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.24
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.17
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	98.14
COG3897	218	Predicted methyltransferase [General function pred	98.14
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	98.13
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	98.13
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.12
PRK00536	262	speE spermidine synthase; Provisional	98.03
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.03
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	98.02
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.02
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.0
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.96
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.94
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	97.89
KOG2940	325	consensus Predicted methyltransferase [General fun	97.88
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	97.88
PRK11524	284	putative methyltransferase; Provisional	97.78
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.76
KOG4058	199	consensus Uncharacterized conserved protein [Funct	97.75
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.74
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	97.71
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.69
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.62
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.61
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	97.58
COG4262	508	Predicted spermidine synthase with an N-terminal m	97.58
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.56
PRK13699	227	putative methylase; Provisional	97.55
TIGR00497	501	hsdM type I restriction system adenine methylase (	97.53
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.5
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.49
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.45
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.4
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.39
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.31
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.24
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.23
PHA01634	156	hypothetical protein	97.21
KOG2912	419	consensus Predicted DNA methylase [Function unknow	97.11
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.06
PLN02232	160	ubiquinone biosynthesis methyltransferase	97.05
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	97.01
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	96.96
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.91
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	96.82
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	96.74
KOG2078	495	consensus tRNA modification enzyme [RNA processing	96.74
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.67
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	96.64
KOG3115	249	consensus Methyltransferase-like protein [General	96.59
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	96.57
KOG1227	351	consensus Putative methyltransferase [General func	96.56
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	96.53
PRK10458	467	DNA cytosine methylase; Provisional	96.52
COG1565	370	Uncharacterized conserved protein [Function unknow	96.44
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.38
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.37
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.27
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	96.09
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.08
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.05
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	96.02
KOG2360	413	consensus Proliferation-associated nucleolar prote	96.0
COG1568	354	Predicted methyltransferases [General function pre	95.92
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	95.62
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	95.62
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	95.59
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	95.58
KOG1331	293	consensus Predicted methyltransferase [General fun	95.56
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	95.53
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.22
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	94.95
COG0863	302	DNA modification methylase [DNA replication, recom	94.92
KOG3924	419	consensus Putative protein methyltransferase invol	94.77
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	94.63
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	94.54
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	94.43
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	94.13
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	94.01
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.92
PTZ00357	1072	methyltransferase; Provisional	93.9
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.88
COG1255	129	Uncharacterized protein conserved in archaea [Func	93.85
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	93.72
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	93.45
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	93.37
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	93.29
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	92.42
KOG2352	482	consensus Predicted spermine/spermidine synthase [	92.28
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	91.99
COG2933	358	Predicted SAM-dependent methyltransferase [General	91.95
KOG2920	282	consensus Predicted methyltransferase [General fun	91.64
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	91.6
KOG2352	482	consensus Predicted spermine/spermidine synthase [	91.53
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	90.96
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	90.86
PRK05867	253	short chain dehydrogenase; Provisional	90.69
PRK07454	241	short chain dehydrogenase; Provisional	90.65
PRK07063	260	short chain dehydrogenase; Provisional	90.63
PRK03659	601	glutathione-regulated potassium-efflux system prot	90.32
PF04378	245	RsmJ: Ribosomal RNA small subunit methyltransferas	89.81
PRK05866	293	short chain dehydrogenase; Provisional	89.71
PRK10669	558	putative cation:proton antiport protein; Provision	89.68
PRK07814	263	short chain dehydrogenase; Provisional	89.52
PRK09496	453	trkA potassium transporter peripheral membrane com	89.28
PLN02668	386	indole-3-acetate carboxyl methyltransferase	89.2
PRK07035	252	short chain dehydrogenase; Provisional	89.01
PRK07062	265	short chain dehydrogenase; Provisional	88.89
PRK05876	275	short chain dehydrogenase; Provisional	88.64
PRK07576	264	short chain dehydrogenase; Provisional	88.51
PRK08251	248	short chain dehydrogenase; Provisional	88.44
PRK07890	258	short chain dehydrogenase; Provisional	88.37
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	88.33
COG0569	225	TrkA K+ transport systems, NAD-binding component [	88.24
PRK05854	313	short chain dehydrogenase; Provisional	88.23
COG4798	238	Predicted methyltransferase [General function pred	88.06
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	87.92
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	87.83
PRK07097	265	gluconate 5-dehydrogenase; Provisional	87.8
PRK07478	254	short chain dehydrogenase; Provisional	87.77
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	87.75
PRK07774	250	short chain dehydrogenase; Provisional	87.33
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	87.16
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	87.15
PRK08589	272	short chain dehydrogenase; Validated	87.12
KOG2782	303	consensus Putative SAM dependent methyltransferase	87.08
PRK08277	278	D-mannonate oxidoreductase; Provisional	86.86
PRK07109	334	short chain dehydrogenase; Provisional	86.83
PRK08303	305	short chain dehydrogenase; Provisional	86.62
PLN03209	576	translocon at the inner envelope of chloroplast su	86.54
COG2961	279	ComJ Protein involved in catabolism of external DN	86.36
PRK07791	286	short chain dehydrogenase; Provisional	86.32
PRK03562	621	glutathione-regulated potassium-efflux system prot	86.31
PRK07677	252	short chain dehydrogenase; Provisional	86.19
PRK06124	256	gluconate 5-dehydrogenase; Provisional	86.15
PRK08862	227	short chain dehydrogenase; Provisional	86.12
COG5379	414	BtaA S-adenosylmethionine:diacylglycerol 3-amino-3	85.86
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	85.61
PRK06197	306	short chain dehydrogenase; Provisional	85.54
PRK06139	330	short chain dehydrogenase; Provisional	85.46
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	85.28
PRK08267	260	short chain dehydrogenase; Provisional	85.19
PRK12939	250	short chain dehydrogenase; Provisional	85.06
PRK06949	258	short chain dehydrogenase; Provisional	84.95
PF07669	106	Eco57I: Eco57I restriction-modification methylase;	84.91
PRK06172	253	short chain dehydrogenase; Provisional	84.86
PRK06720	169	hypothetical protein; Provisional	84.43
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	84.3
PRK08213	259	gluconate 5-dehydrogenase; Provisional	84.15
PRK06125	259	short chain dehydrogenase; Provisional	84.02
PRK08085	254	gluconate 5-dehydrogenase; Provisional	83.98
PRK07523	255	gluconate 5-dehydrogenase; Provisional	83.77
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	83.74
PRK06914	280	short chain dehydrogenase; Provisional	83.7
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	83.59
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	83.56
PRK08339	263	short chain dehydrogenase; Provisional	83.55
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	82.87
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	82.66
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	82.3
PRK08703	239	short chain dehydrogenase; Provisional	82.25
PRK08265	261	short chain dehydrogenase; Provisional	82.09
PRK10310	94	PTS system galactitol-specific transporter subunit	82.04
PRK08340	259	glucose-1-dehydrogenase; Provisional	81.99
PRK07326	237	short chain dehydrogenase; Provisional	81.95
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	81.9
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	81.84
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	81.77
PRK06194	287	hypothetical protein; Provisional	81.5
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	81.31
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	81.24
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	81.12
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	81.07
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	80.95
PRK12829	264	short chain dehydrogenase; Provisional	80.9
KOG2811	420	consensus Uncharacterized conserved protein [Funct	80.83
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	80.83
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	80.58
COG4301	321	Uncharacterized conserved protein [Function unknow	80.4
PRK07102	243	short chain dehydrogenase; Provisional	80.1
PRK06196	315	oxidoreductase; Provisional	80.05
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	80.05

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.5e-53  Score=335.50  Aligned_cols=223  Identities=45%  Similarity=0.664  Sum_probs=204.9

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|++++++|++.+++.+++.|||||||.|++|..|++.+.+|+|+|+|+.+++.+++.+...   +|+
T Consensus         2 ~k~~K~~GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~   78 (259)
T COG0030           2 FRPNKRLGQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNL   78 (259)
T ss_pred             CCCCCCcccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cce
Confidence            46679999999999999999999999999999999999999999999999999999999999999999998632   689


Q ss_pred             EEEEcCCCCCCCC---CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeee
Q 047897           82 NVISKDALKTEFP---QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVAD  158 (232)
Q Consensus        82 ~~~~~D~~~~~~~---~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~  158 (232)
                      +++++|+++.+++   .++.|++|+||+++++++.+++........+++|+|+|+|+|++++||++.|+++++.++++++
T Consensus        79 ~vi~~DaLk~d~~~l~~~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~QkEva~Rl~A~pgsk~Yg~LsV~~q~~~~  158 (259)
T COG0030          79 TVINGDALKFDFPSLAQPYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQKEVAERLVAKPGSKDYGRLSVLVQYYAD  158 (259)
T ss_pred             EEEeCchhcCcchhhcCCCEEEEcCCCcccHHHHHHHHhccCccceEEEEeHHHHHHHHhCCCCCcccchhhhhhhheEE
Confidence            9999999999988   6899999999999999999999988777799999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCcccCCCccEEEEEEEeCCCCC--CCCHHHHHHHHHHhhcCCCchHHhhcCChHHHHHHHH
Q 047897          159 VEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIP--DVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLR  227 (232)
Q Consensus       159 ~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~--~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~~  227 (232)
                      ++.++++|+++|+|+|+|+|+++.+.+++..+  ..+.+.|..+++.+|.+|||+++|+++..-.+.+.|.
T Consensus       159 v~~~~~Vpp~~F~P~PkVdSavv~L~~~~~~~~~~~d~~~~~~~~~~~F~~RRKtl~n~l~~~~~~~~~l~  229 (259)
T COG0030         159 VEIVFDVPPSAFYPPPKVDSAVVRLVPKKEKPSPVKDEEKFFKFVKAAFSQRRKTLRNNLKNLFGLEEVLE  229 (259)
T ss_pred             EEEEEEEChhhCCCCCCccEEEEEEEeCCCCCCcccCHHHHHHHHHHHHhhhhHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999976543  3578999999999999999999999976433344443

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=100.00  E-value=4.1e-51  Score=334.46  Aligned_cols=218  Identities=59%  Similarity=0.880  Sum_probs=204.7

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++|||||+|+.+++.|++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+..+++
T Consensus         8 ~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v   87 (294)
T PTZ00338          8 MVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKL   87 (294)
T ss_pred             cCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcE
Confidence            47899999999999999999999999999999999999999999999998889999999999999999999876644689


Q ss_pred             EEEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEE
Q 047897           82 NVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF  161 (232)
Q Consensus        82 ~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~  161 (232)
                      +++++|+++.+.+.+|+|++|+||+++++++.+++.....+..+++|+|+|+|+|++++||++.|+.+++.++.+++++.
T Consensus        88 ~ii~~Dal~~~~~~~d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~QkEvA~Rl~A~pg~k~y~~LSv~~q~~~~~~~  167 (294)
T PTZ00338         88 EVIEGDALKTEFPYFDVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQKEFALRLLAQPGDELYCRLSVNTQLLCRVTH  167 (294)
T ss_pred             EEEECCHhhhcccccCEEEecCCcccCcHHHHHHHhcCCCCceeeeeehHHHHHHHhcCCCCcccCHHHHHHHHHhceEE
Confidence            99999999988888999999999999999999999877788899999999999999999999999999999999999999


Q ss_pred             EEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCCh
Q 047897          162 VMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQK  219 (232)
Q Consensus       162 ~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~  219 (232)
                      ++++|++.|.|+|+|+|+|+.+.|++..+..+++.|..+++.+|.+|||+|+++|++.
T Consensus       168 ~~~V~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~~~l~~~  225 (294)
T PTZ00338        168 LMKVSKNSFNPPPKVESSVVRIEPKNPPPDVDFEEWDGLLRICFSRKNKTLSAIFKTK  225 (294)
T ss_pred             EEEeCchhCCCCCCcEEEEEEEEECCCCCCcCHHHHHHHHHHHHhhccHHHHHHhCcc
Confidence            9999999999999999999999998765556788899999999999999999998763

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=100.00  E-value=3.7e-46  Score=304.16  Aligned_cols=223  Identities=40%  Similarity=0.609  Sum_probs=202.0

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|+.+++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++..    +++
T Consensus        14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v   89 (272)
T PRK00274         14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNL   89 (272)
T ss_pred             CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----Cce
Confidence            4679999999999999999999999988999999999999999999999777999999999999999988743    579


Q ss_pred             EEEEcCCCCCCCCC--cceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeee
Q 047897           82 NVISKDALKTEFPQ--FDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADV  159 (232)
Q Consensus        82 ~~~~~D~~~~~~~~--~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~  159 (232)
                      +++++|+.+++.+.  +|.|++|+||+++++++.+++.....+..+++++|+|+|+|++++||++.|+.++++++.++++
T Consensus        90 ~~i~~D~~~~~~~~~~~~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~QkE~A~Rl~a~pg~~~y~~lSv~~~~~~~~  169 (272)
T PRK00274         90 TIIEGDALKVDLSELQPLKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQKEVAERIVAKPGSKAYGRLSVLVQYYCDV  169 (272)
T ss_pred             EEEEChhhcCCHHHcCcceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeHHHHHHHHcCCCCCccccHHHHHHHHHcce
Confidence            99999999988765  4899999999999999999998776788899999999999999999999999999999999999


Q ss_pred             EEEEEecCCCcccCCCccEEEEEEEeCCCC--CCCCHHHHHHHHHHhhcCCCchHHhhcCC----hHHHHHHHHh
Q 047897          160 EFVMDVSKRDFLPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTLGATFKQ----KKKVIELLRL  228 (232)
Q Consensus       160 ~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~rrk~l~~~~~~----~~~~~~~~~~  228 (232)
                      +.+++++++.|.|+|+|+|+++.+.+++..  ...+.+.|..+++.+|.+|||++.++++.    .+.+.++|+.
T Consensus       170 ~~~~~v~~~~F~P~PkV~s~vv~l~~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~~~~~~~~~~~~l~~  244 (272)
T PRK00274        170 EKVFDVPPSAFVPPPKVDSAVVRLVPRKEPPVPVKDEELFFRVVKAAFAQRRKTLRNNLKNLFGSKEKLEEALEA  244 (272)
T ss_pred             EEEEEeChhhCCCCCCceEEEEEEEECCCCCCCcccHHHHHHHHHHHHhchHHHHHHHHHhhccchHHHHHHHHH
Confidence            999999999999999999999999997643  45677889999999999999999999875    2344555553

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=100.00  E-value=2.1e-45  Score=286.45  Aligned_cols=224  Identities=52%  Similarity=0.808  Sum_probs=213.4

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      +.++|.+|||++.++.+++.|++.+++++++.|||+|+|||.+|..+++.+++|+|+|+|+.|+....++........++
T Consensus        30 ~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kL  109 (315)
T KOG0820|consen   30 SKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKL  109 (315)
T ss_pred             cccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCcccee
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999876666789


Q ss_pred             EEEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEE
Q 047897           82 NVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF  161 (232)
Q Consensus        82 ~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~  161 (232)
                      ++++||+++.+++.||.+|+|+||+++++.+++++.+...+..+++|+|.|++.|+++.||...|.++++.+|.+..++.
T Consensus       110 qV~~gD~lK~d~P~fd~cVsNlPyqISSp~vfKLL~~~~~fr~AvlmfQ~Efa~RLva~pgd~~Ycrlsin~q~~a~v~~  189 (315)
T KOG0820|consen  110 QVLHGDFLKTDLPRFDGCVSNLPYQISSPLVFKLLLHRPVFRCAVLMFQREFALRLVARPGDSLYCRLSINVQLLARVTH  189 (315)
T ss_pred             eEEecccccCCCcccceeeccCCccccCHHHHHhcCCCCCcceeeeehhhhhhhhhccCCCCchhceeehhhHHhhcchh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCChHHHHHHH
Q 047897          162 VMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL  226 (232)
Q Consensus       162 ~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~~~~~~~~  226 (232)
                      +++++++.|.|+|+|+|++++++++...+..++.+|..+++.+|.+++|++...++..+ +.+.+
T Consensus       190 i~KVgknnFrPpPkVessvVriepk~P~pp~~~~ewdg~lri~F~rkNktl~a~fk~~~-v~~~i  253 (315)
T KOG0820|consen  190 IMKVGKNNFRPPPKVESSVVRIEPKNPRPPVDFHEWDGLLRICFLRKNKTLMAPFKSSS-VLQKI  253 (315)
T ss_pred             heeecccccCCCCccccceeEeecCCCCCccchHHHHHHHHHHHHHHhHHhhcchhhhH-HHHHh
Confidence            99999999999999999999999988888899999999999999999999999998876 44443

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=100.00  E-value=5.4e-45  Score=295.28  Aligned_cols=212  Identities=43%  Similarity=0.659  Sum_probs=195.0

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|+++++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++..  . +++
T Consensus         1 ~~~~k~~GQnfl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v   77 (258)
T PRK14896          1 IRMNKKLGQHFLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNV   77 (258)
T ss_pred             CCCCCcCCccccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCE
Confidence            5789999999999999999999999988999999999999999999999888999999999999999998864  2 579


Q ss_pred             EEEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEE
Q 047897           82 NVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF  161 (232)
Q Consensus        82 ~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~  161 (232)
                      +++++|+++.+++.+|.|++|+||+++++++.+++.  .....+.+++|+|+|+|++++||++.|+.+++..+.+++.+.
T Consensus        78 ~ii~~D~~~~~~~~~d~Vv~NlPy~i~s~~~~~l~~--~~~~~~~l~~q~e~A~rl~a~~g~~~yg~lsv~~~~~~~~~~  155 (258)
T PRK14896         78 EIIEGDALKVDLPEFNKVVSNLPYQISSPITFKLLK--HGFEPAVLMYQKEFAERMVAKPGTKEYGRLSVMVQYYADVEI  155 (258)
T ss_pred             EEEEeccccCCchhceEEEEcCCcccCcHHHHHHHh--hccceeEEEeeHHHHHHhcCCCCCccccHHHHHHHHHeeeEE
Confidence            999999999888889999999999999999988875  445668999999999999999999999999999999999999


Q ss_pred             EEEecCCCcccCCCccEEEEEEEeCCCC-CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          162 VMDVSKRDFLPCPKVDSSVVIIRPKAEI-PDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       162 ~~~~~~~~f~P~p~v~s~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      +..+++..|.|+|+|+|+++.+.+++.. ...+.+.|..+++.+|.+|||+++++++.
T Consensus       156 ~~~v~~~~F~P~PkV~s~vi~l~~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~  213 (258)
T PRK14896        156 VEKVPPGAFSPKPKVDSAVVRLTPREPKYEVYDEDFFDDFVKALFQHRRKTLRNALKN  213 (258)
T ss_pred             EEEeChHhCCCCCCceEEEEEEEECCCCCCCchHHHHHHHHHHHHccccHHHHHHHhh
Confidence            9999999999999999999999998732 23456779999999999999999999975

>TIGR00755 ksgA dimethyladenosine transferase

Probab=100.00  E-value=6.9e-45  Score=294.24  Aligned_cols=213  Identities=45%  Similarity=0.682  Sum_probs=197.6

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||+.|+++++.+++.++..++++|||||||+|.+|..+++.+.+|+++|+|+.+++.+++++..   .+++
T Consensus         1 ~~~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v   77 (253)
T TIGR00755         1 FRPRKSLGQNFLIDESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERL   77 (253)
T ss_pred             CCCCCCCCCccCCCHHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcE
Confidence            5789999999999999999999999988899999999999999999999888899999999999999988754   2579


Q ss_pred             EEEEcCCCCCCCCCcc---eeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeee
Q 047897           82 NVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVAD  158 (232)
Q Consensus        82 ~~~~~D~~~~~~~~~D---~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~  158 (232)
                      +++++|+++.+.+.+|   .|++|+||+++++++.+++. ......+++++|+|+|+|+++.||++.|+.+++.++.+++
T Consensus        78 ~v~~~D~~~~~~~~~d~~~~vvsNlPy~i~~~il~~ll~-~~~~~~~~~~~q~e~a~Rl~a~pg~~~y~~lsv~~~~~~~  156 (253)
T TIGR00755        78 EVIEGDALKVDLPDFPKQLKVVSNLPYNISSPLIFKLLE-KPKFRLAVLMVQKEVAERLTAKPGSKDYGRLSVLVQYFAN  156 (253)
T ss_pred             EEEECchhcCChhHcCCcceEEEcCChhhHHHHHHHHhc-cCCCceEEEEehHHHHHHHccCCCCCcccHHHHHHHHHcc
Confidence            9999999998877777   99999999999999999986 4567789999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          159 VEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       159 ~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      ++.++.++++.|+|+|+|+|+++.+.+++.....+.+.|..+++.+|.+|||+++++++.
T Consensus       157 ~~~~~~v~~~~F~P~PkVds~vv~l~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~l~~  216 (253)
T TIGR00755       157 VEIVFKVPPSAFYPPPKVDSAVVRLIPREQFPVKDIALFEKLLKAAFSQRRKTLRNNLKQ  216 (253)
T ss_pred             eEEEEEEchhhCcCCCCeeEEEEEEEECCCCCcccHHHHHHHHHHHHccchHHHHHHHhh
Confidence            999999999999999999999999999876555677889999999999999999999875

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=100.00  E-value=1.1e-42  Score=282.34  Aligned_cols=214  Identities=40%  Similarity=0.578  Sum_probs=191.8

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      .+++|++||||++|+++++.|++.+++.+++.|||||+|+|.+|..+++.+.+|+++|+|+.+++.+++++..   .+++
T Consensus         2 ~k~kk~~gQnFL~~~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~   78 (262)
T PF00398_consen    2 HKPKKSLGQNFLVDPNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNV   78 (262)
T ss_dssp             -SC-CGCTSSEEEHHHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSE
T ss_pred             CCCCCCCCcCeeCCHHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccc
Confidence            3689999999999999999999999999999999999999999999999889999999999999999998863   2689


Q ss_pred             EEEEcCCCCCCCCC-----cceeecccCcccchHHHHHHhc-CCCCccceEehhHHHHHHHHhcCCCCCcccchhheeee
Q 047897           82 NVISKDALKTEFPQ-----FDLVVANIPYGISSPLVAKLVY-GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKL  155 (232)
Q Consensus        82 ~~~~~D~~~~~~~~-----~D~Vi~n~p~~~~~~~l~~~~~-~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~  155 (232)
                      +++++|+++++...     ...|++|+||+++++++.+++. .......+.+++|+|+++|++++||++.|+.+++.++.
T Consensus        79 ~vi~~D~l~~~~~~~~~~~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~l~vq~e~a~rl~a~pg~~~~~~lsv~~q~  158 (262)
T PF00398_consen   79 EVINGDFLKWDLYDLLKNQPLLVVGNLPYNISSPILRKLLELYRFGRVRMVLMVQKEVAERLLAKPGSKRYSRLSVLAQA  158 (262)
T ss_dssp             EEEES-TTTSCGGGHCSSSEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEEEEEEHHHHHHHHTSTTSTTCSHHHHHHHH
T ss_pred             eeeecchhccccHHhhcCCceEEEEEecccchHHHHHHHhhcccccccceEEEEehhhhhhccCCCCCCccchhhhhhhh
Confidence            99999999987653     4589999999999999999987 34446889999999999999999999999999999999


Q ss_pred             eeeeEEEEEecCCCcccCCCccEEEEEEEeCCCC--CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          156 VADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       156 ~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      +++++.+..++++.|+|+|+|+|+++.+.|++..  +..+.+.|..+++.+|.+|||++.++++.
T Consensus       159 ~~~i~~l~~v~~~~F~P~PkVds~vv~l~p~~~~~~~~~~~~~~~~~~~~~F~~rrk~l~~~L~~  223 (262)
T PF00398_consen  159 FFDIKLLFKVPPSCFYPPPKVDSAVVRLTPKENPLIPPEDMDAFEYFVRQLFSQRRKTLRNSLKS  223 (262)
T ss_dssp             HEEEEEEEEE-GGGEESSSSS-EEEEEEEE-SSCSS-CSHHHHHHHHHHHHHTTTTSBHHHHTTC
T ss_pred             hhceeEecccCCccccCCCCCceEEEEEEECCCCCCcccCHHHHHHHHHHHHhCcchHHHHHHhh
Confidence            9999999999999999999999999999999875  35678899999999999999999999985

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=100.00  E-value=6.9e-35  Score=222.28  Aligned_cols=166  Identities=47%  Similarity=0.724  Sum_probs=153.7

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Cc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~   96 (232)
                      ++.+++.+++.++++|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++...   ++++++++|+++++.+  .+
T Consensus         2 ~~~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~   78 (169)
T smart00650        2 IDKIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQP   78 (169)
T ss_pred             HHHHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCC
Confidence            577888888888999999999999999999998889999999999999999998642   5799999999998765  48


Q ss_pred             ceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEEEEecCCCcccCCCc
Q 047897           97 DLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV  176 (232)
Q Consensus        97 D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~p~v  176 (232)
                      |.|++|+||+++++++.+++........+.+++|+|+++|++++||++.|+.++++++.+++++.+++++++.|+|+|+|
T Consensus        79 d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~q~e~a~rl~~~~~~~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~PkV  158 (169)
T smart00650       79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLMVQKEVARRLAAKPGSKDYGRLSVLLQPYFDVKILFKVPPEAFRPPPKV  158 (169)
T ss_pred             CEEEECCCcccHHHHHHHHHhcCCCcceEEEEEEHHHhHHhcCCCCCCcccHHHHHHHHHeeEEEEEEEChhhCCCCCCc
Confidence            99999999999999999999876666889999999999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEEEeCC
Q 047897          177 DSSVVIIRPKA  187 (232)
Q Consensus       177 ~s~~~~~~~~~  187 (232)
                      +|+++.+++++
T Consensus       159 ~s~~~~~~~~~  169 (169)
T smart00650      159 DSAVVRLERRP  169 (169)
T ss_pred             eEEEEEEEECc
Confidence            99999999863

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=99.94  E-value=5.3e-26  Score=173.08  Aligned_cols=212  Identities=25%  Similarity=0.393  Sum_probs=181.4

Q ss_pred             cccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      +.+|-++||||.|.++.++|+..++.-.++-|+|||+|+|++|..+++ ...++..+|+|+.+++-++...+...  .++
T Consensus        23 qA~K~LSQNfLMD~~lT~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~  100 (326)
T KOG0821|consen   23 QAAKQLSQNFLMDLRLTDKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKL  100 (326)
T ss_pred             HHHHHHhHhHHhhhHHHHHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cce
Confidence            567889999999999999999999887888999999999999999998 45799999999999988877666433  589


Q ss_pred             EEEEcCCCCCCCC---------C-----c-ceeecccCcccchHHHHHHhcCC----CC----ccceEehhHHHHHHHHh
Q 047897           82 NVISKDALKTEFP---------Q-----F-DLVVANIPYGISSPLVAKLVYGT----KS----FRSATLLLQKEFARRLL  138 (232)
Q Consensus        82 ~~~~~D~~~~~~~---------~-----~-D~Vi~n~p~~~~~~~l~~~~~~~----~~----~~~~~~~~q~e~~~rl~  138 (232)
                      .+.++|++.+..+         +     . -.||+|+||++++|++.+++...    ..    -..+.+.+|.|+|+|+.
T Consensus       101 ~IHh~D~LR~~I~~~~~~~~~Rpw~d~~p~~H~IGNLPf~i~~pliik~l~~~s~r~G~~~ygrt~mTLTFQ~EVAeRlC  180 (326)
T KOG0821|consen  101 RIHHGDVLRFKIEKAFSESLKRPWEDDPPNVHIIGNLPFSVSTPLIIKWLENISCRDGPFVYGRTQMTLTFQKEVAERLC  180 (326)
T ss_pred             EEeccccceehHHhhcchhhcCCcccCCCceEEeccCCccccchHHHHHHhhcccccCCeeecceeeEEehHHHHHHHhc
Confidence            9999999876432         1     1 26999999999999998887532    22    23567889999999999


Q ss_pred             cCCCCCcccchhheeeeeeeeEEEEEecCCCcccCCCccEEEEEEEeCCCCC-CCCHHHHHHHHHHhhcCCCchHHhhc
Q 047897          139 ASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIP-DVNLDEWRAFTRTCFSKKNKTLGATF  216 (232)
Q Consensus       139 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~rrk~l~~~~  216 (232)
                      ++.|+...+++|+..|.+++...++.+|-++|.|.|.|+-+|+++.|..... ...|+..+++++..|..|.|....-+
T Consensus       181 aP~~~~qRsRlSvMSQy~~EP~M~FtI~G~~FVPkPQVDVGVV~f~P~K~P~~~~~F~lvEkV~R~vF~~RQKY~~rGl  259 (326)
T KOG0821|consen  181 APTGSKQRSRLSVMSQYLCEPRMIFTIPGQAFVPKPQVDVGVVHFTPLKQPKIEQPFKLVEKVVRNVFQFRQKYCHRGL  259 (326)
T ss_pred             ccccccchhhHHHHHHHhcCceEEEEecCccccCCCcceeeeEEeeecCCccccCCHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999999999999999877654 56788899999999999987654433

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=3.2e-15  Score=112.30  Aligned_cols=137  Identities=23%  Similarity=0.260  Sum_probs=101.9

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGF   77 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~   77 (232)
                      .+++-.+-| |.++..++..|+..+.   .-.|..|+|+|||+|.++...+-.+ .+|+|+|+|+++++.+++|....+ 
T Consensus        15 ~~p~~~LEQ-Y~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~-   92 (198)
T COG2263          15 PNPKLGLEQ-YRTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL-   92 (198)
T ss_pred             CCCCcccee-cCCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC-
Confidence            345556666 8889999999887653   3357789999999999999988854 899999999999999999998843 


Q ss_pred             CccEEEEEcCCCCCCCCCcceeecccCcccc-----hHHHHHHhcCCCCccceEehhHHHHHHHHhcCCC
Q 047897           78 HDRLNVISKDALKTEFPQFDLVVANIPYGIS-----SPLVAKLVYGTKSFRSATLLLQKEFARRLLASPG  142 (232)
Q Consensus        78 ~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~-----~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g  142 (232)
                       ++++++.+|+.++.. .+|.++.||||+..     .+.+.+.++.........-.--.++.++....-|
T Consensus        93 -g~v~f~~~dv~~~~~-~~dtvimNPPFG~~~rhaDr~Fl~~Ale~s~vVYsiH~a~~~~f~~~~~~~~G  160 (198)
T COG2263          93 -GDVEFVVADVSDFRG-KFDTVIMNPPFGSQRRHADRPFLLKALEISDVVYSIHKAGSRDFVEKFAADLG  160 (198)
T ss_pred             -CceEEEEcchhhcCC-ccceEEECCCCccccccCCHHHHHHHHHhhheEEEeeccccHHHHHHHHHhcC
Confidence             689999999988863 67899999999865     4556665554433332222223455555555444

>PHA03412 putative methyltransferase; Provisional

Probab=99.66  E-value=4.6e-16  Score=122.16  Aligned_cols=97  Identities=21%  Similarity=0.411  Sum_probs=80.1

Q ss_pred             ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-----CCeEEEEEcCHHHHHHHHHHHhhcCCC
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-----SKKVHAIEIDERMVEILNRRAADSGFH   78 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~   78 (232)
                      -+++.|| |.+++.+++.++...  ..+.+|||+|||+|.++..+++.     ..+|+|+|+|+.+++.|+++.      
T Consensus        26 ~~~~~Gq-FfTP~~iAr~~~i~~--~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------   96 (241)
T PHA03412         26 NNSELGA-FFTPIGLARDFTIDA--CTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------   96 (241)
T ss_pred             ccccCCc-cCCCHHHHHHHHHhc--cCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------
Confidence            3678888 888889988876332  24679999999999999988762     458999999999999999886      


Q ss_pred             ccEEEEEcCCCCCCCC-CcceeecccCcccch
Q 047897           79 DRLNVISKDALKTEFP-QFDLVVANIPYGISS  109 (232)
Q Consensus        79 ~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~~  109 (232)
                      .++.++++|+...+.. +||+||+||||....
T Consensus        97 ~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412         97 PEATWINADALTTEFDTLFDMAISNPPFGKIK  128 (241)
T ss_pred             cCCEEEEcchhcccccCCccEEEECCCCCCcc
Confidence            3588999999876544 899999999998754

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.65  E-value=4.3e-16  Score=123.28  Aligned_cols=100  Identities=27%  Similarity=0.421  Sum_probs=82.6

Q ss_pred             cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897            9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK   86 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (232)
                      |.+|-+|--++...+   ......+|||+|||+|.++..++++  ..+++|||+++++++.|+++...++++++++++++
T Consensus        26 ~~~~~~DaiLL~~~~---~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~  102 (248)
T COG4123          26 GFRYGTDAILLAAFA---PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEA  102 (248)
T ss_pred             ccccccHHHHHHhhc---ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehh
Confidence            445556555555444   3345789999999999999999984  38999999999999999999999999999999999


Q ss_pred             CCCCCCC----CCcceeecccCcccchHH
Q 047897           87 DALKTEF----PQFDLVVANIPYGISSPL  111 (232)
Q Consensus        87 D~~~~~~----~~~D~Vi~n~p~~~~~~~  111 (232)
                      |+.++..    .+||+|+|||||+.....
T Consensus       103 Di~~~~~~~~~~~fD~Ii~NPPyf~~~~~  131 (248)
T COG4123         103 DIKEFLKALVFASFDLIICNPPYFKQGSR  131 (248)
T ss_pred             hHHHhhhcccccccCEEEeCCCCCCCccc
Confidence            9988753    269999999999876443

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=1.6e-15  Score=116.64  Aligned_cols=94  Identities=26%  Similarity=0.395  Sum_probs=83.6

Q ss_pred             CCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897            7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK   86 (232)
Q Consensus         7 ~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (232)
                      ..||.. ..|.+...|++.++++++++|||||||+|+.+..+++...+|+++|.++.+.+.|++++...|+ .|+.++++
T Consensus        50 ~~gqti-s~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~-~nV~v~~g  127 (209)
T COG2518          50 GCGQTI-SAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGY-ENVTVRHG  127 (209)
T ss_pred             CCCcee-cCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCC-CceEEEEC
Confidence            356744 4589999999999999999999999999999999999888999999999999999999999998 47999999


Q ss_pred             CCCCCCC--CCcceeecc
Q 047897           87 DALKTEF--PQFDLVVAN  102 (232)
Q Consensus        87 D~~~~~~--~~~D~Vi~n  102 (232)
                      |...-..  .+||.|+..
T Consensus       128 DG~~G~~~~aPyD~I~Vt  145 (209)
T COG2518         128 DGSKGWPEEAPYDRIIVT  145 (209)
T ss_pred             CcccCCCCCCCcCEEEEe
Confidence            9987532  489988864

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.58  E-value=1.7e-14  Score=102.11  Aligned_cols=74  Identities=36%  Similarity=0.680  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC-CCCCC-CCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA-LKTEF-PQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~-~~~~~-~~~D~Vi~n~  103 (232)
                      |+.+|||+|||+|.++..+++  .+.+|+|+|+|+++++.+++++...+..++++++++|+ ..... ++||+|+++.
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence            578999999999999999999  88999999999999999999996666668999999999 44444 3799999865

...

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.56  E-value=7.8e-14  Score=109.46  Aligned_cols=96  Identities=19%  Similarity=0.291  Sum_probs=80.5

Q ss_pred             CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897            8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI   84 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   84 (232)
                      .|+.+ ..+.+.+.+++.+++.++++|||+|||+|..+..+++.   ..+|+++|+++++++.+++++...++.++++++
T Consensus        51 ~~~~~-~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~  129 (205)
T PRK13944         51 AGATI-SAPHMVAMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVY  129 (205)
T ss_pred             CCCEe-chHHHHHHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            34444 34788999999999889999999999999999888873   469999999999999999999888775579999


Q ss_pred             EcCCCCCCC--CCcceeecccC
Q 047897           85 SKDALKTEF--PQFDLVVANIP  104 (232)
Q Consensus        85 ~~D~~~~~~--~~~D~Vi~n~p  104 (232)
                      ++|+.+...  .+||.|+++.+
T Consensus       130 ~~d~~~~~~~~~~fD~Ii~~~~  151 (205)
T PRK13944        130 HGDGKRGLEKHAPFDAIIVTAA  151 (205)
T ss_pred             ECCcccCCccCCCccEEEEccC
Confidence            999987432  37999998754

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.56  E-value=6.2e-14  Score=110.87  Aligned_cols=92  Identities=24%  Similarity=0.316  Sum_probs=79.5

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      .+..|.+.+.+++.+++.++++|||||||+|.++..+++..   .+|+++|+++++++.|++++...++ ++++++++|+
T Consensus        59 ~~~~p~~~~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~  137 (215)
T TIGR00080        59 TISAPHMVAMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDG  137 (215)
T ss_pred             EechHHHHHHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCc
Confidence            34558899999999999999999999999999999998843   4599999999999999999999887 5899999999


Q ss_pred             CCCCC--CCcceeecccC
Q 047897           89 LKTEF--PQFDLVVANIP  104 (232)
Q Consensus        89 ~~~~~--~~~D~Vi~n~p  104 (232)
                      .+...  .+||+|+++.+
T Consensus       138 ~~~~~~~~~fD~Ii~~~~  155 (215)
T TIGR00080       138 TQGWEPLAPYDRIYVTAA  155 (215)
T ss_pred             ccCCcccCCCCEEEEcCC
Confidence            87533  37999998654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.56  E-value=2.9e-14  Score=108.65  Aligned_cols=88  Identities=26%  Similarity=0.496  Sum_probs=70.1

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcc
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFD   97 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D   97 (232)
                      -+++.+...++.+|||+|||+|.++..++...  .+|+++|+++.+++.+++++..++++. ++++++|..+... .+||
T Consensus        22 lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD  100 (170)
T PF05175_consen   22 LLLDNLPKHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFD  100 (170)
T ss_dssp             HHHHHHHHHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEE
T ss_pred             HHHHHHhhccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccccccccee
Confidence            33444443367799999999999999999954  369999999999999999999998854 9999999987544 5899


Q ss_pred             eeecccCcccch
Q 047897           98 LVVANIPYGISS  109 (232)
Q Consensus        98 ~Vi~n~p~~~~~  109 (232)
                      +|++|||++...
T Consensus       101 ~Iv~NPP~~~~~  112 (170)
T PF05175_consen  101 LIVSNPPFHAGG  112 (170)
T ss_dssp             EEEE---SBTTS
T ss_pred             EEEEccchhccc
Confidence            999999976654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=1.6e-14  Score=114.36  Aligned_cols=87  Identities=26%  Similarity=0.479  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      ..+-+.+++.+...+|.+|||+|||||.++..+++..  ++|+|+|+++.|++.++++....+.. +++++++|++++|+
T Consensus        37 ~~Wr~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~-~i~fv~~dAe~LPf  115 (238)
T COG2226          37 RLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQ-NVEFVVGDAENLPF  115 (238)
T ss_pred             HHHHHHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCcc-ceEEEEechhhCCC
Confidence            4455566666766689999999999999999999944  89999999999999999999987764 49999999999998


Q ss_pred             C--Ccceeeccc
Q 047897           94 P--QFDLVVANI  103 (232)
Q Consensus        94 ~--~~D~Vi~n~  103 (232)
                      +  +||.|.+..
T Consensus       116 ~D~sFD~vt~~f  127 (238)
T COG2226         116 PDNSFDAVTISF  127 (238)
T ss_pred             CCCccCEEEeee
Confidence            7  899998753

>PHA03411 putative methyltransferase; Provisional

Probab=99.55  E-value=2.9e-14  Score=114.53  Aligned_cols=92  Identities=23%  Similarity=0.390  Sum_probs=76.3

Q ss_pred             CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE
Q 047897            8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS   85 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (232)
                      .|| |++++.++..++.  ......+|||+|||+|.++..++..  ..+|+|+|+++.+++.+++++      +++++++
T Consensus        45 ~G~-FfTP~~i~~~f~~--~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~  115 (279)
T PHA03411         45 SGA-FFTPEGLAWDFTI--DAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWIT  115 (279)
T ss_pred             cee-EcCCHHHHHHHHh--ccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEE
Confidence            577 8888888866642  3345679999999999999988773  579999999999999999874      3688999


Q ss_pred             cCCCCCCCC-CcceeecccCcccc
Q 047897           86 KDALKTEFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        86 ~D~~~~~~~-~~D~Vi~n~p~~~~  108 (232)
                      +|+.++..+ .||+|++|+||+..
T Consensus       116 ~D~~e~~~~~kFDlIIsNPPF~~l  139 (279)
T PHA03411        116 SDVFEFESNEKFDVVISNPPFGKI  139 (279)
T ss_pred             CchhhhcccCCCcEEEEcCCcccc
Confidence            999987643 79999999999874

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.55  E-value=1.5e-13  Score=108.34  Aligned_cols=93  Identities=24%  Similarity=0.319  Sum_probs=80.6

Q ss_pred             CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897            8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI   84 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   84 (232)
                      .||+ +..|.+...+++.+++.++++|||||||+|+++..+++.   ..+|+++|+++++++.+++++...+. ++++++
T Consensus        55 ~g~~-~~~p~~~~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~  132 (212)
T PRK13942         55 YGQT-ISAIHMVAIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVI  132 (212)
T ss_pred             CCCE-eCcHHHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEE
Confidence            4564 456999999999999999999999999999999888873   36999999999999999999998887 589999


Q ss_pred             EcCCCCCCC--CCcceeecc
Q 047897           85 SKDALKTEF--PQFDLVVAN  102 (232)
Q Consensus        85 ~~D~~~~~~--~~~D~Vi~n  102 (232)
                      ++|+.....  .+||+|+++
T Consensus       133 ~gd~~~~~~~~~~fD~I~~~  152 (212)
T PRK13942        133 VGDGTLGYEENAPYDRIYVT  152 (212)
T ss_pred             ECCcccCCCcCCCcCEEEEC
Confidence            999976543  479999875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.55  E-value=5.8e-14  Score=117.88  Aligned_cols=96  Identities=24%  Similarity=0.301  Sum_probs=85.8

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ..++.+.+.+++.+.+.++++|||+|||+|.++..++..+.+++|+|+|+.+++.+++|+...++. ++.++++|+.+++
T Consensus       165 ~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~-~i~~~~~D~~~l~  243 (329)
T TIGR01177       165 SMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIE-DFFVKRGDATKLP  243 (329)
T ss_pred             CCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCC-CCeEEecchhcCC
Confidence            346889999999888889999999999999999988888899999999999999999999988884 4899999999987


Q ss_pred             C--CCcceeecccCcccch
Q 047897           93 F--PQFDLVVANIPYGISS  109 (232)
Q Consensus        93 ~--~~~D~Vi~n~p~~~~~  109 (232)
                      .  ..||.|++|+||+...
T Consensus       244 ~~~~~~D~Iv~dPPyg~~~  262 (329)
T TIGR01177       244 LSSESVDAIATDPPYGRST  262 (329)
T ss_pred             cccCCCCEEEECCCCcCcc
Confidence            6  3799999999998753

This family is found exclusively in the Archaea.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.52  E-value=1.6e-14  Score=103.13  Aligned_cols=78  Identities=37%  Similarity=0.592  Sum_probs=67.7

Q ss_pred             CCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCcceeecccCc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQFDLVVANIPY  105 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~D~Vi~n~p~  105 (232)
                      |.+|||+|||+|.++..+++.+ .+++|+|+|+..++.++.++...+..++++++++|+.+..    ..+||+|++|+||
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            5689999999999999999977 9999999999999999999999888778999999998764    3489999999999


Q ss_pred             ccc
Q 047897          106 GIS  108 (232)
Q Consensus       106 ~~~  108 (232)
                      ...
T Consensus        81 ~~~   83 (117)
T PF13659_consen   81 GPR   83 (117)
T ss_dssp             TSB
T ss_pred             ccc
Confidence            754

...

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.52  E-value=5.9e-13  Score=116.04  Aligned_cols=101  Identities=25%  Similarity=0.309  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---   92 (232)
                      +.+++.+++.+.+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++ ++++++.+|+.+..   
T Consensus       283 e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~  361 (443)
T PRK13168        283 QKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQ  361 (443)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhh
Confidence            34555666667777888999999999999999999888999999999999999999998887 47999999997531   


Q ss_pred             ---CCCcceeecccCcccchHHHHHHhc
Q 047897           93 ---FPQFDLVVANIPYGISSPLVAKLVY  117 (232)
Q Consensus        93 ---~~~~D~Vi~n~p~~~~~~~l~~~~~  117 (232)
                         ..+||+|++|+|+....+.+..+..
T Consensus       362 ~~~~~~fD~Vi~dPPr~g~~~~~~~l~~  389 (443)
T PRK13168        362 PWALGGFDKVLLDPPRAGAAEVMQALAK  389 (443)
T ss_pred             hhhcCCCCEEEECcCCcChHHHHHHHHh
Confidence               2369999999999876666655544

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.51  E-value=5.1e-14  Score=115.17  Aligned_cols=76  Identities=26%  Similarity=0.497  Sum_probs=67.9

Q ss_pred             EEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccch
Q 047897           33 TVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISS  109 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~  109 (232)
                      +|||+|||+|.++..++...  .+|+|+|+|+.+++.|++|+..+++ .++.++++|..+.-.+.||+|++||||-..+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~  190 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAE  190 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCCceeEEEeCCCCCCCc
Confidence            79999999999999999843  5999999999999999999999998 6788888888776556999999999997665

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.50  E-value=2.2e-13  Score=111.98  Aligned_cols=81  Identities=22%  Similarity=0.441  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPY  105 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~  105 (232)
                      .++.+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|++++...++.++++++++|+.+. +...||+|++||||
T Consensus       120 ~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy  199 (284)
T TIGR03533       120 EPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPY  199 (284)
T ss_pred             CCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCC
Confidence            34578999999999999999983  5799999999999999999999888766899999998653 32379999999999


Q ss_pred             ccch
Q 047897          106 GISS  109 (232)
Q Consensus       106 ~~~~  109 (232)
                      ....
T Consensus       200 ~~~~  203 (284)
T TIGR03533       200 VDAE  203 (284)
T ss_pred             CCcc
Confidence            7654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.50  E-value=2.6e-13  Score=101.52  Aligned_cols=78  Identities=26%  Similarity=0.508  Sum_probs=67.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--C-CCcceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--F-PQFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~-~~~D~Vi~n  102 (232)
                      +++.+|||+|||+|.++..+++   .+.+++|+|+++++++.|++++...+++ +++++++|+.+++  + ..||+|+++
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~   80 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISN   80 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEE
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEc
Confidence            4678999999999999999994   4689999999999999999999988884 8999999999977  5 489999998


Q ss_pred             cCccc
Q 047897          103 IPYGI  107 (232)
Q Consensus       103 ~p~~~  107 (232)
                      .+++.
T Consensus        81 ~~l~~   85 (152)
T PF13847_consen   81 GVLHH   85 (152)
T ss_dssp             STGGG
T ss_pred             Cchhh
Confidence            76533

...

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.50  E-value=1.9e-13  Score=105.02  Aligned_cols=86  Identities=28%  Similarity=0.342  Sum_probs=72.7

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeec
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA  101 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~  101 (232)
                      +.+.+...++++|||+|||+|.++..++..+.+|+++|+++.+++.+++++...+.  +++++.+|+.+...++||+|++
T Consensus        11 l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~fD~Vi~   88 (179)
T TIGR00537        11 LEANLRELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVRGKFDVILF   88 (179)
T ss_pred             HHHHHHhcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccCCcccEEEE
Confidence            33444445667899999999999999999777999999999999999999987764  5899999998766668999999


Q ss_pred             ccCcccch
Q 047897          102 NIPYGISS  109 (232)
Q Consensus       102 n~p~~~~~  109 (232)
                      |+||+...
T Consensus        89 n~p~~~~~   96 (179)
T TIGR00537        89 NPPYLPLE   96 (179)
T ss_pred             CCCCCCCc
Confidence            99997553

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.49  E-value=2.6e-13  Score=104.09  Aligned_cols=96  Identities=21%  Similarity=0.309  Sum_probs=76.1

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCe---------EEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKK---------VHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~---------v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      -.++.++..|+..+++++++.|||.-||+|.+..+.+.  ....         ++|.|+|+.+++.+++|+...++...+
T Consensus        11 ~L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i   90 (179)
T PF01170_consen   11 PLRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI   90 (179)
T ss_dssp             SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred             CCCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence            34589999999999999999999999999999988766  3333         889999999999999999999987889


Q ss_pred             EEEEcCCCCCCC--CCcceeecccCcccc
Q 047897           82 NVISKDALKTEF--PQFDLVVANIPYGIS  108 (232)
Q Consensus        82 ~~~~~D~~~~~~--~~~D~Vi~n~p~~~~  108 (232)
                      .+.++|+.+++.  +.+|.|++|+||+..
T Consensus        91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r  119 (179)
T PF01170_consen   91 DFIQWDARELPLPDGSVDAIVTNPPYGRR  119 (179)
T ss_dssp             EEEE--GGGGGGTTSBSCEEEEE--STTS
T ss_pred             EEEecchhhcccccCCCCEEEECcchhhh
Confidence            999999999884  378999999999865

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.49  E-value=3.1e-13  Score=114.36  Aligned_cols=90  Identities=20%  Similarity=0.259  Sum_probs=74.1

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCC--ccEEEEEcCCCCCC-C
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFH--DRLNVISKDALKTE-F   93 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~-~   93 (232)
                      .+.+++.++...+.+|||+|||+|.++..+++  +..+|+++|+|+.+++.+++++..++.+  .+++++.+|+.+.. .
T Consensus       217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~  296 (378)
T PRK15001        217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP  296 (378)
T ss_pred             HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence            44566777655567999999999999999988  3579999999999999999999876542  37899999987643 3


Q ss_pred             CCcceeecccCcccc
Q 047897           94 PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~  108 (232)
                      .+||+|++|+||+..
T Consensus       297 ~~fDlIlsNPPfh~~  311 (378)
T PRK15001        297 FRFNAVLCNPPFHQQ  311 (378)
T ss_pred             CCEEEEEECcCcccC
Confidence            389999999999865

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.49  E-value=2.9e-13  Score=105.94  Aligned_cols=94  Identities=26%  Similarity=0.411  Sum_probs=75.6

Q ss_pred             cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE
Q 047897            9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS   85 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (232)
                      |+ .+..|.+...+++.++++++++|||||||+|++|..++.   ...+|+++|+++.+++.|++++...+. .|+.+++
T Consensus        52 ~~-~is~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~  129 (209)
T PF01135_consen   52 GQ-TISAPSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVV  129 (209)
T ss_dssp             TE-EE--HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEE
T ss_pred             ee-echHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEE
Confidence            44 445699999999999999999999999999999999998   235799999999999999999999887 5899999


Q ss_pred             cCCCCCCC--CCcceeecccC
Q 047897           86 KDALKTEF--PQFDLVVANIP  104 (232)
Q Consensus        86 ~D~~~~~~--~~~D~Vi~n~p  104 (232)
                      +|......  .+||.|+++..
T Consensus       130 gdg~~g~~~~apfD~I~v~~a  150 (209)
T PF01135_consen  130 GDGSEGWPEEAPFDRIIVTAA  150 (209)
T ss_dssp             S-GGGTTGGG-SEEEEEESSB
T ss_pred             cchhhccccCCCcCEEEEeec
Confidence            99876432  38999997643

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.48  E-value=1.2e-13  Score=110.04  Aligned_cols=87  Identities=26%  Similarity=0.512  Sum_probs=60.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +.+.+.+++.+...++.+|||+|||+|.++..+++.   ..+|+|+|++++|++.++++....+. .+++++++|++++|
T Consensus        33 ~~wr~~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~-~~i~~v~~da~~lp  111 (233)
T PF01209_consen   33 RRWRRKLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGL-QNIEFVQGDAEDLP  111 (233)
T ss_dssp             ----SHHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--
T ss_pred             HHHHHHHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCC-CCeeEEEcCHHHhc
Confidence            444556666667788999999999999999999873   46999999999999999999998776 48999999999988


Q ss_pred             CC--Ccceeeccc
Q 047897           93 FP--QFDLVVANI  103 (232)
Q Consensus        93 ~~--~~D~Vi~n~  103 (232)
                      ++  +||.|++..
T Consensus       112 ~~d~sfD~v~~~f  124 (233)
T PF01209_consen  112 FPDNSFDAVTCSF  124 (233)
T ss_dssp             S-TT-EEEEEEES
T ss_pred             CCCCceeEEEHHh
Confidence            75  799999754

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.48  E-value=2.3e-13  Score=115.47  Aligned_cols=79  Identities=24%  Similarity=0.408  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeeccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~  103 (232)
                      .++.+|||+|||+|.++..++.  ...+|+|+|+|+.+++.|++|+...+.  +++++++|+.+...   .+||+|++||
T Consensus       250 ~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl~e~~l~~~~~FDLIVSNP  327 (423)
T PRK14966        250 PENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSWFDTDMPSEGKWDIIVSNP  327 (423)
T ss_pred             CCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcchhccccccCCCccEEEECC
Confidence            4567999999999999999886  468999999999999999999988763  79999999976432   3799999999


Q ss_pred             Ccccch
Q 047897          104 PYGISS  109 (232)
Q Consensus       104 p~~~~~  109 (232)
                      ||....
T Consensus       328 PYI~~~  333 (423)
T PRK14966        328 PYIENG  333 (423)
T ss_pred             CCCCcc
Confidence            997653

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.48  E-value=4.2e-13  Score=110.45  Aligned_cols=79  Identities=22%  Similarity=0.394  Sum_probs=69.1

Q ss_pred             CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCcccc
Q 047897           32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~  108 (232)
                      .+|||+|||+|.++..++.  ...+|+|+|+|+.+++.|++++...++..+++++++|+.+.... +||+|++|+||...
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            6899999999999999998  34799999999999999999999888755699999999874333 79999999999876


Q ss_pred             hH
Q 047897          109 SP  110 (232)
Q Consensus       109 ~~  110 (232)
                      ..
T Consensus       196 ~~  197 (284)
T TIGR00536       196 ED  197 (284)
T ss_pred             ch
Confidence            54

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.47  E-value=7.9e-13  Score=102.76  Aligned_cols=92  Identities=20%  Similarity=0.266  Sum_probs=73.8

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           16 QRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        16 ~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      ..+.+.+++.+. ..++.+|||+|||+|.++..++. ...+|+++|+++.+++.+++|+...+. .+++++++|+.+.. 
T Consensus        38 d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~  116 (199)
T PRK10909         38 DRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLA  116 (199)
T ss_pred             HHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHh
Confidence            445555666553 24678999999999999997554 557999999999999999999998887 47999999997642 


Q ss_pred             --CCCcceeecccCcccc
Q 047897           93 --FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~  108 (232)
                        ..+||+|++||||...
T Consensus       117 ~~~~~fDlV~~DPPy~~g  134 (199)
T PRK10909        117 QPGTPHNVVFVDPPFRKG  134 (199)
T ss_pred             hcCCCceEEEECCCCCCC
Confidence              2369999999998654

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=1e-12  Score=103.50  Aligned_cols=115  Identities=24%  Similarity=0.284  Sum_probs=94.6

Q ss_pred             cccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897            3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHD   79 (232)
Q Consensus         3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~   79 (232)
                      +..|+-.|-.+  |.-+..|+..+++.+|++|+|.|.|+|.+|..|+.   ...+|+.+|+.+++++.|++|++..++.+
T Consensus        69 ~~~~R~tQiIy--PKD~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d  146 (256)
T COG2519          69 LSMKRRTQIIY--PKDAGYIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGD  146 (256)
T ss_pred             HhCcCCCceec--CCCHHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhcccc
Confidence            34455566544  66778889999999999999999999999999997   45899999999999999999999999977


Q ss_pred             cEEEEEcCCCCCCCC-CcceeecccCcccch-HHHHHHhcCC
Q 047897           80 RLNVISKDALKTEFP-QFDLVVANIPYGISS-PLVAKLVYGT  119 (232)
Q Consensus        80 ~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~~-~~l~~~~~~~  119 (232)
                      ++++..+|+.+...+ .+|.|+.++|-.|.. +-+...+...
T Consensus       147 ~v~~~~~Dv~~~~~~~~vDav~LDmp~PW~~le~~~~~Lkpg  188 (256)
T COG2519         147 RVTLKLGDVREGIDEEDVDAVFLDLPDPWNVLEHVSDALKPG  188 (256)
T ss_pred             ceEEEeccccccccccccCEEEEcCCChHHHHHHHHHHhCCC
Confidence            799999999987655 899999999977762 3334444433

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.47  E-value=2.3e-13  Score=106.09  Aligned_cols=83  Identities=19%  Similarity=0.316  Sum_probs=70.6

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceee
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVV  100 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi  100 (232)
                      +++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....++ .++++..+|+.+.+.+ +||+|+
T Consensus        22 l~~~l~~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~fD~I~  100 (197)
T PRK11207         22 VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFDGEYDFIL  100 (197)
T ss_pred             HHHhcccCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcCCCcCEEE
Confidence            34445555678999999999999999999889999999999999999999988777 4689999999877654 799999


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      ++..+
T Consensus       101 ~~~~~  105 (197)
T PRK11207        101 STVVL  105 (197)
T ss_pred             Eecch
Confidence            87654

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=3.7e-13  Score=108.86  Aligned_cols=93  Identities=23%  Similarity=0.373  Sum_probs=78.1

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      .+-+++.++...+.+|||+|||.|.++..+++  +..+++.+|+|..+++.+++|+..++.+ +..+..+|..+--.++|
T Consensus       147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~~v~~kf  225 (300)
T COG2813         147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYEPVEGKF  225 (300)
T ss_pred             HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccccccccc
Confidence            34566777777677999999999999999999  4579999999999999999999998874 44788888877666699


Q ss_pred             ceeecccCcccchHHH
Q 047897           97 DLVVANIPYGISSPLV  112 (232)
Q Consensus        97 D~Vi~n~p~~~~~~~l  112 (232)
                      |.|++|||||......
T Consensus       226 d~IisNPPfh~G~~v~  241 (300)
T COG2813         226 DLIISNPPFHAGKAVV  241 (300)
T ss_pred             cEEEeCCCccCCcchh
Confidence            9999999998775443

>PRK14967 putative methyltransferase; Provisional

Probab=99.46  E-value=4.8e-13  Score=106.37  Aligned_cols=93  Identities=26%  Similarity=0.423  Sum_probs=76.6

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      +..++..++....+.++++|||+|||+|.++..++..+ .+++++|+|+.+++.+++++...+.  ++.++++|+.+.. 
T Consensus        21 ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~   98 (223)
T PRK14967         21 DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVE   98 (223)
T ss_pred             cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhcc
Confidence            44455566666667788999999999999999988854 4999999999999999999987765  5889999997642 


Q ss_pred             CCCcceeecccCcccch
Q 047897           93 FPQFDLVVANIPYGISS  109 (232)
Q Consensus        93 ~~~~D~Vi~n~p~~~~~  109 (232)
                      ..+||+|++|+||....
T Consensus        99 ~~~fD~Vi~npPy~~~~  115 (223)
T PRK14967         99 FRPFDVVVSNPPYVPAP  115 (223)
T ss_pred             CCCeeEEEECCCCCCCC
Confidence            34899999999997654

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=5.2e-13  Score=107.69  Aligned_cols=83  Identities=31%  Similarity=0.460  Sum_probs=76.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      -++.+++.+.+.+|++|||||||-|.++..+++ .+.+|+|+++|+++.+.+++++...|++.+++++..|..+++.. |
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~-f  138 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP-F  138 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc-c
Confidence            466778899999999999999999999999999 57999999999999999999999999987999999999888754 9


Q ss_pred             ceeec
Q 047897           97 DLVVA  101 (232)
Q Consensus        97 D~Vi~  101 (232)
                      |.|++
T Consensus       139 DrIvS  143 (283)
T COG2230         139 DRIVS  143 (283)
T ss_pred             ceeee
Confidence            99997

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.46  E-value=5.7e-12  Score=97.50  Aligned_cols=93  Identities=17%  Similarity=0.252  Sum_probs=77.0

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      -++.+.+.+.+++.+++.++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.+++++...++ ++++++.+|+.
T Consensus        13 ~~~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~   91 (187)
T PRK08287         13 PMTKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAP   91 (187)
T ss_pred             CCchHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCch
Confidence            3555777777788888888999999999999999999873  47999999999999999999988776 47999999985


Q ss_pred             CCCCCCcceeecccCc
Q 047897           90 KTEFPQFDLVVANIPY  105 (232)
Q Consensus        90 ~~~~~~~D~Vi~n~p~  105 (232)
                      .....+||+|+++...
T Consensus        92 ~~~~~~~D~v~~~~~~  107 (187)
T PRK08287         92 IELPGKADAIFIGGSG  107 (187)
T ss_pred             hhcCcCCCEEEECCCc
Confidence            4323479999986543

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.46  E-value=2.1e-12  Score=97.47  Aligned_cols=103  Identities=29%  Similarity=0.401  Sum_probs=85.9

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+++..-.+..+.+.++++++|||||+|.++..++.  +..+|+|+|.++++++..++|....|+ +|++++.||+-+
T Consensus        17 ~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~   95 (187)
T COG2242          17 MTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPE   95 (187)
T ss_pred             CcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchH
Confidence            57788888889999999999999999999999999995  779999999999999999999999997 799999999987


Q ss_pred             CC--CCCcceeecccCcccchHHHHHHhc
Q 047897           91 TE--FPQFDLVVANIPYGISSPLVAKLVY  117 (232)
Q Consensus        91 ~~--~~~~D~Vi~n~p~~~~~~~l~~~~~  117 (232)
                      ..  .+++|.|+..=- ...+.++.....
T Consensus        96 ~L~~~~~~daiFIGGg-~~i~~ile~~~~  123 (187)
T COG2242          96 ALPDLPSPDAIFIGGG-GNIEEILEAAWE  123 (187)
T ss_pred             hhcCCCCCCEEEECCC-CCHHHHHHHHHH
Confidence            63  337998886533 333444444443

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.46  E-value=1.3e-12  Score=109.05  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=82.2

Q ss_pred             ccCCHHHHHHHHH----hcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           12 ILTNQRVLDSIVR----KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        12 fl~~~~~~~~i~~----~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      |-.++.+.+.+.+    .+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...++ ++++++++|
T Consensus       151 ~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D  229 (315)
T PRK03522        151 FQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALD  229 (315)
T ss_pred             eecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcC
Confidence            3456665555543    44433568999999999999999999889999999999999999999999888 589999999


Q ss_pred             CCCCCC---CCcceeecccCcccchHHHHHHh
Q 047897           88 ALKTEF---PQFDLVVANIPYGISSPLVAKLV  116 (232)
Q Consensus        88 ~~~~~~---~~~D~Vi~n~p~~~~~~~l~~~~  116 (232)
                      +.++..   ..||+|+.|+|+....+.+..++
T Consensus       230 ~~~~~~~~~~~~D~Vv~dPPr~G~~~~~~~~l  261 (315)
T PRK03522        230 STQFATAQGEVPDLVLVNPPRRGIGKELCDYL  261 (315)
T ss_pred             HHHHHHhcCCCCeEEEECCCCCCccHHHHHHH
Confidence            987532   36999999999875444443333

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.46  E-value=3.5e-13  Score=109.79  Aligned_cols=85  Identities=32%  Similarity=0.452  Sum_probs=67.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ..++.+++.+++++|++|||||||-|.++..+++. +++|+|+.+|++..+.+++++...|+++++++..+|..+++. +
T Consensus        49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~-~  127 (273)
T PF02353_consen   49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG-K  127 (273)
T ss_dssp             HHHHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG----S
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC-C
Confidence            45677888999999999999999999999999995 999999999999999999999999998899999999988765 8


Q ss_pred             cceeecc
Q 047897           96 FDLVVAN  102 (232)
Q Consensus        96 ~D~Vi~n  102 (232)
                      ||.|++-
T Consensus       128 fD~IvSi  134 (273)
T PF02353_consen  128 FDRIVSI  134 (273)
T ss_dssp             -SEEEEE
T ss_pred             CCEEEEE
Confidence            9999873

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.46  E-value=1.6e-12  Score=102.60  Aligned_cols=92  Identities=22%  Similarity=0.366  Sum_probs=79.3

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++..+.+...+++.+.+.++.+|||+|||+|.++..++....+|+++|+++++++.+++++...++ .+++++.+|+.+.
T Consensus        60 ~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  138 (212)
T PRK00312         60 TISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGL-HNVSVRHGDGWKG  138 (212)
T ss_pred             eeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCC-CceEEEECCcccC
Confidence            456689999999999998999999999999999998877667999999999999999999988887 4699999998664


Q ss_pred             C--CCCcceeecccC
Q 047897           92 E--FPQFDLVVANIP  104 (232)
Q Consensus        92 ~--~~~~D~Vi~n~p  104 (232)
                      .  ..+||.|+++.+
T Consensus       139 ~~~~~~fD~I~~~~~  153 (212)
T PRK00312        139 WPAYAPFDRILVTAA  153 (212)
T ss_pred             CCcCCCcCEEEEccC
Confidence            2  247999998654

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.44  E-value=1.1e-12  Score=104.75  Aligned_cols=90  Identities=17%  Similarity=0.408  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .....+.+++.+.+.++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.+++++...+. ++++++++|+.+.
T Consensus        30 ~~~~~~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  108 (231)
T TIGR02752        30 HKKWRKDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMEL  108 (231)
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcC
Confidence            4555677888888888999999999999999999873   46999999999999999999987766 5899999999887


Q ss_pred             CCC--CcceeecccCc
Q 047897           92 EFP--QFDLVVANIPY  105 (232)
Q Consensus        92 ~~~--~~D~Vi~n~p~  105 (232)
                      +.+  +||+|+++.++
T Consensus       109 ~~~~~~fD~V~~~~~l  124 (231)
T TIGR02752       109 PFDDNSFDYVTIGFGL  124 (231)
T ss_pred             CCCCCCccEEEEeccc
Confidence            653  79999987553

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02244 tocopherol O-methyltransferase

Probab=99.44  E-value=8.5e-13  Score=111.22  Aligned_cols=87  Identities=24%  Similarity=0.370  Sum_probs=75.9

Q ss_pred             HHHHHHHHhcCC-----CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           17 RVLDSIVRKSSI-----NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        17 ~~~~~i~~~~~~-----~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .+++.+++.+.+     .++++|||||||+|.++..+++ .+.+|+|+|+++.+++.++++....+..++++++.+|+.+
T Consensus       100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~  179 (340)
T PLN02244        100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN  179 (340)
T ss_pred             HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence            567777887776     6788999999999999999998 4789999999999999999999888776689999999998


Q ss_pred             CCCC--Ccceeeccc
Q 047897           91 TEFP--QFDLVVANI  103 (232)
Q Consensus        91 ~~~~--~~D~Vi~n~  103 (232)
                      .+++  +||+|+++.
T Consensus       180 ~~~~~~~FD~V~s~~  194 (340)
T PLN02244        180 QPFEDGQFDLVWSME  194 (340)
T ss_pred             CCCCCCCccEEEECC
Confidence            7754  799999854

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.44  E-value=1e-12  Score=109.05  Aligned_cols=79  Identities=22%  Similarity=0.424  Sum_probs=68.6

Q ss_pred             CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCcccc
Q 047897           32 DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPYGIS  108 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~~~~  108 (232)
                      .+|||+|||+|.++..++..  ..+|+|+|+|+.+++.|++++...++.++++++++|+.+. +..+||+|++|+||...
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            68999999999999999873  5799999999999999999999888766799999998763 33379999999999765


Q ss_pred             hH
Q 047897          109 SP  110 (232)
Q Consensus       109 ~~  110 (232)
                      ..
T Consensus       215 ~~  216 (307)
T PRK11805        215 ED  216 (307)
T ss_pred             cc
Confidence            43

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.43  E-value=2e-12  Score=102.50  Aligned_cols=84  Identities=26%  Similarity=0.359  Sum_probs=71.3

Q ss_pred             HHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           18 VLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        18 ~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      +.+.+++.+.  ..++.+|||+|||+|.++..++..+.+|+|+|+|+++++.|++++...+...++.+.++|+.+.+ .+
T Consensus        41 ~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~  119 (219)
T TIGR02021        41 MRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC-GE  119 (219)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-CC
Confidence            4445666655  45688999999999999999998888999999999999999999987665457999999998877 78


Q ss_pred             cceeecc
Q 047897           96 FDLVVAN  102 (232)
Q Consensus        96 ~D~Vi~n  102 (232)
                      ||+|++.
T Consensus       120 fD~ii~~  126 (219)
T TIGR02021       120 FDIVVCM  126 (219)
T ss_pred             cCEEEEh
Confidence            9999874

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.42  E-value=1.5e-12  Score=100.32  Aligned_cols=75  Identities=23%  Similarity=0.345  Sum_probs=65.9

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeeccc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANI  103 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~  103 (232)
                      ++++.+|||+|||+|..+..++.  .+.+|+|+|+++.+++.++++.+..+++ +++++++|+.+.+.. +||+|+++.
T Consensus        43 l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~  120 (187)
T PRK00107         43 LPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRA  120 (187)
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEcc
Confidence            44588999999999999998886  5689999999999999999999998874 599999999887654 799999873

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.42  E-value=4.1e-12  Score=103.27  Aligned_cols=87  Identities=22%  Similarity=0.264  Sum_probs=68.9

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhh--cCCCccEEEEEcCCCCCC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAAD--SGFHDRLNVISKDALKTE   92 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~--~~~~~~~~~~~~D~~~~~   92 (232)
                      +.+.+++.+.+.++++|||+|||+|.++..+++.   ..+|+|+|+|++|++.|+++...  .+...+++++++|+.+++
T Consensus        61 ~r~~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp  140 (261)
T PLN02233         61 WKRMAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP  140 (261)
T ss_pred             HHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence            3444456667778899999999999999988873   36999999999999999987642  112257999999999987


Q ss_pred             CC--CcceeecccC
Q 047897           93 FP--QFDLVVANIP  104 (232)
Q Consensus        93 ~~--~~D~Vi~n~p  104 (232)
                      ++  +||.|+++..
T Consensus       141 ~~~~sfD~V~~~~~  154 (261)
T PLN02233        141 FDDCYFDAITMGYG  154 (261)
T ss_pred             CCCCCEeEEEEecc
Confidence            65  7999998653

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=99.41  E-value=2.7e-12  Score=107.09  Aligned_cols=104  Identities=26%  Similarity=0.453  Sum_probs=78.0

Q ss_pred             ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---------cCCeEEEEEcCHHHHHHHHHHHhh
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---------VSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      .+|..|| |++++.+++.|++.+...++.+|+|.+||+|.+..++.+         ....++|+|+++.++..|+.++..
T Consensus        21 ~~k~~G~-~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l   99 (311)
T PF02384_consen   21 SRKKLGQ-FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLL   99 (311)
T ss_dssp             TTTSCGG-C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHH
T ss_pred             hccccce-eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhh
Confidence            4677888 678899999999999888888999999999999888776         457899999999999999988876


Q ss_pred             cCCC-ccEEEEEcCCCCCCC----CCcceeecccCcccc
Q 047897           75 SGFH-DRLNVISKDALKTEF----PQFDLVVANIPYGIS  108 (232)
Q Consensus        75 ~~~~-~~~~~~~~D~~~~~~----~~~D~Vi~n~p~~~~  108 (232)
                      .+.. .+..+..+|.+..+.    ..||+|++||||...
T Consensus       100 ~~~~~~~~~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  100 HGIDNSNINIIQGDSLENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             TTHHCBGCEEEES-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred             hccccccccccccccccccccccccccccccCCCCcccc
Confidence            6542 235689999887643    379999999999876

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.41  E-value=7.5e-12  Score=89.93  Aligned_cols=88  Identities=24%  Similarity=0.415  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      .+.+...+++.+.+.++.+|||+|||+|.++..+++.  ..+|+++|+++.+++.+++++...+. ++++++.+|+....
T Consensus         4 ~~~~~~~~~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~   82 (124)
T TIGR02469         4 KREVRALTLSKLRLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEAL   82 (124)
T ss_pred             hHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccC
Confidence            3566777888888888889999999999999999983  57999999999999999999988776 47999999987522


Q ss_pred             ---CCCcceeeccc
Q 047897           93 ---FPQFDLVVANI  103 (232)
Q Consensus        93 ---~~~~D~Vi~n~  103 (232)
                         .++||.|++..
T Consensus        83 ~~~~~~~D~v~~~~   96 (124)
T TIGR02469        83 EDSLPEPDRVFIGG   96 (124)
T ss_pred             hhhcCCCCEEEECC
Confidence               24799998754

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.41  E-value=1.6e-12  Score=101.16  Aligned_cols=86  Identities=14%  Similarity=0.194  Sum_probs=70.1

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL   98 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~   98 (232)
                      ..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....++.  +.+..+|+...+.+ +||+
T Consensus        20 ~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~~~fD~   97 (195)
T TIGR00477        20 SAVREAVKTVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALNEDYDF   97 (195)
T ss_pred             HHHHHHhccCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhccccCCCCE
Confidence            34445555556779999999999999999998899999999999999999998877763  77888888665543 7999


Q ss_pred             eecccCccc
Q 047897           99 VVANIPYGI  107 (232)
Q Consensus        99 Vi~n~p~~~  107 (232)
                      |+++.+++.
T Consensus        98 I~~~~~~~~  106 (195)
T TIGR00477        98 IFSTVVFMF  106 (195)
T ss_pred             EEEeccccc
Confidence            999876543

Part of a tellurite-reducing operon tehA and tehB

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.41  E-value=1.5e-12  Score=114.92  Aligned_cols=80  Identities=29%  Similarity=0.451  Sum_probs=69.5

Q ss_pred             CCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCccc
Q 047897           31 DDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPYGI  107 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~~~  107 (232)
                      +.+|||+|||+|.++..++.  ...+|+|+|+|+.+++.|++++...++.++++++++|+.+. +..+||+|++|+||..
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            46899999999999999886  46799999999999999999998888766899999998753 2347999999999987


Q ss_pred             chH
Q 047897          108 SSP  110 (232)
Q Consensus       108 ~~~  110 (232)
                      .++
T Consensus       219 ~~~  221 (506)
T PRK01544        219 HSE  221 (506)
T ss_pred             chh
Confidence            754

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.41  E-value=1.9e-12  Score=104.55  Aligned_cols=77  Identities=23%  Similarity=0.285  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP  104 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p  104 (232)
                      .++.+|||+|||+|..+..+++    ++.+++|+|+|+.|++.|++++...+...+++++++|+.+.+.+.+|+|+++..
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            4678999999999999988876    467999999999999999999988776568999999999988888999998764


Q ss_pred             c
Q 047897          105 Y  105 (232)
Q Consensus       105 ~  105 (232)
                      +
T Consensus       135 l  135 (247)
T PRK15451        135 L  135 (247)
T ss_pred             H
Confidence            3

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.40  E-value=3.3e-13  Score=109.22  Aligned_cols=88  Identities=18%  Similarity=0.245  Sum_probs=73.4

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+.+.+.+++.+...++.+|||+|||+|.++..+...+.+|+++|+++.+++.++++..      ...++.+|+.+++++
T Consensus        27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~  100 (251)
T PRK10258         27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLA  100 (251)
T ss_pred             HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCC
Confidence            35677777787776667899999999999999998888999999999999999998753      356889999887654


Q ss_pred             --CcceeecccCcccc
Q 047897           95 --QFDLVVANIPYGIS  108 (232)
Q Consensus        95 --~~D~Vi~n~p~~~~  108 (232)
                        +||+|+++.++++.
T Consensus       101 ~~~fD~V~s~~~l~~~  116 (251)
T PRK10258        101 TATFDLAWSNLAVQWC  116 (251)
T ss_pred             CCcEEEEEECchhhhc
Confidence              79999999876654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.40  E-value=2.9e-12  Score=103.48  Aligned_cols=91  Identities=24%  Similarity=0.455  Sum_probs=75.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-C
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-F   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~   93 (232)
                      .+++.+++.+. ..+.+|||+|||+|.++..++..  ..+++|+|+++.+++.+++++...++ ++++++++|+.+.. .
T Consensus        75 ~l~~~~l~~~~-~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~  152 (251)
T TIGR03534        75 ELVEAALERLK-KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGL-DNVTFLQSDWFEPLPG  152 (251)
T ss_pred             HHHHHHHHhcc-cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhccCcC
Confidence            45556666554 34458999999999999999983  57999999999999999999988877 47999999997732 3


Q ss_pred             CCcceeecccCcccch
Q 047897           94 PQFDLVVANIPYGISS  109 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~~  109 (232)
                      ++||+|++|+||....
T Consensus       153 ~~fD~Vi~npPy~~~~  168 (251)
T TIGR03534       153 GKFDLIVSNPPYIPEA  168 (251)
T ss_pred             CceeEEEECCCCCchh
Confidence            4899999999998654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.40  E-value=2.2e-12  Score=108.42  Aligned_cols=87  Identities=17%  Similarity=0.314  Sum_probs=71.5

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD   97 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D   97 (232)
                      +.+++.+.....++|||+|||+|.++..+++.  ..+|+++|+|+.+++.+++++..+++.  .+++.+|+.+...+.||
T Consensus       186 ~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~~~~fD  263 (342)
T PRK09489        186 QLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDIKGRFD  263 (342)
T ss_pred             HHHHHhccccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccccCCCcc
Confidence            44556565444568999999999999999984  468999999999999999999988763  57888998775445899


Q ss_pred             eeecccCcccc
Q 047897           98 LVVANIPYGIS  108 (232)
Q Consensus        98 ~Vi~n~p~~~~  108 (232)
                      +|++|+|||..
T Consensus       264 lIvsNPPFH~g  274 (342)
T PRK09489        264 MIISNPPFHDG  274 (342)
T ss_pred             EEEECCCccCC
Confidence            99999999853

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.40  E-value=3.3e-12  Score=98.15  Aligned_cols=73  Identities=22%  Similarity=0.393  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D~Vi~n~  103 (232)
                      ++.+|||+|||+|.++..++.  ...+|+|+|.|+.+++.++++.+..++ ++++++++|+.++.. ++||+|+++.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~-~~i~~i~~d~~~~~~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGL-NNVEIVNGRAEDFQHEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCC-CCeEEEecchhhccccCCccEEEehh
Confidence            478999999999999998876  357899999999999999999988887 479999999998753 4899999874

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.39  E-value=5.6e-12  Score=102.67  Aligned_cols=85  Identities=18%  Similarity=0.250  Sum_probs=73.0

Q ss_pred             HHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcc
Q 047897           23 VRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFD   97 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D   97 (232)
                      ...+++.++++|||+|||+|..|..+++.   ...|+|+|+++.+++.+++++...++ .+++++++|+.+++.  +.||
T Consensus        64 ~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD  142 (264)
T TIGR00446        64 PLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFD  142 (264)
T ss_pred             HHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCC
Confidence            45667788999999999999999998872   46899999999999999999999887 479999999877542  4799


Q ss_pred             eeecccCcccc
Q 047897           98 LVVANIPYGIS  108 (232)
Q Consensus        98 ~Vi~n~p~~~~  108 (232)
                      .|++|+|+...
T Consensus       143 ~Vl~D~Pcsg~  153 (264)
T TIGR00446       143 AILLDAPCSGE  153 (264)
T ss_pred             EEEEcCCCCCC
Confidence            99999998643

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=4.7e-12  Score=103.74  Aligned_cols=92  Identities=24%  Similarity=0.424  Sum_probs=73.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-   93 (232)
                      .+++.++......++.+|||+|||+|.++..++..  ..+++|+|+++.+++.+++++. .....++.++++|+.+... 
T Consensus        95 ~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~  173 (275)
T PRK09328         95 ELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPG  173 (275)
T ss_pred             HHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCC
Confidence            34555554555567789999999999999999883  5899999999999999999987 2233579999999976433 


Q ss_pred             CCcceeecccCcccch
Q 047897           94 PQFDLVVANIPYGISS  109 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~~  109 (232)
                      .+||+|++|+||....
T Consensus       174 ~~fD~Iv~npPy~~~~  189 (275)
T PRK09328        174 GRFDLIVSNPPYIPEA  189 (275)
T ss_pred             CceeEEEECCCcCCcc
Confidence            4899999999997654

>PRK14968 putative methyltransferase; Provisional

Probab=99.38  E-value=5.4e-12  Score=97.45  Aligned_cols=94  Identities=23%  Similarity=0.315  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCcc-EEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR-LNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~D~~~~~~~   94 (232)
                      ......+++.+...++.+|||+|||+|.++..++..+.+++|+|+++++++.+++++...+..++ +.++++|+.+...+
T Consensus         9 ~~~~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~   88 (188)
T PRK14968          9 AEDSFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRG   88 (188)
T ss_pred             chhHHHHHHhhhccCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccc
Confidence            33344455555556788999999999999999998889999999999999999999987776333 88999998775433


Q ss_pred             -CcceeecccCcccch
Q 047897           95 -QFDLVVANIPYGISS  109 (232)
Q Consensus        95 -~~D~Vi~n~p~~~~~  109 (232)
                       .||+|++|+||....
T Consensus        89 ~~~d~vi~n~p~~~~~  104 (188)
T PRK14968         89 DKFDVILFNPPYLPTE  104 (188)
T ss_pred             cCceEEEECCCcCCCC
Confidence             699999999997653

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.38  E-value=1.8e-12  Score=105.11  Aligned_cols=86  Identities=22%  Similarity=0.337  Sum_probs=72.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQ   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~   95 (232)
                      ++.+++.+. .++.+|||+|||+|.++..+++.+.+|+|+|+++++++.|+++....++.++++++++|+.+++   ..+
T Consensus        34 ~~~~l~~l~-~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~  112 (255)
T PRK11036         34 LDRLLAELP-PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETP  112 (255)
T ss_pred             HHHHHHhcC-CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCC
Confidence            345666665 4567999999999999999999999999999999999999999988887678999999997753   247


Q ss_pred             cceeecccCc
Q 047897           96 FDLVVANIPY  105 (232)
Q Consensus        96 ~D~Vi~n~p~  105 (232)
                      ||+|+++..+
T Consensus       113 fD~V~~~~vl  122 (255)
T PRK11036        113 VDLILFHAVL  122 (255)
T ss_pred             CCEEEehhHH
Confidence            9999986543

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.38  E-value=4.2e-12  Score=102.52  Aligned_cols=88  Identities=24%  Similarity=0.297  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           18 VLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        18 ~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      +++.++..+.. ..+.+|||+|||+|.++..+++  .+.+|+|+|+|+.+++.+++|+..++    .+++++|+.+..  
T Consensus        73 Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~  148 (251)
T TIGR03704        73 LVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPT  148 (251)
T ss_pred             HHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcch
Confidence            44444444432 2345899999999999999987  35699999999999999999998754    478999987642  


Q ss_pred             --CCCcceeecccCcccch
Q 047897           93 --FPQFDLVVANIPYGISS  109 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~~  109 (232)
                        .+.||+|++|+||....
T Consensus       149 ~~~~~fDlVv~NPPy~~~~  167 (251)
T TIGR03704       149 ALRGRVDILAANAPYVPTD  167 (251)
T ss_pred             hcCCCEeEEEECCCCCCch
Confidence              13799999999997653

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=7.6e-12  Score=108.46  Aligned_cols=134  Identities=18%  Similarity=0.221  Sum_probs=94.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ......+...+++.++.+|||+|||+|..|..++..   ..+|+|+|+++.+++.+++++...|+ .+++++++|+.+++
T Consensus       223 d~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~-~~v~~~~~Da~~l~  301 (431)
T PRK14903        223 GESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKL-SSIEIKIADAERLT  301 (431)
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CeEEEEECchhhhh
Confidence            344445556678889999999999999999998872   57999999999999999999999888 47999999998765


Q ss_pred             ---CCCcceeecccCcccch-----HHHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhhe
Q 047897           93 ---FPQFDLVVANIPYGISS-----PLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAVN  152 (232)
Q Consensus        93 ---~~~~D~Vi~n~p~~~~~-----~~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~~  152 (232)
                         .++||.|++|+|+....     +.+.+.....  -.......|.++   +.+++.++|...|.++++.
T Consensus       302 ~~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~--~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        302 EYVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKE--DFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             hhhhccCCEEEECCCCCCCccccCChHHHHhCCHH--HHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence               24799999999985431     2221111000  000111245544   3445666677777777763

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1e-12  Score=94.25  Aligned_cols=101  Identities=23%  Similarity=0.344  Sum_probs=83.5

Q ss_pred             cCCCcccccCCHHHHHHHHHhcC----CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSS----INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHD   79 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~----~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~   79 (232)
                      +-.+-| |.+.|+++..|+..+.    --+|..++|+|||.|-++..... ....|+|+|+|+++++++++|++...+  
T Consensus        20 k~~LEQ-Y~T~p~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--   96 (185)
T KOG3420|consen   20 KLLLEQ-YPTRPHIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--   96 (185)
T ss_pred             chhhhh-CCCcHHHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--
Confidence            334445 7788999999987663    23678999999999999977766 457899999999999999999998776  


Q ss_pred             cEEEEEcCCCCCCCC--CcceeecccCcccc
Q 047897           80 RLNVISKDALKTEFP--QFDLVVANIPYGIS  108 (232)
Q Consensus        80 ~~~~~~~D~~~~~~~--~~D~Vi~n~p~~~~  108 (232)
                      ++++.++|+++....  .||.++.|+||+..
T Consensus        97 qidlLqcdildle~~~g~fDtaviNppFGTk  127 (185)
T KOG3420|consen   97 QIDLLQCDILDLELKGGIFDTAVINPPFGTK  127 (185)
T ss_pred             hhheeeeeccchhccCCeEeeEEecCCCCcc
Confidence            479999999987654  79999999999765

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=99.37  E-value=4.7e-12  Score=104.88  Aligned_cols=82  Identities=18%  Similarity=0.252  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEE-cCCCCC------CCCCccee
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVIS-KDALKT------EFPQFDLV   99 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~-~D~~~~------~~~~~D~V   99 (232)
                      .+.++||||||+|.+...++.  .+.+++|+|+|+.+++.|++++..+ ++.++++++. .|..+.      +.+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            457899999999988877766  4789999999999999999999998 6877888865 333221      23479999


Q ss_pred             ecccCcccchHH
Q 047897          100 VANIPYGISSPL  111 (232)
Q Consensus       100 i~n~p~~~~~~~  111 (232)
                      +|||||+.+...
T Consensus       194 vcNPPf~~s~~e  205 (321)
T PRK11727        194 LCNPPFHASAAE  205 (321)
T ss_pred             EeCCCCcCcchh
Confidence            999999987554

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.37  E-value=4.9e-12  Score=102.94  Aligned_cols=95  Identities=27%  Similarity=0.499  Sum_probs=80.2

Q ss_pred             cCCCcccccCCH--HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            5 HKSKGQHILTNQ--RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         5 ~k~~gq~fl~~~--~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      -+-+|..|+.+.  .....++..+.+.++.+|||||||+|..+..++. .+.+|+|+|+++.+++.++++...   .+++
T Consensus        25 e~~~g~~~~~~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i  101 (263)
T PTZ00098         25 EFIFGEDYISSGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKI  101 (263)
T ss_pred             HHHhCCCCCCCCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCce
Confidence            455788888864  4578888889889999999999999999998877 467999999999999999998754   2579


Q ss_pred             EEEEcCCCCCCCC--Ccceeecc
Q 047897           82 NVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        82 ~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      .++.+|+.+.+++  +||+|+++
T Consensus       102 ~~~~~D~~~~~~~~~~FD~V~s~  124 (263)
T PTZ00098        102 EFEANDILKKDFPENTFDMIYSR  124 (263)
T ss_pred             EEEECCcccCCCCCCCeEEEEEh
Confidence            9999999887654  79999984

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.36  E-value=4.1e-12  Score=108.36  Aligned_cols=104  Identities=21%  Similarity=0.233  Sum_probs=82.9

Q ss_pred             ccCCHHHHHHHHHh----cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           12 ILTNQRVLDSIVRK----SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        12 fl~~~~~~~~i~~~----~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      |-+++.+.+.+.+.    ++..++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++|+...+. ++++++.+|
T Consensus       211 ~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~~d  289 (374)
T TIGR02085       211 FQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAALD  289 (374)
T ss_pred             ccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECC
Confidence            55677777777653    3323567999999999999999999889999999999999999999998887 489999999


Q ss_pred             CCCCCC---CCcceeecccCcccchH-HHHHHh
Q 047897           88 ALKTEF---PQFDLVVANIPYGISSP-LVAKLV  116 (232)
Q Consensus        88 ~~~~~~---~~~D~Vi~n~p~~~~~~-~l~~~~  116 (232)
                      +.+...   .+||+|+.|||+....+ .+..+.
T Consensus       290 ~~~~~~~~~~~~D~vi~DPPr~G~~~~~l~~l~  322 (374)
T TIGR02085       290 SAKFATAQMSAPELVLVNPPRRGIGKELCDYLS  322 (374)
T ss_pred             HHHHHHhcCCCCCEEEECCCCCCCcHHHHHHHH
Confidence            976432   36999999999975443 334443

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.36  E-value=3.9e-12  Score=104.79  Aligned_cols=97  Identities=24%  Similarity=0.320  Sum_probs=88.3

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALK   90 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~   90 (232)
                      -..+|.+++.+++++.+.+|+.|||.-||||++..++.-.+.+++|.|+|..|++-++.|++.+++ +...+... |+..
T Consensus       179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i-~~~~~~~~~Da~~  257 (347)
T COG1041         179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGI-EDYPVLKVLDATN  257 (347)
T ss_pred             CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCc-CceeEEEeccccc
Confidence            456899999999999999999999999999999999988999999999999999999999999887 45666666 9999


Q ss_pred             CCCCC--cceeecccCcccch
Q 047897           91 TEFPQ--FDLVVANIPYGISS  109 (232)
Q Consensus        91 ~~~~~--~D~Vi~n~p~~~~~  109 (232)
                      +++++  +|.|+++|||+.++
T Consensus       258 lpl~~~~vdaIatDPPYGrst  278 (347)
T COG1041         258 LPLRDNSVDAIATDPPYGRST  278 (347)
T ss_pred             CCCCCCccceEEecCCCCccc
Confidence            99874  99999999999875

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.36  E-value=6.6e-12  Score=100.32  Aligned_cols=101  Identities=26%  Similarity=0.409  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +.-+..|+..+++.+|++|||.|.|+|.+|..+++   ...+|+.+|++++.++.|+++++.+|+.+++++.+.|+.+..
T Consensus        26 pkD~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g  105 (247)
T PF08704_consen   26 PKDISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG  105 (247)
T ss_dssp             HHHHHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred             CchHHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence            67788899999999999999999999999999998   568999999999999999999999999889999999997533


Q ss_pred             C-----CCcceeecccCcccc-hHHHHHHh
Q 047897           93 F-----PQFDLVVANIPYGIS-SPLVAKLV  116 (232)
Q Consensus        93 ~-----~~~D~Vi~n~p~~~~-~~~l~~~~  116 (232)
                      +     ..+|.|+.++|-.|. -+.+.+.+
T Consensus       106 ~~~~~~~~~DavfLDlp~Pw~~i~~~~~~L  135 (247)
T PF08704_consen  106 FDEELESDFDAVFLDLPDPWEAIPHAKRAL  135 (247)
T ss_dssp             -STT-TTSEEEEEEESSSGGGGHHHHHHHE
T ss_pred             ccccccCcccEEEEeCCCHHHHHHHHHHHH
Confidence            2     368999999998875 34444555

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.36  E-value=3.2e-12  Score=103.85  Aligned_cols=86  Identities=20%  Similarity=0.280  Sum_probs=72.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-   93 (232)
                      ...+.++..+.+.++.+|||||||+|.++..+++  .+.+|+|+|+++.+++.++++.      ++++++.+|+.++.. 
T Consensus        18 ~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~   91 (258)
T PRK01683         18 RPARDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPP   91 (258)
T ss_pred             cHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCC
Confidence            4567777888888889999999999999999987  3689999999999999999875      468899999987643 


Q ss_pred             CCcceeecccCcccc
Q 047897           94 PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~  108 (232)
                      .+||+|+++..+++.
T Consensus        92 ~~fD~v~~~~~l~~~  106 (258)
T PRK01683         92 QALDLIFANASLQWL  106 (258)
T ss_pred             CCccEEEEccChhhC
Confidence            389999999876554

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.36  E-value=1.1e-11  Score=103.02  Aligned_cols=90  Identities=19%  Similarity=0.292  Sum_probs=78.1

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      +..+|.+...+++.++++++++|||+|||+|.++..+++..   .+|+++|+++++++.|++++...+. +++.++++|+
T Consensus        62 ~~~~p~l~a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~  140 (322)
T PRK13943         62 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDG  140 (322)
T ss_pred             cCCcHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCh
Confidence            55679999999999998899999999999999999998832   4699999999999999999988887 5799999998


Q ss_pred             CCCCC--CCcceeecc
Q 047897           89 LKTEF--PQFDLVVAN  102 (232)
Q Consensus        89 ~~~~~--~~~D~Vi~n  102 (232)
                      .+...  .+||+|+++
T Consensus       141 ~~~~~~~~~fD~Ii~~  156 (322)
T PRK13943        141 YYGVPEFAPYDVIFVT  156 (322)
T ss_pred             hhcccccCCccEEEEC
Confidence            76533  379999975

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.35  E-value=1.3e-11  Score=95.55  Aligned_cols=97  Identities=18%  Similarity=0.142  Sum_probs=78.4

Q ss_pred             ccCCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ..++..+.+.+...+. .-++.+|||++||+|.++.+++.++ .+|+++|.|+.+++.+++|+...+..++++++++|+.
T Consensus        30 rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~  109 (189)
T TIGR00095        30 RPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSAL  109 (189)
T ss_pred             CCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHH
Confidence            4456667777777653 2357899999999999999999975 4899999999999999999998887667999999996


Q ss_pred             CCC--C---C-CcceeecccCcccc
Q 047897           90 KTE--F---P-QFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~~--~---~-~~D~Vi~n~p~~~~  108 (232)
                      +.-  .   . .+|+|+.+|||...
T Consensus       110 ~~l~~~~~~~~~~dvv~~DPPy~~~  134 (189)
T TIGR00095       110 RALKFLAKKPTFDNVIYLDPPFFNG  134 (189)
T ss_pred             HHHHHhhccCCCceEEEECcCCCCC
Confidence            531  1   2 37999999999643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.35  E-value=2.4e-12  Score=100.58  Aligned_cols=86  Identities=27%  Similarity=0.363  Sum_probs=70.4

Q ss_pred             CHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           15 NQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++--++.+.+.+..   .++.+|||||||-|.++..+++.+..|+|+|+++.+++.|+..+...|+.  +++...+++++
T Consensus        41 N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl  118 (243)
T COG2227          41 NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDL  118 (243)
T ss_pred             ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHH
Confidence            33333344444432   47889999999999999999999999999999999999999999988863  77888888887


Q ss_pred             CCC--Ccceeecc
Q 047897           92 EFP--QFDLVVAN  102 (232)
Q Consensus        92 ~~~--~~D~Vi~n  102 (232)
                      ...  +||+|+|.
T Consensus       119 ~~~~~~FDvV~cm  131 (243)
T COG2227         119 ASAGGQFDVVTCM  131 (243)
T ss_pred             HhcCCCccEEEEh
Confidence            654  99999985

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.34  E-value=2e-11  Score=106.50  Aligned_cols=90  Identities=18%  Similarity=0.186  Sum_probs=75.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-   93 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-   93 (232)
                      .....+..+++.++++|||+|||+|..|..+++   ...+|+|+|+++.+++.+++++...|+ .+++++.+|+.+... 
T Consensus       238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~-~~v~~~~~Da~~~~~~  316 (445)
T PRK14904        238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGI-TIIETIEGDARSFSPE  316 (445)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCC-CeEEEEeCcccccccC
Confidence            333445567777899999999999999988876   346999999999999999999999888 479999999988753 


Q ss_pred             CCcceeecccCcccc
Q 047897           94 PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~  108 (232)
                      ..||.|+.|+|+...
T Consensus       317 ~~fD~Vl~D~Pcsg~  331 (445)
T PRK14904        317 EQPDAILLDAPCTGT  331 (445)
T ss_pred             CCCCEEEEcCCCCCc
Confidence            379999999998554

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.34  E-value=4.1e-11  Score=93.56  Aligned_cols=91  Identities=24%  Similarity=0.365  Sum_probs=75.7

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ++.+.+....+..+++.++++|||+|||+|.++..++.   ...+|+++|+++.+++.+++++...++.+++.++.+|+.
T Consensus        23 ~t~~~~r~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~  102 (198)
T PRK00377         23 MTKEEIRALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAP  102 (198)
T ss_pred             CCHHHHHHHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechh
Confidence            45466766667888889999999999999999999876   346899999999999999999998885568999999997


Q ss_pred             CCC---CCCcceeeccc
Q 047897           90 KTE---FPQFDLVVANI  103 (232)
Q Consensus        90 ~~~---~~~~D~Vi~n~  103 (232)
                      +..   .+.||.|+++.
T Consensus       103 ~~l~~~~~~~D~V~~~~  119 (198)
T PRK00377        103 EILFTINEKFDRIFIGG  119 (198)
T ss_pred             hhHhhcCCCCCEEEECC
Confidence            642   14799999864

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.33  E-value=8.2e-12  Score=106.81  Aligned_cols=96  Identities=17%  Similarity=0.228  Sum_probs=76.6

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~   89 (232)
                      |+.|+...+..+..+  .++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++|+..++++ .+++++++|+.
T Consensus       204 ~flDqr~~R~~~~~~--~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~  281 (396)
T PRK15128        204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_pred             cChhhHHHHHHHHHh--cCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHH
Confidence            444455555555544  35789999999999999886664 459999999999999999999998875 47999999998


Q ss_pred             CCC------CCCcceeecccCcccch
Q 047897           90 KTE------FPQFDLVVANIPYGISS  109 (232)
Q Consensus        90 ~~~------~~~~D~Vi~n~p~~~~~  109 (232)
                      ++.      ..+||+|++||||...+
T Consensus       282 ~~l~~~~~~~~~fDlVilDPP~f~~~  307 (396)
T PRK15128        282 KLLRTYRDRGEKFDVIVMDPPKFVEN  307 (396)
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCCCC
Confidence            752      23799999999986553

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.33  E-value=2.9e-11  Score=104.98  Aligned_cols=90  Identities=21%  Similarity=0.287  Sum_probs=75.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      ......++..+++.++++|||+|||+|..|..+++.  +.+|+|+|+++.+++.+++++...|+.  ++++++|+.+.+ 
T Consensus       230 d~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~~~~  307 (427)
T PRK10901        230 DAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARDPAQ  307 (427)
T ss_pred             CHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCcccchh
Confidence            344555666788889999999999999999999884  369999999999999999999988863  789999998753 


Q ss_pred             ---CCCcceeecccCccc
Q 047897           93 ---FPQFDLVVANIPYGI  107 (232)
Q Consensus        93 ---~~~~D~Vi~n~p~~~  107 (232)
                         ..+||.|++|+|+..
T Consensus       308 ~~~~~~fD~Vl~D~Pcs~  325 (427)
T PRK10901        308 WWDGQPFDRILLDAPCSA  325 (427)
T ss_pred             hcccCCCCEEEECCCCCc
Confidence               237999999999864

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.32  E-value=1e-11  Score=103.41  Aligned_cols=74  Identities=20%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      .++.+|||||||+|.++..+++.+.+|+|+|.++++++.|+++....+...+++++++|+.+++.+  +||+|++.
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~  205 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSL  205 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEh
Confidence            356799999999999999999888999999999999999999876554435799999999887643  79999974

>TIGR00740 methyltransferase, putative

Probab=99.32  E-value=1e-11  Score=99.78  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP  104 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p  104 (232)
                      .++.+|||+|||+|.++..+++    ++.+++|+|+++.|++.|++++...+...+++++++|+.+.+.+.+|+|+++..
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            4677999999999999998887    367899999999999999999887665457999999999998888999888765


Q ss_pred             cc
Q 047897          105 YG  106 (232)
Q Consensus       105 ~~  106 (232)
                      .+
T Consensus       132 l~  133 (239)
T TIGR00740       132 LQ  133 (239)
T ss_pred             hh
Confidence            33

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.32  E-value=1.8e-11  Score=106.58  Aligned_cols=98  Identities=17%  Similarity=0.278  Sum_probs=79.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EF   93 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~   93 (232)
                      +.+.+.+.+.+.++++|||+|||+|.++..+++...+|+|+|+++.+++.|++++..+++ .+++++.+|+.+.    ..
T Consensus       280 l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~  358 (431)
T TIGR00479       280 LVDRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPW  358 (431)
T ss_pred             HHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHh
Confidence            444555666667788999999999999999999888999999999999999999998887 5899999999753    11


Q ss_pred             --CCcceeecccCccc-chHHHHHHh
Q 047897           94 --PQFDLVVANIPYGI-SSPLVAKLV  116 (232)
Q Consensus        94 --~~~D~Vi~n~p~~~-~~~~l~~~~  116 (232)
                        ..||+|+.|+|+.. ....+..+.
T Consensus       359 ~~~~~D~vi~dPPr~G~~~~~l~~l~  384 (431)
T TIGR00479       359 AGQIPDVLLLDPPRKGCAAEVLRTII  384 (431)
T ss_pred             cCCCCCEEEECcCCCCCCHHHHHHHH
Confidence              26899999999865 344544433

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=2.4e-11  Score=105.66  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=78.8

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      |.........+...+++.++++|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...|+ .+++++++|+
T Consensus       234 ~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~-~~v~~~~~D~  312 (434)
T PRK14901        234 WTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGL-KSIKILAADS  312 (434)
T ss_pred             EEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCC-CeEEEEeCCh
Confidence            3343445555566778888999999999999999999873   36899999999999999999999998 4799999999


Q ss_pred             CCCC------CCCcceeecccCccc
Q 047897           89 LKTE------FPQFDLVVANIPYGI  107 (232)
Q Consensus        89 ~~~~------~~~~D~Vi~n~p~~~  107 (232)
                      .+.+      ...||.|++|+|+..
T Consensus       313 ~~~~~~~~~~~~~fD~Vl~DaPCSg  337 (434)
T PRK14901        313 RNLLELKPQWRGYFDRILLDAPCSG  337 (434)
T ss_pred             hhcccccccccccCCEEEEeCCCCc
Confidence            8765      237999999999754

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.32  E-value=4.5e-12  Score=102.85  Aligned_cols=84  Identities=23%  Similarity=0.317  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-   93 (232)
                      .....+++.+...++.+|||+|||+|.++..+++.  +.+|+|+|+++.|++.++++        +++++++|+.+++. 
T Consensus        16 ~~~~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~   87 (255)
T PRK14103         16 RPFYDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPK   87 (255)
T ss_pred             CHHHHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCC
Confidence            44567788888788899999999999999999884  67999999999999998763        37799999987643 


Q ss_pred             CCcceeecccCcccc
Q 047897           94 PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~  108 (232)
                      ++||+|+++..+++.
T Consensus        88 ~~fD~v~~~~~l~~~  102 (255)
T PRK14103         88 PDTDVVVSNAALQWV  102 (255)
T ss_pred             CCceEEEEehhhhhC
Confidence            489999998776554

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.31  E-value=1.1e-11  Score=101.75  Aligned_cols=110  Identities=32%  Similarity=0.356  Sum_probs=74.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGI  107 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~  107 (232)
                      .++++|||+|||+|.++...++.+ .+|+|+|+|+.+++.|++|+..+++..++.+.  ...+....+||+|++|+-.+.
T Consensus       160 ~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~~~~~~~~~dlvvANI~~~v  237 (295)
T PF06325_consen  160 KPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LSEDLVEGKFDLVVANILADV  237 (295)
T ss_dssp             STTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CTSCTCCS-EEEEEEES-HHH
T ss_pred             cCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--EecccccccCCEEEECCCHHH
Confidence            577899999999999999999955 58999999999999999999999997766553  233333468999999986544


Q ss_pred             chHHHH---HHhc-CCCCccceEehhHHHHHHHHhcC
Q 047897          108 SSPLVA---KLVY-GTKSFRSATLLLQKEFARRLLAS  140 (232)
Q Consensus       108 ~~~~l~---~~~~-~~~~~~~~~~~~q~e~~~rl~~~  140 (232)
                      -..+..   ..+. .+.....+.+..|.+.....+.+
T Consensus       238 L~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~  274 (295)
T PF06325_consen  238 LLELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ  274 (295)
T ss_dssp             HHHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC
Confidence            433322   2222 22333445555666555544443

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.31  E-value=5e-12  Score=87.92  Aligned_cols=66  Identities=32%  Similarity=0.569  Sum_probs=55.9

Q ss_pred             EEEEcCCccHhHHHHHhcC-----CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeec
Q 047897           34 VLEIGPGTGNLTLKLLEVS-----KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVA  101 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~~~-----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~  101 (232)
                      |||+|||+|..+..+++..     .+++|+|+|+++++.++++....+.  +++++++|+.+++.  ++||+|++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~   73 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVC   73 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEE
Confidence            7999999999999999843     8999999999999999999987664  69999999998764  38999998

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.31  E-value=6.7e-12  Score=96.16  Aligned_cols=92  Identities=20%  Similarity=0.223  Sum_probs=76.1

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF   96 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~   96 (232)
                      ..++..+.+....+|.|+|||+|..|..+++  +...++|+|.|++|++.|++++      ++++|..+|+.++..+ +.
T Consensus        20 ~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~   93 (257)
T COG4106          20 RDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPT   93 (257)
T ss_pred             HHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCcc
Confidence            3455666777788999999999999999999  6899999999999999998887      6799999999998654 78


Q ss_pred             ceeecccCcccch---HHHHHHhc
Q 047897           97 DLVVANIPYGISS---PLVAKLVY  117 (232)
Q Consensus        97 D~Vi~n~p~~~~~---~~l~~~~~  117 (232)
                      |++++|-.++|-.   ..+.+++.
T Consensus        94 dllfaNAvlqWlpdH~~ll~rL~~  117 (257)
T COG4106          94 DLLFANAVLQWLPDHPELLPRLVS  117 (257)
T ss_pred             chhhhhhhhhhccccHHHHHHHHH
Confidence            9999998887763   34444443

>PLN02672 methionine S-methyltransferase

Probab=99.30  E-value=1e-11  Score=116.42  Aligned_cols=99  Identities=22%  Similarity=0.280  Sum_probs=77.1

Q ss_pred             ccCCHHHHHHHHHhcCCC-----CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCC-------
Q 047897           12 ILTNQRVLDSIVRKSSIN-----PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGF-------   77 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~-----~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-------   77 (232)
                      .++++...+.+++.+...     ++.+|||+|||+|.++..++.  ...+|+|+|+|+.+++.|++|+..+++       
T Consensus        95 VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~  174 (1082)
T PLN02672         95 IFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPV  174 (1082)
T ss_pred             cccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccc
Confidence            455566566666654322     245899999999999999988  347999999999999999999987543       


Q ss_pred             --------CccEEEEEcCCCCCCCC---CcceeecccCcccchH
Q 047897           78 --------HDRLNVISKDALKTEFP---QFDLVVANIPYGISSP  110 (232)
Q Consensus        78 --------~~~~~~~~~D~~~~~~~---~~D~Vi~n~p~~~~~~  110 (232)
                              .++++++++|..+...+   .||+||+|+||-...+
T Consensus       175 ~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e  218 (1082)
T PLN02672        175 YDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPN  218 (1082)
T ss_pred             cccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcc
Confidence                    14799999999875432   5999999999987643

>PLN03075 nicotianamine synthase; Provisional

Probab=99.30  E-value=2.7e-11  Score=98.85  Aligned_cols=81  Identities=17%  Similarity=0.260  Sum_probs=64.3

Q ss_pred             HHhcCCCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEEEcCCCCCCC--CC
Q 047897           23 VRKSSINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVISKDALKTEF--PQ   95 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~--~~   95 (232)
                      +......++++|+|||||+|.+|..++.    ...+++++|+|+++++.|++.+.. .++.++++|..+|+.+...  ..
T Consensus       116 L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~  195 (296)
T PLN03075        116 LSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKE  195 (296)
T ss_pred             HHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCC
Confidence            3333334678999999999976555443    467899999999999999999964 6776789999999998643  58


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      ||+|+++.
T Consensus       196 FDlVF~~A  203 (296)
T PLN03075        196 YDVVFLAA  203 (296)
T ss_pred             cCEEEEec
Confidence            99999873

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.30  E-value=4.5e-11  Score=104.34  Aligned_cols=90  Identities=23%  Similarity=0.347  Sum_probs=75.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      .....+...+++.++++|||+|||+|..+..+++.   ..+|+|+|+++.+++.+++++...|+ .+++++++|+.+.. 
T Consensus       237 ~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~  315 (444)
T PRK14902        237 ESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGL-TNIETKALDARKVHE  315 (444)
T ss_pred             hHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCCcccccc
Confidence            34445556677788899999999999999999872   57999999999999999999999888 46999999998763 


Q ss_pred             -C-CCcceeecccCccc
Q 047897           93 -F-PQFDLVVANIPYGI  107 (232)
Q Consensus        93 -~-~~~D~Vi~n~p~~~  107 (232)
                       . ..||.|++|+|+..
T Consensus       316 ~~~~~fD~Vl~D~Pcsg  332 (444)
T PRK14902        316 KFAEKFDKILVDAPCSG  332 (444)
T ss_pred             hhcccCCEEEEcCCCCC
Confidence             2 47999999999753

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.30  E-value=3.6e-11  Score=95.89  Aligned_cols=85  Identities=26%  Similarity=0.308  Sum_probs=67.6

Q ss_pred             HHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           19 LDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      .+.+++.+.   ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+..+++.+..+|+. ...++
T Consensus        49 ~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~-~~~~~  127 (230)
T PRK07580         49 RDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE-SLLGR  127 (230)
T ss_pred             HHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch-hccCC
Confidence            334444443   34677999999999999999998888899999999999999999987766457999999943 33458


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      ||+|+++-.
T Consensus       128 fD~v~~~~~  136 (230)
T PRK07580        128 FDTVVCLDV  136 (230)
T ss_pred             cCEEEEcch
Confidence            999987643

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.30  E-value=2.8e-11  Score=93.01  Aligned_cols=80  Identities=24%  Similarity=0.441  Sum_probs=64.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceee
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVV  100 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi  100 (232)
                      +++.++.-++.++||+|||.|..+..|++.|..|+|+|+|+..++.+++.+...+++  ++....|+.+...+ .+|+|+
T Consensus        22 v~~a~~~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~~~yD~I~   99 (192)
T PF03848_consen   22 VLEAVPLLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFPEEYDFIV   99 (192)
T ss_dssp             HHHHCTTS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-TTTEEEEE
T ss_pred             HHHHHhhcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhccccCCcCEEE
Confidence            444455556779999999999999999999999999999999999999999888874  99999999887765 799998


Q ss_pred             ccc
Q 047897          101 ANI  103 (232)
Q Consensus       101 ~n~  103 (232)
                      +..
T Consensus       100 st~  102 (192)
T PF03848_consen  100 STV  102 (192)
T ss_dssp             EES
T ss_pred             EEE
Confidence            743

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=99.29  E-value=2.5e-11  Score=101.34  Aligned_cols=99  Identities=23%  Similarity=0.399  Sum_probs=86.0

Q ss_pred             cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-----------------------------------
Q 047897            9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-----------------------------------   53 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-----------------------------------   53 (232)
                      |+--| ++.++..|+...+..++..++|.=||+|.+..+.+-.+.                                   
T Consensus       171 g~ApL-ketLAaAil~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~  249 (381)
T COG0116         171 GPAPL-KETLAAAILLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR  249 (381)
T ss_pred             CCCCc-hHHHHHHHHHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence            33334 388999999999999999999999999999998876332                                   


Q ss_pred             ------eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCcccc
Q 047897           54 ------KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGIS  108 (232)
Q Consensus        54 ------~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~~~~  108 (232)
                            .++|+|+|+.+++.|+.|+...|+.+.++|.++|+.++..+  ++|+||+||||+.-
T Consensus       250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR  312 (381)
T COG0116         250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER  312 (381)
T ss_pred             hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh
Confidence                  37799999999999999999999988999999999988655  89999999999843

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.28  E-value=4.3e-11  Score=101.16  Aligned_cols=86  Identities=21%  Similarity=0.224  Sum_probs=71.6

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCC
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQ   95 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~   95 (232)
                      +++.+....+..+||||||+|.++..++.  +...++|+|+++.+++.+.+++...++ +|+.++++|+..+    +..+
T Consensus       114 ~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s  192 (390)
T PRK14121        114 FLDFISKNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNS  192 (390)
T ss_pred             HHHHhcCCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCc
Confidence            34444445667899999999999999998  468999999999999999999998888 5899999999653    3348


Q ss_pred             cceeecccCcccc
Q 047897           96 FDLVVANIPYGIS  108 (232)
Q Consensus        96 ~D~Vi~n~p~~~~  108 (232)
                      +|.|++|.|..|.
T Consensus       193 ~D~I~lnFPdPW~  205 (390)
T PRK14121        193 VEKIFVHFPVPWD  205 (390)
T ss_pred             eeEEEEeCCCCcc
Confidence            9999999887664

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.28  E-value=4.1e-11  Score=93.42  Aligned_cols=89  Identities=28%  Similarity=0.432  Sum_probs=72.2

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+.+...+++.+++.++++|||+|||+|.++..++.  .+.+|+++|+|+.+++.+++++...+. ++++++.+|+.+
T Consensus        23 ~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~  101 (196)
T PRK07402         23 LTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPE  101 (196)
T ss_pred             CCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHH
Confidence            45566776788888888899999999999999999876  458999999999999999999988877 579999999865


Q ss_pred             C-C-C-CCcceeecc
Q 047897           91 T-E-F-PQFDLVVAN  102 (232)
Q Consensus        91 ~-~-~-~~~D~Vi~n  102 (232)
                      . + . +.+|.++.+
T Consensus       102 ~~~~~~~~~d~v~~~  116 (196)
T PRK07402        102 CLAQLAPAPDRVCIE  116 (196)
T ss_pred             HHhhCCCCCCEEEEE
Confidence            2 1 1 245666543

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.28  E-value=6.5e-11  Score=102.81  Aligned_cols=134  Identities=19%  Similarity=0.244  Sum_probs=92.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      ......++..+++.++++|||+|||+|..|..+++.  ..+|+|+|+++.+++.+++++...|+..++.+..+|....+.
T Consensus       224 d~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~  303 (426)
T TIGR00563       224 DASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ  303 (426)
T ss_pred             CHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence            345556677788889999999999999999999883  479999999999999999999998875344557788765432


Q ss_pred             ----CCcceeecccCcccch-----HHHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhh
Q 047897           94 ----PQFDLVVANIPYGISS-----PLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAV  151 (232)
Q Consensus        94 ----~~~D~Vi~n~p~~~~~-----~~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~  151 (232)
                          .+||.|++|.|+....     +.+.+.... ... ......|.++   +.+++.+.|...|..+++
T Consensus       304 ~~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~-~~~-~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~  371 (426)
T TIGR00563       304 WAENEQFDRILLDAPCSATGVIRRHPDIKWLRKP-RDI-AELAELQSEILDAIWPLLKTGGTLVYATCSV  371 (426)
T ss_pred             cccccccCEEEEcCCCCCCcccccCcchhhcCCH-HHH-HHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence                3799999999976542     111100000 000 0111235555   445566777777777666

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=2.7e-11  Score=95.92  Aligned_cols=95  Identities=21%  Similarity=0.371  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           16 QRVLDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        16 ~~~~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      +.+++.+++..+   ...+..+||+|||+|.++..++.  ..+.|+|+|.++.++..|.+|+...++.+++.+++-+...
T Consensus       131 EE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~  210 (328)
T KOG2904|consen  131 EEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMES  210 (328)
T ss_pred             HHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccc
Confidence            345555555443   23466899999999999999998  5689999999999999999999999988899998654433


Q ss_pred             ----C---CCCCcceeecccCcccchH
Q 047897           91 ----T---EFPQFDLVVANIPYGISSP  110 (232)
Q Consensus        91 ----~---~~~~~D~Vi~n~p~~~~~~  110 (232)
                          .   .....|++++|+||-.+.+
T Consensus       211 d~~~~~~l~~~~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  211 DASDEHPLLEGKIDLLVSNPPYIRKDD  237 (328)
T ss_pred             ccccccccccCceeEEecCCCcccccc
Confidence                2   1237899999999987765

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=99.27  E-value=3.4e-11  Score=88.66  Aligned_cols=96  Identities=26%  Similarity=0.361  Sum_probs=81.6

Q ss_pred             ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDR   80 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~   80 (232)
                      --|..|.---++.-++++|...+++..|..|||+|+|+|.+|.+++++   ...++++|.|++++.++.+..      +.
T Consensus        22 ~PrtVGaI~PsSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~   95 (194)
T COG3963          22 NPRTVGAILPSSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PG   95 (194)
T ss_pred             CCceeeeecCCcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CC
Confidence            345566666677889999999999999999999999999999999993   578999999999999999887      45


Q ss_pred             EEEEEcCCCCCC-------CCCcceeecccCc
Q 047897           81 LNVISKDALKTE-------FPQFDLVVANIPY  105 (232)
Q Consensus        81 ~~~~~~D~~~~~-------~~~~D~Vi~n~p~  105 (232)
                      +.+++||+.++.       .+.||.|||.+|.
T Consensus        96 ~~ii~gda~~l~~~l~e~~gq~~D~viS~lPl  127 (194)
T COG3963          96 VNIINGDAFDLRTTLGEHKGQFFDSVISGLPL  127 (194)
T ss_pred             ccccccchhhHHHHHhhcCCCeeeeEEecccc
Confidence            779999998875       1268999997774

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.27  E-value=2.6e-11  Score=99.98  Aligned_cols=74  Identities=19%  Similarity=0.335  Sum_probs=64.3

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPY  105 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~  105 (232)
                      ++.+|||+|||+|..+..++..+.+|+|+|+|+.+++.+++++...++  ++++..+|+...+.+ +||+|+++..+
T Consensus       120 ~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~fD~I~~~~vl  194 (287)
T PRK12335        120 KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEEYDFILSTVVL  194 (287)
T ss_pred             CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCCccEEEEcchh
Confidence            455999999999999999999889999999999999999999988776  588899998776544 79999987543

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.27  E-value=4e-11  Score=93.29  Aligned_cols=77  Identities=27%  Similarity=0.328  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCcceeecc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~D~Vi~n  102 (232)
                      .+.++||||||+|.++..++.  +...++|+|+++.+++.|+++....++ +|++++++|+.+++     ...+|.|+.|
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~   94 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGL-KNLHVLCGDANELLDKFFPDGSLSKVFLN   94 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCC-CCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence            456899999999999999998  467999999999999999999988887 48999999997642     2379999999


Q ss_pred             cCccc
Q 047897          103 IPYGI  107 (232)
Q Consensus       103 ~p~~~  107 (232)
                      .|-.+
T Consensus        95 ~pdpw   99 (194)
T TIGR00091        95 FPDPW   99 (194)
T ss_pred             CCCcC
Confidence            87544

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=99.27  E-value=8.2e-12  Score=93.27  Aligned_cols=78  Identities=29%  Similarity=0.388  Sum_probs=61.3

Q ss_pred             CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC----C-cceeecccCcc
Q 047897           32 DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP----Q-FDLVVANIPYG  106 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----~-~D~Vi~n~p~~  106 (232)
                      ..|+|+.||.|+.+..+++...+|+|+|+|+..++.|+.|++.+|+.++++++++|+.+....    . +|+|+.+||++
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG   80 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG   80 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence            369999999999999999999999999999999999999999999888999999999886322    2 79999999988


Q ss_pred             cch
Q 047897          107 ISS  109 (232)
Q Consensus       107 ~~~  109 (232)
                      ..+
T Consensus        81 Gp~   83 (163)
T PF09445_consen   81 GPS   83 (163)
T ss_dssp             SGG
T ss_pred             Ccc
Confidence            653

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=4.6e-11  Score=97.23  Aligned_cols=76  Identities=30%  Similarity=0.390  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIP  104 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p  104 (232)
                      .++.+|||+|||+|.++.+.++.+ .+|+|+|+||.+++.+++|++.++++..+.....+..+.+.. +||+|++|+-
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANIL  238 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANIL  238 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehhh
Confidence            478899999999999999999955 679999999999999999999998754344445555555553 8999999973

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=99.27  E-value=2.2e-11  Score=93.56  Aligned_cols=95  Identities=25%  Similarity=0.436  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHhcCCC--CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           15 NQRVLDSIVRKSSIN--PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~--~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ...+.+.+.+.+...  ++.++||+.||+|.++.+.+.++ .+|+.||.|+..+..+++|+...+..++++++.+|+...
T Consensus        25 ~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~  104 (183)
T PF03602_consen   25 TDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKF  104 (183)
T ss_dssp             SHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHH
T ss_pred             cHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHH
Confidence            356777777777643  78899999999999999998865 799999999999999999999988866799999997653


Q ss_pred             ------CCCCcceeecccCcccch
Q 047897           92 ------EFPQFDLVVANIPYGISS  109 (232)
Q Consensus        92 ------~~~~~D~Vi~n~p~~~~~  109 (232)
                            ....||+|+.+|||....
T Consensus       105 l~~~~~~~~~fDiIflDPPY~~~~  128 (183)
T PF03602_consen  105 LLKLAKKGEKFDIIFLDPPYAKGL  128 (183)
T ss_dssp             HHHHHHCTS-EEEEEE--STTSCH
T ss_pred             HHhhcccCCCceEEEECCCcccch
Confidence                  235899999999998774

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.26  E-value=8.8e-11  Score=96.86  Aligned_cols=76  Identities=32%  Similarity=0.368  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP  104 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p  104 (232)
                      .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++..+++..++.+..+|.......+||+|++|+.
T Consensus       158 ~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~  234 (288)
T TIGR00406       158 LKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANIL  234 (288)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecC
Confidence            467899999999999999888754 5899999999999999999998887667888888755444458999999864

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.26  E-value=4.6e-11  Score=93.57  Aligned_cols=70  Identities=26%  Similarity=0.344  Sum_probs=58.4

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeeccc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANI  103 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~  103 (232)
                      +.++.+|||+|||+|..+..+++.  +.+++|+|+|+++++.|+++.      +++.+.++|+.+ +.  .+||+|+++-
T Consensus        41 ~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        41 LPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             cCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            346778999999999999999874  689999999999999999875      347788999887 44  3899999864


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      .
T Consensus       114 v  114 (204)
T TIGR03587       114 V  114 (204)
T ss_pred             h
Confidence            3

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.26  E-value=3.7e-11  Score=105.91  Aligned_cols=94  Identities=21%  Similarity=0.370  Sum_probs=76.5

Q ss_pred             CcccccCCHHH--HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897            8 KGQHILTNQRV--LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI   84 (232)
Q Consensus         8 ~gq~fl~~~~~--~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   84 (232)
                      +|..|..++.+  .+.+++.+.+.++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+++.....  .++++.
T Consensus       242 ~g~~~~v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~--~~v~~~  319 (475)
T PLN02336        242 FGEGFVSTGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK--CSVEFE  319 (475)
T ss_pred             hCCCCCCCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC--CceEEE
Confidence            56666665554  46677777777888999999999999998887 46799999999999999998875432  579999


Q ss_pred             EcCCCCCCCC--Ccceeeccc
Q 047897           85 SKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        85 ~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      .+|+.+.+++  +||+|++.-
T Consensus       320 ~~d~~~~~~~~~~fD~I~s~~  340 (475)
T PLN02336        320 VADCTKKTYPDNSFDVIYSRD  340 (475)
T ss_pred             EcCcccCCCCCCCEEEEEECC
Confidence            9999887653  699999853

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.25  E-value=9e-11  Score=92.15  Aligned_cols=83  Identities=27%  Similarity=0.424  Sum_probs=70.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cC------CeEEEEEcCHHHHHHHHHHHhhcCCCc--cEEEEEcCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VS------KKVHAIEIDERMVEILNRRAADSGFHD--RLNVISKDA   88 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~------~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~~~D~   88 (232)
                      -+..+..+++.++.++||+|||+|.+++.+++  ..      .+|+.+|++++|++.++++....++.+  ++.++.+|+
T Consensus        89 Kd~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA  168 (296)
T KOG1540|consen   89 KDMFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA  168 (296)
T ss_pred             HHHhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc
Confidence            34456778888899999999999999999998  22      789999999999999999997766643  499999999


Q ss_pred             CCCCCC--Ccceeec
Q 047897           89 LKTEFP--QFDLVVA  101 (232)
Q Consensus        89 ~~~~~~--~~D~Vi~  101 (232)
                      +++|++  ++|..+.
T Consensus       169 E~LpFdd~s~D~yTi  183 (296)
T KOG1540|consen  169 EDLPFDDDSFDAYTI  183 (296)
T ss_pred             ccCCCCCCcceeEEE
Confidence            999887  7897664

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=99.24  E-value=2.6e-11  Score=107.94  Aligned_cols=101  Identities=22%  Similarity=0.357  Sum_probs=78.6

Q ss_pred             CCCcccccCCHHHHHHHHHhcCCC-------CCCEEEEEcCCccHhHHHHHhc----------CCeEEEEEcCHHHHHHH
Q 047897            6 KSKGQHILTNQRVLDSIVRKSSIN-------PDDTVLEIGPGTGNLTLKLLEV----------SKKVHAIEIDERMVEIL   68 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~~~~-------~~~~vLDiG~G~G~~t~~l~~~----------~~~v~~vD~~~~~~~~a   68 (232)
                      |++|| |+|++.+++.|++.+...       .+.+|||.|||+|.+...++..          ...++|+|+|+.+++.+
T Consensus         1 K~~Gq-fyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a   79 (524)
T TIGR02987         1 KAYGT-FFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRA   79 (524)
T ss_pred             CCCcc-cCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHH
Confidence            67899 778899999999876322       3458999999999999988762          15789999999999999


Q ss_pred             HHHHhhcCCCccEEEEEcCCCCCC-------CCCcceeecccCcccc
Q 047897           69 NRRAADSGFHDRLNVISKDALKTE-------FPQFDLVVANIPYGIS  108 (232)
Q Consensus        69 ~~~~~~~~~~~~~~~~~~D~~~~~-------~~~~D~Vi~n~p~~~~  108 (232)
                      +.++...+. ..+.+.++|.+...       .+.||+||+||||...
T Consensus        80 ~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~~~fD~IIgNPPy~~~  125 (524)
T TIGR02987        80 KKLLGEFAL-LEINVINFNSLSYVLLNIESYLDLFDIVITNPPYGRL  125 (524)
T ss_pred             HHHHhhcCC-CCceeeecccccccccccccccCcccEEEeCCCcccc
Confidence            999876652 23567777755421       2379999999999864

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.24  E-value=3.5e-11  Score=94.20  Aligned_cols=75  Identities=23%  Similarity=0.290  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC-CCCC----CCCcceeecc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA-LKTE----FPQFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~-~~~~----~~~~D~Vi~n  102 (232)
                      ++.+|||+|||+|.++..+++  ...+|+|+|+++.+++.+++++...+. ++++++++|+ ..++    ..+||.|+++
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~  118 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN  118 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence            577999999999999999987  357899999999999999999988776 5799999999 5443    3479999998


Q ss_pred             cCc
Q 047897          103 IPY  105 (232)
Q Consensus       103 ~p~  105 (232)
                      .|.
T Consensus       119 ~~~  121 (202)
T PRK00121        119 FPD  121 (202)
T ss_pred             CCC
Confidence            653

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.23  E-value=3e-11  Score=110.64  Aligned_cols=95  Identities=18%  Similarity=0.234  Sum_probs=77.0

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~   89 (232)
                      ++.|....+..+..+  .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++|+..+++. .+++++++|+.
T Consensus       522 ~flDqr~~R~~~~~~--~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~  599 (702)
T PRK11783        522 LFLDHRPTRRMIGQM--AKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCL  599 (702)
T ss_pred             ECHHHHHHHHHHHHh--cCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHH
Confidence            444555555555443  257899999999999999999865 47999999999999999999998885 58999999987


Q ss_pred             CCC---CCCcceeecccCcccc
Q 047897           90 KTE---FPQFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~~---~~~~D~Vi~n~p~~~~  108 (232)
                      ++.   ..+||+|++||||...
T Consensus       600 ~~l~~~~~~fDlIilDPP~f~~  621 (702)
T PRK11783        600 AWLKEAREQFDLIFIDPPTFSN  621 (702)
T ss_pred             HHHHHcCCCcCEEEECCCCCCC
Confidence            642   2479999999998664

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.23  E-value=3.1e-11  Score=82.32  Aligned_cols=67  Identities=33%  Similarity=0.520  Sum_probs=56.1

Q ss_pred             EEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCc
Q 047897           35 LEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPY  105 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~  105 (232)
                      ||+|||+|..+..+++. +.+|+++|+++++++.++++...    .++.++.+|+.+++++  +||+|+++-.+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~   70 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVL   70 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHG
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccce
Confidence            89999999999999997 89999999999999999999875    3466999999999875  89999987543

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.22  E-value=4.2e-11  Score=101.32  Aligned_cols=99  Identities=19%  Similarity=0.217  Sum_probs=76.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--   93 (232)
                      ..+++.+.+.++..+ .+|||+|||+|.++..+++...+|+|+|+++++++.+++|+..+++ ++++++.+|+.++..  
T Consensus       184 ~~l~~~v~~~~~~~~-~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~  261 (353)
T TIGR02143       184 IKMLEWACEVTQGSK-GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIRMSAEEFTQAM  261 (353)
T ss_pred             HHHHHHHHHHhhcCC-CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEEcCHHHHHHHH
Confidence            344555555554333 4699999999999999998778999999999999999999999887 479999999976321  


Q ss_pred             ---------------C-CcceeecccCcccchHHH-HHHh
Q 047897           94 ---------------P-QFDLVVANIPYGISSPLV-AKLV  116 (232)
Q Consensus        94 ---------------~-~~D~Vi~n~p~~~~~~~l-~~~~  116 (232)
                                     . .+|+|+.|||.....+.+ ..+.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~d~v~lDPPR~G~~~~~l~~l~  301 (353)
T TIGR02143       262 NGVREFRRLKGIDLKSYNCSTIFVDPPRAGLDPDTCKLVQ  301 (353)
T ss_pred             hhccccccccccccccCCCCEEEECCCCCCCcHHHHHHHH
Confidence                           1 379999999965544444 4443

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.22  E-value=6.2e-11  Score=100.67  Aligned_cols=104  Identities=21%  Similarity=0.242  Sum_probs=79.1

Q ss_pred             ccCCHHHHHHHHHh----cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           12 ILTNQRVLDSIVRK----SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        12 fl~~~~~~~~i~~~----~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      |-.|+.+.+.+++.    +... +.+|||++||+|.++..+++...+|+|+|+++.+++.+++|+..+++ ++++++.+|
T Consensus       185 ~Q~N~~~~e~l~~~v~~~~~~~-~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~~~d  262 (362)
T PRK05031        185 TQPNAAVNEKMLEWALDATKGS-KGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGI-DNVQIIRMS  262 (362)
T ss_pred             eccCHHHHHHHHHHHHHHhhcC-CCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEECC
Confidence            33455555555544    3322 35799999999999999988778999999999999999999998887 489999999


Q ss_pred             CCCCC--C---------------C-CcceeecccCcccchHHH-HHHhc
Q 047897           88 ALKTE--F---------------P-QFDLVVANIPYGISSPLV-AKLVY  117 (232)
Q Consensus        88 ~~~~~--~---------------~-~~D~Vi~n~p~~~~~~~l-~~~~~  117 (232)
                      +.+.-  .               . .||+|+.|||+....+.+ ..+..
T Consensus       263 ~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G~~~~~l~~l~~  311 (362)
T PRK05031        263 AEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAGLDDETLKLVQA  311 (362)
T ss_pred             HHHHHHHHhhcccccccccccccCCCCCEEEECCCCCCCcHHHHHHHHc
Confidence            97631  0               1 489999999986544444 44433

>PRK05785 hypothetical protein; Provisional

Probab=99.22  E-value=5.4e-11  Score=94.67  Aligned_cols=66  Identities=21%  Similarity=0.353  Sum_probs=56.0

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIP  104 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p  104 (232)
                      ++.+|||+|||+|.++..+++. +.+|+|+|+|++|++.+++..         .++++|+++++++  +||+|+++..
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~  119 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFA  119 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecCh
Confidence            4679999999999999999886 589999999999999988641         3578999888764  7999998754

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.21  E-value=1.5e-10  Score=93.62  Aligned_cols=71  Identities=34%  Similarity=0.462  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPY  105 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~  105 (232)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++..+++..++.+..+|.      +||+|++|+..
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~------~fD~Vvani~~  189 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL------KADVIVANILA  189 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC------CcCEEEEcCcH
Confidence            478899999999999999888754 459999999999999999998877644566555543      79999998753

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.20  E-value=2.6e-10  Score=94.94  Aligned_cols=84  Identities=19%  Similarity=0.451  Sum_probs=71.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+.+.+++.++..++.+|||||||+|.++..+++  +..+++++|. +.+++.+++++...++.++++++.+|+.+.+.+
T Consensus       136 ~~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~  214 (306)
T TIGR02716       136 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  214 (306)
T ss_pred             hHHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC
Confidence            3456677777788889999999999999999998  3578999997 789999999999888877899999999877667


Q ss_pred             Ccceeec
Q 047897           95 QFDLVVA  101 (232)
Q Consensus        95 ~~D~Vi~  101 (232)
                      .+|+|+.
T Consensus       215 ~~D~v~~  221 (306)
T TIGR02716       215 EADAVLF  221 (306)
T ss_pred             CCCEEEe
Confidence            7898764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.20  E-value=1.4e-10  Score=96.31  Aligned_cols=86  Identities=22%  Similarity=0.185  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC----CccEEEEEcCCC
Q 047897           17 RVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF----HDRLNVISKDAL   89 (232)
Q Consensus        17 ~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~   89 (232)
                      .+++.+++.+..   .++.+|||+|||+|.++..+++.+.+|+|+|+++.|++.++++....+.    ..++++..+|+.
T Consensus       128 ~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        128 QTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             HHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            455666666543   2577999999999999999999889999999999999999999875421    135788999986


Q ss_pred             CCCCCCcceeeccc
Q 047897           90 KTEFPQFDLVVANI  103 (232)
Q Consensus        90 ~~~~~~~D~Vi~n~  103 (232)
                      +.+ +.||+|++.-
T Consensus       208 ~l~-~~fD~Vv~~~  220 (315)
T PLN02585        208 SLS-GKYDTVTCLD  220 (315)
T ss_pred             hcC-CCcCEEEEcC
Confidence            653 5899998753

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1.9e-10  Score=99.08  Aligned_cols=102  Identities=25%  Similarity=0.355  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +.+++...+.++..++++|||+-||.|.++..++....+|+|+|+++++++.|++|++.++. .|++|+.+|++++... 
T Consensus       279 ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i-~N~~f~~~~ae~~~~~~  357 (432)
T COG2265         279 EKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGI-DNVEFIAGDAEEFTPAW  357 (432)
T ss_pred             HHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHHhhhc
Confidence            33444455566777889999999999999999999999999999999999999999999998 4699999999886432 


Q ss_pred             ----CcceeecccCcccch-HHHHHHhcC
Q 047897           95 ----QFDLVVANIPYGISS-PLVAKLVYG  118 (232)
Q Consensus        95 ----~~D~Vi~n~p~~~~~-~~l~~~~~~  118 (232)
                          .+|.|+.|||-.... ..+..+...
T Consensus       358 ~~~~~~d~VvvDPPR~G~~~~~lk~l~~~  386 (432)
T COG2265         358 WEGYKPDVVVVDPPRAGADREVLKQLAKL  386 (432)
T ss_pred             cccCCCCEEEECCCCCCCCHHHHHHHHhc
Confidence                679999999987666 444444443

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.19  E-value=1.9e-10  Score=92.02  Aligned_cols=91  Identities=24%  Similarity=0.234  Sum_probs=74.0

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ...+...+.+...+...+..+|||+|||+|+-+..++.   ...+|+++|+|+++++.|++++...|+.++++++.+|+.
T Consensus        51 ~v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~  130 (234)
T PLN02781         51 EVPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDAL  130 (234)
T ss_pred             ccCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHH
Confidence            44555555554555556778999999999998888876   257999999999999999999999998788999999998


Q ss_pred             CCC--------CCCcceeeccc
Q 047897           90 KTE--------FPQFDLVVANI  103 (232)
Q Consensus        90 ~~~--------~~~~D~Vi~n~  103 (232)
                      +.-        .++||+|+.+.
T Consensus       131 ~~L~~l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        131 SALDQLLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             HHHHHHHhCCCCCCCCEEEECC
Confidence            741        24799999875

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.18  E-value=1.5e-10  Score=94.81  Aligned_cols=80  Identities=18%  Similarity=0.331  Sum_probs=66.8

Q ss_pred             cCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceee
Q 047897           26 SSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVV  100 (232)
Q Consensus        26 ~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi  100 (232)
                      ..+.++++|||+|||+|..+..++.   ...+|+|+|+++.+++.++++....+. ++++++.+|+.+++++  .||+|+
T Consensus        73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi  151 (272)
T PRK11873         73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVII  151 (272)
T ss_pred             ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEE
Confidence            4567889999999999998877666   235799999999999999999988777 5899999999887754  799999


Q ss_pred             cccCcc
Q 047897          101 ANIPYG  106 (232)
Q Consensus       101 ~n~p~~  106 (232)
                      +|..++
T Consensus       152 ~~~v~~  157 (272)
T PRK11873        152 SNCVIN  157 (272)
T ss_pred             EcCccc
Confidence            886433

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.18  E-value=9.6e-11  Score=99.11  Aligned_cols=99  Identities=26%  Similarity=0.333  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--   93 (232)
                      ..+++.+++.++..++ .|||+.||.|.++..+++...+|+|||+++++++.|++|+..+++ .|++|+.+++.++..  
T Consensus       183 ~~l~~~~~~~l~~~~~-~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~~~~~~  260 (352)
T PF05958_consen  183 EKLYEQALEWLDLSKG-DVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAEDFAKAL  260 (352)
T ss_dssp             HHHHHHHHHHCTT-TT-EEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHHCCCHH
T ss_pred             HHHHHHHHHHhhcCCC-cEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccchhHHH
Confidence            3455555566776655 799999999999999999999999999999999999999999998 689999988765411  


Q ss_pred             ----------------CCcceeecccCcccchHHHHHHh
Q 047897           94 ----------------PQFDLVVANIPYGISSPLVAKLV  116 (232)
Q Consensus        94 ----------------~~~D~Vi~n~p~~~~~~~l~~~~  116 (232)
                                      ..+|+|+.|||-....+.+...+
T Consensus       261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~  299 (352)
T PF05958_consen  261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELI  299 (352)
T ss_dssp             CCS-GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHH
T ss_pred             HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHH
Confidence                            14789999999876665444444

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>TIGR00452 methyltransferase, putative

Probab=99.17  E-value=2.4e-10  Score=94.81  Aligned_cols=98  Identities=14%  Similarity=0.061  Sum_probs=69.6

Q ss_pred             cCCCcccccCCHHHHHH-----HHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC
Q 047897            5 HKSKGQHILTNQRVLDS-----IVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH   78 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~-----i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~   78 (232)
                      +..+-| +.++.++...     ++..+...++++|||||||+|.++..++..+ ..|+|+|.++.|+..++..-...+..
T Consensus        92 ~~~l~~-~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~  170 (314)
T TIGR00452        92 PFELSG-IKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDND  170 (314)
T ss_pred             Cccccc-ccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccC
Confidence            334444 4456666444     4445566678999999999999999888855 57999999999987654332222222


Q ss_pred             ccEEEEEcCCCCCCC-CCcceeeccc
Q 047897           79 DRLNVISKDALKTEF-PQFDLVVANI  103 (232)
Q Consensus        79 ~~~~~~~~D~~~~~~-~~~D~Vi~n~  103 (232)
                      .++.+..+|+.+++. ..||+|+++-
T Consensus       171 ~~v~~~~~~ie~lp~~~~FD~V~s~g  196 (314)
T TIGR00452       171 KRAILEPLGIEQLHELYAFDTVFSMG  196 (314)
T ss_pred             CCeEEEECCHHHCCCCCCcCEEEEcc
Confidence            578899999988764 4899999863

Known examples to date are restricted to the proteobacteria.

>PRK04266 fibrillarin; Provisional

Probab=99.16  E-value=4.5e-10  Score=89.18  Aligned_cols=85  Identities=20%  Similarity=0.316  Sum_probs=67.3

Q ss_pred             HHHHHHHH---hcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           17 RVLDSIVR---KSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        17 ~~~~~i~~---~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +....++.   .+++.++.+|||+|||+|.++..+++.  ..+|+|+|+++.|++.+.+++...   .|+.++.+|+.+.
T Consensus        56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~  132 (226)
T PRK04266         56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKP  132 (226)
T ss_pred             chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCc
Confidence            44444444   578889999999999999999999984  368999999999999888777643   4799999998752


Q ss_pred             ----CC-CCcceeecccC
Q 047897           92 ----EF-PQFDLVVANIP  104 (232)
Q Consensus        92 ----~~-~~~D~Vi~n~p  104 (232)
                          +. +.+|+|+++++
T Consensus       133 ~~~~~l~~~~D~i~~d~~  150 (226)
T PRK04266        133 ERYAHVVEKVDVIYQDVA  150 (226)
T ss_pred             chhhhccccCCEEEECCC
Confidence                11 36899998765

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.16  E-value=1.9e-10  Score=105.44  Aligned_cols=95  Identities=22%  Similarity=0.361  Sum_probs=81.1

Q ss_pred             CCHHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhc-----------------------------------------
Q 047897           14 TNQRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEV-----------------------------------------   51 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~-----------------------------------------   51 (232)
                      ..+.++..|+...+. .++..++|.+||+|.+..+.+..                                         
T Consensus       173 l~etlAaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~  252 (702)
T PRK11783        173 LKENLAAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGL  252 (702)
T ss_pred             CcHHHHHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            347899999998887 66889999999999999887541                                         


Q ss_pred             ---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC----CcceeecccCcccc
Q 047897           52 ---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP----QFDLVVANIPYGIS  108 (232)
Q Consensus        52 ---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----~~D~Vi~n~p~~~~  108 (232)
                         ..+++|+|+|+.+++.|++|+...|+.+.+++.++|+.+++.+    ++|+|++||||...
T Consensus       253 ~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r  316 (702)
T PRK11783        253 AELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER  316 (702)
T ss_pred             cccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc
Confidence               1269999999999999999999999877899999999887543    59999999999744

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.16  E-value=2.9e-10  Score=90.96  Aligned_cols=89  Identities=24%  Similarity=0.441  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .......+++.+...++.+|||+|||+|.++..++..   ..+++++|+++.+++.+++++...+...++.++.+|+.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         36 HRVWRRKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            3456667777777777889999999999999999883   3899999999999999999987655546799999999887


Q ss_pred             CCC--Ccceeeccc
Q 047897           92 EFP--QFDLVVANI  103 (232)
Q Consensus        92 ~~~--~~D~Vi~n~  103 (232)
                      +.+  .+|+|+++.
T Consensus       116 ~~~~~~~D~I~~~~  129 (239)
T PRK00216        116 PFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCCCCccEEEEec
Confidence            643  799998753

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.15  E-value=1.6e-10  Score=88.08  Aligned_cols=82  Identities=23%  Similarity=0.280  Sum_probs=61.4

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-CCCcceee-cc
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-FPQFDLVV-AN  102 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~D~Vi-~n  102 (232)
                      .++-..-.++||+|||.|.+|..|+.+..+++++|+++.+++.|+++....   ++++++++|+.+.. .+.||+|+ +-
T Consensus        38 aLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~~P~~~FDLIV~SE  114 (201)
T PF05401_consen   38 ALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEFWPEGRFDLIVLSE  114 (201)
T ss_dssp             HHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT---SS-EEEEEEES
T ss_pred             hcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCCCCCCCeeEEEEeh
Confidence            344344568999999999999999999999999999999999999999764   58999999998764 34899766 46


Q ss_pred             cCcccch
Q 047897          103 IPYGISS  109 (232)
Q Consensus       103 ~p~~~~~  109 (232)
                      +-|+.+.
T Consensus       115 VlYYL~~  121 (201)
T PF05401_consen  115 VLYYLDD  121 (201)
T ss_dssp             -GGGSSS
T ss_pred             HhHcCCC
Confidence            7788764

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PRK04148 hypothetical protein; Provisional

Probab=99.15  E-value=4.4e-10  Score=81.06  Aligned_cols=80  Identities=23%  Similarity=0.325  Sum_probs=65.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      .+.+.+.+.+...++.+++|||||+|. ++..|.+.+..|+|+|+++..++.++++.        ++++.+|.++.+.+ 
T Consensus         3 ~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~   74 (134)
T PRK04148          3 TIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEI   74 (134)
T ss_pred             HHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHH
Confidence            456666666655567889999999996 88888888999999999999988887652        67999999988765 


Q ss_pred             --Ccceeec-ccC
Q 047897           95 --QFDLVVA-NIP  104 (232)
Q Consensus        95 --~~D~Vi~-n~p  104 (232)
                        .+|+|.+ ++|
T Consensus        75 y~~a~liysirpp   87 (134)
T PRK04148         75 YKNAKLIYSIRPP   87 (134)
T ss_pred             HhcCCEEEEeCCC
Confidence              6899987 555

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.15  E-value=2.2e-10  Score=95.76  Aligned_cols=82  Identities=20%  Similarity=0.209  Sum_probs=62.9

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL   98 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~   98 (232)
                      .+...++..++.+|||||||+|.++..++..+ ..|+|+|.++.++..++......+...++.++.+|+.+++.+ .||+
T Consensus       113 ~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~  192 (322)
T PRK15068        113 RVLPHLSPLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDT  192 (322)
T ss_pred             HHHHhhCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCE
Confidence            34445555578899999999999999998854 569999999999876554433222225799999999988754 7999


Q ss_pred             eecc
Q 047897           99 VVAN  102 (232)
Q Consensus        99 Vi~n  102 (232)
                      |++.
T Consensus       193 V~s~  196 (322)
T PRK15068        193 VFSM  196 (322)
T ss_pred             EEEC
Confidence            9984

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.14  E-value=1.7e-10  Score=87.76  Aligned_cols=74  Identities=27%  Similarity=0.304  Sum_probs=59.8

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC----CCCC
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK----TEFP   94 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~----~~~~   94 (232)
                      +.|.+++  .++.+|||+|||.|.+...|.+ ++.+.+|+|+|++.+..|.++        .+.++++|+.+    ++..
T Consensus         5 ~~I~~~I--~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r--------Gv~Viq~Dld~gL~~f~d~   74 (193)
T PF07021_consen    5 QIIAEWI--EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR--------GVSVIQGDLDEGLADFPDQ   74 (193)
T ss_pred             HHHHHHc--CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc--------CCCEEECCHHHhHhhCCCC
Confidence            3455555  4789999999999999999988 788999999999988877654        36799999875    3445


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      +||.||.+-
T Consensus        75 sFD~VIlsq   83 (193)
T PF07021_consen   75 SFDYVILSQ   83 (193)
T ss_pred             CccEEehHh
Confidence            899999753

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=99.13  E-value=7.5e-10  Score=84.12  Aligned_cols=93  Identities=28%  Similarity=0.423  Sum_probs=80.4

Q ss_pred             HHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-
Q 047897           16 QRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-   91 (232)
                      ..+.+.+.+.+..  -.|.++||+-+|+|.++.+.+.+ ..+++.||.|...+..+++|....+...+++++..|+... 
T Consensus        27 drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L  106 (187)
T COG0742          27 DRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRAL  106 (187)
T ss_pred             hHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHH
Confidence            5678888888865  47889999999999999999996 5899999999999999999999988778899999999854 


Q ss_pred             ---CCC-CcceeecccCcccc
Q 047897           92 ---EFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        92 ---~~~-~~D~Vi~n~p~~~~  108 (232)
                         ... +||+|+.+|||+..
T Consensus       107 ~~~~~~~~FDlVflDPPy~~~  127 (187)
T COG0742         107 KQLGTREPFDLVFLDPPYAKG  127 (187)
T ss_pred             HhcCCCCcccEEEeCCCCccc
Confidence               111 49999999999844

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.12  E-value=1.2e-10  Score=93.20  Aligned_cols=89  Identities=26%  Similarity=0.367  Sum_probs=68.8

Q ss_pred             CCHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           14 TNQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      ..+.+...+++.+..   ..+.+|||+|||+|.++..+++.  ..+++++|+++.+++.++++..     +++.++.+|+
T Consensus        15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~   89 (240)
T TIGR02072        15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA   89 (240)
T ss_pred             HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch
Confidence            334555666655542   33468999999999999999883  4678999999999999988764     3688999999


Q ss_pred             CCCCCC--CcceeecccCccc
Q 047897           89 LKTEFP--QFDLVVANIPYGI  107 (232)
Q Consensus        89 ~~~~~~--~~D~Vi~n~p~~~  107 (232)
                      .+.+.+  +||+|+++...++
T Consensus        90 ~~~~~~~~~fD~vi~~~~l~~  110 (240)
T TIGR02072        90 EKLPLEDSSFDLIVSNLALQW  110 (240)
T ss_pred             hhCCCCCCceeEEEEhhhhhh
Confidence            987643  7999999865543

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK06202 hypothetical protein; Provisional

Probab=99.11  E-value=5.5e-10  Score=89.35  Aligned_cols=76  Identities=24%  Similarity=0.245  Sum_probs=57.3

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh----c--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--CCCccee
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE----V--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--FPQFDLV   99 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~----~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~D~V   99 (232)
                      ..++.+|||+|||+|.++..+++    .  ..+|+|+|+++++++.|+++....    ++++..+|+..++  ..+||+|
T Consensus        58 ~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V  133 (232)
T PRK06202         58 ADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVV  133 (232)
T ss_pred             CCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEE
Confidence            34667999999999999988875    1  359999999999999999886543    3555555544443  3489999


Q ss_pred             ecccCccc
Q 047897          100 VANIPYGI  107 (232)
Q Consensus       100 i~n~p~~~  107 (232)
                      +++..++.
T Consensus       134 ~~~~~lhh  141 (232)
T PRK06202        134 TSNHFLHH  141 (232)
T ss_pred             EECCeeec
Confidence            99876543

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.11  E-value=5.4e-10  Score=83.52  Aligned_cols=158  Identities=22%  Similarity=0.332  Sum_probs=95.0

Q ss_pred             HHHHHHHhcC---CCCC-CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           18 VLDSIVRKSS---INPD-DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        18 ~~~~i~~~~~---~~~~-~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +++.+.+...   +.+. ++|||+|||.|.+...|++.  ...++|+|.++.+++.|+..++..++++.++|.+.|+.+.
T Consensus        51 iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   51 IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP  130 (227)
T ss_pred             HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence            4444444433   3333 49999999999999999993  3569999999999999999999999866699999999986


Q ss_pred             CCC--CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhh----eeeee--eeeEEEE
Q 047897           92 EFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAV----NVKLV--ADVEFVM  163 (232)
Q Consensus        92 ~~~--~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~----~~~~~--~~~~~~~  163 (232)
                      .+.  +||+|.--=.+...+      +.  +......+.+.....++++++.|--....+..    ++..+  ...+.+.
T Consensus       131 ~~~~~qfdlvlDKGT~DAis------Ls--~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN~T~dELv~~f~~~~f~~~~  202 (227)
T KOG1271|consen  131 DFLSGQFDLVLDKGTLDAIS------LS--PDGPVGRLVVYLDSVEKLLSPGGIFVITSCNFTKDELVEEFENFNFEYLS  202 (227)
T ss_pred             cccccceeEEeecCceeeee------cC--CCCcccceeeehhhHhhccCCCcEEEEEecCccHHHHHHHHhcCCeEEEE
Confidence            543  677766321111000      00  01111112344556777777444211111100    01111  1255666


Q ss_pred             EecCCCcccCCCccEEEEEE
Q 047897          164 DVSKRDFLPCPKVDSSVVII  183 (232)
Q Consensus       164 ~~~~~~f~P~p~v~s~~~~~  183 (232)
                      .+|...|.---++.+++..+
T Consensus       203 tvp~ptF~FgG~~G~tvt~v  222 (227)
T KOG1271|consen  203 TVPTPTFMFGGSVGSTVTSV  222 (227)
T ss_pred             eeccceEEeccccccEEEEE
Confidence            77776776666666555433

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=99.11  E-value=4.2e-10  Score=87.34  Aligned_cols=81  Identities=27%  Similarity=0.440  Sum_probs=61.8

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcceeecccC
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFDLVVANIP  104 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D~Vi~n~p  104 (232)
                      ..+++.|+|..||.|.++..+++  .++.|+|+|++|.+++.++++++.+++.+++..+++|+.++.. ..+|.|++|+|
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            46899999999999999999998  7789999999999999999999999998889999999998864 48999999998


Q ss_pred             cccc
Q 047897          105 YGIS  108 (232)
Q Consensus       105 ~~~~  108 (232)
                      ....
T Consensus       179 ~~~~  182 (200)
T PF02475_consen  179 ESSL  182 (200)
T ss_dssp             SSGG
T ss_pred             HHHH
Confidence            5443

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK06922 hypothetical protein; Provisional

Probab=99.11  E-value=3.5e-10  Score=100.63  Aligned_cols=79  Identities=25%  Similarity=0.437  Sum_probs=65.5

Q ss_pred             cCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--C--CCccee
Q 047897           26 SSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--F--PQFDLV   99 (232)
Q Consensus        26 ~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~--~~~D~V   99 (232)
                      ++..++.+|||+|||+|.++..+++  ++.+|+|+|+++.|++.|+++....+  .++.++++|+.+++  +  .+||+|
T Consensus       414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvV  491 (677)
T PRK06922        414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTI  491 (677)
T ss_pred             hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEE
Confidence            3445688999999999999988886  46899999999999999999876554  46889999998765  2  379999


Q ss_pred             ecccCcc
Q 047897          100 VANIPYG  106 (232)
Q Consensus       100 i~n~p~~  106 (232)
                      +++.+++
T Consensus       492 Vsn~vLH  498 (677)
T PRK06922        492 VYSSILH  498 (677)
T ss_pred             EEchHHH
Confidence            9987655

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.10  E-value=6.1e-10  Score=95.19  Aligned_cols=81  Identities=28%  Similarity=0.350  Sum_probs=68.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      .++.+++.+++.++.+|||||||+|.++..+++ .+.+|+|+|+|+++++.++++...  .  ++++..+|+.+.+ ++|
T Consensus       155 k~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~--l--~v~~~~~D~~~l~-~~f  229 (383)
T PRK11705        155 KLDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAG--L--PVEIRLQDYRDLN-GQF  229 (383)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc--C--eEEEEECchhhcC-CCC
Confidence            455677788888999999999999999999987 578999999999999999998853  2  4888999987763 589


Q ss_pred             ceeeccc
Q 047897           97 DLVVANI  103 (232)
Q Consensus        97 D~Vi~n~  103 (232)
                      |.|+++.
T Consensus       230 D~Ivs~~  236 (383)
T PRK11705        230 DRIVSVG  236 (383)
T ss_pred             CEEEEeC
Confidence            9999864

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.10  E-value=5e-10  Score=89.03  Aligned_cols=71  Identities=28%  Similarity=0.483  Sum_probs=61.9

Q ss_pred             CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897           32 DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN  102 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n  102 (232)
                      ++|||||||+|..+..+++.  +.+|+|+|+|+++++.+++++...|+.++++++.+|+.+.+.+ +||+|+++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~   74 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF   74 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehH
Confidence            36999999999999999873  5799999999999999999998888877899999999766543 79999974

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.10  E-value=4.1e-10  Score=99.25  Aligned_cols=90  Identities=18%  Similarity=0.215  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC--CCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK--TEF   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~--~~~   93 (232)
                      ......+++.+...++.+|||||||+|.++..+++...+|+|+|+++.+++.+++....   .++++++++|+.+  .++
T Consensus        23 ~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~   99 (475)
T PLN02336         23 KEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNI   99 (475)
T ss_pred             chhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCC
Confidence            34456777777766778999999999999999999888999999999999987664322   2579999999964  333


Q ss_pred             --CCcceeecccCcccc
Q 047897           94 --PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 --~~~D~Vi~n~p~~~~  108 (232)
                        .+||+|+++.+++..
T Consensus       100 ~~~~fD~I~~~~~l~~l  116 (475)
T PLN02336        100 SDGSVDLIFSNWLLMYL  116 (475)
T ss_pred             CCCCEEEEehhhhHHhC
Confidence              379999998876543

>PRK08317 hypothetical protein; Provisional

Probab=99.09  E-value=1.1e-09  Score=87.51  Aligned_cols=88  Identities=27%  Similarity=0.385  Sum_probs=71.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ....+.+++.+.+.++.+|||+|||+|.++..+++.   ..+++|+|+++.+++.++++....+  .++.++.+|+.+.+
T Consensus         5 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~   82 (241)
T PRK08317          5 RRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLG--PNVEFVRGDADGLP   82 (241)
T ss_pred             HHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCC--CceEEEecccccCC
Confidence            345667778888888999999999999999999873   4799999999999999999843322  57999999998765


Q ss_pred             C--CCcceeecccCc
Q 047897           93 F--PQFDLVVANIPY  105 (232)
Q Consensus        93 ~--~~~D~Vi~n~p~  105 (232)
                      .  +.||.|+++..+
T Consensus        83 ~~~~~~D~v~~~~~~   97 (241)
T PRK08317         83 FPDGSFDAVRSDRVL   97 (241)
T ss_pred             CCCCCceEEEEechh
Confidence            4  379999986543

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.09  E-value=5.5e-10  Score=93.43  Aligned_cols=87  Identities=20%  Similarity=0.296  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +.+.+.+++.+.+ .++.+|||+|||+|.++..+++  .+.+|+++|.++++++.++++...    .+++++.+|+.+.+
T Consensus        98 e~~r~~~l~~~~l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp  173 (340)
T PLN02490         98 EDMRDDALEPADLSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLP  173 (340)
T ss_pred             HHHHHHHHhhcccCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCC
Confidence            4455556666654 3578999999999999998887  357999999999999999998642    46889999999877


Q ss_pred             CC--CcceeecccCcc
Q 047897           93 FP--QFDLVVANIPYG  106 (232)
Q Consensus        93 ~~--~~D~Vi~n~p~~  106 (232)
                      ++  .||+|+++..++
T Consensus       174 ~~~~sFDvVIs~~~L~  189 (340)
T PLN02490        174 FPTDYADRYVSAGSIE  189 (340)
T ss_pred             CCCCceeEEEEcChhh
Confidence            54  799999875543

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.08  E-value=2.8e-10  Score=89.85  Aligned_cols=71  Identities=27%  Similarity=0.358  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-c----cEEEEEcCCCCCCCCCcceeecc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-D----RLNVISKDALKTEFPQFDLVVAN  102 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~----~~~~~~~D~~~~~~~~~D~Vi~n  102 (232)
                      |.+|||+|||.|.++..|++.++.|+|+|.++.+++.|++........ .    ++++.+.|+++... .||.|+|.
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~-~fDaVvcs  165 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTG-KFDAVVCS  165 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhccc-ccceeeeH
Confidence            477999999999999999999999999999999999999995443221 2    46677777766643 59999984

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.07  E-value=1.4e-09  Score=85.71  Aligned_cols=85  Identities=15%  Similarity=0.044  Sum_probs=62.9

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-----------CCCccEEEEEc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-----------GFHDRLNVISK   86 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~   86 (232)
                      .+...+..+...++.+|||+|||.|..+..|++.+..|+|+|+|+.+++.+.......           .-..+++++++
T Consensus        22 ~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  101 (213)
T TIGR03840        22 LLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCG  101 (213)
T ss_pred             HHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEc
Confidence            3434444444346779999999999999999999999999999999999864422110           00146899999


Q ss_pred             CCCCCCC---CCcceeecc
Q 047897           87 DALKTEF---PQFDLVVAN  102 (232)
Q Consensus        87 D~~~~~~---~~~D~Vi~n  102 (232)
                      |+.+++.   +.||.|+-.
T Consensus       102 D~~~~~~~~~~~fD~i~D~  120 (213)
T TIGR03840       102 DFFALTAADLGPVDAVYDR  120 (213)
T ss_pred             cCCCCCcccCCCcCEEEec
Confidence            9998863   368877753

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.07  E-value=1.4e-09  Score=89.05  Aligned_cols=68  Identities=16%  Similarity=0.348  Sum_probs=56.9

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc-----CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeec
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV-----SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVA  101 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~  101 (232)
                      ..+.+|||+|||+|.++..+++.     +..++|+|+|+.+++.|+++.      +++.+..+|+.+++++  +||+|++
T Consensus        84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~  157 (272)
T PRK11088         84 EKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIR  157 (272)
T ss_pred             CCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEE
Confidence            35578999999999999998863     247999999999999998764      4688999999987764  7999997


Q ss_pred             c
Q 047897          102 N  102 (232)
Q Consensus       102 n  102 (232)
                      .
T Consensus       158 ~  158 (272)
T PRK11088        158 I  158 (272)
T ss_pred             e
Confidence            5

>PRK04457 spermidine synthase; Provisional

Probab=99.05  E-value=2.2e-09  Score=87.22  Aligned_cols=75  Identities=19%  Similarity=0.285  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCCcceeeccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQFDLVVANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~~D~Vi~n~  103 (232)
                      .++.+|||||||.|.++..+++  +..+++++|+|+++++.|++++...+..++++++.+|+.++-   .++||+|++|.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            3567899999999999999887  467999999999999999999875544468999999996641   24799999874

>PLN02476 O-methyltransferase

Probab=99.05  E-value=1.8e-09  Score=87.71  Aligned_cols=92  Identities=18%  Similarity=0.156  Sum_probs=76.4

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ...+...+.+.-.+...+..+|||||+|+|+.|..++.   ...+|+++|.+++..+.|+++++..|+.++++++.||+.
T Consensus       101 ~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~  180 (278)
T PLN02476        101 QVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAA  180 (278)
T ss_pred             ccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHH
Confidence            44566666666566666788999999999999999987   356899999999999999999999999889999999997


Q ss_pred             CCC--------CCCcceeecccC
Q 047897           90 KTE--------FPQFDLVVANIP  104 (232)
Q Consensus        90 ~~~--------~~~~D~Vi~n~p  104 (232)
                      +.-        .++||+|+.+.+
T Consensus       181 e~L~~l~~~~~~~~FD~VFIDa~  203 (278)
T PLN02476        181 ESLKSMIQNGEGSSYDFAFVDAD  203 (278)
T ss_pred             HHHHHHHhcccCCCCCEEEECCC
Confidence            641        247999998764

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=2.7e-09  Score=91.53  Aligned_cols=121  Identities=23%  Similarity=0.202  Sum_probs=89.0

Q ss_pred             cCCCcccccCCHHHH----HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897            5 HKSKGQHILTNQRVL----DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR   80 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~----~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~   80 (232)
                      +-+-|--|-+|-..+    ..+-+++++..+..++|+.||+|.++.++++...+|+|||++++.++-|++|+..+|+ .|
T Consensus       354 ~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngi-sN  432 (534)
T KOG2187|consen  354 RISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGI-SN  432 (534)
T ss_pred             EECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCc-cc
Confidence            334444455554433    3444677888889999999999999999999999999999999999999999999998 69


Q ss_pred             EEEEEcCCCCCCC-------CCcc-eeecccCcccchHHHHHHhcCCCCccceE
Q 047897           81 LNVISKDALKTEF-------PQFD-LVVANIPYGISSPLVAKLVYGTKSFRSAT  126 (232)
Q Consensus        81 ~~~~~~D~~~~~~-------~~~D-~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~  126 (232)
                      ++|+.|-+++.-.       +.-+ ++|.|+|-......+.+.+.........+
T Consensus       433 a~Fi~gqaE~~~~sl~~~~~~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~~rlv  486 (534)
T KOG2187|consen  433 ATFIVGQAEDLFPSLLTPCCDSETLVAIIDPPRKGLHMKVIKALRAYKNPRRLV  486 (534)
T ss_pred             eeeeecchhhccchhcccCCCCCceEEEECCCcccccHHHHHHHHhccCccceE
Confidence            9999997766421       1234 78889997665555544443333333333

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=1.3e-09  Score=81.53  Aligned_cols=79  Identities=25%  Similarity=0.299  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCCcceeecccCc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQFDLVVANIPY  105 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~~D~Vi~n~p~  105 (232)
                      ....++|||||+|..+..+++   ....+.+.|+++.+++...+.++.++.  +++.++.|..+- ..++.|+++.|+||
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~l~~~~VDvLvfNPPY  120 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPY  120 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhhhccCCccEEEECCCc
Confidence            367899999999999999988   456788999999999999999999874  589999998774 33689999999999


Q ss_pred             ccchH
Q 047897          106 GISSP  110 (232)
Q Consensus       106 ~~~~~  110 (232)
                      -.+++
T Consensus       121 Vpt~~  125 (209)
T KOG3191|consen  121 VPTSD  125 (209)
T ss_pred             CcCCc
Confidence            87753

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=99.03  E-value=4.2e-09  Score=91.83  Aligned_cols=130  Identities=16%  Similarity=0.143  Sum_probs=92.8

Q ss_pred             HHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           19 LDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        19 ~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      ....+..+  ++.++++|||+|+|+|.-|..+++   ....|+++|+++..++.+++++...|+ .++.+.+.|+..+..
T Consensus       100 S~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~  178 (470)
T PRK11933        100 SMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGA  178 (470)
T ss_pred             HHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhh
Confidence            33334455  778999999999999999999988   246899999999999999999999998 579999999886532


Q ss_pred             ---CCcceeecccCcccc-----hHHHHHHhcCCCCccceEehhHHHHH---HHHhcCCCCCcccchhh
Q 047897           94 ---PQFDLVVANIPYGIS-----SPLVAKLVYGTKSFRSATLLLQKEFA---RRLLASPGDSEFNRLAV  151 (232)
Q Consensus        94 ---~~~D~Vi~n~p~~~~-----~~~l~~~~~~~~~~~~~~~~~q~e~~---~rl~~~~g~~~~~~~~~  151 (232)
                         ..||.|+.+.|....     .+.+.+.... . ........|+++.   -+++.++|...|+++++
T Consensus       179 ~~~~~fD~ILvDaPCSG~G~~rk~p~~~~~~s~-~-~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~  245 (470)
T PRK11933        179 ALPETFDAILLDAPCSGEGTVRKDPDALKNWSP-E-SNLEIAATQRELIESAFHALKPGGTLVYSTCTL  245 (470)
T ss_pred             hchhhcCeEEEcCCCCCCcccccCHHHhhhCCH-H-HHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCC
Confidence               369999999998744     1211111000 0 0011224566663   35666777788888874

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=99.03  E-value=1.2e-09  Score=89.53  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=75.6

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      +-|-+++++++.+.+.+++.++|.+||.|+.|..+++.   ..+|+|+|.|+.+++.+++++.. .  ++++++++|+.+
T Consensus         3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~-~--~ri~~i~~~f~~   79 (296)
T PRK00050          3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP-F--GRFTLVHGNFSN   79 (296)
T ss_pred             CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc-C--CcEEEEeCCHHH
Confidence            45788999999999889999999999999999999984   47999999999999999998865 2  689999999987


Q ss_pred             CCC------CCcceeecccC
Q 047897           91 TEF------PQFDLVVANIP  104 (232)
Q Consensus        91 ~~~------~~~D~Vi~n~p  104 (232)
                      +..      .++|.|+.|+-
T Consensus        80 l~~~l~~~~~~vDgIl~DLG   99 (296)
T PRK00050         80 LKEVLAEGLGKVDGILLDLG   99 (296)
T ss_pred             HHHHHHcCCCccCEEEECCC
Confidence            521      26899998863

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.02  E-value=2.7e-09  Score=84.34  Aligned_cols=82  Identities=17%  Similarity=0.082  Sum_probs=61.2

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-----------CCCccEEEEEcCC
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-----------GFHDRLNVISKDA   88 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~~~~D~   88 (232)
                      ...+..+.+.++.+|||+|||.|..+..|++.+.+|+|+|+++.+++.+.......           -...++++.++|+
T Consensus        27 ~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~  106 (218)
T PRK13255         27 QKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDF  106 (218)
T ss_pred             HHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcc
Confidence            33444444456789999999999999999999999999999999999864321110           0125789999999


Q ss_pred             CCCCC---CCcceeec
Q 047897           89 LKTEF---PQFDLVVA  101 (232)
Q Consensus        89 ~~~~~---~~~D~Vi~  101 (232)
                      .+++.   +.||.|+-
T Consensus       107 ~~l~~~~~~~fd~v~D  122 (218)
T PRK13255        107 FALTAADLADVDAVYD  122 (218)
T ss_pred             cCCCcccCCCeeEEEe
Confidence            98843   36787774

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.01  E-value=5.6e-10  Score=87.20  Aligned_cols=75  Identities=40%  Similarity=0.504  Sum_probs=64.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--------CCCCcc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--------EFPQFD   97 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--------~~~~~D   97 (232)
                      ....+|||||||+|+-|..+++   ...+|+.+|++++..+.|++++...|+.++++++.+|+.+.        +.++||
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            3566999999999999999998   36899999999999999999999999888999999999863        123799


Q ss_pred             eeeccc
Q 047897           98 LVVANI  103 (232)
Q Consensus        98 ~Vi~n~  103 (232)
                      +|+.+-
T Consensus       124 ~VFiDa  129 (205)
T PF01596_consen  124 FVFIDA  129 (205)
T ss_dssp             EEEEES
T ss_pred             EEEEcc
Confidence            999874

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.00  E-value=2.5e-09  Score=84.68  Aligned_cols=85  Identities=22%  Similarity=0.380  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-C--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-S--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ......+++.+...++.+|||+|||+|..+..+++. .  .+++++|+++.+++.++++..   ...++.++.+|+.+.+
T Consensus        25 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~  101 (223)
T TIGR01934        25 RLWRRRAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALP  101 (223)
T ss_pred             HHHHHHHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCC
Confidence            456666777776668889999999999999999883 2  489999999999999999876   2257999999998876


Q ss_pred             CC--Ccceeeccc
Q 047897           93 FP--QFDLVVANI  103 (232)
Q Consensus        93 ~~--~~D~Vi~n~  103 (232)
                      .+  .+|+|+++.
T Consensus       102 ~~~~~~D~i~~~~  114 (223)
T TIGR01934       102 FEDNSFDAVTIAF  114 (223)
T ss_pred             CCCCcEEEEEEee
Confidence            53  799998764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.98  E-value=2.4e-09  Score=91.31  Aligned_cols=99  Identities=21%  Similarity=0.293  Sum_probs=76.6

Q ss_pred             CCHHHHHHHHHhcCCC-CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .++.+...+++.+... ++.+|||++||+|.++..++..  ..+|+++|+++.+++.+++|++.+++ ++++++++|+..
T Consensus        40 ~nrdl~~~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~-~~~~v~~~Da~~  118 (382)
T PRK04338         40 LNRDISVLVLRAFGPKLPRESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGL-ENEKVFNKDANA  118 (382)
T ss_pred             chhhHHHHHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CceEEEhhhHHH
Confidence            3455555566655432 3468999999999999999873  34899999999999999999998887 468899999976


Q ss_pred             CC--CCCcceeecccCcccchHHHHH
Q 047897           91 TE--FPQFDLVVANIPYGISSPLVAK  114 (232)
Q Consensus        91 ~~--~~~~D~Vi~n~p~~~~~~~l~~  114 (232)
                      +.  ...||+|+.|+| +...+.+..
T Consensus       119 ~l~~~~~fD~V~lDP~-Gs~~~~l~~  143 (382)
T PRK04338        119 LLHEERKFDVVDIDPF-GSPAPFLDS  143 (382)
T ss_pred             HHhhcCCCCEEEECCC-CCcHHHHHH
Confidence            43  247999999975 665566544

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=98.98  E-value=2.2e-09  Score=82.71  Aligned_cols=83  Identities=20%  Similarity=0.276  Sum_probs=64.7

Q ss_pred             cCCHHHHHHHHHhcCCCC--CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           13 LTNQRVLDSIVRKSSINP--DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~--~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .++.++.++-++.+++.+  ..-|||||||+|.-+..+.+.+...+|+|+|+.|++.|.+..-+      -.++.+|.-+
T Consensus        31 ~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~  104 (270)
T KOG1541|consen   31 LIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGE  104 (270)
T ss_pred             eehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCC
Confidence            455677888888887765  67899999999999999998899999999999999999974321      3467777643


Q ss_pred             -CCCC--Ccceeec
Q 047897           91 -TEFP--QFDLVVA  101 (232)
Q Consensus        91 -~~~~--~~D~Vi~  101 (232)
                       +|+.  .||-+|+
T Consensus       105 GlpfrpGtFDg~IS  118 (270)
T KOG1541|consen  105 GLPFRPGTFDGVIS  118 (270)
T ss_pred             CCCCCCCccceEEE
Confidence             4443  7996665

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.97  E-value=2.9e-09  Score=82.84  Aligned_cols=79  Identities=30%  Similarity=0.348  Sum_probs=60.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-C---CC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-T---EF   93 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~---~~   93 (232)
                      ++.+.+.+.  ++++|||+|||+|.++..+++ .+..++|+|+++++++.++++        +++++.+|+.+ .   +.
T Consensus         4 ~~~i~~~i~--~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~   73 (194)
T TIGR02081         4 LESILNLIP--PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPD   73 (194)
T ss_pred             HHHHHHhcC--CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCC
Confidence            345555553  677999999999999998876 456889999999999887642        36788888865 2   22


Q ss_pred             CCcceeecccCccc
Q 047897           94 PQFDLVVANIPYGI  107 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~  107 (232)
                      .+||+|+++.+++.
T Consensus        74 ~sfD~Vi~~~~l~~   87 (194)
T TIGR02081        74 KSFDYVILSQTLQA   87 (194)
T ss_pred             CCcCEEEEhhHhHc
Confidence            37999999866543

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.97  E-value=3.4e-09  Score=83.35  Aligned_cols=64  Identities=17%  Similarity=0.271  Sum_probs=51.9

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----------CC
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----------FP   94 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----------~~   94 (232)
                      +.++.+|||+|||+|.++..+++.   ...|+|+|+++ +          ... ++++++++|+.+.+          ..
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCC
Confidence            467889999999999999999883   36899999988 1          112 46899999999842          34


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      .+|+|++|+
T Consensus       117 ~~D~V~S~~  125 (209)
T PRK11188        117 KVQVVMSDM  125 (209)
T ss_pred             CCCEEecCC
Confidence            799999987

>PTZ00146 fibrillarin; Provisional

Probab=98.97  E-value=4.4e-09  Score=85.67  Aligned_cols=85  Identities=22%  Similarity=0.339  Sum_probs=64.4

Q ss_pred             HHHHHHH---HhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           17 RVLDSIV---RKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        17 ~~~~~i~---~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+.|+   +.+.+.++++|||+|||+|.++..+++.   ...|+|+|+++.+.+.+.+.+...   .|+.++.+|+..
T Consensus       116 Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~  192 (293)
T PTZ00146        116 KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARY  192 (293)
T ss_pred             HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccC
Confidence            4565664   3456789999999999999999999994   468999999998665555444322   478999999864


Q ss_pred             C-----CCCCcceeecccC
Q 047897           91 T-----EFPQFDLVVANIP  104 (232)
Q Consensus        91 ~-----~~~~~D~Vi~n~p  104 (232)
                      .     ..+.+|+|+++..
T Consensus       193 p~~y~~~~~~vDvV~~Dva  211 (293)
T PTZ00146        193 PQKYRMLVPMVDVIFADVA  211 (293)
T ss_pred             hhhhhcccCCCCEEEEeCC
Confidence            3     2347999999874

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.97  E-value=7.5e-10  Score=83.14  Aligned_cols=72  Identities=25%  Similarity=0.406  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeeccc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANI  103 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~  103 (232)
                      .+.+.|+|+|+|.++...++...+|+++|.||.....|.+|+.-.|. .|++++.+|+.+++++..|+|+|-+
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~fe~ADvvicEm  104 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDFENADVVICEM  104 (252)
T ss_pred             hhceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccccccceeHHHH
Confidence            47899999999999999999999999999999999999999887777 6899999999999999899999854

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.97  E-value=1.1e-10  Score=80.81  Aligned_cols=70  Identities=34%  Similarity=0.465  Sum_probs=46.2

Q ss_pred             EEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC---CCCCCC-CCcceeecccCc
Q 047897           35 LEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD---ALKTEF-PQFDLVVANIPY  105 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D---~~~~~~-~~~D~Vi~n~p~  105 (232)
                      ||||||+|.++..+++.  ..+++|+|+|+.+++.+++++...+. .+......+   ..+... .+||+|+++-..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl   76 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVL   76 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TT
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhH
Confidence            79999999999999985  78999999999999999999987654 233444444   333333 389999986443

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.96  E-value=5.5e-10  Score=85.83  Aligned_cols=107  Identities=23%  Similarity=0.295  Sum_probs=85.2

Q ss_pred             cccccCCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897            9 GQHILTNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      |+...+.+.+...+..... ......|+|..||-|+.+...+..+..|+++|+||.-+.-|+.|++.+|++++++|++||
T Consensus        72 ~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD  151 (263)
T KOG2730|consen   72 GWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGD  151 (263)
T ss_pred             ceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEech
Confidence            5556676777776665432 124568999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCC------CCcceeecccCcccchHHHHHH
Q 047897           88 ALKTEF------PQFDLVVANIPYGISSPLVAKL  115 (232)
Q Consensus        88 ~~~~~~------~~~D~Vi~n~p~~~~~~~l~~~  115 (232)
                      ++++-.      ..+|+|+..+|++..+-....+
T Consensus       152 ~ld~~~~lq~~K~~~~~vf~sppwggp~y~~~~~  185 (263)
T KOG2730|consen  152 FLDLASKLKADKIKYDCVFLSPPWGGPSYLRADV  185 (263)
T ss_pred             HHHHHHHHhhhhheeeeeecCCCCCCcchhhhhh
Confidence            988632      1467899889887765444333

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.95  E-value=7.7e-09  Score=82.09  Aligned_cols=101  Identities=24%  Similarity=0.358  Sum_probs=86.3

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +..|+..+++.+|.+|+|-|+|+|.++.++++   +-.+++.+|++....+.|++.++..|+++++++.+-|+....+. 
T Consensus        94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~  173 (314)
T KOG2915|consen   94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI  173 (314)
T ss_pred             HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence            45677888999999999999999999999998   34899999999999999999999999999999999999876543 


Q ss_pred             ---CcceeecccCcccc-hHHHHHHhcCC
Q 047897           95 ---QFDLVVANIPYGIS-SPLVAKLVYGT  119 (232)
Q Consensus        95 ---~~D~Vi~n~p~~~~-~~~l~~~~~~~  119 (232)
                         .+|.|+.++|-.|. -|.+.+++...
T Consensus       174 ks~~aDaVFLDlPaPw~AiPha~~~lk~~  202 (314)
T KOG2915|consen  174 KSLKADAVFLDLPAPWEAIPHAAKILKDE  202 (314)
T ss_pred             cccccceEEEcCCChhhhhhhhHHHhhhc
Confidence               68999999998776 34555555443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.95  E-value=4.8e-09  Score=83.29  Aligned_cols=89  Identities=21%  Similarity=0.202  Sum_probs=70.5

Q ss_pred             CCHHHHHHHHHhcCC----CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           14 TNQRVLDSIVRKSSI----NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~----~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      .++..++.+.+.+..    ..+.+|||+|||+|.++..+++.+.+++++|.++.+++.+++++...+. .++.+..+|+.
T Consensus        25 ~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~  103 (224)
T TIGR01983        25 MNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVE  103 (224)
T ss_pred             hhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHH
Confidence            355556666665542    3477999999999999999988778899999999999999999887654 26889999987


Q ss_pred             CCCC---CCcceeeccc
Q 047897           90 KTEF---PQFDLVVANI  103 (232)
Q Consensus        90 ~~~~---~~~D~Vi~n~  103 (232)
                      +.+.   ..||+|+++-
T Consensus       104 ~~~~~~~~~~D~i~~~~  120 (224)
T TIGR01983       104 DLAEKGAKSFDVVTCME  120 (224)
T ss_pred             HhhcCCCCCccEEEehh
Confidence            7643   3799998753

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.93  E-value=8.1e-09  Score=82.56  Aligned_cols=86  Identities=23%  Similarity=0.289  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---   92 (232)
                      +.-++.+...+...++.+|||||||+|.++..+++.+.+++++|+++.+++.+++++...+.  +++++.+|+.+.+   
T Consensus        34 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~  111 (233)
T PRK05134         34 PLRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEH  111 (233)
T ss_pred             HHHHHHHHHhccCCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhc
Confidence            34455566666556788999999999999999988888999999999999999999876654  4788888887764   


Q ss_pred             CCCcceeeccc
Q 047897           93 FPQFDLVVANI  103 (232)
Q Consensus        93 ~~~~D~Vi~n~  103 (232)
                      ...||+|+++.
T Consensus       112 ~~~fD~Ii~~~  122 (233)
T PRK05134        112 PGQFDVVTCME  122 (233)
T ss_pred             CCCccEEEEhh
Confidence            24799998753

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.92  E-value=3.5e-09  Score=89.84  Aligned_cols=91  Identities=21%  Similarity=0.290  Sum_probs=74.5

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~   89 (232)
                      |+-.+...+.+.+.+   .|++||++-|=||.++..++..++ +|++||+|...++.|++|++.+|++ .+..++++|+.
T Consensus       202 FlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf  278 (393)
T COG1092         202 FLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF  278 (393)
T ss_pred             eHHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHH
Confidence            444344444444444   389999999999999999999776 9999999999999999999999985 56899999998


Q ss_pred             CCC------CCCcceeecccCc
Q 047897           90 KTE------FPQFDLVVANIPY  105 (232)
Q Consensus        90 ~~~------~~~~D~Vi~n~p~  105 (232)
                      ++-      -.+||+||.+||-
T Consensus       279 ~~l~~~~~~g~~fDlIilDPPs  300 (393)
T COG1092         279 KWLRKAERRGEKFDLIILDPPS  300 (393)
T ss_pred             HHHHHHHhcCCcccEEEECCcc
Confidence            862      1389999999993

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.92  E-value=6.8e-09  Score=81.27  Aligned_cols=88  Identities=26%  Similarity=0.336  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--c-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE-cCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--V-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS-KDALKT   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~D~~~~   91 (232)
                      +...+.+.-.+...+..+|||||++.|+-+..++.  + ..+++++|+++++++.|++++...|+.++++++. +|+++.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            55555565666667788999999999999999998  3 5799999999999999999999999988899999 588764


Q ss_pred             ----CCCCcceeeccc
Q 047897           92 ----EFPQFDLVVANI  103 (232)
Q Consensus        92 ----~~~~~D~Vi~n~  103 (232)
                          ..++||+|+.+-
T Consensus       125 l~~~~~~~fDliFIDa  140 (219)
T COG4122         125 LSRLLDGSFDLVFIDA  140 (219)
T ss_pred             HHhccCCCccEEEEeC
Confidence                235899999863

>PRK00811 spermidine synthase; Provisional

Probab=98.92  E-value=4.5e-09  Score=86.46  Aligned_cols=76  Identities=26%  Similarity=0.425  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C--CccEEEEEcCCCCCC---CCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F--HDRLNVISKDALKTE---FPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~--~~~~~~~~~D~~~~~---~~~~D~V   99 (232)
                      ....+||+||||.|.++..+++.  ..+|+++|+|+.+++.|++.+...+  .  +++++++.+|+.++-   ..+||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            35678999999999999999884  4689999999999999999986432  1  368999999997642   3479999


Q ss_pred             ecccC
Q 047897          100 VANIP  104 (232)
Q Consensus       100 i~n~p  104 (232)
                      +++.+
T Consensus       155 i~D~~  159 (283)
T PRK00811        155 IVDST  159 (283)
T ss_pred             EECCC
Confidence            99863

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.91  E-value=2.8e-09  Score=87.66  Aligned_cols=74  Identities=28%  Similarity=0.498  Sum_probs=63.6

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVAN  102 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n  102 (232)
                      +-.+.+|||+|||+|.++...++. ..+|+|||-+. +++.|++.+..++++..++++.|.+++..+  +..|+|++-
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSE  134 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSE  134 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeeh
Confidence            446889999999999999999984 57999999766 559999999999998789999999988644  488999973

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=98.88  E-value=3.8e-08  Score=86.71  Aligned_cols=179  Identities=17%  Similarity=0.293  Sum_probs=119.0

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---c---CCeEEEEEcCHHHHHHHHHHHhhcCCC
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---V---SKKVHAIEIDERMVEILNRRAADSGFH   78 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~---~~~v~~vD~~~~~~~~a~~~~~~~~~~   78 (232)
                      .|..|| |++++.+++-|++.+.+.+..+|+|..||+|++.....+   .   ...++|.|+++.....|+.++-.+|.+
T Consensus       162 ~k~~GE-fyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~  240 (489)
T COG0286         162 GKEAGE-FYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIE  240 (489)
T ss_pred             CCCCCc-cCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCC
Confidence            355677 778899999999999987888999999999997777666   1   256899999999999999999998875


Q ss_pred             ccEEEEEcCCCCCCC-------CCcceeecccCcccc---hHHHH-----HHhc-CCCCccceE-ehhHHHHHHHHhcCC
Q 047897           79 DRLNVISKDALKTEF-------PQFDLVVANIPYGIS---SPLVA-----KLVY-GTKSFRSAT-LLLQKEFARRLLASP  141 (232)
Q Consensus        79 ~~~~~~~~D~~~~~~-------~~~D~Vi~n~p~~~~---~~~l~-----~~~~-~~~~~~~~~-~~~q~e~~~rl~~~~  141 (232)
                      .++...++|.+.-|.       ..||.|++||||+..   ...+.     +... ......... +.+...+...+  .|
T Consensus       241 ~~~~i~~~dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l--~~  318 (489)
T COG0286         241 GDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL--KP  318 (489)
T ss_pred             ccccccccccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc--CC
Confidence            456788888776542       258999999999832   21110     0001 111111122 44445555554  22


Q ss_pred             CC---------Cccc-c-hhh----eeeeeeeeEEEEEecCCCcccCCCccEEEEEEEeCCC
Q 047897          142 GD---------SEFN-R-LAV----NVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE  188 (232)
Q Consensus       142 g~---------~~~~-~-~~~----~~~~~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~  188 (232)
                      |+         ..+. . ...    +++ -..+..+...|...|.+. .+.+.++.+.+.+.
T Consensus       319 ~g~aaivl~~gvlfr~~~e~~IR~~l~~-~~~~~~ii~lp~~lF~~t-~i~~~Il~l~k~k~  378 (489)
T COG0286         319 GGRAAIVLPDGVLFRGGAEKDIRKDLLE-DNLLEAIIGLPTGLFYNT-GIPTNILFLTKNKP  378 (489)
T ss_pred             CceEEEEecCCcCcCCCchHHHHHHHHh-ccceEEeeeCChhhcccC-CCCeEEEEeecCCC
Confidence            21         1111 0 000    112 223566778999999999 88888888776543

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.88  E-value=1.5e-08  Score=82.71  Aligned_cols=82  Identities=28%  Similarity=0.452  Sum_probs=69.1

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL   98 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~   98 (232)
                      .+++....-.+..|||+|||+|.++...+. ..++|+++|- .+|.+.|++..+.+.+.+++.++.|-+++..++ +.|+
T Consensus       168 Ail~N~sDF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~Dv  246 (517)
T KOG1500|consen  168 AILENHSDFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDV  246 (517)
T ss_pred             HHHhcccccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccE
Confidence            444443334678999999999999999888 4589999996 569999999999888889999999999999887 7899


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      +|+-+
T Consensus       247 iISEP  251 (517)
T KOG1500|consen  247 IISEP  251 (517)
T ss_pred             EEecc
Confidence            99864

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.87  E-value=1.1e-08  Score=69.99  Aligned_cols=74  Identities=28%  Similarity=0.435  Sum_probs=61.3

Q ss_pred             EEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCccc
Q 047897           33 TVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPYGI  107 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~~~  107 (232)
                      +++|+|||.|.++..++. ...+++++|+++..+..+++.....+. .++.++.+|+.+...   +++|+|+++.+++.
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLA-DNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccc-cceEEEEcChhhhccccCCceEEEEEccceee
Confidence            489999999999999998 678999999999999999864443332 579999999988753   47999999988665

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.85  E-value=6.6e-08  Score=78.62  Aligned_cols=90  Identities=19%  Similarity=0.207  Sum_probs=60.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-CCCccee
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-FPQFDLV   99 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~D~V   99 (232)
                      +...+..-.|.+|||||||.|+.+..++..+ ..|+|+|.++......+-.-.-.|....+.....-+++++ ...||.|
T Consensus       107 l~p~l~~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtV  186 (315)
T PF08003_consen  107 LLPHLPDLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTV  186 (315)
T ss_pred             HHhhhCCcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEE
Confidence            4444434478899999999999999999855 5799999998876654333333332223434433444544 3489999


Q ss_pred             ec-ccCcccchHH
Q 047897          100 VA-NIPYGISSPL  111 (232)
Q Consensus       100 i~-n~p~~~~~~~  111 (232)
                      ++ .+-||..+|+
T Consensus       187 F~MGVLYHrr~Pl  199 (315)
T PF08003_consen  187 FSMGVLYHRRSPL  199 (315)
T ss_pred             EEeeehhccCCHH
Confidence            97 5677777665

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.84  E-value=1.8e-09  Score=83.86  Aligned_cols=81  Identities=20%  Similarity=0.317  Sum_probs=68.2

Q ss_pred             HhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCC-CccEEEEEcCCCC----CCCCCcc
Q 047897           24 RKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF-HDRLNVISKDALK----TEFPQFD   97 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~~----~~~~~~D   97 (232)
                      +...++.|.+|||.+.|.|+.+...+++++ +|+.+|.|+..++.|.-|.=..++ +.+++++.||+.+    ++.++||
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfD  207 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFD  207 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccc
Confidence            455667899999999999999999999887 999999999999998877644443 2468999999876    4556899


Q ss_pred             eeecccC
Q 047897           98 LVVANIP  104 (232)
Q Consensus        98 ~Vi~n~p  104 (232)
                      +|+.++|
T Consensus       208 aIiHDPP  214 (287)
T COG2521         208 AIIHDPP  214 (287)
T ss_pred             eEeeCCC
Confidence            9999999

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.83  E-value=2.9e-08  Score=86.31  Aligned_cols=72  Identities=33%  Similarity=0.606  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCccHhHHHHHhc------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEV------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN  102 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n  102 (232)
                      +..|+|+|||+|.++...++.      ..+|+|||.++.++..++++....+++++++++++|+.++..+ +.|+||+-
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSE  265 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSE  265 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE-
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEe
Confidence            568999999999998877663      3699999999999988888877778878999999999999876 89999984

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR03438 probable methyltransferase

Probab=98.83  E-value=2.4e-08  Score=82.94  Aligned_cols=71  Identities=18%  Similarity=0.202  Sum_probs=55.4

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .+.|++.+  .++.+|||+|||+|..|..+++.   +.+|+|+|+|++|++.+++++......-++.++++|+.+.
T Consensus        54 ~~~ia~~~--~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438        54 ADEIAAAT--GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQP  127 (301)
T ss_pred             HHHHHHhh--CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccch
Confidence            33444444  35678999999999999999984   5899999999999999999986533113577899999763

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=98.82  E-value=2.6e-08  Score=81.09  Aligned_cols=92  Identities=18%  Similarity=0.296  Sum_probs=63.5

Q ss_pred             cccCCHHHHHHHHHh--------cCCCCCCEEEEEcCCccH----hHHHHHhc-------CCeEEEEEcCHHHHHHHHHH
Q 047897           11 HILTNQRVLDSIVRK--------SSINPDDTVLEIGPGTGN----LTLKLLEV-------SKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~--------~~~~~~~~vLDiG~G~G~----~t~~l~~~-------~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .|..++...+.+.+.        ....++.+|+|+|||+|.    ++..+++.       ..+|+|+|+|+.+++.|++.
T Consensus        72 ~FfR~~~~~~~l~~~vlp~l~~~~~~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~  151 (264)
T smart00138       72 RFFRESKHFEALEEKVLPLLIASRRHGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG  151 (264)
T ss_pred             cccCCcHHHHHHHHHHhHHHHHhcCCCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence            466666555554432        222345699999999996    45555441       36899999999999999986


Q ss_pred             Hhh----cC----------------------CCccEEEEEcCCCCCCC--CCcceeecc
Q 047897           72 AAD----SG----------------------FHDRLNVISKDALKTEF--PQFDLVVAN  102 (232)
Q Consensus        72 ~~~----~~----------------------~~~~~~~~~~D~~~~~~--~~~D~Vi~n  102 (232)
                      ...    .+                      +..++.|.++|+.+.+.  ++||+|+|.
T Consensus       152 ~y~~~~~~~~~~~~~~~yf~~~~~~~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~cr  210 (264)
T smart00138      152 IYPERELEDLPKALLARYFSRVEDKYRVKPELKERVRFAKHNLLAESPPLGDFDLIFCR  210 (264)
T ss_pred             CCCHHHHhcCCHHHHhhhEEeCCCeEEEChHHhCcCEEeeccCCCCCCccCCCCEEEec
Confidence            411    00                      11368999999998764  489999984

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02366 spermidine synthase

Probab=98.82  E-value=2.8e-08  Score=82.38  Aligned_cols=77  Identities=19%  Similarity=0.358  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC----CCCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT----EFPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~----~~~~~D~V   99 (232)
                      ....+||+||||.|.++..+++.  ..+|+.+|+|+.+++.+++.+...  ++ +++++++.+|+..+    +.+.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            45679999999999999999984  468999999999999999998643  22 36899999998654    23479999


Q ss_pred             ecccCc
Q 047897          100 VANIPY  105 (232)
Q Consensus       100 i~n~p~  105 (232)
                      +++.+.
T Consensus       170 i~D~~d  175 (308)
T PLN02366        170 IVDSSD  175 (308)
T ss_pred             EEcCCC
Confidence            998653

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=2.7e-08  Score=84.30  Aligned_cols=134  Identities=20%  Similarity=0.202  Sum_probs=96.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc----CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV----SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      .........+++.+|++|||.++++|+-|..+++.    +..|+|+|+|+.-+..+++++.+.|+ .++.+++.|+...+
T Consensus       143 ~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~-~nv~~~~~d~~~~~  221 (355)
T COG0144         143 EASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGV-RNVIVVNKDARRLA  221 (355)
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCC-CceEEEeccccccc
Confidence            33444456788899999999999999999999882    35679999999999999999999998 46889999987553


Q ss_pred             C----C-CcceeecccCcccchH-----HHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhhee
Q 047897           93 F----P-QFDLVVANIPYGISSP-----LVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAVNV  153 (232)
Q Consensus        93 ~----~-~~D~Vi~n~p~~~~~~-----~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~~~  153 (232)
                      .    . .||.|+.+.|...+.-     .+.+.....  -......+|.++   +-+++.++|...|+++|+..
T Consensus       222 ~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~--~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~  293 (355)
T COG0144         222 ELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWRRTPE--DIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTP  293 (355)
T ss_pred             ccccccCcCcEEEECCCCCCCcccccCccccccCCHH--HHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCch
Confidence            2    2 4999999999876531     111111000  001122467766   44567778889999888743

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.80  E-value=1.6e-08  Score=81.17  Aligned_cols=89  Identities=18%  Similarity=0.165  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ..+...+.+...+...+..+|||||+++|+-|..++.   ...+|+++|.+++..+.|++++...|+.++++++.||+.+
T Consensus        63 ~~~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e  142 (247)
T PLN02589         63 TSADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALP  142 (247)
T ss_pred             cCHHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHH
Confidence            3455555444444444567999999999999999887   3579999999999999999999999988899999999987


Q ss_pred             CC---------CCCcceeecc
Q 047897           91 TE---------FPQFDLVVAN  102 (232)
Q Consensus        91 ~~---------~~~~D~Vi~n  102 (232)
                      .-         .++||+|+.+
T Consensus       143 ~L~~l~~~~~~~~~fD~iFiD  163 (247)
T PLN02589        143 VLDQMIEDGKYHGTFDFIFVD  163 (247)
T ss_pred             HHHHHHhccccCCcccEEEec
Confidence            41         1479999976

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=98.80  E-value=2.6e-08  Score=74.62  Aligned_cols=78  Identities=24%  Similarity=0.335  Sum_probs=53.4

Q ss_pred             HHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           18 VLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        18 ~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      +.+.+.+..+ ..++.+|||+|||.|.++..+.+.+.+++|+|+++.+++.      . .  .............+...|
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~-~--~~~~~~~~~~~~~~~~~f   79 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R-N--VVFDNFDAQDPPFPDGSF   79 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T-T--SEEEEEECHTHHCHSSSE
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h-h--hhhhhhhhhhhhccccch
Confidence            3344443443 4678899999999999999998888899999999999987      1 0  112222222222334589


Q ss_pred             ceeecccC
Q 047897           97 DLVVANIP  104 (232)
Q Consensus        97 D~Vi~n~p  104 (232)
                      |+|+++-.
T Consensus        80 D~i~~~~~   87 (161)
T PF13489_consen   80 DLIICNDV   87 (161)
T ss_dssp             EEEEEESS
T ss_pred             hhHhhHHH
Confidence            99998644

...

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.80  E-value=1.3e-08  Score=79.60  Aligned_cols=72  Identities=19%  Similarity=0.285  Sum_probs=53.5

Q ss_pred             EEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--CCCcceeecccC
Q 047897           33 TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--FPQFDLVVANIP  104 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~D~Vi~n~p  104 (232)
                      .++|+|||+|..++.++....+|+|+|+++.|++.+++................+..++.  .++.|+|++--.
T Consensus        36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa  109 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQA  109 (261)
T ss_pred             eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhh
Confidence            799999999988888888889999999999999999887754332222344444555544  348999997543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.80  E-value=6.5e-08  Score=76.49  Aligned_cols=86  Identities=21%  Similarity=0.185  Sum_probs=64.8

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-----------CCCccEEE
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-----------GFHDRLNV   83 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-----------~~~~~~~~   83 (232)
                      ++.+.+.+.+ +.+.++.+||.+|||.|..+..|++.+.+|+|+|+|+..++.+.+.....           .-..++++
T Consensus        29 np~L~~~~~~-l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  107 (226)
T PRK13256         29 NEFLVKHFSK-LNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEI  107 (226)
T ss_pred             CHHHHHHHHh-cCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEE
Confidence            4555566543 44456789999999999999999999999999999999999876532100           00147999


Q ss_pred             EEcCCCCCCC-----CCcceeec
Q 047897           84 ISKDALKTEF-----PQFDLVVA  101 (232)
Q Consensus        84 ~~~D~~~~~~-----~~~D~Vi~  101 (232)
                      +++|+++++.     ..||.|+=
T Consensus       108 ~~gD~f~l~~~~~~~~~fD~VyD  130 (226)
T PRK13256        108 YVADIFNLPKIANNLPVFDIWYD  130 (226)
T ss_pred             EEccCcCCCccccccCCcCeeee
Confidence            9999999863     36887663

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.79  E-value=3e-08  Score=76.71  Aligned_cols=67  Identities=24%  Similarity=0.389  Sum_probs=52.3

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---------
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---------   92 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---------   92 (232)
                      ...+.++++|||+|||+|.++..+++.   ..+|+|+|+++.+           .. .+++++++|+.+.+         
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~   94 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERV   94 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHh
Confidence            345578999999999999999988873   3579999999864           11 45889999987642         


Q ss_pred             -CCCcceeeccc
Q 047897           93 -FPQFDLVVANI  103 (232)
Q Consensus        93 -~~~~D~Vi~n~  103 (232)
                       ...+|+|+++.
T Consensus        95 ~~~~~D~V~~~~  106 (188)
T TIGR00438        95 GDDKVDVVMSDA  106 (188)
T ss_pred             CCCCccEEEcCC
Confidence             23699999875

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.79  E-value=3e-08  Score=82.51  Aligned_cols=80  Identities=23%  Similarity=0.319  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCe-EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecccCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIPY  105 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~p~  105 (232)
                      .+|.+|+|.-+|-|.+|..++..+.. |+|+|++|.+++.+++|+..+++.+.+..++||+.+...  ..+|.|+.|+|.
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p~  266 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK  266 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCCC
Confidence            46999999999999999999996655 999999999999999999999997779999999998754  379999999986


Q ss_pred             ccc
Q 047897          106 GIS  108 (232)
Q Consensus       106 ~~~  108 (232)
                      ...
T Consensus       267 ~a~  269 (341)
T COG2520         267 SAH  269 (341)
T ss_pred             cch
Confidence            433

>PRK10742 putative methyltransferase; Provisional

Probab=98.78  E-value=2.9e-08  Score=78.85  Aligned_cols=89  Identities=20%  Similarity=0.337  Sum_probs=74.9

Q ss_pred             HHHHHhcCCCCCC--EEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc------C--CCccEEEEEcCCC
Q 047897           20 DSIVRKSSINPDD--TVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS------G--FHDRLNVISKDAL   89 (232)
Q Consensus        20 ~~i~~~~~~~~~~--~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------~--~~~~~~~~~~D~~   89 (232)
                      +.+++.++++++.  +|||.-+|+|..+..++..+++|+++|.++.+....++++...      +  ...+++++++|+.
T Consensus        76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~  155 (250)
T PRK10742         76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (250)
T ss_pred             cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHH
Confidence            4556777778887  8999999999999999999999999999999999999999874      2  1257999999998


Q ss_pred             CCC---CCCcceeecccCcccc
Q 047897           90 KTE---FPQFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~~---~~~~D~Vi~n~p~~~~  108 (232)
                      ++-   ..+||+|+.+|||...
T Consensus       156 ~~L~~~~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        156 TALTDITPRPQVVYLDPMFPHK  177 (250)
T ss_pred             HHHhhCCCCCcEEEECCCCCCC
Confidence            763   2379999999999764

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.77  E-value=2.7e-08  Score=81.28  Aligned_cols=91  Identities=29%  Similarity=0.345  Sum_probs=66.6

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~   89 (232)
                      |+- ..-.+..+...  ..+.+|||+-|=+|+++...+..+ .+|++||.|..+++.+++|+..++++ ++++++.+|+.
T Consensus       108 FlD-qR~nR~~v~~~--~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf  184 (286)
T PF10672_consen  108 FLD-QRENRKWVRKY--AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVF  184 (286)
T ss_dssp             -GG-GHHHHHHHHHH--CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HH
T ss_pred             cHH-HHhhHHHHHHH--cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            444 44444444443  257899999999999999988865 58999999999999999999999875 68999999998


Q ss_pred             CCC-----CCCcceeecccCc
Q 047897           90 KTE-----FPQFDLVVANIPY  105 (232)
Q Consensus        90 ~~~-----~~~~D~Vi~n~p~  105 (232)
                      ++-     ...||+||.+||-
T Consensus       185 ~~l~~~~~~~~fD~IIlDPPs  205 (286)
T PF10672_consen  185 KFLKRLKKGGRFDLIILDPPS  205 (286)
T ss_dssp             HHHHHHHHTT-EEEEEE--SS
T ss_pred             HHHHHHhcCCCCCEEEECCCC
Confidence            742     2389999999993

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.77  E-value=5.9e-08  Score=79.40  Aligned_cols=82  Identities=18%  Similarity=0.247  Sum_probs=49.3

Q ss_pred             CCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCC----CCC---CCCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDA----LKT---EFPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~----~~~---~~~~~D~Vi  100 (232)
                      .-++||||+|...+=-.|..  .+++++|.|+|+..++.|+++...+ ++.++++++...-    ++.   +.+.||..+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm  182 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM  182 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence            34799999999865333322  6899999999999999999999998 8888999986632    221   113699999


Q ss_pred             cccCcccchHHH
Q 047897          101 ANIPYGISSPLV  112 (232)
Q Consensus       101 ~n~p~~~~~~~l  112 (232)
                      |||||+.+.+..
T Consensus       183 CNPPFy~s~~e~  194 (299)
T PF05971_consen  183 CNPPFYSSQEEA  194 (299)
T ss_dssp             E-----SS----
T ss_pred             cCCccccChhhh
Confidence            999999886654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.77  E-value=7.5e-08  Score=76.37  Aligned_cols=49  Identities=22%  Similarity=0.350  Sum_probs=39.2

Q ss_pred             HHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHH
Q 047897           19 LDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEI   67 (232)
Q Consensus        19 ~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~   67 (232)
                      +..+++..++ .++.+|||+|||+|.+|..+++. ..+|+|+|+++.++..
T Consensus        63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            3445555554 36778999999999999999996 5789999999977764

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.76  E-value=4.6e-08  Score=76.02  Aligned_cols=76  Identities=25%  Similarity=0.344  Sum_probs=60.2

Q ss_pred             CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----CCCCcceeecccC
Q 047897           32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----EFPQFDLVVANIP  104 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~D~Vi~n~p  104 (232)
                      ..+||||||.|.++..++.  +...++|+|+....+..+.+++...++ .|+.++++|+...     +..++|.|..|.|
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP   97 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP   97 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence            3899999999999999988  678999999999999999999998888 6999999999873     2347899999887


Q ss_pred             cccc
Q 047897          105 YGIS  108 (232)
Q Consensus       105 ~~~~  108 (232)
                      -.|.
T Consensus        98 DPWp  101 (195)
T PF02390_consen   98 DPWP  101 (195)
T ss_dssp             ----
T ss_pred             CCCc
Confidence            5544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.73  E-value=8.2e-08  Score=79.00  Aligned_cols=92  Identities=18%  Similarity=0.326  Sum_probs=79.2

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      ||.+-|-+++.+++.+.+.+++.++|.-+|.|+.|..+++.  ..+|+|+|.|+.+++.+++++..++  +++.++++++
T Consensus         1 ~~~H~pVll~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~--~R~~~i~~nF   78 (305)
T TIGR00006         1 NFFHQSVLLDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE--GRVVLIHDNF   78 (305)
T ss_pred             CCCCcchhHHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC--CcEEEEeCCH
Confidence            56778999999999999999999999999999999999983  4899999999999999999987653  6899999998


Q ss_pred             CCCC-------CCCcceeecccC
Q 047897           89 LKTE-------FPQFDLVVANIP  104 (232)
Q Consensus        89 ~~~~-------~~~~D~Vi~n~p  104 (232)
                      .++.       ..++|.|+.|+-
T Consensus        79 ~~l~~~l~~~~~~~vDgIl~DLG  101 (305)
T TIGR00006        79 ANFFEHLDELLVTKIDGILVDLG  101 (305)
T ss_pred             HHHHHHHHhcCCCcccEEEEecc
Confidence            7752       235888888763

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.73  E-value=8.3e-08  Score=75.97  Aligned_cols=77  Identities=25%  Similarity=0.337  Sum_probs=66.7

Q ss_pred             CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCC-CcceeecccC
Q 047897           32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFP-QFDLVVANIP  104 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~-~~D~Vi~n~p  104 (232)
                      ..+||||||.|.++..+|.  +...++|||+....+..|-+.+...++. |+.++++|+..+    ..+ +.|.|..|.|
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP  128 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP  128 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence            4899999999999999998  5689999999999999999999999983 899999999874    223 7899999988


Q ss_pred             cccch
Q 047897          105 YGISS  109 (232)
Q Consensus       105 ~~~~~  109 (232)
                      -.|..
T Consensus       129 DPWpK  133 (227)
T COG0220         129 DPWPK  133 (227)
T ss_pred             CCCCC
Confidence            76663

>PRK03612 spermidine synthase; Provisional

Probab=98.73  E-value=1.9e-08  Score=89.48  Aligned_cols=79  Identities=22%  Similarity=0.394  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc-C-CeEEEEEcCHHHHHHHHHHH--hhc---CC-CccEEEEEcCCCCCC---CCCcc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV-S-KKVHAIEIDERMVEILNRRA--ADS---GF-HDRLNVISKDALKTE---FPQFD   97 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~-~-~~v~~vD~~~~~~~~a~~~~--~~~---~~-~~~~~~~~~D~~~~~---~~~~D   97 (232)
                      .+..+|||||||+|..+..+++. . .+|+++|+|+++++.++++.  ...   .+ +++++++.+|+.++-   .++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            45678999999999999999884 3 79999999999999999943  211   11 268999999998742   24899


Q ss_pred             eeecccCccc
Q 047897           98 LVVANIPYGI  107 (232)
Q Consensus        98 ~Vi~n~p~~~  107 (232)
                      +|++|+|...
T Consensus       376 vIi~D~~~~~  385 (521)
T PRK03612        376 VIIVDLPDPS  385 (521)
T ss_pred             EEEEeCCCCC
Confidence            9999987643

>PRK01581 speE spermidine synthase; Validated

Probab=98.71  E-value=3.1e-08  Score=82.98  Aligned_cols=78  Identities=23%  Similarity=0.357  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHh-----hcCC-CccEEEEEcCCCCCC---CCCcc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAA-----DSGF-HDRLNVISKDALKTE---FPQFD   97 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~-----~~~~-~~~~~~~~~D~~~~~---~~~~D   97 (232)
                      ....+||+||||.|..+..+++.  ..+|++||+|+++++.|++...     ...+ +++++++.+|+.++-   .+.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            34569999999999999999884  4799999999999999997321     1111 369999999998752   23799


Q ss_pred             eeecccCcc
Q 047897           98 LVVANIPYG  106 (232)
Q Consensus        98 ~Vi~n~p~~  106 (232)
                      +|++++|..
T Consensus       229 VIIvDl~DP  237 (374)
T PRK01581        229 VIIIDFPDP  237 (374)
T ss_pred             EEEEcCCCc
Confidence            999998654

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.71  E-value=7e-08  Score=76.23  Aligned_cols=85  Identities=21%  Similarity=0.307  Sum_probs=63.0

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh-c------C----CCccEEE
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD-S------G----FHDRLNV   83 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~------~----~~~~~~~   83 (232)
                      +|.+.+. ++.+...++.+||..|||.|.....|++.+.+|+|+|+++.+++.+.+.... .      +    -.+++++
T Consensus        23 ~p~L~~~-~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~  101 (218)
T PF05724_consen   23 NPALVEY-LDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITI  101 (218)
T ss_dssp             THHHHHH-HHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEE
T ss_pred             CHHHHHH-HHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEE
Confidence            3444444 4446667788999999999999999999999999999999999998443321 0      0    0246899


Q ss_pred             EEcCCCCCCCC---Ccceee
Q 047897           84 ISKDALKTEFP---QFDLVV  100 (232)
Q Consensus        84 ~~~D~~~~~~~---~~D~Vi  100 (232)
                      .++|+++++..   +||.|.
T Consensus       102 ~~gDfF~l~~~~~g~fD~iy  121 (218)
T PF05724_consen  102 YCGDFFELPPEDVGKFDLIY  121 (218)
T ss_dssp             EES-TTTGGGSCHHSEEEEE
T ss_pred             EEcccccCChhhcCCceEEE
Confidence            99999998654   588877

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.70  E-value=3e-08  Score=75.83  Aligned_cols=73  Identities=25%  Similarity=0.275  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEE-EEEcCCCCCC---CCCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLN-VISKDALKTE---FPQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~-~~~~D~~~~~---~~~~D~Vi~n~  103 (232)
                      ....|||+|||+|..-...-. +..+|+++|.++.|-+++.+.+..... .++. |+.+|.++++   ..++|.|++.+
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~-~~~~~fvva~ge~l~~l~d~s~DtVV~Tl  153 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKP-LQVERFVVADGENLPQLADGSYDTVVCTL  153 (252)
T ss_pred             CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccC-cceEEEEeechhcCcccccCCeeeEEEEE
Confidence            344689999999997766553 789999999999999999999987643 5677 9999999987   23899998864

>TIGR00417 speE spermidine synthase

Probab=98.68  E-value=9.2e-08  Score=78.24  Aligned_cols=78  Identities=22%  Similarity=0.393  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C-CccEEEEEcCCCCC---CCCCcceee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F-HDRLNVISKDALKT---EFPQFDLVV  100 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~D~~~~---~~~~~D~Vi  100 (232)
                      ..+.+||+||||+|.++..+++.  ..+++++|+|+++++.+++.+...+  + .++++++.+|+.++   ...+||+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            34569999999999999998874  4789999999999999999875432  1 25789999998663   124899999


Q ss_pred             cccCcc
Q 047897          101 ANIPYG  106 (232)
Q Consensus       101 ~n~p~~  106 (232)
                      ++.+..
T Consensus       151 ~D~~~~  156 (270)
T TIGR00417       151 VDSTDP  156 (270)
T ss_pred             EeCCCC
Confidence            987643

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.68  E-value=1.2e-07  Score=73.96  Aligned_cols=89  Identities=24%  Similarity=0.413  Sum_probs=60.8

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHh-------hcCC-CccEEE
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAA-------DSGF-HDRLNV   83 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~   83 (232)
                      +.+..+..+++.+++.+++..+|+|||.|......+-  ...+.+|||+.+...+.|+....       ..|. ..++++
T Consensus        26 i~~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l  105 (205)
T PF08123_consen   26 ISPEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL  105 (205)
T ss_dssp             CHHHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred             cCHHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence            4578888999999999999999999999998776655  45669999999999887765443       2232 257899


Q ss_pred             EEcCCCCCCC-----CCcceeecc
Q 047897           84 ISKDALKTEF-----PQFDLVVAN  102 (232)
Q Consensus        84 ~~~D~~~~~~-----~~~D~Vi~n  102 (232)
                      .++|+++.+.     .+.|+|++|
T Consensus       106 ~~gdfl~~~~~~~~~s~AdvVf~N  129 (205)
T PF08123_consen  106 IHGDFLDPDFVKDIWSDADVVFVN  129 (205)
T ss_dssp             ECS-TTTHHHHHHHGHC-SEEEE-
T ss_pred             eccCccccHhHhhhhcCCCEEEEe
Confidence            9999987653     356888886

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.64  E-value=2.1e-08  Score=77.78  Aligned_cols=80  Identities=23%  Similarity=0.396  Sum_probs=64.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----   91 (232)
                      |..+++++..++..+-.++||+|||||..+..+-....+++|+|+|.+|++.|.++-.-      =.+.++|+..+    
T Consensus       111 P~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~Y------D~L~~Aea~~Fl~~~  184 (287)
T COG4976         111 PELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLY------DTLYVAEAVLFLEDL  184 (287)
T ss_pred             HHHHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccch------HHHHHHHHHHHhhhc
Confidence            78889999999887788999999999999999988899999999999999998876421      12344444332    


Q ss_pred             CCCCcceeec
Q 047897           92 EFPQFDLVVA  101 (232)
Q Consensus        92 ~~~~~D~Vi~  101 (232)
                      ..+.||+|++
T Consensus       185 ~~er~DLi~A  194 (287)
T COG4976         185 TQERFDLIVA  194 (287)
T ss_pred             cCCcccchhh
Confidence            3347999886

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.58  E-value=5.7e-07  Score=66.28  Aligned_cols=84  Identities=27%  Similarity=0.341  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcC--CCccEEEEEcCCCCCC-CCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSG--FHDRLNVISKDALKTE-FPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~-~~~~D~V   99 (232)
                      .+...|+|+|||.|+++..++.      ...+|+|+|.++..++.+.++....+  ...++.+..++..+.. ....+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            5677999999999999999988      47899999999999999999998776  4356777777766553 2355677


Q ss_pred             ecccCcccchHHH
Q 047897          100 VANIPYGISSPLV  112 (232)
Q Consensus       100 i~n~p~~~~~~~l  112 (232)
                      ++--..+.-++.+
T Consensus       104 vgLHaCG~Ls~~~  116 (141)
T PF13679_consen  104 VGLHACGDLSDRA  116 (141)
T ss_pred             EEeecccchHHHH
Confidence            7643443334433

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.54  E-value=6.7e-07  Score=73.08  Aligned_cols=136  Identities=21%  Similarity=0.265  Sum_probs=90.7

Q ss_pred             CEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C-CccEEEEEcCCCCCC--CC-Ccceeeccc
Q 047897           32 DTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F-HDRLNVISKDALKTE--FP-QFDLVVANI  103 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~D~~~~~--~~-~~D~Vi~n~  103 (232)
                      .+||-||-|.|..++++++.  ..+++.||+|+..++.+++.+....  . ++|++++.+|+.++-  .+ .||+|+.+.
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            59999999999999999994  4899999999999999999997643  2 379999999998863  22 699999875


Q ss_pred             CcccchHHHHHHhcCCCCccceEehhHH---HHHHHHhcCCCCCcccch------hheeeeeeeeEEEEEecCCCcccCC
Q 047897          104 PYGISSPLVAKLVYGTKSFRSATLLLQK---EFARRLLASPGDSEFNRL------AVNVKLVADVEFVMDVSKRDFLPCP  174 (232)
Q Consensus       104 p~~~~~~~l~~~~~~~~~~~~~~~~~q~---e~~~rl~~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~f~P~p  174 (232)
                      .-..               -++.-++..   +.+++.+..+|-.....-      ..........+.++..-.....+.|
T Consensus       158 tdp~---------------gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~~~~~~~~~~~~~~vf~~~~~~~~~ip  222 (282)
T COG0421         158 TDPV---------------GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQDEEIALAYRNVSRVFSIVPPYVAPIP  222 (282)
T ss_pred             CCCC---------------CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhhccccccceeccc
Confidence            3111               111112222   234555555553222111      1112223345566666677778889


Q ss_pred             CccEEEEE
Q 047897          175 KVDSSVVI  182 (232)
Q Consensus       175 ~v~s~~~~  182 (232)
                      .+.++...
T Consensus       223 t~~~g~~~  230 (282)
T COG0421         223 TYPSGFWG  230 (282)
T ss_pred             eecCCceE
Confidence            98888443

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1e-06  Score=67.73  Aligned_cols=89  Identities=19%  Similarity=0.322  Sum_probs=73.7

Q ss_pred             CCHHHHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcC--------C-C
Q 047897           14 TNQRVLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSG--------F-H   78 (232)
Q Consensus        14 ~~~~~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~--------~-~   78 (232)
                      .-|.+-..+++.+.  +++|...||+|+|+|++|..++.    .+..++|||.-+++++.+++++...-        + .
T Consensus        64 SAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~  143 (237)
T KOG1661|consen   64 SAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKR  143 (237)
T ss_pred             cchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhcc
Confidence            34888889999888  88999999999999999999886    34556999999999999999986542        1 2


Q ss_pred             ccEEEEEcCCCCCCCC--Ccceeecc
Q 047897           79 DRLNVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        79 ~~~~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      +++.++.||......+  +||.|.+.
T Consensus       144 ~~l~ivvGDgr~g~~e~a~YDaIhvG  169 (237)
T KOG1661|consen  144 GELSIVVGDGRKGYAEQAPYDAIHVG  169 (237)
T ss_pred             CceEEEeCCccccCCccCCcceEEEc
Confidence            5788999999886543  89999875

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.53  E-value=5.2e-07  Score=68.84  Aligned_cols=78  Identities=27%  Similarity=0.436  Sum_probs=51.1

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--CCccEEEEEcCCCCC------CCCCcc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--FHDRLNVISKDALKT------EFPQFD   97 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~------~~~~~D   97 (232)
                      ...+.+|||+|||+|..+..++..  ..+|+..|.++ .++.++.|++.++  ...++.+...|..+.      ...+||
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence            456789999999999999999886  78999999999 9999999998876  346788888776442      123699


Q ss_pred             eeec-ccCcc
Q 047897           98 LVVA-NIPYG  106 (232)
Q Consensus        98 ~Vi~-n~p~~  106 (232)
                      +|++ ++-|.
T Consensus       122 ~IlasDv~Y~  131 (173)
T PF10294_consen  122 VILASDVLYD  131 (173)
T ss_dssp             EEEEES--S-
T ss_pred             EEEEecccch
Confidence            8886 56554

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.52  E-value=5.2e-07  Score=76.78  Aligned_cols=83  Identities=16%  Similarity=0.300  Sum_probs=69.5

Q ss_pred             CEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCc
Q 047897           32 DTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPY  105 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~  105 (232)
                      -+|||..||+|..+..++..   ..+|+++|+++.+++.+++|++.++. .+++++++|+..+..   ..||+|..|+ |
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~-~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f  123 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSV-ENIEVPNEDAANVLRYRNRKFHVIDIDP-F  123 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence            48999999999999999884   37899999999999999999998876 478999999987632   3699999998 7


Q ss_pred             ccchHHHHHHh
Q 047897          106 GISSPLVAKLV  116 (232)
Q Consensus       106 ~~~~~~l~~~~  116 (232)
                      +...+.+...+
T Consensus       124 Gs~~~fld~al  134 (374)
T TIGR00308       124 GTPAPFVDSAI  134 (374)
T ss_pred             CCcHHHHHHHH
Confidence            76666665444

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PLN02823 spermine synthase

Probab=98.47  E-value=4.2e-07  Score=76.27  Aligned_cols=75  Identities=24%  Similarity=0.401  Sum_probs=62.2

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC---CCccEEEEEcCCCCCC---CCCcceeec
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG---FHDRLNVISKDALKTE---FPQFDLVVA  101 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~---~~~~D~Vi~  101 (232)
                      ...+||.||+|.|..+..+++.  ..+|++||+|+.+++.|++.+...+   .+++++++.+|+..+-   .++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4568999999999999998883  4789999999999999999986432   1378999999998752   247999999


Q ss_pred             ccC
Q 047897          102 NIP  104 (232)
Q Consensus       102 n~p  104 (232)
                      +++
T Consensus       183 D~~  185 (336)
T PLN02823        183 DLA  185 (336)
T ss_pred             cCC
Confidence            864

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.43  E-value=2.6e-06  Score=68.45  Aligned_cols=85  Identities=16%  Similarity=0.325  Sum_probs=63.1

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD   97 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D   97 (232)
                      ..+.+..+..+..+|+|||+|.|.++..+++  +..+++.+|. |+.++.+++       .+|++++.+|+. .+.+.+|
T Consensus        90 ~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~P~~D  160 (241)
T PF00891_consen   90 DILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPLPVAD  160 (241)
T ss_dssp             HHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCCSSES
T ss_pred             hhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhhcccc
Confidence            4455667777788999999999999999998  6789999998 889998888       278999999999 5555699


Q ss_pred             eeec-ccCcccchHHHH
Q 047897           98 LVVA-NIPYGISSPLVA  113 (232)
Q Consensus        98 ~Vi~-n~p~~~~~~~l~  113 (232)
                      +++. ++-.++..+...
T Consensus       161 ~~~l~~vLh~~~d~~~~  177 (241)
T PF00891_consen  161 VYLLRHVLHDWSDEDCV  177 (241)
T ss_dssp             EEEEESSGGGS-HHHHH
T ss_pred             ceeeehhhhhcchHHHH
Confidence            8775 444444444433

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.42  E-value=1.9e-07  Score=76.76  Aligned_cols=128  Identities=21%  Similarity=0.264  Sum_probs=93.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CC-
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FP-   94 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~-   94 (232)
                      ....+.+.+++.|||.++|+|+-|..+++   ....+++.|+++.-+..+++++.+.|. .++.+...|+....   .. 
T Consensus        77 ~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~  155 (283)
T PF01189_consen   77 VALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPES  155 (283)
T ss_dssp             HHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTT
T ss_pred             ccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeecccccccccccc
Confidence            34567788999999999999999999888   357999999999999999999999998 57888888887762   23 


Q ss_pred             CcceeecccCcccc-----hHHHHHHhcCCCCccceEehhHHHHHH---HHh----cCCCCCcccchhhe
Q 047897           95 QFDLVVANIPYGIS-----SPLVAKLVYGTKSFRSATLLLQKEFAR---RLL----ASPGDSEFNRLAVN  152 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~-----~~~l~~~~~~~~~~~~~~~~~q~e~~~---rl~----~~~g~~~~~~~~~~  152 (232)
                      .||.|+.+.|....     .+.+.+... ..... .....|.++.+   +++    .++|...|..+++.
T Consensus       156 ~fd~VlvDaPCSg~G~i~r~p~~~~~~~-~~~~~-~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~  223 (283)
T PF01189_consen  156 KFDRVLVDAPCSGLGTIRRNPDIKWRRS-PEDIE-KLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLS  223 (283)
T ss_dssp             TEEEEEEECSCCCGGGTTTCTTHHHHE--TTHHH-HHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHH
T ss_pred             ccchhhcCCCccchhhhhhccchhhccc-ccccc-hHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHH
Confidence            59999999998765     222322211 11111 12245776644   456    66777888888873

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=98.42  E-value=2.2e-07  Score=76.17  Aligned_cols=96  Identities=23%  Similarity=0.364  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHH-------HHHHHHhhcCCCc-cEEEEE
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE-------ILNRRAADSGFHD-RLNVIS   85 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~-------~a~~~~~~~~~~~-~~~~~~   85 (232)
                      -|+++.=-+.+.+...+|+.|+|.-.|||.+....+.-|+.|+|.|||-.++.       -.+.|++++|..+ -+.+..
T Consensus       192 mDAeLSli~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~  271 (421)
T KOG2671|consen  192 MDAELSLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT  271 (421)
T ss_pred             cchhHHHHHhhhhccCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheee
Confidence            45677666777888899999999999999999999999999999999998876       3567888887532 367889


Q ss_pred             cCCCCCCCC---CcceeecccCcccch
Q 047897           86 KDALKTEFP---QFDLVVANIPYGISS  109 (232)
Q Consensus        86 ~D~~~~~~~---~~D~Vi~n~p~~~~~  109 (232)
                      +|....++.   .||.|+|++||++-.
T Consensus       272 ~D~sn~~~rsn~~fDaIvcDPPYGVRe  298 (421)
T KOG2671|consen  272 ADFSNPPLRSNLKFDAIVCDPPYGVRE  298 (421)
T ss_pred             ecccCcchhhcceeeEEEeCCCcchhh
Confidence            999887764   699999999999764

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.40  E-value=9.5e-07  Score=69.29  Aligned_cols=46  Identities=20%  Similarity=0.342  Sum_probs=40.9

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhh
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      ..+..+|||||-+|.+|..+++  ....|+|+|||+.++..|+++.+-
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~  104 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF  104 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence            3567899999999999999999  457899999999999999999853

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.33  E-value=4.1e-06  Score=66.77  Aligned_cols=87  Identities=24%  Similarity=0.382  Sum_probs=62.7

Q ss_pred             CCcccccCCHHHHHHHHHhcC-----CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            7 SKGQHILTNQRVLDSIVRKSS-----INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         7 ~~gq~fl~~~~~~~~i~~~~~-----~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      .-|.+|.-+..-.++++....     -....++||||+|.|..|..++....+|++.|.|+.|...+++    .|    +
T Consensus        66 gRG~MFvfS~~Q~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~----kg----~  137 (265)
T PF05219_consen   66 GRGSMFVFSEEQFRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK----KG----F  137 (265)
T ss_pred             cCCcEEEecHHHHHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh----CC----C
Confidence            357888888887777776542     1245689999999999999999888899999999999665544    33    4


Q ss_pred             EEEEcCCCCCCCCCcceeec
Q 047897           82 NVISKDALKTEFPQFDLVVA  101 (232)
Q Consensus        82 ~~~~~D~~~~~~~~~D~Vi~  101 (232)
                      +++..|-..-...+||+|.|
T Consensus       138 ~vl~~~~w~~~~~~fDvIsc  157 (265)
T PF05219_consen  138 TVLDIDDWQQTDFKFDVISC  157 (265)
T ss_pred             eEEehhhhhccCCceEEEee
Confidence            44444332212237999987

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.30  E-value=6.2e-06  Score=73.20  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~  103 (232)
                      .+..+||||||.|.++..++.  +...++|+|+....+..+.......++ .|+.++.+|+..+    +..++|.|+.|.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~F  425 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILF  425 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEEC
Confidence            466899999999999999988  568999999999999888888888787 5899999887533    334789999999


Q ss_pred             Ccccch
Q 047897          104 PYGISS  109 (232)
Q Consensus       104 p~~~~~  109 (232)
                      |-.|..
T Consensus       426 PDPWpK  431 (506)
T PRK01544        426 PDPWIK  431 (506)
T ss_pred             CCCCCC
Confidence            876653

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.29  E-value=7.2e-06  Score=63.02  Aligned_cols=69  Identities=28%  Similarity=0.375  Sum_probs=55.4

Q ss_pred             EEEEEcCCccHhH--HHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-CCCCCcceeecc
Q 047897           33 TVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-TEFPQFDLVVAN  102 (232)
Q Consensus        33 ~vLDiG~G~G~~t--~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~~~~~~D~Vi~n  102 (232)
                      +++|||+|.|.=+  .+++.+..+++.+|....-+...+.-....++ +|++++++++++ ....+||+|++.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~~~~fd~v~aR  122 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGL-SNVEVINGRAEEPEYRESFDVVTAR  122 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT--SSEEEEES-HHHTTTTT-EEEEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCC-CCEEEEEeeecccccCCCccEEEee
Confidence            8999999999744  44455788999999999999999999998898 589999999999 333489999985

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.29  E-value=3e-06  Score=62.38  Aligned_cols=59  Identities=17%  Similarity=0.256  Sum_probs=49.9

Q ss_pred             EEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           33 TVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +++|+|||.|..+..++..+  .+++++|.++.+++.+++++..+++ +++.+++..+.+-+
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~-~~v~~~~~al~~~~   61 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNL-PNVVLLNAAVGDRD   61 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCC-CcEEEEEeeeeCCC
Confidence            48999999999999998843  4799999999999999999988776 46888887776543

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=98.27  E-value=3.8e-06  Score=69.73  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecccCcc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIPYG  106 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~p~~  106 (232)
                      .+|.++||+||++|+.|..+++.+.+|+|||..+ +...    +..   .+++....+|...+..  .++|.++|++--.
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~~~----L~~---~~~V~h~~~d~fr~~p~~~~vDwvVcDmve~  281 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MAQS----LMD---TGQVEHLRADGFKFRPPRKNVDWLVCDMVEK  281 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cCHh----hhC---CCCEEEEeccCcccCCCCCCCCEEEEecccC
Confidence            5789999999999999999999999999999544 3222    222   2689999999987653  4789999997543


Q ss_pred             cc--hHHHHHHhc
Q 047897          107 IS--SPLVAKLVY  117 (232)
Q Consensus       107 ~~--~~~l~~~~~  117 (232)
                      ..  ...+..++.
T Consensus       282 P~rva~lm~~Wl~  294 (357)
T PRK11760        282 PARVAELMAQWLV  294 (357)
T ss_pred             HHHHHHHHHHHHh
Confidence            32  234444443

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=98.27  E-value=3.4e-06  Score=65.95  Aligned_cols=81  Identities=26%  Similarity=0.360  Sum_probs=58.7

Q ss_pred             EEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCCC-cce-eecccCcccc
Q 047897           34 VLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFPQ-FDL-VVANIPYGIS  108 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~~-~D~-Vi~n~p~~~~  108 (232)
                      |.||||-.|++...|++.+  .+++++|+++.-++.|+++....|+.++++++.+|.++. +... .|. ||+.+--...
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGMGG~lI   80 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGMGGELI   80 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-HHHH
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecCCHHHH
Confidence            6899999999999999954  589999999999999999999999888999999998764 3333 664 5555533333


Q ss_pred             hHHHHH
Q 047897          109 SPLVAK  114 (232)
Q Consensus       109 ~~~l~~  114 (232)
                      ..++..
T Consensus        81 ~~ILe~   86 (205)
T PF04816_consen   81 IEILEA   86 (205)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            334433

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.26  E-value=1.1e-06  Score=68.89  Aligned_cols=96  Identities=21%  Similarity=0.325  Sum_probs=67.5

Q ss_pred             ccCCCcccccCCHHHHHHHHHhc-CCCCCC--EEEEEcCCccHhHHHHHh--c--CCeEEEEEcCHHHHHHHHHHHhhcC
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKS-SINPDD--TVLEIGPGTGNLTLKLLE--V--SKKVHAIEIDERMVEILNRRAADSG   76 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~-~~~~~~--~vLDiG~G~G~~t~~l~~--~--~~~v~~vD~~~~~~~~a~~~~~~~~   76 (232)
                      +.+...-.|+.|++++.+-...+ ......  ++||||||.|.....+++  .  .-.|+++|.++.+++..+++.....
T Consensus        42 fy~~~~~rFfkdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e  121 (264)
T KOG2361|consen   42 FYKIHENRFFKDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE  121 (264)
T ss_pred             hhhhccccccchhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch
Confidence            45566677899988777655444 333333  799999999999999998  2  3689999999999999998875432


Q ss_pred             CCccEEEEEcCCCCCC----C--CCcceeec
Q 047897           77 FHDRLNVISKDALKTE----F--PQFDLVVA  101 (232)
Q Consensus        77 ~~~~~~~~~~D~~~~~----~--~~~D~Vi~  101 (232)
                        .++.-...|+....    .  +++|.|++
T Consensus       122 --~~~~afv~Dlt~~~~~~~~~~~svD~it~  150 (264)
T KOG2361|consen  122 --SRVEAFVWDLTSPSLKEPPEEGSVDIITL  150 (264)
T ss_pred             --hhhcccceeccchhccCCCCcCccceEEE
Confidence              45555555554332    1  26786664

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.24  E-value=7.3e-06  Score=64.02  Aligned_cols=93  Identities=24%  Similarity=0.234  Sum_probs=74.6

Q ss_pred             ccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897           10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK   86 (232)
Q Consensus        10 q~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (232)
                      -.+...++....+...+......++||||.=+|+-+..++.   ...+|+++|+|++..+.+.+..+..|...+++++++
T Consensus        53 ~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g  132 (237)
T KOG1663|consen   53 SEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG  132 (237)
T ss_pred             cceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec
Confidence            33555566666666666666778999999888876666655   578999999999999999999999999889999999


Q ss_pred             CCCCC--------CCCCcceeecc
Q 047897           87 DALKT--------EFPQFDLVVAN  102 (232)
Q Consensus        87 D~~~~--------~~~~~D~Vi~n  102 (232)
                      ++.+.        +...||.+|.+
T Consensus       133 ~a~esLd~l~~~~~~~tfDfaFvD  156 (237)
T KOG1663|consen  133 PALESLDELLADGESGTFDFAFVD  156 (237)
T ss_pred             chhhhHHHHHhcCCCCceeEEEEc
Confidence            99764        23479999975

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.17  E-value=9.6e-06  Score=68.03  Aligned_cols=78  Identities=24%  Similarity=0.269  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhc---------CCCccEEEEEcCCCCC------CC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADS---------GFHDRLNVISKDALKT------EF   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~D~~~~------~~   93 (232)
                      ++.+|||+|||.|+.+.-... ....++|+|++...++.|+++....         ...-...++.+|....      +.
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            678999999999996666655 6789999999999999999999321         1112467889988753      22


Q ss_pred             C--CcceeecccCccc
Q 047897           94 P--QFDLVVANIPYGI  107 (232)
Q Consensus        94 ~--~~D~Vi~n~p~~~  107 (232)
                      +  .||+|-+-...|.
T Consensus       142 ~~~~FDvVScQFalHY  157 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHY  157 (331)
T ss_dssp             TTS-EEEEEEES-GGG
T ss_pred             cCCCcceeehHHHHHH
Confidence            2  7899998766554

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.14  E-value=6.4e-06  Score=64.73  Aligned_cols=116  Identities=20%  Similarity=0.231  Sum_probs=76.8

Q ss_pred             HHHHhcCCC-CCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCC---
Q 047897           21 SIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFP---   94 (232)
Q Consensus        21 ~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~---   94 (232)
                      .+++..++. ++.++||||+.||++|..+++. ..+|+|+|+....+..-   ++.   ++++..++. |+..+..+   
T Consensus        69 ~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~k---LR~---d~rV~~~E~tN~r~l~~~~~~  142 (245)
T COG1189          69 KALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWK---LRN---DPRVIVLERTNVRYLTPEDFT  142 (245)
T ss_pred             HHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHh---Hhc---CCcEEEEecCChhhCCHHHcc
Confidence            444555554 5788999999999999999996 68999999987655432   221   145544433 44443322   


Q ss_pred             -CcceeecccCcccchHHHHHHhcCCCC--ccceEehhHHHHHHHHhcCCC
Q 047897           95 -QFDLVVANIPYGISSPLVAKLVYGTKS--FRSATLLLQKEFARRLLASPG  142 (232)
Q Consensus        95 -~~D~Vi~n~p~~~~~~~l~~~~~~~~~--~~~~~~~~q~e~~~rl~~~~g  142 (232)
                       ..|++++++.|-....++..+..-...  ..-..+--|-|.++..+.+.|
T Consensus       143 ~~~d~~v~DvSFISL~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkG  193 (245)
T COG1189         143 EKPDLIVIDVSFISLKLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKG  193 (245)
T ss_pred             cCCCeEEEEeehhhHHHHHHHHHHhcCCCceEEEEecchhhhhhhhcCcCc
Confidence             578999999988777666555443322  223344568899988876443

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.14  E-value=4.2e-06  Score=63.69  Aligned_cols=88  Identities=22%  Similarity=0.368  Sum_probs=70.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      +.+.+...-+.-.+.+|||+|+|+|.-+...+.. ...|++.|+++......+-|...+|+  ++.+.+.|... +.+.+
T Consensus        67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g-~~~~~  143 (218)
T COG3897          67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG-SPPAF  143 (218)
T ss_pred             HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC-CCcce
Confidence            3344444434446889999999999999888884 57899999999999999999999986  49999999988 66789


Q ss_pred             ceee-cccCcccc
Q 047897           97 DLVV-ANIPYGIS  108 (232)
Q Consensus        97 D~Vi-~n~p~~~~  108 (232)
                      |+++ +++-|+.+
T Consensus       144 Dl~LagDlfy~~~  156 (218)
T COG3897         144 DLLLAGDLFYNHT  156 (218)
T ss_pred             eEEEeeceecCch
Confidence            9877 46766655

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=98.13  E-value=2.2e-05  Score=63.91  Aligned_cols=91  Identities=15%  Similarity=0.257  Sum_probs=76.3

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      +|.+-+-+++..++.+.+.++...+|.--|.|+.+..+++.   .++++|+|.|+.+++.|++.+...+  +++.++++.
T Consensus         4 ~~~HipVLl~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~   81 (314)
T COG0275           4 SFRHIPVLLNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGN   81 (314)
T ss_pred             CCCccchHHHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCc
Confidence            45566889999999999999999999999999999999993   3789999999999999999998766  789999998


Q ss_pred             CCCCC-------CCCcceeeccc
Q 047897           88 ALKTE-------FPQFDLVVANI  103 (232)
Q Consensus        88 ~~~~~-------~~~~D~Vi~n~  103 (232)
                      +.++.       ...+|-|+.++
T Consensus        82 F~~l~~~l~~~~i~~vDGiL~DL  104 (314)
T COG0275          82 FANLAEALKELGIGKVDGILLDL  104 (314)
T ss_pred             HHHHHHHHHhcCCCceeEEEEec
Confidence            86652       12556555543

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=98.13  E-value=4.5e-06  Score=70.43  Aligned_cols=127  Identities=19%  Similarity=0.218  Sum_probs=92.4

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---C-Ccc
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---P-QFD   97 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~-~~D   97 (232)
                      .+++++|.+|||.++-+|+-|.+++.   .-..|+|.|.+..-+...+.++...|+ .+..+.+.|..+++.   + +||
T Consensus       236 aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~~fD  314 (460)
T KOG1122|consen  236 ALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPGSFD  314 (460)
T ss_pred             ecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCcccc
Confidence            45788999999999999998888877   457899999999999999999999998 578899999987652   2 799


Q ss_pred             eeecccCcccch----HHHHHHhcCCCCccceEehhHHHH---HHHHhcCCCCCcccchhhee
Q 047897           98 LVVANIPYGISS----PLVAKLVYGTKSFRSATLLLQKEF---ARRLLASPGDSEFNRLAVNV  153 (232)
Q Consensus        98 ~Vi~n~p~~~~~----~~l~~~~~~~~~~~~~~~~~q~e~---~~rl~~~~g~~~~~~~~~~~  153 (232)
                      .|..+-|...+.    +-..+.......+.. ...+|++.   |-.++..+|...|+++++..
T Consensus       315 RVLLDAPCSGtgvi~K~~~vkt~k~~~di~~-~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~  376 (460)
T KOG1122|consen  315 RVLLDAPCSGTGVISKDQSVKTNKTVKDILR-YAHLQRELLLSAIDLVKAGGVLVYSTCSITV  376 (460)
T ss_pred             eeeecCCCCCCcccccccccccchhHHHHHH-hHHHHHHHHHHHHhhccCCcEEEEEeeecch
Confidence            999999987631    111111110000111 11356655   45567777779999988854

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.12  E-value=6e-06  Score=66.54  Aligned_cols=76  Identities=24%  Similarity=0.392  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCC---CccEEEEEcCCCCC---CCC-Ccceee
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGF---HDRLNVISKDALKT---EFP-QFDLVV  100 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~---~~~~~~~~~D~~~~---~~~-~~D~Vi  100 (232)
                      ...+||=||-|.|..+..+++.  ..++++||+|+.+++.|++.+.....   ++|++++.+|+..+   ... .||+|+
T Consensus        76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi  155 (246)
T PF01564_consen   76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII  155 (246)
T ss_dssp             ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred             CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence            5679999999999999999984  47999999999999999998864321   36899999999764   233 799999


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      .+++-
T Consensus       156 ~D~~d  160 (246)
T PF01564_consen  156 VDLTD  160 (246)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            98753

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=98.03  E-value=3.3e-05  Score=62.52  Aligned_cols=77  Identities=13%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc--C-CCccEEEEEcCCCCCCCCCcceeecccCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS--G-FHDRLNVISKDALKTEFPQFDLVVANIPY  105 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~-~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~  105 (232)
                      ....+||=||.|.|+.++++++...+|+.||+|+++++.+++.+...  + .++|++++.. +.+...++||+||.+..+
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs~~  149 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQEP  149 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcCCC
Confidence            34579999999999999999996679999999999999999966432  1 2378888862 333233589999998654


Q ss_pred             c
Q 047897          106 G  106 (232)
Q Consensus       106 ~  106 (232)
                      .
T Consensus       150 ~  150 (262)
T PRK00536        150 D  150 (262)
T ss_pred             C
Confidence            3

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.03  E-value=1e-05  Score=66.18  Aligned_cols=80  Identities=25%  Similarity=0.326  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCc-----cEEEEEcCCCCC--------CCC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHD-----RLNVISKDALKT--------EFP   94 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~D~~~~--------~~~   94 (232)
                      ++++.++|+|||.|+-..-.-. .-..++|+||.+-.++.|+++.+...--.     .+.|+.+|-...        +.+
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            5778899999999997766655 45799999999999999999987542101     267888887542        233


Q ss_pred             CcceeecccCcccc
Q 047897           95 QFDLVVANIPYGIS  108 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~  108 (232)
                      +||+|-|-..+|..
T Consensus       196 ~fDivScQF~~HYa  209 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYA  209 (389)
T ss_pred             CcceeeeeeeEeee
Confidence            59999987665543

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=98.02  E-value=2.2e-05  Score=60.67  Aligned_cols=80  Identities=23%  Similarity=0.299  Sum_probs=50.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHH--h--cCCeEEEEEcCHHHHHHHHHHHhhc-----------------------------
Q 047897           29 NPDDTVLEIGPGTGNLTLKLL--E--VSKKVHAIEIDERMVEILNRRAADS-----------------------------   75 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~--~--~~~~v~~vD~~~~~~~~a~~~~~~~-----------------------------   75 (232)
                      ...-++.|.+||.|++.-.+.  .  .-..|+|-|+|+++++.|++|+...                             
T Consensus        50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~  129 (246)
T PF11599_consen   50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALE  129 (246)
T ss_dssp             -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred             CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence            345589999999999765543  3  2368999999999999999988532                             


Q ss_pred             ------------CCCccEEEEEcCCCCCC------CC-CcceeecccCcccc
Q 047897           76 ------------GFHDRLNVISKDALKTE------FP-QFDLVVANIPYGIS  108 (232)
Q Consensus        76 ------------~~~~~~~~~~~D~~~~~------~~-~~D~Vi~n~p~~~~  108 (232)
                                  |-.....+...|+++..      .. ..|+|+.++||.-.
T Consensus       130 sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~  181 (246)
T PF11599_consen  130 SADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEM  181 (246)
T ss_dssp             HHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCS
T ss_pred             HHHHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCccc
Confidence                        11123678888988742      22 46999999999754

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.02  E-value=2.2e-05  Score=61.51  Aligned_cols=71  Identities=21%  Similarity=0.332  Sum_probs=60.7

Q ss_pred             CCEEEEEcCCccHhHHHH--HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-C-cceeecc
Q 047897           31 DDTVLEIGPGTGNLTLKL--LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-Q-FDLVVAN  102 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l--~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~-~D~Vi~n  102 (232)
                      +.+++|||+|.|.=+..+  +.+..+|+.+|....-+..+++.....++ +|++++++.++++... . ||+|++.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i~~~RaE~~~~~~~~~D~vtsR  142 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEIVHGRAEEFGQEKKQYDVVTSR  142 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEEehhhHhhcccccccCcEEEee
Confidence            579999999999755554  44677799999999999999999988888 6899999999998754 4 9999985

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.00  E-value=3e-05  Score=60.08  Aligned_cols=96  Identities=16%  Similarity=0.231  Sum_probs=63.4

Q ss_pred             CCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE
Q 047897            6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNV   83 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~   83 (232)
                      |.+.+.-..|+.-+-.++...-...+.+|||||||+|..+..++.  +...-.-.|.++....-.+......+++.-..-
T Consensus         1 k~~spAaeRNk~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P   80 (204)
T PF06080_consen    1 KPFSPAAERNKDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPP   80 (204)
T ss_pred             CCCChhhhhCHhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCC
Confidence            345555566666665565544223343699999999999999998  456666889999987777777766665321233


Q ss_pred             EEcCCCCCC--CC--------Ccceeec
Q 047897           84 ISKDALKTE--FP--------QFDLVVA  101 (232)
Q Consensus        84 ~~~D~~~~~--~~--------~~D~Vi~  101 (232)
                      +.-|+.+.+  ..        .+|.|++
T Consensus        81 ~~lDv~~~~w~~~~~~~~~~~~~D~i~~  108 (204)
T PF06080_consen   81 LALDVSAPPWPWELPAPLSPESFDAIFC  108 (204)
T ss_pred             eEeecCCCCCccccccccCCCCcceeee
Confidence            455665542  22        6898887

The function of this family is unknown.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.96  E-value=1.2e-05  Score=66.24  Aligned_cols=90  Identities=16%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      |.+-|-+++++++.+.+.++..++|.--|.|+.|..+++  ...+|+|+|.|+.+++.+++++....  +++.++++++.
T Consensus         2 ~~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~--~r~~~~~~~F~   79 (310)
T PF01795_consen    2 FYHIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD--DRFIFIHGNFS   79 (310)
T ss_dssp             SS---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC--TTEEEEES-GG
T ss_pred             CceecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc--ceEEEEeccHH
Confidence            345578899999999999999999999999999999998  46999999999999999999987653  78999999987


Q ss_pred             CCC--------CCCcceeeccc
Q 047897           90 KTE--------FPQFDLVVANI  103 (232)
Q Consensus        90 ~~~--------~~~~D~Vi~n~  103 (232)
                      ++.        ...+|-|+.++
T Consensus        80 ~l~~~l~~~~~~~~~dgiL~DL  101 (310)
T PF01795_consen   80 NLDEYLKELNGINKVDGILFDL  101 (310)
T ss_dssp             GHHHHHHHTTTTS-EEEEEEE-
T ss_pred             HHHHHHHHccCCCccCEEEEcc
Confidence            752        23677777765

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.94  E-value=0.0001  Score=57.31  Aligned_cols=74  Identities=20%  Similarity=0.272  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccce-eeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDL-VVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~-Vi~n~  103 (232)
                      .+.++.||||-.|++...+.+  ....+++.|+++..++.|.+++...++.+++++..+|.+..-..  .+|. ||+.+
T Consensus        16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM   94 (226)
T COG2384          16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM   94 (226)
T ss_pred             cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC
Confidence            455699999999999999998  56899999999999999999999999988999999999664222  5775 44544

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=97.89  E-value=5.8e-05  Score=59.78  Aligned_cols=87  Identities=21%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             HHHHhcCCCCC--CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc---CC-----CccEEEEEcCCCC
Q 047897           21 SIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS---GF-----HDRLNVISKDALK   90 (232)
Q Consensus        21 ~i~~~~~~~~~--~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~-----~~~~~~~~~D~~~   90 (232)
                      .+++..+++++  .+|||.-+|.|.-+..++..+++|+++|.|+-+....+.-+...   ..     ..+++++++|..+
T Consensus        64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~  143 (234)
T PF04445_consen   64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALE  143 (234)
T ss_dssp             HHHHHTT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCC
T ss_pred             HHHHHhCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHH
Confidence            45556666665  48999999999999999888999999999998876665443321   11     1489999999988


Q ss_pred             CC---CCCcceeecccCccc
Q 047897           91 TE---FPQFDLVVANIPYGI  107 (232)
Q Consensus        91 ~~---~~~~D~Vi~n~p~~~  107 (232)
                      +-   ..++|+|..+|.|..
T Consensus       144 ~L~~~~~s~DVVY~DPMFp~  163 (234)
T PF04445_consen  144 YLRQPDNSFDVVYFDPMFPE  163 (234)
T ss_dssp             HCCCHSS--SEEEE--S---
T ss_pred             HHhhcCCCCCEEEECCCCCC
Confidence            52   348999999997764

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=97.88  E-value=2.1e-05  Score=61.42  Aligned_cols=79  Identities=15%  Similarity=0.217  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCcc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYG  106 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~~  106 (232)
                      ....++|||||.|++...+.. ...+++-+|.|..|++.++..-. .++  .+....+|-+.+++.  ++|+|++.+..|
T Consensus        72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~i--~~~~~v~DEE~Ldf~ens~DLiisSlslH  148 (325)
T KOG2940|consen   72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PSI--ETSYFVGDEEFLDFKENSVDLIISSLSLH  148 (325)
T ss_pred             hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cce--EEEEEecchhcccccccchhhhhhhhhhh
Confidence            345799999999999999987 55899999999999999887642 222  366778888877775  899999999988


Q ss_pred             cchHH
Q 047897          107 ISSPL  111 (232)
Q Consensus       107 ~~~~~  111 (232)
                      |..++
T Consensus       149 W~NdL  153 (325)
T KOG2940|consen  149 WTNDL  153 (325)
T ss_pred             hhccC
Confidence            88654

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=97.88  E-value=0.00011  Score=58.22  Aligned_cols=105  Identities=21%  Similarity=0.306  Sum_probs=60.4

Q ss_pred             cccCCCcccccCCHHHHHHHHHhcC--CCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897            3 FFHKSKGQHILTNQRVLDSIVRKSS--INPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD   79 (232)
Q Consensus         3 ~~~k~~gq~fl~~~~~~~~i~~~~~--~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~   79 (232)
                      +....+-|.+.+.+-.+.+..=.+.  .-.|.+||=+|=+.-. ++.++.....+|+.+|+|+.+++..++.++..|++ 
T Consensus        15 ~~~~~~DQ~~~T~eT~~~Ra~~~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-   93 (243)
T PF01861_consen   15 EPDVELDQGYATPETTLRRAALMAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-   93 (243)
T ss_dssp             ---GGGT---B-HHHHHHHHHHHHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---
T ss_pred             CCccccccccccHHHHHHHHHHHHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-
Confidence            4566788888887777766653332  2357899999855432 33334346789999999999999999999999974 


Q ss_pred             cEEEEEcCCCCC-CC---CCcceeecccCcccch
Q 047897           80 RLNVISKDALKT-EF---PQFDLVVANIPYGISS  109 (232)
Q Consensus        80 ~~~~~~~D~~~~-~~---~~~D~Vi~n~p~~~~~  109 (232)
                       ++.++.|+.+. |.   +.||++++||||....
T Consensus        94 -i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT~~G  126 (243)
T PF01861_consen   94 -IEAVHYDLRDPLPEELRGKFDVFFTDPPYTPEG  126 (243)
T ss_dssp             -EEEE---TTS---TTTSS-BSEEEE---SSHHH
T ss_pred             -eEEEEecccccCCHHHhcCCCEEEeCCCCCHHH
Confidence             99999999874 32   3799999999998753

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PRK11524 putative methyltransferase; Provisional

Probab=97.78  E-value=0.00011  Score=60.54  Aligned_cols=58  Identities=28%  Similarity=0.297  Sum_probs=52.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      ..+++.++...- .+|+.|||.-||+|..+.+..+.+.+.+|+|++++.++.|++++..
T Consensus       195 ~~L~erlI~~~S-~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        195 EALLKRIILASS-NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             HHHHHHHHHHhC-CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHh
Confidence            568888887764 5899999999999999999999999999999999999999999853

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.76  E-value=0.00038  Score=56.54  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=53.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--c--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--V--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ..-+||||+||.|......+.  .  ..++...|.++..++..++..+..|+.+-++|.++|+.+.
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~  200 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR  200 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence            456899999999998877776  2  3689999999999999999999999965569999999885

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.00012  Score=53.37  Aligned_cols=81  Identities=16%  Similarity=0.327  Sum_probs=67.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      +-++.++..+.-.+..+.+|+|+|.|.+..+.++.+ ..-+|+|+++-++..+|-..-+.|...+..|..-|..+.+...
T Consensus        59 eQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d  138 (199)
T KOG4058|consen   59 EQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD  138 (199)
T ss_pred             HHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence            344555666666676789999999999999988865 7889999999999999999988888788999999999888775


Q ss_pred             cc
Q 047897           96 FD   97 (232)
Q Consensus        96 ~D   97 (232)
                      +.
T Consensus       139 y~  140 (199)
T KOG4058|consen  139 YR  140 (199)
T ss_pred             cc
Confidence            54

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.74  E-value=9.3e-05  Score=57.91  Aligned_cols=84  Identities=15%  Similarity=0.225  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCccHhHHHH--HhcCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCC-C------CCCCccee
Q 047897           30 PDDTVLEIGPGTGNLTLKL--LEVSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALK-T------EFPQFDLV   99 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l--~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~-~------~~~~~D~V   99 (232)
                      ++-++||||.|.--+=-.+  ...+.+.+|.|+|+..++.|+.....+ +++..++++..--.+ +      -.+.||..
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~t  157 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDAT  157 (292)
T ss_pred             CceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeeeE
Confidence            4557899998875432211  126899999999999999999999876 555556665442211 1      12479999


Q ss_pred             ecccCcccchHHHH
Q 047897          100 VANIPYGISSPLVA  113 (232)
Q Consensus       100 i~n~p~~~~~~~l~  113 (232)
                      .||+|||.+.+...
T Consensus       158 lCNPPFh~s~~da~  171 (292)
T COG3129         158 LCNPPFHDSAADAR  171 (292)
T ss_pred             ecCCCcchhHHHHH
Confidence            99999998866543

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=97.71  E-value=0.00012  Score=57.79  Aligned_cols=56  Identities=29%  Similarity=0.510  Sum_probs=46.1

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHH
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~   70 (232)
                      .+..+++++++..- .+|+.|||.-||+|..+.+..+.+.+.+|+|+++..++.|++
T Consensus       176 kP~~l~~~lI~~~t-~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  176 KPVELIERLIKAST-NPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-HHHHHHHHHHHS--TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhh-ccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence            46789999998774 578999999999999999999999999999999999998874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.69  E-value=0.00065  Score=55.36  Aligned_cols=71  Identities=32%  Similarity=0.499  Sum_probs=46.8

Q ss_pred             CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHh-hcCCCccEEEEEcCCCCCCC--CCcceeecc
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAA-DSGFHDRLNVISKDALKTEF--PQFDLVVAN  102 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n  102 (232)
                      .+|+=||||+=-+|..++.    .+..|+++|+|+++++.+++... ..|+..++.|+.+|+.+...  ..||+|+..
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            4999999998877776665    24679999999999999999887 45566789999999987653  489988864

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.62  E-value=0.00029  Score=56.17  Aligned_cols=71  Identities=31%  Similarity=0.377  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeec
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVA  101 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~  101 (232)
                      ...++|+|||||.--++.....  .+..++|+|+|..+++.....+...+.  +.++...|.+.-+.+ ..|+...
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~~~~~~DlaLl  177 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDPPKEPADLALL  177 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccCCCCCcchhhH
Confidence            3467999999999999998877  357999999999999999999988875  477777888876433 5676553

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00037  Score=58.33  Aligned_cols=123  Identities=24%  Similarity=0.286  Sum_probs=85.1

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHhc--C----CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLEV--S----KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------   92 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~--~----~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------   92 (232)
                      .++++++++|||.++.+|.-|..+++.  .    ..|++-|.|+.-+..++..+..... ++..+...|+...+      
T Consensus       150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~-~~~~v~~~~~~~~p~~~~~~  228 (375)
T KOG2198|consen  150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPS-PNLLVTNHDASLFPNIYLKD  228 (375)
T ss_pred             hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCC-cceeeecccceecccccccc
Confidence            457789999999999999999998882  1    2899999999988888888754432 46666666665442      


Q ss_pred             -----CCCcceeecccCcccc-----hHHHHH--HhcCCCCccceEehhHHHHHH---HHhcCCCCCcccchhh
Q 047897           93 -----FPQFDLVVANIPYGIS-----SPLVAK--LVYGTKSFRSATLLLQKEFAR---RLLASPGDSEFNRLAV  151 (232)
Q Consensus        93 -----~~~~D~Vi~n~p~~~~-----~~~l~~--~~~~~~~~~~~~~~~q~e~~~---rl~~~~g~~~~~~~~~  151 (232)
                           ...||.|.++.|....     .+-+++  +....   ......+|..+.+   +++..+|...|+++|.
T Consensus       229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~---~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL  299 (375)
T KOG2198|consen  229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQR---ALGLHALQLRILRRGLRLLKVGGRLVYSTCSL  299 (375)
T ss_pred             CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhh---ccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence                 1258999999998755     122221  11111   0122356777754   4677888899988876

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=97.58  E-value=0.00019  Score=58.91  Aligned_cols=70  Identities=27%  Similarity=0.368  Sum_probs=55.6

Q ss_pred             EEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCcceeecccCccc
Q 047897           33 TVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQFDLVVANIPYGI  107 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~D~Vi~n~p~~~  107 (232)
                      +++|+.||.|.++..+.+.+. .+.++|+++.+++..+.|+..      . ++.+|+.++.    .+.+|++++.+|+..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~-~~~~Di~~~~~~~~~~~~D~l~~gpPCq~   74 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------K-LIEGDITKIDEKDFIPDIDLLTGGFPCQP   74 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------C-CccCccccCchhhcCCCCCEEEeCCCChh
Confidence            589999999999999888654 567999999999999888742      2 5677777664    347899999999875


Q ss_pred             ch
Q 047897          108 SS  109 (232)
Q Consensus       108 ~~  109 (232)
                      .+
T Consensus        75 fS   76 (275)
T cd00315          75 FS   76 (275)
T ss_pred             hh
Confidence            43

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=97.58  E-value=0.00018  Score=59.97  Aligned_cols=80  Identities=24%  Similarity=0.388  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh-c-CCeEEEEEcCHHHHHHHHHHH--hhc----CCCccEEEEEcCCCCCCC---CCcc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE-V-SKKVHAIEIDERMVEILNRRA--ADS----GFHDRLNVISKDALKTEF---PQFD   97 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~-~-~~~v~~vD~~~~~~~~a~~~~--~~~----~~~~~~~~~~~D~~~~~~---~~~D   97 (232)
                      +.-.+||=+|.|.|.-.+++++ + ..+++-+|.||+|++.++.+.  +..    -.++|++++..|+.++--   +.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            3456899999999999999999 3 589999999999999999443  221    124799999999988632   3799


Q ss_pred             eeecccCcccc
Q 047897           98 LVVANIPYGIS  108 (232)
Q Consensus        98 ~Vi~n~p~~~~  108 (232)
                      .||.++|-..+
T Consensus       368 ~vIVDl~DP~t  378 (508)
T COG4262         368 VVIVDLPDPST  378 (508)
T ss_pred             EEEEeCCCCCC
Confidence            99999875433

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.56  E-value=0.00057  Score=57.05  Aligned_cols=68  Identities=15%  Similarity=0.137  Sum_probs=50.9

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE--EEcCCCC
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNV--ISKDALK   90 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~--~~~D~~~   90 (232)
                      ..|++.+  .++..++|+|||.|.-+..+++      ....++++|+|.++++.+.+++....+ +.+++  +.+|+.+
T Consensus        68 ~~Ia~~i--~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~  143 (319)
T TIGR03439        68 SDIAASI--PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDD  143 (319)
T ss_pred             HHHHHhc--CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHH
Confidence            3444444  3666899999999998887776      136799999999999999999973333 34555  8888865

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PRK13699 putative methylase; Provisional

Probab=97.55  E-value=0.00047  Score=54.95  Aligned_cols=60  Identities=20%  Similarity=0.293  Sum_probs=52.3

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      +..+++.+++... .+|+.|||.-||+|..+.+..+.+.+.+|+|++++..+.+.+++...
T Consensus       149 P~~l~~~~i~~~s-~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        149 PVTSLQPLIESFT-HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             cHHHHHHHHHHhC-CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHH
Confidence            4568888887654 57899999999999999999889999999999999999999998653

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=97.53  E-value=0.00053  Score=61.07  Aligned_cols=101  Identities=26%  Similarity=0.412  Sum_probs=74.0

Q ss_pred             CCCcccccCCHHHHHHHHHhcCCC--CCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897            6 KSKGQHILTNQRVLDSIVRKSSIN--PDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGF   77 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~~~~--~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~   77 (232)
                      +..|+ |.+.+.+++.+.+.+...  ++..+.|..||+|.+......      ....++|-|....+...++.++..++.
T Consensus       192 t~~g~-~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~  270 (501)
T TIGR00497       192 KSGGE-FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNI  270 (501)
T ss_pred             CcCce-eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCC
Confidence            44555 666789999888877643  557899999999998876543      124689999999999999999766654


Q ss_pred             C-ccEEEEEcCCCCCC-C---CCcceeecccCccc
Q 047897           78 H-DRLNVISKDALKTE-F---PQFDLVVANIPYGI  107 (232)
Q Consensus        78 ~-~~~~~~~~D~~~~~-~---~~~D~Vi~n~p~~~  107 (232)
                      . +......+|-+..+ .   ..||.|++|+||+.
T Consensus       271 ~~~t~~~~~~dtl~~~d~~~~~~~D~v~~NpPf~~  305 (501)
T TIGR00497       271 DYANFNIINADTLTTKEWENENGFEVVVSNPPYSI  305 (501)
T ss_pred             CccccCcccCCcCCCccccccccCCEEeecCCccc
Confidence            3 23455566665532 1   26899999999975

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.50  E-value=0.00055  Score=56.14  Aligned_cols=60  Identities=22%  Similarity=0.301  Sum_probs=45.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      ..++.++......-...+|||+|||+|.-+-++.+   ...+++++|.|+.|++.++..+...
T Consensus        19 ~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   19 YRVLSELRKRLPDFRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             HHHHHHHHHhCcCCCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            44555555554333456899999999987766665   3578999999999999999987654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00029  Score=54.69  Aligned_cols=64  Identities=16%  Similarity=0.285  Sum_probs=50.1

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC----------C
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF----------P   94 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----------~   94 (232)
                      +.++..|+|+|+-+|+.+..+++.   ..+|+|+|+.|--           .. +++.++++|+++.+.          .
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~-~~V~~iq~d~~~~~~~~~l~~~l~~~  110 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PI-PGVIFLQGDITDEDTLEKLLEALGGA  110 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cC-CCceEEeeeccCccHHHHHHHHcCCC
Confidence            357899999999999999999883   3459999998731           11 569999999987642          1


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      .+|+|++++
T Consensus       111 ~~DvV~sD~  119 (205)
T COG0293         111 PVDVVLSDM  119 (205)
T ss_pred             CcceEEecC
Confidence            369999986

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.45  E-value=0.00057  Score=56.20  Aligned_cols=91  Identities=15%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             cccCCHHHHHHHHHhcCCC-CCCEEEEEcCCccH----hHHHHHhc------CCeEEEEEcCHHHHHHHHHHHhh-----
Q 047897           11 HILTNQRVLDSIVRKSSIN-PDDTVLEIGPGTGN----LTLKLLEV------SKKVHAIEIDERMVEILNRRAAD-----   74 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~~-~~~~vLDiG~G~G~----~t~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~-----   74 (232)
                      .|+.++...+.+.+.+... ..-+|+..||++|-    ++..+.+.      ..+|+|+|+|+.+++.|++-.-.     
T Consensus        95 ~FFRd~~~f~~L~~~~~~~~~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r  174 (287)
T PRK10611         95 AFFREAHHFPILAEHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELK  174 (287)
T ss_pred             CccCCcHHHHHHHHHHHhcCCCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHh
Confidence            4778877777776644221 23589999999994    44444441      25799999999999999876311     


Q ss_pred             ------------------cC-------CCccEEEEEcCCCCCCC---CCcceeec
Q 047897           75 ------------------SG-------FHDRLNVISKDALKTEF---PQFDLVVA  101 (232)
Q Consensus        75 ------------------~~-------~~~~~~~~~~D~~~~~~---~~~D~Vi~  101 (232)
                                        .+       +...+.|.+.|..+.+.   +.||+|+|
T Consensus       175 ~~p~~~~~ryF~~~~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~c  229 (287)
T PRK10611        175 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFC  229 (287)
T ss_pred             cCCHHHHHHHcccccCCCCceEEEChHHHccCEEEcccCCCCCCccCCCcceeeH
Confidence                              00       12467888999987543   47999998

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.40  E-value=0.0024  Score=50.07  Aligned_cols=93  Identities=19%  Similarity=0.276  Sum_probs=63.4

Q ss_pred             HHHHHHHHh---cCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           17 RVLDSIVRK---SSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        17 ~~~~~i~~~---~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+.++.-   +.+.+|.+||-+|.++|.....+++   ....|+|||.++....-+-..++..   +|+--+-+|+..
T Consensus        57 KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~  133 (229)
T PF01269_consen   57 KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARH  133 (229)
T ss_dssp             HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTS
T ss_pred             HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCC
Confidence            466666544   4577899999999999999999988   4679999999996655554444433   689899999975


Q ss_pred             CC-----CCCcceeecccCcccchHHH
Q 047897           91 TE-----FPQFDLVVANIPYGISSPLV  112 (232)
Q Consensus        91 ~~-----~~~~D~Vi~n~p~~~~~~~l  112 (232)
                      ..     .+.+|+|++++.-.-...++
T Consensus       134 P~~Y~~lv~~VDvI~~DVaQp~Qa~I~  160 (229)
T PF01269_consen  134 PEKYRMLVEMVDVIFQDVAQPDQARIA  160 (229)
T ss_dssp             GGGGTTTS--EEEEEEE-SSTTHHHHH
T ss_pred             hHHhhcccccccEEEecCCChHHHHHH
Confidence            42     24789999998755554444

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.39  E-value=0.00036  Score=54.22  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=51.8

Q ss_pred             cccCCHHHHHHHHHhcC--------CCCCCEEEEEcCCccH----hHHHHHh-----c--CCeEEEEEcCHHHHHHHHHH
Q 047897           11 HILTNQRVLDSIVRKSS--------INPDDTVLEIGPGTGN----LTLKLLE-----V--SKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~--------~~~~~~vLDiG~G~G~----~t~~l~~-----~--~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .|+.++...+.+.+.+-        ....-+|+..||++|-    ++..+.+     .  ..+++|.|+|+.+++.|++-
T Consensus         4 ~FFRd~~~f~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G   83 (196)
T PF01739_consen    4 YFFRDPEQFEALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG   83 (196)
T ss_dssp             -TTTTTTHHHHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence            36666665555544332        1234589999999994    4444444     1  24899999999999998753


Q ss_pred             Hhhc-------------------C--------CCccEEEEEcCCCC-CC-CCCcceeec
Q 047897           72 AADS-------------------G--------FHDRLNVISKDALK-TE-FPQFDLVVA  101 (232)
Q Consensus        72 ~~~~-------------------~--------~~~~~~~~~~D~~~-~~-~~~~D~Vi~  101 (232)
                      .-..                   +        +..++.|.+.|..+ .+ ...||+|+|
T Consensus        84 ~Y~~~~~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~C  142 (196)
T PF01739_consen   84 IYPERSLRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFC  142 (196)
T ss_dssp             EEEGGGGTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE
T ss_pred             CCCHHHHhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEe
Confidence            2100                   1        01478999999998 22 238999998

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.31  E-value=0.0004  Score=53.20  Aligned_cols=72  Identities=26%  Similarity=0.415  Sum_probs=49.4

Q ss_pred             HHHHHhcC-CCC--CCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           20 DSIVRKSS-INP--DDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        20 ~~i~~~~~-~~~--~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      .++.+..+ +.+  +.++||+||++|+++..+++..   .+|+|+|+.+.           ... .++..+++|+.+.. 
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~   77 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPEN   77 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEH
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhH
Confidence            34555555 344  4899999999999999999965   89999999875           111 35677777765421 


Q ss_pred             -----------CCCcceeeccc
Q 047897           93 -----------FPQFDLVVANI  103 (232)
Q Consensus        93 -----------~~~~D~Vi~n~  103 (232)
                                 ...+|+|+++.
T Consensus        78 ~~~i~~~~~~~~~~~dlv~~D~   99 (181)
T PF01728_consen   78 IKDIRKLLPESGEKFDLVLSDM   99 (181)
T ss_dssp             SHHGGGSHGTTTCSESEEEE--
T ss_pred             HHhhhhhccccccCcceecccc
Confidence                       13689999987

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.24  E-value=0.0012  Score=51.54  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeecc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      ...+.||.|+|.|..|..++- ...+|-.+|..+.+++.|++.+.... ..-.++.+.-..++..+  .||+|.+.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~Q  129 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQ  129 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEE
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEeh
Confidence            356899999999999998766 67899999999999999998876522 12357777777776543  79999874

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.23  E-value=0.00075  Score=57.65  Aligned_cols=59  Identities=32%  Similarity=0.516  Sum_probs=52.5

Q ss_pred             EEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           33 TVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .|||||+|+|.++...++ .+..|+|+|.=..|.+.|++....+|..+++.+++.-..+.
T Consensus        69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev  128 (636)
T KOG1501|consen   69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV  128 (636)
T ss_pred             EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence            589999999999999888 55789999999999999999999999988999988766554

>PHA01634 hypothetical protein

Probab=97.21  E-value=0.0023  Score=45.57  Aligned_cols=46  Identities=20%  Similarity=0.153  Sum_probs=40.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      .+.+|+|||.+.|.-+..++- .+.+|+++|.++.+.+..+++.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n   74 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF   74 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence            578999999999999988877 4578999999999999999988654

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=97.11  E-value=0.0011  Score=54.30  Aligned_cols=74  Identities=20%  Similarity=0.259  Sum_probs=55.5

Q ss_pred             EEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--------C-CCCcceeeccc
Q 047897           35 LEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--------E-FPQFDLVVANI  103 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--------~-~~~~D~Vi~n~  103 (232)
                      +|||.|.-.+--.+-.  .+...++.|+|.-.++.|.++...+++.+.+.+++....+.        . ...||.+.||+
T Consensus       107 iDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMcNP  186 (419)
T KOG2912|consen  107 IDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMCNP  186 (419)
T ss_pred             eeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEecCC
Confidence            6888777554333322  56889999999999999999999998877888887744322        1 12589999999


Q ss_pred             Ccccc
Q 047897          104 PYGIS  108 (232)
Q Consensus       104 p~~~~  108 (232)
                      ||.-.
T Consensus       187 PFfe~  191 (419)
T KOG2912|consen  187 PFFEN  191 (419)
T ss_pred             chhhc
Confidence            98765

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.06  E-value=0.0066  Score=49.45  Aligned_cols=71  Identities=24%  Similarity=0.350  Sum_probs=49.7

Q ss_pred             CCEEEEEcCCccH----hHHHHHh-c------CCeEEEEEcCHHHHHHHHHHHhh-----cCC-----------------
Q 047897           31 DDTVLEIGPGTGN----LTLKLLE-V------SKKVHAIEIDERMVEILNRRAAD-----SGF-----------------   77 (232)
Q Consensus        31 ~~~vLDiG~G~G~----~t~~l~~-~------~~~v~~vD~~~~~~~~a~~~~~~-----~~~-----------------   77 (232)
                      .-+|+..||++|-    ++..+.+ .      ..+|+|.|+|...++.|+.-.-.     .++                 
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5589999999994    4555554 1      36899999999999988753322     111                 


Q ss_pred             ------CccEEEEEcCCCCCC-CC-Ccceeec
Q 047897           78 ------HDRLNVISKDALKTE-FP-QFDLVVA  101 (232)
Q Consensus        78 ------~~~~~~~~~D~~~~~-~~-~~D~Vi~  101 (232)
                            ...|.|...|.++.+ .. .||+|+|
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC  208 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC  208 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEE
Confidence                  125667777777765 44 6999999

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=97.05  E-value=0.00064  Score=51.14  Aligned_cols=48  Identities=17%  Similarity=0.281  Sum_probs=38.2

Q ss_pred             EEEEcCHHHHHHHHHHHhhcC--CCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           56 HAIEIDERMVEILNRRAADSG--FHDRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        56 ~~vD~~~~~~~~a~~~~~~~~--~~~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      +|+|+|++|++.|+++....+  ...+++++++|+.+++++  +||.|+++.
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~   52 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY   52 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc
Confidence            489999999999988765322  124799999999998875  699999754

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=97.01  E-value=0.0014  Score=54.73  Aligned_cols=67  Identities=27%  Similarity=0.429  Sum_probs=52.7

Q ss_pred             EEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CC-CcceeecccCccc
Q 047897           33 TVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FP-QFDLVVANIPYGI  107 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~-~~D~Vi~n~p~~~  107 (232)
                      +++|+-||.|.++..+...+ .-+.++|+|+.+.+..+.|+      +  ....+|+.++.   .+ .+|++++.+|...
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~------~--~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~   73 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANF------P--EVICGDITEIDPSDLPKDVDLLIGGPPCQG   73 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHH------T--EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhcc------c--ccccccccccccccccccceEEEeccCCce
Confidence            68999999999999998866 46779999999999999988      3  78899998875   34 5999999998654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=96.96  E-value=0.0016  Score=54.58  Aligned_cols=67  Identities=22%  Similarity=0.345  Sum_probs=53.6

Q ss_pred             EEEEcCCccHhHHHHHhcCCeE-EEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCCcceeecccCccc
Q 047897           34 VLEIGPGTGNLTLKLLEVSKKV-HAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQFDLVVANIPYGI  107 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~~D~Vi~n~p~~~  107 (232)
                      |+|+.||.|.++..+.+.+.++ .++|+++..++..+.|+.      . .++++|+.++.   .+.+|++++.+|...
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~------~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~   71 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG------N-KVPFGDITKISPSDIPDFDILLGGFPCQP   71 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC------C-CCCccChhhhhhhhCCCcCEEEecCCCcc
Confidence            5899999999999998876665 589999999999888863      2 45668887765   346899999998654

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.91  E-value=0.0024  Score=51.03  Aligned_cols=69  Identities=23%  Similarity=0.343  Sum_probs=50.2

Q ss_pred             HHHHHHHHHhcCCCCC-CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPD-DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~-~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+=++.|++.+...++ ..|-|+|||.+.++.   .....|+.+|+.+                .+-+++.+|+.+.|.+
T Consensus       165 ~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~~~V~~cDm~~vPl~  225 (325)
T KOG3045|consen  165 ENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VNERVIACDMRNVPLE  225 (325)
T ss_pred             CChHHHHHHHHHhCcCceEEEecccchhhhhh---ccccceeeeeeec----------------CCCceeeccccCCcCc
Confidence            3445666666655544 568999999998876   3456899999754                3456789999998875


Q ss_pred             --Ccceeeccc
Q 047897           95 --QFDLVVANI  103 (232)
Q Consensus        95 --~~D~Vi~n~  103 (232)
                        +.|+++.-+
T Consensus       226 d~svDvaV~CL  236 (325)
T KOG3045|consen  226 DESVDVAVFCL  236 (325)
T ss_pred             cCcccEEEeeH
Confidence              789877644

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.82  E-value=0.011  Score=45.72  Aligned_cols=92  Identities=18%  Similarity=0.273  Sum_probs=67.4

Q ss_pred             HHHHHHHHh---cCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           17 RVLDSIVRK---SSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        17 ~~~~~i~~~---~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++.+.|+.-   +.+++|++||=+|+.+|....++++  ....++|||.++....-+-..+...   +|+--+.+|+...
T Consensus        60 KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P  136 (231)
T COG1889          60 KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKP  136 (231)
T ss_pred             HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCc
Confidence            466666654   4578999999999999999999998  4478999999987665544444432   6788999999764


Q ss_pred             C-----CCCcceeecccCcccchHH
Q 047897           92 E-----FPQFDLVVANIPYGISSPL  111 (232)
Q Consensus        92 ~-----~~~~D~Vi~n~p~~~~~~~  111 (232)
                      .     .+..|+|+.++.-.....+
T Consensus       137 ~~Y~~~Ve~VDviy~DVAQp~Qa~I  161 (231)
T COG1889         137 EKYRHLVEKVDVIYQDVAQPNQAEI  161 (231)
T ss_pred             HHhhhhcccccEEEEecCCchHHHH
Confidence            3     2468999988754433333

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=96.74  E-value=0.0038  Score=48.54  Aligned_cols=70  Identities=19%  Similarity=0.263  Sum_probs=40.2

Q ss_pred             HHHHHHHhcCCCC-CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           18 VLDSIVRKSSINP-DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~-~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      =++.+++.+.-.+ +..|-|+|||.+.++..+. ....|...|.-..                +-.++.+|+...|++  
T Consensus        59 Pvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~~V~SfDLva~----------------n~~Vtacdia~vPL~~~  121 (219)
T PF05148_consen   59 PVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKHKVHSFDLVAP----------------NPRVTACDIANVPLEDE  121 (219)
T ss_dssp             HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------STTEEES-TTS-S--TT
T ss_pred             cHHHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCceEEEeeccCC----------------CCCEEEecCccCcCCCC
Confidence            3456666665433 5689999999999997654 3567999998552                234788999998876  


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      +.|++|..+.
T Consensus       122 svDv~VfcLS  131 (219)
T PF05148_consen  122 SVDVAVFCLS  131 (219)
T ss_dssp             -EEEEEEES-
T ss_pred             ceeEEEEEhh
Confidence            7898887654

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=96.74  E-value=0.0011  Score=56.38  Aligned_cols=86  Identities=13%  Similarity=0.190  Sum_probs=65.8

Q ss_pred             ccCCCcccccCCHHHHH--HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCcc-
Q 047897            4 FHKSKGQHILTNQRVLD--SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDR-   80 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~--~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~-   80 (232)
                      |+-.+|..|...+-..+  ++..  -.++|+.|.|+.||.|-++..++..+++|++-|.+++++++++.++..+.+.+. 
T Consensus       223 Fk~DfskVYWnsRL~~Eherlsg--~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~  300 (495)
T KOG2078|consen  223 FKFDFSKVYWNSRLSHEHERLSG--LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSA  300 (495)
T ss_pred             EEEecceEEeeccchhHHHHHhh--ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhh
Confidence            44455555544332222  2222  235789999999999999999999899999999999999999999988776544 


Q ss_pred             EEEEEcCCCCC
Q 047897           81 LNVISKDALKT   91 (232)
Q Consensus        81 ~~~~~~D~~~~   91 (232)
                      +++++.|+.++
T Consensus       301 iei~Nmda~~F  311 (495)
T KOG2078|consen  301 IEIFNMDAKDF  311 (495)
T ss_pred             eeeecccHHHH
Confidence            99999998665

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.67  E-value=0.0069  Score=49.03  Aligned_cols=69  Identities=25%  Similarity=0.371  Sum_probs=45.6

Q ss_pred             CCEEEEEcCCccHhHHHHHh--c--------CCeEEEEEcCHHHHHHHHHHHhhcC-----CCccEEEEEcCCCCCCCCC
Q 047897           31 DDTVLEIGPGTGNLTLKLLE--V--------SKKVHAIEIDERMVEILNRRAADSG-----FHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~--~--------~~~v~~vD~~~~~~~~a~~~~~~~~-----~~~~~~~~~~D~~~~~~~~   95 (232)
                      .-+|+|+|+|+|.++..+++  .        ..+++.||+|+.+.+.-++++....     ...++.+ ..+..+.+  .
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--~   95 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--F   95 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS---C
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc--C
Confidence            36899999999999999988  1        2479999999999999888886631     2235666 33443333  2


Q ss_pred             cceeecc
Q 047897           96 FDLVVAN  102 (232)
Q Consensus        96 ~D~Vi~n  102 (232)
                      .-+|++|
T Consensus        96 ~~~iiaN  102 (252)
T PF02636_consen   96 PGFIIAN  102 (252)
T ss_dssp             CEEEEEE
T ss_pred             CEEEEEe
Confidence            2345554

; PDB: 4F3N_A 1ZKD_B.

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=96.64  E-value=0.012  Score=42.73  Aligned_cols=66  Identities=33%  Similarity=0.587  Sum_probs=45.3

Q ss_pred             EEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC--CCCC---Ccceeec
Q 047897           34 VLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK--TEFP---QFDLVVA  101 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~--~~~~---~~D~Vi~  101 (232)
                      ++|+|||+|..+ .+...   ...++++|.++.++..++......+. ..+.+..+|...  .++.   .+|.+..
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALGGVLPFEDSASFDLVIS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCC-CceEEEEeccccCCCCCCCCCceeEEee
Confidence            999999999976 33332   24899999999999885555433111 116788888776  4544   5888843

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=96.59  E-value=0.0033  Score=48.44  Aligned_cols=60  Identities=22%  Similarity=0.342  Sum_probs=47.5

Q ss_pred             CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcC------CCccEEEEEcCCCCC
Q 047897           32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSG------FHDRLNVISKDALKT   91 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~D~~~~   91 (232)
                      -.+.|||||-|.++..++.  +..-++|.||-....+..+++....+      .-.|+.+.+.++..+
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~  129 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF  129 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence            4589999999999999988  56788999999888888888776543      124677888887765

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=96.57  E-value=0.0043  Score=54.17  Aligned_cols=81  Identities=23%  Similarity=0.384  Sum_probs=47.5

Q ss_pred             HHHHHHHHHhcCC--CCC--CEEEEEcCCccHhHHHHHhcCCeEEEE---EcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           16 QRVLDSIVRKSSI--NPD--DTVLEIGPGTGNLTLKLLEVSKKVHAI---EIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        16 ~~~~~~i~~~~~~--~~~--~~vLDiG~G~G~~t~~l~~~~~~v~~v---D~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      ...++.|.+.+..  ..+  .++||+|||.|.++..|++++-..+.+   |..+..++.|-++    |++.-+.+.  -.
T Consensus        99 ~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~--~s  172 (506)
T PF03141_consen   99 DHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALER----GVPAMIGVL--GS  172 (506)
T ss_pred             HHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhc----Ccchhhhhh--cc
Confidence            3456666666654  222  368999999999999999876544444   3444555555444    332111111  12


Q ss_pred             CCCCCC--Ccceeecc
Q 047897           89 LKTEFP--QFDLVVAN  102 (232)
Q Consensus        89 ~~~~~~--~~D~Vi~n  102 (232)
                      ..+|++  .||+|-|.
T Consensus       173 ~rLPfp~~~fDmvHcs  188 (506)
T PF03141_consen  173 QRLPFPSNAFDMVHCS  188 (506)
T ss_pred             ccccCCccchhhhhcc
Confidence            234544  79998874

; GO: 0008168 methyltransferase activity

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.56  E-value=0.0011  Score=54.01  Aligned_cols=73  Identities=26%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             CCCEEEEEcCCccHhHH-HHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897           30 PDDTVLEIGPGTGNLTL-KLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~-~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n  102 (232)
                      .+..|+|+-+|.|++|. .+.. ....|+|+|.+|..++.+++++..+++.++..+++||-...-.. ..|.|...
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG  269 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG  269 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec
Confidence            45789999999999999 5555 56789999999999999999999888777888888887665443 55766543

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=96.53  E-value=0.0072  Score=50.92  Aligned_cols=72  Identities=22%  Similarity=0.250  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----CcceeecccC
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVANIP  104 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~n~p  104 (232)
                      .-+++|+-||.|.+...+...+ .-+.++|+|+..++..+.|+..      -.++.+|+.+....     ++|++++.+|
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP   76 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP   76 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence            3479999999999999988866 4566999999999999988742      45677777755431     6799999999


Q ss_pred             cccc
Q 047897          105 YGIS  108 (232)
Q Consensus       105 ~~~~  108 (232)
                      +..-
T Consensus        77 CQ~F   80 (328)
T COG0270          77 CQDF   80 (328)
T ss_pred             Ccch
Confidence            7644

>PRK10458 DNA cytosine methylase; Provisional

Probab=96.52  E-value=0.019  Score=50.62  Aligned_cols=76  Identities=14%  Similarity=0.175  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------------
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------------   92 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------------   92 (232)
                      .-+++|+-||.|+++..+-..+. -|.++|+++.+.+..+.|+...   +....+.+|+.++.                 
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~  164 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRDITLSHKEGVSDEEAAEHIR  164 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhhCccccccccchhhhhhhhh
Confidence            44899999999999999977554 5579999999999888886321   22345566666653                 


Q ss_pred             --CCCcceeecccCcccch
Q 047897           93 --FPQFDLVVANIPYGISS  109 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~~  109 (232)
                        .+..|++++.+|+..-+
T Consensus       165 ~~~p~~DvL~gGpPCQ~FS  183 (467)
T PRK10458        165 QHIPDHDVLLAGFPCQPFS  183 (467)
T ss_pred             ccCCCCCEEEEcCCCCccc
Confidence              23679999999876543

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=96.44  E-value=0.02  Score=48.10  Aligned_cols=64  Identities=16%  Similarity=0.171  Sum_probs=47.2

Q ss_pred             ccCCHHHHHHHHH-----------hcCCCCCCEEEEEcCCccHhHHHHHh----------cCCeEEEEEcCHHHHHHHHH
Q 047897           12 ILTNQRVLDSIVR-----------KSSINPDDTVLEIGPGTGNLTLKLLE----------VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        12 fl~~~~~~~~i~~-----------~~~~~~~~~vLDiG~G~G~~t~~l~~----------~~~~v~~vD~~~~~~~~a~~   70 (232)
                      |.+.|++..-+-+           .......-.++|||+|.|.++..+++          ...++..||+|+++.+.=++
T Consensus        48 FiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~  127 (370)
T COG1565          48 FITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKE  127 (370)
T ss_pred             eeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHH
Confidence            7777766543332           22322345799999999999998887          15689999999999988888


Q ss_pred             HHhhc
Q 047897           71 RAADS   75 (232)
Q Consensus        71 ~~~~~   75 (232)
                      ++...
T Consensus       128 ~L~~~  132 (370)
T COG1565         128 TLKAT  132 (370)
T ss_pred             HHhcc
Confidence            87654

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.38  E-value=0.011  Score=47.86  Aligned_cols=59  Identities=15%  Similarity=0.177  Sum_probs=39.6

Q ss_pred             CEEEEEcCCccH--hHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           32 DTVLEIGPGTGN--LTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        32 ~~vLDiG~G~G~--~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ...||||||.-.  .+.++++   +.++|+-+|.||-.+.+++..+....- ++..++++|+.+.
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p  133 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDP  133 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-H
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCH
Confidence            469999999763  5556655   679999999999999999999876532 3489999999874

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.37  E-value=0.016  Score=48.44  Aligned_cols=80  Identities=19%  Similarity=0.275  Sum_probs=60.9

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecc-cCcccch
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVAN-IPYGISS  109 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n-~p~~~~~  109 (232)
                      -...+|+|.|.|.++..++....++-+++.|...+-.++..+. .|    ++.+.||.++- .|+-|+|+.- +--+|++
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~-~P~~daI~mkWiLhdwtD  251 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQD-TPKGDAIWMKWILHDWTD  251 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceeccccccc-CCCcCeEEEEeecccCCh
Confidence            4789999999999999999966779999999988888777764 33    78899999887 6777877752 3344555


Q ss_pred             HHHHHHh
Q 047897          110 PLVAKLV  116 (232)
Q Consensus       110 ~~l~~~~  116 (232)
                      +.+.+++
T Consensus       252 edcvkiL  258 (342)
T KOG3178|consen  252 EDCVKIL  258 (342)
T ss_pred             HHHHHHH
Confidence            4444443

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.27  E-value=0.0017  Score=50.14  Aligned_cols=65  Identities=20%  Similarity=0.383  Sum_probs=51.8

Q ss_pred             CCcccccCCHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHH
Q 047897            7 SKGQHILTNQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus         7 ~~gq~fl~~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      ..|.+|+-+++--++++..-++   +...++||+|+|.|-+|..++....+|+|.|.|..|...+++.
T Consensus        86 grGsMFifSe~QF~klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen   86 GRGSMFIFSEEQFRKLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             ccCceEEecHHHHHHHHhcCCCccCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhc
Confidence            4678888888877777754432   2346899999999999999988778899999999988776654

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=96.09  E-value=0.0044  Score=42.95  Aligned_cols=68  Identities=25%  Similarity=0.238  Sum_probs=24.4

Q ss_pred             EEEcCCccHhHHHHHh---cC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeeccc
Q 047897           35 LEIGPGTGNLTLKLLE---VS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANI  103 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~---~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~  103 (232)
                      ||||+..|..+..+++   ..  .+++++|..+. .+..++..+..++.++++++.+|..+.    +.+++|+++.+-
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            6999999999888877   22  37999999995 334444444445557899999999754    224789998764

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.08  E-value=0.01  Score=45.28  Aligned_cols=67  Identities=18%  Similarity=0.311  Sum_probs=48.2

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCC----------CC
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKT----------EF   93 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~----------~~   93 (232)
                      ++++++|||+||.+|..+....+   +...|.|||+-.-           ... +.+.++.+ |+.+.          +.
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~-~Ga~~i~~~dvtdp~~~~ki~e~lp~  134 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPP-EGATIIQGNDVTDPETYRKIFEALPN  134 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCC-CCcccccccccCCHHHHHHHHHhCCC
Confidence            35799999999999999998887   4688999998431           111 34666666 77654          22


Q ss_pred             CCcceeecccCcc
Q 047897           94 PQFDLVVANIPYG  106 (232)
Q Consensus        94 ~~~D~Vi~n~p~~  106 (232)
                      ...|+|++++--+
T Consensus       135 r~VdvVlSDMapn  147 (232)
T KOG4589|consen  135 RPVDVVLSDMAPN  147 (232)
T ss_pred             CcccEEEeccCCC
Confidence            2679999987433

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.05  E-value=0.0094  Score=41.19  Aligned_cols=33  Identities=18%  Similarity=0.180  Sum_probs=28.2

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCH
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE   62 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~   62 (232)
                      +....+|||||.|.+..-|..-+.+-.|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGYPGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCCCcccccccc
Confidence            344689999999999999999889999999643

; GO: 0008168 methyltransferase activity

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=96.02  E-value=0.025  Score=47.82  Aligned_cols=43  Identities=35%  Similarity=0.422  Sum_probs=35.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .+-+.|+|+|.|.|+++..+.- .+..|+|||-|..+.+.|++.
T Consensus       152 ~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  152 TGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             cCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            3456899999999999999876 789999999998777666543

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.00  E-value=0.021  Score=48.23  Aligned_cols=86  Identities=19%  Similarity=0.210  Sum_probs=68.9

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC---
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP---   94 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~---   94 (232)
                      .....+++.+|..|+|++|-+|.-|..++.   ...++.|+|.|..-.+..++.+...|. ..++...+|++..+.+   
T Consensus       204 lpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~-~~~~~~~~df~~t~~~~~~  282 (413)
T KOG2360|consen  204 LPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGV-SIVESVEGDFLNTATPEKF  282 (413)
T ss_pred             chhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCC-CccccccccccCCCCcccc
Confidence            344566777889999999999999888887   468999999999999999999999887 4788889999885322   


Q ss_pred             -CcceeecccCccc
Q 047897           95 -QFDLVVANIPYGI  107 (232)
Q Consensus        95 -~~D~Vi~n~p~~~  107 (232)
                       ..-.++++++...
T Consensus       283 ~~v~~iL~DpscSg  296 (413)
T KOG2360|consen  283 RDVTYILVDPSCSG  296 (413)
T ss_pred             cceeEEEeCCCCCC
Confidence             3346777776543

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=95.92  E-value=0.015  Score=47.04  Aligned_cols=103  Identities=16%  Similarity=0.302  Sum_probs=73.2

Q ss_pred             ccCCCcccccCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHH--hcCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRRAADSGFHD   79 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~   79 (232)
                      +...+.|.|.+++-.+.++.-..  +--.|..|+=+| -.-..+.+++  ....+|..+|+|+.++..-.+.+...|+ .
T Consensus       124 p~~~yDQgfvTpEttv~Rv~lm~~RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~  201 (354)
T COG1568         124 PLHQYDQGFVTPETTVSRVALMYSRGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-N  201 (354)
T ss_pred             cchhcccccccccceeeeeeeeccccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-c
Confidence            44567888888666655543211  122466788888 3333333333  3678999999999999999999999998 5


Q ss_pred             cEEEEEcCCCCCCC----CCcceeecccCcccc
Q 047897           80 RLNVISKDALKTEF----PQFDLVVANIPYGIS  108 (232)
Q Consensus        80 ~~~~~~~D~~~~~~----~~~D~Vi~n~p~~~~  108 (232)
                      |++.+.-|..+.-.    ..||+++.+||+.+.
T Consensus       202 ~ie~~~~Dlr~plpe~~~~kFDvfiTDPpeTi~  234 (354)
T COG1568         202 NIEAFVFDLRNPLPEDLKRKFDVFITDPPETIK  234 (354)
T ss_pred             chhheeehhcccChHHHHhhCCeeecCchhhHH
Confidence            78888888876422    279999999997655

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=95.62  E-value=0.027  Score=43.87  Aligned_cols=60  Identities=22%  Similarity=0.278  Sum_probs=33.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +.+.|+|+|.-.|+-+...++      ..++|+|+|++-.....  +..+.+.+.+++++++||..+.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDP   97 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSST
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCH
Confidence            456999999999887766654      35899999997544322  2233334447899999999765

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=95.62  E-value=0.076  Score=41.58  Aligned_cols=82  Identities=13%  Similarity=0.182  Sum_probs=60.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC----CC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK----TE   92 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~----~~   92 (232)
                      +.....+.+. .+|.+||+||-|.|.....+.+ ...+-+.+|.+++.++..++..-...  +|+.+..|--.+    ++
T Consensus        90 iMha~A~ai~-tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~  166 (271)
T KOG1709|consen   90 IMHALAEAIS-TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLP  166 (271)
T ss_pred             HHHHHHHHHh-hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhcccc
Confidence            3334444443 5788999999999998888877 56788899999999998887764322  678888875544    34


Q ss_pred             CCCcceeecc
Q 047897           93 FPQFDLVVAN  102 (232)
Q Consensus        93 ~~~~D~Vi~n  102 (232)
                      ...||-|.-+
T Consensus       167 d~~FDGI~yD  176 (271)
T KOG1709|consen  167 DKHFDGIYYD  176 (271)
T ss_pred             ccCcceeEee
Confidence            4478988865

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=95.59  E-value=0.041  Score=47.19  Aligned_cols=86  Identities=24%  Similarity=0.377  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCCCCC---CCCcceeecc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDALKTE---FPQFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~~~~---~~~~D~Vi~n  102 (232)
                      .+-++||.=+|+|.=+...+..   ..+|++-|+|+++++..++|++.+++.+ ++++.+.|+..+-   ...||+|=.+
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD  128 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD  128 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence            3458999999999988777662   4799999999999999999999999876 6999999997753   3368877666


Q ss_pred             cCcccchHHHHHHh
Q 047897          103 IPYGISSPLVAKLV  116 (232)
Q Consensus       103 ~p~~~~~~~l~~~~  116 (232)
                       ||+...|.+...+
T Consensus       129 -PfGSp~pfldsA~  141 (377)
T PF02005_consen  129 -PFGSPAPFLDSAL  141 (377)
T ss_dssp             --SS--HHHHHHHH
T ss_pred             -CCCCccHhHHHHH
Confidence             6777777765443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=95.58  E-value=0.028  Score=41.04  Aligned_cols=52  Identities=27%  Similarity=0.424  Sum_probs=40.6

Q ss_pred             eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---C-CcceeecccCc
Q 047897           54 KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---P-QFDLVVANIPY  105 (232)
Q Consensus        54 ~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~-~~D~Vi~n~p~  105 (232)
                      +|+|+||.+++++.+++++...++.+++++++.+=..++.   + ++|.++.|+-|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLGY   56 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLGY   56 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEESB
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECCc
Confidence            6899999999999999999999887789999887655432   2 68999999755

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=95.56  E-value=0.0099  Score=48.25  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=53.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--C
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--Q   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~   95 (232)
                      .++.+++..+  .+..++|+|||.|-.+..  .+...++|.|++..++..++..-       ...+..+|++..+..  +
T Consensus        35 ~v~qfl~~~~--~gsv~~d~gCGngky~~~--~p~~~~ig~D~c~~l~~~ak~~~-------~~~~~~ad~l~~p~~~~s  103 (293)
T KOG1331|consen   35 MVRQFLDSQP--TGSVGLDVGCGNGKYLGV--NPLCLIIGCDLCTGLLGGAKRSG-------GDNVCRADALKLPFREES  103 (293)
T ss_pred             HHHHHHhccC--CcceeeecccCCcccCcC--CCcceeeecchhhhhccccccCC-------CceeehhhhhcCCCCCCc
Confidence            4455555553  478899999999975532  25678999999999888776532       126788999998875  7


Q ss_pred             cceeec
Q 047897           96 FDLVVA  101 (232)
Q Consensus        96 ~D~Vi~  101 (232)
                      ||..++
T Consensus       104 ~d~~ls  109 (293)
T KOG1331|consen  104 FDAALS  109 (293)
T ss_pred             cccchh
Confidence            887765

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=95.53  E-value=0.076  Score=37.92  Aligned_cols=80  Identities=24%  Similarity=0.385  Sum_probs=43.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ++++.+.+..   ..++++|+|-|.=. .+..|.+.+..|+++|+++.       .+.     ..+.++..|+.+.+.+ 
T Consensus         3 ~~a~~ia~~~---~~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~-------~a~-----~g~~~v~DDif~P~l~i   67 (127)
T PF03686_consen    3 DFAEYIARLN---NYGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR-------KAP-----EGVNFVVDDIFNPNLEI   67 (127)
T ss_dssp             HHHHHHHHHS----SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHH
T ss_pred             hHHHHHHHhC---CCCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc-------ccc-----cCcceeeecccCCCHHH
Confidence            3455666554   34499999999876 44445557899999999997       221     2467899999987654 


Q ss_pred             --Ccceeec-ccCcccchHH
Q 047897           95 --QFDLVVA-NIPYGISSPL  111 (232)
Q Consensus        95 --~~D~Vi~-n~p~~~~~~~  111 (232)
                        ..|+|.+ ++|--...++
T Consensus        68 Y~~a~lIYSiRPP~El~~~i   87 (127)
T PF03686_consen   68 YEGADLIYSIRPPPELQPPI   87 (127)
T ss_dssp             HTTEEEEEEES--TTSHHHH
T ss_pred             hcCCcEEEEeCCChHHhHHH
Confidence              5688887 6664444333

; PDB: 2K4M_A.

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.22  E-value=0.039  Score=46.99  Aligned_cols=74  Identities=22%  Similarity=0.230  Sum_probs=62.2

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeec
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVA  101 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~  101 (232)
                      ..++..++|+|||.|..+..+.. ....++|++.++..+..+.......++..+..++.+|+.+.+++  .||.+-+
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~  184 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF  184 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE
Confidence            45677899999999999999988 67999999999999988888887777766677799999988776  6786554

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=94.95  E-value=0.24  Score=37.22  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=59.5

Q ss_pred             CcccccCCHHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHH-HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897            8 KGQHILTNQRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI   84 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l-~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   84 (232)
                      +.|-|.. ++.++.+++.+.-  .++.+|+=|||=+-.....- .....+++..|+|..+...        +  ++ .|+
T Consensus         2 lsQfwYs-~~T~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~--------~--~~-~F~   69 (162)
T PF10237_consen    2 LSQFWYS-DETAEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQF--------G--GD-EFV   69 (162)
T ss_pred             ccccccC-HHHHHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhc--------C--Cc-ceE
Confidence            4564554 6777777765532  35678999998887655554 2256899999999865432        2  23 455


Q ss_pred             EcCCCCC---C---CCCcceeecccCcccchHHH
Q 047897           85 SKDALKT---E---FPQFDLVVANIPYGISSPLV  112 (232)
Q Consensus        85 ~~D~~~~---~---~~~~D~Vi~n~p~~~~~~~l  112 (232)
                      .-|....   +   ..++|+|+++||| .+.+.+
T Consensus        70 fyD~~~p~~~~~~l~~~~d~vv~DPPF-l~~ec~  102 (162)
T PF10237_consen   70 FYDYNEPEELPEELKGKFDVVVIDPPF-LSEECL  102 (162)
T ss_pred             ECCCCChhhhhhhcCCCceEEEECCCC-CCHHHH
Confidence            5555432   1   1379999999999 555544

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=94.92  E-value=0.2  Score=41.36  Aligned_cols=60  Identities=22%  Similarity=0.390  Sum_probs=52.0

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      +..+.++++.. --.+++.|||.-+|+|..+.+....+.+.+|+|+++..++.+.++....
T Consensus       208 P~~l~~r~i~~-~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         208 PLALIERLIRD-YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             hHHHHHHHHHh-cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence            45677777776 4568999999999999999998889999999999999999999998653

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.77  E-value=0.048  Score=46.30  Aligned_cols=89  Identities=21%  Similarity=0.315  Sum_probs=63.3

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHh-------hcCC-CccEEE
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAA-------DSGF-HDRLNV   83 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~-------~~~~-~~~~~~   83 (232)
                      +.++-+..+++.+++.+++...|+|.|-|.+...++.  ....-+|+|+.....+.+..+..       -.|- +..++.
T Consensus       176 ~~~~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~  255 (419)
T KOG3924|consen  176 TQLEQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIET  255 (419)
T ss_pred             hhHHHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceee
Confidence            4467778888999999999999999999999988887  34677899987654443333221       1232 246899


Q ss_pred             EEcCCCCCCC-----CCcceeecc
Q 047897           84 ISKDALKTEF-----PQFDLVVAN  102 (232)
Q Consensus        84 ~~~D~~~~~~-----~~~D~Vi~n  102 (232)
                      +++++.+...     ...++|+.|
T Consensus       256 i~gsf~~~~~v~eI~~eatvi~vN  279 (419)
T KOG3924|consen  256 IHGSFLDPKRVTEIQTEATVIFVN  279 (419)
T ss_pred             cccccCCHHHHHHHhhcceEEEEe
Confidence            9999987643     245666664

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=94.63  E-value=0.14  Score=45.25  Aligned_cols=86  Identities=23%  Similarity=0.393  Sum_probs=60.3

Q ss_pred             HHHHHHHHhcCCC-C--CCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           17 RVLDSIVRKSSIN-P--DDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        17 ~~~~~i~~~~~~~-~--~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      .+.+.+.+...-. .  -..|+=+|.|.|-+..+.++      +.-+++++|.+|.++-.+... .-...+.+++++.+|
T Consensus       351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~D  429 (649)
T KOG0822|consen  351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSD  429 (649)
T ss_pred             HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEecc
Confidence            3445555543221 1  33578899999988777665      346889999999988776552 222344789999999


Q ss_pred             CCCCCCC--Ccceeeccc
Q 047897           88 ALKTEFP--QFDLVVANI  103 (232)
Q Consensus        88 ~~~~~~~--~~D~Vi~n~  103 (232)
                      ..+++.+  +.|++++-+
T Consensus       430 MR~w~ap~eq~DI~VSEL  447 (649)
T KOG0822|consen  430 MRKWNAPREQADIIVSEL  447 (649)
T ss_pred             ccccCCchhhccchHHHh
Confidence            9998753  789988754

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=94.54  E-value=0.34  Score=39.55  Aligned_cols=41  Identities=24%  Similarity=0.238  Sum_probs=35.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHH
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~   70 (232)
                      .+.+||=.|||.|.++..++..+..+.|.|.|--|+-..+-
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~f   96 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNF   96 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHH
Confidence            35689999999999999999999999999999988655443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=94.43  E-value=0.2  Score=39.16  Aligned_cols=93  Identities=16%  Similarity=0.204  Sum_probs=65.0

Q ss_pred             cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccH--hHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEE
Q 047897            9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGN--LTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLN   82 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~--~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~   82 (232)
                      ++++- .|.+.+.|..++.-..-..++|+.|+-|.  .|..|+.    -+.++++|-.+++-....++.+...++.+-++
T Consensus        21 c~~~~-ep~~aEfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vE   99 (218)
T PF07279_consen   21 CKKFK-EPGVAEFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVE   99 (218)
T ss_pred             hhhcC-CCCHHHHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccce
Confidence            44443 47788888877765566689999766442  3444433    57899999999998888888888777755579


Q ss_pred             EEEcCCCC-C--CCCCcceeecc
Q 047897           83 VISKDALK-T--EFPQFDLVVAN  102 (232)
Q Consensus        83 ~~~~D~~~-~--~~~~~D~Vi~n  102 (232)
                      |+.+|..+ .  .+...|.++.+
T Consensus       100 fvvg~~~e~~~~~~~~iDF~vVD  122 (218)
T PF07279_consen  100 FVVGEAPEEVMPGLKGIDFVVVD  122 (218)
T ss_pred             EEecCCHHHHHhhccCCCEEEEe
Confidence            99998543 2  23467877654

The function of this family is unknown.

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=94.13  E-value=0.13  Score=40.97  Aligned_cols=89  Identities=20%  Similarity=0.246  Sum_probs=60.7

Q ss_pred             HHHHHHH---HhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           17 RVLDSIV---RKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        17 ~~~~~i~---~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++++.|+   +.+-++++.+||=+|+++|.....+.+   +..-|+|||.++..-..+-..+...   .|+--+..|+..
T Consensus       140 KLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIiEDArh  216 (317)
T KOG1596|consen  140 KLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPIIEDARH  216 (317)
T ss_pred             HHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeeeccCCC
Confidence            4555554   345578999999999999998888887   5678999999875433332222221   577788888864


Q ss_pred             CC-----CCCcceeecccCcccc
Q 047897           91 TE-----FPQFDLVVANIPYGIS  108 (232)
Q Consensus        91 ~~-----~~~~D~Vi~n~p~~~~  108 (232)
                      ..     .+-.|+|+++++-...
T Consensus       217 P~KYRmlVgmVDvIFaDvaqpdq  239 (317)
T KOG1596|consen  217 PAKYRMLVGMVDVIFADVAQPDQ  239 (317)
T ss_pred             chheeeeeeeEEEEeccCCCchh
Confidence            32     1246999998764433

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=94.01  E-value=0.2  Score=40.70  Aligned_cols=78  Identities=13%  Similarity=0.293  Sum_probs=51.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-c------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-V------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      ..++..|.+.--+.++..++|.|||.|.++..++. .      ...++.||....-. .+...+........++=+..|+
T Consensus         4 sSli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI   82 (259)
T PF05206_consen    4 SSLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDI   82 (259)
T ss_pred             HHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEe
Confidence            34566665554456777899999999999999988 2      35889999865332 2223333222112477778888


Q ss_pred             CCCCCC
Q 047897           89 LKTEFP   94 (232)
Q Consensus        89 ~~~~~~   94 (232)
                      .++++.
T Consensus        83 ~dl~l~   88 (259)
T PF05206_consen   83 KDLDLS   88 (259)
T ss_pred             eccchh
Confidence            887654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.92  E-value=0.14  Score=35.81  Aligned_cols=58  Identities=29%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             CCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecccC
Q 047897           39 PGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANIP  104 (232)
Q Consensus        39 ~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~p  104 (232)
                      ||.|.++..+++    .+.+|+.+|.|++.++.+++.        .+.++.||+.+..      ..+.+.|++..+
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~--------~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE--------GVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT--------TSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc--------ccccccccchhhhHHhhcCccccCEEEEccC
Confidence            566777777776    345899999999998777654        2679999998753      236677776544

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PTZ00357 methyltransferase; Provisional

Probab=93.90  E-value=0.29  Score=44.88  Aligned_cols=71  Identities=27%  Similarity=0.342  Sum_probs=49.8

Q ss_pred             EEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHh-hcCC-------CccEEEEEcCCCCCCCC----
Q 047897           33 TVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAA-DSGF-------HDRLNVISKDALKTEFP----   94 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~-~~~~-------~~~~~~~~~D~~~~~~~----   94 (232)
                      .|+=+|+|.|-+....++      ...+|++||.++..+.....+.. ...+       .++++++.+|...+..+    
T Consensus       703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~  782 (1072)
T PTZ00357        703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG  782 (1072)
T ss_pred             EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence            589999999988777666      23589999999765444444431 1122       24699999999987432    


Q ss_pred             ---------Ccceeeccc
Q 047897           95 ---------QFDLVVANI  103 (232)
Q Consensus        95 ---------~~D~Vi~n~  103 (232)
                               .+|+||+-+
T Consensus       783 s~~~P~~~gKaDIVVSEL  800 (1072)
T PTZ00357        783 SLTLPADFGLCDLIVSEL  800 (1072)
T ss_pred             cccccccccccceehHhh
Confidence                     589999854

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.88  E-value=0.1  Score=40.85  Aligned_cols=56  Identities=16%  Similarity=0.312  Sum_probs=39.4

Q ss_pred             CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----CcceeecccC
Q 047897           32 DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVANIP  104 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~n~p  104 (232)
                      -++|||||=+......-. .--.|+.||+++.                .-.+.+.|+++.|.+     .||+|.+.+.
T Consensus        53 lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV  113 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLV  113 (219)
T ss_pred             ceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence            589999987655443322 2345999999772                245788999987653     6999888654

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.85  E-value=0.33  Score=34.05  Aligned_cols=69  Identities=26%  Similarity=0.365  Sum_probs=48.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      ++..+.+..   ...+|+|+|-|.=. .+..|.+++..|+++|+.+.       +..     ..+.++..|+++.+..  
T Consensus         4 ~a~~iAre~---~~gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~-----~g~~~v~DDitnP~~~iY   68 (129)
T COG1255           4 VAEYIAREN---ARGKVVEVGIGFFLDVAKRLAERGFDVLATDINEK-------TAP-----EGLRFVVDDITNPNISIY   68 (129)
T ss_pred             HHHHHHHHh---cCCcEEEEccchHHHHHHHHHHcCCcEEEEecccc-------cCc-----ccceEEEccCCCccHHHh
Confidence            344454443   23489999988765 45556668899999999886       221     3488999999988765  


Q ss_pred             -Ccceeec
Q 047897           95 -QFDLVVA  101 (232)
Q Consensus        95 -~~D~Vi~  101 (232)
                       ..|+|.+
T Consensus        69 ~~A~lIYS   76 (129)
T COG1255          69 EGADLIYS   76 (129)
T ss_pred             hCccceee
Confidence             5677876

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.72  E-value=0.33  Score=41.12  Aligned_cols=84  Identities=23%  Similarity=0.326  Sum_probs=63.0

Q ss_pred             CCEEEEEcCCccHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCc
Q 047897           31 DDTVLEIGPGTGNLTLKLLE-VSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPY  105 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~  105 (232)
                      ..+|+|.=+|+|.=+...+. .+. +|+.-|++|.+++..++|+..+.. .+..+++.|+..+-.   ..||+|=.+ ||
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDiD-PF  130 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDID-PF  130 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEecC-CC
Confidence            56899999999998887776 333 899999999999999999998732 467778888865432   256665544 67


Q ss_pred             ccchHHHHHHh
Q 047897          106 GISSPLVAKLV  116 (232)
Q Consensus       106 ~~~~~~l~~~~  116 (232)
                      +...|.+...+
T Consensus       131 GSPaPFlDaA~  141 (380)
T COG1867         131 GSPAPFLDAAL  141 (380)
T ss_pred             CCCchHHHHHH
Confidence            77777665444

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=93.45  E-value=0.3  Score=42.01  Aligned_cols=50  Identities=30%  Similarity=0.412  Sum_probs=40.5

Q ss_pred             HhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHh
Q 047897           24 RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA   73 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~   73 (232)
                      +.+++.++++||-|.+|-......+.+...+|++||+++.....++-+..
T Consensus        29 ~aL~i~~~d~vl~ItSaG~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   29 EALNIGPDDRVLTITSAGCNALDYLLAGPKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HHhCCCCCCeEEEEccCCchHHHHHhcCCceEEEEeCCHHHHHHHHHHHH
Confidence            45677899999999987777666677788999999999988877665554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=93.37  E-value=0.31  Score=41.12  Aligned_cols=73  Identities=23%  Similarity=0.382  Sum_probs=50.2

Q ss_pred             hcCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC-CCCCC--CCCccee
Q 047897           25 KSSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD-ALKTE--FPQFDLV   99 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D-~~~~~--~~~~D~V   99 (232)
                      ..+..+|+.|+=+|+| .|.++..+++ .+.+|+++|.+++-.+.|++.-..       .++... .....  .+.+|.|
T Consensus       161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~i  233 (339)
T COG1064         161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAI  233 (339)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEE
Confidence            3567789999888886 4467777777 789999999999998888877432       233322 11111  1138988


Q ss_pred             ecccC
Q 047897          100 VANIP  104 (232)
Q Consensus       100 i~n~p  104 (232)
                      +...|
T Consensus       234 i~tv~  238 (339)
T COG1064         234 IDTVG  238 (339)
T ss_pred             EECCC
Confidence            87655

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=93.29  E-value=0.19  Score=40.49  Aligned_cols=59  Identities=19%  Similarity=0.253  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      ..++..|.+.++..+..+++|+-||+|..+..+...+.+|+.-|+++..+...+..+..
T Consensus         6 ~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l~~   64 (260)
T PF02086_consen    6 RKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVLKN   64 (260)
T ss_dssp             GGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHHhc
Confidence            45677788877643678999999999999999877889999999999988887755543

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.42  E-value=1.5  Score=36.17  Aligned_cols=85  Identities=20%  Similarity=0.234  Sum_probs=63.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .|..||=-|.|.|.   ++..+++++++++..|++.+..+...+..+..|   ++....+|..+.+            .+
T Consensus        37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~G  113 (300)
T KOG1201|consen   37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEVG  113 (300)
T ss_pred             cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            57889999999884   777888889999999999998888888877664   5888999998753            23


Q ss_pred             Ccceeeccc-------CcccchHHHHHHhc
Q 047897           95 QFDLVVANI-------PYGISSPLVAKLVY  117 (232)
Q Consensus        95 ~~D~Vi~n~-------p~~~~~~~l~~~~~  117 (232)
                      ..|++|.|-       -++.+++.+.+.++
T Consensus       114 ~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~  143 (300)
T KOG1201|consen  114 DVDILVNNAGIVTGKKLLDCSDEEIQKTFD  143 (300)
T ss_pred             CceEEEeccccccCCCccCCCHHHHHHHHH
Confidence            567888762       23444555555443

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=92.28  E-value=0.072  Score=46.53  Aligned_cols=73  Identities=26%  Similarity=0.259  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---------CCCCcce
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---------EFPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---------~~~~~D~   98 (232)
                      .+..+|=+|.|.|.+...+..  ...+++++|+||.+++.+++++....- .+..+.-.|.+++         ....||+
T Consensus       295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv  373 (482)
T KOG2352|consen  295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV  373 (482)
T ss_pred             ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence            345789999999999988766  458999999999999999999854332 2466666676654         1126898


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      ++.++
T Consensus       374 l~~dv  378 (482)
T KOG2352|consen  374 LMVDV  378 (482)
T ss_pred             EEEEC
Confidence            88764

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=91.99  E-value=0.8  Score=39.44  Aligned_cols=81  Identities=15%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             CEEEEEcCCccHhHHHHHh----cC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeec
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVA  101 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~  101 (232)
                      .+||=|||  |..+...+.    .+ .+|+..|.+.+-++.+.....     ++++....|+.+.+.     ..+|+||+
T Consensus         2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~li~~~d~VIn   74 (389)
T COG1748           2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVALIKDFDLVIN   74 (389)
T ss_pred             CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHHHhcCCEEEE
Confidence            46888999  444444443    44 799999999887777665542     368899999988742     36799999


Q ss_pred             ccCcccchHHHHHHhcCC
Q 047897          102 NIPYGISSPLVAKLVYGT  119 (232)
Q Consensus       102 n~p~~~~~~~l~~~~~~~  119 (232)
                      -.|++....++...+...
T Consensus        75 ~~p~~~~~~i~ka~i~~g   92 (389)
T COG1748          75 AAPPFVDLTILKACIKTG   92 (389)
T ss_pred             eCCchhhHHHHHHHHHhC
Confidence            888888777765555433

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=91.95  E-value=0.7  Score=37.47  Aligned_cols=71  Identities=18%  Similarity=0.329  Sum_probs=54.9

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-C-CcceeecccCc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-P-QFDLVVANIPY  105 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~-~~D~Vi~n~p~  105 (232)
                      +.++....|+|+-+|+.|-.+.+++-.|++||--+ |.    +.+-..   +.++-...|..++.. . +.|..+|++.-
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~-ma----~sL~dt---g~v~h~r~DGfk~~P~r~~idWmVCDmVE  280 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGP-MA----QSLMDT---GQVTHLREDGFKFRPTRSNIDWMVCDMVE  280 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhcceEEEEeccch-hh----hhhhcc---cceeeeeccCcccccCCCCCceEEeehhc
Confidence            45788999999999999999999999999999543 32    222222   568889999988754 2 68999998743


Q ss_pred             c
Q 047897          106 G  106 (232)
Q Consensus       106 ~  106 (232)
                      .
T Consensus       281 k  281 (358)
T COG2933         281 K  281 (358)
T ss_pred             C
Confidence            3

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=91.64  E-value=0.16  Score=41.44  Aligned_cols=50  Identities=16%  Similarity=0.213  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhc--CC-CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHH
Q 047897           16 QRVLDSIVRKS--SI-NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMV   65 (232)
Q Consensus        16 ~~~~~~i~~~~--~~-~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~   65 (232)
                      -.++..+.+.+  .. -.+++|||+|||+|.....+...+ ..+...|.+.+.+
T Consensus        99 ~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl  152 (282)
T KOG2920|consen   99 VDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL  152 (282)
T ss_pred             HHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence            34555555443  21 357899999999999888877754 8888999888776

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=91.60  E-value=0.49  Score=35.03  Aligned_cols=53  Identities=23%  Similarity=0.294  Sum_probs=31.1

Q ss_pred             EEcCCcc--HhHHHHH--h--cCCeEEEEEcCHHHHHHHHHH--HhhcCCCccEEEEEcCC
Q 047897           36 EIGPGTG--NLTLKLL--E--VSKKVHAIEIDERMVEILNRR--AADSGFHDRLNVISKDA   88 (232)
Q Consensus        36 DiG~G~G--~~t~~l~--~--~~~~v~~vD~~~~~~~~a~~~--~~~~~~~~~~~~~~~D~   88 (232)
                      |||++.|  ..+..++  .  ...+|+++|.++..++.++++  +......+.+++.....
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~   61 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV   61 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence            8999999  6655543  2  468999999999999999999  44332212355554433

; PDB: 2PY6_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=91.53  E-value=0.6  Score=40.98  Aligned_cols=71  Identities=23%  Similarity=0.454  Sum_probs=54.6

Q ss_pred             CCCC-EEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeec
Q 047897           29 NPDD-TVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVA  101 (232)
Q Consensus        29 ~~~~-~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~  101 (232)
                      .+.+ ++|.+|||.-.++..+.+.+ ..++.+|+|+-.++.+........  +-..+...|+....+  ++||+|+-
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~~--~~~~~~~~d~~~l~fedESFdiVId  120 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKER--PEMQMVEMDMDQLVFEDESFDIVID  120 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccCC--cceEEEEecchhccCCCcceeEEEe
Confidence            3455 89999999999999998854 689999999998888776654222  347778888877655  48888875

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.96  E-value=0.7  Score=38.56  Aligned_cols=48  Identities=21%  Similarity=0.351  Sum_probs=39.4

Q ss_pred             HHhcCCCCCCEEEEEcCCc-cHhHHHHHh--cCCeEEEEEcCHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPGT-GNLTLKLLE--VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~-G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ....+.+.|.+||=+|+|+ |.++...++  ...+|+.+|+++..++.|++
T Consensus       162 cr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  162 CRRAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             hhhcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            3456778899999999997 555655666  46899999999999999998

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=90.86  E-value=0.7  Score=35.65  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=52.0

Q ss_pred             CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh----cC--CeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE----VS--KKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~----~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      .|...+.++.-+-.+-+.+=-.+.+.|+|+|.--|+-+...++    .+  .+|+++|+|-.-++.+....      +++
T Consensus        47 mG~p~~k~p~D~~~yQellw~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~------p~i  120 (237)
T COG3510          47 MGIPCIKSPSDMWNYQELLWELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREV------PDI  120 (237)
T ss_pred             ecccccCCHHHHHHHHHHHHhcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcC------CCe
Confidence            3555555555444444443223566899999999987777766    23  78999999865543322221      689


Q ss_pred             EEEEcCCCCCC
Q 047897           82 NVISKDALKTE   92 (232)
Q Consensus        82 ~~~~~D~~~~~   92 (232)
                      .+++|+..+..
T Consensus       121 ~f~egss~dpa  131 (237)
T COG3510         121 LFIEGSSTDPA  131 (237)
T ss_pred             EEEeCCCCCHH
Confidence            99999987763

>PRK05867 short chain dehydrogenase; Provisional

Probab=90.69  E-value=2  Score=34.30  Aligned_cols=73  Identities=21%  Similarity=0.264  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++.++...+.+...+  .++.++.+|+.+..            ++
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46788988876552   455555578999999999877776666655444  46888899987642            13


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.++.|..
T Consensus        86 ~id~lv~~ag   95 (253)
T PRK05867         86 GIDIAVCNAG   95 (253)
T ss_pred             CCCEEEECCC
Confidence            5788887753

>PRK07454 short chain dehydrogenase; Provisional

Probab=90.65  E-value=2.8  Score=33.08  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=47.4

Q ss_pred             CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|+ +|.++..++    +.+.+|++++.++.-.+...+.....+  .++.++.+|+.+..            .
T Consensus         5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   81 (241)
T PRK07454          5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQF   81 (241)
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3457788885 555544444    478899999998876555544444332  46889999998753            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ...|.++.+.-
T Consensus        82 ~~id~lv~~ag   92 (241)
T PRK07454         82 GCPDVLINNAG   92 (241)
T ss_pred             CCCCEEEECCC
Confidence            24688887653

>PRK07063 short chain dehydrogenase; Provisional

Probab=90.63  E-value=2.6  Score=33.76  Aligned_cols=74  Identities=18%  Similarity=0.238  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++..+...+.+...+...++.++.+|+.+..            ++
T Consensus         6 ~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   85 (260)
T PRK07063          6 AGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFG   85 (260)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35678888875442   4444555789999999988777666666544212246889999987652            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.+|.|.
T Consensus        86 ~id~li~~a   94 (260)
T PRK07063         86 PLDVLVNNA   94 (260)
T ss_pred             CCcEEEECC
Confidence            578888764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=90.32  E-value=1.1  Score=41.19  Aligned_cols=63  Identities=17%  Similarity=0.219  Sum_probs=43.4

Q ss_pred             EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecc
Q 047897           33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVAN  102 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n  102 (232)
                      .|+=+|  .|.++..+++    .+.+++.+|.|++.++.+++    .    ...++.||+.+.+      .++.|.+++.
T Consensus       402 ~vII~G--~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~~  471 (601)
T PRK03659        402 QVIIVG--FGRFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVIT  471 (601)
T ss_pred             CEEEec--CchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEEE
Confidence            455455  5555555544    67899999999999887764    2    2668999998753      3367777775


Q ss_pred             cCc
Q 047897          103 IPY  105 (232)
Q Consensus       103 ~p~  105 (232)
                      .+-
T Consensus       472 ~~d  474 (601)
T PRK03659        472 CNE  474 (601)
T ss_pred             eCC
Confidence            543

>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted

Probab=89.81  E-value=0.36  Score=38.83  Aligned_cols=74  Identities=20%  Similarity=0.326  Sum_probs=46.8

Q ss_pred             EEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----C-CCCcceeecccCcccc
Q 047897           35 LEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----E-FPQFDLVVANIPYGIS  108 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~-~~~~D~Vi~n~p~~~~  108 (232)
                      +..-+|+-.++..+++...+.+.+|+.+.-.+.+++++...   .++.+.+.|..+.     | .+.=-+|+.++||-..
T Consensus        62 l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~~---~~v~v~~~DG~~~l~allPP~~rRglVLIDPpYE~~  138 (245)
T PF04378_consen   62 LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRRD---RRVRVHHRDGYEGLKALLPPPERRGLVLIDPPYEQK  138 (245)
T ss_dssp             --EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--TT---S-EEEE-S-HHHHHHHH-S-TTS-EEEEE-----ST
T ss_pred             cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhccC---CccEEEeCchhhhhhhhCCCCCCCeEEEECCCCCCc
Confidence            78999999999999998899999999999999999888653   5899999998763     2 2233589999999988


Q ss_pred             hHH
Q 047897          109 SPL  111 (232)
Q Consensus       109 ~~~  111 (232)
                      ++.
T Consensus       139 ~dy  141 (245)
T PF04378_consen  139 DDY  141 (245)
T ss_dssp             THH
T ss_pred             hHH
Confidence            653

; PDB: 2OO3_A.

>PRK05866 short chain dehydrogenase; Provisional

Probab=89.71  E-value=3  Score=34.38  Aligned_cols=71  Identities=15%  Similarity=0.261  Sum_probs=47.9

Q ss_pred             CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897           31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ   95 (232)
Q Consensus        31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   95 (232)
                      +.++|=.|++.|.   ++..+++.+.+|++++.+++.++...+.....+  .++.++.+|+.+..            .+.
T Consensus        40 ~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         40 GKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            4678878865442   334444578999999999877766655554433  35788999988743            235


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|.++.|.
T Consensus       118 id~li~~A  125 (293)
T PRK05866        118 VDILINNA  125 (293)
T ss_pred             CCEEEECC
Confidence            78888764

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.68  E-value=1.6  Score=39.67  Aligned_cols=64  Identities=22%  Similarity=0.269  Sum_probs=43.5

Q ss_pred             CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeec
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVA  101 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~  101 (232)
                      +.++=+|||  ..+..+++    .+.+++.+|.|++.++.+++.        ....+.||+.+..      .++.|.++.
T Consensus       418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv  487 (558)
T PRK10669        418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLL  487 (558)
T ss_pred             CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence            345555555  45555544    578999999999988877642        3778999998752      336787766


Q ss_pred             ccCc
Q 047897          102 NIPY  105 (232)
Q Consensus       102 n~p~  105 (232)
                      ..+-
T Consensus       488 ~~~~  491 (558)
T PRK10669        488 TIPN  491 (558)
T ss_pred             EcCC
Confidence            5543

>PRK07814 short chain dehydrogenase; Provisional

Probab=89.52  E-value=3  Score=33.56  Aligned_cols=71  Identities=23%  Similarity=0.357  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      ++.++|=.|+ +|.++..+    ++.+.+|++++.+++-.+.+.+.....+  .++.++.+|..+..            .
T Consensus         9 ~~~~vlItGa-sggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (263)
T PRK07814          9 DDQVAVVTGA-GRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF   85 (263)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4667888885 45455444    4478999999998876665555554333  46888999987653            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +.+|.|+.+.
T Consensus        86 ~~id~vi~~A   95 (263)
T PRK07814         86 GRLDIVVNNV   95 (263)
T ss_pred             CCCCEEEECC
Confidence            2568888764

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=89.28  E-value=1.3  Score=38.87  Aligned_cols=82  Identities=20%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           15 NQRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        15 ~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      ++.-++.+.+.+.-  ....+++=+|+  |.++..+++    .+..|+.+|.|++.++.+++..      .++.++.||+
T Consensus       213 ~~~~l~~~~~~~~~~~~~~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~  284 (453)
T PRK09496        213 AREHIRAVMSEFGRLEKPVKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDG  284 (453)
T ss_pred             CHHHHHHHHHHhCccCCCCCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCC
Confidence            34445555544431  22456777776  555555555    5789999999999888776653      3467899999


Q ss_pred             CCC------CCCCcceeecccC
Q 047897           89 LKT------EFPQFDLVVANIP  104 (232)
Q Consensus        89 ~~~------~~~~~D~Vi~n~p  104 (232)
                      .+.      .....|.|++-.+
T Consensus       285 ~~~~~L~~~~~~~a~~vi~~~~  306 (453)
T PRK09496        285 TDQELLEEEGIDEADAFIALTN  306 (453)
T ss_pred             CCHHHHHhcCCccCCEEEECCC
Confidence            754      2336777776544

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=89.20  E-value=0.68  Score=39.82  Aligned_cols=20  Identities=20%  Similarity=0.481  Sum_probs=17.4

Q ss_pred             CCEEEEEcCCccHhHHHHHh
Q 047897           31 DDTVLEIGPGTGNLTLKLLE   50 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~   50 (232)
                      .-.|+|+|||+|..|..+..
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs   83 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIID   83 (386)
T ss_pred             ceeEEEecCCCCccHHHHHH
Confidence            45799999999999988875

>PRK07035 short chain dehydrogenase; Provisional

Probab=89.01  E-value=4  Score=32.43  Aligned_cols=73  Identities=14%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.++.-.+...+.+...+  .++.++..|..+..            .+
T Consensus         7 ~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK07035          7 TGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHG   84 (252)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35678888877552   444555578899999998776666555554433  35778888887652            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      +.|.++.+..
T Consensus        85 ~id~li~~ag   94 (252)
T PRK07035         85 RLDILVNNAA   94 (252)
T ss_pred             CCCEEEECCC
Confidence            4788886653

>PRK07062 short chain dehydrogenase; Provisional

Probab=88.89  E-value=4  Score=32.74  Aligned_cols=75  Identities=23%  Similarity=0.193  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+..+|=.|++.|.   ++..+++.+.+|++++.+++-++.+.+.+.......++.++.+|+.+..            +.
T Consensus         7 ~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T PRK07062          7 EGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            46688888876552   4455555789999999998766665555543321136778889987752            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.++.|.-
T Consensus        87 ~id~li~~Ag   96 (265)
T PRK07062         87 GVDMLVNNAG   96 (265)
T ss_pred             CCCEEEECCC
Confidence            5688887753

>PRK05876 short chain dehydrogenase; Provisional

Probab=88.64  E-value=4.1  Score=33.13  Aligned_cols=73  Identities=15%  Similarity=0.163  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+.+...+  .++.++.+|+.+..            .+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            45678877765442   444445578899999998876665555554433  35888999987642            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|.-
T Consensus        83 ~id~li~nAg   92 (275)
T PRK05876         83 HVDVVFSNAG   92 (275)
T ss_pred             CCCEEEECCC
Confidence            4688887753

>PRK07576 short chain dehydrogenase; Provisional

Probab=88.51  E-value=3.9  Score=32.96  Aligned_cols=71  Identities=17%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      ++.++|=.|. +|.++..    +++.+.+|++++.+++-.+...+.+...+  .++.++.+|+.+..            .
T Consensus         8 ~~k~ilItGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~   84 (264)
T PRK07576          8 AGKNVVVVGG-TSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF   84 (264)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4567887775 4444444    44478899999998876655544444333  35778899987642            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|.+|.|.
T Consensus        85 ~~iD~vi~~a   94 (264)
T PRK07576         85 GPIDVLVSGA   94 (264)
T ss_pred             CCCCEEEECC
Confidence            2468888764

>PRK08251 short chain dehydrogenase; Provisional

Probab=88.44  E-value=4.5  Score=31.98  Aligned_cols=71  Identities=14%  Similarity=0.133  Sum_probs=46.7

Q ss_pred             CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ   95 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   95 (232)
                      .++|=.|+ +|.++..+++    .+.+|+.++.++...+.....+.......++.++.+|+.+..            ++.
T Consensus         3 k~vlItGa-s~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          3 QKILITGA-SSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CEEEEECC-CCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            46777774 5555555554    678999999988776665555443211246889999998752            124


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|.++.|.
T Consensus        82 id~vi~~a   89 (248)
T PRK08251         82 LDRVIVNA   89 (248)
T ss_pred             CCEEEECC
Confidence            68888764

>PRK07890 short chain dehydrogenase; Provisional

Probab=88.37  E-value=3.8  Score=32.63  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.++.-.+.+.+.+...+  .++.++..|+.+..            ++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG   81 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            45678877764442   444455578999999998876666655554433  46889999987642            13


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.|+.|.
T Consensus        82 ~~d~vi~~a   90 (258)
T PRK07890         82 RVDALVNNA   90 (258)
T ss_pred             CccEEEECC
Confidence            568888765

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=88.33  E-value=3.6  Score=32.60  Aligned_cols=68  Identities=24%  Similarity=0.341  Sum_probs=45.5

Q ss_pred             EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897           33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF   96 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   96 (232)
                      ++|=.| |+|.++..+++    .+.+|++++.+++..+.+.......+  .++.++.+|+.+..            ....
T Consensus         3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   79 (255)
T TIGR01963         3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL   79 (255)
T ss_pred             EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence            456566 55666666554    67899999998876666555544333  46889999998753            1246


Q ss_pred             ceeeccc
Q 047897           97 DLVVANI  103 (232)
Q Consensus        97 D~Vi~n~  103 (232)
                      |.|+.+.
T Consensus        80 d~vi~~a   86 (255)
T TIGR01963        80 DILVNNA   86 (255)
T ss_pred             CEEEECC
Confidence            8887754

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=88.24  E-value=3.5  Score=32.77  Aligned_cols=66  Identities=27%  Similarity=0.285  Sum_probs=42.3

Q ss_pred             EEEEEcCCcc--HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecccC
Q 047897           33 TVLEIGPGTG--NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANIP  104 (232)
Q Consensus        33 ~vLDiG~G~G--~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~p  104 (232)
                      +++=+|||.=  .++..|.+.+..|+++|.|++.++.....-      .....+++|+.+..      ...+|.+++...
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~------~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~   75 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADE------LDTHVVIGDATDEDVLEEAGIDDADAVVAATG   75 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhh------cceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence            3555666642  233444447889999999998876632211      23788999998753      347787776443

>PRK05854 short chain dehydrogenase; Provisional

Probab=88.23  E-value=4.8  Score=33.51  Aligned_cols=74  Identities=14%  Similarity=0.068  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|+.+..+.+-.+.+.+.+....-..++.++.+|+.+..            .+
T Consensus        13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~   92 (313)
T PRK05854         13 SGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR   92 (313)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            46678877876553   4444555789999999887766555554433221136889999997753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        93 ~iD~li~nA  101 (313)
T PRK05854         93 PIHLLINNA  101 (313)
T ss_pred             CccEEEECC
Confidence            578888774

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=88.06  E-value=0.68  Score=35.83  Aligned_cols=83  Identities=27%  Similarity=0.323  Sum_probs=48.8

Q ss_pred             HHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHH------HHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           23 VRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMV------EILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~------~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      +...+++++.+|+|+-+|.|.+|..+..   ....|+++-..+...      ...+....+... .|.+.+-.+...+..
T Consensus        41 L~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~-aN~e~~~~~~~A~~~  119 (238)
T COG4798          41 LAFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVY-ANVEVIGKPLVALGA  119 (238)
T ss_pred             eEEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhh-hhhhhhCCcccccCC
Confidence            3345678999999999999999999987   335777775443211      111111111122 456666666555543


Q ss_pred             C-CcceeecccCcc
Q 047897           94 P-QFDLVVANIPYG  106 (232)
Q Consensus        94 ~-~~D~Vi~n~p~~  106 (232)
                      + ..|++..+.-|+
T Consensus       120 pq~~d~~~~~~~yh  133 (238)
T COG4798         120 PQKLDLVPTAQNYH  133 (238)
T ss_pred             CCcccccccchhhh
Confidence            2 556666654443

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=87.92  E-value=3.2  Score=34.49  Aligned_cols=73  Identities=16%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceee
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVV  100 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi  100 (232)
                      .+.+||=.| |+|.++..+++    .+.+|+++..++...+.........+...+++++.+|+.+...     ...|.|+
T Consensus         4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   82 (325)
T PLN02989          4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF   82 (325)
T ss_pred             CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence            456788777 56776666655    6788988877765433322222211222468899999987642     2468887


Q ss_pred             ccc
Q 047897          101 ANI  103 (232)
Q Consensus       101 ~n~  103 (232)
                      .+.
T Consensus        83 h~A   85 (325)
T PLN02989         83 HTA   85 (325)
T ss_pred             EeC
Confidence            654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=87.83  E-value=5.3  Score=31.63  Aligned_cols=73  Identities=19%  Similarity=0.207  Sum_probs=47.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           29 NPDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      .++.++|=.|+ +|.++..++    +.+.+|++++.+++-.+...+.+...+. .++.++.+|+...+            
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGG-PQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCC-CCceEEEecccCCCHHHHHHHHHHHH
Confidence            36778888885 555555444    4678999999998776666555544332 35778888875321            


Q ss_pred             --CCCcceeeccc
Q 047897           93 --FPQFDLVVANI  103 (232)
Q Consensus        93 --~~~~D~Vi~n~  103 (232)
                        .+..|.||.|.
T Consensus        88 ~~~~~id~vi~~A  100 (247)
T PRK08945         88 EQFGRLDGVLHNA  100 (247)
T ss_pred             HHhCCCCEEEECC
Confidence              12578888764

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=87.80  E-value=5  Score=32.25  Aligned_cols=73  Identities=14%  Similarity=0.127  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+.....+  .++.++.+|+.+..            ..
T Consensus         9 ~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   86 (265)
T PRK07097          9 KGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVG   86 (265)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            45678888876653   555566678899999998877766666665433  46888999997652            13


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.++.|..
T Consensus        87 ~id~li~~ag   96 (265)
T PRK07097         87 VIDILVNNAG   96 (265)
T ss_pred             CCCEEEECCC
Confidence            4788887754

>PRK07478 short chain dehydrogenase; Provisional

Probab=87.77  E-value=4.8  Score=32.04  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=48.4

Q ss_pred             CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897           31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ   95 (232)
Q Consensus        31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   95 (232)
                      +.++|=.|++.|.   ++..+++.+.+|+.++.+++-.+.+.+.+...+  .++.++.+|+.+..            .+.
T Consensus         6 ~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (254)
T PRK07478          6 GKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFGG   83 (254)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            5577877765442   444555578899999998877666655555444  46888999987652            125


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      .|.+|.|..
T Consensus        84 id~li~~ag   92 (254)
T PRK07478         84 LDIAFNNAG   92 (254)
T ss_pred             CCEEEECCC
Confidence            788887653

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=87.75  E-value=0.8  Score=37.73  Aligned_cols=75  Identities=19%  Similarity=0.380  Sum_probs=59.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC----CCCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT----EFPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~----~~~~~D~V   99 (232)
                      ...++||=||-|.|...+..+.  ....+.-+|+|...++..++.+...  |+ .+++.+.-||...+    ...+||+|
T Consensus       120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi  199 (337)
T KOG1562|consen  120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI  199 (337)
T ss_pred             CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence            3567899999999999988877  3468999999999999999888653  22 26899999998664    23489999


Q ss_pred             eccc
Q 047897          100 VANI  103 (232)
Q Consensus       100 i~n~  103 (232)
                      +.+.
T Consensus       200 i~ds  203 (337)
T KOG1562|consen  200 ITDS  203 (337)
T ss_pred             EEec
Confidence            9764

>PRK07774 short chain dehydrogenase; Provisional

Probab=87.33  E-value=4.9  Score=31.81  Aligned_cols=73  Identities=15%  Similarity=0.220  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      .+.++|=.| |+|.++..++    +.+.+|++++.++.-.+.........+  .++.++.+|..+...            
T Consensus         5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   81 (250)
T PRK07774          5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSAF   81 (250)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            356778777 4455555554    478899999998765555444443322  357788899887531            


Q ss_pred             CCcceeecccCc
Q 047897           94 PQFDLVVANIPY  105 (232)
Q Consensus        94 ~~~D~Vi~n~p~  105 (232)
                      +..|.||.+..+
T Consensus        82 ~~id~vi~~ag~   93 (250)
T PRK07774         82 GGIDYLVNNAAI   93 (250)
T ss_pred             CCCCEEEECCCC
Confidence            257988887543

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=87.16  E-value=2.3  Score=36.14  Aligned_cols=46  Identities=22%  Similarity=0.415  Sum_probs=36.0

Q ss_pred             CCCCCCEEEEEcCCc-cHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHH
Q 047897           27 SINPDDTVLEIGPGT-GNLTLKLLE--VSKKVHAIEIDERMVEILNRRA   72 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~-G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~   72 (232)
                      ...++++|+=+|||+ |.++..+++  ...+|+++|.+++-++.|++..
T Consensus       165 ~~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~  213 (350)
T COG1063         165 AVRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG  213 (350)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC
Confidence            334555999999998 555566666  3489999999999999998865

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=87.15  E-value=2.1  Score=36.74  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=38.1

Q ss_pred             hcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           25 KSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      ...+.++.+||..|||. |..+..+++ .+. ++++++.+++..+.+++.
T Consensus       179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         179 LAEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             hccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            44566788999999988 888888887 454 699999999988888775

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK08589 short chain dehydrogenase; Validated

Probab=87.12  E-value=5.3  Score=32.31  Aligned_cols=72  Identities=19%  Similarity=0.275  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.++. .+...+.+...+  .++.++.+|+.+..            ++
T Consensus         5 ~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~-~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   81 (272)
T PRK08589          5 ENKVAVITGASTGIGQASAIALAQEGAYVLAVDIAEA-VSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFG   81 (272)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHH-HHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            45678878876552   44455557899999999843 333333343333  46888999987652            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.+|.|.-
T Consensus        82 ~id~li~~Ag   91 (272)
T PRK08589         82 RVDVLFNNAG   91 (272)
T ss_pred             CcCEEEECCC
Confidence            4688888753

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=87.08  E-value=0.69  Score=36.41  Aligned_cols=57  Identities=18%  Similarity=0.197  Sum_probs=49.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHH
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRA   72 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~   72 (232)
                      |-+++..++.+.+.++...+|.--|.|..|..+++  ...+++++|.||-+.+.|+-..
T Consensus        29 PVm~devl~~lspv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s   87 (303)
T KOG2782|consen   29 PVMLDEVLDILSPVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS   87 (303)
T ss_pred             ceehhhHHHHcCCCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence            66788899999888999999999999999999998  4468899999998877766555

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=86.86  E-value=5.9  Score=32.04  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++..+...+.+...+  .++.++.+|..+..            ++
T Consensus         9 ~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (278)
T PRK08277          9 KGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFG   86 (278)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35677777765442   444455578899999998776655555554433  46888999987652            13


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.+|.|..
T Consensus        87 ~id~li~~ag   96 (278)
T PRK08277         87 PCDILINGAG   96 (278)
T ss_pred             CCCEEEECCC
Confidence            5788887643

>PRK07109 short chain dehydrogenase; Provisional

Probab=86.83  E-value=5.7  Score=33.45  Aligned_cols=73  Identities=19%  Similarity=0.183  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-++...+.+...+  .++.++.+|+.+..            +.
T Consensus         7 ~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          7 GRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            35577878864442   334445578899999999887776666665544  46888999987752            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.+|.|.-
T Consensus        85 ~iD~lInnAg   94 (334)
T PRK07109         85 PIDTWVNNAM   94 (334)
T ss_pred             CCCEEEECCC
Confidence            5788887653

>PRK08303 short chain dehydrogenase; Provisional

Probab=86.62  E-value=5.1  Score=33.30  Aligned_cols=72  Identities=19%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCH----------HHHHHHHHHHhhcCCCccEEEEEcCCCCCC----
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDE----------RMVEILNRRAADSGFHDRLNVISKDALKTE----   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~----------~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----   92 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+.          +-++.+.+.+...+  .++.++.+|+.+..    
T Consensus         7 ~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~   84 (305)
T PRK08303          7 RGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRA   84 (305)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHH
Confidence            46788999976662   4445555788999998763          23333334444333  35778899988752    


Q ss_pred             --------CCCcceeeccc
Q 047897           93 --------FPQFDLVVANI  103 (232)
Q Consensus        93 --------~~~~D~Vi~n~  103 (232)
                              ++..|++|.|.
T Consensus        85 ~~~~~~~~~g~iDilVnnA  103 (305)
T PRK08303         85 LVERIDREQGRLDILVNDI  103 (305)
T ss_pred             HHHHHHHHcCCccEEEECC
Confidence                    23578888876

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=86.54  E-value=4.1  Score=37.06  Aligned_cols=79  Identities=18%  Similarity=0.251  Sum_probs=50.0

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhc-----CC--CccEEEEEcCCCCCC-
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADS-----GF--HDRLNVISKDALKTE-   92 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~-----~~--~~~~~~~~~D~~~~~-   92 (232)
                      ..+...+.+||=.|+ +|.++..+++    .+.+|+++..+.+-.+...+.+...     |.  ..++.++.+|+.+.. 
T Consensus        74 ~~~~~~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~es  152 (576)
T PLN03209         74 ELDTKDEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQ  152 (576)
T ss_pred             ccccCCCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHH
Confidence            334446777777775 4555555544    6889999998887665444333221     11  135889999998753 


Q ss_pred             ----CCCcceeecccC
Q 047897           93 ----FPQFDLVVANIP  104 (232)
Q Consensus        93 ----~~~~D~Vi~n~p  104 (232)
                          +...|+||++.-
T Consensus       153 I~~aLggiDiVVn~AG  168 (576)
T PLN03209        153 IGPALGNASVVICCIG  168 (576)
T ss_pred             HHHHhcCCCEEEEccc
Confidence                236788887753

>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]

Probab=86.36  E-value=2.5  Score=34.02  Aligned_cols=73  Identities=21%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             EEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----CC-CCcceeecccCcccc
Q 047897           35 LEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----EF-PQFDLVVANIPYGIS  108 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~~-~~~D~Vi~n~p~~~~  108 (232)
                      |.--||+-.++..+++...++.++|..+.=...++.++..   ..++.+..+|....     |. +.=-+|+.++||...
T Consensus        93 l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~~---d~~vrv~~~DG~~~l~a~LPP~erRglVLIDPPfE~~  169 (279)
T COG2961          93 LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFAG---DRRVRVLRGDGFLALKAHLPPKERRGLVLIDPPFELK  169 (279)
T ss_pred             cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhCC---CcceEEEecCcHHHHhhhCCCCCcceEEEeCCCcccc
Confidence            8999999999999999889999999999999999999973   26899999998653     22 123579999999877


Q ss_pred             hH
Q 047897          109 SP  110 (232)
Q Consensus       109 ~~  110 (232)
                      .+
T Consensus       170 ~e  171 (279)
T COG2961         170 DE  171 (279)
T ss_pred             cH
Confidence            54

>PRK07791 short chain dehydrogenase; Provisional

Probab=86.32  E-value=7  Score=31.98  Aligned_cols=72  Identities=18%  Similarity=0.240  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCH---------HHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDE---------RMVEILNRRAADSGFHDRLNVISKDALKTE-----   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~---------~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----   92 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+.         +.++.+.+.+...+  .++.++.+|+.+..     
T Consensus         5 ~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~   82 (286)
T PRK07791          5 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAANL   82 (286)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHHH
Confidence            56788888877663   4455556788999988764         43444334443333  45778889987742     


Q ss_pred             -------CCCcceeeccc
Q 047897           93 -------FPQFDLVVANI  103 (232)
Q Consensus        93 -------~~~~D~Vi~n~  103 (232)
                             ++..|.+|.|.
T Consensus        83 ~~~~~~~~g~id~lv~nA  100 (286)
T PRK07791         83 VDAAVETFGGLDVLVNNA  100 (286)
T ss_pred             HHHHHHhcCCCCEEEECC
Confidence                   23578888774

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=86.31  E-value=2.7  Score=38.80  Aligned_cols=64  Identities=20%  Similarity=0.280  Sum_probs=43.4

Q ss_pred             CEEEEEcCCccH--hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeeccc
Q 047897           32 DTVLEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANI  103 (232)
Q Consensus        32 ~~vLDiG~G~G~--~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~  103 (232)
                      ++|+=+|||.=+  ++..+.+.+.+++.+|.|++.++.+++.        ...++.||+.+.+      .++.|.+++-.
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~~  472 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINAI  472 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEEe
Confidence            467777776533  2222333678999999999999887652        2668999998763      23667777644

>PRK07677 short chain dehydrogenase; Provisional

Probab=86.19  E-value=5.8  Score=31.57  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             CEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897           32 DTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF   96 (232)
Q Consensus        32 ~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   96 (232)
                      .++|=.|++.|.   ++..+++.+.+|++++.++...+.+.+.+...+  .++.++.+|..+..            ++..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            467777775542   444455578899999998876666665554433  46889999987642            1356


Q ss_pred             ceeeccc
Q 047897           97 DLVVANI  103 (232)
Q Consensus        97 D~Vi~n~  103 (232)
                      |.+|.|.
T Consensus        80 d~lI~~a   86 (252)
T PRK07677         80 DALINNA   86 (252)
T ss_pred             cEEEECC
Confidence            8888764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=86.15  E-value=6.3  Score=31.38  Aligned_cols=72  Identities=17%  Similarity=0.219  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      ++.++|=.|++ |.++..    +++.+.+|+.++.+++.++...+.+...+  .++.++.+|+.+..            .
T Consensus        10 ~~k~ilItGas-~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGSA-RGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            46678878854 444444    44478999999999876665555554444  46889999987642            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      +..|.++.|.-
T Consensus        87 ~~id~vi~~ag   97 (256)
T PRK06124         87 GRLDILVNNVG   97 (256)
T ss_pred             CCCCEEEECCC
Confidence            24688887643

>PRK08862 short chain dehydrogenase; Provisional

Probab=86.12  E-value=5.7  Score=31.35  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+..+|=.|++.|.   ++..+++.+.+|+.++.+++.++.+.+.....+  .++..+..|..+..            ++
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            35688888888874   666666689999999999887776666555444  34667777876542            23


Q ss_pred             -Ccceeeccc
Q 047897           95 -QFDLVVANI  103 (232)
Q Consensus        95 -~~D~Vi~n~  103 (232)
                       ..|+++.|.
T Consensus        82 ~~iD~li~na   91 (227)
T PRK08862         82 RAPDVLVNNW   91 (227)
T ss_pred             CCCCEEEECC
Confidence             578888875

>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]

Probab=85.86  E-value=2.9  Score=34.57  Aligned_cols=49  Identities=12%  Similarity=0.292  Sum_probs=39.4

Q ss_pred             cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897           26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        26 ~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      +.+..+.+|.-||+|--.....+.+...+|.+||+++..+..-+-++..
T Consensus        59 m~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lklaA  107 (414)
T COG5379          59 MQLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLAA  107 (414)
T ss_pred             HhcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHHH
Confidence            3445788999999998878878888889999999999988776665543

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=85.61  E-value=0.4  Score=42.12  Aligned_cols=85  Identities=26%  Similarity=0.354  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------CCcceee
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------PQFDLVV  100 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------~~~D~Vi  100 (232)
                      ++-+|||.=|++|.-+...+.   ...+|++-|.++..++..++|.+.++.++.++..++|+..+-.      ..||+|=
T Consensus       109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID  188 (525)
T KOG1253|consen  109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID  188 (525)
T ss_pred             CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence            456899999999998888877   3578999999999999999999988877778888999865421      3688776


Q ss_pred             cccCcccchHHHHHH
Q 047897          101 ANIPYGISSPLVAKL  115 (232)
Q Consensus       101 ~n~p~~~~~~~l~~~  115 (232)
                      .+ ||+..++++...
T Consensus       189 LD-PyGs~s~FLDsA  202 (525)
T KOG1253|consen  189 LD-PYGSPSPFLDSA  202 (525)
T ss_pred             cC-CCCCccHHHHHH
Confidence            65 788877776443

>PRK06197 short chain dehydrogenase; Provisional

Probab=85.54  E-value=7.6  Score=32.02  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.+||=.|+ +|.++..+    ++.+.+|+.+..+++-.+.+.+.+.......++.++.+|+.+..            .
T Consensus        15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~   93 (306)
T PRK06197         15 SGRVAVVTGA-NTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAY   93 (306)
T ss_pred             CCCEEEEcCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhC
Confidence            4667886675 44444444    44788999999887666554444432211146889999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|.+|.|.
T Consensus        94 ~~iD~li~nA  103 (306)
T PRK06197         94 PRIDLLINNA  103 (306)
T ss_pred             CCCCEEEECC
Confidence            2578888775

>PRK06139 short chain dehydrogenase; Provisional

Probab=85.46  E-value=6.6  Score=33.07  Aligned_cols=72  Identities=15%  Similarity=0.217  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++.++...+.+...+  .++.++.+|+.+..            ..
T Consensus         6 ~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (330)
T PRK06139          6 HGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGG   83 (330)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            45678877775442   444455578999999999887776666665544  45778888987642            13


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.+|.|.
T Consensus        84 ~iD~lVnnA   92 (330)
T PRK06139         84 RIDVWVNNV   92 (330)
T ss_pred             CCCEEEECC
Confidence            578888875

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=85.28  E-value=5.9  Score=31.61  Aligned_cols=70  Identities=14%  Similarity=0.321  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.+..  +.+.+.....+  .++.++.+|+.+..            ++
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   82 (251)
T PRK12481          7 NGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMG   82 (251)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            46788988876653   44455557899998876542  22333333333  46888999997753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.++.|.
T Consensus        83 ~iD~lv~~a   91 (251)
T PRK12481         83 HIDILINNA   91 (251)
T ss_pred             CCCEEEECC
Confidence            578888774

>PRK08267 short chain dehydrogenase; Provisional

Probab=85.19  E-value=5.7  Score=31.73  Aligned_cols=68  Identities=16%  Similarity=0.172  Sum_probs=44.9

Q ss_pred             EEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-------------CCCc
Q 047897           33 TVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-------------FPQF   96 (232)
Q Consensus        33 ~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-------------~~~~   96 (232)
                      ++|=.|++.|   .++..+++.+.+|++++.+++-++.+.+...  +  .++.++.+|+.+..             ..++
T Consensus         3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~--~--~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~i   78 (260)
T PRK08267          3 SIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG--A--GNAWTGALDVTDRAAWDAALADFAAATGGRL   78 (260)
T ss_pred             EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc--C--CceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            5677776543   1444455578899999998876665544432  1  46889999998742             2246


Q ss_pred             ceeecccC
Q 047897           97 DLVVANIP  104 (232)
Q Consensus        97 D~Vi~n~p  104 (232)
                      |.|+.|.-
T Consensus        79 d~vi~~ag   86 (260)
T PRK08267         79 DVLFNNAG   86 (260)
T ss_pred             CEEEECCC
Confidence            88887653

>PRK12939 short chain dehydrogenase; Provisional

Probab=85.06  E-value=7  Score=30.83  Aligned_cols=71  Identities=18%  Similarity=0.134  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      ++.++|=.|+ +|.++..+++    .+.+|++++.+++-.+...+.+...+  .++.++.+|+.+...            
T Consensus         6 ~~~~vlItGa-~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (250)
T PRK12939          6 AGKRALVTGA-ARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL   82 (250)
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4567886664 5555555544    68899999988876665555544333  468899999976431            


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|.|+.+.
T Consensus        83 ~~id~vi~~a   92 (250)
T PRK12939         83 GGLDGLVNNA   92 (250)
T ss_pred             CCCCEEEECC
Confidence            3568888764

>PRK06949 short chain dehydrogenase; Provisional

Probab=84.95  E-value=7.4  Score=30.92  Aligned_cols=72  Identities=18%  Similarity=0.210  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.| |+|.++..+++    .+.+|++++.+++.++.....+...+  .++.++.+|+.+..            .
T Consensus         8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   84 (258)
T PRK06949          8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEA   84 (258)
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            467788888 45555555444    67899999999887766666554333  46888999987642            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ...|.++.+..
T Consensus        85 ~~~d~li~~ag   95 (258)
T PRK06949         85 GTIDILVNNSG   95 (258)
T ss_pred             CCCCEEEECCC
Confidence            24688887653

>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]

Probab=84.91  E-value=0.44  Score=33.06  Aligned_cols=15  Identities=40%  Similarity=0.673  Sum_probs=12.9

Q ss_pred             CcceeecccCcccch
Q 047897           95 QFDLVVANIPYGISS  109 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~~  109 (232)
                      .||+||+||||....
T Consensus         2 kFD~VIGNPPY~~~~   16 (106)
T PF07669_consen    2 KFDVVIGNPPYIKIK   16 (106)
T ss_pred             CcCEEEECCCChhhc
Confidence            489999999998765

The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification

>PRK06172 short chain dehydrogenase; Provisional

Probab=84.86  E-value=7.7  Score=30.79  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.+++-.+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         6 ~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g   83 (253)
T PRK06172          6 SGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYG   83 (253)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            35678888864432   334444478899999999877666555554443  46889999997642            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      .+|.|+.|.-
T Consensus        84 ~id~li~~ag   93 (253)
T PRK06172         84 RLDYAFNNAG   93 (253)
T ss_pred             CCCEEEECCC
Confidence            4688887653

>PRK06720 hypothetical protein; Provisional

Probab=84.43  E-value=13  Score=28.09  Aligned_cols=73  Identities=22%  Similarity=0.280  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+..+|=.|.|.|.   ++..+++.+.+|+.+|.+....+...+.+...+  ..+.++..|..+..            +.
T Consensus        15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G   92 (169)
T PRK06720         15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFS   92 (169)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            45677777766543   444555678999999988776655544444333  35777888886542            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.++.|..
T Consensus        93 ~iDilVnnAG  102 (169)
T PRK06720         93 RIDMLFQNAG  102 (169)
T ss_pred             CCCEEEECCC
Confidence            5688888754

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=84.30  E-value=7.1  Score=31.27  Aligned_cols=70  Identities=26%  Similarity=0.374  Sum_probs=46.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      ++.++|=.|++.|.   ++..+++.+.+|+.++.+++.++.+.+..   +  .++.++.+|+.+..            .+
T Consensus         5 ~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   79 (263)
T PRK06200          5 HGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF---G--DHVLVVEGDVTSYADNQRAVDQTVDAFG   79 (263)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence            45678888865442   44445557899999999887665554433   1  45788899987642            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.+|.|..
T Consensus        80 ~id~li~~ag   89 (263)
T PRK06200         80 KLDCFVGNAG   89 (263)
T ss_pred             CCCEEEECCC
Confidence            5788887754

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=84.15  E-value=8.7  Score=30.64  Aligned_cols=72  Identities=22%  Similarity=0.247  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      ++.++|=.| |+|.++..+++    .+.+|+.++.+++-.+.........+  .++.++.+|+.+..            .
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            456788888 45555555554    68899999998877666665554433  46888999998742            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      +..|.|+.+..
T Consensus        88 ~~id~vi~~ag   98 (259)
T PRK08213         88 GHVDILVNNAG   98 (259)
T ss_pred             CCCCEEEECCC
Confidence            25688887654

>PRK06125 short chain dehydrogenase; Provisional

Probab=84.02  E-value=11  Score=30.14  Aligned_cols=73  Identities=19%  Similarity=0.189  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.+++..+.+.+.+.... ..++.++.+|+.+..        .+..|.
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            35678888864442   333444578899999999877666555554321 146888899987642        235788


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      ++.|.
T Consensus        85 lv~~a   89 (259)
T PRK06125         85 LVNNA   89 (259)
T ss_pred             EEECC
Confidence            88764

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=83.98  E-value=11  Score=29.99  Aligned_cols=73  Identities=15%  Similarity=0.232  Sum_probs=47.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+..+|=.|++.|.   ++..+++.+.+|+.++.++...+...+.....+  .++.++.+|+.+..            ++
T Consensus         8 ~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   85 (254)
T PRK08085          8 AGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIG   85 (254)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence            45678888855432   444444478899999998776665555554433  35778889987652            13


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      .+|.++.|..
T Consensus        86 ~id~vi~~ag   95 (254)
T PRK08085         86 PIDVLINNAG   95 (254)
T ss_pred             CCCEEEECCC
Confidence            5788888753

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=83.77  E-value=9.1  Score=30.45  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|+ +|.++..+++    .+.+|++++.++...+.+.+.+...+  .++.++.+|+.+..            .
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            4668888885 5555555444    68899999999877666655555433  35888999997742            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ...|.+|.+..
T Consensus        86 ~~~d~li~~ag   96 (255)
T PRK07523         86 GPIDILVNNAG   96 (255)
T ss_pred             CCCCEEEECCC
Confidence            24688887753

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=83.74  E-value=0.79  Score=41.46  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=29.6

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCH
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDE   62 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~   62 (232)
                      +.++..|||+||.+|+......+   .+.-|+|+|+-|
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            35678899999999999988887   467899999866

>PRK06914 short chain dehydrogenase; Provisional

Probab=83.70  E-value=9.5  Score=30.83  Aligned_cols=72  Identities=19%  Similarity=0.195  Sum_probs=46.4

Q ss_pred             CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------CC
Q 047897           31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------PQ   95 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~   95 (232)
                      +.++|=.|++. .++..    +++.+.+|++++.+++-.+...+.....+...++.++.+|+.+...           +.
T Consensus         3 ~k~~lItGasg-~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~   81 (280)
T PRK06914          3 KKIAIVTGASS-GFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGR   81 (280)
T ss_pred             CCEEEEECCCc-hHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCC
Confidence            44677777543 43444    4457889999998887665555444433333468899999977431           24


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|.|+.+.
T Consensus        82 id~vv~~a   89 (280)
T PRK06914         82 IDLLVNNA   89 (280)
T ss_pred             eeEEEECC
Confidence            68777764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=83.59  E-value=9.1  Score=33.57  Aligned_cols=79  Identities=20%  Similarity=0.228  Sum_probs=47.8

Q ss_pred             CCCEEEEEcCCccHh--HHHHHhcCCeEEEEEcCH-HHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcc
Q 047897           30 PDDTVLEIGPGTGNL--TLKLLEVSKKVHAIEIDE-RMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYG  106 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~--t~~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~  106 (232)
                      .+.+|+=+|+|..+.  +..+++.+..|+++|.+. +.++...+.+...    +++++.+|..+.....+|+|+.+.-..
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~d~vv~~~g~~   79 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGEL----GIELVLGEYPEEFLEGVDLVVVSPGVP   79 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhc----CCEEEeCCcchhHhhcCCEEEECCCCC
Confidence            356788888877543  333444789999999985 3232222233332    356777777664445789888765444


Q ss_pred             cchHHH
Q 047897          107 ISSPLV  112 (232)
Q Consensus       107 ~~~~~l  112 (232)
                      ...+.+
T Consensus        80 ~~~~~~   85 (450)
T PRK14106         80 LDSPPV   85 (450)
T ss_pred             CCCHHH
Confidence            444443

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=83.56  E-value=8  Score=31.02  Aligned_cols=71  Identities=10%  Similarity=0.196  Sum_probs=44.2

Q ss_pred             CCCEEEEEcCCcc-HhH----HHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           30 PDDTVLEIGPGTG-NLT----LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G-~~t----~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      .+.++|=.|+++| .++    ..+++.+.+|+.++.+....+.+.+.....   +...++.+|+.+..            
T Consensus         9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEEL---DAPIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhh---ccceEEecCcCCHHHHHHHHHHHHHH
Confidence            4678899997652 444    444557889999988865433333333222   23457788887652            


Q ss_pred             CCCcceeeccc
Q 047897           93 FPQFDLVVANI  103 (232)
Q Consensus        93 ~~~~D~Vi~n~  103 (232)
                      +...|+++.|.
T Consensus        86 ~g~ld~lv~nA   96 (258)
T PRK07533         86 WGRLDFLLHSI   96 (258)
T ss_pred             cCCCCEEEEcC
Confidence            23578888875

>PRK08339 short chain dehydrogenase; Provisional

Probab=83.55  E-value=9.6  Score=30.67  Aligned_cols=73  Identities=12%  Similarity=0.140  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------CCC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------FPQ   95 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~   95 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+.+.... ..++.++.+|+.+..           ++.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            46678888876553   555566688999999999877666655553321 146888999988752           124


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|+++.|.
T Consensus        86 iD~lv~na   93 (263)
T PRK08339         86 PDIFFFST   93 (263)
T ss_pred             CcEEEECC
Confidence            68888764

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=82.87  E-value=11  Score=29.56  Aligned_cols=71  Identities=13%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +.++|=.|+ +|.++..+++    .+.+|++++.++.-.+.........+  .++.++.+|..+..            ++
T Consensus         7 ~~~vlVtG~-sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (239)
T PRK07666          7 GKNALITGA-GRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELG   83 (239)
T ss_pred             CCEEEEEcC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456777874 5666665544    68899999998765554444443333  46889999987653            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.|+.+..
T Consensus        84 ~id~vi~~ag   93 (239)
T PRK07666         84 SIDILINNAG   93 (239)
T ss_pred             CccEEEEcCc
Confidence            5688887653

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=82.66  E-value=1.4  Score=35.84  Aligned_cols=45  Identities=22%  Similarity=0.253  Sum_probs=29.2

Q ss_pred             CCCEEEEEcCCccHhHHH-HHhcCCeEEEEEcCHHHHHHHHHHHhh
Q 047897           30 PDDTVLEIGPGTGNLTLK-LLEVSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~-l~~~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      +|.++||||||+-..-.. +.+...+++..|..+.-.+..++-++.
T Consensus        56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~  101 (256)
T PF01234_consen   56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRK  101 (256)
T ss_dssp             -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCC
Confidence            577999999999654322 223567899999998877765555543

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.30  E-value=9.6  Score=31.43  Aligned_cols=75  Identities=23%  Similarity=0.310  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+..|+==||.+|.   ++..+++.+.+++-+-...+-++...+.++..+-..++.++.+|+.+..            ++
T Consensus        11 ~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg   90 (282)
T KOG1205|consen   11 AGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG   90 (282)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence            47789999998874   7777777888888777777777776555554443235999999998863            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|--
T Consensus        91 ~vDvLVNNAG  100 (282)
T KOG1205|consen   91 RVDVLVNNAG  100 (282)
T ss_pred             CCCEEEecCc
Confidence            5799998843

>PRK08703 short chain dehydrogenase; Provisional

Probab=82.25  E-value=11  Score=29.51  Aligned_cols=59  Identities=17%  Similarity=0.215  Sum_probs=37.4

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.++|=.|++ |.++..    +++.+.+|++++.++.-.+...+.+...+. ..+.++..|..+
T Consensus         5 ~~k~vlItG~s-ggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~   67 (239)
T PRK08703          5 SDKTILVTGAS-QGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMS   67 (239)
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecc
Confidence            45688888864 444444    444788999999998766655555443321 235566777654

>PRK08265 short chain dehydrogenase; Provisional

Probab=82.09  E-value=10  Score=30.39  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=45.0

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-.+...+..   +  .++.++.+|+.+..            +.
T Consensus         5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g   79 (261)
T PRK08265          5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARFG   79 (261)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            3567887885443   244445557889999999876444333322   2  46888999998753            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.++.|..
T Consensus        80 ~id~lv~~ag   89 (261)
T PRK08265         80 RVDILVNLAC   89 (261)
T ss_pred             CCCEEEECCC
Confidence            4688887753

>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional

Probab=82.04  E-value=3.6  Score=27.82  Aligned_cols=51  Identities=12%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             EcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--CCcceeecccC
Q 047897           37 IGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--PQFDLVVANIP  104 (232)
Q Consensus        37 iG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~p  104 (232)
                      +-||+|.-|..++.               ...++.+...|.+  +++.+.+..+.+.  ..+|+|++..+
T Consensus         7 vvCgsG~~TS~m~~---------------~ki~~~l~~~gi~--~~v~~~~~~e~~~~~~~~D~iv~t~~   59 (94)
T PRK10310          7 VACGGAVATSTMAA---------------EEIKELCQSHNIP--VELIQCRVNEIETYMDGVHLICTTAR   59 (94)
T ss_pred             EECCCchhHHHHHH---------------HHHHHHHHHCCCe--EEEEEecHHHHhhhcCCCCEEEECCc
Confidence            67899987766642               2344555556653  6777777765543  46787776544

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=81.99  E-value=10  Score=30.23  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=45.3

Q ss_pred             EEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCcc
Q 047897           33 TVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQFD   97 (232)
Q Consensus        33 ~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~D   97 (232)
                      ++|=.|++.|.   ++..+++.+.+|+.++.++..++.+.+.+...   +++.++.+|+.+..            ++..|
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id   78 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEY---GEVYAVKADLSDKDDLKNLVKEAWELLGGID   78 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc---CCceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence            46667765442   44445557899999999987776665555433   35788899987642            23578


Q ss_pred             eeeccc
Q 047897           98 LVVANI  103 (232)
Q Consensus        98 ~Vi~n~  103 (232)
                      ++|.|.
T Consensus        79 ~li~na   84 (259)
T PRK08340         79 ALVWNA   84 (259)
T ss_pred             EEEECC
Confidence            888775

>PRK07326 short chain dehydrogenase; Provisional

Probab=81.95  E-value=10  Score=29.62  Aligned_cols=70  Identities=17%  Similarity=0.230  Sum_probs=45.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+..+|=+|. +|.++..+++    .+.+|++++.++.......+.+...   .++.++.+|+.+..            .
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3567888884 5655555544    6789999999887665554444322   35888999987642            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|.|+.+.
T Consensus        81 ~~~d~vi~~a   90 (237)
T PRK07326         81 GGLDVLIANA   90 (237)
T ss_pred             CCCCEEEECC
Confidence            2467777653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=81.90  E-value=11  Score=30.05  Aligned_cols=71  Identities=13%  Similarity=0.225  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      ++.++|=.|+ +|.++..    +++.+.+|++++.++...+.+.+.+...+  .++.++.+|+.+...            
T Consensus         6 ~~~~vlItGa-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~   82 (262)
T PRK13394          6 NGKTAVVTGA-ASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERF   82 (262)
T ss_pred             CCCEEEEECC-CChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3567775555 4444444    44478899999999876666666555443  468889999876531            


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ++.|.||.+.
T Consensus        83 ~~~d~vi~~a   92 (262)
T PRK13394         83 GSVDILVSNA   92 (262)
T ss_pred             CCCCEEEECC
Confidence            2468888764

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=81.84  E-value=12  Score=29.79  Aligned_cols=71  Identities=17%  Similarity=0.297  Sum_probs=44.9

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.++...+ ..+.+...+  .++.++.+|+.+..            .+
T Consensus         7 ~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~-~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   83 (260)
T PRK12823          7 AGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHE-VAAELRAAG--GEALALTADLETYAGAQAAMAAAVEAFG   83 (260)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHH-HHHHHHhcC--CeEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            35678888865442   45555557889999998864333 233333323  45788899987742            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.++.|.
T Consensus        84 ~id~lv~nA   92 (260)
T PRK12823         84 RIDVLINNV   92 (260)
T ss_pred             CCeEEEECC
Confidence            578888775

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=81.77  E-value=4.7  Score=29.78  Aligned_cols=45  Identities=22%  Similarity=0.310  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEID   61 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~   61 (232)
                      +..++.........+| -|||+|-|.|..=-.|-+  ++.+++.+|..
T Consensus        15 R~~L~~a~~~v~~~~G-~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   15 RDCLNWAAAQVAGLPG-PVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             HHHHHHHHHHTTT--S--EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             HHHHHHHHHHhcCCCC-ceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            4555666666654444 699999999997777777  67899999853

>PRK06194 hypothetical protein; Provisional

Probab=81.50  E-value=12  Score=30.40  Aligned_cols=71  Identities=11%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +.++|=.|+ +|.++..    +++.+.+|+.+|.+.+..+...+.+...+  .++.++.+|+.+..            .+
T Consensus         6 ~k~vlVtGa-sggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g   82 (287)
T PRK06194          6 GKVAVITGA-ASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFG   82 (287)
T ss_pred             CCEEEEeCC-ccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            457886664 4444444    44478899999998776655544444333  36888999997642            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.|+.|.-
T Consensus        83 ~id~vi~~Ag   92 (287)
T PRK06194         83 AVHLLFNNAG   92 (287)
T ss_pred             CCCEEEECCC
Confidence            4688887753

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=81.31  E-value=8.8  Score=31.71  Aligned_cols=72  Identities=18%  Similarity=0.149  Sum_probs=43.3

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeec
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVA  101 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~  101 (232)
                      +.+||=.| |+|.++..+++    .+.+|+++..++.............+..++++++.+|+.+...     ...|.|+.
T Consensus         4 ~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          4 GKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            45677666 46777666655    6789999887754322222221111112478999999987531     25687776


Q ss_pred             cc
Q 047897          102 NI  103 (232)
Q Consensus       102 n~  103 (232)
                      ..
T Consensus        83 ~A   84 (322)
T PLN02662         83 TA   84 (322)
T ss_pred             eC
Confidence            43

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=81.24  E-value=13  Score=29.24  Aligned_cols=72  Identities=15%  Similarity=0.237  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      ++.++|=.|+ +|.++..+    ++.+.+|+.++.++.-.+.+.+.....+  .++.++..|+.+..            .
T Consensus         4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (253)
T PRK08217          4 KDKVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDF   80 (253)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4667888885 34444444    3467899999999876665555554433  46888999986632            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ..+|.||.|..
T Consensus        81 ~~id~vi~~ag   91 (253)
T PRK08217         81 GQLNGLINNAG   91 (253)
T ss_pred             CCCCEEEECCC
Confidence            24688887753

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=81.12  E-value=1.2  Score=37.71  Aligned_cols=58  Identities=16%  Similarity=0.238  Sum_probs=38.7

Q ss_pred             CCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           31 DDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ..++||+|.|+|.-..++..   ....++.+|.++.+-++.......... .......+|+.
T Consensus       114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt  174 (484)
T COG5459         114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVT  174 (484)
T ss_pred             cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccc
Confidence            45799999999987766655   346788899998877776666554433 23334444443

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=81.07  E-value=5.9  Score=33.52  Aligned_cols=22  Identities=14%  Similarity=0.196  Sum_probs=16.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE   50 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~   50 (232)
                      ...-+|+|+||.+|..|..+..
T Consensus        15 ~~~~~iaD~GcS~G~Nsl~~~~   36 (334)
T PF03492_consen   15 PKPFRIADLGCSSGPNSLLAVS   36 (334)
T ss_dssp             TTEEEEEEES--SSHHHHHHHH
T ss_pred             CCceEEEecCCCCCccHHHHHH
Confidence            3455899999999999988776

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=80.95  E-value=7.5  Score=31.41  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=27.7

Q ss_pred             CCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           31 DDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      ...|||+|+|+|..+..++. .+..|+.-|.-. .++....+
T Consensus        87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~-~~~~L~~~  127 (248)
T KOG2793|consen   87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPK-VVENLKFN  127 (248)
T ss_pred             ceeEEEecCCccHHHHHHHHHhcceeccCCchh-hHHHHHHh
Confidence            45799999999977777666 567888877643 33333333

>PRK12829 short chain dehydrogenase; Provisional

Probab=80.90  E-value=13  Score=29.62  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=46.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      .++.++|=.|++ |.++..+++    .+.+|++++.+++..+...+....    .++.++.+|+.+..            
T Consensus         9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (264)
T PRK12829          9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPG----AKVTATVADVADPAQVERVFDTAVER   83 (264)
T ss_pred             cCCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence            366789988875 555555444    688999999988766554433321    24688899987643            


Q ss_pred             CCCcceeecccC
Q 047897           93 FPQFDLVVANIP  104 (232)
Q Consensus        93 ~~~~D~Vi~n~p  104 (232)
                      ....|.|+.+..
T Consensus        84 ~~~~d~vi~~ag   95 (264)
T PRK12829         84 FGGLDVLVNNAG   95 (264)
T ss_pred             hCCCCEEEECCC
Confidence            125788887643

>KOG2811 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.83  E-value=6.5  Score=33.53  Aligned_cols=62  Identities=13%  Similarity=0.178  Sum_probs=40.0

Q ss_pred             CCEEEEEcCCccHhHHHHHh--cCCeEEE---EEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           31 DDTVLEIGPGTGNLTLKLLE--VSKKVHA---IEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~---vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      +..++|.|||.|.++..+..  ....++-   +|....-...=+.......  ..++-+..|+.++.+.
T Consensus       183 ~~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR~s~R~K~D~k~~~~~~--~vi~R~riDI~dLkL~  249 (420)
T KOG2811|consen  183 SSCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDRKSSRLKFDRKLRNKNS--LVIKRIRIDIEDLKLN  249 (420)
T ss_pred             cceEEEecCCchHHHHHHHHHhccccEEEEEeecccchhhhhhhhhhccCc--chhheeEeeHHhcCcc
Confidence            36899999999999999987  3344444   7776655544333333221  3456677788776544

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=80.83  E-value=13  Score=29.47  Aligned_cols=72  Identities=14%  Similarity=0.231  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+++.++.+....+.+...+...+  .++.++.+|+.+..            ..
T Consensus        10 ~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~~   87 (255)
T PRK06113         10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKLG   87 (255)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            46789999965552   444455578899999988777666555554433  45788899987653            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      .+|.++.+.
T Consensus        88 ~~d~li~~a   96 (255)
T PRK06113         88 KVDILVNNA   96 (255)
T ss_pred             CCCEEEECC
Confidence            468887764

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=80.58  E-value=7.3  Score=36.20  Aligned_cols=87  Identities=20%  Similarity=0.073  Sum_probs=50.4

Q ss_pred             CCEEEEEcCCccHhHHHHHh---------c-----CCeEEEEEcCHHH--------------HHHHHHHHhh-----cCC
Q 047897           31 DDTVLEIGPGTGNLTLKLLE---------V-----SKKVHAIEIDERM--------------VEILNRRAAD-----SGF   77 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~---------~-----~~~v~~vD~~~~~--------------~~~a~~~~~~-----~~~   77 (232)
                      .-+|+|+|-|+|......++         .     .-+++++|.+|-.              .+.+++....     .|+
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            45899999999986666553         1     1378999986522              2222222211     121


Q ss_pred             ------Cc--cEEEEEcCCCCCCC---CCcceeeccc------CcccchHHHHHHhc
Q 047897           78 ------HD--RLNVISKDALKTEF---PQFDLVVANI------PYGISSPLVAKLVY  117 (232)
Q Consensus        78 ------~~--~~~~~~~D~~~~~~---~~~D~Vi~n~------p~~~~~~~l~~~~~  117 (232)
                            .+  ++++..||+.+.-.   ..+|+++.+.      |--|+.+++..+..
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~  194 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALAR  194 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHH
Confidence                  11  45678889875321   3589999873      33355666555443

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=80.40  E-value=10  Score=30.69  Aligned_cols=61  Identities=16%  Similarity=0.157  Sum_probs=41.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ..+..++|+|+|+-.-|..+++      ...+.+.+|+|...++...+.+......-.+.-+.+|..
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~  143 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYE  143 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHH
Confidence            3567899999999999988887      236899999999887654444433211112444555553

>PRK07102 short chain dehydrogenase; Provisional

Probab=80.10  E-value=13  Score=29.21  Aligned_cols=69  Identities=19%  Similarity=0.190  Sum_probs=44.5

Q ss_pred             EEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---------CCccee
Q 047897           33 TVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---------PQFDLV   99 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---------~~~D~V   99 (232)
                      +++=.|+ +|.++..+    ++.+.+|++++.+++-.+...+.....+- .++.++.+|..+...         ..+|.+
T Consensus         3 ~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          3 KILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGA-VAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             EEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            5776774 45555544    44688999999988765544444333221 478999999987532         136888


Q ss_pred             eccc
Q 047897          100 VANI  103 (232)
Q Consensus       100 i~n~  103 (232)
                      +.|.
T Consensus        81 v~~a   84 (243)
T PRK07102         81 LIAV   84 (243)
T ss_pred             EECC
Confidence            8764

>PRK06196 oxidoreductase; Provisional

Probab=80.05  E-value=11  Score=31.32  Aligned_cols=78  Identities=14%  Similarity=0.147  Sum_probs=48.8

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      ...+....++ .+.+||=.|++ |.++..++    +.+.+|++++.+++..+.+.+.+      .++.++.+|+.+..  
T Consensus        15 ~~~~~~~~~l-~~k~vlITGas-ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l------~~v~~~~~Dl~d~~~v   86 (315)
T PRK06196         15 AEEVLAGHDL-SGKTAIVTGGY-SGLGLETTRALAQAGAHVIVPARRPDVAREALAGI------DGVEVVMLDLADLESV   86 (315)
T ss_pred             HHHHhcCCCC-CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh------hhCeEEEccCCCHHHH
Confidence            4444433333 45678888864 44554444    47889999999877655443333      23778899987753  


Q ss_pred             ----------CCCcceeecccC
Q 047897           93 ----------FPQFDLVVANIP  104 (232)
Q Consensus        93 ----------~~~~D~Vi~n~p  104 (232)
                                ....|++|.|..
T Consensus        87 ~~~~~~~~~~~~~iD~li~nAg  108 (315)
T PRK06196         87 RAFAERFLDSGRRIDILINNAG  108 (315)
T ss_pred             HHHHHHHHhcCCCCCEEEECCC
Confidence                      135788888753

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=80.05  E-value=2.2  Score=32.75  Aligned_cols=35  Identities=40%  Similarity=0.477  Sum_probs=19.7

Q ss_pred             EEEcCCccH--hHHHHHhcCCeEEEEEcCHHHHHHHH
Q 047897           35 LEIGPGTGN--LTLKLLEVSKKVHAIEIDERMVEILN   69 (232)
Q Consensus        35 LDiG~G~G~--~t~~l~~~~~~v~~vD~~~~~~~~a~   69 (232)
                      -=+|.|-=+  ++..+++.+.+|+|+|+|++.++..+
T Consensus         4 ~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~   40 (185)
T PF03721_consen    4 AVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALN   40 (185)
T ss_dssp             EEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHH
T ss_pred             EEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHh
Confidence            334544433  22334447899999999999877654

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	232
1zq9_A	285	Crystal Structure Of Human Dimethyladenosine Transf		4e-55
2h1r_A	299	Crystal Structure Of A Dimethyladenosine Transferas		4e-52
3grr_A	295	Crystal Structure Of The Complex Between S-Adenosyl		2e-29
3fyd_A	263	Crystal Structure Of Dim1 From The Thermophilic Arc		1e-28
3fyc_A	265	Crystal Structure Of Dim1 From The Thermophilic Arc		2e-28
3tqs_A	255	Structure Of The Dimethyladenosine Transferase (Ksg		3e-25
3fuu_A	271	T. Thermophilus 16s Rrna A1518 And A1519 Methyltran		2e-22
3fut_A	271	Apo-Form Of T. Thermophilus 16s Rrna A1518 And A151		4e-22
3uzu_A	279	The Structure Of The Ribosomal Rna Small Subunit Me		5e-22
3ftc_A	249	Crystal Structure Of A. Aeolicus Ksga At 1.72-Angst		1e-21
3r9x_B	248	Crystal Structure Of Era In Complex With Mggdpnp, N		1e-21
3tpz_A	273	2.1 Angstrom Crystal Structure Of The L114p Mutant		9e-21
1qyr_A	252	2.1 Angstrom Crystal Structure Of Ksga: A Universal		2e-20
2erc_A	244	Crystal Structure Of Ermc' A Rrna-Methyl Transferas		3e-19
1yub_A	245	Solution Structure Of An Rrna Methyltransferase (Er		8e-19

>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase Length = 285

Iteration: 1
 Score =  211 bits (536), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 105/209 (50%), Positives = 140/209 (66%)
Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
           GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D R+V  L
Sbjct: 7   GQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAEL 66
Query: 69  NRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLL 128
           ++R   +    +L V+  D LKT+ P FD  VAN+PY ISSP V KL+     FR A L+
Sbjct: 67  HKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILM 126
Query: 129 LQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAE 188
            Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV I PK  
Sbjct: 127 FQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNP 186
Query: 189 IPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
            P +N  EW    R  F +KNKTL A FK
Sbjct: 187 PPPINFQEWDGLVRITFVRKNKTLSAAFK 215

>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From Plasmodium Falciparum Length = 299

Iteration: 1
 Score =  201 bits (510), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/211 (49%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query: 8   KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
           +GQH+L N  +LD I+  + I   D VLEIG GTGNLT+KLL ++KKV  I+ID RM+  
Sbjct: 20  QGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISE 79
Query: 68  LNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATL 127
           + +R    G+++ L V   DA+KT FP+FD+  ANIPY ISSPL+ KL+     F+ A L
Sbjct: 80  VKKRCLYEGYNN-LEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFKCAVL 138
Query: 128 LLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA 187
           + QKEFA R+LA+ GDS ++RL +NVKL   V  V +V++  F P PKVDS +V + PK 
Sbjct: 139 MFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKE 198
Query: 188 EIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
                N DEW    R CFS+K KTL A FK+
Sbjct: 199 SSFLTNFDEWDNLLRICFSRKRKTLHAIFKR 229

>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl Homocysteine And Methanocaldococcus Jannaschi Dim1. Length = 295

Iteration: 1
 Score =  125 bits (314), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 121/210 (57%), Gaps = 8/210 (3%)
Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
           K  GQ  L ++  ++  V  +++  DD VLEIG G G LT +L + +KKV+ IEID+ + 
Sbjct: 26  KKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLE 85
Query: 66  EILNRRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGTKSFR 123
              N+       ++ + +I  DALK +  + D   VVAN+PY ISSP+  KL+   + F 
Sbjct: 86  PYANKLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFD 140
Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
            A L+ Q EFA+R++A+ G  ++ RL+V V+  ADVE V  V    F P PKV S++V I
Sbjct: 141 LAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKI 200
Query: 184 RP-KAEIPDVNLDEWRAFTRTCFSKKNKTL 212
           +P K +    N + +  F R  F  +NK++
Sbjct: 201 KPNKGKYHIENENFFDDFLRAIFQHRNKSV 230

>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 263

Iteration: 1
 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/206 (37%), Positives = 119/206 (57%), Gaps = 8/206 (3%)
Query: 10  QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
           Q  L ++  ++  V  +++  DD VLEIG G G LT +L + +KKV+ IEID+ +    N
Sbjct: 1   QCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYAN 60
Query: 70  RRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGTKSFRSATL 127
           +       ++ + +I  DALK +  + D   VVAN+PY ISSP+  KL+   + F  A L
Sbjct: 61  KLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAVL 115
Query: 128 LLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP-K 186
           + Q EFA+R++A+ G  ++ RL+V V+  ADVE V  V    F P PKV S++V I+P K
Sbjct: 116 MYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNK 175
Query: 187 AEIPDVNLDEWRAFTRTCFSKKNKTL 212
            +    N + +  F R  F  +NK++
Sbjct: 176 GKYHIENENFFDDFLRAIFQHRNKSV 201

>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon, Methanocaldococcus Jannaschi Length = 265

Iteration: 1
 Score =  122 bits (305), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/209 (37%), Positives = 118/209 (56%), Gaps = 12/209 (5%)
Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
            Q  L ++  ++  V  +++  DD VLEIG G G LT +L + +KKV+ IEID+ +    
Sbjct: 2   AQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYA 61
Query: 69  NRRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGTKSFRSAT 126
           N+       ++ + +I  DALK +  + D   VVAN+PY ISSP+  KL+   + F  A 
Sbjct: 62  NKLKE---LYNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--KRGFDLAV 116
Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP- 185
           L+ Q EFA+R++A  G  ++ RL+V V+  ADVE V  V    F P PKV S++V I+P 
Sbjct: 117 LMYQYEFAKRMVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPN 176
Query: 186 --KAEIPDVNLDEWRAFTRTCFSKKNKTL 212
             K  I + N   +  F R  F  +NK++
Sbjct: 177 KGKYHIENENF--FDDFLRAIFQHRNKSV 203

>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From Coxiella Burnetii Length = 255

Iteration: 1
 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 110/222 (49%), Gaps = 14/222 (6%)
Query: 6   KSKGQHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           K  GQH L +  VL  IV  S+I+P   DT++EIGPG G LT  LL     +  +EID  
Sbjct: 5   KRFGQHFLHDSFVLQKIV--SAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRD 62
Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYG 118
           +V  L ++         + +   DAL+ +F          VV N+PY IS+PL+  L   
Sbjct: 63  LVAFLQKKYNQQ---KNITIYQNDALQFDFSSVKTDKPLRVVGNLPYNISTPLLFHLFSQ 119
Query: 119 TKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDS 178
                     LQKE  RR+ A  G  ++ RL+V  +   D  ++  VS + F P P+V+S
Sbjct: 120 IHCIEDXHFXLQKEVVRRITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTPPPRVES 179
Query: 179 SVVIIRPKAEIPDV--NLDEWRAFTRTCFSKKNKTLGATFKQ 218
           +++ + P+     V  NLD+     +  FS + KT+G   K+
Sbjct: 180 AIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKK 221

>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Complex With Adenosine In Space Group P212121 Length = 271

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 113/234 (48%), Gaps = 18/234 (7%)
Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINP-DDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
           +F  K  GQ+ L ++  L  IV   +  P    V E+GPG G LT  LLE   +V AIE 
Sbjct: 19  LFADKRFGQNFLVSEAHLRRIV--EAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEK 76
Query: 61  DERMVEILNRRAADSGFHDRLNVISKDAL---KTEFPQFDLVVANIPYGISSPLVAKLVY 117
           D R+  +L      SG   RL  + +DAL     E PQ  L+VAN+PY I++PLV +L+ 
Sbjct: 77  DLRLRPVLEE--TLSGLPVRL--VFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLK 132
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
            T  F     L+QKE A R+ A P    +  L + V   A  E + D+    F P PKV 
Sbjct: 133 -TGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191
Query: 178 SSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKT----LGATFKQKKKVIELLR 227
           SS+V + P   + D  L          F K+ KT    L A    K +V E LR
Sbjct: 192 SSLVRLTPTGALDDPGLFR---LVEAAFGKRRKTLLNALAAAGYPKARVEEALR 242

>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase (Ksga) In Space Group P21212 Length = 271

Iteration: 1
 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/234 (36%), Positives = 112/234 (47%), Gaps = 18/234 (7%)
Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINP-DDTVLEIGPGTGNLTLKLLEVSKKVHAIEI 60
           +F  K  GQ+ L ++  L  IV   +  P    V E+GPG G LT  LLE   +V AIE 
Sbjct: 19  LFADKRFGQNFLVSEAHLRRIV--EAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEK 76
Query: 61  DERMVEILNRRAADSGFHDRLNVISKDAL---KTEFPQFDLVVANIPYGISSPLVAKLVY 117
           D R+  +L      SG   RL  + +DAL     E PQ  L+VAN+PY I++PLV +L+ 
Sbjct: 77  DLRLRPVLEE--TLSGLPVRL--VFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLK 132
Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
            T  F     L+QKE A R  A P    +  L + V   A  E + D+    F P PKV 
Sbjct: 133 -TGRFARLVFLVQKEVAERXTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVW 191
Query: 178 SSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKT----LGATFKQKKKVIELLR 227
           SS+V + P   + D  L          F K+ KT    L A    K +V E LR
Sbjct: 192 SSLVRLTPTGALDDPGLFR---LVEAAFGKRRKTLLNALAAAGYPKARVEEALR 242

>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit Methyltransferase A From Burkholderia Pseudomallei Length = 279

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 23/239 (9%)
Query: 3   FFHKSKGQHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLT----LKLLEVSKKVH 56
           F  K  GQ+ L +  V+D+IV  ++I P+  + ++EIGPG G LT     +L      +H
Sbjct: 15  FARKRFGQNFLVDHGVIDAIV--AAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLH 72
Query: 57  AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL--------VVANIPYGIS 108
           A+E+D  ++  L +R     F + L + + DAL  +F             ++ N+PY IS
Sbjct: 73  AVELDRDLIGRLEQR-----FGELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNIS 127
Query: 109 SPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKR 168
           SPL+  L+           +LQ E   R++A PG   F+RL+V ++    ++ ++DV   
Sbjct: 128 SPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPE 187
Query: 169 DFLPCPKVDSSVVIIRPKA--EIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
            F P PKVDS++V + P A  E+P V+           FS++ K L  T    + +++ 
Sbjct: 188 SFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDLVDF 246

>pdb|3FTC|A Chain A, Crystal Structure Of A. Aeolicus Ksga At 1.72-Angstrom Resolution Length = 249

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERM 64
           KS GQH+L ++ VL  I  + +I   +TV+E+G GTGNLT  LL+   KK++ IE+D  M
Sbjct: 7   KSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREM 66
Query: 65  VEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYGT 119
           VE L +   D    +RL VI++DA  ++FP   L     VV N+PY ++S ++   VY  
Sbjct: 67  VENL-KSIGD----ERLEVINEDA--SKFPFCSLGKELKVVGNLPYNVASLIIENTVYNK 119
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
                A  ++QKE A +L    G  +   L+V V+   DV +VM V  R F+P PKV S+
Sbjct: 120 DCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSA 176
Query: 180 VVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTL 212
           V+ +    + P  +L  ++ F    F  + K L
Sbjct: 177 VIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 209

>pdb|3R9X|B Chain B, Crystal Structure Of Era In Complex With Mggdpnp, Nucleotides 1506- 1542 Of 16s Ribosomal Rna, And Ksga Length = 248

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/213 (36%), Positives = 117/213 (54%), Gaps = 16/213 (7%)
Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERM 64
           KS GQH+L ++ VL  I  + +I   +TV+E+G GTGNLT  LL+   KK++ IE+D  M
Sbjct: 6   KSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREM 65
Query: 65  VEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLVYGT 119
           VE L +   D    +RL VI++DA  ++FP   L     VV N+PY ++S ++   VY  
Sbjct: 66  VENL-KSIGD----ERLEVINEDA--SKFPFCSLGKELKVVGNLPYNVASLIIENTVYNK 118
Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
                A  ++QKE A +L    G  +   L+V V+   DV +VM V  R F+P PKV S+
Sbjct: 119 DCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSA 175
Query: 180 VVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTL 212
           V+ +    + P  +L  ++ F    F  + K L
Sbjct: 176 VIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVL 208

>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E. Coli Ksga Length = 273

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 71/219 (32%), Positives = 109/219 (49%), Gaps = 18/219 (8%)
Query: 6   KSKGQHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           K  GQ+ L +Q V+DSIV  S+INP     ++EIGPG   LT  + E   ++  IE+D  
Sbjct: 13  KRFGQNFLNDQFVIDSIV--SAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR- 69
Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFD-------LVVANIPYGISSPLVAKLV 116
             ++  R         +L +  +DA+   F +          V  N PY IS+PL+  L 
Sbjct: 70  --DLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNPPYNISTPLMFHLF 127
Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
             T +      +LQKE   RL+A P    + RL+V  +   +V  V++V    F P PKV
Sbjct: 128 SYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKV 187
Query: 177 DSSVVIIRPKAEIPDVNLDEWRAFTRT---CFSKKNKTL 212
           DS+VV + P A +P   + + R  +R     F+++ KT+
Sbjct: 188 DSAVVRLVPHATMPH-PVKDVRVLSRITTEAFNQRRKTI 225

>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally Conserved Adenosine Dimethyltransferase Length = 252

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/215 (32%), Positives = 108/215 (50%), Gaps = 18/215 (8%)
Query: 10  QHILTNQRVLDSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
           Q+ L +Q V+DSIV  S+INP     ++EIGPG   LT  + E   ++  IE+D    ++
Sbjct: 1   QNFLNDQFVIDSIV--SAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR---DL 55
Query: 68  LNRRAADSGFHDRLNVISKDALKTEFPQFD-------LVVANIPYGISSPLVAKLVYGTK 120
             R         +L +  +DA+   F +          V  N+PY IS+PL+  L   T 
Sbjct: 56  AARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTD 115
Query: 121 SFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSV 180
           +      +LQKE   RL+A P    + RL+V  +   +V  V++V    F P PKVDS+V
Sbjct: 116 AIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAV 175
Query: 181 VIIRPKAEIPDVNLDEWRAFTRT---CFSKKNKTL 212
           V + P A +P   + + R  +R     F+++ KT+
Sbjct: 176 VRLVPHATMPH-PVKDVRVLSRITTEAFNQRRKTI 209

>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase Length = 244

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/207 (29%), Positives = 110/207 (53%), Gaps = 12/207 (5%)
Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
            Q+ +T++  +D I+    +N  D + EIG G G+ TL+L++    V AIEID ++ +  
Sbjct: 9   SQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTT 68
Query: 69  NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSAT 126
             +  D   HD   V++KD L+ +FP  Q   +  NIPY IS+ ++ K+V+ + +     
Sbjct: 69  ENKLVD---HDNFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSIA-DEIY 124
Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV-IIRP 185
           L+++  FA+RLL +        LA+ +    D+  +  V +  F P PKV+SS++ + R 
Sbjct: 125 LIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRK 179
Query: 186 KAEIPDVNLDEWRAFTRTCFSKKNKTL 212
           K+ I   +  ++  F     +K+ K +
Sbjct: 180 KSRISHKDKQKYNYFVMKWVNKEYKKI 206

>pdb|1YUB|A Chain A, Solution Structure Of An Rrna Methyltransferase (Ermam) That Confers Macrolide-Lincosamide-Streptogramin Antibiotic Resistance, Nmr, Minimized Average Structure Length = 245

Iteration: 1
 Score = 90.1 bits (222), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 113/197 (57%), Gaps = 17/197 (8%)
Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
            Q+ LT+++VL+ I+++ ++   DTV EIG G G+LT KL ++SK+V +IE+D  +    
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHL---F 64
Query: 69  NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSAT 126
           N  +     + R+ +I +D L+ +FP  Q   +V NIPY +S+ ++ K+V+ +++     
Sbjct: 65  NLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRA-SDIY 123
Query: 127 LLLQKEFARRLLASPGDSEFNR-LAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV-IIR 184
           L++++ F +R L      + +R L + +     ++ ++ +    F P PKV+S ++ + R
Sbjct: 124 LIVEEGFYKRTL------DIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTR 177
Query: 185 PKAEIPDVNLDEWRAFT 201
              ++PD     W+ +T
Sbjct: 178 HTTDVPD---KYWKLYT 191

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	232
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	1e-106
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	1e-103
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	7e-80
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	9e-67
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	1e-66
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	2e-66
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	2e-65
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	1e-64
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	4e-63
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	6e-63
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	2e-44
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	8e-14
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	8e-14
3f4k_A	257	Putative methyltransferase; structural genomics, P	7e-13
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	2e-12
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	5e-12
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	8e-12
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	1e-11
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	2e-11
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	2e-11
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	3e-11
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	4e-11
3i9f_A	170	Putative type 11 methyltransferase; structural gen	5e-11
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-10
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	2e-10
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	2e-10
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	4e-10
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	5e-10
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	5e-10
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-10
1xxl_A	239	YCGJ protein; structural genomics, protein structu	7e-10
3ege_A	261	Putative methyltransferase from antibiotic biosyn	1e-09
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-09
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	2e-09
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-09
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	2e-09
3lpm_A	259	Putative methyltransferase; structural genomics, p	3e-09
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	4e-09
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	4e-09
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	4e-09
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	4e-09
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	4e-09
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	4e-09
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	9e-09
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	1e-08
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	1e-08
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	2e-08
2p7i_A	250	Hypothetical protein; putative methyltransferase,	3e-08
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	4e-08
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	6e-08
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	7e-08
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	9e-08
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	1e-07
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	2e-07
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	3e-07
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	3e-07
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	3e-07
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	3e-07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	3e-07
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	3e-07
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	4e-07
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	6e-07
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	6e-07
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	7e-07
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	7e-07
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	8e-07
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	1e-06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	2e-06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	2e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	2e-06
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	2e-06
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	2e-06
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	2e-06
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	3e-06
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	3e-06
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	3e-06
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	4e-06
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	4e-06
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	5e-06
3cc8_A	230	Putative methyltransferase; structural genomics, j	6e-06
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	6e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	6e-06
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	7e-06
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	7e-06
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	8e-06
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	1e-05
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	1e-05
2qm3_A	373	Predicted methyltransferase; putative methyltransf	1e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	1e-05
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	1e-05
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-05
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	2e-05
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	2e-05
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	3e-05
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	3e-05
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	4e-05
3lcc_A	235	Putative methyl chloride transferase; halide methy	4e-05
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	4e-05
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	4e-05
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	5e-05
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	5e-05
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	6e-05
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	6e-05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	6e-05
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	7e-05
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	7e-05
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	8e-05
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	9e-05
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	9e-05
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	1e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	1e-04
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	1e-04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	2e-04
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	2e-04
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	2e-04
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	2e-04
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	3e-04
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	3e-04
3ll7_A	410	Putative methyltransferase; methytransferase, stru	3e-04
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	3e-04
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	4e-04
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	4e-04
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	5e-04
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	5e-04
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	6e-04
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	7e-04
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	7e-04
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	7e-04
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	8e-04

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 Length = 285

 Score =  308 bits (791), Expect = e-106
 Identities = 106/221 (47%), Positives = 142/221 (64%)

Query: 5   HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
           +   GQHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D R+
Sbjct: 3   NTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRL 62

Query: 65  VEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRS 124
           V  L++R   +    +L V+  D LKT+ P FD  VAN+PY ISSP V KL+     FR 
Sbjct: 63  VAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRC 122

Query: 125 ATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIR 184
           A L+ Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV I 
Sbjct: 123 AILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIE 182

Query: 185 PKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
           PK   P +N  EW    R  F +KNKTL A FK       L
Sbjct: 183 PKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL 223

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} Length = 299

 Score =  300 bits (769), Expect = e-103
 Identities = 106/228 (46%), Positives = 140/228 (61%), Gaps = 1/228 (0%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
               +GQH+L N  +LD I+  + I   D VLEIG GTGNLT+KLL ++KKV  I+ID R
Sbjct: 16  NLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSR 75

Query: 64  MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFR 123
           M+  + +R    G ++ L V   DA+KT FP+FD+  ANIPY ISSPL+ KL+     F+
Sbjct: 76  MISEVKKRCLYEG-YNNLEVYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFK 134

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
            A L+ QKEFA R+LA+ GDS ++RL +NVKL   V  V +V++  F P PKVDS +V +
Sbjct: 135 CAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKL 194

Query: 184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRLSKQ 231
            PK      N DEW    R CFS+K KTL A FK+   +  L    K 
Sbjct: 195 IPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRNAVLNMLEHNYKN 242

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* Length = 295

 Score =  240 bits (615), Expect = 7e-80
 Identities = 79/227 (34%), Positives = 122/227 (53%), Gaps = 8/227 (3%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
               K  GQ  L ++  ++  V  +++  DD VLEIG G G LT +L + +KKV+ IEID
Sbjct: 22  FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEID 81

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL--VVANIPYGISSPLVAKLVYGT 119
           + +    N+       ++ + +I  DALK +  + D   VVAN+PY ISSP+  KL+   
Sbjct: 82  KSLEPYANKLKEL---YNNIEIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLI--K 136

Query: 120 KSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSS 179
           + F  A L+ Q EFA+R++A+ G  ++ RL+V V+  ADVE V  V    F P PKV S+
Sbjct: 137 RGFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSA 196

Query: 180 VVIIRPKAEIPDV-NLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
           +V I+P      + N + +  F R  F  +NK++        K +  
Sbjct: 197 IVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALIDSSKELNY 243

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} Length = 255

 Score =  205 bits (525), Expect = 9e-67
 Identities = 68/235 (28%), Positives = 106/235 (45%), Gaps = 12/235 (5%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +   K  GQH L +  VL  IV        DT++EIGPG G LT  LL     +  +EID
Sbjct: 1   MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEID 60

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL-----VVANIPYGISSPLVAKLV 116
             +V  L ++         + +   DAL+ +F          VV N+PY IS+PL+  L 
Sbjct: 61  RDLVAFLQKKYNQ---QKNITIYQNDALQFDFSSVKTDKPLRVVGNLPYNISTPLLFHLF 117

Query: 117 YGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKV 176
                      +LQKE  RR+ A  G  ++ RL+V  +   D  ++  VS + F P P+V
Sbjct: 118 SQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRV 177

Query: 177 DSSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFKQKKKVIELLRL 228
           +S+++ + P+     V  +         +  FS + KT+G   K+     +   L
Sbjct: 178 ESAIIRLIPRHNFTPVAKNL-DQLSHVVKEAFSYRRKTVGNALKKLINPSQWPLL 231

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A Length = 244

 Score =  204 bits (522), Expect = 1e-66
 Identities = 61/224 (27%), Positives = 109/224 (48%), Gaps = 16/224 (7%)

Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
               Q+ +T++  +D I+    +N  D + EIG G G+ TL+L++    V AIEID ++ 
Sbjct: 6   IKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLC 65

Query: 66  EILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKSFR 123
           +    +  D   HD   V++KD L+ +FP+     +  NIPY IS+ ++ K+V+      
Sbjct: 66  KTTENKLVD---HDNFQVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVF-DSIAD 121

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
              L+++  FA+RLL +        LA+ +    D+  +  V +  F P PKV+SS++ +
Sbjct: 122 EIYLIVEYGFAKRLLNTKR-----SLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRL 176

Query: 184 RPKAE-IPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELL 226
             K   I   +  ++  F     +K+ K +      K +    L
Sbjct: 177 NRKKSRISHKDKQKYNYFVMKWVNKEYKKI----FTKNQFNNSL 216

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Length = 252

 Score =  204 bits (522), Expect = 2e-66
 Identities = 65/218 (29%), Positives = 101/218 (46%), Gaps = 12/218 (5%)

Query: 10  QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
           Q+ L +Q V+DSIV   +      ++EIGPG   LT  + E   ++  IE+D  +   L 
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 70  RRAADSGFHDRLNVISKDALKTEFPQFDL-------VVANIPYGISSPLVAKLVYGTKSF 122
                     +L +  +DA+   F +          V  N+PY IS+PL+  L   T + 
Sbjct: 61  THPFL---GPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAI 117

Query: 123 RSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVI 182
                +LQKE   RL+A P    + RL+V  +   +V  V++V    F P PKVDS+VV 
Sbjct: 118 ADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVR 177

Query: 183 IRPKAEIPDVNLDEWRAF--TRTCFSKKNKTLGATFKQ 218
           + P A +P    D       T   F+++ KT+  +   
Sbjct: 178 LVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGN 215

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 Length = 245

 Score =  202 bits (515), Expect = 2e-65
 Identities = 55/226 (24%), Positives = 116/226 (51%), Gaps = 13/226 (5%)

Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMV 65
               Q+ LT+++VL+ I+++ ++   DTV EIG G G+LT KL ++SK+V +IE+D  + 
Sbjct: 5   IKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLF 64

Query: 66  EILNRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKSFR 123
            + + +      + R+ +I +D L+ +FP      +V NIPY +S+ ++ K+V+      
Sbjct: 65  NLSSEKLKL---NTRVTLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVF-ESRAS 120

Query: 124 SATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVII 183
              L++++ F +R L          L + +     ++ ++ +    F P PKV+S ++ +
Sbjct: 121 DIYLIVEEGFYKRTLDIHR-----TLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKL 175

Query: 184 RPK-AEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIELLRL 228
                ++PD     +  F     +++ + L  T  Q  + ++  ++
Sbjct: 176 TRHTTDVPDKYWKLYTYFVSKWVNREYRQL-FTKNQFHQAMKHAKV 220

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Length = 279

 Score =  200 bits (512), Expect = 1e-64
 Identities = 66/240 (27%), Positives = 113/240 (47%), Gaps = 21/240 (8%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIE 59
             K  GQ+ L +  V+D+IV        + ++EIGPG G LT  ++         +HA+E
Sbjct: 16  ARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVE 75

Query: 60  IDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDL--------VVANIPYGISSPL 111
           +D  ++  L +R     F + L + + DAL  +F             ++ N+PY ISSPL
Sbjct: 76  LDRDLIGRLEQR-----FGELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPL 130

Query: 112 VAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFL 171
           +  L+           +LQ E   R++A PG   F+RL+V ++    ++ ++DV    F 
Sbjct: 131 LFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPESFQ 190

Query: 172 PCPKVDSSVVIIRPKAEIPDVNLDEWRAF---TRTCFSKKNKTLGATFKQKKKVIELLRL 228
           P PKVDS++V + P A   ++   +           FS++ K L  T    + +++   L
Sbjct: 191 PPPKVDSAIVRMIPHAP-HELPAVDPAVLGEVVTAAFSQRRKMLRNTLGGYRDLVDFDAL 249

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Length = 271

 Score =  196 bits (502), Expect = 4e-63
 Identities = 71/219 (32%), Positives = 103/219 (47%), Gaps = 12/219 (5%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
           +F  K  GQ+ L ++  L  IV  +       V E+GPG G LT  LLE   +V AIE D
Sbjct: 19  LFADKRFGQNFLVSEAHLRRIVEAARPFTGP-VFEVGPGLGALTRALLEAGAEVTAIEKD 77

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVYG 118
            R+  +L    +       + ++ +DAL   + +     L+VAN+PY I++PLV +L+  
Sbjct: 78  LRLRPVLEETLS----GLPVRLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLL-K 132

Query: 119 TKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDS 178
           T  F     L+QKE A R+ A P    +  L + V   A  E + D+    F P PKV S
Sbjct: 133 TGRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWS 192

Query: 179 SVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFK 217
           S+V + P   + D  L          F K+ KTL     
Sbjct: 193 SLVRLTPTGALDDPGL---FRLVEAAFGKRRKTLLNALA 228

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Length = 249

 Score =  195 bits (499), Expect = 6e-63
 Identities = 76/222 (34%), Positives = 115/222 (51%), Gaps = 12/222 (5%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEI 60
           +   KS GQH+L ++ VL  I  + +I   +TV+E+G GTGNLT  LL+   KK++ IE+
Sbjct: 3   VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIEL 62

Query: 61  DERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD---LVVANIPYGISSPLVAKLVY 117
           D  MVE L          +RL VI++DA K  F        VV N+PY ++S ++   VY
Sbjct: 63  DREMVENLKSI-----GDERLEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVY 117

Query: 118 GTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVD 177
                  A  ++QKE A +L    G  +   L+V V+   DV +VM V  R F+P PKV 
Sbjct: 118 NKDCVPLAVFMVQKEVAEKL---QGKKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQ 174

Query: 178 SSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQK 219
           S+V+ +    + P  +L  ++ F    F  + K L     ++
Sbjct: 175 SAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPEE 216

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 Length = 353

 Score =  151 bits (382), Expect = 2e-44
 Identities = 45/272 (16%), Positives = 79/272 (29%), Gaps = 64/272 (23%)

Query: 5   HKSKGQHILTNQRVLDSIVRKSSINP------DDTVLEIGPGTGNLTLKLLEVS--KKVH 56
               G   L N  V + I  K  +        +  VL++ PG G  +         ++  
Sbjct: 27  KFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYS 86

Query: 57  AIEIDERMVEILNRRAADSGFHDRLNVISKDALK---------------TEFPQFD---- 97
            +E    + + LN +         L ++ +D                   E    D    
Sbjct: 87  LLEKRSSLYKFLNAKFEG----SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHIND 142

Query: 98  --LVVANIPYGISSPLVAKLVYGTKSFRSA--------TLLLQKEFARRLLASPGDSEFN 147
             L VAN+    S  L+ + +    +             L +    AR+LLA PG    +
Sbjct: 143 KFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGMHSRS 202

Query: 148 RLAVNVKLVADVEFV---------------------MDVSKRDFLPCPKVDSSVVIIRPK 186
           + +V  +   D + +                     +  S  +  P      ++V + P 
Sbjct: 203 KCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPI 262

Query: 187 AEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
               D  +D W   TR     K   L      
Sbjct: 263 DFDFD--VDNWDYVTRHLMILKRTPLNTVMDS 292

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 67.2 bits (164), Expect = 8e-14
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 17  RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG 76
              + I+          VLE G GTGNLT KLL   + V+ IE    M  I   +     
Sbjct: 32  AHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP--- 88

Query: 77  FHDRLNVISKDALKTEFP-QFDLVVAN 102
                ++   D L  E P   D +V+ 
Sbjct: 89  --KEFSITEGDFLSFEVPTSIDTIVST 113

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 68.0 bits (166), Expect = 8e-14
 Identities = 24/103 (23%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 3   FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEID 61
           FF   + Q   + +  L ++    ++     + +IG GTG  T+ L   V+ +V  ++  
Sbjct: 19  FFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFL 78

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
              ++I NR A  SG  +R+  I        F   + DL+ + 
Sbjct: 79  SGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSE 121

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 64.9 bits (158), Expect = 7e-13
 Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDR 80
           +   + +  D  + +IG GTG  TL L + V  ++  I++    +EI N  A  +   DR
Sbjct: 38  VSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADR 97

Query: 81  LNVISKDALKTEFP--QFDLVVAN 102
           +  I+       F   + DL+ + 
Sbjct: 98  VKGITGSMDNLPFQNEELDLIWSE 121

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 16  QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAAD 74
            R+ D ++    +   D VL++G G G   ++L      +V  I I    V   N RA  
Sbjct: 47  DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATA 106

Query: 75  SGFHDRLNVISKDALKTEFP--QFDLVVA 101
           +G  +R+     DA+   F    FD V A
Sbjct: 107 AGLANRVTFSYADAMDLPFEDASFDAVWA 135

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 62.1 bits (151), Expect = 5e-12
 Identities = 21/86 (24%), Positives = 42/86 (48%), Gaps = 4/86 (4%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFH 78
           ++I+ +  I    T ++IG G G L++ L +     + A++  + M EI  +  AD+  +
Sbjct: 34  ENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLN 92

Query: 79  DRLNVISKDALKTEFP--QFDLVVAN 102
           DR+ ++  D           DL+V+ 
Sbjct: 93  DRIQIVQGDVHNIPIEDNYADLIVSR 118

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 62.2 bits (151), Expect = 8e-12
 Identities = 19/108 (17%), Positives = 39/108 (36%), Gaps = 7/108 (6%)

Query: 1   YIFFHKSKGQHILTNQ--RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVH 56
           Y+  +  +    L+ Q   +   +   +   P   VLE G G G  T+ L + +   ++ 
Sbjct: 6   YVHGYSEREALRLSEQAETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEIT 65

Query: 57  AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
           +I+I    +E        +G    +  +  +     F    FD +   
Sbjct: 66  SIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFEDSSFDHIFVC 112

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 61.7 bits (150), Expect = 1e-11
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 2/85 (2%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
             ++ R   + P   +L++G G+G +              I++         RRA + G 
Sbjct: 25  YATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGV 84

Query: 78  HDRLNVISKDALKTEFP-QFDLVVA 101
            +R++ I  DA       + D+   
Sbjct: 85  SERVHFIHNDAAGYVANEKCDVAAC 109

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 61.4 bits (149), Expect = 2e-11
 Identities = 12/95 (12%), Positives = 30/95 (31%), Gaps = 3/95 (3%)

Query: 11  HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILN 69
            + T++ +   +     +      L++G G G     L+      +  + I     +   
Sbjct: 63  SLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE 122

Query: 70  RRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
                +G  D + V     L+       +D + + 
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ 157

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192

 Score = 59.7 bits (145), Expect = 2e-11
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
              +D  +++G GTG +TL+L    ++V+AI+ +   +          G  D + ++  D
Sbjct: 31  PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGD 90

Query: 88  ALKT--EFPQFDLVVANI 103
           A +   + P  D+ V   
Sbjct: 91  APEALCKIPDIDIAVVGG 108

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 60.1 bits (146), Expect = 3e-11
 Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 4   FHKSKGQHILTNQRVL----DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVH 56
           F  SK + +    R+     + ++++  +    TVL++G G G     L ++     KV+
Sbjct: 7   FDPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVY 66

Query: 57  AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
           AI++ E MV     +    G    + V+  +  K   P    D +   
Sbjct: 67  AIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIPLPDNTVDFIFMA 113

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
            +   LE+G GTG + L L+    +  A++ D  M+E+  ++ A      ++ V+  DA 
Sbjct: 39  EEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVD--RKVQVVQADAR 96

Query: 90  KTEFP--QFDLVVAN 102
               P      V+  
Sbjct: 97  AIPLPDESVHGVIVV 111

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 12/85 (14%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
           +  +          +++ G G G     LLE + K++ I+I+   ++ +           
Sbjct: 7   EEYLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKE--------- 57

Query: 80  RLNVISKDALKTEFP--QFDLVVAN 102
           + + +   +   E P    D ++  
Sbjct: 58  KFDSVITLSDPKEIPDNSVDFILFA 82

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 58.9 bits (142), Expect = 1e-10
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
           + P   V  +  G  +  L L   +    ++  I+ D   ++   R AA      ++ + 
Sbjct: 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLH 175

Query: 85  SKDALKTEFP-QFDLVVAN 102
            +DA K +    +DL+ +N
Sbjct: 176 RQDAWKLDTREGYDLLTSN 194

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 58.1 bits (140), Expect = 2e-10
 Identities = 12/78 (15%), Positives = 27/78 (34%), Gaps = 8/78 (10%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
           + P   VLE G G G    +    + +  A +    ++++    A  +  ++        
Sbjct: 46  LTPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEW-----NG 100

Query: 88  ALKTEFP---QFDLVVAN 102
             +        F L+V+ 
Sbjct: 101 KGELPAGLGAPFGLIVSR 118

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF 77
              I+    +N +  VL+IG G G   + + E      H I+I   +V + N R + +  
Sbjct: 44  TKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN-- 101

Query: 78  HDRLNVISKDALKTEFP--QFDLVVA 101
            +++   + D L  EFP   FDL+ +
Sbjct: 102 -NKIIFEANDILTKEFPENNFDLIYS 126

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 57.6 bits (139), Expect = 4e-10
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF--HDRLNVISK 86
                VLE+  G G LT   L++  +V A+E+   ++    +R A++     DR  ++  
Sbjct: 81  PVSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQG 140

Query: 87  DALKTEFP-QFDLVV 100
           D        +F  VV
Sbjct: 141 DMSAFALDKRFGTVV 155

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 25  KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
              +     VL++  G G  +  L +   +V  ++I E M+      A        +  I
Sbjct: 33  MKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFI 90

Query: 85  SKDALKTEFP--QFDLVVA 101
             DA K  F    FD V+ 
Sbjct: 91  VGDARKLSFEDKTFDYVIF 109

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 15  NQRVLDSIVRK-------SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
           +Q + DS  R          +  +  VL++G G G  T KL     K   ++I E M++ 
Sbjct: 31  SQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQK 90

Query: 68  LNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
              R         L+ I  D     F   QF+ ++A 
Sbjct: 91  GKERGE----GPDLSFIKGDLSSLPFENEQFEAIMAI 123

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 56.9 bits (137), Expect = 6e-10
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 11  HILTNQRVLDSIVRKS-SINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVE 66
            +  N   +  +V     I     +++ G G G L L L+ +     K   I+  E ++ 
Sbjct: 2   DLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLA 61

Query: 67  ILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102
                     +      +  DA + E   ++D+ + +
Sbjct: 62  EARELFRLLPY--DSEFLEGDATEIELNDKYDIAICH 96

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 56.3 bits (136), Expect = 7e-10
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 3/86 (3%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
           L  +++ +    +  VL+IG G G+  L      ++   ++  + MVE+ +  A + G  
Sbjct: 10  LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKG-V 68

Query: 79  DRLNVISKDALKTEFP--QFDLVVAN 102
           + +      A    FP   FD++   
Sbjct: 69  ENVRFQQGTAESLPFPDDSFDIITCR 94

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261

 Score = 56.1 bits (135), Expect = 1e-09
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 9/88 (10%)

Query: 17  RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG 76
           R++++I+   ++     + +IG GTG  ++ L      V+A+E    M +          
Sbjct: 21  RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP---- 76

Query: 77  FHDRLNVISKDALKTEFP--QFDLVVAN 102
              ++   +  A     P    D V++ 
Sbjct: 77  ---QVEWFTGYAENLALPDKSVDGVISI 101

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHD 79
           +   S    +  +L++G GTG L+  L+E         +++ E+M+EI   R      + 
Sbjct: 36  VSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG---NL 92

Query: 80  RLNVISKDALKTEFPQ-FDLVVAN 102
           ++  I  D  K +F + +D+VV+ 
Sbjct: 93  KVKYIEADYSKYDFEEKYDMVVSA 116

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 5/77 (6%)

Query: 28  INPDDTVLEIGPGTGNLTLKLL-EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
            N D TVL+ G G     L +  E   K + IEI +  ++     + ++ F  +LN+   
Sbjct: 21  SNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNISKG 78

Query: 87  DALKTEFP--QFDLVVA 101
           D  K  F       V +
Sbjct: 79  DIRKLPFKDESMSFVYS 95

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 55.2 bits (133), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
           ++ I ++ +      VL++  GTG  TL+L E   +V  +++ E M+ +  R+A +    
Sbjct: 30  VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK 89

Query: 79  DRLNVISKDALKTEFP-QFDLVV 100
             +  +  D L+  F  +FD V 
Sbjct: 90  --IEFLQGDVLEIAFKNEFDAVT 110

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 4/74 (5%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
                LEIG   G  T KL    K++  I++  R +    +R         ++  + D L
Sbjct: 51  AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR---WSHISWAATDIL 107

Query: 90  KTEFP-QFDLVVAN 102
           +      FDL+V  
Sbjct: 108 QFSTAELFDLIVVA 121

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 54.4 bits (131), Expect = 3e-09
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 5/82 (6%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
                ++++  G G + L L      K+  +EI ER+ ++  R  A +   D++ +I  D
Sbjct: 48  IRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYD 107

Query: 88  --ALKTEFP--QFDLVVANIPY 105
              +    P  + D+V  N PY
Sbjct: 108 LKKITDLIPKERADIVTCNPPY 129

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298

 Score = 54.8 bits (131), Expect = 4e-09
 Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 3/74 (4%)

Query: 28  INPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
               +  + IG G   LT  LL      +V+ +EI+  + E+  +     G  D +NVI+
Sbjct: 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVIT 178

Query: 86  KDALKTEFPQFDLV 99
            D    +  +FD++
Sbjct: 179 GDETVIDGLEFDVL 192

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 16  QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75
            +  + +++  +  P + +L++G GTG LT K+ +   +V   +    M+E   +     
Sbjct: 43  WQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHL 102

Query: 76  GFHDRLNVISKDALKTEFPQ-FDLVVAN 102
            F         DA      +  D V +N
Sbjct: 103 HFDVA------DARNFRVDKPLDAVFSN 124

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} Length = 204

 Score = 53.7 bits (129), Expect = 4e-09
 Identities = 12/80 (15%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 25  KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
             +    + + +IG G+G+++++      +   IE     +E + +     G   R+  +
Sbjct: 50  ALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAV 109

Query: 85  SKDALK--TEFPQFDLVVAN 102
              A     + P  + V   
Sbjct: 110 QGTAPAALADLPLPEAVFIG 129

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 17/84 (20%), Positives = 42/84 (50%), Gaps = 3/84 (3%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
           L  +++ +++  ++ VL++  G G++        KKV A ++ E ++++       +G H
Sbjct: 26  LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNG-H 84

Query: 79  DRLNVISKDALKTEFP--QFDLVV 100
            ++  +  DA +  F   +F +V 
Sbjct: 85  QQVEYVQGDAEQMPFTDERFHIVT 108

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 53.8 bits (129), Expect = 4e-09
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
               VLE+  GTG  T  L  ++ +V A++    M+    R        D +    +D  
Sbjct: 46  IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHG-----LDNVEFRQQDLF 100

Query: 90  KTEFP-QFDLVVAN 102
                 Q+D V   
Sbjct: 101 DWTPDRQWDAVFFA 114

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241

 Score = 54.2 bits (130), Expect = 4e-09
 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 2/95 (2%)

Query: 14  TNQRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRA 72
           T +++ + I  + S     D V++   G G  T++      +V AI+ID   + +    A
Sbjct: 61  TPEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNA 120

Query: 73  ADSGFHDRLNVISKDALK-TEFPQFDLVVANIPYG 106
              G  D++  I  D L    F + D+V  + P+G
Sbjct: 121 EVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Length = 421

 Score = 53.9 bits (129), Expect = 9e-09
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 6   KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDE 62
           +S G+   T   V+D +V  +       VLE     G       E    + +   +EID 
Sbjct: 16  RSLGRV-ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDP 74

Query: 63  RMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYG 106
           + +++                I  D L  E    FDL++ N PYG
Sbjct: 75  KALDL----------PPWAEGILADFLLWEPGEAFDLILGNPPYG 109

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
           + P+D +L +G G   L+ +L       V +++    +V  +    A      +L   + 
Sbjct: 40  LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETM 96

Query: 87  DALKTEFP--QFDLVV 100
           D  K +FP   FD+V+
Sbjct: 97  DVRKLDFPSASFDVVL 112

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 52.7 bits (126), Expect = 1e-08
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
            NP+  +++   G G  T  L +   +V  +++ +  +EI  +    +    RL      
Sbjct: 54  FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVP 113

Query: 88  ALKTEFP--QFDLVV 100
               +      D  +
Sbjct: 114 EQAAQIHSEIGDANI 128

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 51.8 bits (124), Expect = 2e-08
 Identities = 18/87 (20%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 25  KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRL 81
           K  +   DTV++   G GN T  L  +   + +V   +I ++ +    ++  D    DR+
Sbjct: 17  KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRV 76

Query: 82  NVISKDALKTEFP---QFDLVVANIPY 105
            +I       +         V+ N+ Y
Sbjct: 77  TLIKDGHQNMDKYIDCPVKAVMFNLGY 103

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 51.4 bits (123), Expect = 3e-08
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 7/99 (7%)

Query: 6   KSKGQHILTNQRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
             K  +      +   +VR  +       +LE+G   G+ T +L E    +  +E  E  
Sbjct: 17  GHKYAYNFDFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 76

Query: 65  VEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN 102
           +     R       D +  I       + P ++D +V  
Sbjct: 77  ISHAQGR-----LKDGITYIHSRFEDAQLPRRYDNIVLT 110

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
             + VL++G G G L   L +   +   ++ D  +V+      A          +     
Sbjct: 52  QPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQL--AEA 109

Query: 90  KTEFPQ-FDLVVAN 102
           K    + +DL+ AN
Sbjct: 110 KVPVGKDYDLICAN 123

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 51.2 bits (122), Expect = 6e-08
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 14/93 (15%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDE------RMVEILNRRA 72
           I     + P + +LEIG G G+L+  L +    S  V  I+I          +       
Sbjct: 35  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHL 94

Query: 73  ADSGFHDRLNVISKDALKTE---FP--QFDLVV 100
                 DRL V     L  +        FD VV
Sbjct: 95  LAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVV 127

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 49.9 bits (119), Expect = 7e-08
 Identities = 15/54 (27%), Positives = 29/54 (53%)

Query: 25 KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
             ++ +  V++   G GN T  L  +SKKV+A ++ E+ +   ++R +D G  
Sbjct: 17 AEVLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIE 70

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260

 Score = 50.2 bits (120), Expect = 9e-08
 Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 9/79 (11%)

Query: 25  KSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
           +  +     VL++G GTG  +L L E   +V  ++  + M+E+   +          NV+
Sbjct: 49  EEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVK-------NVV 101

Query: 85  SKDALKTEFP--QFDLVVA 101
              A    FP   F+ V+A
Sbjct: 102 EAKAEDLPFPSGAFEAVLA 120

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
           +     ++++  D   L++  GTGNLT  L    K   A+++ + M+     +    G  
Sbjct: 27  IIEKCVENNLVFD-DYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL- 84

Query: 79  DRLNVISKDALKTEFP-QFDLVV 100
            +  +  +D        +FDL+ 
Sbjct: 85  -KPRLACQDISNLNINRKFDLIT 106

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 23  VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG----FH 78
           +  + +  DD +L+IG G+G ++L+L      V  I+I+   + +    A   G      
Sbjct: 23  IIHNYLQEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTG 82

Query: 79  DRLNVISKDALKTEFP--QFDLVV 100
            +     ++A    F    FD  V
Sbjct: 83  GKAEFKVENASSLSFHDSSFDFAV 106

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 49.0 bits (117), Expect = 3e-07
 Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
           + P   + +IG GTG  TL L +   +V  +++ E M+EI   +A ++  H  ++   +D
Sbjct: 31  VEPGKRIADIGCGTGTATLLLAD-HYEVTGVDLSEEMLEIAQEKAMETNRH--VDFWVQD 87

Query: 88  ALKTEFP-QFDLVV 100
             + E P   D + 
Sbjct: 88  MRELELPEPVDAIT 101

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
               ++L++  GTG       +       +E+ E M+    +R  D+  H        D 
Sbjct: 39  PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQ------GDM 92

Query: 89  LKTEFP-QFDLVV 100
                  +F  VV
Sbjct: 93  RDFRLGRKFSAVV 105

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 13/97 (13%)

Query: 8   KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
            G  I    R++D++           +L+ G G G +   L +    V   ++D  +++ 
Sbjct: 29  AGNDIYGEARLIDAMAP-----RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDY 83

Query: 68  LNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
             +   +         +  D    +     FDL+V+ 
Sbjct: 84  AKQDFPE------ARWVVGDLSVDQISETDFDLIVSA 114

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 14/80 (17%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISK 86
           ++ DD +L++G G G + + L +  K     +I+ R +++       +   +  + V+  
Sbjct: 50  VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHS 109

Query: 87  DALK-TEFPQFDLVVANIPY 105
           D  +  +  +++ ++ N P 
Sbjct: 110 DLYENVKDRKYNKIITNPPI 129

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 22/131 (16%), Positives = 41/131 (31%), Gaps = 16/131 (12%)

Query: 28  INPDDTVLEIGPGTGNLTLKLL-EVSK-KVHAIEIDERMVEILNRRAAD---SGFHDRLN 82
            +    + ++G G G   + +   + K +V   E  + M E   R       + F  R+ 
Sbjct: 34  DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIE 93

Query: 83  VISKDALKTEFP---------QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQK-- 131
           V+  D                 F  V+ N PY  +           ++      L +   
Sbjct: 94  VLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWI 153

Query: 132 EFARRLLASPG 142
             A  ++ S G
Sbjct: 154 RTASAIMVSGG 164

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
            D  +L++G GTG  T  L  +  ++  +E   R+VE+  +       H  +        
Sbjct: 41  VDGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT------HPSVTFHHGTIT 94

Query: 90  KTEFP--QFDLVVAN 102
                  ++  ++A 
Sbjct: 95  DLSDSPKRWAGLLAW 109

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 48.5 bits (115), Expect = 4e-07
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
           +     L+ G G G +T  LL  +      +E  + M+E   R  A          I   
Sbjct: 92  HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---MPVGKFILAS 148

Query: 88  ALKTEFP--QFDLVVAN 102
                 P   +DL+V  
Sbjct: 149 METATLPPNTYDLIVIQ 165

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 47.5 bits (113), Expect = 6e-07
 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81
           ++    +      L++G G G  +L L      V A + +   +  + R  +     D L
Sbjct: 24  VLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIEN-LDNL 82

Query: 82  NVISKDALKTEFP-QFDLVVANI 103
           +    D     F  Q+D +++ +
Sbjct: 83  HTRVVDLNNLTFDRQYDFILSTV 105

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 47.9 bits (114), Expect = 6e-07
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 7/73 (9%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
               ++L++  GTG     L +    V  +E+   M+ I  RR  D+           D 
Sbjct: 49  PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVL------HHGDM 102

Query: 89  LKTEFP-QFDLVV 100
                  +F  V 
Sbjct: 103 RDFSLGRRFSAVT 115

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 16  QRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAA 73
               + ++       PDDT+++ G G G   +        +V  + +     +  NRRA 
Sbjct: 102 SAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAR 161

Query: 74  DSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
           +    D +     + L T F          N
Sbjct: 162 ELRIDDHVRSRVCNMLDTPFDKGAVTASWNN 192

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 48.1 bits (114), Expect = 7e-07
 Identities = 11/96 (11%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADS 75
              ++ +        ++++G G G  TL++   L+  +++   ++   M++        S
Sbjct: 25  FYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS 84

Query: 76  GF-HDRLNVISKDALKTEFP--------QFDLVVAN 102
              +  ++     +   +F         + D++ A 
Sbjct: 85  PDTYKNVSFKISSSDDFKFLGADSVDKQKIDMITAV 120

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Length = 183

 Score = 46.8 bits (112), Expect = 8e-07
 Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 3  FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE 62
          F  +      +T + +    + K ++N DD V+++G G+G +T+++ +  K V+AI+  +
Sbjct: 10 FIRREGVP--ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLD 67

Query: 63 RMVEILNRRAADSGFHDRLNVISKDA 88
            +E+  +  A         +I   A
Sbjct: 68 GAIEVTKQNLAKFNI-KNCQIIKGRA 92

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 22/96 (22%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 10  QHILTNQRVLDSIVRK-SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
           +  L ++    S ++    + P+   +EIG GTG   + L    K    +E  ERM EI 
Sbjct: 26  RWFLVHRFAYLSELQAVKCLLPEGRGVEIGVGTGRFAVPL----KIKIGVEPSERMAEIA 81

Query: 69  NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN 102
            +R           V+   A         FD  +  
Sbjct: 82  RKRGVF--------VLKGTAENLPLKDESFDFALMV 109

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFH 78
           I+ +  + P   +LE+G G+GN++  +L        +  +E DE  ++      ++    
Sbjct: 102 IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 161

Query: 79  DRLNVISKDALKTEFPQ-FDLVVANIP 104
             +     D       Q +D V+A+IP
Sbjct: 162 GNVRTSRSDIADFISDQMYDAVIADIP 188

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
               ++++G G G       E  +  V  +++ E+M+        D+G          D 
Sbjct: 43  GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGIT----YERADL 98

Query: 89  LKTEFP--QFDLVVAN 102
            K   P   FDL  ++
Sbjct: 99  DKLHLPQDSFDLAYSS 114

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 13  LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNR 70
           L  QR ++ +V     +    V+++G G GNL   LL+ S  +++  +++  R +EI   
Sbjct: 13  LNQQR-MNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 71

Query: 71  RAADSGFHDR------LNVISKDALKTEFPQFDLVVANIPY 105
           R               L   +       F  +D        
Sbjct: 72  RLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVI 112

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 4/87 (4%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFH 78
           IV  + I+P D ++E G G+G LTL L  +     +V + EI E   ++       +GF 
Sbjct: 85  IVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFD 144

Query: 79  DRLNVISKDALK-TEFPQFDLVVANIP 104
           DR+ +  KD  +  E    D V+ ++P
Sbjct: 145 DRVTIKLKDIYEGIEEENVDHVILDLP 171

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 6/73 (8%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
               +LE+G G G     +L     V A +    +    +RR          + +     
Sbjct: 43  AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQL----- 97

Query: 90  KTEFPQFDLVVAN 102
                 +D V A+
Sbjct: 98  -DAIDAYDAVWAH 109

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 19/107 (17%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
           +     +L++G     L + LL+        A E+     +   +  ++ G   +++V  
Sbjct: 19  VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRL 78

Query: 86  KDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSF--RSATLLLQ 130
            + L   F + D +      G+   L+A ++           TL+LQ
Sbjct: 79  ANGLS-AFEEADNIDTITICGMGGRLIADILNNDIDKLQHVKTLVLQ 124

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 14/89 (15%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH- 78
             ++     +    VL++  GTG  ++ L+E    V +++  ++M++   +   +     
Sbjct: 47  AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEP 106

Query: 79  -------DRLNVISKDALKTEFPQFDLVV 100
                  +  N ++ D        FD V+
Sbjct: 107 AFDKWVIEEANWLTLDKDVPAGDGFDAVI 135

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 7/76 (9%)

Query: 30  PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA 88
              TVL++G G G   +   E  +KKV  I++ ERM+    R+         +    K  
Sbjct: 44  NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTS----PVVCYEQKAI 99

Query: 89  LKTEFP--QFDLVVAN 102
                    +++V+++
Sbjct: 100 EDIAIEPDAYNVVLSS 115

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 30/170 (17%), Positives = 54/170 (31%), Gaps = 32/170 (18%)

Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
              I   +R L  ++      P +++LE+G GTG    +L     +   +E  E M+ + 
Sbjct: 20  AYVIAEEERALKGLLP-----PGESLLEVGAGTGYWLRRLPY--PQKVGVEPSEAMLAVG 72

Query: 69  NRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPYGI---SSPLVA---------- 113
            RRA ++ +      +        FP   FD+V+      +                   
Sbjct: 73  RRRAPEATW------VRAWGEALPFPGESFDVVLLF--TTLEFVEDVERVLLEARRVLRP 124

Query: 114 --KLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEF 161
              LV G     S    L +    + +     + F        L+   E 
Sbjct: 125 GGALVVGVLEALSPWAALYRRLGEKGVLPWAQARFLAREDLKALLGPPEA 174

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 22/76 (28%), Positives = 34/76 (44%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
               VL++G G G LTL L  +  +V  +E D   V  L +    +    +      D  
Sbjct: 233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEA 292

Query: 90  KTEFPQFDLVVANIPY 105
            TE  +FD++V N P+
Sbjct: 293 LTEEARFDIIVTNPPF 308

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} Length = 480

 Score = 45.9 bits (108), Expect = 4e-06
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 18/160 (11%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
            +I++  +   D  VL++G G+G L+    +  ++K++A+E    M +        +   
Sbjct: 148 RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT 206

Query: 79  DRLNVISKDALKTEFP-QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRL 137
           DR+ VI     +   P Q D+++       S P+   L           +L     A++ 
Sbjct: 207 DRIVVIPGKVEEVSLPEQVDIII-------SEPMGYMLFNE-------RMLESYLHAKKY 252

Query: 138 LASPGDSEFNRLAVNVKLVADVEFVMDV-SKRDFLPCPKV 176
           L   G+       V++    D +  M+  +K +F   P  
Sbjct: 253 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSF 292

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 34  VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           V+  G G G  +           +V  I+ D   VE   R   D+G  DR+ +   D L 
Sbjct: 60  VVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG 119

Query: 91  T--EFPQFDLV 99
                   D++
Sbjct: 120 IAAGQRDIDIL 130

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 4   FHKSKGQHIL--TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID 61
            ++ K  H     N  +L  I ++        VL+IG  +G L   + E   +V  IE  
Sbjct: 9   LYEEKSGHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGTRVSGIEAF 63

Query: 62  ERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVAN 102
               E     A +   H  L  I    +  E  QFD V+  
Sbjct: 64  PEAAEQ----AKEKLDHVVLGDIETMDMPYEEEQFDCVIFG 100

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225

 Score = 44.9 bits (106), Expect = 6e-06
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
           ++    +L++G     L ++L+E    K   A E+ E   +   +     G  +++ V  
Sbjct: 13  VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRL 72

Query: 86  KDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSF--RSATLLLQ 130
            + L        + V  I  G+   L+A+++            L+LQ
Sbjct: 73  ANGLAAFEETDQVSVITIA-GMGGRLIARILEEGLGKLANVERLILQ 118

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 11/86 (12%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81
           +V  ++  P   +L +  G G     L  +  +V A++     +    + A + G   ++
Sbjct: 21  LVSVANQIPQGKILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KI 78

Query: 82  NVISKDALKTEFP--QFDLVVANIPY 105
             +  +    +     ++ +V+   +
Sbjct: 79  TTVQSNLADFDIVADAWEGIVSIFCH 104

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Length = 348

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 18/160 (11%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH 78
            +I++  +   D  VL++G G+G L+    +   +K++A+E    M +        +   
Sbjct: 40  RAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLT 98

Query: 79  DRLNVISKDALKTEFP-QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRL 137
           DR+ VI     +   P Q D+++       S P+   L           +L     A++ 
Sbjct: 99  DRIVVIPGKVEEVSLPEQVDIII-------SEPMGYMLFNE-------RMLESYLHAKKY 144

Query: 138 LASPGDSEFNRLAVNVKLVADVEFVMDV-SKRDFLPCPKV 176
           L   G+       V++    D +  M+  +K +F   P  
Sbjct: 145 LKPSGNMFPTIGDVHLAPFTDEQLYMEQFTKANFWYQPSF 184

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 44.6 bits (105), Expect = 7e-06
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 9/95 (9%)

Query: 16  QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAA 73
           QR L ++V          V+++G G GNL   LL+    +++  +++   ++E    R  
Sbjct: 16  QR-LGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLK 74

Query: 74  DSGFHDR------LNVISKDALKTEFPQFDLVVAN 102
                +       L   S       F  +D     
Sbjct: 75  IDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 44.7 bits (106), Expect = 8e-06
 Identities = 16/79 (20%), Positives = 34/79 (43%), Gaps = 4/79 (5%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
           +    VL++G G G L++     S   ++   ++    VE      A +G      V + 
Sbjct: 195 HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGE--VFAS 252

Query: 87  DALKTEFPQFDLVVANIPY 105
           +       +FD++++N P+
Sbjct: 253 NVFSEVKGRFDMIISNPPF 271

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
                 ++G G GN T  L +      +  I+ D+ M+E    R  +       N    D
Sbjct: 33  RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN------TNFGKAD 86

Query: 88  ALKTEFPQ-FDLVVAN 102
               +  Q  DL+ AN
Sbjct: 87  LATWKPAQKADLLYAN 102

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 4/92 (4%)

Query: 13  LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLT--LKLLEVSKKVHAIEIDERMVEILNR 70
           LT Q V    +   +  P +T+ +IG G+G++                EI E   E +  
Sbjct: 8   LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILS 67

Query: 71  RAADSGFHDRLNVISK--DALKTEFPQFDLVV 100
            A + G  DR+ V      A        D++ 
Sbjct: 68  NAINLGVSDRIAVQQGAPRAFDDVPDNPDVIF 99

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Length = 373

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 17/77 (22%), Positives = 38/77 (49%), Gaps = 8/77 (10%)

Query: 40  GTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-- 94
           G  +LT   L L  + K++  ++IDER+ + + + A + G+ + + + + D  K      
Sbjct: 180 GDDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY-EDIEIFTFDLRKPLPDYA 238

Query: 95  --QFDLVVANIPYGISS 109
             +FD  + + P  + +
Sbjct: 239 LHKFDTFITDPPETLEA 255

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 43.9 bits (103), Expect = 1e-05
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLL-EVSKKVHAIEIDERMVEILNRRAADSGFHDR 80
           +    +       L+ G G G +T +LL  + ++V  ++I E  +        + G    
Sbjct: 71  LREGPNKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRV 129

Query: 81  LNVISKDALKTEFP--QFDLVVAN 102
            N               +D++   
Sbjct: 130 RNYFCCGLQDFTPEPDSYDVIWIQ 153

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Length = 277

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 6/105 (5%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFH 78
           I     +   D +++ G G+G +   L        KV A E  E   ++        G  
Sbjct: 104 IAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI 163

Query: 79  DRLNV-ISKDALKTEFPQFDLVVANI--PYGISSPLVAKLVYGTK 120
           +R+ + +   +   +    D +  ++  P+         L  G +
Sbjct: 164 ERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALKGGGR 208

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 43.7 bits (104), Expect = 1e-05
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 15  NQRVLD------SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVE 66
           + + L        I  K+ +   +  LEIG G   +   + E     KV A E+DE   E
Sbjct: 34  HPKGLVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFE 93

Query: 67  ILNRRAADSGFHDRLNVISKDALKTEFPQ-FDLVVANIPYGISSPLVAKL 115
              R    +  + RL   +   +K      FD++ +  PY    PL   L
Sbjct: 94  YARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPPY-YDKPLGRVL 142

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 14/98 (14%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADS 75
           ++  +         TV ++G G+G L     KL   +K V A +I +  +      AA +
Sbjct: 54  IERAMV-----KPLTVADVGTGSGILAIAAHKLG--AKSVLATDISDESMTAAEENAALN 106

Query: 76  GFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVA 113
           G +D   +     L     +FDL+VANI   ++  L+ 
Sbjct: 107 GIYDIA-LQKTSLLADVDGKFDLIVANI---LAEILLD 140

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Length = 376

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 3/86 (3%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
           +++ +        TVL++G G+G L +   +  ++KV+A+E  + M +        +   
Sbjct: 53  NAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATK-MADHARALVKANNLD 111

Query: 79  DRLNVISKDALKTEFP-QFDLVVANI 103
             + VI         P + D++++  
Sbjct: 112 HIVEVIEGSVEDISLPEKVDVIISEW 137

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 13/79 (16%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
                 VL+IG G G       E   +   ++I+E M++             + NV+  D
Sbjct: 39  FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG---------KFNVVKSD 89

Query: 88  ALKTEFP----QFDLVVAN 102
           A++          D V+ +
Sbjct: 90  AIEYLKSLPDKYLDGVMIS 108

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 16/107 (14%), Positives = 42/107 (39%), Gaps = 5/107 (4%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
           I  ++ + +IG     L    ++   +    A E+ +   +   ++   SG  ++++V  
Sbjct: 19  ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRK 78

Query: 86  KDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSF--RSATLLLQ 130
            + L     + D +   +  G+   L+  ++    +       L+LQ
Sbjct: 79  GNGLA-VIEKKDAIDTIVIAGMGGTLIRTILEEGAAKLAGVTKLILQ 124

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Length = 349

 Score = 42.7 bits (100), Expect = 4e-05
 Identities = 17/87 (19%), Positives = 38/87 (43%), Gaps = 4/87 (4%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
           +S+     +  D  VL++G GTG L +   +  ++KV  IE    + +   +    +   
Sbjct: 56  NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD 114

Query: 79  DRLNVISKDALKTEFP--QFDLVVANI 103
             + +I     + E P  + D++++  
Sbjct: 115 HVVTIIKGKVEEVELPVEKVDIIISEW 141

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
           P    L  G G G+  + +    + V  ++I E  +   N     S   +  + + +D  
Sbjct: 66  PLGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVF 125

Query: 90  KTEFP-QFDLVVA 101
                  FDL+  
Sbjct: 126 TWRPTELFDLIFD 138

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 21  SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGF 77
           +++R +   P   VL+   G+G + L+          V+A ++DE+ + +    A  SG 
Sbjct: 194 ALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGL 253

Query: 78  HDRLNVISKDALKTEFP--QFDLVVANIPYGIS 108
              +  +  DA        + D ++AN P+G+ 
Sbjct: 254 -SWIRFLRADARHLPRFFPEVDRILANPPHGLR 285

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Length = 248

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 2/85 (2%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL 81
           I  K ++N +  VLE G G+G L   L EV+ +V   E  E   +   +          +
Sbjct: 83  IALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNV 142

Query: 82  NVISKDALKTEFPQ--FDLVVANIP 104
              + D    E P+  F     ++ 
Sbjct: 143 KFFNVDFKDAEVPEGIFHAAFVDVR 167

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 42.1 bits (100), Expect = 5e-05
 Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 4/81 (4%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
               TV +IG G+G + + + + S   V A ++  + VEI  + A   G  DR  V   +
Sbjct: 122 YGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGE 181

Query: 88  ---ALKTEFPQFDLVVANIPY 105
                K +F   +++++N PY
Sbjct: 182 FLEPFKEKFASIEMILSNPPY 202

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 42.9 bits (100), Expect = 5e-05
 Identities = 14/97 (14%), Positives = 34/97 (35%), Gaps = 11/97 (11%)

Query: 16  QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRA 72
           QR ++  ++    +   T+++ G G+G+L   LL+     + +  ++I  + +    +  
Sbjct: 708 QR-VEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKML 766

Query: 73  ADSGFHDRLNVISKDALKT-------EFPQFDLVVAN 102
                 +  NV S                  D+    
Sbjct: 767 HVKLNKEACNVKSATLYDGSILEFDSRLHDVDIGTCL 803

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} Length = 204

 Score = 41.8 bits (98), Expect = 6e-05
 Identities = 12/98 (12%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHD 79
            + K  +  D  + +IG G+ +++++   +  + ++ A+E + + +  +           
Sbjct: 32  TLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-R 90

Query: 80  RLNVISKDALKT--EFPQFDLVVANIPYGISSPLVAKL 115
            + ++   A +   + P  D V      G+   ++  +
Sbjct: 91  NVTLVEAFAPEGLDDLPDPDRVFIGGSGGMLEEIIDAV 128

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232

 Score = 41.8 bits (99), Expect = 6e-05
 Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 34  VLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
           +LEIG   G  +++   +S    V  IE +E M++   +  A   F +++ +I  +AL+ 
Sbjct: 75  ILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ 134

Query: 92  ----EFPQFDLV 99
                   +D++
Sbjct: 135 FENVNDKVYDMI 146

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 7/73 (9%)

Query: 34  VLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT 91
           +LEIG   G   +++ +      + +IE DER  E  ++     G   R+ ++  DAL+ 
Sbjct: 58  ILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQL 117

Query: 92  -----EFPQFDLV 99
                 +P FD++
Sbjct: 118 GEKLELYPLFDVL 130

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Length = 344

 Score = 42.0 bits (99), Expect = 7e-05
 Identities = 12/89 (13%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSKK-------VHAIEIDERMVEILNRRAADSGFHD-R 80
             + ++L+   GT NL   ++   +           +++D+ +   ++     +     +
Sbjct: 129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLL---ISLALVGADLQRQK 185

Query: 81  LNVISKDAL-KTEFPQFDLVVANIPYGIS 108
           + ++ +D L        D+V++++P G  
Sbjct: 186 MTLLHQDGLANLLVDPVDVVISDLPVGYY 214

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Length = 258

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH 78
           +V    + P   VLE G G+G LTL L         V + E     +    R        
Sbjct: 88  MVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV 147

Query: 79  DRLNVISKDALKTEFPQ--FDLVVANIP 104
           + +        + E  +  +D V  ++ 
Sbjct: 148 ENVRFHLGKLEEAELEEAAYDGVALDLM 175

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248

 Score = 41.5 bits (98), Expect = 8e-05
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 8/74 (10%)

Query: 34  VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           +LEIG   G  T+ +        ++  +E D    ++       +G   R+ +    AL+
Sbjct: 67  ILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ 126

Query: 91  T-----EFPQFDLV 99
           +     E P FDL+
Sbjct: 127 SLESLGECPAFDLI 140

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280

 Score = 41.7 bits (97), Expect = 9e-05
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 7/90 (7%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEIL--NRRAADSG 76
           IV +  I P   VLE G G+G LTL LL     + +V + E      E    N       
Sbjct: 91  IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 150

Query: 77  FHDRLNVISKDALKTEFPQ--FDLVVANIP 104
             D   ++  D   +E P    D  V ++ 
Sbjct: 151 PPDNWRLVVSDLADSELPDGSVDRAVLDML 180

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232

 Score = 41.1 bits (97), Expect = 9e-05
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 34  VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           VLEIG   G   L +        ++ A + D     I  +    +G  +++++    AL 
Sbjct: 76  VLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA 135

Query: 91  T--------EFPQFDLV 99
           T          P+FDL+
Sbjct: 136 TLEQLTQGKPLPEFDLI 152

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 30  PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL 89
               VL++G G G  +L L  +   V + + +E  +  LN        +  ++    D  
Sbjct: 120 SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLN--ISTALYDIN 177

Query: 90  KTEFP-QFDLVVAN 102
                  +D +V+ 
Sbjct: 178 AANIQENYDFIVST 191

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 5/82 (6%)

Query: 29  NPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFH--DRLNVI 84
           N +  ++++G G G + L LL+ +   KV  ++     V         +     DR   +
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 280

Query: 85  SKDALKTEFP-QFDLVVANIPY 105
             +AL    P +F+ V+ N P+
Sbjct: 281 INNALSGVEPFRFNAVLCNPPF 302

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Length = 210

 Score = 40.6 bits (96), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
           + P   VLEIG G+G  T  L  + + V ++E  + +  
Sbjct: 75  LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQW 113

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 34  VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           V++IG  TG   + +         +   ++DE+   +       +G  D++ +    A  
Sbjct: 68  VIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD 127

Query: 91  T--------EFPQFDLV 99
           T        +  Q+DL+
Sbjct: 128 TLAELIHAGQAWQYDLI 144

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 19  LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
           L   +R     P D VL++G G+G L +   ++  K   ++ID  ++      A  +G  
Sbjct: 114 LARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR 168

Query: 79  DRLNVISKDALKTEFPQFDLVVANIPYGISSPLVA 113
            R    S +A     P FDL+VAN+    +    A
Sbjct: 169 PRFLEGSLEAALPFGP-FDLLVANL---YAELHAA 199

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 Length = 231

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 15/39 (38%), Positives = 23/39 (58%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVE 66
           ++    VLEIG G G  T  + E+  KV ++EI+E+M  
Sbjct: 68  LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYN 106

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} Length = 221

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 8/74 (10%)

Query: 34  VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDAL 89
            + I P  G + L +L        +  I+ +            ++G+   R+  +    L
Sbjct: 60  AIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL 119

Query: 90  KT----EFPQFDLV 99
                     + LV
Sbjct: 120 DVMSRLANDSYQLV 133

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 15/86 (17%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 21  SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHD 79
           + + +      D+VL++G G G   LK       + + ++I E  +     RA +     
Sbjct: 55  ACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 114

Query: 80  RLNVISKDALKTEFP---QFDLVVAN 102
           ++   ++D+         +FD++ + 
Sbjct: 115 KVFFRAQDSYGRHMDLGKEFDVISSQ 140

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} Length = 878

 Score = 40.7 bits (94), Expect = 3e-04
 Identities = 17/98 (17%), Positives = 37/98 (37%), Gaps = 13/98 (13%)

Query: 25  KSSINPDDTVLEIGPGTGNLTLKLLE-----VSKKVHAIEIDERMVEILNRRAADSGFH- 78
              +  D+ + +   G+GNL   +       + +++ A +I+   +E+L+ R        
Sbjct: 316 GRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQL 375

Query: 79  ----DRLNVISKDAL---KTEFPQFDLVVANIPYGISS 109
               +   +  +D       +F    +VV N PY    
Sbjct: 376 VSSNNAPTITGEDVCSLNPEDFANVSVVVMNPPYVSGV 413

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410

 Score = 40.1 bits (93), Expect = 3e-04
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%)

Query: 24  RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL--NRRAADSGFHDRL 81
           +   I     V+++  G G   + L+  + +   IE ++        N     +     +
Sbjct: 87  KSRFIREGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDV 145

Query: 82  NVISKDAL----KTEFPQFDLVVANIPYGISSP--LVAKLVYGTKSFRSATLLLQKEFAR 135
           N+++ D        +    D +  +      +   + A           AT LL    + 
Sbjct: 146 NILTGDFKEYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSI 205

Query: 136 RLLASPGDSEFNRLAVNVKLVADVEFV 162
               SP    ++ L  ++  V ++  V
Sbjct: 206 LAKLSPMIDLWDTLQ-SLLHVQELHVV 231

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Length = 223

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 10/76 (13%)

Query: 34  VLEIGPGTGNLTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           +LEIG   G  T+ L        +V  +E  E+  +I       +  +DR+ V +  AL 
Sbjct: 62  ILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD 121

Query: 91  T-------EFPQFDLV 99
           +       ++  FD +
Sbjct: 122 SLQQIENEKYEPFDFI 137

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Length = 229

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 34  VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
            L++G  TG   L L   L    +V   E+D +  E+       +    ++++  K AL+
Sbjct: 73  ALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALE 132

Query: 91  T--------EFPQFDLV 99
           T        E   FD+ 
Sbjct: 133 TLDELLAAGEAGTFDVA 149

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Length = 340

 Score = 39.7 bits (92), Expect = 4e-04
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
           D I +   I  D  VL++G GTG L++   +  +KKV  ++  E + + +      +   
Sbjct: 54  DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAM-DIIRLNKLE 112

Query: 79  DRLNVISKDA--LKTEFPQFDLVVANI 103
           D + +I      +     + D++++  
Sbjct: 113 DTITLIKGKIEEVHLPVEKVDVIISEW 139

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Length = 373

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLK--LLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
           ++  + ++    VL+   G+G + ++  L   S ++  IE   + +      A  +G  D
Sbjct: 210 MIELAELDGGS-VLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLD 268

Query: 80  RLNVISKDALKTEFP--QFDLVVANIPYG 106
           ++  I  DA +        D  ++N+PYG
Sbjct: 269 KIKFIQGDATQLSQYVDSVDFAISNLPYG 297

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 17/122 (13%)

Query: 30  PDDTVLEIGPGTGNLTL--KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD 87
              +V++ G G G L     LL   + V A +ID   +E   R          +N +  D
Sbjct: 51  GGRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNC------GGVNFMVAD 103

Query: 88  ALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL------QKEFARRLLASP 141
             +    ++D  + N P+G      +   +  K+F ++  +        ++F RR  ++ 
Sbjct: 104 VSEIS-GKYDTWIMNPPFGSVVKH-SDRAFIDKAFETSMWIYSIGNAKARDFLRREFSAR 161

Query: 142 GD 143
           GD
Sbjct: 162 GD 163

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 34  VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
           VLE+G  TG   L +   L    +V   +I+E   +  +    ++    ++ +    AL 
Sbjct: 64  VLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALD 123

Query: 91  T--------EFPQFDLV 99
           T           QFD +
Sbjct: 124 TLHSLLNEGGEHQFDFI 140

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Length = 317

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 28  INPDDTVLEIGPGTGNLT---LKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD 79
           ++    VLEIG GTG       +++     V ++E   ++ EI  R     G  +
Sbjct: 73  LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIEN 127

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 34  VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
            +EIG  TG   L     +    K+ A++I++   E+       +G   +++     AL 
Sbjct: 83  TMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP 142

Query: 91  T---------EFPQFDLV 99
                         +D +
Sbjct: 143 VLDEMIKDEKNHGSYDFI 160

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 38.9 bits (90), Expect = 7e-04
 Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 18/105 (17%)

Query: 15  NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--------VSKKVHAIEIDERMVE 66
           ++++   I R      +  +L IG G G + L++L         V      +E     + 
Sbjct: 37  DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 96

Query: 67  ILNRRAADSGFHDRLNVISKDALKTEFP----------QFDLVVA 101
                 A +   + +         +E+           ++D +  
Sbjct: 97  KYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHM 141

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 34  VLEIGPGTGNLTLKL---LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK 90
            +E+G  TG   L     +    K+ AI+ D    EI       +G   ++N I  DA+ 
Sbjct: 74  TIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML 133

Query: 91  T---------EFPQFDLV 99
                         +D  
Sbjct: 134 ALDNLLQGQESEGSYDFG 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	232
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	100.0
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	100.0
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	100.0
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	100.0
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	100.0
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	100.0
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	100.0
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	100.0
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	100.0
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	100.0
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	100.0
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.69
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.62
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.61
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.6
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.59
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.58
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.58
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.57
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.57
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.57
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.57
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.57
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.55
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.55
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.55
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.55
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.55
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.55
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.55
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.54
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.54
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.54
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.54
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.53
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.52
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.51
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.51
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.5
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.5
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.5
3khk_A	544	Type I restriction-modification system methylation	99.5
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.5
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.49
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	99.49
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.49
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.49
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.49
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.48
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.48
3lkd_A	542	Type I restriction-modification system methyltrans	99.48
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.48
3ufb_A	530	Type I restriction-modification system methyltran	99.48
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.48
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.48
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.47
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.47
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.47
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.47
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.47
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.46
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.46
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.45
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.45
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.45
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.45
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.45
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.45
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.45
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.45
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.45
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.44
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.44
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.44
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.43
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.43
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.43
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.43
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.43
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.42
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.42
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.42
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.42
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.42
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.42
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.42
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.42
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.41
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.41
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.41
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.41
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.41
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.4
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.4
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.4
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.4
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.4
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.4
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.4
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.4
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.39
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.39
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.39
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.39
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.39
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.39
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.39
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.38
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.38
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.38
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.38
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.38
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.38
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.38
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.38
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.38
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.38
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.37
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.37
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.37
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.37
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.37
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.37
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.37
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.37
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.37
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.37
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.36
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.36
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.36
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.36
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.36
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.36
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.35
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.35
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.35
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.35
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.35
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.35
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.35
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.35
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.35
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.34
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.34
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.34
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.34
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.34
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.34
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.33
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.33
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.33
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.33
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.32
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.32
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.32
3ocj_A	305	Putative exported protein; structural genomics, PS	99.32
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.32
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.32
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.31
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.31
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.31
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.31
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.31
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.3
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.3
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.3
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.29
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.28
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.28
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.28
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.28
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.28
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.27
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.27
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.27
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.27
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.27
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.27
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.27
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.27
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.26
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.26
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	99.26
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.26
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.26
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.26
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.26
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.25
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.25
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.24
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.24
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.24
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.24
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	99.24
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.24
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.23
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.23
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.23
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.23
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.23
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.22
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.22
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.21
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.21
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.21
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.21
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.21
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.19
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.19
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.19
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.17
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.17
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.16
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.16
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.15
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.15
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.15
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.15
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.15
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.14
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.14
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.13
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.13
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.13
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.13
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.12
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.11
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.11
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.11
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.11
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.11
2o07_A	304	Spermidine synthase; structural genomics, structur	99.11
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.1
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	99.1
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.09
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.09
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.07
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.07
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.07
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.06
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.06
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.06
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.05
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.05
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.05
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.05
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.05
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.04
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.04
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.03
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.01
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.01
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.0
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.99
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.98
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.95
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.94
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.93
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.92
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	98.91
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.87
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	98.86
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.85
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.84
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	98.84
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.81
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.78
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.77
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.77
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.75
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.75
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.74
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.69
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.66
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.65
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.64
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.6
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.56
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.52
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.48
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.45
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.42
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	98.38
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.38
2oo3_A	283	Protein involved in catabolism of external DNA; st	98.2
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	98.08
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	98.06
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.01
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.98
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.95
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.95
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.93
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.89
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	97.75
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.7
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.68
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	97.65
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	97.62
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	97.6
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.47
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	97.44
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	97.41
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	97.41
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	97.27
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.2
3me5_A	482	Cytosine-specific methyltransferase; structural ge	97.15
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	96.94
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	96.14
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	96.02
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	95.84
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	95.83
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	95.76
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	95.64
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	95.1
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	95.03
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	94.84
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	94.67
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.49
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	94.27
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	94.2
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	94.19
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	94.11
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	93.76
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	93.65
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	93.5
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	93.44
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	93.25
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	92.92
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	92.89
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	92.85
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	92.53
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	92.33
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	92.31
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	92.29
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	92.19
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	92.1
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	92.06
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	91.93
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	91.88
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	91.73
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	91.7
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.69
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	91.68
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	91.67
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	91.57
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	91.55
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	91.51
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	91.46
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	91.45
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	91.41
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	91.35
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	91.32
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	91.31
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	91.29
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	91.28
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	91.25
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.23
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	91.14
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	91.11
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	90.97
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	90.85
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	90.67
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	90.63
3cxt_A	291	Dehydrogenase with different specificities; rossma	90.61
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	90.59
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	90.46
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	90.45
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	90.37
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	90.36
4g65_A	461	TRK system potassium uptake protein TRKA; structur	90.21
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	90.18
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	90.05
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	90.03
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	89.93
3gms_A	340	Putative NADPH:quinone reductase; structural genom	89.92
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	89.84
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	89.83
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.82
3c85_A	183	Putative glutathione-regulated potassium-efflux S	89.8
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	89.7
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	89.66
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	89.66
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	89.6
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	89.53
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	89.47
3imf_A	257	Short chain dehydrogenase; structural genomics, in	89.46
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	89.45
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	89.41
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	89.4
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	89.39
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	89.34
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	89.24
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	89.1
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	89.1
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	89.1
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	89.05
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	89.04
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	88.94
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	88.91
1xq1_A	266	Putative tropinone reducatse; structural genomics,	88.9
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	88.82
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	88.79
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	88.75
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	88.71
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	88.69
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	88.69
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	88.6
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	88.49
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	88.32
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	88.31
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	88.25
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	87.93
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	87.89
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	87.69
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	87.64
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	87.59
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	87.46
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	87.38
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	87.35
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	87.31
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	86.92
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	86.8
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.61
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	86.61
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	86.61
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	86.6
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	86.51
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	86.33
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	86.27
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	86.24
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	86.21
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	85.92
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	85.75
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	85.71
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	85.67
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	85.67
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	85.66
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	85.63
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	85.62
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	85.56
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	85.47
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	85.42
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	85.37
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	85.3
4eye_A	342	Probable oxidoreductase; structural genomics, niai	85.23
2zig_A	297	TTHA0409, putative modification methylase; methylt	85.23
1xkq_A	280	Short-chain reductase family member (5D234); parra	84.79
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	84.75
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	84.7
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	84.7
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	84.69
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	84.68
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	84.67
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	84.52
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	84.49
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	84.45
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	84.32
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	84.16
3rih_A	293	Short chain dehydrogenase or reductase; structural	84.07
4g65_A	461	TRK system potassium uptake protein TRKA; structur	84.05
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	83.97
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	83.95
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	83.87
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	83.8
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	83.65
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	83.47
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	83.44
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	83.44
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	83.39
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	83.38
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	83.28
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	83.19
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	83.13
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	83.13
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	83.11
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	83.1
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	83.08
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	82.86
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	82.54
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	82.53
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	82.5
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	82.49
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	82.41
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	82.4
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	82.29
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	82.29
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	82.27
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	82.18
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	82.12
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.11
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	82.09
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	82.08
1xhl_A	297	Short-chain dehydrogenase/reductase family member	82.02
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	81.77
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	81.72
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	81.37
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	81.36

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=100.00  E-value=1.9e-50  Score=325.16  Aligned_cols=213  Identities=33%  Similarity=0.569  Sum_probs=191.2

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|+.+++.|++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++...   +++
T Consensus         1 ~~~~k~~GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~---~~v   77 (255)
T 3tqs_A            1 MPMRKRFGQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQ---KNI   77 (255)
T ss_dssp             --------CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTC---TTE
T ss_pred             CCCCCcCCcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhC---CCc
Confidence            57899999999999999999999999999999999999999999999998899999999999999999998652   589


Q ss_pred             EEEEcCCCCCCCC------CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeee
Q 047897           82 NVISKDALKTEFP------QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKL  155 (232)
Q Consensus        82 ~~~~~D~~~~~~~------~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~  155 (232)
                      +++++|+++++++      ++| |++|+||+++++++.+++.....+..+++|+|+|+|+|+++.||++.|+.+|+.+|+
T Consensus        78 ~~i~~D~~~~~~~~~~~~~~~~-vv~NlPY~is~~il~~ll~~~~~~~~~~lm~QkEva~Rl~a~pg~k~yg~lsv~~q~  156 (255)
T 3tqs_A           78 TIYQNDALQFDFSSVKTDKPLR-VVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQKEVVRRITAEVGSHDYGRLSVMAQY  156 (255)
T ss_dssp             EEEESCTTTCCGGGSCCSSCEE-EEEECCHHHHHHHHHHHHHTGGGEEEEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHH
T ss_pred             EEEEcchHhCCHHHhccCCCeE-EEecCCcccCHHHHHHHHhCCCChheEEEEEeHHHHHHhhCCCCCCccchhhheeee
Confidence            9999999998763      356 999999999999999999987788899999999999999999999999999999999


Q ss_pred             eeeeEEEEEecCCCcccCCCccEEEEEEEeC-CCCC-CCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          156 VADVEFVMDVSKRDFLPCPKVDSSVVIIRPK-AEIP-DVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       156 ~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~-~~~~-~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      +++++.++++|++.|.|+|+|+|+|+++.++ +..+ ..+.+.|..+++.+|.+|||+|+|+|+.
T Consensus       157 ~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~~~L~~  221 (255)
T 3tqs_A          157 FCDNTYLFTVSPQAFTPPPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGNALKK  221 (255)
T ss_dssp             HEEEEEEEEECGGGEESCCSSCEEEEEEEECCSCSSCCSCHHHHHHHHHHHHHSTTSCHHHHTTT
T ss_pred             eEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCCccccHHHHHHHHHHHHHccChHHHHHHhh
Confidence            9999999999999999999999999999998 4432 5678899999999999999999999875

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=100.00  E-value=7.3e-50  Score=323.85  Aligned_cols=218  Identities=34%  Similarity=0.472  Sum_probs=201.0

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|+.+++.|++.+++.++ +|||||||+|.+|..+++.+.+|+|+|+|+++++.+++++..    +++
T Consensus        19 ~~~~k~~GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~----~~v   93 (271)
T 3fut_A           19 LFADKRFGQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSG----LPV   93 (271)
T ss_dssp             CCCSTTSSCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTT----SSE
T ss_pred             CCccccCCccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCC----CCE
Confidence            578999999999999999999999999989 999999999999999999889999999999999999999863    579


Q ss_pred             EEEEcCCCCCCCC---CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeee
Q 047897           82 NVISKDALKTEFP---QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVAD  158 (232)
Q Consensus        82 ~~~~~D~~~~~~~---~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~  158 (232)
                      +++++|+++++++   .+|.|++|+||+++++++.+++.. ..+..+++|+|+|+|+|+++.||++.|+.+++.+|++++
T Consensus        94 ~vi~~D~l~~~~~~~~~~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~QkEva~Rl~A~pg~k~yg~lSv~~q~~~~  172 (271)
T 3fut_A           94 RLVFQDALLYPWEEVPQGSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQKEVAERMTARPKTPAYGVLTLRVAHHAV  172 (271)
T ss_dssp             EEEESCGGGSCGGGSCTTEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEEHHHHHHHTCCTTSTTCSHHHHHHHHHEE
T ss_pred             EEEECChhhCChhhccCccEEEecCcccccHHHHHHHhcC-CCCCEEEEEeeeeeeeecccCCCCCcccHHHHHHHHHee
Confidence            9999999998765   689999999999999999999987 778899999999999999999999999999999999999


Q ss_pred             eEEEEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC----hHHHHHHHHh
Q 047897          159 VEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ----KKKVIELLRL  228 (232)
Q Consensus       159 ~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~----~~~~~~~~~~  228 (232)
                      ++.++++|++.|.|+|+|+|+|+++.+++...   .+.|..+++.+|.+|||+|+|+|+.    .+.+.+.|..
T Consensus       173 ~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~---~~~~~~~v~~~F~~rrKtL~n~L~~~~~~~~~~~~~l~~  243 (271)
T 3fut_A          173 AERLFDLPPGAFFPPPKVWSSLVRLTPTGALD---DPGLFRLVEAAFGKRRKTLLNALAAAGYPKARVEEALRA  243 (271)
T ss_dssp             EEEEEEECGGGEESCCSSCEEEEEEEECSCCC---CHHHHHHHHHHTSSTTSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred             EEEEEEEChHHeECCCCCcEEEEEEEECCCCc---HHHHHHHHHHHHhcCCcHHHHHHHhhcCCHHHHHHHHHH
Confidence            99999999999999999999999999987543   4789999999999999999998863    4556666654

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=100.00  E-value=1e-48  Score=318.75  Aligned_cols=212  Identities=32%  Similarity=0.493  Sum_probs=192.9

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCe----EEEEEcCHHHHHHHHHHHhhcCC
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK----VHAIEIDERMVEILNRRAADSGF   77 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~----v~~vD~~~~~~~~a~~~~~~~~~   77 (232)
                      ++++|++||||++|+.+++.|++.+++.++++|||||||+|.+|..+++.+.+    |+|+|+|+++++.++++.     
T Consensus        14 ~~~~k~~GQ~fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~-----   88 (279)
T 3uzu_A           14 HFARKRFGQNFLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF-----   88 (279)
T ss_dssp             ----CCCSCCEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH-----
T ss_pred             CCccccCCccccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc-----
Confidence            46789999999999999999999999999999999999999999999996666    999999999999999994     


Q ss_pred             CccEEEEEcCCCCCCCCC--------cceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccch
Q 047897           78 HDRLNVISKDALKTEFPQ--------FDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRL  149 (232)
Q Consensus        78 ~~~~~~~~~D~~~~~~~~--------~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~  149 (232)
                      .++++++++|+++++++.        .+.|++|+||+++++++.+++.....+..+++|+|+|+|+|+++.||++.|+.+
T Consensus        89 ~~~v~~i~~D~~~~~~~~~~~~~~~~~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~QkEva~Rl~A~pg~k~yg~l  168 (279)
T 3uzu_A           89 GELLELHAGDALTFDFGSIARPGDEPSLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQNEVVERMVAEPGTKAFSRL  168 (279)
T ss_dssp             GGGEEEEESCGGGCCGGGGSCSSSSCCEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEEHHHHHHHTCCTTSTTCCHH
T ss_pred             CCCcEEEECChhcCChhHhcccccCCceEEEEccCccccHHHHHHHHhccCCccEEEEEeeHHHHHHHhCCCCCCcccHH
Confidence            168999999999987653        236999999999999999999988888999999999999999999999999999


Q ss_pred             hheeeeeeeeEEEEEecCCCcccCCCccEEEEEEEeCCCC--CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          150 AVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      ++.+|++++++.++++|++.|.|+|+|+|+|+++.|++..  ...+.+.|..+++.+|.+|||+|+|+|+.
T Consensus       169 Sv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n~L~~  239 (279)
T 3uzu_A          169 SVMLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRNTLGG  239 (279)
T ss_dssp             HHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCGGGSCSSCHHHHHHHHHHHGGGTTSBHHHHTGG
T ss_pred             HHHHhhheEEEEEEEEChHHccCCCCCeEEEEEEEecCCCCCCcccHHHHHHHHHHHHhccChHHHHHHHh
Confidence            9999999999999999999999999999999999998753  35678899999999999999999998863

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=100.00  E-value=4.6e-47  Score=310.71  Aligned_cols=212  Identities=37%  Similarity=0.541  Sum_probs=188.6

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|+.+++.|++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...   +++
T Consensus        22 ~~~~k~~GQnfL~d~~i~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~---~~v   98 (295)
T 3gru_A           22 FKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELY---NNI   98 (295)
T ss_dssp             --------CCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHC---SSE
T ss_pred             CCCccccCccccCCHHHHHHHHHhcCCCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccC---CCe
Confidence            57899999999999999999999999999999999999999999999998899999999999999999998732   579


Q ss_pred             EEEEcCCCCCCCC--CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeee
Q 047897           82 NVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADV  159 (232)
Q Consensus        82 ~~~~~D~~~~~~~--~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~  159 (232)
                      +++++|+++.+++  .||.|++|+||+++++++.+++..  .+..+.+++|+|++.|+++.||++.|+.+++.++++++.
T Consensus        99 ~vi~gD~l~~~~~~~~fD~Iv~NlPy~is~pil~~lL~~--~~~~~~lm~Q~eva~Rl~a~pg~k~yg~Lsv~~q~~~~~  176 (295)
T 3gru_A           99 EIIWGDALKVDLNKLDFNKVVANLPYQISSPITFKLIKR--GFDLAVLMYQYEFAKRMVAAAGTKDYGRLSVAVQSRADV  176 (295)
T ss_dssp             EEEESCTTTSCGGGSCCSEEEEECCGGGHHHHHHHHHHH--CCSEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHTTEEE
T ss_pred             EEEECchhhCCcccCCccEEEEeCcccccHHHHHHHHhc--ccceEEEeeecccccEEEecCCCcchhHHHHHHHhhccE
Confidence            9999999998765  599999999999999999999974  467789999999999999999999999999999999999


Q ss_pred             EEEEEecCCCcccCCCccEEEEEEEeCCCC-CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          160 EFVMDVSKRDFLPCPKVDSSVVIIRPKAEI-PDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       160 ~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      +.+++++++.|.|+|+|+|+++.+.+++.. ...+.+.|..+++.+|.+|||+|+|+|+.
T Consensus       177 ~~~~~v~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n~L~~  236 (295)
T 3gru_A          177 EIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKALID  236 (295)
T ss_dssp             EEEEEECGGGEESCCSSCEEEEEEEECHHHHCCSCHHHHHHHHHHHHTTTTSBHHHHHHH
T ss_pred             EEEEEECcccCCCcCCCeEEEEEEEcCCCCCCcccHHHHHHHHHHHHccCchHHHHHHhh
Confidence            999999999999999999999999998422 23467889999999999999999999863

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=100.00  E-value=1.2e-45  Score=296.70  Aligned_cols=209  Identities=36%  Similarity=0.540  Sum_probs=187.9

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDR   80 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~   80 (232)
                      ++++|++||||++|+.+++.|++.+++.++++|||||||+|.+|..+++. ..+|+|+|+|+.+++.++++ .    ..+
T Consensus         3 ~~~~k~~GQnfl~d~~i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~-~----~~~   77 (249)
T 3ftd_A            3 VRLKKSFGQHLLVSEGVLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI-G----DER   77 (249)
T ss_dssp             -----CCCSSCEECHHHHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS-C----CTT
T ss_pred             CCCCCcccccccCCHHHHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc-c----CCC
Confidence            47899999999999999999999999989999999999999999999997 48999999999999999887 2    157


Q ss_pred             EEEEEcCCCCCCCCC---cceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeee
Q 047897           81 LNVISKDALKTEFPQ---FDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVA  157 (232)
Q Consensus        81 ~~~~~~D~~~~~~~~---~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~  157 (232)
                      ++++++|+++++++.   ...|++|+||+++++++.+++.....+..+++|+|+|+++|+++   ++.|+.+++.++.++
T Consensus        78 v~~i~~D~~~~~~~~~~~~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~Qkeva~Rl~a---~k~yg~lsv~~q~~~  154 (249)
T 3ftd_A           78 LEVINEDASKFPFCSLGKELKVVGNLPYNVASLIIENTVYNKDCVPLAVFMVQKEVAEKLQG---KKDTGWLSVFVRTFY  154 (249)
T ss_dssp             EEEECSCTTTCCGGGSCSSEEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEEEHHHHHHHHT---SSCCCHHHHHHHHHE
T ss_pred             eEEEEcchhhCChhHccCCcEEEEECchhccHHHHHHHHhcCCCCceEEEEEeHHHHHHhhc---cccccHHHHHHHhHE
Confidence            999999999987653   34899999999999999999998878899999999999999988   899999999999999


Q ss_pred             eeEEEEEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          158 DVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       158 ~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      +++.++++|++.|.|+|+|+|+++.+.+++.......+.|..+++.+|.+|||+|+|+|+.
T Consensus       155 ~~~~~~~v~~~~F~P~PkV~savv~l~~~~~~~~~~~~~~~~~v~~~F~~rrk~l~~~l~~  215 (249)
T 3ftd_A          155 DVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVKDLKNYKKFLTKIFQNRRKVLRKKIPE  215 (249)
T ss_dssp             EEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCCCHHHHHHHHHHHHSSTTSCGGGTSCH
T ss_pred             EEEEEEEEChHHccCCCCCeEEEEEEEECCCCCcchHHHHHHHHHHHHhCcChhHHHHHHH
Confidence            9999999999999999999999999999876543347889999999999999999999864

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=100.00  E-value=4.9e-45  Score=293.30  Aligned_cols=204  Identities=31%  Similarity=0.471  Sum_probs=186.5

Q ss_pred             ccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCe--EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK--VHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        10 q~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      |||++|+.+++.|++.+++.++++|||||||+|.+|. +.. +.+  |+|+|+|+.+++.+++++...   ++++++++|
T Consensus         1 QnfL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D   75 (252)
T 1qyr_A            1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQD   75 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSC
T ss_pred             CCCcCCHHHHHHHHHhcCCCCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECc
Confidence            8999999999999999999899999999999999999 654 567  999999999999999987543   589999999


Q ss_pred             CCCCCCC-------CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeE
Q 047897           88 ALKTEFP-------QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVE  160 (232)
Q Consensus        88 ~~~~~~~-------~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~  160 (232)
                      +++++++       ..|.|++|+||+++++++.+++.....+..+++|+|+|+++|++++||++.|+.+++.++++++++
T Consensus        76 ~~~~~~~~~~~~~~~~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~QkEva~Rl~a~pG~k~yg~lsv~~q~~~~~~  155 (252)
T 1qyr_A           76 AMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVI  155 (252)
T ss_dssp             GGGCCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEEEE
T ss_pred             hhhCCHHHhhcccCCceEEEECCCCCccHHHHHHHHhcCCCcceEEEEEeHHHHHHhcCCCCCccccHHHHHHHHHheEE
Confidence            9998754       236899999999999999999988777889999999999999999999999999999999999999


Q ss_pred             EEEEecCCCcccCCCccEEEEEEEeCCCC-CC-CCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          161 FVMDVSKRDFLPCPKVDSSVVIIRPKAEI-PD-VNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       161 ~~~~~~~~~f~P~p~v~s~~~~~~~~~~~-~~-~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      .++.+|++.|.|+|+|+|+++.+.+++.. .. .+.+.|..+++.+|++|||+|+|+|+.
T Consensus       156 ~~~~v~~~~F~P~PkV~Savv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n~l~~  215 (252)
T 1qyr_A          156 PVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGN  215 (252)
T ss_dssp             EEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTT
T ss_pred             EEEEEChHHccCCCCceEEEEEEEEcCcCCCCccCHHHHHHHHHHHHHhCCcHHHHHHhh
Confidence            99999999999999999999999998753 22 577889999999999999999999975

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=100.00  E-value=3.4e-43  Score=288.11  Aligned_cols=215  Identities=49%  Similarity=0.791  Sum_probs=196.6

Q ss_pred             ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNV   83 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~   83 (232)
                      .+|++||||++|+.+++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+..+++++
T Consensus         2 ~~k~~gq~fl~d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~   81 (285)
T 1zq9_A            2 SNTGIGQHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQV   81 (285)
T ss_dssp             ------CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEE
T ss_pred             CCCCCCcCccCCHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEE
Confidence            47899999999999999999999998999999999999999999999888999999999999999999876665468999


Q ss_pred             EEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEEE
Q 047897           84 ISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVM  163 (232)
Q Consensus        84 ~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~~  163 (232)
                      +++|+++.+.+.||.|++|+||+++++++.+++.+......+.+++|+|+++|++.+||+..|+.+++..+++++++.++
T Consensus        82 ~~~D~~~~~~~~fD~vv~nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y~~lsv~~~~~~~~~~~~  161 (285)
T 1zq9_A           82 LVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLM  161 (285)
T ss_dssp             EESCTTTSCCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCSHHHHHHHHHEEEEEEE
T ss_pred             EEcceecccchhhcEEEEecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCcccchhhhhhhhhhheeeeE
Confidence            99999998888999999999999999999999998888899999999999999999999999999999999999999999


Q ss_pred             EecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          164 DVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       164 ~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      .++++.|.|+|+|+|+++.+.++......+.+.|..+++.+|.+|||+|+|+|+.
T Consensus       162 ~v~~~~F~P~p~v~savv~~~~~~~~~~~~~~~~~~~~~~~F~~rrK~l~~~l~~  216 (285)
T 1zq9_A          162 KVGKNNFRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKS  216 (285)
T ss_dssp             EECGGGEESCCSSCEEEEEEEECSSCCSCCHHHHHHHHHHHHTTTTSBHHHHTTS
T ss_pred             EEChhhCCCCCCCcEEEEEEEECCCCCCCCHHHHHHHHHHHHhcchhHHHHHhch
Confidence            9999999999999999999999876555677889999999999999999999975

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=100.00  E-value=7.9e-42  Score=281.71  Aligned_cols=216  Identities=48%  Similarity=0.747  Sum_probs=190.6

Q ss_pred             cccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEE
Q 047897            3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLN   82 (232)
Q Consensus         3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~   82 (232)
                      +++|.+||||++++.+++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...+. ++++
T Consensus        15 ~~~k~~Gq~fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~   93 (299)
T 2h1r_A           15 ENLYFQGQHLLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGY-NNLE   93 (299)
T ss_dssp             --------CEECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTC-CCEE
T ss_pred             cchhccccceecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceE
Confidence            468999999999999999999999988999999999999999999999888999999999999999999977666 5899


Q ss_pred             EEEcCCCCCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEE
Q 047897           83 VISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFV  162 (232)
Q Consensus        83 ~~~~D~~~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~  162 (232)
                      ++++|+++.+.++||+|++|+||++.++++.+++.+......+.+++|+|.+.|++++||+..|+.+++.++.+++++.+
T Consensus        94 ~~~~D~~~~~~~~~D~Vv~n~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G~~~y~~ls~~~~~~~~~~~~  173 (299)
T 2h1r_A           94 VYEGDAIKTVFPKFDVCTANIPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVGDSNYSRLTINVKLFCKVTKV  173 (299)
T ss_dssp             C----CCSSCCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTTSTTCCHHHHHHHHHEEEEEE
T ss_pred             EEECchhhCCcccCCEEEEcCCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCCCcchhHHHHHHHHhhceEEE
Confidence            99999999988899999999999999999999998888888899999999999999999999999999999999999999


Q ss_pred             EEecCCCcccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCCh
Q 047897          163 MDVSKRDFLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQK  219 (232)
Q Consensus       163 ~~~~~~~f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~~  219 (232)
                      ..++++.|.|+|+|+|+++.+.++......+.+.|..+++.+|.+|||+|+|.|+..
T Consensus       174 ~~v~~~~F~p~p~V~s~vv~~~~~~~~~~~~~~~~~~~v~~~F~~rrKtl~~~l~~~  230 (299)
T 2h1r_A          174 CNVNRSSFNPPPKVDSVIVKLIPKESSFLTNFDEWDNLLRICFSRKRKTLHAIFKRN  230 (299)
T ss_dssp             EEECGGGEESCCSSCEEEEEEEECGGGGGSCHHHHHHHHHHHHTTTTSBHHHHHTSH
T ss_pred             EEECchhcCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHhhcchHHHHHhhhh
Confidence            999999999999999999999987654346788899999999999999999999753

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=100.00  E-value=2.2e-42  Score=288.19  Aligned_cols=210  Identities=20%  Similarity=0.249  Sum_probs=187.0

Q ss_pred             cccCCCcccccCCHHHHHHHHHhcCCCC------CCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh
Q 047897            3 FFHKSKGQHILTNQRVLDSIVRKSSINP------DDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus         3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~------~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      +++|++|||||+|++++++|++.+++.+      ++.|||||+|.|.+|..|++.  +.+|+++|+|+.+++.+++.+ .
T Consensus        25 ~~kk~lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~  103 (353)
T 1i4w_A           25 KLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E  103 (353)
T ss_dssp             SSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T
T ss_pred             CCCCCCCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c
Confidence            5789999999999999999999998764      589999999999999999984  679999999999999999887 2


Q ss_pred             cCCCccEEEEEcCCCCCC-C----CC-------------c---ceeecccCcccchHHHHHHhcCC--------CCccce
Q 047897           75 SGFHDRLNVISKDALKTE-F----PQ-------------F---DLVVANIPYGISSPLVAKLVYGT--------KSFRSA  125 (232)
Q Consensus        75 ~~~~~~~~~~~~D~~~~~-~----~~-------------~---D~Vi~n~p~~~~~~~l~~~~~~~--------~~~~~~  125 (232)
                        . ++++++++|+++++ +    ..             +   -.|++|+||+++++++.+++...        .....+
T Consensus       104 --~-~~l~ii~~D~l~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~vvaNLPYnIstpil~~ll~~~~~~~~l~~~~~~~m  180 (353)
T 1i4w_A          104 --G-SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKM  180 (353)
T ss_dssp             --T-SSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEEE
T ss_pred             --C-CCEEEEECCccchhhHHHhhcccccccccccccccCCCceEEEEECCCchHHHHHHHHHHhccccccccccCcceE
Confidence              1 68999999998764 1    11             0   17999999999999999988632        245688


Q ss_pred             EehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEEEEec---CCCcccCC----------Cc--------cEEEEEEE
Q 047897          126 TLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVS---KRDFLPCP----------KV--------DSSVVIIR  184 (232)
Q Consensus       126 ~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~f~P~p----------~v--------~s~~~~~~  184 (232)
                      ++|+|+|+|+|++++||++.|+++++.+|++++++.++.++   ++.|.|+|          +|        +|+|+++.
T Consensus       181 ~lmvQkEvA~Rl~A~PGsk~yg~LSV~~q~~~~v~~l~~v~~~~~~~F~P~P~~k~~p~~~PkV~~~~~~~~dSaVV~l~  260 (353)
T 1i4w_A          181 LLWMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMD  260 (353)
T ss_dssp             EEEEEHHHHHHHHCCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEEEE
T ss_pred             EEEeEHHHHHHhcCCCCCccccHHHHHHHHHcceEEEEecCCccCCCccCCCcccccccccCcccccCCCCCceEEEEEE
Confidence            99999999999999999999999999999999999999999   99999998          88        99999999


Q ss_pred             eCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          185 PKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      |++.  ..+.+.|..+++.+|.+|||+|+|+|+.
T Consensus       261 p~~~--~~~~~~~~~vvr~~F~qRRKtL~n~L~~  292 (353)
T 1i4w_A          261 PIDF--DFDVDNWDYVTRHLMILKRTPLNTVMDS  292 (353)
T ss_dssp             ECCC--CSCHHHHHHHHHHHHTTTTSCTTTGGGG
T ss_pred             ECCC--cccHHHHHHHHHHHHhhchHHHHHHHHh
Confidence            9876  4677889999999999999999999974

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=100.00  E-value=4.2e-39  Score=258.27  Aligned_cols=206  Identities=28%  Similarity=0.448  Sum_probs=176.5

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++|+.+++.+++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...   +++
T Consensus         2 ~~~~k~~gQ~fl~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---~~v   78 (244)
T 1qam_A            2 NEKNIKHSQNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNF   78 (244)
T ss_dssp             --------CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSE
T ss_pred             CCCCccCCccccCCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccC---CCe
Confidence            57899999999999999999999999888999999999999999999998899999999999999999998642   579


Q ss_pred             EEEEcCCCCCCCCC--cceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeee
Q 047897           82 NVISKDALKTEFPQ--FDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADV  159 (232)
Q Consensus        82 ~~~~~D~~~~~~~~--~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~  159 (232)
                      +++++|+++++.+.  ...|++|+||+++++++.+++.+ .....+.+++|+|.+.|++++||     .+++..+.+++.
T Consensus        79 ~~~~~D~~~~~~~~~~~~~vv~nlPy~~~~~~l~~~l~~-~~~~~~~lm~q~e~a~rll~~~G-----~l~v~~~~~~~~  152 (244)
T 1qam_A           79 QVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFD-SIADEIYLIVEYGFAKRLLNTKR-----SLALFLMAEVDI  152 (244)
T ss_dssp             EEECCCGGGCCCCSSCCCEEEEECCGGGHHHHHHHHHHS-CCCSEEEEEEEHHHHHHHTCTTS-----HHHHHHTTTEEE
T ss_pred             EEEEChHHhCCcccCCCeEEEEeCCcccCHHHHHHHHhc-CCCCeEEEEEEHHHHHHHhcCCc-----chhHHhhhhEeE
Confidence            99999999987652  23699999999999999998876 45667888999999999998875     588889999999


Q ss_pred             EEEEEecCCCcccCCCccEEEEEEEeCCCCC-CCCHHHHHHHHHHhhcCCCchHHhhc
Q 047897          160 EFVMDVSKRDFLPCPKVDSSVVIIRPKAEIP-DVNLDEWRAFTRTCFSKKNKTLGATF  216 (232)
Q Consensus       160 ~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~rrk~l~~~~  216 (232)
                      +.+..++++.|.|+|+|+|+++.+.++.... ..+.+.|..+++.+|++|||+|.|.+
T Consensus       153 ~~~~~v~~~~F~P~p~v~s~vv~~~~~~~~~~~~~~~~~~~~v~~~F~~rrk~l~~~~  210 (244)
T 1qam_A          153 SILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKN  210 (244)
T ss_dssp             EEEEEECGGGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGTCCHH
T ss_pred             EEEEEEChhhccCCCCceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhccccccchH
Confidence            9999999999999999999999999865432 24567899999999999999999875

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=100.00  E-value=2e-35  Score=237.10  Aligned_cols=205  Identities=25%  Similarity=0.443  Sum_probs=177.4

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      ++++|++||||++++.+++.+++.+++.++++|||||||+|.++..+++.+.+|+|+|+|+.+++.++++...   .+++
T Consensus         1 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~---~~~v   77 (245)
T 1yub_A            1 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKL---NTRV   77 (245)
T ss_dssp             CCCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTT---CSEE
T ss_pred             CCCCcccCCCCCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhcc---CCce
Confidence            4789999999999999999999999988899999999999999999999889999999999999999888752   2589


Q ss_pred             EEEEcCCCCCCCC---CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeee
Q 047897           82 NVISKDALKTEFP---QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVAD  158 (232)
Q Consensus        82 ~~~~~D~~~~~~~---~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~  158 (232)
                      +++++|+.+.+.+   +| .|++|+||+++++++.+++.+ .......+|+|.+.+.|+++++|.     +++..+.+++
T Consensus        78 ~~~~~D~~~~~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~-~~~~~~~lm~q~e~a~rll~~~G~-----l~v~~~~~~~  150 (245)
T 1yub_A           78 TLIHQDILQFQFPNKQRY-KIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTLDIHRT-----LGLLLHTQVS  150 (245)
T ss_dssp             EECCSCCTTTTCCCSSEE-EEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHHCGGGS-----HHHHTTTTBC
T ss_pred             EEEECChhhcCcccCCCc-EEEEeCCccccHHHHHHHHhC-CCCCeEEEEeeHHHHHHHhCCCCc-----hhhhheehee
Confidence            9999999998753   57 899999999999998888765 345667889999999999988753     7777778888


Q ss_pred             eEEEEEecCCCcccCCCccEEEEEEEeCCCCCC-CCHHHHHHHHHHhhcCCCchHHhhc
Q 047897          159 VEFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPD-VNLDEWRAFTRTCFSKKNKTLGATF  216 (232)
Q Consensus       159 ~~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~rrk~l~~~~  216 (232)
                      .+.+..+++..|.|.|+|+++++++.+++.... .+...|...++.+|.+|||++.|.+
T Consensus       151 ~~~~~~v~~~~f~P~p~v~s~~v~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~  209 (245)
T 1yub_A          151 IQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKN  209 (245)
T ss_dssp             CCEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSS
T ss_pred             EEEEEEECchhccCCCCceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhcchhhhchH
Confidence            888999999999999999999999987443222 2345699999999999999999875

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.69  E-value=2.1e-16  Score=122.79  Aligned_cols=104  Identities=21%  Similarity=0.263  Sum_probs=89.2

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGF   77 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~   77 (232)
                      .+.++.+|| |.+++.+.+.++..+.   ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...++
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~   97 (207)
T 1wy7_A           19 KNPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG   97 (207)
T ss_dssp             SSCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT
T ss_pred             CCcccceee-ecCchHHHHHHHHHHHHcCCCCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            356778888 8888999888876553   4578899999999999999999864 5799999999999999999988775


Q ss_pred             CccEEEEEcCCCCCCCCCcceeecccCcccch
Q 047897           78 HDRLNVISKDALKTEFPQFDLVVANIPYGISS  109 (232)
Q Consensus        78 ~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~  109 (232)
                        +++++++|+.+++ .+||+|++|+||+...
T Consensus        98 --~~~~~~~d~~~~~-~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           98 --KFKVFIGDVSEFN-SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             --SEEEEESCGGGCC-CCCSEEEECCCCSSSS
T ss_pred             --CEEEEECchHHcC-CCCCEEEEcCCCcccc
Confidence              6999999999975 4899999999998763

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.62  E-value=1.8e-15  Score=115.87  Aligned_cols=95  Identities=25%  Similarity=0.355  Sum_probs=78.9

Q ss_pred             CCHHHHHHHHHhcCC---CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           14 TNQRVLDSIVRKSSI---NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~---~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +...+.+.+++.+..   .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++...++ ++++++++|+.
T Consensus        25 ~~~~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~  103 (189)
T 3p9n_A           25 TTDRVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVA  103 (189)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHH
T ss_pred             CcHHHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHH
Confidence            446677777666532   478899999999999999887754 5899999999999999999998887 68999999998


Q ss_pred             CCC----CCCcceeecccCcccch
Q 047897           90 KTE----FPQFDLVVANIPYGISS  109 (232)
Q Consensus        90 ~~~----~~~~D~Vi~n~p~~~~~  109 (232)
                      +..    .++||+|++|+||+...
T Consensus       104 ~~~~~~~~~~fD~i~~~~p~~~~~  127 (189)
T 3p9n_A          104 AVVAAGTTSPVDLVLADPPYNVDS  127 (189)
T ss_dssp             HHHHHCCSSCCSEEEECCCTTSCH
T ss_pred             HHHhhccCCCccEEEECCCCCcch
Confidence            753    35899999999998753

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.61  E-value=7.5e-15  Score=126.95  Aligned_cols=103  Identities=22%  Similarity=0.366  Sum_probs=88.8

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---------------CCeEEEEEcCHHHHHHHH
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---------------SKKVHAIEIDERMVEILN   69 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---------------~~~v~~vD~~~~~~~~a~   69 (232)
                      ++..|| |++++.+++.|++.+.+.++.+|||+|||+|.++..+++.               ..+++|+|+++.+++.|+
T Consensus       147 ~~~~G~-fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~  225 (445)
T 2okc_A          147 KSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS  225 (445)
T ss_dssp             TTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             cccCCc-ccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHH
Confidence            456787 5688999999999998888899999999999999888762               368999999999999999


Q ss_pred             HHHhhcCCCc-cEEEEEcCCCCCCCC-CcceeecccCcccc
Q 047897           70 RRAADSGFHD-RLNVISKDALKTEFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        70 ~~~~~~~~~~-~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~  108 (232)
                      .++..+|... +..++++|++..+.. .||+|++|+||+..
T Consensus       226 ~nl~l~g~~~~~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          226 MNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTR  266 (445)
T ss_dssp             HHHHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCC
T ss_pred             HHHHHhCCCcCCCCEeeCCCCCCcccCCcCEEEECCCCCCc
Confidence            9998887632 688999999987654 89999999999864

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.60  E-value=3.7e-15  Score=126.10  Aligned_cols=94  Identities=19%  Similarity=0.316  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC--eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .++.+.+.++..+ +.++.+|||+|||+|.++..++..+.  +|+|+|+|+.+++.|++++...|+.++++++++|+.++
T Consensus       202 l~~~la~~l~~~~-~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~  280 (373)
T 3tm4_A          202 LKASIANAMIELA-ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQL  280 (373)
T ss_dssp             CCHHHHHHHHHHH-TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGG
T ss_pred             ccHHHHHHHHHhh-cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhC
Confidence            3688999999888 88899999999999999999999665  99999999999999999999998867899999999998


Q ss_pred             CC--CCcceeecccCcccc
Q 047897           92 EF--PQFDLVVANIPYGIS  108 (232)
Q Consensus        92 ~~--~~~D~Vi~n~p~~~~  108 (232)
                      +.  .+||+|++|+||+..
T Consensus       281 ~~~~~~fD~Ii~npPyg~r  299 (373)
T 3tm4_A          281 SQYVDSVDFAISNLPYGLK  299 (373)
T ss_dssp             GGTCSCEEEEEEECCCC--
T ss_pred             CcccCCcCEEEECCCCCcc
Confidence            75  379999999999754

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.59  E-value=9.2e-15  Score=117.77  Aligned_cols=77  Identities=23%  Similarity=0.298  Sum_probs=69.8

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeeccc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANI  103 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~  103 (232)
                      ++++.+|||+|||+|.++..+++    .+.+|+|+|+|+.|++.|++++...+...+++++++|+.+++.+++|+|+++.
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            56889999999999999999987    35699999999999999999999887767899999999999999999999875


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      .
T Consensus       148 ~  148 (261)
T 4gek_A          148 T  148 (261)
T ss_dssp             C
T ss_pred             e
Confidence            4

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.58  E-value=4.7e-14  Score=107.66  Aligned_cols=92  Identities=16%  Similarity=0.362  Sum_probs=81.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCCCCCC-C
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDALKTEF-P   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~~~~~-~   94 (232)
                      ...+.+++.+...++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++...+... +++++.+|+.+... .
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~  118 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccC
Confidence            688889999988889999999999999999999888899999999999999999998877642 49999999987543 3


Q ss_pred             CcceeecccCcccc
Q 047897           95 QFDLVVANIPYGIS  108 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~  108 (232)
                      +||+|++|+||+..
T Consensus       119 ~~D~v~~~~~~~~~  132 (194)
T 1dus_A          119 KYNKIITNPPIRAG  132 (194)
T ss_dssp             CEEEEEECCCSTTC
T ss_pred             CceEEEECCCcccc
Confidence            79999999998864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.58  E-value=1.7e-14  Score=113.71  Aligned_cols=96  Identities=23%  Similarity=0.294  Sum_probs=75.9

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCC-ccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPG-TGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G-~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      +.++...+.++-...+.++.+|||+||| +|.++..+++. +.+|+|+|+|+.+++.|++++...+.  +++++++|+..
T Consensus        38 ~~p~~~~~~l~~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~  115 (230)
T 3evz_A           38 LVTTPISRYIFLKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGI  115 (230)
T ss_dssp             CCCCHHHHHHHHHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCS
T ss_pred             EeCCCchhhhHhHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchh
Confidence            3344455666344445788999999999 99999999986 89999999999999999999998876  69999999643


Q ss_pred             ---CCCCCcceeecccCcccchH
Q 047897           91 ---TEFPQFDLVVANIPYGISSP  110 (232)
Q Consensus        91 ---~~~~~~D~Vi~n~p~~~~~~  110 (232)
                         ++.++||+|++|+||.....
T Consensus       116 ~~~~~~~~fD~I~~npp~~~~~~  138 (230)
T 3evz_A          116 IKGVVEGTFDVIFSAPPYYDKPL  138 (230)
T ss_dssp             STTTCCSCEEEEEECCCCC----
T ss_pred             hhhcccCceeEEEECCCCcCCcc
Confidence               33358999999999987543

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.57  E-value=2.3e-15  Score=119.56  Aligned_cols=96  Identities=23%  Similarity=0.286  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           15 NQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        15 ~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      +..+.+.++..+. ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++...++.++++++++|+.+.+.
T Consensus        62 ~~~~~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  141 (241)
T 3gdh_A           62 PEKIAEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS  141 (241)
T ss_dssp             CHHHHHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHHHHHhhhccCCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc
Confidence            3445566555442 236889999999999999999998899999999999999999999988875689999999988754


Q ss_pred             -CCcceeecccCcccchH
Q 047897           94 -PQFDLVVANIPYGISSP  110 (232)
Q Consensus        94 -~~~D~Vi~n~p~~~~~~  110 (232)
                       .+||+|++|+||+....
T Consensus       142 ~~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          142 FLKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             GCCCSEEEECCCCSSGGG
T ss_pred             cCCCCEEEECCCcCCcch
Confidence             38999999999987543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.57  E-value=8e-15  Score=123.18  Aligned_cols=96  Identities=23%  Similarity=0.330  Sum_probs=85.2

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      ...++.+++.++..+.+.++.+|||+|||+|.++..++...   .+++|+|+|+.+++.|++++...|+. +++++++|+
T Consensus       185 a~l~~~la~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~  263 (354)
T 3tma_A          185 GSLTPVLAQALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADA  263 (354)
T ss_dssp             CSCCHHHHHHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCG
T ss_pred             CCcCHHHHHHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCCh
Confidence            34568899999999999899999999999999999999843   89999999999999999999999885 899999999


Q ss_pred             CCCCC--CCcceeecccCcccc
Q 047897           89 LKTEF--PQFDLVVANIPYGIS  108 (232)
Q Consensus        89 ~~~~~--~~~D~Vi~n~p~~~~  108 (232)
                      .+++.  +.||+|++|+||+..
T Consensus       264 ~~~~~~~~~~D~Ii~npPyg~r  285 (354)
T 3tma_A          264 RHLPRFFPEVDRILANPPHGLR  285 (354)
T ss_dssp             GGGGGTCCCCSEEEECCCSCC-
T ss_pred             hhCccccCCCCEEEECCCCcCc
Confidence            99764  368999999999764

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.57  E-value=7e-15  Score=119.89  Aligned_cols=94  Identities=24%  Similarity=0.380  Sum_probs=78.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      .+++.+++.+...++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++.++++++++|+.+...++
T Consensus       110 ~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~  189 (284)
T 1nv8_A          110 ELVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEK  189 (284)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGG
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccc
Confidence            35556665554346679999999999999999985 78999999999999999999999888667999999998843347


Q ss_pred             c---ceeecccCcccchH
Q 047897           96 F---DLVVANIPYGISSP  110 (232)
Q Consensus        96 ~---D~Vi~n~p~~~~~~  110 (232)
                      |   |+|++|+||.....
T Consensus       190 f~~~D~IvsnPPyi~~~~  207 (284)
T 1nv8_A          190 FASIEMILSNPPYVKSSA  207 (284)
T ss_dssp             TTTCCEEEECCCCBCGGG
T ss_pred             cCCCCEEEEcCCCCCccc
Confidence            8   99999999987653

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.57  E-value=9.3e-15  Score=112.87  Aligned_cols=97  Identities=20%  Similarity=0.277  Sum_probs=74.8

Q ss_pred             cCCCcccccCCHHHHHHHHHhc---CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897            5 HKSKGQHILTNQRVLDSIVRKS---SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDR   80 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~---~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~   80 (232)
                      +..++| |.+++.+.+.++..+   ...++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++++.      +
T Consensus        24 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~   96 (200)
T 1ne2_A           24 KNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------G   96 (200)
T ss_dssp             -------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------T
T ss_pred             ccceee-cCCCHHHHHHHHHHHHhcCCCCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------C
Confidence            334455 566778877777655   34577899999999999999999864 479999999999999999874      5


Q ss_pred             EEEEEcCCCCCCCCCcceeecccCcccch
Q 047897           81 LNVISKDALKTEFPQFDLVVANIPYGISS  109 (232)
Q Consensus        81 ~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~  109 (232)
                      ++++++|+.+++ ++||+|++|+||+...
T Consensus        97 ~~~~~~d~~~~~-~~~D~v~~~~p~~~~~  124 (200)
T 1ne2_A           97 VNFMVADVSEIS-GKYDTWIMNPPFGSVV  124 (200)
T ss_dssp             SEEEECCGGGCC-CCEEEEEECCCC----
T ss_pred             CEEEECcHHHCC-CCeeEEEECCCchhcc
Confidence            899999999876 6899999999998764

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.57  E-value=7.9e-15  Score=117.97  Aligned_cols=86  Identities=24%  Similarity=0.407  Sum_probs=73.4

Q ss_pred             HHhcCCC-CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCc
Q 047897           23 VRKSSIN-PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQF   96 (232)
Q Consensus        23 ~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~   96 (232)
                      ...+.+. ++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...++.++++++++|+.+..    ..+|
T Consensus        41 ~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~f  120 (259)
T 3lpm_A           41 AKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERA  120 (259)
T ss_dssp             HHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCE
T ss_pred             HHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCc
Confidence            3445667 78999999999999999999854 4999999999999999999999888778999999998875    3489


Q ss_pred             ceeecccCcccc
Q 047897           97 DLVVANIPYGIS  108 (232)
Q Consensus        97 D~Vi~n~p~~~~  108 (232)
                      |+|++|+||...
T Consensus       121 D~Ii~npPy~~~  132 (259)
T 3lpm_A          121 DIVTCNPPYFAT  132 (259)
T ss_dssp             EEEEECCCC---
T ss_pred             cEEEECCCCCCC
Confidence            999999999655

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.55  E-value=3.9e-14  Score=110.05  Aligned_cols=93  Identities=18%  Similarity=0.269  Sum_probs=82.5

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +...+.+...+++.+++.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.+++++...+. ++++++.+|+.+.
T Consensus        59 ~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  137 (210)
T 3lbf_A           59 TISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDL-HNVSTRHGDGWQG  137 (210)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC
T ss_pred             EeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCC-CceEEEECCcccC
Confidence            445689999999999999999999999999999999999889999999999999999999998887 4799999999886


Q ss_pred             CC--CCcceeecccCc
Q 047897           92 EF--PQFDLVVANIPY  105 (232)
Q Consensus        92 ~~--~~~D~Vi~n~p~  105 (232)
                      ..  .+||+|+++.+.
T Consensus       138 ~~~~~~~D~i~~~~~~  153 (210)
T 3lbf_A          138 WQARAPFDAIIVTAAP  153 (210)
T ss_dssp             CGGGCCEEEEEESSBC
T ss_pred             CccCCCccEEEEccch
Confidence            54  379999987543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.55  E-value=5.9e-14  Score=108.97  Aligned_cols=93  Identities=14%  Similarity=0.214  Sum_probs=82.0

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .++.+.+...+++.+.+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++...+++++++++.+|+.+.
T Consensus        37 ~~~~~~~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  116 (204)
T 3njr_A           37 QITKSPMRALTLAALAPRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAA  116 (204)
T ss_dssp             CCCCHHHHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGG
T ss_pred             CCCcHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhh
Confidence            45667888889999998899999999999999999999988999999999999999999999888855899999999883


Q ss_pred             -C-CCCcceeecccC
Q 047897           92 -E-FPQFDLVVANIP  104 (232)
Q Consensus        92 -~-~~~~D~Vi~n~p  104 (232)
                       + .+.||+|+++..
T Consensus       117 ~~~~~~~D~v~~~~~  131 (204)
T 3njr_A          117 LADLPLPEAVFIGGG  131 (204)
T ss_dssp             GTTSCCCSEEEECSC
T ss_pred             cccCCCCCEEEECCc
Confidence             3 247999998753

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.55  E-value=1.5e-13  Score=106.44  Aligned_cols=99  Identities=15%  Similarity=0.206  Sum_probs=84.9

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +.+.+...+++.+.+.++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...++ ++++++.+|+.+.
T Consensus        24 ~~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~  102 (204)
T 3e05_A           24 TKQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEG  102 (204)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTT
T ss_pred             ChHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhh
Confidence            667888899999999999999999999999999999854  8999999999999999999998887 6899999999765


Q ss_pred             CC--CCcceeecccCcccchHHHH
Q 047897           92 EF--PQFDLVVANIPYGISSPLVA  113 (232)
Q Consensus        92 ~~--~~~D~Vi~n~p~~~~~~~l~  113 (232)
                      ..  +.||+|+++.+.+.....+.
T Consensus       103 ~~~~~~~D~i~~~~~~~~~~~~l~  126 (204)
T 3e05_A          103 LDDLPDPDRVFIGGSGGMLEEIID  126 (204)
T ss_dssp             CTTSCCCSEEEESCCTTCHHHHHH
T ss_pred             hhcCCCCCEEEECCCCcCHHHHHH
Confidence            33  58999999887664444443

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.55  E-value=4e-14  Score=107.86  Aligned_cols=79  Identities=23%  Similarity=0.296  Sum_probs=68.7

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---CCCCcceeeccc
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---EFPQFDLVVANI  103 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---~~~~~D~Vi~n~  103 (232)
                      .+.++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++...++ ++++++++|+.++   ..++||+|++|+
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~   97 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNL   97 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence            356789999999999999999999889999999999999999999998887 6899999888773   334799999997


Q ss_pred             Ccc
Q 047897          104 PYG  106 (232)
Q Consensus       104 p~~  106 (232)
                      +|.
T Consensus        98 ~~~  100 (185)
T 3mti_A           98 GYL  100 (185)
T ss_dssp             C--
T ss_pred             CCC
Confidence            664

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.55  E-value=2.2e-14  Score=121.62  Aligned_cols=94  Identities=17%  Similarity=0.335  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC----------------------------------------Ce
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS----------------------------------------KK   54 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~----------------------------------------~~   54 (232)
                      .+.+++.|+...++.++..|||+|||+|.++..++..+                                        .+
T Consensus       180 ~e~lAa~ll~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  259 (385)
T 3ldu_A          180 RETLAAGLIYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK  259 (385)
T ss_dssp             CHHHHHHHHHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred             cHHHHHHHHHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence            47899999999999899999999999999999887632                                        47


Q ss_pred             EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCcccc
Q 047897           55 VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        55 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~  108 (232)
                      |+|+|+|+.+++.|++|+...|+.+++++.++|+.+++.+ ++|+|++||||...
T Consensus       260 V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~r  314 (385)
T 3ldu_A          260 IYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGER  314 (385)
T ss_dssp             EEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCS
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCc
Confidence            9999999999999999999999866899999999998764 79999999999743

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.55  E-value=3.2e-14  Score=120.45  Aligned_cols=94  Identities=20%  Similarity=0.359  Sum_probs=83.8

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC----------------------------------------Ce
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS----------------------------------------KK   54 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~----------------------------------------~~   54 (232)
                      .+.+++.|+...++.++..+||++||+|.++.+++..+                                        .+
T Consensus       179 ~e~LAaall~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  258 (384)
T 3ldg_A          179 KENMAAAIILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLD  258 (384)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCce
Confidence            47899999999999999999999999999998887622                                        35


Q ss_pred             EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCcccc
Q 047897           55 VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        55 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~  108 (232)
                      |+|+|+|+.+++.|++|+...|+.++++++++|+.+++.+ +||+|++||||+..
T Consensus       259 v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~r  313 (384)
T 3ldg_A          259 ISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGER  313 (384)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTT
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhc
Confidence            9999999999999999999999877799999999998764 79999999999743

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.55  E-value=2.8e-14  Score=121.25  Aligned_cols=94  Identities=22%  Similarity=0.398  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC----------------------------------------Ce
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS----------------------------------------KK   54 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~----------------------------------------~~   54 (232)
                      .+.+++.++...++.++..|||++||+|.++..++..+                                        .+
T Consensus       186 ~e~lAa~ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~  265 (393)
T 3k0b_A          186 KETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLN  265 (393)
T ss_dssp             CHHHHHHHHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCC
T ss_pred             cHHHHHHHHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCce
Confidence            48899999999999999999999999999998887622                                        35


Q ss_pred             EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCcccc
Q 047897           55 VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPYGIS  108 (232)
Q Consensus        55 v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~~~~  108 (232)
                      |+|+|+|+.+++.|++|+...|+.++++++++|+.+.+.+ +||+|++||||+..
T Consensus       266 V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~r  320 (393)
T 3k0b_A          266 IIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGER  320 (393)
T ss_dssp             EEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCS
T ss_pred             EEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccc
Confidence            9999999999999999999999876799999999998764 79999999999754

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.54  E-value=6.1e-14  Score=120.82  Aligned_cols=100  Identities=19%  Similarity=0.283  Sum_probs=85.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----   92 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----   92 (232)
                      .+++.+++.++..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++..+++ .+++++++|+.+..    
T Consensus       273 ~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~f~~~d~~~~l~~~~  351 (433)
T 1uwv_A          273 KMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQP  351 (433)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSSG
T ss_pred             HHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEECCHHHHhhhhh
Confidence            4666667777777888999999999999999999889999999999999999999998887 48999999998832    


Q ss_pred             C--CCcceeecccCcccchHHHHHHhc
Q 047897           93 F--PQFDLVVANIPYGISSPLVAKLVY  117 (232)
Q Consensus        93 ~--~~~D~Vi~n~p~~~~~~~l~~~~~  117 (232)
                      .  .+||+|++|+|+....+.+..+..
T Consensus       352 ~~~~~fD~Vv~dPPr~g~~~~~~~l~~  378 (433)
T 1uwv_A          352 WAKNGFDKVLLDPARAGAAGVMQQIIK  378 (433)
T ss_dssp             GGTTCCSEEEECCCTTCCHHHHHHHHH
T ss_pred             hhcCCCCEEEECCCCccHHHHHHHHHh
Confidence            2  379999999999877766665554

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.54  E-value=7.6e-14  Score=111.71  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---CC-----CCccee
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---EF-----PQFDLV   99 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---~~-----~~~D~V   99 (232)
                      ++.+|||+|||+|.++..++..  +.+|+|+|+|+.+++.|++++...++.++++++++|+.+.   +.     .+||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            4679999999999999998873  6899999999999999999999888766799999997652   22     369999


Q ss_pred             ecccCcccch
Q 047897          100 VANIPYGISS  109 (232)
Q Consensus       100 i~n~p~~~~~  109 (232)
                      ++|+||+...
T Consensus       145 ~~npp~~~~~  154 (254)
T 2h00_A          145 MCNPPFFANQ  154 (254)
T ss_dssp             EECCCCC---
T ss_pred             EECCCCccCc
Confidence            9999998654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.54  E-value=1.7e-14  Score=109.84  Aligned_cols=94  Identities=23%  Similarity=0.315  Sum_probs=79.7

Q ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +.+.+.+.+++.+. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.|++++...++.++++++++|+.+.
T Consensus        27 ~~~~~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  106 (187)
T 2fhp_A           27 TTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRA  106 (187)
T ss_dssp             CCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHH
Confidence            34678888888774 4578899999999999999888754 799999999999999999999887756899999999874


Q ss_pred             C------CCCcceeecccCccc
Q 047897           92 E------FPQFDLVVANIPYGI  107 (232)
Q Consensus        92 ~------~~~~D~Vi~n~p~~~  107 (232)
                      .      ..+||+|++|+||+.
T Consensus       107 ~~~~~~~~~~fD~i~~~~~~~~  128 (187)
T 2fhp_A          107 LEQFYEEKLQFDLVLLDPPYAK  128 (187)
T ss_dssp             HHHHHHTTCCEEEEEECCCGGG
T ss_pred             HHHHHhcCCCCCEEEECCCCCc
Confidence            2      358999999999763

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.54  E-value=7.2e-14  Score=111.71  Aligned_cols=91  Identities=18%  Similarity=0.287  Sum_probs=80.6

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ..+..++.+++.+.+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...++.++++++.+|+.+.+
T Consensus        20 ~~~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~   99 (256)
T 1nkv_A           20 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   99 (256)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC
Confidence            34788999999999889999999999999999999984 67999999999999999999998887668999999999876


Q ss_pred             C-CCcceeecccC
Q 047897           93 F-PQFDLVVANIP  104 (232)
Q Consensus        93 ~-~~~D~Vi~n~p  104 (232)
                      . .+||+|+++-.
T Consensus       100 ~~~~fD~V~~~~~  112 (256)
T 1nkv_A          100 ANEKCDVAACVGA  112 (256)
T ss_dssp             CSSCEEEEEEESC
T ss_pred             cCCCCCEEEECCC
Confidence            5 47999998543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.54  E-value=2.3e-14  Score=115.40  Aligned_cols=85  Identities=20%  Similarity=0.301  Sum_probs=71.7

Q ss_pred             HhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh---cCCCccEEEEEcCCCCC-------
Q 047897           24 RKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD---SGFHDRLNVISKDALKT-------   91 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~D~~~~-------   91 (232)
                      ..+...++.+|||+|||+|.++..++..  ..+|+|+|+++.+++.|++++..   .++.++++++++|+.+.       
T Consensus        30 ~~~~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~  109 (260)
T 2ozv_A           30 SLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEA  109 (260)
T ss_dssp             HTCCCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHT
T ss_pred             HHhcccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhh
Confidence            4455667889999999999999999984  57999999999999999999988   77766899999999887       


Q ss_pred             --CCCCcceeecccCcccc
Q 047897           92 --EFPQFDLVVANIPYGIS  108 (232)
Q Consensus        92 --~~~~~D~Vi~n~p~~~~  108 (232)
                        +..+||+|++|+||...
T Consensus       110 ~~~~~~fD~Vv~nPPy~~~  128 (260)
T 2ozv_A          110 GLPDEHFHHVIMNPPYNDA  128 (260)
T ss_dssp             TCCTTCEEEEEECCCC---
T ss_pred             ccCCCCcCEEEECCCCcCC
Confidence              13479999999999875

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.53  E-value=2.7e-14  Score=107.99  Aligned_cols=91  Identities=19%  Similarity=0.331  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-C
Q 047897           16 QRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-E   92 (232)
Q Consensus        16 ~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~   92 (232)
                      ..+.+.+++.+. ..++.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.+++++...++.++++++.+|+.+. +
T Consensus        16 ~~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~   95 (177)
T 2esr_A           16 DKVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAID   95 (177)
T ss_dssp             --CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHH
Confidence            456677777775 567889999999999999999886 4699999999999999999999888766899999999873 2


Q ss_pred             --CCCcceeecccCcc
Q 047897           93 --FPQFDLVVANIPYG  106 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~  106 (232)
                        ...||+|++|+||+
T Consensus        96 ~~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           96 CLTGRFDLVFLDPPYA  111 (177)
T ss_dssp             HBCSCEEEEEECCSSH
T ss_pred             hhcCCCCEEEECCCCC
Confidence              24799999999985

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.52  E-value=8.3e-14  Score=116.53  Aligned_cols=99  Identities=14%  Similarity=0.254  Sum_probs=79.6

Q ss_pred             CCCcccccCCHHHHHHHHHhc----CCCCCCEEEEEcCCccHhHHHHHhcC-------CeEEEEEcCHHHHHHHHHHHhh
Q 047897            6 KSKGQHILTNQRVLDSIVRKS----SINPDDTVLEIGPGTGNLTLKLLEVS-------KKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~----~~~~~~~vLDiG~G~G~~t~~l~~~~-------~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      +.+|+.| +++.+...+...+    +..++.+|||+|||+|.++..+++..       .+++|+|+++.+++.|+.++..
T Consensus       103 ~~~g~~~-TP~~i~~~~~~ll~~l~~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~  181 (344)
T 2f8l_A          103 IQVNHQM-TPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  181 (344)
T ss_dssp             CCGGGCC-CCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             cccCcCC-ChHHHHHHHHHHHHHhcCCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHh
Confidence            4578855 7677765544433    44567899999999999999988732       7899999999999999999988


Q ss_pred             cCCCccEEEEEcCCCCCCC-CCcceeecccCccc
Q 047897           75 SGFHDRLNVISKDALKTEF-PQFDLVVANIPYGI  107 (232)
Q Consensus        75 ~~~~~~~~~~~~D~~~~~~-~~~D~Vi~n~p~~~  107 (232)
                      .|.  ++.++++|++.... ..||+|++|+||+.
T Consensus       182 ~g~--~~~i~~~D~l~~~~~~~fD~Ii~NPPfg~  213 (344)
T 2f8l_A          182 QRQ--KMTLLHQDGLANLLVDPVDVVISDLPVGY  213 (344)
T ss_dssp             HTC--CCEEEESCTTSCCCCCCEEEEEEECCCSE
T ss_pred             CCC--CceEEECCCCCccccCCccEEEECCCCCC
Confidence            776  58999999987543 48999999999854

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.51  E-value=8.9e-14  Score=112.98  Aligned_cols=85  Identities=22%  Similarity=0.306  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHH-Hh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKL-LE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l-~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+++.....+++.++++|||||||+|.++..+ ++ .+++|+|+|+|+++++.|++++...|+ ++++++++|+.+++..
T Consensus       109 ~l~~~E~~la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~d~  187 (298)
T 3fpf_A          109 ELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVIDGL  187 (298)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGGGC
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCCCC
Confidence            45555557788999999999999999877554 44 689999999999999999999998888 7999999999998867


Q ss_pred             Ccceeecc
Q 047897           95 QFDLVVAN  102 (232)
Q Consensus        95 ~~D~Vi~n  102 (232)
                      +||+|+++
T Consensus       188 ~FDvV~~~  195 (298)
T 3fpf_A          188 EFDVLMVA  195 (298)
T ss_dssp             CCSEEEEC
T ss_pred             CcCEEEEC
Confidence            89999864

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.51  E-value=1.4e-14  Score=112.14  Aligned_cols=92  Identities=22%  Similarity=0.319  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhcCCC-CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~   92 (232)
                      ..+.+.+++.+... ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++. ++++++++|+.+..
T Consensus        38 ~~~~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~  117 (201)
T 2ift_A           38 DRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  117 (201)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHH
Confidence            34555666555432 67899999999999999877754 69999999999999999999988863 47999999987742


Q ss_pred             ----CCC-cceeecccCccc
Q 047897           93 ----FPQ-FDLVVANIPYGI  107 (232)
Q Consensus        93 ----~~~-~D~Vi~n~p~~~  107 (232)
                          ..+ ||+|++|+||+.
T Consensus       118 ~~~~~~~~fD~I~~~~~~~~  137 (201)
T 2ift_A          118 KQPQNQPHFDVVFLDPPFHF  137 (201)
T ss_dssp             TSCCSSCCEEEEEECCCSSS
T ss_pred             HhhccCCCCCEEEECCCCCC
Confidence                247 999999999863

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.50  E-value=1.2e-13  Score=112.08  Aligned_cols=92  Identities=20%  Similarity=0.341  Sum_probs=78.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-C
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-F   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~   93 (232)
                      .+++.+++.+. .++.+|||+|||+|.++..++.  ...+|+|+|+|+.+++.+++++...+++ +++++++|+.+.. .
T Consensus        97 ~l~~~~l~~~~-~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~~~~~~~  174 (276)
T 2b3t_A           97 CLVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDWFSALAG  174 (276)
T ss_dssp             HHHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCSTTGGGTT
T ss_pred             HHHHHHHHhcc-cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcchhhhccc
Confidence            36666777665 5678999999999999999986  3689999999999999999999988874 7999999998753 3


Q ss_pred             CCcceeecccCcccchH
Q 047897           94 PQFDLVVANIPYGISSP  110 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~~~  110 (232)
                      .+||+|++|+||.....
T Consensus       175 ~~fD~Iv~npPy~~~~~  191 (276)
T 2b3t_A          175 QQFAMIVSNPPYIDEQD  191 (276)
T ss_dssp             CCEEEEEECCCCBCTTC
T ss_pred             CCccEEEECCCCCCccc
Confidence            48999999999987643

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.50  E-value=8.9e-14  Score=112.66  Aligned_cols=100  Identities=17%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             CCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE
Q 047897            6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNV   83 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~   83 (232)
                      ...+..|+.++...+.......+.++++|||+|||+|.++..+++.  ..+|+|+|+++.+++.|++++..+++ +++.+
T Consensus        95 ~~~~~~f~~~~~~~e~~~~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l-~~~~~  173 (272)
T 3a27_A           95 LDVAKIMWSQGNIEERKRMAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKL-NNVIP  173 (272)
T ss_dssp             EETTTSCCCGGGHHHHHHHHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTC-SSEEE
T ss_pred             EechhEEECCCchHHHHHHHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEE
Confidence            3444555666655555554555678899999999999999999985  45999999999999999999999887 47999


Q ss_pred             EEcCCCCCCC-CCcceeecccCcc
Q 047897           84 ISKDALKTEF-PQFDLVVANIPYG  106 (232)
Q Consensus        84 ~~~D~~~~~~-~~~D~Vi~n~p~~  106 (232)
                      +++|+.+.+. ..||+|++|+|+.
T Consensus       174 ~~~d~~~~~~~~~~D~Vi~d~p~~  197 (272)
T 3a27_A          174 ILADNRDVELKDVADRVIMGYVHK  197 (272)
T ss_dssp             EESCGGGCCCTTCEEEEEECCCSS
T ss_pred             EECChHHcCccCCceEEEECCccc
Confidence            9999998843 3799999999973

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.50  E-value=2.6e-14  Score=110.81  Aligned_cols=91  Identities=20%  Similarity=0.254  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCC-CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-C
Q 047897           16 QRVLDSIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-E   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~   92 (232)
                      ..+.+.+++.+... ++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++++...++ ++++++++|+.+. +
T Consensus        39 ~~~~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~  117 (202)
T 2fpo_A           39 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLA  117 (202)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHS
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHh
Confidence            45666666665432 67899999999999999877754 5999999999999999999998887 5899999998773 3


Q ss_pred             C--CCcceeecccCccc
Q 047897           93 F--PQFDLVVANIPYGI  107 (232)
Q Consensus        93 ~--~~~D~Vi~n~p~~~  107 (232)
                      .  ..||+|++|+||+.
T Consensus       118 ~~~~~fD~V~~~~p~~~  134 (202)
T 2fpo_A          118 QKGTPHNIVFVDPPFRR  134 (202)
T ss_dssp             SCCCCEEEEEECCSSST
T ss_pred             hcCCCCCEEEECCCCCC
Confidence            2  47999999999874

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=99.50  E-value=5.3e-14  Score=124.05  Aligned_cols=101  Identities=17%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-----------------CCeEEEEEcCHHHHHH
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-----------------SKKVHAIEIDERMVEI   67 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-----------------~~~v~~vD~~~~~~~~   67 (232)
                      ++..|| |++++.+++.|++.+.+.++ +|||.+||+|.+...+++.                 ...++|+|+++.++..
T Consensus       221 ~k~~G~-fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~l  298 (544)
T 3khk_A          221 GKQGGQ-YYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKL  298 (544)
T ss_dssp             TCCSTT-TCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHH
T ss_pred             CccCCe-EeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHH
Confidence            467788 77889999999999987666 9999999999988877541                 4589999999999999


Q ss_pred             HHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCccc
Q 047897           68 LNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPYGI  107 (232)
Q Consensus        68 a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~~~  107 (232)
                      |+.++..+|+..++.+.++|.+..+.   ..||+|++||||..
T Consensus       299 A~~Nl~l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          299 AAMNMVIRGIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             HHHHHHHTTCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSC
T ss_pred             HHHHHHHhCCCcccceeccchhcCcccccccccEEEECCCcCC
Confidence            99999988876565568999887653   37999999999985

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.50  E-value=4.6e-13  Score=109.84  Aligned_cols=88  Identities=16%  Similarity=0.099  Sum_probs=78.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ..++.+++.+++.++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++.++++++.+|+.++ .++
T Consensus        59 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~  137 (302)
T 3hem_A           59 AKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP  137 (302)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred             HHHHHHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence            35667888888889999999999999999999985 7999999999999999999999988867899999999988 568


Q ss_pred             cceeecccCc
Q 047897           96 FDLVVANIPY  105 (232)
Q Consensus        96 ~D~Vi~n~p~  105 (232)
                      ||+|+++..+
T Consensus       138 fD~v~~~~~~  147 (302)
T 3hem_A          138 VDRIVSLGAF  147 (302)
T ss_dssp             CSEEEEESCG
T ss_pred             ccEEEEcchH
Confidence            9999987543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.49  E-value=2e-13  Score=103.07  Aligned_cols=94  Identities=22%  Similarity=0.325  Sum_probs=79.9

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+.+.+.+++.+.+.++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.+++++...+.+.++ ++++|+.+
T Consensus         8 ~t~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~   86 (178)
T 3hm2_A            8 LTKQHVRALAISALAPKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR   86 (178)
T ss_dssp             SHHHHHHHHHHHHHCCCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred             ccHHHHHHHHHHHhcccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence            355778888999998889999999999999999999884  689999999999999999999988875589 88999854


Q ss_pred             -CCC--CCcceeecccCccc
Q 047897           91 -TEF--PQFDLVVANIPYGI  107 (232)
Q Consensus        91 -~~~--~~~D~Vi~n~p~~~  107 (232)
                       ++.  ++||+|+++.+.+.
T Consensus        87 ~~~~~~~~~D~i~~~~~~~~  106 (178)
T 3hm2_A           87 AFDDVPDNPDVIFIGGGLTA  106 (178)
T ss_dssp             GGGGCCSCCSEEEECC-TTC
T ss_pred             hhhccCCCCCEEEECCcccH
Confidence             333  57999999877655

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=99.49  E-value=1.3e-13  Score=121.74  Aligned_cols=103  Identities=15%  Similarity=0.254  Sum_probs=83.5

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--------------------CCeEEEEEcCHHH
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--------------------SKKVHAIEIDERM   64 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--------------------~~~v~~vD~~~~~   64 (232)
                      ++..|| |++++.+++.|++.+.+.++.+|+|+|||+|.++..+++.                    ...++|+|+++.+
T Consensus       145 ~~~~G~-fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~  223 (541)
T 2ar0_A          145 KSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT  223 (541)
T ss_dssp             -----C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred             cccCCe-eeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHH
Confidence            356787 6688999999999998888899999999999999888762                    1379999999999


Q ss_pred             HHHHHHHHhhcCCCc----cEEEEEcCCCCCC---CCCcceeecccCcccc
Q 047897           65 VEILNRRAADSGFHD----RLNVISKDALKTE---FPQFDLVVANIPYGIS  108 (232)
Q Consensus        65 ~~~a~~~~~~~~~~~----~~~~~~~D~~~~~---~~~~D~Vi~n~p~~~~  108 (232)
                      ++.|+.++..+|...    ++.+.++|++..+   ...||+|++||||...
T Consensus       224 ~~lA~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          224 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             HHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTC
T ss_pred             HHHHHHHHHHhCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccc
Confidence            999999998887742    2789999998753   3489999999999865

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.49  E-value=4.9e-14  Score=106.28  Aligned_cols=86  Identities=23%  Similarity=0.242  Sum_probs=69.5

Q ss_pred             ccCCHHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      .++++...+.+++.+..  .++.+|||+|||+|.++..+++.+ +|+|+|+|+.+++.          .++++++++|+.
T Consensus         3 v~~P~~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~   71 (170)
T 3q87_B            3 WYEPGEDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES----------HRGGNLVRADLL   71 (170)
T ss_dssp             SCCCCHHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT----------CSSSCEEECSTT
T ss_pred             ccCcCccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc----------ccCCeEEECChh
Confidence            34455556666666544  567799999999999999999987 99999999999987          157899999998


Q ss_pred             CCCC-CCcceeecccCcccc
Q 047897           90 KTEF-PQFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~~~-~~~D~Vi~n~p~~~~  108 (232)
                      +... ++||+|++|+||+..
T Consensus        72 ~~~~~~~fD~i~~n~~~~~~   91 (170)
T 3q87_B           72 CSINQESVDVVVFNPPYVPD   91 (170)
T ss_dssp             TTBCGGGCSEEEECCCCBTT
T ss_pred             hhcccCCCCEEEECCCCccC
Confidence            7432 489999999999853

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.49  E-value=2.6e-13  Score=102.64  Aligned_cols=102  Identities=20%  Similarity=0.285  Sum_probs=86.0

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ...+.+.+.+++.+...++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++...++ ++++++++|+.+ +
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~-~   95 (183)
T 2yxd_A           18 ITKEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED-V   95 (183)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-H
T ss_pred             cCHHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-c
Confidence            45578889999999888899999999999999999999888999999999999999999998887 579999999987 3


Q ss_pred             C--CCcceeecccCcccchHHHHHHhc
Q 047897           93 F--PQFDLVVANIPYGISSPLVAKLVY  117 (232)
Q Consensus        93 ~--~~~D~Vi~n~p~~~~~~~l~~~~~  117 (232)
                      .  ++||+|+++.+ ......+..+..
T Consensus        96 ~~~~~~D~i~~~~~-~~~~~~l~~~~~  121 (183)
T 2yxd_A           96 LDKLEFNKAFIGGT-KNIEKIIEILDK  121 (183)
T ss_dssp             GGGCCCSEEEECSC-SCHHHHHHHHHH
T ss_pred             ccCCCCcEEEECCc-ccHHHHHHHHhh
Confidence            3  37999999988 444445544443

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.49  E-value=2.9e-13  Score=109.26  Aligned_cols=91  Identities=27%  Similarity=0.422  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      ..+++.+++.+++.++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.+++++...++.++++++.+|+.+++++
T Consensus        47 ~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  126 (273)
T 3bus_A           47 DRLTDEMIALLDVRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFE  126 (273)
T ss_dssp             HHHHHHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCC
Confidence            35677888888888999999999999999999988 57899999999999999999998888767899999999988764


Q ss_pred             --CcceeecccCcc
Q 047897           95 --QFDLVVANIPYG  106 (232)
Q Consensus        95 --~~D~Vi~n~p~~  106 (232)
                        +||+|+++-.++
T Consensus       127 ~~~fD~v~~~~~l~  140 (273)
T 3bus_A          127 DASFDAVWALESLH  140 (273)
T ss_dssp             TTCEEEEEEESCTT
T ss_pred             CCCccEEEEechhh
Confidence              799999875543

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.48  E-value=4.5e-13  Score=107.90  Aligned_cols=92  Identities=22%  Similarity=0.316  Sum_probs=79.7

Q ss_pred             CHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           15 NQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        15 ~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      .+.....+++.+. +.++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++++...+++++++++.+|+.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  109 (267)
T 3kkz_A           30 SPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP  109 (267)
T ss_dssp             CHHHHHHHHTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC
T ss_pred             CHHHHHHHHHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC
Confidence            4667777887776 678899999999999999999985 45999999999999999999998888778999999999887


Q ss_pred             CC--CcceeecccCcc
Q 047897           93 FP--QFDLVVANIPYG  106 (232)
Q Consensus        93 ~~--~~D~Vi~n~p~~  106 (232)
                      .+  +||+|+++.+++
T Consensus       110 ~~~~~fD~i~~~~~~~  125 (267)
T 3kkz_A          110 FRNEELDLIWSEGAIY  125 (267)
T ss_dssp             CCTTCEEEEEESSCGG
T ss_pred             CCCCCEEEEEEcCCce
Confidence            53  799999876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.48  E-value=3.1e-13  Score=106.46  Aligned_cols=95  Identities=24%  Similarity=0.283  Sum_probs=81.7

Q ss_pred             CcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897            8 KGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      .||+ ...+.+++.+++.+.+.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+   +++++.+|
T Consensus        49 ~~~~-~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d  124 (231)
T 1vbf_A           49 PGIN-TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYN---NIKLILGD  124 (231)
T ss_dssp             TTEE-ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESC
T ss_pred             CCCc-cCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECC
Confidence            4565 5568999999999998899999999999999999999977999999999999999999997654   69999999


Q ss_pred             CCCC-C-CCCcceeecccCcc
Q 047897           88 ALKT-E-FPQFDLVVANIPYG  106 (232)
Q Consensus        88 ~~~~-~-~~~~D~Vi~n~p~~  106 (232)
                      +.+. + ..+||+|+++.+++
T Consensus       125 ~~~~~~~~~~fD~v~~~~~~~  145 (231)
T 1vbf_A          125 GTLGYEEEKPYDRVVVWATAP  145 (231)
T ss_dssp             GGGCCGGGCCEEEEEESSBBS
T ss_pred             cccccccCCCccEEEECCcHH
Confidence            9873 2 24799999876543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=99.48  E-value=1.5e-13  Score=121.05  Aligned_cols=103  Identities=19%  Similarity=0.213  Sum_probs=86.7

Q ss_pred             cCCCcccccCCHHHHHHHHHhcC----CCCCCEEEEEcCCccHhHHHHHhc-----CCeEEEEEcCHHHHHHHHHHHhhc
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSS----INPDDTVLEIGPGTGNLTLKLLEV-----SKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~----~~~~~~vLDiG~G~G~~t~~l~~~-----~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      .|+.|| |+|++.+++.|++.+.    ..++.+|+|.+||+|.+...+++.     ...++|+|+++.++..|+.++..+
T Consensus       193 ~k~~G~-fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~  271 (542)
T 3lkd_A          193 GKKAGE-FYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH  271 (542)
T ss_dssp             --CCSS-CCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             cccCCe-ecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc
Confidence            567788 7788999999999886    457889999999999998888773     568999999999999999999888


Q ss_pred             CCC-ccEEEEEcCCCCC--C---CCCcceeecccCcccc
Q 047897           76 GFH-DRLNVISKDALKT--E---FPQFDLVVANIPYGIS  108 (232)
Q Consensus        76 ~~~-~~~~~~~~D~~~~--~---~~~~D~Vi~n~p~~~~  108 (232)
                      |.. +++.+.++|.+..  +   ...||+|++||||...
T Consensus       272 gi~~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~  310 (542)
T 3lkd_A          272 GVPIENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAK  310 (542)
T ss_dssp             TCCGGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCC
T ss_pred             CCCcCccceEecceecccccccccccccEEEecCCcCCc
Confidence            875 4789999999876  3   2379999999999743

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.48  E-value=3e-13  Score=108.52  Aligned_cols=90  Identities=19%  Similarity=0.383  Sum_probs=77.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ..-++.+++.+...++.+|||+|||+|.++..+++...+|+|+|+++.+++.+++++...+. ++++++.+|+.+++++ 
T Consensus        23 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~  101 (260)
T 1vl5_A           23 GSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTD  101 (260)
T ss_dssp             CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecHHhCCCCC
Confidence            34556777888888899999999999999999999778999999999999999999988776 4799999999988764 


Q ss_pred             -CcceeecccCcc
Q 047897           95 -QFDLVVANIPYG  106 (232)
Q Consensus        95 -~~D~Vi~n~p~~  106 (232)
                       +||+|+++...+
T Consensus       102 ~~fD~V~~~~~l~  114 (260)
T 1vl5_A          102 ERFHIVTCRIAAH  114 (260)
T ss_dssp             TCEEEEEEESCGG
T ss_pred             CCEEEEEEhhhhH
Confidence             799999975543

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=99.48  E-value=4.9e-13  Score=117.64  Aligned_cols=102  Identities=17%  Similarity=0.269  Sum_probs=86.4

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---------------CCeEEEEEcCHHHHHHHH
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---------------SKKVHAIEIDERMVEILN   69 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---------------~~~v~~vD~~~~~~~~a~   69 (232)
                      +++.|| |+|++.+++.|++.+.+.++++|+|.+||+|.+...+.+.               ...++|+|+++.++..|+
T Consensus       193 ~g~~Gq-fyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~  271 (530)
T 3ufb_A          193 AGDSGE-FYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ  271 (530)
T ss_dssp             SSSCCC-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred             cCcCce-ECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence            456788 7799999999999999999999999999999998777651               246999999999999999


Q ss_pred             HHHhhcCCCccEEEEEcCCCCCCC------CCcceeecccCcccc
Q 047897           70 RRAADSGFHDRLNVISKDALKTEF------PQFDLVVANIPYGIS  108 (232)
Q Consensus        70 ~~~~~~~~~~~~~~~~~D~~~~~~------~~~D~Vi~n~p~~~~  108 (232)
                      .++..+|. +...+.++|.+..+.      ..||+|++||||+..
T Consensus       272 mNl~lhg~-~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~  315 (530)
T 3ufb_A          272 MNLLLHGL-EYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGE  315 (530)
T ss_dssp             HHHHHHTC-SCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCB
T ss_pred             HHHHhcCC-ccccccccccccCchhhhcccccceEEEecCCCCcc
Confidence            99988887 356788999887643      269999999999754

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.48  E-value=9.9e-14  Score=107.57  Aligned_cols=88  Identities=14%  Similarity=0.023  Sum_probs=71.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcC-----------CCccEEEEEc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG-----------FHDRLNVISK   86 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~-----------~~~~~~~~~~   86 (232)
                      .+..+++.+.+.++.+|||+|||+|..+..+++.+.+|+|+|+|+.|++.|+++.....           ...+++++++
T Consensus        10 ~l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   89 (203)
T 1pjz_A           10 DLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG   89 (203)
T ss_dssp             HHHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred             HHHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence            34445566667788999999999999999999988999999999999999999875310           0147999999


Q ss_pred             CCCCCCC---CCcceeecccCc
Q 047897           87 DALKTEF---PQFDLVVANIPY  105 (232)
Q Consensus        87 D~~~~~~---~~~D~Vi~n~p~  105 (232)
                      |+.+++.   ++||+|+++..+
T Consensus        90 d~~~l~~~~~~~fD~v~~~~~l  111 (203)
T 1pjz_A           90 DFFALTARDIGHCAAFYDRAAM  111 (203)
T ss_dssp             CCSSSTHHHHHSEEEEEEESCG
T ss_pred             ccccCCcccCCCEEEEEECcch
Confidence            9999875   379999986543

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.48  E-value=1.8e-13  Score=111.27  Aligned_cols=89  Identities=21%  Similarity=0.237  Sum_probs=76.0

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      .....+.+.+  .++.+|||+|||+|.++..+++.+. +|+|+|+|+.+++.|++++..+++.++++++++|+.++... 
T Consensus       114 ~~~~~l~~~~--~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~  191 (278)
T 2frn_A          114 KERVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGEN  191 (278)
T ss_dssp             HHHHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCS
T ss_pred             HHHHHHHHhC--CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccC
Confidence            4455555554  4688999999999999999999655 69999999999999999999888866799999999988654 


Q ss_pred             CcceeecccCccc
Q 047897           95 QFDLVVANIPYGI  107 (232)
Q Consensus        95 ~~D~Vi~n~p~~~  107 (232)
                      .||+|++|+|+..
T Consensus       192 ~fD~Vi~~~p~~~  204 (278)
T 2frn_A          192 IADRILMGYVVRT  204 (278)
T ss_dssp             CEEEEEECCCSSG
T ss_pred             CccEEEECCchhH
Confidence            7999999999654

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.47  E-value=2.2e-13  Score=107.75  Aligned_cols=100  Identities=21%  Similarity=0.323  Sum_probs=82.1

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ..+...+.+...+...++.+|||||||+|..+..++.  .+.+|+++|+++.+++.|++++...++.++++++.+|+.+.
T Consensus        55 ~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  134 (232)
T 3ntv_A           55 VDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQ  134 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGC
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHH
Confidence            3467777776666666788999999999999999998  67899999999999999999999988866899999999875


Q ss_pred             C----CCCcceeecccCcccchHHHH
Q 047897           92 E----FPQFDLVVANIPYGISSPLVA  113 (232)
Q Consensus        92 ~----~~~~D~Vi~n~p~~~~~~~l~  113 (232)
                      .    ..+||+|+++.+.......+.
T Consensus       135 ~~~~~~~~fD~V~~~~~~~~~~~~l~  160 (232)
T 3ntv_A          135 FENVNDKVYDMIFIDAAKAQSKKFFE  160 (232)
T ss_dssp             HHHHTTSCEEEEEEETTSSSHHHHHH
T ss_pred             HHhhccCCccEEEEcCcHHHHHHHHH
Confidence            3    258999998876544444433

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.47  E-value=6.2e-14  Score=120.15  Aligned_cols=94  Identities=28%  Similarity=0.346  Sum_probs=75.6

Q ss_pred             ccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897            4 FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDR   80 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~   80 (232)
                      .++..|| |.+++.+++.|++.+...++.+|||+|||+|.++..+++   ...+++|+|+|+.+++.|          .+
T Consensus        14 ~~~~~g~-~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~   82 (421)
T 2ih2_A           14 APRSLGR-VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PW   82 (421)
T ss_dssp             --------CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TT
T ss_pred             hcccCce-EeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CC
Confidence            3567788 667899999999999866677999999999999999987   357999999999998776          35


Q ss_pred             EEEEEcCCCCCCC-CCcceeecccCcccc
Q 047897           81 LNVISKDALKTEF-PQFDLVVANIPYGIS  108 (232)
Q Consensus        81 ~~~~~~D~~~~~~-~~~D~Vi~n~p~~~~  108 (232)
                      ++++++|+.+... +.||+|++|+||...
T Consensus        83 ~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~  111 (421)
T 2ih2_A           83 AEGILADFLLWEPGEAFDLILGNPPYGIV  111 (421)
T ss_dssp             EEEEESCGGGCCCSSCEEEEEECCCCCCB
T ss_pred             CcEEeCChhhcCccCCCCEEEECcCccCc
Confidence            8999999998764 489999999999754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.47  E-value=5.3e-13  Score=106.66  Aligned_cols=92  Identities=23%  Similarity=0.320  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHhc-CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           15 NQRVLDSIVRKS-SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        15 ~~~~~~~i~~~~-~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      .+.....+++.+ .+.++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++++...++.++++++++|+.+++
T Consensus        30 ~~~~~~~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~  109 (257)
T 3f4k_A           30 SPEATRKAVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP  109 (257)
T ss_dssp             CHHHHHHHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS
T ss_pred             CHHHHHHHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC
Confidence            356777777776 56778899999999999999999854 4999999999999999999999888777999999998887


Q ss_pred             CC--CcceeecccCcc
Q 047897           93 FP--QFDLVVANIPYG  106 (232)
Q Consensus        93 ~~--~~D~Vi~n~p~~  106 (232)
                      .+  +||+|+++..++
T Consensus       110 ~~~~~fD~v~~~~~l~  125 (257)
T 3f4k_A          110 FQNEELDLIWSEGAIY  125 (257)
T ss_dssp             SCTTCEEEEEEESCSC
T ss_pred             CCCCCEEEEEecChHh
Confidence            54  799999875543

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.47  E-value=5.2e-14  Score=105.49  Aligned_cols=91  Identities=15%  Similarity=0.211  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ....+.+.+++.+..  .++.+|||+|||+|.++..+++.+..|+|+|+|+.+++.+++++...++  +++++++|+.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~  100 (171)
T 1ws6_A           23 SPVRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVF  100 (171)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHH
T ss_pred             CHHHHHHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHH
Confidence            446677777776653  2678999999999999999999777799999999999999999988765  699999999874


Q ss_pred             -C-----CCCcceeecccCcc
Q 047897           92 -E-----FPQFDLVVANIPYG  106 (232)
Q Consensus        92 -~-----~~~~D~Vi~n~p~~  106 (232)
                       +     .++||+|++|+||+
T Consensus       101 ~~~~~~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A          101 LPEAKAQGERFTVAFMAPPYA  121 (171)
T ss_dssp             HHHHHHTTCCEEEEEECCCTT
T ss_pred             HHhhhccCCceEEEEECCCCc
Confidence             2     12699999999985

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.47  E-value=1.6e-13  Score=115.71  Aligned_cols=94  Identities=15%  Similarity=0.194  Sum_probs=78.7

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHHH-------hhcCC-CccEEE
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSK-KVHAIEIDERMVEILNRRA-------ADSGF-HDRLNV   83 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~~-------~~~~~-~~~~~~   83 (232)
                      +.+..+..+++.+++.++++|||||||+|.++..++. .+. +|+|||+++.+++.|+++.       ...|+ .+++++
T Consensus       157 t~~~~i~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          157 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             THHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            4578899999999999999999999999999999886 344 6999999999999998864       33454 258999


Q ss_pred             EEcCCCCCCC----CCcceeecccCccc
Q 047897           84 ISKDALKTEF----PQFDLVVANIPYGI  107 (232)
Q Consensus        84 ~~~D~~~~~~----~~~D~Vi~n~p~~~  107 (232)
                      +++|+.+.++    ..+|+|++|.+|..
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn~~F~  264 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNNFAFG  264 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECCTTCC
T ss_pred             EECcccCCccccccCCccEEEEcccccC
Confidence            9999999875    36899999987653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.46  E-value=5.7e-13  Score=101.40  Aligned_cols=104  Identities=21%  Similarity=0.274  Sum_probs=87.5

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-C
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-T   91 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~   91 (232)
                      ...+.+...+++.+.+.++.+|||+|||+|.++..+++...+|+++|+++.+++.+++++...+..++++++++|+.+ +
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~   95 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (192)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhc
Confidence            456788888899888889999999999999999999987799999999999999999999888775689999999877 3


Q ss_pred             CC-CCcceeecccCcccchHHHHHHh
Q 047897           92 EF-PQFDLVVANIPYGISSPLVAKLV  116 (232)
Q Consensus        92 ~~-~~~D~Vi~n~p~~~~~~~l~~~~  116 (232)
                      +. +.||+|+++.+++.....+..+.
T Consensus        96 ~~~~~~D~v~~~~~~~~~~~~l~~~~  121 (192)
T 1l3i_A           96 CKIPDIDIAVVGGSGGELQEILRIIK  121 (192)
T ss_dssp             TTSCCEEEEEESCCTTCHHHHHHHHH
T ss_pred             ccCCCCCEEEECCchHHHHHHHHHHH
Confidence            32 47999999888665555554443

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.46  E-value=1.9e-13  Score=105.03  Aligned_cols=81  Identities=22%  Similarity=0.336  Sum_probs=70.4

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---CCCcce
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---FPQFDL   98 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---~~~~D~   98 (232)
                      ...+.++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.|++++...++.++++++++|+.+++   .++||+
T Consensus        17 ~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~   96 (197)
T 3eey_A           17 KMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKA   96 (197)
T ss_dssp             HHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEE
T ss_pred             HhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceE
Confidence            334568889999999999999999884   36999999999999999999998887668999999988764   247999


Q ss_pred             eecccCc
Q 047897           99 VVANIPY  105 (232)
Q Consensus        99 Vi~n~p~  105 (232)
                      |++|+||
T Consensus        97 v~~~~~~  103 (197)
T 3eey_A           97 VMFNLGY  103 (197)
T ss_dssp             EEEEESB
T ss_pred             EEEcCCc
Confidence            9999987

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.45  E-value=4.5e-13  Score=107.14  Aligned_cols=92  Identities=28%  Similarity=0.396  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +..+..++..+++.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.|++++...+++++++++++|+.+..
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  158 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI  158 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence            567778889999999999999999999999999985   78999999999999999999998888666999999998753


Q ss_pred             -CCCcceeecccCccc
Q 047897           93 -FPQFDLVVANIPYGI  107 (232)
Q Consensus        93 -~~~~D~Vi~n~p~~~  107 (232)
                       ..+||+|++|+|...
T Consensus       159 ~~~~~D~v~~~~~~~~  174 (255)
T 3mb5_A          159 EEENVDHVILDLPQPE  174 (255)
T ss_dssp             CCCSEEEEEECSSCGG
T ss_pred             CCCCcCEEEECCCCHH
Confidence             237999999988654

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.45  E-value=3.2e-13  Score=105.01  Aligned_cols=89  Identities=24%  Similarity=0.444  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      +.+.+.+++.+...++ +|||+|||+|.++..+++. +.+++|+|+++.+++.+++++...+..++++++++|+.+++.+
T Consensus        30 ~~~~~~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~  108 (219)
T 3dlc_A           30 PIIAENIINRFGITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIE  108 (219)
T ss_dssp             HHHHHHHHHHHCCCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSC
T ss_pred             HHHHHHHHHhcCCCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCC
Confidence            5677888888877666 9999999999999999984 7799999999999999999999888767899999999987754


Q ss_pred             --CcceeecccCc
Q 047897           95 --QFDLVVANIPY  105 (232)
Q Consensus        95 --~~D~Vi~n~p~  105 (232)
                        +||+|+++..+
T Consensus       109 ~~~~D~v~~~~~l  121 (219)
T 3dlc_A          109 DNYADLIVSRGSV  121 (219)
T ss_dssp             TTCEEEEEEESCG
T ss_pred             cccccEEEECchH
Confidence              79999997653

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.45  E-value=2.2e-13  Score=110.26  Aligned_cols=87  Identities=21%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFD   97 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D   97 (232)
                      .++.+..  .+|++|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++|+..+++.++++++++|+.++... .||
T Consensus       117 ~ri~~~~--~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D  194 (278)
T 3k6r_A          117 VRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIAD  194 (278)
T ss_dssp             HHHHHHC--CTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEE
T ss_pred             HHHHHhc--CCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCC
Confidence            3455554  579999999999999999999854 699999999999999999999999988899999999988654 799


Q ss_pred             eeecccCcccc
Q 047897           98 LVVANIPYGIS  108 (232)
Q Consensus        98 ~Vi~n~p~~~~  108 (232)
                      .|+.|+|+...
T Consensus       195 ~Vi~~~p~~~~  205 (278)
T 3k6r_A          195 RILMGYVVRTH  205 (278)
T ss_dssp             EEEECCCSSGG
T ss_pred             EEEECCCCcHH
Confidence            99999987654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.45  E-value=7.5e-13  Score=104.98  Aligned_cols=88  Identities=20%  Similarity=0.434  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +.....+++.+++.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+. ++++++.+|+.+++++ 
T Consensus         7 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~   85 (239)
T 1xxl_A            7 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPD   85 (239)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCT
T ss_pred             CCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEecccccCCCCC
Confidence            55667788888999999999999999999999999888999999999999999999988776 4799999999988764 


Q ss_pred             -CcceeecccC
Q 047897           95 -QFDLVVANIP  104 (232)
Q Consensus        95 -~~D~Vi~n~p  104 (232)
                       +||+|+++..
T Consensus        86 ~~fD~v~~~~~   96 (239)
T 1xxl_A           86 DSFDIITCRYA   96 (239)
T ss_dssp             TCEEEEEEESC
T ss_pred             CcEEEEEECCc
Confidence             7999998754

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.45  E-value=1.6e-14  Score=112.20  Aligned_cols=91  Identities=16%  Similarity=0.298  Sum_probs=58.0

Q ss_pred             HHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           17 RVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        17 ~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      .+++.+++.+.. .++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.+++++...+.  +++++++|+.+.. 
T Consensus        16 ~~~~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~   93 (215)
T 4dzr_A           16 VLVEEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADGIEWLI   93 (215)
T ss_dssp             HHHHHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcchHhhhh
Confidence            355666666654 67889999999999999999995  56999999999999999999987764  6899999998732 


Q ss_pred             C-----CCcceeecccCcccch
Q 047897           93 F-----PQFDLVVANIPYGISS  109 (232)
Q Consensus        93 ~-----~~~D~Vi~n~p~~~~~  109 (232)
                      .     .+||+|++|+||+...
T Consensus        94 ~~~~~~~~fD~i~~npp~~~~~  115 (215)
T 4dzr_A           94 ERAERGRPWHAIVSNPPYIPTG  115 (215)
T ss_dssp             HHHHTTCCBSEEEECCCCCC--
T ss_pred             hhhhccCcccEEEECCCCCCCc
Confidence            2     5799999999997664

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.45  E-value=3.2e-13  Score=104.50  Aligned_cols=80  Identities=28%  Similarity=0.346  Sum_probs=70.3

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYG  106 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~  106 (232)
                      +.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.|++++...+.. +++++.+|+.+...++||+|+++.+++
T Consensus        58 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~fD~i~~~~~~~  136 (205)
T 3grz_A           58 MVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIY-DIALQKTSLLADVDGKFDLIVANILAE  136 (205)
T ss_dssp             CSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCC-CCEEEESSTTTTCCSCEEEEEEESCHH
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeccccccCCCCceEEEECCcHH
Confidence            4578899999999999999998854 59999999999999999999988774 499999999987767999999998875


Q ss_pred             cc
Q 047897          107 IS  108 (232)
Q Consensus       107 ~~  108 (232)
                      ..
T Consensus       137 ~~  138 (205)
T 3grz_A          137 IL  138 (205)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.45  E-value=6.6e-13  Score=109.50  Aligned_cols=86  Identities=20%  Similarity=0.291  Sum_probs=75.4

Q ss_pred             HHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           19 LDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        19 ~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      .+.+++.+. +.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++.++++++.+|+.+.+++  
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence            344667776 778999999999999999999986 8899999999999999999999988867899999999988754  


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      .||+|+++-.
T Consensus       185 ~fD~V~~~~~  194 (312)
T 3vc1_A          185 AVTASWNNES  194 (312)
T ss_dssp             CEEEEEEESC
T ss_pred             CEeEEEECCc
Confidence            8999998643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.45  E-value=4.5e-13  Score=113.24  Aligned_cols=91  Identities=19%  Similarity=0.226  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCc--cEEEEEcCCCCCCC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHD--RLNVISKDALKTEF   93 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~--~~~~~~~D~~~~~~   93 (232)
                      ..+.+++.+...++.+|||+|||+|.++..+++.  +.+|+|+|+|+.+++.+++++..+++.+  +++++.+|+.+...
T Consensus       210 ~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~  289 (375)
T 4dcm_A          210 GARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  289 (375)
T ss_dssp             HHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred             HHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence            3445677887777789999999999999999984  6899999999999999999999887632  58999999988433


Q ss_pred             -CCcceeecccCcccc
Q 047897           94 -PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 -~~~D~Vi~n~p~~~~  108 (232)
                       .+||+|++|+||+..
T Consensus       290 ~~~fD~Ii~nppfh~~  305 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQ  305 (375)
T ss_dssp             TTCEEEEEECCCC---
T ss_pred             CCCeeEEEECCCcccC
Confidence             389999999999754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.45  E-value=6e-13  Score=110.09  Aligned_cols=92  Identities=18%  Similarity=0.299  Sum_probs=80.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ..+.+.+.+++.+.+.++++|||||||+|.++..+++.+   .+|+|+|+|+++++.+++++...++ ++++++.+|+.+
T Consensus        59 ~~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~-~~v~~~~~d~~~  137 (317)
T 1dl5_A           59 SQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGYY  137 (317)
T ss_dssp             CCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGG
T ss_pred             cCHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCeEEEECChhh
Confidence            357899999999999999999999999999999999843   4599999999999999999998887 469999999988


Q ss_pred             CCC--CCcceeecccCcc
Q 047897           91 TEF--PQFDLVVANIPYG  106 (232)
Q Consensus        91 ~~~--~~~D~Vi~n~p~~  106 (232)
                      ...  .+||+|+++.+.+
T Consensus       138 ~~~~~~~fD~Iv~~~~~~  155 (317)
T 1dl5_A          138 GVPEFSPYDVIFVTVGVD  155 (317)
T ss_dssp             CCGGGCCEEEEEECSBBS
T ss_pred             ccccCCCeEEEEEcCCHH
Confidence            543  4799999987654

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.44  E-value=8.2e-13  Score=102.90  Aligned_cols=93  Identities=22%  Similarity=0.274  Sum_probs=79.8

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +..+.+...+++.+.+.++.+|||+|||+|.++..+++..   .+|+++|+++.+++.+++++...+. ++++++.+|+.
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~  138 (215)
T 2yxe_A           60 ISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGY-DNVIVIVGDGT  138 (215)
T ss_dssp             ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEESCGG
T ss_pred             eCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcc
Confidence            3558899999999988899999999999999999999843   7999999999999999999988776 46999999986


Q ss_pred             CCC--CCCcceeecccCcc
Q 047897           90 KTE--FPQFDLVVANIPYG  106 (232)
Q Consensus        90 ~~~--~~~~D~Vi~n~p~~  106 (232)
                      ...  ..+||+|+++.+++
T Consensus       139 ~~~~~~~~fD~v~~~~~~~  157 (215)
T 2yxe_A          139 LGYEPLAPYDRIYTTAAGP  157 (215)
T ss_dssp             GCCGGGCCEEEEEESSBBS
T ss_pred             cCCCCCCCeeEEEECCchH
Confidence            543  24799999886644

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.44  E-value=1.9e-13  Score=113.71  Aligned_cols=95  Identities=14%  Similarity=0.149  Sum_probs=76.1

Q ss_pred             ccCCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~   89 (232)
                      |+..+...+.+.+.+. ..++.+|||+|||+|.++..++..+.+|+++|+|+.+++.|++++..+++.+ +++++++|+.
T Consensus       134 f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~  213 (332)
T 2igt_A          134 FPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAM  213 (332)
T ss_dssp             CGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHH
T ss_pred             chHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHH
Confidence            3333344444555443 3467899999999999999999977799999999999999999999888754 5999999998


Q ss_pred             CCC------CCCcceeecccCcc
Q 047897           90 KTE------FPQFDLVVANIPYG  106 (232)
Q Consensus        90 ~~~------~~~~D~Vi~n~p~~  106 (232)
                      ++.      ...||+|++|+|+.
T Consensus       214 ~~l~~~~~~~~~fD~Ii~dPP~~  236 (332)
T 2igt_A          214 KFIQREERRGSTYDIILTDPPKF  236 (332)
T ss_dssp             HHHHHHHHHTCCBSEEEECCCSE
T ss_pred             HHHHHHHhcCCCceEEEECCccc
Confidence            753      24799999999963

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.44  E-value=2e-13  Score=111.85  Aligned_cols=94  Identities=13%  Similarity=0.267  Sum_probs=81.8

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +.+.+.+++.+++.+.+.++.+|||+|||+|..+..+++.  +.+|+|+|+|+.+++.|++++...+  ++++++++|+.
T Consensus         8 ~~h~pvLl~e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~   85 (301)
T 1m6y_A            8 QRHIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYR   85 (301)
T ss_dssp             SSCCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGG
T ss_pred             ccccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHH
Confidence            3455778899999999889999999999999999999984  5899999999999999999998876  58999999998


Q ss_pred             CCCC-------CCcceeecccCccc
Q 047897           90 KTEF-------PQFDLVVANIPYGI  107 (232)
Q Consensus        90 ~~~~-------~~~D~Vi~n~p~~~  107 (232)
                      +++.       ..||.|++|+|+..
T Consensus        86 ~l~~~l~~~g~~~~D~Vl~D~gvSs  110 (301)
T 1m6y_A           86 EADFLLKTLGIEKVDGILMDLGVST  110 (301)
T ss_dssp             GHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             HHHHHHHhcCCCCCCEEEEcCccch
Confidence            7641       47999999998643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.43  E-value=9.4e-13  Score=107.08  Aligned_cols=87  Identities=17%  Similarity=0.216  Sum_probs=76.6

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ..++.+++.+++.++.+|||||||+|.++..+++ .+.+|+|+|+|+.+++.+++++...+..++++++.+|+.+++ ++
T Consensus        51 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~  129 (287)
T 1kpg_A           51 AKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-EP  129 (287)
T ss_dssp             HHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-CC
T ss_pred             HHHHHHHHHcCCCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC
Confidence            3566777888888899999999999999999995 677999999999999999999988877678999999998887 78


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      ||+|+++-.
T Consensus       130 fD~v~~~~~  138 (287)
T 1kpg_A          130 VDRIVSIGA  138 (287)
T ss_dssp             CSEEEEESC
T ss_pred             eeEEEEeCc
Confidence            999998643

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.43  E-value=7.9e-13  Score=111.88  Aligned_cols=88  Identities=24%  Similarity=0.386  Sum_probs=74.9

Q ss_pred             HHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           18 VLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        18 ~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +++.+.+.+.  ..++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++...++.  ++++.+|+.+...+ 
T Consensus       219 ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~--v~~~~~D~~~~~~~~  296 (381)
T 3dmg_A          219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALK--AQALHSDVDEALTEE  296 (381)
T ss_dssp             HHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTSCTT
T ss_pred             HHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCC--eEEEEcchhhccccC
Confidence            4445544442  346789999999999999999998889999999999999999999988753  89999999987654 


Q ss_pred             -CcceeecccCccc
Q 047897           95 -QFDLVVANIPYGI  107 (232)
Q Consensus        95 -~~D~Vi~n~p~~~  107 (232)
                       +||+|++|+||+.
T Consensus       297 ~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          297 ARFDIIVTNPPFHV  310 (381)
T ss_dssp             CCEEEEEECCCCCT
T ss_pred             CCeEEEEECCchhh
Confidence             8999999999986

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.43  E-value=1e-12  Score=112.64  Aligned_cols=94  Identities=19%  Similarity=0.256  Sum_probs=77.1

Q ss_pred             CCHHHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           14 TNQRVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        14 ~~~~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      .++...+.+.+.+. +.++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.|++++..+++.  ++++.+|+.+..
T Consensus       273 ~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~  350 (425)
T 2jjq_A          273 TNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS  350 (425)
T ss_dssp             SBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC
T ss_pred             cCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC
Confidence            44555444433221 457889999999999999999998889999999999999999999988873  999999999876


Q ss_pred             CCCcceeecccCcccch
Q 047897           93 FPQFDLVVANIPYGISS  109 (232)
Q Consensus        93 ~~~~D~Vi~n~p~~~~~  109 (232)
                      ...||+|++|+|+....
T Consensus       351 ~~~fD~Vv~dPPr~g~~  367 (425)
T 2jjq_A          351 VKGFDTVIVDPPRAGLH  367 (425)
T ss_dssp             CTTCSEEEECCCTTCSC
T ss_pred             ccCCCEEEEcCCccchH
Confidence            55899999999975443

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.43  E-value=4e-13  Score=112.04  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGIS  108 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~  108 (232)
                      .++.+|||+|||+|.++.. ++.+.+|+|+|+|+.+++.+++++..+++.++++++++|+.+.. ..||+|++|+|+...
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-~~fD~Vi~dpP~~~~  271 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-VKGNRVIMNLPKFAH  271 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-CCEEEEEECCTTTGG
T ss_pred             CCCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-CCCcEEEECCcHhHH
Confidence            4788999999999999999 88778999999999999999999999988668999999999887 789999999997643

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.43  E-value=2.6e-13  Score=106.40  Aligned_cols=97  Identities=12%  Similarity=0.144  Sum_probs=76.9

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      +...+...+.+...+...++.+|||||||+|..+..+++   .+.+|+++|+++.+++.|++++...++.++++++++|+
T Consensus        40 ~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~  119 (221)
T 3u81_A           40 MNVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGAS  119 (221)
T ss_dssp             GGCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCH
Confidence            345556555555555555678999999999999999998   26899999999999999999999988866899999998


Q ss_pred             CCC----CC----CCcceeecccCcccc
Q 047897           89 LKT----EF----PQFDLVVANIPYGIS  108 (232)
Q Consensus        89 ~~~----~~----~~~D~Vi~n~p~~~~  108 (232)
                      .+.    +.    .+||+|+++.+.+..
T Consensus       120 ~~~l~~~~~~~~~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          120 QDLIPQLKKKYDVDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             HHHGGGTTTTSCCCCCSEEEECSCGGGH
T ss_pred             HHHHHHHHHhcCCCceEEEEEcCCcccc
Confidence            552    11    479999998654443

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.42  E-value=1.3e-12  Score=106.72  Aligned_cols=89  Identities=13%  Similarity=0.201  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhc----CCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           16 QRVLDSIVRKS----SINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        16 ~~~~~~i~~~~----~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ...++.+++.+    .+.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....++.++++++.+|+.+
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  143 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE  143 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence            44667777877    7788999999999999999999985 789999999999999999999888876789999999999


Q ss_pred             CCCC--CcceeecccC
Q 047897           91 TEFP--QFDLVVANIP  104 (232)
Q Consensus        91 ~~~~--~~D~Vi~n~p  104 (232)
                      ++++  +||+|+++-.
T Consensus       144 ~~~~~~~fD~v~~~~~  159 (297)
T 2o57_A          144 IPCEDNSYDFIWSQDA  159 (297)
T ss_dssp             CSSCTTCEEEEEEESC
T ss_pred             CCCCCCCEeEEEecch
Confidence            8764  7999998643

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.42  E-value=1.2e-12  Score=108.18  Aligned_cols=87  Identities=17%  Similarity=0.161  Sum_probs=77.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ..++.+++.+++.++.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....++.++++++.+|+.+++ .+
T Consensus        77 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~  155 (318)
T 2fk8_A           77 AKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-EP  155 (318)
T ss_dssp             HHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-CC
T ss_pred             HHHHHHHHhcCCCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC-CC
Confidence            45677788888888999999999999999999985 88999999999999999999998887668999999998886 68


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      ||+|+++..
T Consensus       156 fD~v~~~~~  164 (318)
T 2fk8_A          156 VDRIVSIEA  164 (318)
T ss_dssp             CSEEEEESC
T ss_pred             cCEEEEeCh
Confidence            999998754

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.42  E-value=3.2e-13  Score=108.42  Aligned_cols=84  Identities=21%  Similarity=0.296  Sum_probs=70.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +.+.+.+.+...  .+.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|+++       ++++++++|+++++++ 
T Consensus        27 ~~l~~~l~~~~~--~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~-------~~v~~~~~~~e~~~~~~   97 (257)
T 4hg2_A           27 RALFRWLGEVAP--ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRH-------PRVTYAVAPAEDTGLPP   97 (257)
T ss_dssp             HHHHHHHHHHSS--CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCC-------TTEEEEECCTTCCCCCS
T ss_pred             HHHHHHHHHhcC--CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhc-------CCceeehhhhhhhcccC
Confidence            567777777664  456899999999999999999999999999999999877542       5799999999998765 


Q ss_pred             -CcceeecccCcccc
Q 047897           95 -QFDLVVANIPYGIS  108 (232)
Q Consensus        95 -~~D~Vi~n~p~~~~  108 (232)
                       +||+|++...+|+.
T Consensus        98 ~sfD~v~~~~~~h~~  112 (257)
T 4hg2_A           98 ASVDVAIAAQAMHWF  112 (257)
T ss_dssp             SCEEEEEECSCCTTC
T ss_pred             CcccEEEEeeehhHh
Confidence             79999998766655

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.42  E-value=3e-13  Score=108.71  Aligned_cols=94  Identities=19%  Similarity=0.253  Sum_probs=78.1

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI   84 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   84 (232)
                      ...|.+....++.+.+.+++.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++.       +++++
T Consensus         9 a~~y~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~-------~~~~~   81 (261)
T 3ege_A            9 GKQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHP-------QVEWF   81 (261)
T ss_dssp             ----CCSBCCCHHHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCT-------TEEEE
T ss_pred             HHHHhhcccccHHHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhcc-------CCEEE
Confidence            34455556667889999999998888999999999999999999998899999999999998776553       69999


Q ss_pred             EcCCCCCCCC--CcceeecccCc
Q 047897           85 SKDALKTEFP--QFDLVVANIPY  105 (232)
Q Consensus        85 ~~D~~~~~~~--~~D~Vi~n~p~  105 (232)
                      .+|+.+++++  +||+|+++..+
T Consensus        82 ~~d~~~~~~~~~~fD~v~~~~~l  104 (261)
T 3ege_A           82 TGYAENLALPDKSVDGVISILAI  104 (261)
T ss_dssp             CCCTTSCCSCTTCBSEEEEESCG
T ss_pred             ECchhhCCCCCCCEeEEEEcchH
Confidence            9999988764  79999987653

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.42  E-value=4.9e-13  Score=104.22  Aligned_cols=87  Identities=23%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQ   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~   95 (232)
                      .....+...+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....   ++++++++|+.+.+. .+
T Consensus        38 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~  114 (216)
T 3ofk_A           38 RHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFSTAEL  114 (216)
T ss_dssp             HHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCCCSCC
T ss_pred             HHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCCCCCC
Confidence            44444555666677889999999999999999998889999999999999999998764   479999999999874 38


Q ss_pred             cceeecccCcc
Q 047897           96 FDLVVANIPYG  106 (232)
Q Consensus        96 ~D~Vi~n~p~~  106 (232)
                      ||+|+++..++
T Consensus       115 fD~v~~~~~l~  125 (216)
T 3ofk_A          115 FDLIVVAEVLY  125 (216)
T ss_dssp             EEEEEEESCGG
T ss_pred             ccEEEEccHHH
Confidence            99999976544

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.42  E-value=1.3e-13  Score=110.19  Aligned_cols=92  Identities=21%  Similarity=0.295  Sum_probs=72.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc----CCeEEEEEcCHHHHHHHHHHHhhc---CCCcc---------
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV----SKKVHAIEIDERMVEILNRRAADS---GFHDR---------   80 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~---------   80 (232)
                      .+++.+++.+...++.+|||+|||+|.++..++..    +.+|+|+|+|+.+++.|++++...   ++..+         
T Consensus        38 ~l~~~~l~~~~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~  117 (250)
T 1o9g_A           38 EIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSE  117 (250)
T ss_dssp             HHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhh
Confidence            45555555554446779999999999999999875    578999999999999999988765   33222         


Q ss_pred             ----------------EE-------------EEEcCCCCCC------CC-CcceeecccCcccc
Q 047897           81 ----------------LN-------------VISKDALKTE------FP-QFDLVVANIPYGIS  108 (232)
Q Consensus        81 ----------------~~-------------~~~~D~~~~~------~~-~~D~Vi~n~p~~~~  108 (232)
                                      ++             ++++|+.+..      .. +||+|++|+||...
T Consensus       118 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~  181 (250)
T 1o9g_A          118 RFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER  181 (250)
T ss_dssp             HHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             hcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecc
Confidence                            66             9999998854      33 79999999998644

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.42  E-value=7.2e-13  Score=104.08  Aligned_cols=76  Identities=14%  Similarity=0.222  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceee-ccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVV-ANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi-~n~  103 (232)
                      .++++|+|||||+|.++..++..  ..+|+|+|+++.+++.|++|+..+|+.++++++.+|.++...+  +||+|+ +++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            47789999999999999999984  4589999999999999999999999877899999999987654  699755 554


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      -
T Consensus       100 G  100 (230)
T 3lec_A          100 G  100 (230)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.42  E-value=1.6e-12  Score=99.73  Aligned_cols=85  Identities=18%  Similarity=0.275  Sum_probs=73.1

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCccee
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFDLV   99 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D~V   99 (232)
                      .+++.++..++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++...+. ++++++.+|+.+.+. .+||+|
T Consensus        23 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~D~v  101 (199)
T 2xvm_A           23 EVLEAVKVVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTFDRQYDFI  101 (199)
T ss_dssp             HHHHHTTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCCCCCEEEE
T ss_pred             HHHHHhhccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCCCCCceEE
Confidence            455666666788999999999999999999888999999999999999999988776 479999999998765 479999


Q ss_pred             ecccCcc
Q 047897          100 VANIPYG  106 (232)
Q Consensus       100 i~n~p~~  106 (232)
                      +++.+++
T Consensus       102 ~~~~~l~  108 (199)
T 2xvm_A          102 LSTVVLM  108 (199)
T ss_dssp             EEESCGG
T ss_pred             EEcchhh
Confidence            9876544

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.41  E-value=8e-13  Score=105.86  Aligned_cols=90  Identities=10%  Similarity=-0.045  Sum_probs=70.7

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh----------c------CCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD----------S------GFH   78 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~----------~------~~~   78 (232)
                      ++.+.+.+.....+.++.+|||+|||+|..+..|++.+.+|+|+|+|+.+++.|+++...          .      ...
T Consensus        53 ~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (252)
T 2gb4_A           53 HQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSS  132 (252)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETT
T ss_pred             CHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCC
Confidence            345555554444445788999999999999999999999999999999999999887641          0      011


Q ss_pred             ccEEEEEcCCCCCCC---CCcceeecccC
Q 047897           79 DRLNVISKDALKTEF---PQFDLVVANIP  104 (232)
Q Consensus        79 ~~~~~~~~D~~~~~~---~~~D~Vi~n~p  104 (232)
                      .+++++++|+.+++.   ++||+|+++..
T Consensus       133 ~~i~~~~~D~~~l~~~~~~~FD~V~~~~~  161 (252)
T 2gb4_A          133 GSISLYCCSIFDLPRANIGKFDRIWDRGA  161 (252)
T ss_dssp             SSEEEEESCTTTGGGGCCCCEEEEEESSS
T ss_pred             CceEEEECccccCCcccCCCEEEEEEhhh
Confidence            579999999999865   47999997644

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.41  E-value=1.3e-12  Score=110.37  Aligned_cols=102  Identities=16%  Similarity=0.324  Sum_probs=82.4

Q ss_pred             cCCCcccccCCHHHHHHHHHh--cCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCcc
Q 047897            5 HKSKGQHILTNQRVLDSIVRK--SSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDR   80 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~--~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~   80 (232)
                      ...+.|.+.+.+.....++..  ....++.+|||+| |+|.++..++..+  .+|+|+|+|+.+++.|++++...|+. +
T Consensus       145 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~  222 (373)
T 2qm3_A          145 LHEFDQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-D  222 (373)
T ss_dssp             CGGGTCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-C
T ss_pred             chhcCCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-C
Confidence            345667676666666666533  2233578999999 9999999998843  69999999999999999999988874 8


Q ss_pred             EEEEEcCCCC-CCC---CCcceeecccCcccc
Q 047897           81 LNVISKDALK-TEF---PQFDLVVANIPYGIS  108 (232)
Q Consensus        81 ~~~~~~D~~~-~~~---~~~D~Vi~n~p~~~~  108 (232)
                      ++++.+|+.+ ++.   .+||+|++|+||+..
T Consensus       223 v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~  254 (373)
T 2qm3_A          223 IEIFTFDLRKPLPDYALHKFDTFITDPPETLE  254 (373)
T ss_dssp             EEEECCCTTSCCCTTTSSCBSEEEECCCSSHH
T ss_pred             EEEEEChhhhhchhhccCCccEEEECCCCchH
Confidence            9999999998 553   379999999999764

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.41  E-value=1.1e-12  Score=102.29  Aligned_cols=91  Identities=21%  Similarity=0.295  Sum_probs=75.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCc----cEEEEEcCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD----RLNVISKDAL   89 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~D~~   89 (232)
                      +...+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...++..    +++++.+|+.
T Consensus        15 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~   94 (217)
T 3jwh_A           15 QQRMNGVVAALKQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALT   94 (217)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTT
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcc
Confidence            4566677777766678899999999999999999854  699999999999999999998776643    7999999997


Q ss_pred             CCCC--CCcceeecccCcc
Q 047897           90 KTEF--PQFDLVVANIPYG  106 (232)
Q Consensus        90 ~~~~--~~~D~Vi~n~p~~  106 (232)
                      ..+.  .+||+|+++-.++
T Consensus        95 ~~~~~~~~fD~v~~~~~l~  113 (217)
T 3jwh_A           95 YQDKRFHGYDAATVIEVIE  113 (217)
T ss_dssp             SCCGGGCSCSEEEEESCGG
T ss_pred             cccccCCCcCEEeeHHHHH
Confidence            6665  3899999875543

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.41  E-value=4.5e-13  Score=112.79  Aligned_cols=74  Identities=27%  Similarity=0.429  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeeccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~  103 (232)
                      .+|.+|||||||+|.++..+++.+ .+|+|||.++ +++.|+++++.+|+.++++++++|+.++..+ ++|+|++.+
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~  157 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEW  157 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeec
Confidence            468899999999999999888865 6899999986 8999999999999988999999999998776 899999864

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.41  E-value=1.4e-12  Score=106.05  Aligned_cols=93  Identities=17%  Similarity=0.223  Sum_probs=78.7

Q ss_pred             ccCCHHHHHHHHHhc-CCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           12 ILTNQRVLDSIVRKS-SINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        12 fl~~~~~~~~i~~~~-~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      ++.++..++.+++.+ .+.++.+|||||||+|.++..+++.   +.+|+|+|+|+.+++.+++++...+  .+++++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d   80 (284)
T 3gu3_A            3 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGD   80 (284)
T ss_dssp             TTCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESC
T ss_pred             cccchHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcc
Confidence            344678888888766 5667889999999999999999984   5899999999999999999998765  379999999


Q ss_pred             CCCCCCC-CcceeecccCcc
Q 047897           88 ALKTEFP-QFDLVVANIPYG  106 (232)
Q Consensus        88 ~~~~~~~-~~D~Vi~n~p~~  106 (232)
                      +.+++.+ +||+|+++...+
T Consensus        81 ~~~~~~~~~fD~v~~~~~l~  100 (284)
T 3gu3_A           81 ATEIELNDKYDIAICHAFLL  100 (284)
T ss_dssp             TTTCCCSSCEEEEEEESCGG
T ss_pred             hhhcCcCCCeeEEEECChhh
Confidence            9998765 799999976543

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.40  E-value=7.6e-13  Score=103.71  Aligned_cols=92  Identities=21%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.+++++...++.++++++.+|+.+.
T Consensus        43 ~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  122 (223)
T 3duw_A           43 SPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDS  122 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            4555444444444557789999999999999999984   6899999999999999999999888866799999999764


Q ss_pred             CC-------CCcceeecccCcc
Q 047897           92 EF-------PQFDLVVANIPYG  106 (232)
Q Consensus        92 ~~-------~~~D~Vi~n~p~~  106 (232)
                      ..       ..||+|+++.+..
T Consensus       123 ~~~~~~~~~~~fD~v~~d~~~~  144 (223)
T 3duw_A          123 LQQIENEKYEPFDFIFIDADKQ  144 (223)
T ss_dssp             HHHHHHTTCCCCSEEEECSCGG
T ss_pred             HHHHHhcCCCCcCEEEEcCCcH
Confidence            11       4699999887643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.40  E-value=2.9e-13  Score=108.65  Aligned_cols=89  Identities=25%  Similarity=0.263  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC-CCC-C
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL-KTE-F   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~-~~~-~   93 (232)
                      +..++.+++.+.+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.+++++....  -...+...+.. ... .
T Consensus        31 ~~~~~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~--v~~~~~~~~~~~~~~~~  108 (261)
T 3iv6_A           31 PSDRENDIFLENIVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRC--VTIDLLDITAEIPKELA  108 (261)
T ss_dssp             CCHHHHHHHTTTCCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSC--CEEEECCTTSCCCGGGT
T ss_pred             HHHHHHHHHhcCCCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcc--ceeeeeecccccccccC
Confidence            5788899999998999999999999999999999999999999999999999999986531  12333322220 011 2


Q ss_pred             CCcceeecccCcc
Q 047897           94 PQFDLVVANIPYG  106 (232)
Q Consensus        94 ~~~D~Vi~n~p~~  106 (232)
                      ++||+|+++..++
T Consensus       109 ~~fD~Vv~~~~l~  121 (261)
T 3iv6_A          109 GHFDFVLNDRLIN  121 (261)
T ss_dssp             TCCSEEEEESCGG
T ss_pred             CCccEEEEhhhhH
Confidence            3799999986543

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.40  E-value=1.3e-12  Score=102.06  Aligned_cols=91  Identities=18%  Similarity=0.276  Sum_probs=75.2

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCc----cEEEEEcCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHD----RLNVISKDA   88 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~----~~~~~~~D~   88 (232)
                      ++...+.+.+.+...++.+|||+|||+|.++..+++.+  .+|+|+|+|+.+++.+++++...++.+    +++++.+|+
T Consensus        14 ~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~   93 (219)
T 3jwg_A           14 NQQRLGTVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSL   93 (219)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCS
T ss_pred             hHHHHHHHHHHHhhcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcc
Confidence            35666777777665678899999999999999999854  799999999999999999997766543    799999999


Q ss_pred             CCCCC--CCcceeecccCc
Q 047897           89 LKTEF--PQFDLVVANIPY  105 (232)
Q Consensus        89 ~~~~~--~~~D~Vi~n~p~  105 (232)
                      ...+.  .+||+|+++-.+
T Consensus        94 ~~~~~~~~~fD~V~~~~~l  112 (219)
T 3jwg_A           94 VYRDKRFSGYDAATVIEVI  112 (219)
T ss_dssp             SSCCGGGTTCSEEEEESCG
T ss_pred             cccccccCCCCEEEEHHHH
Confidence            77665  389999986543

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.40  E-value=1.1e-12  Score=102.38  Aligned_cols=87  Identities=22%  Similarity=0.410  Sum_probs=75.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      .+.+++.+.+.++.+|||+|||+|.++..+++..   .+|+|+|+++.+++.+++++...++ ++++++.+|+.+.+.+ 
T Consensus        26 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~  104 (219)
T 3dh0_A           26 PEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGL-KNVEVLKSEENKIPLPD  104 (219)
T ss_dssp             HHHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECBTTBCSSCS
T ss_pred             HHHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEecccccCCCCC
Confidence            4567777788889999999999999999999843   7999999999999999999988877 4799999999987654 


Q ss_pred             -CcceeecccCcc
Q 047897           95 -QFDLVVANIPYG  106 (232)
Q Consensus        95 -~~D~Vi~n~p~~  106 (232)
                       +||+|+++..++
T Consensus       105 ~~fD~v~~~~~l~  117 (219)
T 3dh0_A          105 NTVDFIFMAFTFH  117 (219)
T ss_dssp             SCEEEEEEESCGG
T ss_pred             CCeeEEEeehhhh
Confidence             799999875543

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.40  E-value=1.5e-12  Score=118.22  Aligned_cols=95  Identities=22%  Similarity=0.350  Sum_probs=82.7

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc------------------------------------------
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV------------------------------------------   51 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~------------------------------------------   51 (232)
                      ..+.+++.|+...++.++..|||++||+|.++..++..                                          
T Consensus       174 l~e~LAa~ll~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~  253 (703)
T 3v97_A          174 IKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLA  253 (703)
T ss_dssp             SCHHHHHHHHHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccc
Confidence            34889999999999888999999999999999887752                                          


Q ss_pred             --CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC----CcceeecccCcccc
Q 047897           52 --SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP----QFDLVVANIPYGIS  108 (232)
Q Consensus        52 --~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~----~~D~Vi~n~p~~~~  108 (232)
                        ..+++|+|+|+.+++.|++|+...|+.+.+++.++|+.++..+    ++|+|++||||+..
T Consensus       254 ~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R  316 (703)
T 3v97_A          254 EYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER  316 (703)
T ss_dssp             HCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC-
T ss_pred             cCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc
Confidence              1479999999999999999999999977799999999987432    79999999999753

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.40  E-value=3.6e-12  Score=101.58  Aligned_cols=83  Identities=25%  Similarity=0.462  Sum_probs=70.6

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF   96 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~   96 (232)
                      .++.++......++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++....+.  +++++++|+.+.+.+ +|
T Consensus        29 ~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~f  106 (252)
T 1wzn_A           29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEF  106 (252)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChhhcccCCCc
Confidence            445555555556778999999999999999999888999999999999999999987664  699999999987765 79


Q ss_pred             ceeecc
Q 047897           97 DLVVAN  102 (232)
Q Consensus        97 D~Vi~n  102 (232)
                      |+|++.
T Consensus       107 D~v~~~  112 (252)
T 1wzn_A          107 DAVTMF  112 (252)
T ss_dssp             EEEEEC
T ss_pred             cEEEEc
Confidence            999863

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.40  E-value=1.7e-12  Score=102.65  Aligned_cols=92  Identities=21%  Similarity=0.339  Sum_probs=78.0

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-C
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-T   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~   91 (232)
                      ..+.+...+++.+.+.++.+|||+|||+|.++..+++.. .+|+++|+++.+++.+++++...++ .+++++.+|+.. +
T Consensus        75 ~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~  153 (235)
T 1jg1_A           75 SAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKGF  153 (235)
T ss_dssp             CCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGCC
T ss_pred             ccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEECCcccCC
Confidence            458899999999988899999999999999999999854 8999999999999999999988887 469999999732 2


Q ss_pred             CCC-CcceeecccCcc
Q 047897           92 EFP-QFDLVVANIPYG  106 (232)
Q Consensus        92 ~~~-~~D~Vi~n~p~~  106 (232)
                      +.. .||+|+++.+.+
T Consensus       154 ~~~~~fD~Ii~~~~~~  169 (235)
T 1jg1_A          154 PPKAPYDVIIVTAGAP  169 (235)
T ss_dssp             GGGCCEEEEEECSBBS
T ss_pred             CCCCCccEEEECCcHH
Confidence            222 499999876543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.40  E-value=5.5e-12  Score=100.21  Aligned_cols=91  Identities=21%  Similarity=0.235  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-C-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-F-   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~-   93 (232)
                      +..+..++..+++.++++|||+|||+|.++..+++.+.+|+++|+++.+++.++++....++.++++++.+|+.+.. . 
T Consensus        77 ~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  156 (248)
T 2yvl_A           77 PKDSFYIALKLNLNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPE  156 (248)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCT
T ss_pred             chhHHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCC
Confidence            56667888888888999999999999999999998888999999999999999999988887668999999998864 2 


Q ss_pred             CCcceeecccCcc
Q 047897           94 PQFDLVVANIPYG  106 (232)
Q Consensus        94 ~~~D~Vi~n~p~~  106 (232)
                      ..||+|++++|..
T Consensus       157 ~~~D~v~~~~~~~  169 (248)
T 2yvl_A          157 GIFHAAFVDVREP  169 (248)
T ss_dssp             TCBSEEEECSSCG
T ss_pred             CcccEEEECCcCH
Confidence            3799999998743

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.39  E-value=2.3e-12  Score=101.25  Aligned_cols=94  Identities=15%  Similarity=0.244  Sum_probs=78.2

Q ss_pred             cCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHhcC-------CeEEEEEcCHHHHHHHHHHHhhcCC----Cc
Q 047897           13 LTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLEVS-------KKVHAIEIDERMVEILNRRAADSGF----HD   79 (232)
Q Consensus        13 l~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~~~-------~~v~~vD~~~~~~~~a~~~~~~~~~----~~   79 (232)
                      ...+.+...+++.+  .+.++.+|||||||+|.++..+++..       .+|+++|+++.+++.+++++...++    ..
T Consensus        61 ~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~  140 (227)
T 2pbf_A           61 ISAPHMHALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKID  140 (227)
T ss_dssp             ECCHHHHHHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSST
T ss_pred             cCChHHHHHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccC
Confidence            44588888888887  47788999999999999999999854       4999999999999999999987762    25


Q ss_pred             cEEEEEcCCCCCC----C--CCcceeecccCcc
Q 047897           80 RLNVISKDALKTE----F--PQFDLVVANIPYG  106 (232)
Q Consensus        80 ~~~~~~~D~~~~~----~--~~~D~Vi~n~p~~  106 (232)
                      +++++.+|+.+..    .  .+||+|+++.+.+
T Consensus       141 ~v~~~~~d~~~~~~~~~~~~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          141 NFKIIHKNIYQVNEEEKKELGLFDAIHVGASAS  173 (227)
T ss_dssp             TEEEEECCGGGCCHHHHHHHCCEEEEEECSBBS
T ss_pred             CEEEEECChHhcccccCccCCCcCEEEECCchH
Confidence            7999999998854    2  4799999876543

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.39  E-value=1.5e-12  Score=113.40  Aligned_cols=89  Identities=22%  Similarity=0.377  Sum_probs=75.2

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~   96 (232)
                      .+.+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++ +++.|++++...++.++++++++|+.+++.+ +|
T Consensus       147 ~~~il~~l~~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~f  225 (480)
T 3b3j_A          147 QRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV  225 (480)
T ss_dssp             HHHHHHTGGGTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred             HHHHHHhhhhcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCe
Confidence            445666666567889999999999999999885 46999999998 9999999999888877899999999987654 79


Q ss_pred             ceeecccC-cccc
Q 047897           97 DLVVANIP-YGIS  108 (232)
Q Consensus        97 D~Vi~n~p-~~~~  108 (232)
                      |+|+++.+ |+..
T Consensus       226 D~Ivs~~~~~~~~  238 (480)
T 3b3j_A          226 DIIISEPMGYMLF  238 (480)
T ss_dssp             EEEECCCCHHHHT
T ss_pred             EEEEEeCchHhcC
Confidence            99999988 4443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.39  E-value=2e-12  Score=107.97  Aligned_cols=89  Identities=22%  Similarity=0.335  Sum_probs=74.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      ..+.+.+.+...++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++...++.++++++++|+.+++.+  
T Consensus        52 ~~~~i~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~  130 (340)
T 2fyt_A           52 YRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVE  130 (340)
T ss_dssp             HHHHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCS
T ss_pred             HHHHHHhhhhhcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCC
Confidence            33555566666788899999999999999999865 5999999997 9999999999888867899999999987654  


Q ss_pred             Ccceeeccc-Cccc
Q 047897           95 QFDLVVANI-PYGI  107 (232)
Q Consensus        95 ~~D~Vi~n~-p~~~  107 (232)
                      +||+|+++. +|..
T Consensus       131 ~~D~Ivs~~~~~~l  144 (340)
T 2fyt_A          131 KVDVIISEWMGYFL  144 (340)
T ss_dssp             CEEEEEECCCBTTB
T ss_pred             cEEEEEEcCchhhc
Confidence            799999986 4443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.39  E-value=1.6e-12  Score=102.16  Aligned_cols=87  Identities=15%  Similarity=0.289  Sum_probs=71.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC-
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE-   92 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~-   92 (232)
                      ++..++...+..++.+|||||||+|..+..+++.   +.+|+++|+|+.+++.|++++...|+. ++++++.+|+.+.. 
T Consensus        44 ~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~  123 (221)
T 3dr5_A           44 LLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMS  123 (221)
T ss_dssp             HHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGG
T ss_pred             HHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHH
Confidence            3344444444444569999999999999999882   689999999999999999999999886 68999999997642 


Q ss_pred             ---CCCcceeecccC
Q 047897           93 ---FPQFDLVVANIP  104 (232)
Q Consensus        93 ---~~~~D~Vi~n~p  104 (232)
                         .++||+|+++.+
T Consensus       124 ~~~~~~fD~V~~d~~  138 (221)
T 3dr5_A          124 RLANDSYQLVFGQVS  138 (221)
T ss_dssp             GSCTTCEEEEEECCC
T ss_pred             HhcCCCcCeEEEcCc
Confidence               348999998764

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.39  E-value=1.4e-12  Score=103.28  Aligned_cols=75  Identities=16%  Similarity=0.239  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceee-ccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVV-ANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi-~n~  103 (232)
                      .++++|||||||+|.++..++..  ..+|+|+|+|+.+++.|++|+..+|+.++++++.+|.++...+  +||+|+ +++
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            47789999999999999999984  4589999999999999999999999877899999999987554  499766 443

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.39  E-value=2.5e-12  Score=107.75  Aligned_cols=88  Identities=22%  Similarity=0.328  Sum_probs=75.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-C
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-Q   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~   95 (232)
                      ..+.+++.+...++.+|||||||+|.++..+++.+ .+|+|+|+++ +++.|++++...++.++++++.+|+.+.+.+ +
T Consensus        38 y~~~i~~~l~~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~  116 (348)
T 2y1w_A           38 YQRAILQNHTDFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ  116 (348)
T ss_dssp             HHHHHHHTGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred             HHHHHHhccccCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCc
Confidence            45667777776788999999999999999999854 5999999996 8899999999888867899999999987654 7


Q ss_pred             cceeecccCcc
Q 047897           96 FDLVVANIPYG  106 (232)
Q Consensus        96 ~D~Vi~n~p~~  106 (232)
                      ||+|+++.+.+
T Consensus       117 ~D~Ivs~~~~~  127 (348)
T 2y1w_A          117 VDIIISEPMGY  127 (348)
T ss_dssp             EEEEEECCCBT
T ss_pred             eeEEEEeCchh
Confidence            99999987643

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.39  E-value=1.1e-12  Score=105.25  Aligned_cols=87  Identities=26%  Similarity=0.472  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      ...++.+++.+.+.++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.++++....   ++++++.+|+.+.+.+
T Consensus        41 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~  117 (266)
T 3ujc_A           41 LEATKKILSDIELNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTKEFP  117 (266)
T ss_dssp             HHHHHHHTTTCCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTCCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccCCCC
Confidence            456778888888888999999999999999999985 889999999999999999988654   5799999999987653


Q ss_pred             --CcceeecccCc
Q 047897           95 --QFDLVVANIPY  105 (232)
Q Consensus        95 --~~D~Vi~n~p~  105 (232)
                        +||+|+++..+
T Consensus       118 ~~~fD~v~~~~~l  130 (266)
T 3ujc_A          118 ENNFDLIYSRDAI  130 (266)
T ss_dssp             TTCEEEEEEESCG
T ss_pred             CCcEEEEeHHHHH
Confidence              89999987543

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.38  E-value=2e-12  Score=109.45  Aligned_cols=85  Identities=19%  Similarity=0.354  Sum_probs=73.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-C
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-Q   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~   95 (232)
                      ..+.+.+.....++.+|||+|||+|.++..+++.+. +|+|+|++ .+++.|++++...++.++++++++|+.+++.+ +
T Consensus        51 ~~~~i~~~~~~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  129 (376)
T 3r0q_C           51 YFNAVFQNKHHFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEK  129 (376)
T ss_dssp             HHHHHHTTTTTTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSC
T ss_pred             HHHHHHhccccCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCc
Confidence            344455555667889999999999999999999665 99999999 99999999999988877899999999998764 8


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      ||+|+++.
T Consensus       130 ~D~Iv~~~  137 (376)
T 3r0q_C          130 VDVIISEW  137 (376)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEEcC
Confidence            99999976

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.38  E-value=3.3e-12  Score=102.11  Aligned_cols=90  Identities=20%  Similarity=0.235  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALKT   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~   91 (232)
                      +..+..+++.+++.++.+|||+|||+|.++..+++.   +.+|+++|+++.+++.+++++... |. ++++++++|+.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~  160 (258)
T 2pwy_A           82 PKDASAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQV-ENVRFHLGKLEEA  160 (258)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCC-CCEEEEESCGGGC
T ss_pred             chHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCC-CCEEEEECchhhc
Confidence            566678888888889999999999999999999985   689999999999999999999877 63 6899999999987


Q ss_pred             CCC--CcceeecccCcc
Q 047897           92 EFP--QFDLVVANIPYG  106 (232)
Q Consensus        92 ~~~--~~D~Vi~n~p~~  106 (232)
                      +.+  .||+|++++|..
T Consensus       161 ~~~~~~~D~v~~~~~~~  177 (258)
T 2pwy_A          161 ELEEAAYDGVALDLMEP  177 (258)
T ss_dssp             CCCTTCEEEEEEESSCG
T ss_pred             CCCCCCcCEEEECCcCH
Confidence            443  799999998754

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.38  E-value=2.5e-12  Score=100.30  Aligned_cols=77  Identities=16%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--C--CCcceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--F--PQFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~--~~~D~Vi~n  102 (232)
                      .++.+|||||||+|.++..+++.  ..+++|+|+++.+++.|++++...++ ++++++++|+.+++  +  .+||.|++|
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~  118 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLN  118 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEE
Confidence            35789999999999999999884  57999999999999999999998887 68999999998854  3  379999999


Q ss_pred             cCcc
Q 047897          103 IPYG  106 (232)
Q Consensus       103 ~p~~  106 (232)
                      .|..
T Consensus       119 ~~~~  122 (214)
T 1yzh_A          119 FSDP  122 (214)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8754

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.38  E-value=1.3e-12  Score=104.69  Aligned_cols=92  Identities=21%  Similarity=0.351  Sum_probs=74.8

Q ss_pred             CHHHHHHHHHhc-----CCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           15 NQRVLDSIVRKS-----SINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        15 ~~~~~~~i~~~~-----~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ++...+.+++.+     .+.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++ ..+ .++++++.+|+.
T Consensus        19 ~~~~~~~~~~~l~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-~~~-~~~~~~~~~d~~   96 (263)
T 2yqz_A           19 PPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKI-AGV-DRKVQVVQADAR   96 (263)
T ss_dssp             CHHHHHHHHHHHHHHCCCSSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHT-TTS-CTTEEEEESCTT
T ss_pred             ChHHHHHHHHHHHHhhcCCCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-hcc-CCceEEEEcccc
Confidence            455555555554     5667889999999999999999998899999999999999999998 222 268999999999


Q ss_pred             CCCCC--CcceeecccCcccc
Q 047897           90 KTEFP--QFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~~~~--~~D~Vi~n~p~~~~  108 (232)
                      +++++  +||+|+++..++..
T Consensus        97 ~~~~~~~~fD~v~~~~~l~~~  117 (263)
T 2yqz_A           97 AIPLPDESVHGVIVVHLWHLV  117 (263)
T ss_dssp             SCCSCTTCEEEEEEESCGGGC
T ss_pred             cCCCCCCCeeEEEECCchhhc
Confidence            88754  79999997665544

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.38  E-value=2e-12  Score=103.25  Aligned_cols=93  Identities=18%  Similarity=0.251  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+.
T Consensus        48 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  127 (248)
T 3tfw_A           48 AANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQS  127 (248)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence            3444444433334457789999999999999999984   6899999999999999999999988867899999999763


Q ss_pred             -C----CCCcceeecccCccc
Q 047897           92 -E----FPQFDLVVANIPYGI  107 (232)
Q Consensus        92 -~----~~~~D~Vi~n~p~~~  107 (232)
                       +    .++||+|+++.+...
T Consensus       128 l~~~~~~~~fD~V~~d~~~~~  148 (248)
T 3tfw_A          128 LESLGECPAFDLIFIDADKPN  148 (248)
T ss_dssp             HHTCCSCCCCSEEEECSCGGG
T ss_pred             HHhcCCCCCeEEEEECCchHH
Confidence             2    237999998875433

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.38  E-value=1.9e-12  Score=105.22  Aligned_cols=87  Identities=21%  Similarity=0.344  Sum_probs=72.6

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-C--CC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-F--PQ   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~--~~   95 (232)
                      +..+++.+... +.+|||||||+|.++..+++.+.+|+|+|+++.+++.+++++...++.++++++.+|+.+.+ .  .+
T Consensus        58 l~~~l~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~  136 (285)
T 4htf_A           58 LDRVLAEMGPQ-KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETP  136 (285)
T ss_dssp             HHHHHHHTCSS-CCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSC
T ss_pred             HHHHHHhcCCC-CCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCC
Confidence            33455555543 67999999999999999999889999999999999999999998887678999999999886 2  48


Q ss_pred             cceeecccCcc
Q 047897           96 FDLVVANIPYG  106 (232)
Q Consensus        96 ~D~Vi~n~p~~  106 (232)
                      ||+|+++-.++
T Consensus       137 fD~v~~~~~l~  147 (285)
T 4htf_A          137 VDLILFHAVLE  147 (285)
T ss_dssp             EEEEEEESCGG
T ss_pred             ceEEEECchhh
Confidence            99999875543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.38  E-value=2.6e-12  Score=100.60  Aligned_cols=83  Identities=22%  Similarity=0.312  Sum_probs=69.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--C
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--Q   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~   95 (232)
                      +.+.+.+.+  .++.+|||+|||+|.++..+++.+.+++|+|+|+.+++.++++....+  .+++++.+|+.+.+.+  +
T Consensus        28 ~~~~l~~~~--~~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~  103 (227)
T 1ve3_A           28 LEPLLMKYM--KKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKT  103 (227)
T ss_dssp             HHHHHHHSC--CSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTC
T ss_pred             HHHHHHHhc--CCCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCc
Confidence            344444444  347899999999999999999877799999999999999999998766  5799999999987653  7


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      ||+|+++.+
T Consensus       104 ~D~v~~~~~  112 (227)
T 1ve3_A          104 FDYVIFIDS  112 (227)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEcCc
Confidence            999999877

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.38  E-value=1.7e-12  Score=105.49  Aligned_cols=82  Identities=18%  Similarity=0.314  Sum_probs=70.6

Q ss_pred             HhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897           24 RKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN  102 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n  102 (232)
                      +.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++...++  +++++.+|+.+.+.. +||+|+++
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~fD~i~~~  191 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANIQENYDFIVST  191 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCCCSCEEEEEEC
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccccCCccEEEEc
Confidence            333334788999999999999999999888999999999999999999988775  699999999987654 79999998


Q ss_pred             cCccc
Q 047897          103 IPYGI  107 (232)
Q Consensus       103 ~p~~~  107 (232)
                      .+++.
T Consensus       192 ~~~~~  196 (286)
T 3m70_A          192 VVFMF  196 (286)
T ss_dssp             SSGGG
T ss_pred             cchhh
Confidence            76553

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.38  E-value=3.5e-12  Score=109.08  Aligned_cols=95  Identities=18%  Similarity=0.309  Sum_probs=77.7

Q ss_pred             CCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHH-------HHHHhhcCC
Q 047897            7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEIL-------NRRAADSGF   77 (232)
Q Consensus         7 ~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a-------~~~~~~~~~   77 (232)
                      .+|+.   .+.++..+++.+++.++++|||||||+|.++..++..  ..+|+|+|+++.+++.|       ++++...|+
T Consensus       222 ~yGet---~p~~v~~ml~~l~l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl  298 (433)
T 1u2z_A          222 VYGEL---LPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGM  298 (433)
T ss_dssp             CCCCB---CHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred             ccccc---cHHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCC
Confidence            44553   3889999999999999999999999999999999983  35899999999999998       889888774


Q ss_pred             C-ccEEEEEcCCCCC------CCCCcceeecccC
Q 047897           78 H-DRLNVISKDALKT------EFPQFDLVVANIP  104 (232)
Q Consensus        78 ~-~~~~~~~~D~~~~------~~~~~D~Vi~n~p  104 (232)
                      . .+++++++|....      ...+||+|++|..
T Consensus       299 ~~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~  332 (433)
T 1u2z_A          299 RLNNVEFSLKKSFVDNNRVAELIPQCDVILVNNF  332 (433)
T ss_dssp             CCCCEEEEESSCSTTCHHHHHHGGGCSEEEECCT
T ss_pred             CCCceEEEEcCccccccccccccCCCCEEEEeCc
Confidence            2 6899999876532      1347999998743

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.38  E-value=6.2e-13  Score=112.84  Aligned_cols=94  Identities=13%  Similarity=0.157  Sum_probs=77.3

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~   89 (232)
                      |+.|+...+.++...- .++.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|+..+++.+ +++++++|+.
T Consensus       195 ff~~~~~~~~~~~~~~-~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~  273 (385)
T 2b78_A          195 IFLDQRQVRNELINGS-AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVF  273 (385)
T ss_dssp             SCGGGHHHHHHHHHTT-TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHH
T ss_pred             cCCcHHHHHHHHHHHh-cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            4456666666665442 477899999999999999999854 589999999999999999999988854 8999999997


Q ss_pred             CCC------CCCcceeecccCcc
Q 047897           90 KTE------FPQFDLVVANIPYG  106 (232)
Q Consensus        90 ~~~------~~~~D~Vi~n~p~~  106 (232)
                      +..      ...||+|++|+|+.
T Consensus       274 ~~l~~~~~~~~~fD~Ii~DPP~~  296 (385)
T 2b78_A          274 DYFKYARRHHLTYDIIIIDPPSF  296 (385)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCC
T ss_pred             HHHHHHHHhCCCccEEEECCCCC
Confidence            742      23799999999984

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.37  E-value=1.2e-12  Score=104.88  Aligned_cols=79  Identities=25%  Similarity=0.437  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-CCCCCcceeecccCcc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-TEFPQFDLVVANIPYG  106 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~~~~~~D~Vi~n~p~~  106 (232)
                      +.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..++..  ++++.+|+.+ ++..+||+|++|++.+
T Consensus       118 ~~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~~~~~~fD~Vv~n~~~~  195 (254)
T 2nxc_A          118 LRPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFGPFDLLVANLYAE  195 (254)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGCCEEEEEEECCHH
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhcCcCCCCCEEEECCcHH
Confidence            457889999999999999999987779999999999999999999988763  8999999877 3345899999998754


Q ss_pred             cc
Q 047897          107 IS  108 (232)
Q Consensus       107 ~~  108 (232)
                      ..
T Consensus       196 ~~  197 (254)
T 2nxc_A          196 LH  197 (254)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.37  E-value=1.1e-12  Score=110.71  Aligned_cols=99  Identities=21%  Similarity=0.209  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---   92 (232)
                      +.+.+.+++.++.. +.+|||+|||+|.++..+++...+|+|+|+++.+++.|++|+..+++ ++++++.+|+.+..   
T Consensus       200 ~~l~~~~~~~~~~~-~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~~d~~~~~~~~  277 (369)
T 3bt7_A          200 IQMLEWALDVTKGS-KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIRMAAEEFTQAM  277 (369)
T ss_dssp             HHHHHHHHHHTTTC-CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEECCCSHHHHHHH
T ss_pred             HHHHHHHHHHhhcC-CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECCHHHHHHHH
Confidence            34555666666654 57899999999999999998888999999999999999999999888 58999999997642   


Q ss_pred             -C--------------CCcceeecccCcccchHHHHHHh
Q 047897           93 -F--------------PQFDLVVANIPYGISSPLVAKLV  116 (232)
Q Consensus        93 -~--------------~~~D~Vi~n~p~~~~~~~l~~~~  116 (232)
                       .              ..||+|+.|+|+....+.+...+
T Consensus       278 ~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l  316 (369)
T 3bt7_A          278 NGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMV  316 (369)
T ss_dssp             SSCCCCTTGGGSCGGGCCEEEEEECCCTTCCCHHHHHHH
T ss_pred             hhccccccccccccccCCCCEEEECcCccccHHHHHHHH
Confidence             1              26999999999864433333333

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.37  E-value=2e-12  Score=102.08  Aligned_cols=102  Identities=22%  Similarity=0.397  Sum_probs=83.5

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ..++.....+...+...++.+|||+|||+|..+..+++.  +.+|+++|+++.+++.|++++...++.++++++.+|+.+
T Consensus        37 ~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  116 (233)
T 2gpy_A           37 IMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQ  116 (233)
T ss_dssp             CCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGG
T ss_pred             CcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHH
Confidence            456777777777776667889999999999999999984  689999999999999999999988876679999999987


Q ss_pred             C-C----CCCcceeecccCcccchHHHHH
Q 047897           91 T-E----FPQFDLVVANIPYGISSPLVAK  114 (232)
Q Consensus        91 ~-~----~~~~D~Vi~n~p~~~~~~~l~~  114 (232)
                      . +    ...||+|+++.+.......+..
T Consensus       117 ~~~~~~~~~~fD~I~~~~~~~~~~~~l~~  145 (233)
T 2gpy_A          117 LGEKLELYPLFDVLFIDAAKGQYRRFFDM  145 (233)
T ss_dssp             SHHHHTTSCCEEEEEEEGGGSCHHHHHHH
T ss_pred             HHHhcccCCCccEEEECCCHHHHHHHHHH
Confidence            5 2    2479999998876543434333

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.37  E-value=2.3e-12  Score=100.96  Aligned_cols=75  Identities=20%  Similarity=0.296  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-CCCC-Ccceee-ccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-TEFP-QFDLVV-ANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-~~~~-~~D~Vi-~n~  103 (232)
                      .++++|+|||||+|.++..++..  ..+|+|+|+++.+++.|++|+..+|+.++++++.+|+++ ++.. +||.|+ +++
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            47789999999999999999984  468999999999999999999999997789999999975 4433 599665 444

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.37  E-value=3.3e-12  Score=103.55  Aligned_cols=92  Identities=18%  Similarity=0.267  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +..+..++..+++.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++++...++.++++++.+|+.+..
T Consensus        98 ~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  177 (277)
T 1o54_A           98 PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF  177 (277)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC
T ss_pred             HHHHHHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcc
Confidence            455567888888889999999999999999999985   67999999999999999999988877568999999998862


Q ss_pred             -CCCcceeecccCccc
Q 047897           93 -FPQFDLVVANIPYGI  107 (232)
Q Consensus        93 -~~~~D~Vi~n~p~~~  107 (232)
                       ...||+|++|+|..+
T Consensus       178 ~~~~~D~V~~~~~~~~  193 (277)
T 1o54_A          178 DEKDVDALFLDVPDPW  193 (277)
T ss_dssp             SCCSEEEEEECCSCGG
T ss_pred             cCCccCEEEECCcCHH
Confidence             247999999998653

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.37  E-value=4.3e-12  Score=99.57  Aligned_cols=94  Identities=14%  Similarity=0.182  Sum_probs=78.0

Q ss_pred             ccCCHHHHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHhc-C--CeEEEEEcCHHHHHHHHHHHhhcCC----CccEE
Q 047897           12 ILTNQRVLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLEV-S--KKVHAIEIDERMVEILNRRAADSGF----HDRLN   82 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~   82 (232)
                      .+.++.+...+++.+.  +.++.+|||+|||+|.++..+++. +  .+|+++|+++.+++.+++++...+.    .++++
T Consensus        57 ~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~  136 (226)
T 1i1n_A           57 TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQ  136 (226)
T ss_dssp             EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEE
T ss_pred             eecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEE
Confidence            3456888888888886  778899999999999999999884 2  6999999999999999999987553    25799


Q ss_pred             EEEcCCCCCCC--CCcceeecccCc
Q 047897           83 VISKDALKTEF--PQFDLVVANIPY  105 (232)
Q Consensus        83 ~~~~D~~~~~~--~~~D~Vi~n~p~  105 (232)
                      ++.+|+.....  .+||+|+++.++
T Consensus       137 ~~~~d~~~~~~~~~~fD~i~~~~~~  161 (226)
T 1i1n_A          137 LVVGDGRMGYAEEAPYDAIHVGAAA  161 (226)
T ss_dssp             EEESCGGGCCGGGCCEEEEEECSBB
T ss_pred             EEECCcccCcccCCCcCEEEECCch
Confidence            99999986543  379999988764

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.37  E-value=1.5e-12  Score=102.79  Aligned_cols=87  Identities=18%  Similarity=0.253  Sum_probs=71.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF   96 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~   96 (232)
                      .+..++......+ .+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++...+...+++++.+|+.+.+.+ +|
T Consensus        55 ~l~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~f  133 (235)
T 3lcc_A           55 LIVHLVDTSSLPL-GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELF  133 (235)
T ss_dssp             HHHHHHHTTCSCC-EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCE
T ss_pred             HHHHHHHhcCCCC-CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCe
Confidence            4444555555444 499999999999999999888899999999999999999997654446799999999997654 89


Q ss_pred             ceeecccCc
Q 047897           97 DLVVANIPY  105 (232)
Q Consensus        97 D~Vi~n~p~  105 (232)
                      |+|+++..+
T Consensus       134 D~v~~~~~l  142 (235)
T 3lcc_A          134 DLIFDYVFF  142 (235)
T ss_dssp             EEEEEESST
T ss_pred             eEEEEChhh
Confidence            999986543

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.37  E-value=1.3e-12  Score=102.47  Aligned_cols=91  Identities=16%  Similarity=0.201  Sum_probs=73.4

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .++.....+...+...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...++.++++++++|+.+
T Consensus        48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (225)
T 3tr6_A           48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD  127 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence            44554444444444446789999999999999999984   789999999999999999999988886679999999966


Q ss_pred             CC-C-------CCcceeecccC
Q 047897           91 TE-F-------PQFDLVVANIP  104 (232)
Q Consensus        91 ~~-~-------~~~D~Vi~n~p  104 (232)
                      .. .       .+||+|+++.+
T Consensus       128 ~~~~~~~~~~~~~fD~v~~~~~  149 (225)
T 3tr6_A          128 TLAELIHAGQAWQYDLIYIDAD  149 (225)
T ss_dssp             HHHHHHTTTCTTCEEEEEECSC
T ss_pred             HHHHhhhccCCCCccEEEECCC
Confidence            41 1       57999998765

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.37  E-value=1.9e-13  Score=109.83  Aligned_cols=86  Identities=16%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             HHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCH-------HHHHHHHHHHhhcCCCccEEEEEcCCCCC-C-C
Q 047897           23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE-------RMVEILNRRAADSGFHDRLNVISKDALKT-E-F   93 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~-------~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~-~   93 (232)
                      .+.+...++.+|||+|||+|.++..++..+.+|+|+|+++       .+++.++++....++.++++++++|+.++ + .
T Consensus        76 ~~a~~~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~  155 (258)
T 2r6z_A           76 AKAVNHTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPAL  155 (258)
T ss_dssp             HHHTTGGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             HHHhCcCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhh
Confidence            3334555678999999999999999999888999999999       99999999887666544599999999874 2 1


Q ss_pred             ----CCcceeecccCcccc
Q 047897           94 ----PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 ----~~~D~Vi~n~p~~~~  108 (232)
                          .+||+|++|+||...
T Consensus       156 ~~~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          156 VKTQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             HHHHCCCSEEEECCCC---
T ss_pred             hccCCCccEEEECCCCCCc
Confidence                579999999998653

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.37  E-value=3.6e-12  Score=103.28  Aligned_cols=92  Identities=27%  Similarity=0.356  Sum_probs=80.0

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhc-C-CCccEEEEEcCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADS-G-FHDRLNVISKDAL   89 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~-~~~~~~~~~~D~~   89 (232)
                      .+..+..+++.+++.++.+|||+|||+|.++..+++.   ..+|+++|+++.+++.+++++... + +.++++++++|+.
T Consensus        84 ~~~~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~  163 (280)
T 1i9g_A           84 YPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLA  163 (280)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGG
T ss_pred             cHHHHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchH
Confidence            4678888999999999999999999999999999983   689999999999999999999876 4 3368999999998


Q ss_pred             CCCC--CCcceeecccCcc
Q 047897           90 KTEF--PQFDLVVANIPYG  106 (232)
Q Consensus        90 ~~~~--~~~D~Vi~n~p~~  106 (232)
                      +.+.  ..||+|++++|..
T Consensus       164 ~~~~~~~~~D~v~~~~~~~  182 (280)
T 1i9g_A          164 DSELPDGSVDRAVLDMLAP  182 (280)
T ss_dssp             GCCCCTTCEEEEEEESSCG
T ss_pred             hcCCCCCceeEEEECCcCH
Confidence            8764  3799999998744

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.36  E-value=4.8e-12  Score=103.60  Aligned_cols=92  Identities=12%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHH---hcCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLL---EVSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALKT   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~---~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~   91 (232)
                      +.+.+.+..... .++.+|||||||+|.++..++   ..+.+|+|+|+++.+++.+++++... +...+++++++|+.++
T Consensus        23 ~~~~~~l~~~~~-~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~  101 (299)
T 3g5t_A           23 SDFYKMIDEYHD-GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDF  101 (299)
T ss_dssp             HHHHHHHHHHCC-SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCC
T ss_pred             HHHHHHHHHHhc-CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhC
Confidence            566666666543 578899999999999999999   46789999999999999999999876 3336899999999987


Q ss_pred             CC--------CCcceeecccCcccc
Q 047897           92 EF--------PQFDLVVANIPYGIS  108 (232)
Q Consensus        92 ~~--------~~~D~Vi~n~p~~~~  108 (232)
                      +.        .+||+|+++..++..
T Consensus       102 ~~~~~~~~~~~~fD~V~~~~~l~~~  126 (299)
T 3g5t_A          102 KFLGADSVDKQKIDMITAVECAHWF  126 (299)
T ss_dssp             GGGCTTTTTSSCEEEEEEESCGGGS
T ss_pred             CccccccccCCCeeEEeHhhHHHHh
Confidence            53        369999998665443

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.36  E-value=4.6e-12  Score=99.83  Aligned_cols=87  Identities=25%  Similarity=0.409  Sum_probs=72.2

Q ss_pred             HHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           18 VLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        18 ~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      ..+.+++.+. ..++.+|||+|||+|.++..+++.  +.+++|+|+|+.+++.+++++...+   +++++.+|+.+.+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~  107 (234)
T 3dtn_A           31 FYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE  107 (234)
T ss_dssp             HHHHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC
T ss_pred             HHHHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC
Confidence            3455566654 457789999999999999999985  7899999999999999999986543   799999999998765


Q ss_pred             -CcceeecccCccc
Q 047897           95 -QFDLVVANIPYGI  107 (232)
Q Consensus        95 -~~D~Vi~n~p~~~  107 (232)
                       +||+|+++.+++.
T Consensus       108 ~~fD~v~~~~~l~~  121 (234)
T 3dtn_A          108 EKYDMVVSALSIHH  121 (234)
T ss_dssp             SCEEEEEEESCGGG
T ss_pred             CCceEEEEeCcccc
Confidence             8999999765443

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.36  E-value=2.3e-12  Score=100.95  Aligned_cols=74  Identities=23%  Similarity=0.310  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----CCCCcceeecc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----EFPQFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~~~~~D~Vi~n  102 (232)
                      ++.+|||||||+|.++..+++  ....|+|+|+++.+++.|++++...++ .|++++.+|+.+.     +..++|.|+++
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l-~nv~~~~~Da~~~l~~~~~~~~~d~v~~~  112 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGL-SNLRVMCHDAVEVLHKMIPDNSLRMVQLF  112 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTC-SSEEEECSCHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCC-CcEEEEECCHHHHHHHHcCCCChheEEEe
Confidence            567999999999999999998  357899999999999999999988887 5799999999873     34589999998


Q ss_pred             cC
Q 047897          103 IP  104 (232)
Q Consensus       103 ~p  104 (232)
                      .|
T Consensus       113 ~~  114 (218)
T 3dxy_A          113 FP  114 (218)
T ss_dssp             SC
T ss_pred             CC
Confidence            44

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.36  E-value=2.5e-12  Score=101.13  Aligned_cols=94  Identities=19%  Similarity=0.230  Sum_probs=77.7

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      .+..++...+.+...+...++.+|||+|||+|..+..+++.   +.+|+++|+++.+++.+++++...++.++++++++|
T Consensus        50 ~~~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d  129 (229)
T 2avd_A           50 DSMMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP  129 (229)
T ss_dssp             GGSCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESC
T ss_pred             CCccCHHHHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcC
Confidence            35566776666655555567889999999999999999983   689999999999999999999988876789999999


Q ss_pred             CCCC--CC------CCcceeecccC
Q 047897           88 ALKT--EF------PQFDLVVANIP  104 (232)
Q Consensus        88 ~~~~--~~------~~~D~Vi~n~p  104 (232)
                      +.+.  ..      .+||+|+++.+
T Consensus       130 ~~~~~~~~~~~~~~~~~D~v~~d~~  154 (229)
T 2avd_A          130 ALETLDELLAAGEAGTFDVAVVDAD  154 (229)
T ss_dssp             HHHHHHHHHHTTCTTCEEEEEECSC
T ss_pred             HHHHHHHHHhcCCCCCccEEEECCC
Confidence            8764  11      57999999876

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.36  E-value=3.8e-12  Score=106.04  Aligned_cols=93  Identities=25%  Similarity=0.399  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-C--CeEEEEEcCHHHHHHHHHHHhhcC----------CCccEE
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-S--KKVHAIEIDERMVEILNRRAADSG----------FHDRLN   82 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~--~~v~~vD~~~~~~~~a~~~~~~~~----------~~~~~~   82 (232)
                      +.....+++.+++.++.+|||+|||+|.++..+++. +  .+|+|+|+++.+++.|++++...+          ...+++
T Consensus        91 ~~~~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~  170 (336)
T 2b25_A           91 PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVD  170 (336)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEE
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceE
Confidence            666788888888899999999999999999999984 3  899999999999999999987532          225799


Q ss_pred             EEEcCCCCC--CC--CCcceeecccCcccc
Q 047897           83 VISKDALKT--EF--PQFDLVVANIPYGIS  108 (232)
Q Consensus        83 ~~~~D~~~~--~~--~~~D~Vi~n~p~~~~  108 (232)
                      ++.+|+.+.  +.  .+||+|++++|....
T Consensus       171 ~~~~d~~~~~~~~~~~~fD~V~~~~~~~~~  200 (336)
T 2b25_A          171 FIHKDISGATEDIKSLTFDAVALDMLNPHV  200 (336)
T ss_dssp             EEESCTTCCC-------EEEEEECSSSTTT
T ss_pred             EEECChHHcccccCCCCeeEEEECCCCHHH
Confidence            999999886  22  369999998875433

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.36  E-value=9.6e-12  Score=98.10  Aligned_cols=87  Identities=18%  Similarity=0.258  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcC---CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           16 QRVLDSIVRKSS---INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        16 ~~~~~~i~~~~~---~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ..+...++..++   +.++++|||+|||+|..+..+++   ...+|+|+|+++.+++.+.+.....   .|+.++.+|+.
T Consensus        59 skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~  135 (232)
T 3id6_C           59 SKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADAR  135 (232)
T ss_dssp             CHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTT
T ss_pred             HHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccc
Confidence            467777777665   78999999999999999999988   3569999999999876665555432   47999999997


Q ss_pred             CCC-----CCCcceeecccCc
Q 047897           90 KTE-----FPQFDLVVANIPY  105 (232)
Q Consensus        90 ~~~-----~~~~D~Vi~n~p~  105 (232)
                      ...     .++||+|++|.+.
T Consensus       136 ~~~~~~~~~~~~D~I~~d~a~  156 (232)
T 3id6_C          136 FPQSYKSVVENVDVLYVDIAQ  156 (232)
T ss_dssp             CGGGTTTTCCCEEEEEECCCC
T ss_pred             cchhhhccccceEEEEecCCC
Confidence            642     2479999999875

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.35  E-value=1.7e-12  Score=110.53  Aligned_cols=94  Identities=17%  Similarity=0.221  Sum_probs=76.2

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCC-CccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGF-HDRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~   89 (232)
                      |+.++.....++..+  .++.+|||+|||+|.++..++.. ..+|+|+|+++.+++.|++++..+++ .++++++++|+.
T Consensus       204 ff~~~~~~~~~l~~~--~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~  281 (396)
T 3c0k_A          204 YYLDQRDSRLATRRY--VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVF  281 (396)
T ss_dssp             SCGGGHHHHHHHHHH--CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred             cCcCHHHHHHHHHHh--hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHH
Confidence            343444444444444  47789999999999999999996 46999999999999999999998887 558999999998


Q ss_pred             CCC------CCCcceeecccCccc
Q 047897           90 KTE------FPQFDLVVANIPYGI  107 (232)
Q Consensus        90 ~~~------~~~~D~Vi~n~p~~~  107 (232)
                      +..      ...||+|++|+|+..
T Consensus       282 ~~~~~~~~~~~~fD~Ii~dpP~~~  305 (396)
T 3c0k_A          282 KLLRTYRDRGEKFDVIVMDPPKFV  305 (396)
T ss_dssp             HHHHHHHHTTCCEEEEEECCSSTT
T ss_pred             HHHHHHHhcCCCCCEEEECCCCCC
Confidence            753      247999999999744

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.35  E-value=2.4e-12  Score=102.85  Aligned_cols=87  Identities=21%  Similarity=0.211  Sum_probs=74.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      ......+++.+...++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.++++.      ++++++.+|+.+++.
T Consensus        19 ~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~   92 (259)
T 2p35_A           19 TRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLATWKP   92 (259)
T ss_dssp             GHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTTCCC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhhcCc
Confidence            466778888888888899999999999999999985  889999999999999999882      579999999998763


Q ss_pred             -CCcceeecccCcccc
Q 047897           94 -PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 -~~~D~Vi~n~p~~~~  108 (232)
                       .+||+|+++..++..
T Consensus        93 ~~~fD~v~~~~~l~~~  108 (259)
T 2p35_A           93 AQKADLLYANAVFQWV  108 (259)
T ss_dssp             SSCEEEEEEESCGGGS
T ss_pred             cCCcCEEEEeCchhhC
Confidence             379999998776654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.35  E-value=2.9e-12  Score=106.47  Aligned_cols=86  Identities=20%  Similarity=0.430  Sum_probs=71.8

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--C
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--Q   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~   95 (232)
                      .+.+.+.+...++.+|||+|||+|.++..+++.+ .+|+|+|++ .+++.|++++...++.++++++++|+.+.+.+  +
T Consensus        27 ~~ai~~~~~~~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~  105 (328)
T 1g6q_1           27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPK  105 (328)
T ss_dssp             HHHHHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSC
T ss_pred             HHHHHhhHhhcCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCc
Confidence            3444444445578899999999999999999865 599999999 59999999999888877899999999987654  7


Q ss_pred             cceeecccCc
Q 047897           96 FDLVVANIPY  105 (232)
Q Consensus        96 ~D~Vi~n~p~  105 (232)
                      ||+|+++.+.
T Consensus       106 ~D~Ivs~~~~  115 (328)
T 1g6q_1          106 VDIIISEWMG  115 (328)
T ss_dssp             EEEEEECCCB
T ss_pred             ccEEEEeCch
Confidence            9999998763

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.35  E-value=8.3e-13  Score=107.05  Aligned_cols=88  Identities=19%  Similarity=0.181  Sum_probs=74.4

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----   92 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----   92 (232)
                      ..+...+++.++++|||+|||+|..|..+++  .+ .+|+|+|+++.+++.+++++...|+ .+++++++|+.+++    
T Consensus        73 ~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           73 MIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGV-LNTIIINADMRKYKDYLL  151 (274)
T ss_dssp             GHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCHHHHHHHHH
T ss_pred             HHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCC-CcEEEEeCChHhcchhhh
Confidence            3445566778899999999999999999987  34 7999999999999999999999887 48999999998764    


Q ss_pred             --CCCcceeecccCcccc
Q 047897           93 --FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~  108 (232)
                        ...||.|++|+|+...
T Consensus       152 ~~~~~fD~Vl~d~Pcs~~  169 (274)
T 3ajd_A          152 KNEIFFDKILLDAPCSGN  169 (274)
T ss_dssp             HTTCCEEEEEEEECCC--
T ss_pred             hccccCCEEEEcCCCCCC
Confidence              3479999999998653

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.35  E-value=6.7e-12  Score=98.87  Aligned_cols=90  Identities=16%  Similarity=0.234  Sum_probs=73.8

Q ss_pred             HHHHHHHH---hcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           17 RVLDSIVR---KSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        17 ~~~~~i~~---~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+.++.   .+.+++|++|||+|||+|.++..+++   ...+|+|+|++++|++.+++++...   +|+..+.+|+.+
T Consensus        61 klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~  137 (233)
T 4df3_A           61 KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARF  137 (233)
T ss_dssp             HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTC
T ss_pred             HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccC
Confidence            45666665   35688999999999999999999998   4589999999999999999988764   579999999876


Q ss_pred             CC-----CCCcceeecccCcccch
Q 047897           91 TE-----FPQFDLVVANIPYGISS  109 (232)
Q Consensus        91 ~~-----~~~~D~Vi~n~p~~~~~  109 (232)
                      ..     .+.+|+|+++++++...
T Consensus       138 p~~~~~~~~~vDvVf~d~~~~~~~  161 (233)
T 4df3_A          138 PEKYRHLVEGVDGLYADVAQPEQA  161 (233)
T ss_dssp             GGGGTTTCCCEEEEEECCCCTTHH
T ss_pred             ccccccccceEEEEEEeccCChhH
Confidence            42     23689999998876553

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.35  E-value=3.5e-12  Score=103.33  Aligned_cols=88  Identities=20%  Similarity=0.317  Sum_probs=70.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCCCCC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALKTEF   93 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~~~   93 (232)
                      .++.+++.+++.++.+|||+|||+|.++..+++.   +.+|+|+|+++.+++.+++++... |. ++++++.+|+.+...
T Consensus        98 ~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~~~~  176 (275)
T 1yb2_A           98 DASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIADFIS  176 (275)
T ss_dssp             --------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTTCCC
T ss_pred             hHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhccCc
Confidence            3446677778888999999999999999999885   689999999999999999999887 75 589999999988422


Q ss_pred             -CCcceeecccCcc
Q 047897           94 -PQFDLVVANIPYG  106 (232)
Q Consensus        94 -~~~D~Vi~n~p~~  106 (232)
                       .+||+|++++|..
T Consensus       177 ~~~fD~Vi~~~~~~  190 (275)
T 1yb2_A          177 DQMYDAVIADIPDP  190 (275)
T ss_dssp             SCCEEEEEECCSCG
T ss_pred             CCCccEEEEcCcCH
Confidence             3799999988743

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.35  E-value=1.6e-12  Score=103.20  Aligned_cols=74  Identities=16%  Similarity=0.244  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeec
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVA  101 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~  101 (232)
                      .++.+|||+|||+|.++..++.  .+.+|+|+|+++.+++.++++....++ ++++++++|+.+++.     ++||+|++
T Consensus        69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCEEEEeccHHHhcccccccCCccEEEE
Confidence            4678999999999999999985  578999999999999999999998887 479999999987652     47999998


Q ss_pred             cc
Q 047897          102 NI  103 (232)
Q Consensus       102 n~  103 (232)
                      +.
T Consensus       148 ~~  149 (240)
T 1xdz_A          148 RA  149 (240)
T ss_dssp             EC
T ss_pred             ec
Confidence            65

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.35  E-value=1.9e-12  Score=109.83  Aligned_cols=78  Identities=12%  Similarity=0.076  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc--CCCccEEEEEcCCCCC-CC---CCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS--GFHDRLNVISKDALKT-EF---PQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~~~~~~~~~~D~~~~-~~---~~~D~Vi~n~  103 (232)
                      ++.+|||+|||+|..+..+++.+.+|+|+|+|+.+++.+++|+...  |+ ++++++++|+.+. +.   .+||+|++||
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            4889999999999999999998899999999999999999999987  77 6899999999985 22   3799999999


Q ss_pred             Ccccc
Q 047897          104 PYGIS  108 (232)
Q Consensus       104 p~~~~  108 (232)
                      ||...
T Consensus       172 Prr~~  176 (410)
T 3ll7_A          172 ARRSG  176 (410)
T ss_dssp             EEC--
T ss_pred             CCcCC
Confidence            99763

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.35  E-value=2.7e-12  Score=107.53  Aligned_cols=77  Identities=21%  Similarity=0.382  Sum_probs=67.6

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      .+.++.+|||+|||+|.++..+++.+ .+|+|+|++ ++++.|++++...++.++++++++|+.+.+.+  +||+|+++.
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~  141 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW  141 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcc
Confidence            34578899999999999999999964 599999999 49999999999988877799999999988654  899999986


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      +
T Consensus       142 ~  142 (349)
T 3q7e_A          142 M  142 (349)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.34  E-value=3.4e-12  Score=106.71  Aligned_cols=88  Identities=18%  Similarity=0.312  Sum_probs=76.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ..+.+++.+...++.+|||+|||+|.++..+++.+  .+|+++|+|+.+++.+++++...+..  .+++.+|+.+...++
T Consensus       184 ~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~--~~~~~~d~~~~~~~~  261 (343)
T 2pjd_A          184 GSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVE--GEVFASNVFSEVKGR  261 (343)
T ss_dssp             HHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCC--CEEEECSTTTTCCSC
T ss_pred             HHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC--CEEEEccccccccCC
Confidence            56777788866667899999999999999998843  69999999999999999999887753  678999998876668


Q ss_pred             cceeecccCccc
Q 047897           96 FDLVVANIPYGI  107 (232)
Q Consensus        96 ~D~Vi~n~p~~~  107 (232)
                      ||+|++|+||+.
T Consensus       262 fD~Iv~~~~~~~  273 (343)
T 2pjd_A          262 FDMIISNPPFHD  273 (343)
T ss_dssp             EEEEEECCCCCS
T ss_pred             eeEEEECCCccc
Confidence            999999999985

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.34  E-value=4.1e-12  Score=99.93  Aligned_cols=95  Identities=15%  Similarity=0.262  Sum_probs=77.8

Q ss_pred             cccccCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHhc-C-------CeEEEEEcCHHHHHHHHHHHhhcC--
Q 047897            9 GQHILTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLEV-S-------KKVHAIEIDERMVEILNRRAADSG--   76 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~~-~-------~~v~~vD~~~~~~~~a~~~~~~~~--   76 (232)
                      || .+..|.+...+++.+  .+.++.+|||+|||+|.++..+++. +       .+|+++|+++.+++.+++++...+  
T Consensus        62 ~~-~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~  140 (227)
T 1r18_A           62 GV-TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRS  140 (227)
T ss_dssp             TE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             CC-ccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCcc
Confidence            44 344688899999988  4778899999999999999999882 3       599999999999999999987654  


Q ss_pred             ---CCccEEEEEcCCCCC-CC-CCcceeecccCc
Q 047897           77 ---FHDRLNVISKDALKT-EF-PQFDLVVANIPY  105 (232)
Q Consensus        77 ---~~~~~~~~~~D~~~~-~~-~~~D~Vi~n~p~  105 (232)
                         . .+++++.+|+.+. +. .+||+|+++.+.
T Consensus       141 ~~~~-~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  173 (227)
T 1r18_A          141 MLDS-GQLLIVEGDGRKGYPPNAPYNAIHVGAAA  173 (227)
T ss_dssp             HHHH-TSEEEEESCGGGCCGGGCSEEEEEECSCB
T ss_pred             ccCC-CceEEEECCcccCCCcCCCccEEEECCch
Confidence               2 4799999999873 22 479999987654

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.34  E-value=3.3e-12  Score=105.57  Aligned_cols=90  Identities=14%  Similarity=0.149  Sum_probs=76.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      .....+...+++.++.+|||+|||+|..|..+++.   ..+|+|+|+++.+++.+++++...|+ .+++++++|+.+++.
T Consensus       105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~-~~v~~~~~D~~~~~~  183 (315)
T 1ixk_A          105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGE  183 (315)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCC-CeEEEEECChhhccc
Confidence            44444556678889999999999999999999973   47999999999999999999998887 479999999988753


Q ss_pred             --CCcceeecccCccc
Q 047897           94 --PQFDLVVANIPYGI  107 (232)
Q Consensus        94 --~~~D~Vi~n~p~~~  107 (232)
                        ..||.|++|+|+..
T Consensus       184 ~~~~fD~Il~d~Pcsg  199 (315)
T 1ixk_A          184 LNVEFDKILLDAPCTG  199 (315)
T ss_dssp             GCCCEEEEEEECCTTS
T ss_pred             ccccCCEEEEeCCCCC
Confidence              37999999999643

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.34  E-value=1.5e-12  Score=105.52  Aligned_cols=86  Identities=21%  Similarity=0.263  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +.+.+.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++.      +++.++.+|+.+++.+ 
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~  116 (279)
T 3ccf_A           43 WQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRVDK  116 (279)
T ss_dssp             SSSCCHHHHHHCCCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCCSS
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCcCC
Confidence            345556677777778899999999999999999998899999999999999999875      4688999999988765 


Q ss_pred             CcceeecccCccc
Q 047897           95 QFDLVVANIPYGI  107 (232)
Q Consensus        95 ~~D~Vi~n~p~~~  107 (232)
                      +||+|+++..++.
T Consensus       117 ~fD~v~~~~~l~~  129 (279)
T 3ccf_A          117 PLDAVFSNAMLHW  129 (279)
T ss_dssp             CEEEEEEESCGGG
T ss_pred             CcCEEEEcchhhh
Confidence            7999999766543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.34  E-value=5.2e-12  Score=98.56  Aligned_cols=76  Identities=17%  Similarity=0.215  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCcceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~D~Vi~n  102 (232)
                      .++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.|++++...++ ++++++++|+.+++    ..++|.|+++
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~  115 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLN  115 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEE
Confidence            35779999999999999999883  68999999999999999999988887 58999999998753    3479999887


Q ss_pred             cCc
Q 047897          103 IPY  105 (232)
Q Consensus       103 ~p~  105 (232)
                      .|.
T Consensus       116 ~~~  118 (213)
T 2fca_A          116 FSD  118 (213)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            654

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.34  E-value=2.3e-12  Score=103.03  Aligned_cols=74  Identities=18%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeec
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVA  101 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~  101 (232)
                      .++.+|||||||+|..+..++.  ...+|+++|+++.+++.+++++...++ .+++++++|+.+++.     ++||+|++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l-~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGL-KGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEECcHHHhhcccccCCCceEEEE
Confidence            4678999999999999999887  468999999999999999999999888 469999999988653     47999998


Q ss_pred             cc
Q 047897          102 NI  103 (232)
Q Consensus       102 n~  103 (232)
                      +.
T Consensus       158 ~a  159 (249)
T 3g89_A          158 RA  159 (249)
T ss_dssp             ES
T ss_pred             CC
Confidence            64

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.33  E-value=4.3e-12  Score=103.89  Aligned_cols=86  Identities=22%  Similarity=0.378  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC--ccEEEEEcCCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH--DRLNVISKDALKTE   92 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~--~~~~~~~~D~~~~~   92 (232)
                      .......+++.+...++ +|||||||+|.++..+++.+.+|+|+|+|+.+++.+++++...+..  .+++++++|+.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~  146 (299)
T 3g2m_A           68 GTSEAREFATRTGPVSG-PVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA  146 (299)
T ss_dssp             CHHHHHHHHHHHCCCCS-CEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC
T ss_pred             ccHHHHHHHHhhCCCCC-cEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC
Confidence            45677778887765444 8999999999999999998899999999999999999999876531  47999999999987


Q ss_pred             CC-Ccceeec
Q 047897           93 FP-QFDLVVA  101 (232)
Q Consensus        93 ~~-~~D~Vi~  101 (232)
                      .+ +||+|++
T Consensus       147 ~~~~fD~v~~  156 (299)
T 3g2m_A          147 LDKRFGTVVI  156 (299)
T ss_dssp             CSCCEEEEEE
T ss_pred             cCCCcCEEEE
Confidence            65 7998874

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.33  E-value=2.9e-12  Score=103.42  Aligned_cols=89  Identities=24%  Similarity=0.270  Sum_probs=73.8

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-C--CeEEEEEcCHH------HHHHHHHHHhhcCCCccEEEEEcC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-S--KKVHAIEIDER------MVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~--~~v~~vD~~~~------~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      .....+++.+.+.++.+|||||||+|.++..+++. +  .+|+|+|+++.      +++.+++++...++.++++++.+|
T Consensus        30 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           30 AHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            45567777888889999999999999999999984 3  89999999997      999999999887776689999998


Q ss_pred             -C--CCCCC--CCcceeecccCc
Q 047897           88 -A--LKTEF--PQFDLVVANIPY  105 (232)
Q Consensus        88 -~--~~~~~--~~~D~Vi~n~p~  105 (232)
                       .  ...++  .+||+|+++.++
T Consensus       110 ~~~~~~~~~~~~~fD~v~~~~~l  132 (275)
T 3bkx_A          110 NLSDDLGPIADQHFDRVVLAHSL  132 (275)
T ss_dssp             CTTTCCGGGTTCCCSEEEEESCG
T ss_pred             hhhhccCCCCCCCEEEEEEccch
Confidence             3  33333  479999987654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.33  E-value=2.7e-12  Score=101.83  Aligned_cols=92  Identities=16%  Similarity=0.217  Sum_probs=76.4

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ..++...+.+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...+..++++++.+|+.
T Consensus        43 ~~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~  122 (239)
T 2hnk_A           43 QISPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSAL  122 (239)
T ss_dssp             SCCHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHH
Confidence            455777777777666667889999999999999999984   68999999999999999999988887567999999987


Q ss_pred             CC-C-----------------C-CCcceeecccC
Q 047897           90 KT-E-----------------F-PQFDLVVANIP  104 (232)
Q Consensus        90 ~~-~-----------------~-~~~D~Vi~n~p  104 (232)
                      +. +                 . .+||+|+++..
T Consensus       123 ~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~  156 (239)
T 2hnk_A          123 ETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDAD  156 (239)
T ss_dssp             HHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSC
T ss_pred             HHHHHHHhhcccccccccccCCCCCcCEEEEeCC
Confidence            63 1                 1 57999998743

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.33  E-value=3.9e-12  Score=108.35  Aligned_cols=96  Identities=25%  Similarity=0.341  Sum_probs=78.7

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      .|+.++.....++..+ ..++.+|||+|||+|.++..++.. ..+|+|+|+++.+++.|++++..+++.++++++++|+.
T Consensus       199 g~f~~~~~~~~~~~~~-~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~  277 (396)
T 2as0_A          199 GFFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAF  277 (396)
T ss_dssp             CCCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CccCCHHHHHHHHHHH-hhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHH
Confidence            3555555556665544 247889999999999999999986 46999999999999999999999887558999999998


Q ss_pred             CCC------CCCcceeecccCccc
Q 047897           90 KTE------FPQFDLVVANIPYGI  107 (232)
Q Consensus        90 ~~~------~~~~D~Vi~n~p~~~  107 (232)
                      +..      ..+||+|++|+|+..
T Consensus       278 ~~~~~~~~~~~~fD~Vi~dpP~~~  301 (396)
T 2as0_A          278 EEMEKLQKKGEKFDIVVLDPPAFV  301 (396)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCCSC
T ss_pred             HHHHHHHhhCCCCCEEEECCCCCC
Confidence            753      247999999999754

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.32  E-value=5e-12  Score=97.78  Aligned_cols=85  Identities=14%  Similarity=0.263  Sum_probs=70.0

Q ss_pred             HHHHHHHhcCCC---CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           18 VLDSIVRKSSIN---PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        18 ~~~~i~~~~~~~---~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +.+.+++.+...   ++.+|||+|||+|.++..++..  +.+++|+|+++.+++.+++++...++. +++++++|+.+.+
T Consensus        50 ~~~~~~~~l~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~  128 (207)
T 1jsx_A           50 LVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP  128 (207)
T ss_dssp             HHHHHHHHHHHGGGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC
T ss_pred             HHHHHHhhhhhhhhcCCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC
Confidence            455555554322   3789999999999999999983  689999999999999999999988773 5999999999876


Q ss_pred             C-CCcceeeccc
Q 047897           93 F-PQFDLVVANI  103 (232)
Q Consensus        93 ~-~~~D~Vi~n~  103 (232)
                      . .+||+|+++.
T Consensus       129 ~~~~~D~i~~~~  140 (207)
T 1jsx_A          129 SEPPFDGVISRA  140 (207)
T ss_dssp             CCSCEEEEECSC
T ss_pred             ccCCcCEEEEec
Confidence            3 4799999864

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.32  E-value=6.5e-12  Score=99.05  Aligned_cols=86  Identities=21%  Similarity=0.350  Sum_probs=70.5

Q ss_pred             HHHHHH---HHhcCCCCCCEEEEEcCCccHhHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-
Q 047897           17 RVLDSI---VRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-   90 (232)
Q Consensus        17 ~~~~~i---~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-   90 (232)
                      .+++.+   ++.+.+.++.+|||+|||+|.++..+++..  .+|+|+|+++.+++.+++++...   +++.++.+|+.+ 
T Consensus        58 ~~~~~i~~~l~~~~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~  134 (230)
T 1fbn_A           58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKP  134 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCG
T ss_pred             HHHHHHHhcccccCCCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCc
Confidence            344666   555566788999999999999999999853  79999999999999999998654   579999999987 


Q ss_pred             ---CCC-CCcceeecccCc
Q 047897           91 ---TEF-PQFDLVVANIPY  105 (232)
Q Consensus        91 ---~~~-~~~D~Vi~n~p~  105 (232)
                         .+. ..||+|+.+++.
T Consensus       135 ~~~~~~~~~~D~v~~~~~~  153 (230)
T 1fbn_A          135 QEYANIVEKVDVIYEDVAQ  153 (230)
T ss_dssp             GGGTTTSCCEEEEEECCCS
T ss_pred             ccccccCccEEEEEEecCC
Confidence               544 479999977653

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.32  E-value=3e-12  Score=99.91  Aligned_cols=82  Identities=30%  Similarity=0.428  Sum_probs=69.2

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccce
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDL   98 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~   98 (232)
                      ..+++.+...++.+|||+|||+|.++..+++.+.+++|+|+++.+++.+++++.     .+++++.+|+.+++.+ +||+
T Consensus        35 ~~~l~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~~~fD~  109 (220)
T 3hnr_A           35 EDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVPTSIDT  109 (220)
T ss_dssp             HHHHHHHHHTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCCSCCSE
T ss_pred             HHHHHHhhccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCCCCeEE
Confidence            345555555578899999999999999999988999999999999999999874     3689999999998764 8999


Q ss_pred             eecccCcc
Q 047897           99 VVANIPYG  106 (232)
Q Consensus        99 Vi~n~p~~  106 (232)
                      |+++..++
T Consensus       110 v~~~~~l~  117 (220)
T 3hnr_A          110 IVSTYAFH  117 (220)
T ss_dssp             EEEESCGG
T ss_pred             EEECcchh
Confidence            99976543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.32  E-value=4.2e-12  Score=104.32  Aligned_cols=80  Identities=20%  Similarity=0.191  Sum_probs=69.6

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHH--h-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeecc
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLL--E-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVAN  102 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~--~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n  102 (232)
                      .+.++.+|||||||+|.++..++  . .+.+|+|+|+|+.+++.+++++...++.++++++++|+.+.+.+ +||+|+++
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~  194 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSN  194 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECC
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEEC
Confidence            34678899999999999999985  2 56799999999999999999999888767799999999998754 89999997


Q ss_pred             cCcc
Q 047897          103 IPYG  106 (232)
Q Consensus       103 ~p~~  106 (232)
                      .+++
T Consensus       195 ~~~~  198 (305)
T 3ocj_A          195 GLNI  198 (305)
T ss_dssp             SSGG
T ss_pred             Chhh
Confidence            6644

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.32  E-value=5.3e-12  Score=103.86  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC----
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF----   93 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----   93 (232)
                      .....+++.++++|||+|||+|..|..+++   ...+|+|+|+++.+++.+++++...|+ .+++++++|+.+++.    
T Consensus        93 l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~  171 (309)
T 2b9e_A           93 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPR  171 (309)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGG
T ss_pred             HHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccc
Confidence            344566778999999999999999999988   247999999999999999999999888 579999999988643    


Q ss_pred             -CCcceeecccCcccc
Q 047897           94 -PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 -~~~D~Vi~n~p~~~~  108 (232)
                       ..||.|++|+|+...
T Consensus       172 ~~~fD~Vl~D~PcSg~  187 (309)
T 2b9e_A          172 YHEVHYILLDPSCSGS  187 (309)
T ss_dssp             GTTEEEEEECCCCCC-
T ss_pred             cCCCCEEEEcCCcCCC
Confidence             369999999998654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.32  E-value=7.4e-12  Score=99.04  Aligned_cols=88  Identities=23%  Similarity=0.325  Sum_probs=72.0

Q ss_pred             HHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           17 RVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        17 ~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+.+.+.+.+..  .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++....+.  +++++.+|+.+.+.+
T Consensus        22 ~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~   99 (246)
T 1y8c_A           22 KWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN   99 (246)
T ss_dssp             HHHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc
Confidence            445555554432  2678999999999999999999888999999999999999999987653  699999999987664


Q ss_pred             -Ccceeeccc-Ccc
Q 047897           95 -QFDLVVANI-PYG  106 (232)
Q Consensus        95 -~~D~Vi~n~-p~~  106 (232)
                       +||+|+++. .++
T Consensus       100 ~~fD~v~~~~~~l~  113 (246)
T 1y8c_A          100 RKFDLITCCLDSTN  113 (246)
T ss_dssp             CCEEEEEECTTGGG
T ss_pred             CCceEEEEcCcccc
Confidence             899999875 443

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.31  E-value=6.9e-12  Score=100.11  Aligned_cols=91  Identities=16%  Similarity=0.188  Sum_probs=73.0

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ..+.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+
T Consensus        63 ~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~  142 (247)
T 1sui_A           63 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  142 (247)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHH
Confidence            44554444444444446779999999999999999883   689999999999999999999988886789999999976


Q ss_pred             C-C--------CCCcceeecccC
Q 047897           91 T-E--------FPQFDLVVANIP  104 (232)
Q Consensus        91 ~-~--------~~~~D~Vi~n~p  104 (232)
                      . +        .++||+|+++.+
T Consensus       143 ~l~~l~~~~~~~~~fD~V~~d~~  165 (247)
T 1sui_A          143 VLDEMIKDEKNHGSYDFIFVDAD  165 (247)
T ss_dssp             HHHHHHHSGGGTTCBSEEEECSC
T ss_pred             HHHHHHhccCCCCCEEEEEEcCc
Confidence            4 2        357999998754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.31  E-value=4.1e-12  Score=100.52  Aligned_cols=83  Identities=16%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--C
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--E   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--~   92 (232)
                      ..+++.+...+ ..++.+|||||||+|.++..+++.+ .+|+|+|+|+.+++.|+++....+  .+++++++|+.+.  +
T Consensus        47 ~~~~~~l~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~  123 (236)
T 1zx0_A           47 TPYMHALAAAA-SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  123 (236)
T ss_dssp             HHHHHHHHHHH-TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHHhhc-CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcc
Confidence            45556665554 4578899999999999999998743 499999999999999999988766  5799999999876  5


Q ss_pred             C--CCcceeec
Q 047897           93 F--PQFDLVVA  101 (232)
Q Consensus        93 ~--~~~D~Vi~  101 (232)
                      +  .+||+|++
T Consensus       124 ~~~~~fD~V~~  134 (236)
T 1zx0_A          124 LPDGHFDGILY  134 (236)
T ss_dssp             SCTTCEEEEEE
T ss_pred             cCCCceEEEEE
Confidence            4  37999998

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.31  E-value=8.5e-12  Score=100.79  Aligned_cols=88  Identities=18%  Similarity=0.327  Sum_probs=73.4

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      +.+.+.....+.++.+|||||||+|.++..+++.  +.+|+|+|+++.+++.+++++...+. ++++++.+|+.+.+.+ 
T Consensus        25 l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~  103 (276)
T 3mgg_A           25 LEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGI-KNVKFLQANIFSLPFED  103 (276)
T ss_dssp             HHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGCCSCT
T ss_pred             HHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CCcEEEEcccccCCCCC
Confidence            3334444455678899999999999999999984  78999999999999999999988877 4799999999987754 


Q ss_pred             -CcceeecccCcc
Q 047897           95 -QFDLVVANIPYG  106 (232)
Q Consensus        95 -~~D~Vi~n~p~~  106 (232)
                       +||+|+++..++
T Consensus       104 ~~fD~v~~~~~l~  116 (276)
T 3mgg_A          104 SSFDHIFVCFVLE  116 (276)
T ss_dssp             TCEEEEEEESCGG
T ss_pred             CCeeEEEEechhh
Confidence             799999876543

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.31  E-value=6.9e-13  Score=105.60  Aligned_cols=93  Identities=17%  Similarity=0.153  Sum_probs=76.3

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      +..++.....+...+...++.+|||||||+|..+..+++   .+.+|+++|+++.+++.|++++...++.++++++.+|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            335566555555555555678999999999999999998   36899999999999999999999988877899999999


Q ss_pred             CCCC--------CCCcceeecccC
Q 047897           89 LKTE--------FPQFDLVVANIP  104 (232)
Q Consensus        89 ~~~~--------~~~~D~Vi~n~p  104 (232)
                      .+..        .++||+|+++.+
T Consensus       122 ~~~l~~~~~~~~~~~fD~V~~d~~  145 (242)
T 3r3h_A          122 LDTLHSLLNEGGEHQFDFIFIDAD  145 (242)
T ss_dssp             HHHHHHHHHHHCSSCEEEEEEESC
T ss_pred             HHHHHHHhhccCCCCEeEEEEcCC
Confidence            7642        258999999865

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.31  E-value=1.2e-11  Score=95.85  Aligned_cols=91  Identities=20%  Similarity=0.353  Sum_probs=71.6

Q ss_pred             cccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           11 HILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      .|..+...+..++... +.++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++....   ++++++.+|+.
T Consensus        24 ~~~~~~~~~~~~l~~~-~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~---~~i~~~~~d~~   99 (215)
T 2pxx_A           24 DWFGDFSSFRALLEPE-LRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHV---PQLRWETMDVR   99 (215)
T ss_dssp             CTTCCHHHHHHHHGGG-CCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTC---TTCEEEECCTT
T ss_pred             ccccCHHHHHHHHHHh-cCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccC---CCcEEEEcchh
Confidence            3444454444444433 25778999999999999999998654 8999999999999999998642   57999999999


Q ss_pred             CCCCC--CcceeecccCc
Q 047897           90 KTEFP--QFDLVVANIPY  105 (232)
Q Consensus        90 ~~~~~--~~D~Vi~n~p~  105 (232)
                      +++.+  +||+|+++.++
T Consensus       100 ~~~~~~~~fD~v~~~~~~  117 (215)
T 2pxx_A          100 KLDFPSASFDVVLEKGTL  117 (215)
T ss_dssp             SCCSCSSCEEEEEEESHH
T ss_pred             cCCCCCCcccEEEECcch
Confidence            87654  79999988664

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.30  E-value=6.7e-12  Score=106.53  Aligned_cols=92  Identities=20%  Similarity=0.273  Sum_probs=73.3

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++.++...+.++... ..++.+|||+|||+|.++..++..+..|+|+|+|+.+++.+++|+..+++.  ..+.++|+.+.
T Consensus       197 ~f~dqr~~r~~l~~~-~~~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~  273 (393)
T 4dmg_A          197 YYLDQRENRRLFEAM-VRPGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPT  273 (393)
T ss_dssp             SCGGGHHHHHHHHTT-CCTTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHH
T ss_pred             cCCCHHHHHHHHHHH-hcCCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHH
Confidence            334455555555543 235889999999999999999998778999999999999999999998875  35669999875


Q ss_pred             C---CCCcceeecccCcc
Q 047897           92 E---FPQFDLVVANIPYG  106 (232)
Q Consensus        92 ~---~~~~D~Vi~n~p~~  106 (232)
                      .   .+.||+|++|+|+.
T Consensus       274 l~~~~~~fD~Ii~dpP~f  291 (393)
T 4dmg_A          274 LRGLEGPFHHVLLDPPTL  291 (393)
T ss_dssp             HHTCCCCEEEEEECCCCC
T ss_pred             HHHhcCCCCEEEECCCcC
Confidence            2   23599999999973

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.30  E-value=1e-11  Score=99.03  Aligned_cols=82  Identities=20%  Similarity=0.270  Sum_probs=69.1

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Cc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QF   96 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~   96 (232)
                      ..+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++..    ..+++++.+|+.+++.+  +|
T Consensus        34 ~~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~f  109 (253)
T 3g5l_A           34 HELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAY  109 (253)
T ss_dssp             HHHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCE
T ss_pred             HHHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCe
Confidence            3455566666788999999999999999999765 99999999999999999876    25799999999988763  89


Q ss_pred             ceeecccCc
Q 047897           97 DLVVANIPY  105 (232)
Q Consensus        97 D~Vi~n~p~  105 (232)
                      |+|+++..+
T Consensus       110 D~v~~~~~l  118 (253)
T 3g5l_A          110 NVVLSSLAL  118 (253)
T ss_dssp             EEEEEESCG
T ss_pred             EEEEEchhh
Confidence            999987543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.30  E-value=3.2e-12  Score=108.41  Aligned_cols=92  Identities=20%  Similarity=0.213  Sum_probs=75.5

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      |+.++.....++..+   ++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..+++. +++++++|+.+.
T Consensus       194 ~f~~~~~~~~~~~~~---~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~  269 (382)
T 1wxx_A          194 AYLDQRENRLYMERF---RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDL  269 (382)
T ss_dssp             CCGGGHHHHHHGGGC---CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHH
T ss_pred             cccchHHHHHHHHhc---CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHH
Confidence            444444444444444   6789999999999999999987789999999999999999999998874 599999999875


Q ss_pred             C------CCCcceeecccCccc
Q 047897           92 E------FPQFDLVVANIPYGI  107 (232)
Q Consensus        92 ~------~~~~D~Vi~n~p~~~  107 (232)
                      .      ...||+|++|+|+..
T Consensus       270 ~~~~~~~~~~fD~Ii~dpP~~~  291 (382)
T 1wxx_A          270 LRRLEKEGERFDLVVLDPPAFA  291 (382)
T ss_dssp             HHHHHHTTCCEEEEEECCCCSC
T ss_pred             HHHHHhcCCCeeEEEECCCCCC
Confidence            3      247999999999744

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.29  E-value=1.5e-11  Score=95.02  Aligned_cols=88  Identities=24%  Similarity=0.254  Sum_probs=67.7

Q ss_pred             CHHHHHHHHHhc-CCCCCCEEEEEcCCccHhHH-HHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           15 NQRVLDSIVRKS-SINPDDTVLEIGPGTGNLTL-KLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        15 ~~~~~~~i~~~~-~~~~~~~vLDiG~G~G~~t~-~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ++.....+++.+ ...++.+|||+|||+|.++. .+...+.+|+|+|+|+.+++.+++++...+  .+++++.+|+.+.+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~   84 (209)
T 2p8j_A            7 RQPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLP   84 (209)
T ss_dssp             SCTHHHHHHHHHHHSSSCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCC
T ss_pred             hhhhHHHHHHHHhccCCCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCC
Confidence            344444444433 23467899999999999854 445577899999999999999999987765  46899999999887


Q ss_pred             CC--CcceeecccC
Q 047897           93 FP--QFDLVVANIP  104 (232)
Q Consensus        93 ~~--~~D~Vi~n~p  104 (232)
                      .+  +||+|+++.+
T Consensus        85 ~~~~~fD~v~~~~~   98 (209)
T 2p8j_A           85 FKDESMSFVYSYGT   98 (209)
T ss_dssp             SCTTCEEEEEECSC
T ss_pred             CCCCceeEEEEcCh
Confidence            54  7999998643

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.28  E-value=1.5e-11  Score=97.44  Aligned_cols=91  Identities=20%  Similarity=0.189  Sum_probs=72.6

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .++.....+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...|+.++++++.+|+.+
T Consensus        54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34554444433344446779999999999999999983   689999999999999999999988886689999999976


Q ss_pred             C-C--------CCCcceeecccC
Q 047897           91 T-E--------FPQFDLVVANIP  104 (232)
Q Consensus        91 ~-~--------~~~~D~Vi~n~p  104 (232)
                      . +        .++||+|+++.+
T Consensus       134 ~l~~l~~~~~~~~~fD~I~~d~~  156 (237)
T 3c3y_A          134 ALDNLLQGQESEGSYDFGFVDAD  156 (237)
T ss_dssp             HHHHHHHSTTCTTCEEEEEECSC
T ss_pred             HHHHHHhccCCCCCcCEEEECCc
Confidence            4 1        357999998754

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.28  E-value=2.2e-11  Score=93.76  Aligned_cols=83  Identities=13%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      ..+..++..+.  ++ +|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....+.  ++.++.+|+.+.+.+  
T Consensus        19 ~~l~~~~~~~~--~~-~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~   93 (202)
T 2kw5_A           19 DFLVSVANQIP--QG-KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVAD   93 (202)
T ss_dssp             SSHHHHHHHSC--SS-EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTT
T ss_pred             HHHHHHHHhCC--CC-CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcC
Confidence            34555555553  55 999999999999999999888999999999999999999987764  699999999887653  


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      +||+|+++..
T Consensus        94 ~fD~v~~~~~  103 (202)
T 2kw5_A           94 AWEGIVSIFC  103 (202)
T ss_dssp             TCSEEEEECC
T ss_pred             CccEEEEEhh
Confidence            7999998754

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.28  E-value=2.3e-11  Score=99.11  Aligned_cols=79  Identities=19%  Similarity=0.301  Sum_probs=67.7

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeeccc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANI  103 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~  103 (232)
                      +.++.+|||+|||+|.++..+++.+ .+|+|+|+++.+++.+++++...+...+++++.+|+.+.+.   .+||+|+++.
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            4578899999999999999988855 49999999999999999999887765689999999998765   3799999875


Q ss_pred             Ccc
Q 047897          104 PYG  106 (232)
Q Consensus       104 p~~  106 (232)
                      ..+
T Consensus       142 ~l~  144 (298)
T 1ri5_A          142 SFH  144 (298)
T ss_dssp             CGG
T ss_pred             hhh
Confidence            543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.28  E-value=2.7e-11  Score=94.36  Aligned_cols=85  Identities=20%  Similarity=0.296  Sum_probs=65.1

Q ss_pred             HHHHHHHh--cCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--
Q 047897           18 VLDSIVRK--SSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--   91 (232)
Q Consensus        18 ~~~~i~~~--~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--   91 (232)
                      +...+...  +.+.++.+|||+|||+|.++..+++.  ..+|+|+|+|+.+++.+.+.....   .++.++.+|+.+.  
T Consensus        43 l~~~~~~~l~~~~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~  119 (210)
T 1nt2_A           43 LAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWK  119 (210)
T ss_dssp             HHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGG
T ss_pred             HHHHHHhhcccCCCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchh
Confidence            33444443  45678899999999999999999884  379999999999887777766543   4689999998763  


Q ss_pred             --CC-CCcceeecccCc
Q 047897           92 --EF-PQFDLVVANIPY  105 (232)
Q Consensus        92 --~~-~~~D~Vi~n~p~  105 (232)
                        +. ++||+|+++++.
T Consensus       120 ~~~~~~~fD~V~~~~~~  136 (210)
T 1nt2_A          120 YSGIVEKVDLIYQDIAQ  136 (210)
T ss_dssp             TTTTCCCEEEEEECCCS
T ss_pred             hcccccceeEEEEeccC
Confidence              22 479999998643

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.28  E-value=1.1e-11  Score=96.18  Aligned_cols=75  Identities=24%  Similarity=0.296  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-C--CCCcceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-E--FPQFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~--~~~~D~Vi~n  102 (232)
                      .++.+|||||||+|..+..+++.   +.+|+++|+|+.+++.|++++...++.++++++++|+.+. +  .+ ||+|+++
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~  133 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMD  133 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEE
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEc
Confidence            35679999999999999999984   6899999999999999999998887766799999999764 2  23 9999987


Q ss_pred             cC
Q 047897          103 IP  104 (232)
Q Consensus       103 ~p  104 (232)
                      .+
T Consensus       134 ~~  135 (210)
T 3c3p_A          134 CD  135 (210)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.27  E-value=2.2e-11  Score=97.76  Aligned_cols=69  Identities=20%  Similarity=0.267  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeeccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~  103 (232)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++++      .+++++.+|+.+++.+ +||+|+++.
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~fD~v~~~~  118 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSLGRRFSAVTCMF  118 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCCSCCEEEEEECT
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCccCCcCEEEEcC
Confidence            35689999999999999999998889999999999999999986      3689999999998754 899999875

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.27  E-value=1.9e-11  Score=96.62  Aligned_cols=81  Identities=17%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccc
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFD   97 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D   97 (232)
                      .+.+.+...++.+|||+|||+|.++..+++.+. +|+|+|+++.+++.++++...    .+++++.+|+.+.+.+  +||
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD  109 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFD  109 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEE
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCce
Confidence            456666666788999999999999999998776 999999999999999988754    3699999999887653  799


Q ss_pred             eeecccCc
Q 047897           98 LVVANIPY  105 (232)
Q Consensus        98 ~Vi~n~p~  105 (232)
                      +|+++..+
T Consensus       110 ~v~~~~~l  117 (243)
T 3bkw_A          110 LAYSSLAL  117 (243)
T ss_dssp             EEEEESCG
T ss_pred             EEEEeccc
Confidence            99987553

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.27  E-value=1.2e-11  Score=93.75  Aligned_cols=81  Identities=15%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-CCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-FPQ   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~   95 (232)
                      ...+...+  .+.++|||+|||+|.++..++.  +..+|+|+|+|+.|++.+++++...|...++++  +|..+.. .++
T Consensus        40 Y~~~~~~l--~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~  115 (200)
T 3fzg_A           40 YTYVFGNI--KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGT  115 (200)
T ss_dssp             HHHHHHHS--CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSE
T ss_pred             HHHHHhhc--CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCC
Confidence            33444445  4577999999999999999977  367999999999999999999999887546766  5655433 347


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      ||+|++.-
T Consensus       116 ~DvVLa~k  123 (200)
T 3fzg_A          116 YDVVFLLK  123 (200)
T ss_dssp             EEEEEEET
T ss_pred             cChhhHhh
Confidence            99999864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.27  E-value=2.4e-11  Score=95.38  Aligned_cols=78  Identities=24%  Similarity=0.440  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC----CccEEEEEcCCCCCCCC--Ccceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF----HDRLNVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~----~~~~~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++....++    ..+++++.+|+.+.+.+  +||+|+++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            4788999999999999999999888999999999999999999987665    23689999999988753  79999987


Q ss_pred             cCcc
Q 047897          103 IPYG  106 (232)
Q Consensus       103 ~p~~  106 (232)
                      ..++
T Consensus       109 ~~l~  112 (235)
T 3sm3_A          109 AFLT  112 (235)
T ss_dssp             SCGG
T ss_pred             chhh
Confidence            5543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.27  E-value=2.4e-11  Score=94.36  Aligned_cols=81  Identities=23%  Similarity=0.273  Sum_probs=66.4

Q ss_pred             HHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-CCCc
Q 047897           19 LDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-FPQF   96 (232)
Q Consensus        19 ~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-~~~~   96 (232)
                      .+.+++.+. ..++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++    .+. .+++++++|+.+.. .++|
T Consensus        34 ~~~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~~~~~~~  108 (218)
T 3ou2_A           34 APAALERLRAGNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDWTPDRQW  108 (218)
T ss_dssp             HHHHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSCCCSSCE
T ss_pred             HHHHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccCCCCCce
Confidence            344555544 5677899999999999999999988899999999999999988    333 57999999998873 2489


Q ss_pred             ceeecccC
Q 047897           97 DLVVANIP  104 (232)
Q Consensus        97 D~Vi~n~p  104 (232)
                      |+|+++..
T Consensus       109 D~v~~~~~  116 (218)
T 3ou2_A          109 DAVFFAHW  116 (218)
T ss_dssp             EEEEEESC
T ss_pred             eEEEEech
Confidence            99998654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.27  E-value=1.7e-11  Score=96.24  Aligned_cols=86  Identities=22%  Similarity=0.404  Sum_probs=70.1

Q ss_pred             HHHHHHHHH---hcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           16 QRVLDSIVR---KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        16 ~~~~~~i~~---~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +.+...++.   .+.+.++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.+++++...   ++++++.+|+.
T Consensus        56 ~~~~~~i~~~l~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~  132 (227)
T 1g8a_A           56 SKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDAT  132 (227)
T ss_dssp             CHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTT
T ss_pred             hhHHHHHHhhHHhcCCCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCC
Confidence            445566643   334678899999999999999999974   379999999999999999998764   57999999998


Q ss_pred             CCC----C-CCcceeecccC
Q 047897           90 KTE----F-PQFDLVVANIP  104 (232)
Q Consensus        90 ~~~----~-~~~D~Vi~n~p  104 (232)
                      +..    . ++||+|++++|
T Consensus       133 ~~~~~~~~~~~~D~v~~~~~  152 (227)
T 1g8a_A          133 KPEEYRALVPKVDVIFEDVA  152 (227)
T ss_dssp             CGGGGTTTCCCEEEEEECCC
T ss_pred             CcchhhcccCCceEEEECCC
Confidence            732    2 37999999987

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.27  E-value=2e-11  Score=97.22  Aligned_cols=85  Identities=20%  Similarity=0.241  Sum_probs=71.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ..+..+++.+...++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++++...   .+++++.+|+.+++.+ 
T Consensus        80 ~~~~~~l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~  156 (254)
T 1xtp_A           80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS
T ss_pred             HHHHHHHHhhcccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCC
Confidence            34466777777778899999999999999999885 567999999999999999998654   4799999999887654 


Q ss_pred             -CcceeecccC
Q 047897           95 -QFDLVVANIP  104 (232)
Q Consensus        95 -~~D~Vi~n~p  104 (232)
                       +||+|+++..
T Consensus       157 ~~fD~v~~~~~  167 (254)
T 1xtp_A          157 NTYDLIVIQWT  167 (254)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeEEEEEcch
Confidence             7999998654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.27  E-value=5.9e-12  Score=102.92  Aligned_cols=87  Identities=17%  Similarity=0.269  Sum_probs=65.5

Q ss_pred             HHHHHHhcCCC--CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCC-----------------
Q 047897           19 LDSIVRKSSIN--PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGF-----------------   77 (232)
Q Consensus        19 ~~~i~~~~~~~--~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~-----------------   77 (232)
                      .+.+++.+...  ++.+|||||||+|.++..++..  +.+|+|+|+|+.+++.|++++...+.                 
T Consensus        33 ~~~~l~~l~~~~~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (292)
T 3g07_A           33 EDGRLRVLKPEWFRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAE  112 (292)
T ss_dssp             -CGGGGTSCGGGTTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------
T ss_pred             hhHHHHhhhhhhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccc
Confidence            33344444332  6789999999999999999984  68999999999999999998765432                 


Q ss_pred             ----------------------------------------CccEEEEEcCCCCCC-------CCCcceeecccCc
Q 047897           78 ----------------------------------------HDRLNVISKDALKTE-------FPQFDLVVANIPY  105 (232)
Q Consensus        78 ----------------------------------------~~~~~~~~~D~~~~~-------~~~~D~Vi~n~p~  105 (232)
                                                              +.+++++++|+...+       .++||+|+++-..
T Consensus       113 ~~~~~~~~~~~~~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl  187 (292)
T 3g07_A          113 GEEGTTTVRKRSCFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLT  187 (292)
T ss_dssp             -----------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCH
T ss_pred             cccccccccccccccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHH
Confidence                                                    148999999998654       3489999986543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.26  E-value=8.7e-12  Score=108.40  Aligned_cols=87  Identities=15%  Similarity=0.197  Sum_probs=74.3

Q ss_pred             HHHHhcCCC--CCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897           21 SIVRKSSIN--PDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--   93 (232)
Q Consensus        21 ~i~~~~~~~--~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--   93 (232)
                      .+...+++.  ++++|||+|||+|..|..+++.   ..+|+|+|+|+.+++.+++++...|+ .++.++++|+.+++.  
T Consensus       106 l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~-~nv~~~~~D~~~~~~~~  184 (479)
T 2frx_A          106 LPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGI-SNVALTHFDGRVFGAAV  184 (479)
T ss_dssp             HHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCCSTTHHHHS
T ss_pred             HHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCCHHHhhhhc
Confidence            344556666  8999999999999999999983   47999999999999999999999887 479999999988642  


Q ss_pred             -CCcceeecccCcccc
Q 047897           94 -PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 -~~~D~Vi~n~p~~~~  108 (232)
                       ..||.|++|+|+...
T Consensus       185 ~~~fD~Il~D~PcSg~  200 (479)
T 2frx_A          185 PEMFDAILLDAPCSGE  200 (479)
T ss_dssp             TTCEEEEEEECCCCCG
T ss_pred             cccCCEEEECCCcCCc
Confidence             479999999998643

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.26  E-value=2.4e-11  Score=96.08  Aligned_cols=83  Identities=24%  Similarity=0.327  Sum_probs=69.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      .+++.+.+.+.  ++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++...    .+++++.+|+.+.+.+  
T Consensus        42 ~~~~~l~~~~~--~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~  115 (242)
T 3l8d_A           42 TIIPFFEQYVK--KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEG----PDLSFIKGDLSSLPFENE  115 (242)
T ss_dssp             THHHHHHHHSC--TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCB----TTEEEEECBTTBCSSCTT
T ss_pred             HHHHHHHHHcC--CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhccc----CCceEEEcchhcCCCCCC
Confidence            45556655553  778999999999999999999888999999999999999988522    5799999999988753  


Q ss_pred             CcceeecccCc
Q 047897           95 QFDLVVANIPY  105 (232)
Q Consensus        95 ~~D~Vi~n~p~  105 (232)
                      +||+|+++..+
T Consensus       116 ~fD~v~~~~~l  126 (242)
T 3l8d_A          116 QFEAIMAINSL  126 (242)
T ss_dssp             CEEEEEEESCT
T ss_pred             CccEEEEcChH
Confidence            89999986543

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=99.26  E-value=3.5e-12  Score=102.13  Aligned_cols=89  Identities=20%  Similarity=0.367  Sum_probs=70.8

Q ss_pred             HHHHHhcCCCCC--CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-------C-CCccEEEEEcCCC
Q 047897           20 DSIVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-------G-FHDRLNVISKDAL   89 (232)
Q Consensus        20 ~~i~~~~~~~~~--~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-------~-~~~~~~~~~~D~~   89 (232)
                      +.+.+.+.+.++  .+|||+|||+|..+..++..+++|+++|+++.+++.+++++...       + +..+++++++|+.
T Consensus        76 e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~  155 (258)
T 2oyr_A           76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSL  155 (258)
T ss_dssp             SHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHH
T ss_pred             HHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHH
Confidence            345566666677  89999999999999999998889999999999888877776432       1 2247999999997


Q ss_pred             CC-C-C-CCcceeecccCcccc
Q 047897           90 KT-E-F-PQFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~-~-~-~~~D~Vi~n~p~~~~  108 (232)
                      ++ + . ++||+|+.|+||...
T Consensus       156 ~~L~~~~~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          156 TALTDITPRPQVVYLDPMFPHK  177 (258)
T ss_dssp             HHSTTCSSCCSEEEECCCCCCC
T ss_pred             HHHHhCcccCCEEEEcCCCCCc
Confidence            74 2 1 379999999999754

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.26  E-value=3.6e-11  Score=95.04  Aligned_cols=83  Identities=23%  Similarity=0.414  Sum_probs=70.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ..+.+.+.+.+.  ++.+|||+|||+|.++..+++. .+|+|+|+++.+++.++++....+  .+++++.+|+.+.+.+ 
T Consensus        21 ~~~~~~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~   95 (243)
T 3d2l_A           21 PEWVAWVLEQVE--PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELPE   95 (243)
T ss_dssp             HHHHHHHHHHSC--TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCSS
T ss_pred             HHHHHHHHHHcC--CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCCC
Confidence            456667777664  5689999999999999999988 899999999999999999998765  4699999999887654 


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      +||+|+++.
T Consensus        96 ~fD~v~~~~  104 (243)
T 3d2l_A           96 PVDAITILC  104 (243)
T ss_dssp             CEEEEEECT
T ss_pred             CcCEEEEeC
Confidence            799999853

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.26  E-value=1.3e-11  Score=97.60  Aligned_cols=91  Identities=21%  Similarity=0.246  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .++...+.+...+...++.+|||||||+|..+..+++.   +.+|+++|+++.+++.|++++...++.++++++.+|+.+
T Consensus        56 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~  135 (232)
T 3cbg_A           56 ISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALA  135 (232)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            44555544444444446779999999999999999983   579999999999999999999888876689999999865


Q ss_pred             C----CC----CCcceeecccC
Q 047897           91 T----EF----PQFDLVVANIP  104 (232)
Q Consensus        91 ~----~~----~~~D~Vi~n~p  104 (232)
                      .    +.    ++||+|+++.+
T Consensus       136 ~l~~l~~~~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          136 TLEQLTQGKPLPEFDLIFIDAD  157 (232)
T ss_dssp             HHHHHHTSSSCCCEEEEEECSC
T ss_pred             HHHHHHhcCCCCCcCEEEECCC
Confidence            2    11    57999998765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.26  E-value=5.3e-11  Score=98.80  Aligned_cols=91  Identities=15%  Similarity=0.263  Sum_probs=74.8

Q ss_pred             HHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           17 RVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        17 ~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ..+..+++.++.  .++.+|||+|||+|.++..+++.  +.+++++|++ .+++.+++++...++.++++++.+|+.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  228 (335)
T 2r3s_A          150 NPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD  228 (335)
T ss_dssp             HHHHHHHHHHTC--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC
T ss_pred             hhHHHHHHhcccccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC
Confidence            344566677776  77889999999999999999984  6799999999 999999999988877668999999998866


Q ss_pred             CC-Ccceeecc-cCcccc
Q 047897           93 FP-QFDLVVAN-IPYGIS  108 (232)
Q Consensus        93 ~~-~~D~Vi~n-~p~~~~  108 (232)
                      .+ .||+|+++ +.+++.
T Consensus       229 ~~~~~D~v~~~~~l~~~~  246 (335)
T 2r3s_A          229 YGNDYDLVLLPNFLHHFD  246 (335)
T ss_dssp             CCSCEEEEEEESCGGGSC
T ss_pred             CCCCCcEEEEcchhccCC
Confidence            55 59999984 444443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.26  E-value=2.7e-11  Score=95.19  Aligned_cols=79  Identities=18%  Similarity=0.262  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC-CCCC--
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL-KTEF--   93 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~-~~~~--   93 (232)
                      .+++.++.... .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++.      ++++++++|+. .++.  
T Consensus        36 ~l~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~  108 (226)
T 3m33_A           36 LTFDLWLSRLL-TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANA------PHADVYEWNGKGELPAGL  108 (226)
T ss_dssp             HHHHHHHHHHC-CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHC------TTSEEEECCSCSSCCTTC
T ss_pred             HHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhC------CCceEEEcchhhccCCcC
Confidence            45555554332 57789999999999999999998899999999999999999982      57999999994 4553  


Q ss_pred             -CCcceeecc
Q 047897           94 -PQFDLVVAN  102 (232)
Q Consensus        94 -~~~D~Vi~n  102 (232)
                       .+||+|+++
T Consensus       109 ~~~fD~v~~~  118 (226)
T 3m33_A          109 GAPFGLIVSR  118 (226)
T ss_dssp             CCCEEEEEEE
T ss_pred             CCCEEEEEeC
Confidence             379999987

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.25  E-value=2.7e-11  Score=95.90  Aligned_cols=76  Identities=20%  Similarity=0.337  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh------cCCCccEEEEEcCCCC-CC----CCC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD------SGFHDRLNVISKDALK-TE----FPQ   95 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~~~~~~~D~~~-~~----~~~   95 (232)
                      .++.+|||||||+|.++..+++.  ...|+|+|+++.+++.|++++..      .+. .|+.++++|+.+ ++    ..+
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~  123 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQ  123 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTC
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcC
Confidence            45678999999999999999883  57999999999999999988753      344 589999999987 33    348


Q ss_pred             cceeecccCc
Q 047897           96 FDLVVANIPY  105 (232)
Q Consensus        96 ~D~Vi~n~p~  105 (232)
                      +|.|+++.|-
T Consensus       124 ~D~v~~~~~d  133 (235)
T 3ckk_A          124 LTKMFFLFPD  133 (235)
T ss_dssp             EEEEEEESCC
T ss_pred             eeEEEEeCCC
Confidence            9999887653

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=2.1e-11  Score=110.61  Aligned_cols=96  Identities=18%  Similarity=0.242  Sum_probs=76.0

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDAL   89 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~   89 (232)
                      ++.|....+.++...  .++.+|||+|||+|.++..++..+ .+|+++|+|+.+++.+++|+..+++. ++++++++|+.
T Consensus       523 ~f~d~r~~r~~l~~~--~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~  600 (703)
T 3v97_A          523 LFLDHRIARRMLGQM--SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCL  600 (703)
T ss_dssp             CCGGGHHHHHHHHHH--CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHH
T ss_pred             CcccHHHHHHHHHHh--cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHH
Confidence            333445555555443  268899999999999999999855 46999999999999999999999885 58999999998


Q ss_pred             CC---CCCCcceeecccCcccch
Q 047897           90 KT---EFPQFDLVVANIPYGISS  109 (232)
Q Consensus        90 ~~---~~~~~D~Vi~n~p~~~~~  109 (232)
                      ++   ...+||+|++|+|+...+
T Consensus       601 ~~l~~~~~~fD~Ii~DPP~f~~~  623 (703)
T 3v97_A          601 AWLREANEQFDLIFIDPPTFSNS  623 (703)
T ss_dssp             HHHHHCCCCEEEEEECCCSBC--
T ss_pred             HHHHhcCCCccEEEECCccccCC
Confidence            74   224799999999975543

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.25  E-value=1.4e-11  Score=94.87  Aligned_cols=79  Identities=16%  Similarity=0.281  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--   93 (232)
                      ..++..+....    +.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++.      ++++++.+|+.+++.  
T Consensus        31 ~~~l~~~~~~~----~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~  100 (203)
T 3h2b_A           31 RVLIEPWATGV----DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSP  100 (203)
T ss_dssp             HHHHHHHHHHC----CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSC
T ss_pred             HHHHHHHhccC----CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCC
Confidence            34455544432    678999999999999999998889999999999999999884      469999999998765  


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      .+||+|+++..
T Consensus       101 ~~fD~v~~~~~  111 (203)
T 3h2b_A          101 KRWAGLLAWYS  111 (203)
T ss_dssp             CCEEEEEEESS
T ss_pred             CCeEEEEehhh
Confidence            37999998654

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.24  E-value=1.8e-11  Score=96.81  Aligned_cols=80  Identities=20%  Similarity=0.280  Sum_probs=65.2

Q ss_pred             HHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcc
Q 047897           20 DSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFD   97 (232)
Q Consensus        20 ~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D   97 (232)
                      +.+++.+. ..++.+|||||||+|.++..+++.+.+|+|+|+++.+++.++++...     +++++++|+.+... .+||
T Consensus        31 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~~~~~~fD  105 (250)
T 2p7i_A           31 PFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDAQLPRRYD  105 (250)
T ss_dssp             HHHHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGCCCSSCEE
T ss_pred             HHHHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHcCcCCccc
Confidence            44444443 34677899999999999999999888999999999999999998742     69999999988743 3799


Q ss_pred             eeecccC
Q 047897           98 LVVANIP  104 (232)
Q Consensus        98 ~Vi~n~p  104 (232)
                      +|+++-.
T Consensus       106 ~v~~~~~  112 (250)
T 2p7i_A          106 NIVLTHV  112 (250)
T ss_dssp             EEEEESC
T ss_pred             EEEEhhH
Confidence            9998643

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.24  E-value=1.1e-10  Score=98.05  Aligned_cols=88  Identities=18%  Similarity=0.404  Sum_probs=76.2

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      ...+.+++.++..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++++...++.++++++.+|+.+.+.+
T Consensus       177 ~~~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  255 (359)
T 1x19_A          177 FAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP  255 (359)
T ss_dssp             HHHHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCC
T ss_pred             hhHHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCC
Confidence            45667778888888899999999999999999983  679999999 999999999998887766799999999988777


Q ss_pred             CcceeecccCc
Q 047897           95 QFDLVVANIPY  105 (232)
Q Consensus        95 ~~D~Vi~n~p~  105 (232)
                      ..|+|+++..+
T Consensus       256 ~~D~v~~~~vl  266 (359)
T 1x19_A          256 EADAVLFCRIL  266 (359)
T ss_dssp             CCSEEEEESCG
T ss_pred             CCCEEEEechh
Confidence            67999886554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.24  E-value=3.4e-11  Score=95.90  Aligned_cols=77  Identities=23%  Similarity=0.354  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--------CCCccEEEEEcCCCC-CC----C
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--------GFHDRLNVISKDALK-TE----F   93 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--------~~~~~~~~~~~D~~~-~~----~   93 (232)
                      .++.+|||||||+|.++..++..  ..+|+|+|+++.+++.+++++...        ++ ++++++.+|+.+ ++    .
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~  126 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEK  126 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhccc
Confidence            36779999999999999999984  468999999999999999998765        66 589999999987 33    3


Q ss_pred             CCcceeecccCcc
Q 047897           94 PQFDLVVANIPYG  106 (232)
Q Consensus        94 ~~~D~Vi~n~p~~  106 (232)
                      ..+|.|+.+.|..
T Consensus       127 ~~~d~v~~~~p~p  139 (246)
T 2vdv_E          127 GQLSKMFFCFPDP  139 (246)
T ss_dssp             TCEEEEEEESCCC
T ss_pred             cccCEEEEECCCc
Confidence            3788888765543

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.24  E-value=3.4e-11  Score=104.14  Aligned_cols=91  Identities=22%  Similarity=0.259  Sum_probs=77.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      .....+...+++.++++|||+|||+|..|..+++  .+ .+|+|+|+++.+++.+++++...|+ .+++++++|+.+.+ 
T Consensus       246 ~~s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~  324 (450)
T 2yxl_A          246 EASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPE  324 (450)
T ss_dssp             HHHHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSS
T ss_pred             chhHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcch
Confidence            3444455667788899999999999999999998  33 7999999999999999999998887 47999999998875 


Q ss_pred             -C--CCcceeecccCcccc
Q 047897           93 -F--PQFDLVVANIPYGIS  108 (232)
Q Consensus        93 -~--~~~D~Vi~n~p~~~~  108 (232)
                       +  ..||.|++|+|+...
T Consensus       325 ~~~~~~fD~Vl~D~Pcsg~  343 (450)
T 2yxl_A          325 IIGEEVADKVLLDAPCTSS  343 (450)
T ss_dssp             SSCSSCEEEEEEECCCCCG
T ss_pred             hhccCCCCEEEEcCCCCCC
Confidence             3  369999999998654

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=99.24  E-value=2.4e-11  Score=109.71  Aligned_cols=102  Identities=19%  Similarity=0.245  Sum_probs=78.1

Q ss_pred             ccCCCcccccCCHHHHHHHHHh----cC--CCCCCEEEEEcCCccHhHHHHHhcC-----CeEEEEEcCHHHHHHH--HH
Q 047897            4 FHKSKGQHILTNQRVLDSIVRK----SS--INPDDTVLEIGPGTGNLTLKLLEVS-----KKVHAIEIDERMVEIL--NR   70 (232)
Q Consensus         4 ~~k~~gq~fl~~~~~~~~i~~~----~~--~~~~~~vLDiG~G~G~~t~~l~~~~-----~~v~~vD~~~~~~~~a--~~   70 (232)
                      .++..|| |.+++.+++.|++.    ++  ..++.+|||+|||+|.++..+++..     .+++|+|+|+.+++.|  +.
T Consensus       290 ~Rkk~Gq-FYTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~Rl  368 (878)
T 3s1s_A          290 GRGHEGV-VPTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRL  368 (878)
T ss_dssp             SCCCCBS-SSCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHH
T ss_pred             hCCcCce-EcCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHH
Confidence            4567787 78889999999887    22  2357899999999999999988732     4799999999999999  66


Q ss_pred             HHhh----cCCCccEEEEEcCCCCCC---CCCcceeecccCccc
Q 047897           71 RAAD----SGFHDRLNVISKDALKTE---FPQFDLVVANIPYGI  107 (232)
Q Consensus        71 ~~~~----~~~~~~~~~~~~D~~~~~---~~~~D~Vi~n~p~~~  107 (232)
                      ++..    .+. ....+..+|+.+..   ...||+|++||||..
T Consensus       369 NL~lN~LlhGi-~~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg~  411 (878)
T 3s1s_A          369 GLLFPQLVSSN-NAPTITGEDVCSLNPEDFANVSVVVMNPPYVS  411 (878)
T ss_dssp             HTTSTTTCBTT-BCCEEECCCGGGCCGGGGTTEEEEEECCBCCS
T ss_pred             HHHHhhhhcCC-CcceEEecchhcccccccCCCCEEEECCCccc
Confidence            6544    233 23456677777643   347999999999954

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.24  E-value=3.4e-11  Score=108.98  Aligned_cols=89  Identities=11%  Similarity=0.174  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhc------CCCccEEEEEcC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADS------GFHDRLNVISKD   87 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~D   87 (232)
                      ..++.+++.+...++.+|||+|||+|.++..+++.+   .+|+|+|+|+.+++.|++++...      +. .+++++++|
T Consensus       708 qRle~LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGD  786 (950)
T 3htx_A          708 QRVEYALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGS  786 (950)
T ss_dssp             HHHHHHHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESC
T ss_pred             HHHHHHHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECc
Confidence            345566666666688899999999999999999965   79999999999999999976532      44 489999999


Q ss_pred             CCCCCCC--CcceeecccCcc
Q 047897           88 ALKTEFP--QFDLVVANIPYG  106 (232)
Q Consensus        88 ~~~~~~~--~~D~Vi~n~p~~  106 (232)
                      +.+++.+  .||+|+++-.++
T Consensus       787 a~dLp~~d~sFDlVV~~eVLe  807 (950)
T 3htx_A          787 ILEFDSRLHDVDIGTCLEVIE  807 (950)
T ss_dssp             TTSCCTTSCSCCEEEEESCGG
T ss_pred             hHhCCcccCCeeEEEEeCchh
Confidence            9998764  899999875544

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.23  E-value=2.6e-11  Score=99.85  Aligned_cols=93  Identities=24%  Similarity=0.276  Sum_probs=71.8

Q ss_pred             HHHHHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcC------CCccEEEEEc
Q 047897           16 QRVLDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSG------FHDRLNVISK   86 (232)
Q Consensus        16 ~~~~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~------~~~~~~~~~~   86 (232)
                      ..+++.+++.+..  .++.+|||+|||+|.++..+++ ...+++|+|+++.+++.++++....+      ...+++++++
T Consensus        18 ~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~   97 (313)
T 3bgv_A           18 SVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITA   97 (313)
T ss_dssp             HHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEEC
T ss_pred             HHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEe
Confidence            3555666655432  3678999999999999999987 46799999999999999999986541      1147999999


Q ss_pred             CCCCCC----C----CCcceeecccCcccc
Q 047897           87 DALKTE----F----PQFDLVVANIPYGIS  108 (232)
Q Consensus        87 D~~~~~----~----~~~D~Vi~n~p~~~~  108 (232)
                      |+.+.+    +    .+||+|+++...++.
T Consensus        98 D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A           98 DSSKELLIDKFRDPQMCFDICSCQFVCHYS  127 (313)
T ss_dssp             CTTTSCSTTTCSSTTCCEEEEEEETCGGGG
T ss_pred             cccccchhhhcccCCCCEEEEEEecchhhc
Confidence            998875    2    279999998877654

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.23  E-value=5e-11  Score=90.75  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=63.8

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Cccee
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLV   99 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~V   99 (232)
                      +++.+ +.++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.      .+++++.+|+.+.+.+  +||+|
T Consensus        39 ~l~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i  111 (195)
T 3cgg_A           39 LIDAM-APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLI  111 (195)
T ss_dssp             HHHHH-SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEE
T ss_pred             HHHHh-ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEE
Confidence            44443 457889999999999999999998889999999999999999886      3588999999987653  79999


Q ss_pred             eccc
Q 047897          100 VANI  103 (232)
Q Consensus       100 i~n~  103 (232)
                      +++.
T Consensus       112 ~~~~  115 (195)
T 3cgg_A          112 VSAG  115 (195)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9873

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.23  E-value=6.6e-12  Score=108.21  Aligned_cols=89  Identities=17%  Similarity=0.184  Sum_probs=75.7

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---   92 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---   92 (232)
                      ...+...+++.++++|||+|||+|..|..+++.   ..+|+|+|+|+.+++.+++++...|+ .++.++++|+.++.   
T Consensus        94 s~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~-~nv~v~~~Da~~l~~~~  172 (456)
T 3m4x_A           94 AMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGV-SNAIVTNHAPAELVPHF  172 (456)
T ss_dssp             THHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTC-SSEEEECCCHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhhhc
Confidence            344455667788999999999999999999872   47999999999999999999999998 47999999998764   


Q ss_pred             CCCcceeecccCcccc
Q 047897           93 FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 ~~~~D~Vi~n~p~~~~  108 (232)
                      ...||.|++|+|+...
T Consensus       173 ~~~FD~Il~DaPCSg~  188 (456)
T 3m4x_A          173 SGFFDRIVVDAPCSGE  188 (456)
T ss_dssp             TTCEEEEEEECCCCCG
T ss_pred             cccCCEEEECCCCCCc
Confidence            2479999999997543

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.23  E-value=5.6e-11  Score=96.59  Aligned_cols=92  Identities=15%  Similarity=0.237  Sum_probs=66.7

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEc-CHHHHHHHHHHH-----hhcCCC----ccEEEEE
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEI-DERMVEILNRRA-----ADSGFH----DRLNVIS   85 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~-~~~~~~~a~~~~-----~~~~~~----~~~~~~~   85 (232)
                      .+++.+.+.....++.+|||+|||+|.++..++..+. +|+|+|+ |+.+++.+++++     ...++.    ++++++.
T Consensus        66 ~l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~  145 (281)
T 3bzb_A           66 ALADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVP  145 (281)
T ss_dssp             HHHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEE
T ss_pred             HHHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEE
Confidence            3555555555445788999999999999999988655 9999999 899999999999     544442    3688886


Q ss_pred             cCCCCC--------CCCCcceeec-ccCcccc
Q 047897           86 KDALKT--------EFPQFDLVVA-NIPYGIS  108 (232)
Q Consensus        86 ~D~~~~--------~~~~~D~Vi~-n~p~~~~  108 (232)
                      .|..+.        +..+||+|++ +++|+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~~  177 (281)
T 3bzb_A          146 YRWGDSPDSLQRCTGLQRFQVVLLADLLSFHQ  177 (281)
T ss_dssp             CCTTSCTHHHHHHHSCSSBSEEEEESCCSCGG
T ss_pred             ecCCCccHHHHhhccCCCCCEEEEeCcccChH
Confidence            665442        2357999887 7777643

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.23  E-value=7.7e-12  Score=107.96  Aligned_cols=89  Identities=19%  Similarity=0.159  Sum_probs=75.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      ....+...+++.++.+|||+|||+|..|..+++.   ..+|+|+|+|+.+++.+++++...|+.  +.++++|+.+++  
T Consensus        89 ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~  166 (464)
T 3m6w_A           89 SAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEA  166 (464)
T ss_dssp             TTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHH
T ss_pred             HHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhh
Confidence            3344556677788999999999999999999972   369999999999999999999999984  999999998765  


Q ss_pred             -CCCcceeecccCcccc
Q 047897           93 -FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 -~~~~D~Vi~n~p~~~~  108 (232)
                       ...||.|++|+|+...
T Consensus       167 ~~~~FD~Il~D~PcSg~  183 (464)
T 3m6w_A          167 FGTYFHRVLLDAPCSGE  183 (464)
T ss_dssp             HCSCEEEEEEECCCCCG
T ss_pred             ccccCCEEEECCCcCCc
Confidence             2479999999998543

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.22  E-value=6.1e-12  Score=94.25  Aligned_cols=78  Identities=15%  Similarity=0.214  Sum_probs=64.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeec
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA  101 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~  101 (232)
                      +++.+++.++.+|||+|||+|.++..+++...+++|+|+++.+++.++++.      ++++++.+| ...+..+||+|++
T Consensus         9 ~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------~~v~~~~~d-~~~~~~~~D~v~~   81 (170)
T 3i9f_A            9 YLPNIFEGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKF------DSVITLSDP-KEIPDNSVDFILF   81 (170)
T ss_dssp             THHHHHSSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHC------TTSEEESSG-GGSCTTCEEEEEE
T ss_pred             HHHhcCcCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhC------CCcEEEeCC-CCCCCCceEEEEE
Confidence            344455668889999999999999999986669999999999999999982      579999999 5555568999998


Q ss_pred             ccCcc
Q 047897          102 NIPYG  106 (232)
Q Consensus       102 n~p~~  106 (232)
                      +..++
T Consensus        82 ~~~l~   86 (170)
T 3i9f_A           82 ANSFH   86 (170)
T ss_dssp             ESCST
T ss_pred             ccchh
Confidence            75543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.22  E-value=1.5e-11  Score=97.44  Aligned_cols=84  Identities=17%  Similarity=0.172  Sum_probs=67.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----   91 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----   91 (232)
                      .+.+.+.+.+. .+|.+|||||||+|..+..+++. +.+|++||+|+.+++.|+++....+  .++.++.+|+.+.    
T Consensus        48 ~~m~~~a~~~~-~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~  124 (236)
T 3orh_A           48 PYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTL  124 (236)
T ss_dssp             HHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGS
T ss_pred             HHHHHHHHhhc-cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccc
Confidence            34444554443 57889999999999999999884 5789999999999999999998776  4689999998653    


Q ss_pred             CCCCcceeeccc
Q 047897           92 EFPQFDLVVANI  103 (232)
Q Consensus        92 ~~~~~D~Vi~n~  103 (232)
                      +..+||.|+.+.
T Consensus       125 ~~~~FD~i~~D~  136 (236)
T 3orh_A          125 PDGHFDGILYDT  136 (236)
T ss_dssp             CTTCEEEEEECC
T ss_pred             cccCCceEEEee
Confidence            334799998764

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.21  E-value=1.4e-11  Score=100.33  Aligned_cols=87  Identities=16%  Similarity=0.178  Sum_probs=70.1

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC---ccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH---DRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~~   92 (232)
                      ..+.+.+.+.+...++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++....+..   .++.+..+|+.+++
T Consensus        43 ~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~  122 (293)
T 3thr_A           43 AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLD  122 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHH
T ss_pred             HHHHHHHHHHhcccCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCc
Confidence            445556666665567889999999999999999998889999999999999999987433221   46889999998865


Q ss_pred             -----CCCcceeecc
Q 047897           93 -----FPQFDLVVAN  102 (232)
Q Consensus        93 -----~~~~D~Vi~n  102 (232)
                           ..+||+|+++
T Consensus       123 ~~~~~~~~fD~V~~~  137 (293)
T 3thr_A          123 KDVPAGDGFDAVICL  137 (293)
T ss_dssp             HHSCCTTCEEEEEEC
T ss_pred             cccccCCCeEEEEEc
Confidence                 3489999985

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.21  E-value=1.6e-11  Score=96.64  Aligned_cols=77  Identities=19%  Similarity=0.298  Sum_probs=62.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcC-HHHHHHH---HHHHhhcCCCccEEEEEcCCCCCCCC---Cccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEID-ERMVEIL---NRRAADSGFHDRLNVISKDALKTEFP---QFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~-~~~~~~a---~~~~~~~~~~~~~~~~~~D~~~~~~~---~~D~V   99 (232)
                      .++.+|||||||+|.++..+++  .+.+|+|+|+| +.|++.|   +++....++ .++.++++|+.+++..   .+|.|
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLPFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCCGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhhhhccCeEEEE
Confidence            5778999999999999999984  67899999999 7777666   888777777 5899999999998643   34566


Q ss_pred             ecccCcc
Q 047897          100 VANIPYG  106 (232)
Q Consensus       100 i~n~p~~  106 (232)
                      .+|+|+.
T Consensus       102 ~~~~~~~  108 (225)
T 3p2e_A          102 SILFPWG  108 (225)
T ss_dssp             EEESCCH
T ss_pred             EEeCCCc
Confidence            6677643

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.21  E-value=3.6e-11  Score=95.26  Aligned_cols=74  Identities=18%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIP  104 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p  104 (232)
                      ++.+|||||||+|.++..+++. ..+|+|+|+++.+++.+++++...+. .+++++.+|+.+++.+  +||+|+++..
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCC-ceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence            5789999999999999999885 56999999999999999999876542 5799999999887654  6999998744

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.21  E-value=4.4e-11  Score=106.39  Aligned_cols=74  Identities=16%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeecccC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANIP  104 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~p  104 (232)
                      .+.+|||||||.|.++..|++.+..|+|||.++.+++.|+..+...|. -++++.++|++++    ...+||+|++.-.
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            456999999999999999999999999999999999999999987764 3699999999876    2348999998643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.21  E-value=6.9e-11  Score=93.21  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=64.9

Q ss_pred             hcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCc
Q 047897           25 KSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQF   96 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~   96 (232)
                      .+.+.++.+|||+|||+|.++..+++.   ..+|+|+|+++.+++.+.+++...   .+++++.+|+.+..     .++|
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~  148 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMV  148 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCE
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcE
Confidence            455678899999999999999999984   379999999999888888887664   57999999998732     2479


Q ss_pred             ceeecccC
Q 047897           97 DLVVANIP  104 (232)
Q Consensus        97 D~Vi~n~p  104 (232)
                      |+|++++|
T Consensus       149 D~V~~~~~  156 (233)
T 2ipx_A          149 DVIFADVA  156 (233)
T ss_dssp             EEEEECCC
T ss_pred             EEEEEcCC
Confidence            99999987

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.19  E-value=5.6e-11  Score=92.12  Aligned_cols=80  Identities=19%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-C
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-Q   95 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~   95 (232)
                      ..+..++..+  .++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++       ++.++.+|+.+++.. +
T Consensus        32 ~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~~~~~  102 (211)
T 3e23_A           32 ATLTKFLGEL--PAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLDAIDA  102 (211)
T ss_dssp             HHHHHHHTTS--CTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCCCCSC
T ss_pred             HHHHHHHHhc--CCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCCCCCc
Confidence            4455555544  46789999999999999999998889999999999999999987       366788999888743 7


Q ss_pred             cceeecccCc
Q 047897           96 FDLVVANIPY  105 (232)
Q Consensus        96 ~D~Vi~n~p~  105 (232)
                      ||+|+++..+
T Consensus       103 fD~v~~~~~l  112 (211)
T 3e23_A          103 YDAVWAHACL  112 (211)
T ss_dssp             EEEEEECSCG
T ss_pred             EEEEEecCch
Confidence            9999987543

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.19  E-value=4.6e-11  Score=102.76  Aligned_cols=93  Identities=19%  Similarity=0.299  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .+......+...+++.++.+|||+|||+|..|..+++.  ..+|+|+|+++.+++.+++++...|.  +++++++|+.+.
T Consensus       230 ~qd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~  307 (429)
T 1sqg_A          230 VQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYP  307 (429)
T ss_dssp             ECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCT
T ss_pred             eeCHHHHHHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhc
Confidence            34556666677778889999999999999999999983  37999999999999999999998886  378999999887


Q ss_pred             C--C--CCcceeecccCcccc
Q 047897           92 E--F--PQFDLVVANIPYGIS  108 (232)
Q Consensus        92 ~--~--~~~D~Vi~n~p~~~~  108 (232)
                      +  +  ..||.|++|+|+...
T Consensus       308 ~~~~~~~~fD~Vl~D~Pcsg~  328 (429)
T 1sqg_A          308 SQWCGEQQFDRILLDAPCSAT  328 (429)
T ss_dssp             HHHHTTCCEEEEEEECCCCCG
T ss_pred             hhhcccCCCCEEEEeCCCCcc
Confidence            5  2  479999999998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.19  E-value=3.1e-11  Score=94.13  Aligned_cols=82  Identities=23%  Similarity=0.294  Sum_probs=63.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHH----hhcCCCccEEEEEcCCCCCCCC-
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRA----ADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~----~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      .++.+.+.++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.+.+++    ...+. ++++++++|+.+++.+ 
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~   97 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLS   97 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCC
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCC
Confidence            344555678889999999999999999995  789999999999888643333    33454 4899999999998764 


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.|+..++
T Consensus        98 ~~d~v~~~~~  107 (218)
T 3mq2_A           98 GVGELHVLMP  107 (218)
T ss_dssp             CEEEEEEESC
T ss_pred             CCCEEEEEcc
Confidence            2277775555

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.17  E-value=2.6e-11  Score=96.25  Aligned_cols=77  Identities=16%  Similarity=0.205  Sum_probs=64.3

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-------Ccceee
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-------QFDLVV  100 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-------~~D~Vi  100 (232)
                      +.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.+++++..    .+++++++|+.+.+..       .||+|+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTA----ANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCC----TTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcc----cCceEEECcccccccccccccccCccEEE
Confidence            45778999999999999999999777999999999999999998732    4799999999886543       389999


Q ss_pred             cccCcccc
Q 047897          101 ANIPYGIS  108 (232)
Q Consensus       101 ~n~p~~~~  108 (232)
                      ++..++..
T Consensus       130 ~~~~~~~~  137 (245)
T 3ggd_A          130 MRTGFHHI  137 (245)
T ss_dssp             EESSSTTS
T ss_pred             EcchhhcC
Confidence            87654433

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.17  E-value=4.5e-11  Score=94.69  Aligned_cols=83  Identities=13%  Similarity=0.083  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +.....+.+.+...++.+|||||||+|..+..+++.      +.+|+|+|+++.+++.|+.    .  .++++++++|+.
T Consensus        67 p~~~~~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~--~~~v~~~~gD~~  140 (236)
T 2bm8_A           67 PDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----D--MENITLHQGDCS  140 (236)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----G--CTTEEEEECCSS
T ss_pred             HHHHHHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----c--CCceEEEECcch
Confidence            666666666555456789999999999999999875      6899999999999988871    1  257999999998


Q ss_pred             CC---CC--C-CcceeecccC
Q 047897           90 KT---EF--P-QFDLVVANIP  104 (232)
Q Consensus        90 ~~---~~--~-~~D~Vi~n~p  104 (232)
                      +.   +.  . +||+|+++..
T Consensus       141 ~~~~l~~~~~~~fD~I~~d~~  161 (236)
T 2bm8_A          141 DLTTFEHLREMAHPLIFIDNA  161 (236)
T ss_dssp             CSGGGGGGSSSCSSEEEEESS
T ss_pred             hHHHHHhhccCCCCEEEECCc
Confidence            84   32  2 6999997654

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.16  E-value=1.2e-10  Score=91.67  Aligned_cols=67  Identities=18%  Similarity=0.261  Sum_probs=59.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeec
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVA  101 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~  101 (232)
                      .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.      ++++++.+|+.+.+.+ +||+|++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~D~v~~  106 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRLGRKFSAVVS  106 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCCSSCEEEEEE
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHcccCCCCcEEEE
Confidence            46789999999999999999987679999999999999999875      4689999999987654 7999994

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.16  E-value=5.8e-10  Score=93.98  Aligned_cols=85  Identities=18%  Similarity=0.276  Sum_probs=72.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ....+++.++..++.+|||+|||+|.++..+++  +..+++++|+ +.+++.+++++...++.++++++.+|+.+ +.+ 
T Consensus       190 ~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~  267 (369)
T 3gwz_A          190 EAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPD  267 (369)
T ss_dssp             HHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCS
T ss_pred             hHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCC
Confidence            345667777777889999999999999999998  4679999999 99999999999888876789999999983 444 


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      .||+|++.-.
T Consensus       268 ~~D~v~~~~v  277 (369)
T 3gwz_A          268 GADVYLIKHV  277 (369)
T ss_dssp             SCSEEEEESC
T ss_pred             CceEEEhhhh
Confidence            7999887543

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.15  E-value=8.3e-11  Score=99.69  Aligned_cols=81  Identities=20%  Similarity=0.259  Sum_probs=67.0

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhc-----C-C-CccEEEEEcCCCCC------
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADS-----G-F-HDRLNVISKDALKT------   91 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~-----~-~-~~~~~~~~~D~~~~------   91 (232)
                      +.++.+|||+|||+|.++..+++   .+.+|+|+|+++.+++.+++++...     | . .++++++.+|+.++      
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~  160 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPE  160 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSC
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccC
Confidence            45788999999999999999988   3569999999999999999998654     3 2 15799999999876      


Q ss_pred             CCC--CcceeecccCcccc
Q 047897           92 EFP--QFDLVVANIPYGIS  108 (232)
Q Consensus        92 ~~~--~~D~Vi~n~p~~~~  108 (232)
                      +++  +||+|+++..++..
T Consensus       161 ~~~~~~fD~V~~~~~l~~~  179 (383)
T 4fsd_A          161 GVPDSSVDIVISNCVCNLS  179 (383)
T ss_dssp             CCCTTCEEEEEEESCGGGC
T ss_pred             CCCCCCEEEEEEccchhcC
Confidence            443  79999998776654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.15  E-value=2.5e-10  Score=96.22  Aligned_cols=89  Identities=24%  Similarity=0.317  Sum_probs=73.2

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-C
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-Q   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~   95 (232)
                      ...+++.+++.++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++++...++.++++++.+|+.+ +.+ .
T Consensus       171 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~  248 (374)
T 1qzz_A          171 YEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVT  248 (374)
T ss_dssp             THHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCC
T ss_pred             HHHHHHhCCCCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCC
Confidence            355666777778899999999999999999983  579999999 99999999999888876689999999986 233 5


Q ss_pred             cceeecccCcc-cch
Q 047897           96 FDLVVANIPYG-ISS  109 (232)
Q Consensus        96 ~D~Vi~n~p~~-~~~  109 (232)
                      ||+|+++..++ +..
T Consensus       249 ~D~v~~~~vl~~~~~  263 (374)
T 1qzz_A          249 ADVVLLSFVLLNWSD  263 (374)
T ss_dssp             EEEEEEESCGGGSCH
T ss_pred             CCEEEEeccccCCCH
Confidence            99999865543 443

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.15  E-value=2e-10  Score=88.89  Aligned_cols=75  Identities=25%  Similarity=0.369  Sum_probs=61.6

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccc
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFD   97 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D   97 (232)
                      .++..+.. ++.+|||+|||+|.++..+   +. +++|+|+++.+++.++++.      .+++++++|+.+++.+  +||
T Consensus        28 ~~l~~~~~-~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD   97 (211)
T 2gs9_A           28 RALKGLLP-PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFD   97 (211)
T ss_dssp             HHHHTTCC-CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEE
T ss_pred             HHHHHhcC-CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEE
Confidence            34444433 7889999999999999888   55 9999999999999999886      3688999999988754  799


Q ss_pred             eeecccCc
Q 047897           98 LVVANIPY  105 (232)
Q Consensus        98 ~Vi~n~p~  105 (232)
                      +|+++...
T Consensus        98 ~v~~~~~l  105 (211)
T 2gs9_A           98 VVLLFTTL  105 (211)
T ss_dssp             EEEEESCT
T ss_pred             EEEEcChh
Confidence            99987553

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.15  E-value=1.9e-10  Score=90.34  Aligned_cols=74  Identities=18%  Similarity=0.121  Sum_probs=64.9

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPY  105 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~  105 (232)
                      .+..+|||||||+|-++..+. ...+++|+|+|+.+++.+++++...+  .+..+..+|....+.+ ++|+|+++..+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~~~~DvvLllk~l  178 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPAEAGDLALIFKLL  178 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCCCBCSEEEEESCH
T ss_pred             CCCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCCCCcchHHHHHHH
Confidence            457799999999999999988 78899999999999999999998877  4689999999877665 89999987543

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.14  E-value=8e-11  Score=96.74  Aligned_cols=79  Identities=22%  Similarity=0.260  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh---cCCCccEEEEEcCCCCCC----CCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD---SGFHDRLNVISKDALKTE----FPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~~~D~~~~~----~~~~D~V   99 (232)
                      .++.+|||||||+|.++..+++.  ..+|+++|+|+.+++.+++++..   ....++++++.+|+.++.    ..+||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            46789999999999999999984  57999999999999999998742   112268999999998753    3479999


Q ss_pred             ecccCccc
Q 047897          100 VANIPYGI  107 (232)
Q Consensus       100 i~n~p~~~  107 (232)
                      ++|.+.+.
T Consensus       174 i~d~~~~~  181 (304)
T 3bwc_A          174 IIDTTDPA  181 (304)
T ss_dssp             EEECC---
T ss_pred             EECCCCcc
Confidence            99987543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.14  E-value=2.5e-10  Score=94.75  Aligned_cols=80  Identities=20%  Similarity=0.270  Sum_probs=66.8

Q ss_pred             HHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cccee
Q 047897           23 VRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLV   99 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~V   99 (232)
                      ++.++..+..+|||||||+|.++..+++  +..+++++|+ +.+++.+++++...++.++++++.+|+.+ +.+ .||+|
T Consensus       162 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~v  239 (332)
T 3i53_A          162 AAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGGY  239 (332)
T ss_dssp             GGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSEE
T ss_pred             HHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcEE
Confidence            3444555678999999999999999988  5679999999 99999999999888876789999999973 344 89999


Q ss_pred             ecccC
Q 047897          100 VANIP  104 (232)
Q Consensus       100 i~n~p  104 (232)
                      ++.-.
T Consensus       240 ~~~~v  244 (332)
T 3i53_A          240 VLSAV  244 (332)
T ss_dssp             EEESC
T ss_pred             EEehh
Confidence            87543

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.13  E-value=5.1e-11  Score=92.94  Aligned_cols=80  Identities=19%  Similarity=0.215  Sum_probs=64.5

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---C--CC
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---E--FP   94 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---~--~~   94 (232)
                      ..+++.+...++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.++++       .++.++.+|+.++   +  ..
T Consensus        42 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~  114 (227)
T 3e8s_A           42 QAILLAILGRQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVG  114 (227)
T ss_dssp             HHHHHHHHHTCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCC
T ss_pred             HHHHHHhhcCCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccC
Confidence            4455555555678999999999999999999888999999999999999987       2467888888776   2  23


Q ss_pred             -CcceeecccCcc
Q 047897           95 -QFDLVVANIPYG  106 (232)
Q Consensus        95 -~~D~Vi~n~p~~  106 (232)
                       +||+|+++..++
T Consensus       115 ~~fD~v~~~~~l~  127 (227)
T 3e8s_A          115 KDYDLICANFALL  127 (227)
T ss_dssp             CCEEEEEEESCCC
T ss_pred             CCccEEEECchhh
Confidence             599999976544

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.13  E-value=2.7e-10  Score=95.22  Aligned_cols=84  Identities=14%  Similarity=0.206  Sum_probs=70.9

Q ss_pred             HHHHhcCCCC-CCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--CC-
Q 047897           21 SIVRKSSINP-DDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--FP-   94 (232)
Q Consensus        21 ~i~~~~~~~~-~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~-   94 (232)
                      .+++.++..+ +.+|||||||+|.++..+++  +..+++++|+ +.+++.++++....++.++++++.+|+.+.+  .+ 
T Consensus       169 ~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~  247 (352)
T 3mcz_A          169 DVVSELGVFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGG  247 (352)
T ss_dssp             HHHHTCGGGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTC
T ss_pred             HHHHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCC
Confidence            5566666666 78999999999999999998  4679999999 8899999999988877678999999999875  44 


Q ss_pred             CcceeecccCc
Q 047897           95 QFDLVVANIPY  105 (232)
Q Consensus        95 ~~D~Vi~n~p~  105 (232)
                      .||+|+++-..
T Consensus       248 ~~D~v~~~~vl  258 (352)
T 3mcz_A          248 AADVVMLNDCL  258 (352)
T ss_dssp             CEEEEEEESCG
T ss_pred             CccEEEEeccc
Confidence            69999985443

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.13  E-value=5e-10  Score=93.93  Aligned_cols=85  Identities=18%  Similarity=0.287  Sum_probs=70.0

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFD   97 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D   97 (232)
                      ..+++.++..++.+|||||||+|.++..+++.  ..+++++|+ +.+++.+++++...++.++++++.+|+.+.....||
T Consensus       173 ~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D  251 (360)
T 1tw3_A          173 DAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKAD  251 (360)
T ss_dssp             HHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEE
T ss_pred             HHHHHhCCCccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCcc
Confidence            45566667778889999999999999999883  578999999 999999999998888766899999999863222599


Q ss_pred             eeecccCc
Q 047897           98 LVVANIPY  105 (232)
Q Consensus        98 ~Vi~n~p~  105 (232)
                      +|+++..+
T Consensus       252 ~v~~~~vl  259 (360)
T 1tw3_A          252 AIILSFVL  259 (360)
T ss_dssp             EEEEESCG
T ss_pred             EEEEcccc
Confidence            98886554

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.13  E-value=1.4e-10  Score=94.04  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC---CCCCcceeec
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT---EFPQFDLVVA  101 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~---~~~~~D~Vi~  101 (232)
                      .+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+.   ..++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            5679999999999999999984  479999999999999999998542  22 36899999999764   2347999999


Q ss_pred             ccCccc
Q 047897          102 NIPYGI  107 (232)
Q Consensus       102 n~p~~~  107 (232)
                      |+|.+.
T Consensus       155 d~~~~~  160 (275)
T 1iy9_A          155 DSTEPV  160 (275)
T ss_dssp             SCSSCC
T ss_pred             CCCCCC
Confidence            987643

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.12  E-value=1.1e-10  Score=97.14  Aligned_cols=77  Identities=23%  Similarity=0.397  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC----CCCCcce
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT----EFPQFDL   98 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~----~~~~~D~   98 (232)
                      ...+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+.    +..+||+
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl  197 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA  197 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence            345679999999999999999984  579999999999999999998642  33 25899999998764    2347999


Q ss_pred             eecccC
Q 047897           99 VVANIP  104 (232)
Q Consensus        99 Vi~n~p  104 (232)
                      |++|++
T Consensus       198 Ii~d~~  203 (334)
T 1xj5_A          198 VIVDSS  203 (334)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            999875

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.11  E-value=5.9e-10  Score=93.76  Aligned_cols=76  Identities=20%  Similarity=0.351  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--CCC-Ccceeeccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--EFP-QFDLVVANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--~~~-~~D~Vi~n~  103 (232)
                      ....+|||||||+|.++..+++  ++.+++++|+ +.+++.+++++...++.++++++.+|+.+.  +.+ .||+|++.-
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~  256 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQ  256 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEES
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEec
Confidence            4567999999999999999998  5789999999 999999999998887767899999999986  354 899988754


Q ss_pred             Cc
Q 047897          104 PY  105 (232)
Q Consensus       104 p~  105 (232)
                      ..
T Consensus       257 vl  258 (363)
T 3dp7_A          257 FL  258 (363)
T ss_dssp             CS
T ss_pred             hh
Confidence            43

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.11  E-value=1.6e-10  Score=92.51  Aligned_cols=79  Identities=13%  Similarity=0.144  Sum_probs=62.8

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCC----------------------------
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGF----------------------------   77 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~----------------------------   77 (232)
                      ...++.+|||+|||+|.++..++..+. +|+|+|+++.+++.+++++...+.                            
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  132 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKL  132 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHH
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHh
Confidence            335678999999999999999888665 999999999999999998865320                            


Q ss_pred             CccE-EEEEcCCCCCCC------CCcceeecccCc
Q 047897           78 HDRL-NVISKDALKTEF------PQFDLVVANIPY  105 (232)
Q Consensus        78 ~~~~-~~~~~D~~~~~~------~~~D~Vi~n~p~  105 (232)
                      ..++ .++.+|+.+.+.      ++||+|+++...
T Consensus       133 ~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l  167 (265)
T 2i62_A          133 RRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCL  167 (265)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred             hhhheeEEEeeeccCCCCCccccCCccEEEEhhhh
Confidence            0127 999999987642      479999987543

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.11  E-value=4.5e-10  Score=89.95  Aligned_cols=67  Identities=28%  Similarity=0.415  Sum_probs=58.5

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      ++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.++++..     .+  ++.+|+.+++.+  +||+|+++.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~-----~~--~~~~d~~~~~~~~~~fD~v~~~~  122 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-----KN--VVEAKAEDLPFPSGAFEAVLALG  122 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-----SC--EEECCTTSCCSCTTCEEEEEECS
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcC-----CC--EEECcHHHCCCCCCCEEEEEEcc
Confidence            67899999999999999999988899999999999999998864     12  889999887753  799999853

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.11  E-value=4.4e-10  Score=90.97  Aligned_cols=88  Identities=17%  Similarity=0.116  Sum_probs=66.1

Q ss_pred             HHHHHHHHHhcC-CCCCCEEEEEcCCc---cHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           16 QRVLDSIVRKSS-INPDDTVLEIGPGT---GNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        16 ~~~~~~i~~~~~-~~~~~~vLDiG~G~---G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +.+++.+++.+. ..+..+|||||||+   |.++..+.+  .+.+|+++|+|+.|++.+++++...   ++++++.+|+.
T Consensus        62 ~~~~~~~~~~l~~~~~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~---~~v~~~~~D~~  138 (274)
T 2qe6_A           62 RKVLVRGVRFLAGEAGISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD---PNTAVFTADVR  138 (274)
T ss_dssp             HHHHHHHHHHHHTTTCCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC---TTEEEEECCTT
T ss_pred             hHHHHHHHHHHhhccCCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC---CCeEEEEeeCC
Confidence            344445555443 23447999999999   988876665  4689999999999999999998542   57999999997


Q ss_pred             C-------------CCCCCcceeecccCcc
Q 047897           90 K-------------TEFPQFDLVVANIPYG  106 (232)
Q Consensus        90 ~-------------~~~~~~D~Vi~n~p~~  106 (232)
                      +             +++++||+|+++..++
T Consensus       139 ~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh  168 (274)
T 2qe6_A          139 DPEYILNHPDVRRMIDFSRPAAIMLVGMLH  168 (274)
T ss_dssp             CHHHHHHSHHHHHHCCTTSCCEEEETTTGG
T ss_pred             CchhhhccchhhccCCCCCCEEEEEechhh
Confidence            5             3345789998875444

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.11  E-value=3.1e-10  Score=93.09  Aligned_cols=75  Identities=17%  Similarity=0.129  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCc-----cEEEEEcCC------CC----CCC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHD-----RLNVISKDA------LK----TEF   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-----~~~~~~~D~------~~----~~~   93 (232)
                      ++.+|||||||+|..+..++. .+.+|+|+|+|+.|++.|+++....+...     ++++..+|+      .+    .+.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            478999999999987766665 45799999999999999999987654311     367888887      22    233


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ++||+|++...
T Consensus       128 ~~FD~V~~~~~  138 (302)
T 2vdw_A          128 GKFNIIDWQFA  138 (302)
T ss_dssp             SCEEEEEEESC
T ss_pred             CCeeEEEECch
Confidence            58999998643

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.11  E-value=1.7e-10  Score=94.68  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh--cCC-CccEEEEEcCCCCC---CCCCccee
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD--SGF-HDRLNVISKDALKT---EFPQFDLV   99 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~D~~~~---~~~~~D~V   99 (232)
                      ...+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..  .++ .++++++.+|+.+.   ...+||+|
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~I  172 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  172 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEE
Confidence            345679999999999999999984  47999999999999999999864  232 36899999999763   23479999


Q ss_pred             ecccCcc
Q 047897          100 VANIPYG  106 (232)
Q Consensus       100 i~n~p~~  106 (232)
                      ++|.|.+
T Consensus       173 i~d~~~~  179 (304)
T 2o07_A          173 ITDSSDP  179 (304)
T ss_dssp             EEECC--
T ss_pred             EECCCCC
Confidence            9998754

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.10  E-value=1e-10  Score=95.01  Aligned_cols=78  Identities=23%  Similarity=0.373  Sum_probs=64.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhc--CC--------CccEEEEEcCCCCCC--CCC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADS--GF--------HDRLNVISKDALKTE--FPQ   95 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~--~~--------~~~~~~~~~D~~~~~--~~~   95 (232)
                      ..+.+|||||||+|.++..+++. ..+|+++|+|+.+++.|++++ ..  ++        .++++++.+|+.+..  ..+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            45679999999999999999985 569999999999999999998 33  22        368999999986542  357


Q ss_pred             cceeecccCccc
Q 047897           96 FDLVVANIPYGI  107 (232)
Q Consensus        96 ~D~Vi~n~p~~~  107 (232)
                      ||+|++|+|.+.
T Consensus       153 fD~Ii~d~~~~~  164 (281)
T 1mjf_A          153 FDVIIADSTDPV  164 (281)
T ss_dssp             EEEEEEECCCCC
T ss_pred             eeEEEECCCCCC
Confidence            999999988643

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=99.10  E-value=1.4e-10  Score=92.88  Aligned_cols=91  Identities=12%  Similarity=0.144  Sum_probs=78.8

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      |.+-|-+++.+++.+.+.+++.++|.+||.|+.|..+++.+.+|+|+|.|+.+++.+++ +..    +++.++++|+.++
T Consensus         4 ~~H~pVLl~e~le~L~~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l   78 (285)
T 1wg8_A            4 MTHVPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHL   78 (285)
T ss_dssp             CCCCCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGH
T ss_pred             CCchhHHHHHHHHhhCCCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchH
Confidence            34557889999999999999999999999999999999988899999999999999998 644    4899999999876


Q ss_pred             C-------CCCcceeecccCccc
Q 047897           92 E-------FPQFDLVVANIPYGI  107 (232)
Q Consensus        92 ~-------~~~~D~Vi~n~p~~~  107 (232)
                      +       ..++|.|+.|+.+..
T Consensus        79 ~~~L~~~g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           79 KRHLAALGVERVDGILADLGVSS  101 (285)
T ss_dssp             HHHHHHTTCSCEEEEEEECSCCH
T ss_pred             HHHHHHcCCCCcCEEEeCCcccc
Confidence            3       246899999987654

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.09  E-value=3.5e-10  Score=86.65  Aligned_cols=69  Identities=26%  Similarity=0.388  Sum_probs=57.0

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-------------C
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-------------P   94 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-------------~   94 (232)
                      +.++.+|||+|||+|.++..+++.+.+|+|+|+++..           .. ++++++++|+.+.+.             +
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEME-----------EI-AGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCC-----------CC-TTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHcCCcEEEEeccccc-----------cC-CCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            4678999999999999999999988999999999741           12 579999999988641             3


Q ss_pred             CcceeecccCcccc
Q 047897           95 QFDLVVANIPYGIS  108 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~  108 (232)
                      .||+|++|++.+.+
T Consensus        91 ~~D~Vlsd~~~~~~  104 (191)
T 3dou_A           91 KVDDVVSDAMAKVS  104 (191)
T ss_dssp             SEEEEEECCCCCCC
T ss_pred             cceEEecCCCcCCC
Confidence            89999999865443

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.09  E-value=5.3e-10  Score=89.89  Aligned_cols=69  Identities=14%  Similarity=0.313  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      .++.+|||+|||+|.++..+++.  +.+|+|+|+++.+++.++++.      .++.++.+|+.+++.+  +||+|+++.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeC
Confidence            46789999999999999999984  689999999999999998875      4688999999887653  799999864

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.09  E-value=4.9e-10  Score=92.99  Aligned_cols=86  Identities=19%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .....+++.++..+ .+|||+|||+|.++..+++  +..+++++|+ +.+++.+++++...++.++++++.+|+.+ +.+
T Consensus       155 ~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~  231 (334)
T 2ip2_A          155 LAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVP  231 (334)
T ss_dssp             HHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCC
T ss_pred             HHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCC
Confidence            34566777777666 8999999999999999988  3679999999 99999999998776655689999999987 343


Q ss_pred             -CcceeecccCc
Q 047897           95 -QFDLVVANIPY  105 (232)
Q Consensus        95 -~~D~Vi~n~p~  105 (232)
                       .||+|+++-..
T Consensus       232 ~~~D~v~~~~vl  243 (334)
T 2ip2_A          232 SNGDIYLLSRII  243 (334)
T ss_dssp             SSCSEEEEESCG
T ss_pred             CCCCEEEEchhc
Confidence             69999986554

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.07  E-value=2.5e-10  Score=93.44  Aligned_cols=77  Identities=21%  Similarity=0.336  Sum_probs=61.7

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh--cCC-CccEEEEEcCCCCC-C--CCCcceeec
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD--SGF-HDRLNVISKDALKT-E--FPQFDLVVA  101 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~~-~~~~~~~~~D~~~~-~--~~~~D~Vi~  101 (232)
                      .+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.+++++..  .++ .++++++.+|+.+. +  ..+||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999984  57999999999999999999854  222 26899999998763 2  247999999


Q ss_pred             ccCcc
Q 047897          102 NIPYG  106 (232)
Q Consensus       102 n~p~~  106 (232)
                      |+|.+
T Consensus       170 d~~~~  174 (296)
T 1inl_A          170 DSTDP  174 (296)
T ss_dssp             EC---
T ss_pred             cCCCc
Confidence            98754

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.07  E-value=3.5e-10  Score=93.29  Aligned_cols=79  Identities=24%  Similarity=0.420  Sum_probs=65.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh--cC-C-CccEEEEEcCCCCC---CCCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD--SG-F-HDRLNVISKDALKT---EFPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~--~~-~-~~~~~~~~~D~~~~---~~~~~D~V   99 (232)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++..  .+ + .++++++.+|+.+.   ...+||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            35679999999999999999984  57999999999999999999864  12 1 26899999999774   23479999


Q ss_pred             ecccCccc
Q 047897          100 VANIPYGI  107 (232)
Q Consensus       100 i~n~p~~~  107 (232)
                      +++.+.+.
T Consensus       156 i~d~~~~~  163 (314)
T 1uir_A          156 IIDLTDPV  163 (314)
T ss_dssp             EEECCCCB
T ss_pred             EECCCCcc
Confidence            99987654

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.07  E-value=1.4e-10  Score=91.83  Aligned_cols=79  Identities=23%  Similarity=0.262  Sum_probs=62.3

Q ss_pred             HHHHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--C-
Q 047897           17 RVLDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--E-   92 (232)
Q Consensus        17 ~~~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--~-   92 (232)
                      .+.+.+...+. +.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.++++         ++++.+|+.+.  + 
T Consensus        27 ~~~~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~   97 (240)
T 3dli_A           27 LVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSL   97 (240)
T ss_dssp             HHHHHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTS
T ss_pred             HHHHHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhc
Confidence            34444444443 35678999999999999999998888999999999999988765         66888998774  3 


Q ss_pred             -CCCcceeecccC
Q 047897           93 -FPQFDLVVANIP  104 (232)
Q Consensus        93 -~~~~D~Vi~n~p  104 (232)
                       ..+||+|+++-.
T Consensus        98 ~~~~fD~i~~~~~  110 (240)
T 3dli_A           98 PDKYLDGVMISHF  110 (240)
T ss_dssp             CTTCBSEEEEESC
T ss_pred             CCCCeeEEEECCc
Confidence             348999998644

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.06  E-value=1.8e-10  Score=95.37  Aligned_cols=76  Identities=25%  Similarity=0.439  Sum_probs=63.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC---CCCCcceee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT---EFPQFDLVV  100 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~---~~~~~D~Vi  100 (232)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+.   ..++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            35679999999999999999984  589999999999999999998652  22 25899999998764   234799999


Q ss_pred             cccC
Q 047897          101 ANIP  104 (232)
Q Consensus       101 ~n~p  104 (232)
                      +|++
T Consensus       195 ~d~~  198 (321)
T 2pt6_A          195 VDSS  198 (321)
T ss_dssp             EECC
T ss_pred             ECCc
Confidence            9874

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.06  E-value=1.5e-10  Score=93.06  Aligned_cols=79  Identities=18%  Similarity=0.180  Sum_probs=60.3

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCC----------------------------
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGF----------------------------   77 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~----------------------------   77 (232)
                      ...++.+|||||||+|.++..++..+ .+|+|+|+|+.+++.|++++.....                            
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            44577899999999998887777655 4799999999999999988754310                            


Q ss_pred             CccEE-EEEcCCCCC-C-----CCCcceeecccCc
Q 047897           78 HDRLN-VISKDALKT-E-----FPQFDLVVANIPY  105 (232)
Q Consensus        78 ~~~~~-~~~~D~~~~-~-----~~~~D~Vi~n~p~  105 (232)
                      ..++. ++.+|+.+. +     .++||+|+++...
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l  166 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAM  166 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCH
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehHHH
Confidence            01344 899999884 2     3479999998654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.06  E-value=3.9e-11  Score=97.18  Aligned_cols=83  Identities=19%  Similarity=0.178  Sum_probs=61.5

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEE--EcCCCCCCCCCc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVI--SKDALKTEFPQF   96 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~--~~D~~~~~~~~~   96 (232)
                      ..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.... .....++.++  ++|+.+++..+|
T Consensus        72 ~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~f  149 (276)
T 2wa2_A           72 AWIDERGGVELKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQA  149 (276)
T ss_dssp             HHHHHTTSCCCCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCC
T ss_pred             HHHHHcCCCCCCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCc
Confidence            44555544567889999999999999999988 8999999998 54333221110 0111268999  999999886689


Q ss_pred             ceeecccC
Q 047897           97 DLVVANIP  104 (232)
Q Consensus        97 D~Vi~n~p  104 (232)
                      |+|+++..
T Consensus       150 D~Vvsd~~  157 (276)
T 2wa2_A          150 DTVLCDIG  157 (276)
T ss_dssp             SEEEECCC
T ss_pred             CEEEECCC
Confidence            99999876

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.05  E-value=4.4e-10  Score=89.10  Aligned_cols=75  Identities=15%  Similarity=0.164  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIPY  105 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p~  105 (232)
                      .+..+|||||||.|-++..++.  ...+|+|+|+|+.+++.+++++...|+.  ..+...|...-+.+ .+|+++++..+
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~p~~~~DvaL~lkti  208 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDRLDEPADVTLLLKTL  208 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSCCCSCCSEEEETTCH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccCCCCCcchHHHHHHH
Confidence            3466999999999999999887  4689999999999999999999998864  88899998876554 89999987643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.05  E-value=1.8e-10  Score=97.40  Aligned_cols=85  Identities=16%  Similarity=0.187  Sum_probs=70.3

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--C-CeEEEEEcCHHHHHHHHHHHhhcCCCcc-EEEEEcCCCCCC----CCCcceee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--S-KKVHAIEIDERMVEILNRRAADSGFHDR-LNVISKDALKTE----FPQFDLVV  100 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~-~~~~~~D~~~~~----~~~~D~Vi  100 (232)
                      .++.+|||++||+|.++..++..  + .+|+++|+++.+++.+++|++.+++.++ ++++++|+.++.    ...||+|+
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~  130 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVD  130 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEE
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEE
Confidence            35789999999999999999983  4 6899999999999999999999998655 999999996642    23799999


Q ss_pred             cccCcccchHHHHH
Q 047897          101 ANIPYGISSPLVAK  114 (232)
Q Consensus       101 ~n~p~~~~~~~l~~  114 (232)
                      .|+ |....+++..
T Consensus       131 lDP-~g~~~~~l~~  143 (392)
T 3axs_A          131 LDP-FGTPVPFIES  143 (392)
T ss_dssp             ECC-SSCCHHHHHH
T ss_pred             ECC-CcCHHHHHHH
Confidence            997 5544455443

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.05  E-value=1.9e-10  Score=94.76  Aligned_cols=77  Identities=26%  Similarity=0.473  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCC---CCCCcceee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKT---EFPQFDLVV  100 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~---~~~~~D~Vi  100 (232)
                      ..+.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++...  ++ .++++++.+|+.+.   ...+||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            35679999999999999999984  579999999999999999998653  22 36899999999764   234799999


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      +|.+.
T Consensus       187 ~d~~~  191 (314)
T 2b2c_A          187 TDSSD  191 (314)
T ss_dssp             ECCC-
T ss_pred             EcCCC
Confidence            98853

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.05  E-value=2.9e-10  Score=93.36  Aligned_cols=72  Identities=11%  Similarity=0.188  Sum_probs=61.4

Q ss_pred             CEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeecccC
Q 047897           32 DTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANIP  104 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~p  104 (232)
                      .+|||||||+|.++..+++  .+.+|++||+|+.+++.|++++.... .++++++.+|+.++    +..+||+|+++.+
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~  168 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF  168 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence            4899999999999999998  46799999999999999999986532 26899999999765    2347999999864

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.05  E-value=6.8e-11  Score=96.05  Aligned_cols=88  Identities=16%  Similarity=0.183  Sum_probs=61.1

Q ss_pred             HHHHHHHhcCCC-CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE-EcCCCC----
Q 047897           18 VLDSIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVI-SKDALK----   90 (232)
Q Consensus        18 ~~~~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~D~~~----   90 (232)
                      -+..+++.+.+. ++.+|||+|||+|.+|..+++.+ .+|+|+|+++.|++.+.++.      +++... ..|+..    
T Consensus        72 Kl~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~l~~~  145 (291)
T 3hp7_A           72 KLEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRYAEPV  145 (291)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGGCCGG
T ss_pred             HHHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCceecchh
Confidence            344566666655 56799999999999999998865 69999999999998854432      233322 233333    


Q ss_pred             -CCCCCcceeecccCcccchHH
Q 047897           91 -TEFPQFDLVVANIPYGISSPL  111 (232)
Q Consensus        91 -~~~~~~D~Vi~n~p~~~~~~~  111 (232)
                       ++.++||.|+++..|+.....
T Consensus       146 ~l~~~~fD~v~~d~sf~sl~~v  167 (291)
T 3hp7_A          146 DFTEGLPSFASIDVSFISLNLI  167 (291)
T ss_dssp             GCTTCCCSEEEECCSSSCGGGT
T ss_pred             hCCCCCCCEEEEEeeHhhHHHH
Confidence             233359999999887655433

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.04  E-value=4.6e-11  Score=96.24  Aligned_cols=84  Identities=10%  Similarity=0.098  Sum_probs=61.7

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEE--EcCCCCCCCCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVI--SKDALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~--~~D~~~~~~~~   95 (232)
                      +..+.+...+.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.... .....++.++  ++|+.+++..+
T Consensus        63 L~~i~~~~~~~~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~  140 (265)
T 2oxt_A           63 LAWMEERGYVELTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVER  140 (265)
T ss_dssp             HHHHHHHTSCCCCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred             HHHHHHcCCCCCCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCC
Confidence            345555545667889999999999999999988 8999999998 53322211100 0011268899  99999988668


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      ||+|+++..
T Consensus       141 fD~V~sd~~  149 (265)
T 2oxt_A          141 TDVIMCDVG  149 (265)
T ss_dssp             CSEEEECCC
T ss_pred             CcEEEEeCc
Confidence            999999876

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.04  E-value=6.9e-10  Score=86.62  Aligned_cols=79  Identities=23%  Similarity=0.256  Sum_probs=63.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC--CCC--
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK--TEF--   93 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~--~~~--   93 (232)
                      +...+++.+. .++.+|||+|||+|.++..+++.+.+++|+|+++.+++.++++.        .+++.+|+.+  .+.  
T Consensus        21 ~~~~l~~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~   91 (230)
T 3cc8_A           21 VNPNLLKHIK-KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEE   91 (230)
T ss_dssp             CCHHHHTTCC-TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCT
T ss_pred             HHHHHHHHhc-cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCC
Confidence            3445566665 67889999999999999999987789999999999999988764        2678999876  333  


Q ss_pred             CCcceeecccCc
Q 047897           94 PQFDLVVANIPY  105 (232)
Q Consensus        94 ~~~D~Vi~n~p~  105 (232)
                      .+||+|+++-.+
T Consensus        92 ~~fD~v~~~~~l  103 (230)
T 3cc8_A           92 EQFDCVIFGDVL  103 (230)
T ss_dssp             TCEEEEEEESCG
T ss_pred             CccCEEEECChh
Confidence            379999986543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.03  E-value=4.3e-10  Score=91.44  Aligned_cols=79  Identities=23%  Similarity=0.367  Sum_probs=64.5

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC--C-CccEEEEEcCCCCCC---CCCccee
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG--F-HDRLNVISKDALKTE---FPQFDLV   99 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~--~-~~~~~~~~~D~~~~~---~~~~D~V   99 (232)
                      ..++.+|||||||+|.++..+++.  ..+|+++|+|+.+++.|++++...+  + .++++++.+|+.+..   .++||+|
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI  155 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence            345679999999999999999984  5799999999999999999986432  1 268999999997642   3479999


Q ss_pred             ecccCcc
Q 047897          100 VANIPYG  106 (232)
Q Consensus       100 i~n~p~~  106 (232)
                      +++.+.+
T Consensus       156 i~d~~~~  162 (283)
T 2i7c_A          156 IVDSSDP  162 (283)
T ss_dssp             EEECCCT
T ss_pred             EEcCCCC
Confidence            9987543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.01  E-value=6.1e-10  Score=90.57  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=60.6

Q ss_pred             HHHHHHhcCC--CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhc-----------------CCC
Q 047897           19 LDSIVRKSSI--NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADS-----------------GFH   78 (232)
Q Consensus        19 ~~~i~~~~~~--~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~-----------------~~~   78 (232)
                      ++.+.+.+..  .++.+|||||||+|.++..++. .+.+|+|+|+|+.|++.|++++...                 +..
T Consensus        58 ~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~  137 (289)
T 2g72_A           58 LRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKG  137 (289)
T ss_dssp             HHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSC
T ss_pred             HHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcc
Confidence            3444444422  3678999999999995544444 4789999999999999999876421                 100


Q ss_pred             ------------ccEEEEEcCCCC-CCC-------CCcceeecccCcc
Q 047897           79 ------------DRLNVISKDALK-TEF-------PQFDLVVANIPYG  106 (232)
Q Consensus        79 ------------~~~~~~~~D~~~-~~~-------~~~D~Vi~n~p~~  106 (232)
                                  ..++++.+|+.+ .++       .+||+|+++..++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~  185 (289)
T 2g72_A          138 ECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLE  185 (289)
T ss_dssp             CCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHH
T ss_pred             cchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhhhh
Confidence                        025788889987 442       2499999986543

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.01  E-value=6.7e-10  Score=93.77  Aligned_cols=82  Identities=16%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc---------------CCCccEEEEEcCCCCCC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS---------------GFHDRLNVISKDALKTE   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~---------------~~~~~~~~~~~D~~~~~   92 (232)
                      ++.+|||+|||+|.++..++..  +.+|+++|+|+.+++.+++|+..+               ++. +++++++|+.++.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHH
Confidence            6789999999999999999884  468999999999999999999988               763 5999999997653


Q ss_pred             ---CCCcceeecccCcccchHHHH
Q 047897           93 ---FPQFDLVVANIPYGISSPLVA  113 (232)
Q Consensus        93 ---~~~~D~Vi~n~p~~~~~~~l~  113 (232)
                         ...||+|+.|+|+. ..+++.
T Consensus       126 ~~~~~~fD~I~lDP~~~-~~~~l~  148 (378)
T 2dul_A          126 AERHRYFHFIDLDPFGS-PMEFLD  148 (378)
T ss_dssp             HHSTTCEEEEEECCSSC-CHHHHH
T ss_pred             HhccCCCCEEEeCCCCC-HHHHHH
Confidence               23799999887543 344443

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.00  E-value=3.1e-10  Score=84.79  Aligned_cols=77  Identities=17%  Similarity=0.307  Sum_probs=61.2

Q ss_pred             HHHHHhcC-CCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897           20 DSIVRKSS-INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---   92 (232)
Q Consensus        20 ~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---   92 (232)
                      ..+++... +.++.+|||+|||+|.++..+++.   +.+++|+|+++ +++.           .+++++.+|+.+.+   
T Consensus        11 ~~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~   78 (180)
T 1ej0_A           11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMK   78 (180)
T ss_dssp             HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHH
T ss_pred             HHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhh
Confidence            34555544 567889999999999999999884   47999999999 6532           46999999998864   


Q ss_pred             -----C--CCcceeecccCcccc
Q 047897           93 -----F--PQFDLVVANIPYGIS  108 (232)
Q Consensus        93 -----~--~~~D~Vi~n~p~~~~  108 (232)
                           .  .+||+|++|.|++..
T Consensus        79 ~~~~~~~~~~~D~i~~~~~~~~~  101 (180)
T 1ej0_A           79 ALLERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             HHHHHHTTCCEEEEEECCCCCCC
T ss_pred             hhhccCCCCceeEEEECCCcccc
Confidence                 3  479999999887654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.99  E-value=3.5e-10  Score=90.95  Aligned_cols=75  Identities=11%  Similarity=0.066  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc--CC-CccEEEEEcCCCCCCCCCcceeecccC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS--GF-HDRLNVISKDALKTEFPQFDLVVANIP  104 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--~~-~~~~~~~~~D~~~~~~~~~D~Vi~n~p  104 (232)
                      ..+.+|||||||+|.++..+++.+.+|+++|+|+.+++.|++++...  ++ .++++++.+|+.++. .+||+|+++.+
T Consensus        71 ~~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d~~  148 (262)
T 2cmg_A           71 KELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCLQE  148 (262)
T ss_dssp             SCCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEESSC
T ss_pred             CCCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEECCC
Confidence            35679999999999999999875589999999999999999876431  11 258999999999876 78999999864

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.98  E-value=2.7e-10  Score=89.96  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCC-CCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHH
Q 047897           17 RVLDSIVRKSSIN-PDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRA   72 (232)
Q Consensus        17 ~~~~~i~~~~~~~-~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~   72 (232)
                      .-++.+++.+.+. ++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.++++.
T Consensus        23 ~kL~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           23 LKLEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             HHHHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            3456667777654 46699999999999999999976 59999999999999987764

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.95  E-value=1.6e-09  Score=83.19  Aligned_cols=74  Identities=16%  Similarity=0.236  Sum_probs=57.5

Q ss_pred             HHHhcC-CCCCCEEEEEcCCccHhHHHHHhc----CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----
Q 047897           22 IVRKSS-INPDDTVLEIGPGTGNLTLKLLEV----SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----   92 (232)
Q Consensus        22 i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~~----~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----   92 (232)
                      +.+... +.++.+|||+|||+|.++..+++.    ..+|+|+|+++..           .. ++++++++|+.+.+    
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~   80 (201)
T 2plw_A           13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNI   80 (201)
T ss_dssp             HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC
T ss_pred             HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhh
Confidence            444443 467889999999999999999983    4799999999831           12 46899999998875    


Q ss_pred             ---------------------C--CCcceeecccCccc
Q 047897           93 ---------------------F--PQFDLVVANIPYGI  107 (232)
Q Consensus        93 ---------------------~--~~~D~Vi~n~p~~~  107 (232)
                                           +  .+||+|+++.+.++
T Consensus        81 ~~~~~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~  118 (201)
T 2plw_A           81 KNINYIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPC  118 (201)
T ss_dssp             -----------CHHHHHHHHHHTTCCEEEEEECCCCCC
T ss_pred             ccccccccccchhhHHHHHhhcCCCcccEEEeCCCcCC
Confidence                                 2  37999999876554

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.94  E-value=4.3e-10  Score=92.35  Aligned_cols=80  Identities=18%  Similarity=0.282  Sum_probs=59.1

Q ss_pred             HHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEc----CHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCCCcc
Q 047897           23 VRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEI----DERMVEILNRRAADSGFHDRLNVISK-DALKTEFPQFD   97 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~----~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~~D   97 (232)
                      .+...+.++.+|||+|||+|.++..+++. .+|+|+|+    ++.+++.+.  ....+. +++.++.+ |+.+++.++||
T Consensus        75 ~~~~~~~~g~~VLDlGcG~G~~s~~la~~-~~V~gvD~~~~~~~~~~~~~~--~~~~~~-~~v~~~~~~D~~~l~~~~fD  150 (305)
T 2p41_A           75 VERNLVTPEGKVVDLGCGRGGWSYYCGGL-KNVREVKGLTKGGPGHEEPIP--MSTYGW-NLVRLQSGVDVFFIPPERCD  150 (305)
T ss_dssp             HHTTSSCCCEEEEEETCTTSHHHHHHHTS-TTEEEEEEECCCSTTSCCCCC--CCSTTG-GGEEEECSCCTTTSCCCCCS
T ss_pred             HHcCCCCCCCEEEEEcCCCCHHHHHHHhc-CCEEEEeccccCchhHHHHHH--hhhcCC-CCeEEEeccccccCCcCCCC
Confidence            44433467889999999999999999987 68999999    554332111  111121 57999999 99988777999


Q ss_pred             eeecccCcc
Q 047897           98 LVVANIPYG  106 (232)
Q Consensus        98 ~Vi~n~p~~  106 (232)
                      +|++|.+.+
T Consensus       151 ~V~sd~~~~  159 (305)
T 2p41_A          151 TLLCDIGES  159 (305)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccc
Confidence            999998754

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.93  E-value=2.8e-09  Score=86.10  Aligned_cols=92  Identities=16%  Similarity=0.277  Sum_probs=63.3

Q ss_pred             cccCCHHHHHHHHHhc-CCCCCCEEEEEcCCccH----hHHHHHhc------CCeEEEEEcCHHHHHHHHHHHhh-----
Q 047897           11 HILTNQRVLDSIVRKS-SINPDDTVLEIGPGTGN----LTLKLLEV------SKKVHAIEIDERMVEILNRRAAD-----   74 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~-~~~~~~~vLDiG~G~G~----~t~~l~~~------~~~v~~vD~~~~~~~~a~~~~~~-----   74 (232)
                      .|+.|+...+.+.+.+ +-.++.+|+|+|||+|.    ++..+++.      +.+|+|+|+|+.+++.|++....     
T Consensus        85 ~FfRd~~~f~~l~~~llp~~~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~  164 (274)
T 1af7_A           85 AFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELK  164 (274)
T ss_dssp             CTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGT
T ss_pred             cccCChHHHHHHHHHccCCCCCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhh
Confidence            3555555554444322 11235689999999998    55556552      35899999999999999987510     


Q ss_pred             ------------------cC---C----CccEEEEEcCCCCCCC---CCcceeecc
Q 047897           75 ------------------SG---F----HDRLNVISKDALKTEF---PQFDLVVAN  102 (232)
Q Consensus        75 ------------------~~---~----~~~~~~~~~D~~~~~~---~~~D~Vi~n  102 (232)
                                        .|   +    ..++.|.++|+.+.++   ++||+|+|.
T Consensus       165 ~~~~~~~~~~f~~~~~~~~~~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~cr  220 (274)
T 1af7_A          165 TLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCR  220 (274)
T ss_dssp             TSCHHHHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEEC
T ss_pred             cCCHHHHHHHhhccccCCCCceeechhhcccCeEEecccCCCCCCcCCCeeEEEEC
Confidence                              00   0    0269999999998544   479999983

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.92  E-value=9.9e-09  Score=85.96  Aligned_cols=91  Identities=14%  Similarity=0.210  Sum_probs=70.6

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      ...+++..+.....+|+|||||+|.++..+++  +..+++..|. |.+++.++++....+ .+|++++.+|+.+.+.+.+
T Consensus       168 ~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~~~  245 (353)
T 4a6d_A          168 GRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLPEA  245 (353)
T ss_dssp             HHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCCCC
T ss_pred             HHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCCCc
Confidence            34555666777788999999999999999998  5678888887 889999999887555 3799999999998777788


Q ss_pred             ceeec-ccCcccchHH
Q 047897           97 DLVVA-NIPYGISSPL  111 (232)
Q Consensus        97 D~Vi~-n~p~~~~~~~  111 (232)
                      |+++. ++-.++..+.
T Consensus       246 D~~~~~~vlh~~~d~~  261 (353)
T 4a6d_A          246 DLYILARVLHDWADGK  261 (353)
T ss_dssp             SEEEEESSGGGSCHHH
T ss_pred             eEEEeeeecccCCHHH
Confidence            98776 4444455443

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=98.91  E-value=8.1e-10  Score=90.05  Aligned_cols=77  Identities=13%  Similarity=0.257  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh------cCCeE--EEEEcCHHHHHHHHHHHhhc-CCCccE--EEEEcCCCCCC-----
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE------VSKKV--HAIEIDERMVEILNRRAADS-GFHDRL--NVISKDALKTE-----   92 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~------~~~~v--~~vD~~~~~~~~a~~~~~~~-~~~~~~--~~~~~D~~~~~-----   92 (232)
                      .++.+|||||||+|.++..++.      ....|  +|+|+|++|++.+++++... +. +++  .+..+|+.+++     
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~  129 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNL-ENVKFAWHKETSSEYQSRMLE  129 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSC-TTEEEEEECSCHHHHHHHHHT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCC-CcceEEEEecchhhhhhhhcc
Confidence            4677999999999987764432      23444  99999999999999998653 33 344  55677776542     


Q ss_pred             ---CCCcceeecccCcc
Q 047897           93 ---FPQFDLVVANIPYG  106 (232)
Q Consensus        93 ---~~~~D~Vi~n~p~~  106 (232)
                         ..+||+|+++...+
T Consensus       130 ~~~~~~fD~V~~~~~l~  146 (292)
T 2aot_A          130 KKELQKWDFIHMIQMLY  146 (292)
T ss_dssp             TTCCCCEEEEEEESCGG
T ss_pred             ccCCCceeEEEEeeeee
Confidence               35799999875544

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.87  E-value=4.9e-09  Score=87.59  Aligned_cols=83  Identities=22%  Similarity=0.310  Sum_probs=62.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      ...+++.+++.++.+|||||||+|.++..+++  +..+++++|+ +.++.  +++....+..++++++.+|+.+ +.++|
T Consensus       173 ~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p~~  248 (348)
T 3lst_A          173 HLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLR-EVPHA  248 (348)
T ss_dssp             HHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTT-CCCCC
T ss_pred             HHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCC-CCCCC
Confidence            34566777778888999999999999999998  4568899999 44544  4444334444689999999973 33389


Q ss_pred             ceeecccCc
Q 047897           97 DLVVANIPY  105 (232)
Q Consensus        97 D~Vi~n~p~  105 (232)
                      |+|+++-..
T Consensus       249 D~v~~~~vl  257 (348)
T 3lst_A          249 DVHVLKRIL  257 (348)
T ss_dssp             SEEEEESCG
T ss_pred             cEEEEehhc
Confidence            999886443

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.86  E-value=8.2e-09  Score=80.39  Aligned_cols=63  Identities=29%  Similarity=0.399  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPY  105 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~  105 (232)
                      +.+|||+|||+|.++..++..    +|+|+++.+++.++++        +++++.+|+.+.+.+  .||+|+++-.+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l  112 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTI  112 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCG
T ss_pred             CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchH
Confidence            779999999999999988765    9999999999999886        378999999887764  79999987543

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.84  E-value=2.5e-08  Score=80.08  Aligned_cols=92  Identities=13%  Similarity=0.119  Sum_probs=62.7

Q ss_pred             HHHHHHHHHhcCCC-CCCEEEEEcCCc--cHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           16 QRVLDSIVRKSSIN-PDDTVLEIGPGT--GNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        16 ~~~~~~i~~~~~~~-~~~~vLDiG~G~--G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +..+.+.++.+... ....+||||||+  |..+..+++   ...+|+++|.|+.|++.+++++...+. .+++++++|+.
T Consensus        63 r~fl~rav~~l~~~~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~-~~~~~v~aD~~  141 (277)
T 3giw_A           63 RDWMNRAVAHLAKEAGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPE-GRTAYVEADML  141 (277)
T ss_dssp             HHHHHHHHHHHHHTSCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSS-SEEEEEECCTT
T ss_pred             HHHHHHHHHHhccccCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCC-CcEEEEEeccc
Confidence            33444444444322 336899999997  444555544   578999999999999999999875432 57999999998


Q ss_pred             CCC--------CCCcc-----eeecccCcccc
Q 047897           90 KTE--------FPQFD-----LVVANIPYGIS  108 (232)
Q Consensus        90 ~~~--------~~~~D-----~Vi~n~p~~~~  108 (232)
                      +.+        ...||     .|++|-..|+.
T Consensus       142 ~~~~~l~~~~~~~~~D~~~p~av~~~avLH~l  173 (277)
T 3giw_A          142 DPASILDAPELRDTLDLTRPVALTVIAIVHFV  173 (277)
T ss_dssp             CHHHHHTCHHHHTTCCTTSCCEEEEESCGGGS
T ss_pred             ChhhhhcccccccccCcCCcchHHhhhhHhcC
Confidence            752        12344     57777666544

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=98.84  E-value=2.8e-10  Score=97.30  Aligned_cols=87  Identities=14%  Similarity=0.124  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE-EEEEcCCCCCC--
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL-NVISKDALKTE--   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~D~~~~~--   92 (232)
                      ...++.+++.+.+.++.+|||||||+|.++..+++.+.+|+|+|+|+.+++.|+++    +.+... .+..+|+.+++  
T Consensus        93 ~~~~~~l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~  168 (416)
T 4e2x_A           93 AMLARDFLATELTGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRT  168 (416)
T ss_dssp             HHHHHHHHHTTTCSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccC
Confidence            34566777778878889999999999999999999888999999999999999876    221111 12223333333  


Q ss_pred             CCCcceeecccCcc
Q 047897           93 FPQFDLVVANIPYG  106 (232)
Q Consensus        93 ~~~~D~Vi~n~p~~  106 (232)
                      ..+||+|+++-.++
T Consensus       169 ~~~fD~I~~~~vl~  182 (416)
T 4e2x_A          169 EGPANVIYAANTLC  182 (416)
T ss_dssp             HCCEEEEEEESCGG
T ss_pred             CCCEEEEEECChHH
Confidence            24799999875543

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.81  E-value=1.8e-08  Score=77.45  Aligned_cols=72  Identities=18%  Similarity=0.234  Sum_probs=57.5

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCC--CccEEEEEcCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGF--HDRLNVISKDALK   90 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~   90 (232)
                      ++...+.+...+  .+..+|||+||  |+-|..+++. +.+|+++|.|+++.+.+++++...|+  .++++++.+|+.+
T Consensus        17 ~~~~~~~L~~~l--~~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           17 PPAEAEALRMAY--EEAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             CHHHHHHHHHHH--HHCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             CHHHHHHHHHHh--hCCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            444444443333  45679999998  4777777774 68999999999999999999999987  6799999999765

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.78  E-value=1.2e-08  Score=73.44  Aligned_cols=80  Identities=19%  Similarity=0.221  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCcc-HhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTG-NLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G-~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      +..+++.|.+...  ++++|||||||+| ..+..|++ .+..|+++|+++..++                ++.+|+.+..
T Consensus        22 ~e~LaeYI~~~~~--~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av~----------------~v~dDiF~P~   83 (153)
T 2k4m_A           22 WNDLAVYIIRCSG--PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHGG----------------IVRDDITSPR   83 (153)
T ss_dssp             HHHHHHHHHHHSC--SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSSTT----------------EECCCSSSCC
T ss_pred             HHHHHHHHHhcCC--CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccccc----------------eEEccCCCCc
Confidence            4567777777663  5679999999999 59999997 8899999999986543                8889999876


Q ss_pred             C---CCcceee-cccCcccchHHH
Q 047897           93 F---PQFDLVV-ANIPYGISSPLV  112 (232)
Q Consensus        93 ~---~~~D~Vi-~n~p~~~~~~~l  112 (232)
                      .   ..+|+|. .|+|--...+++
T Consensus        84 ~~~Y~~~DLIYsirPP~El~~~i~  107 (153)
T 2k4m_A           84 MEIYRGAALIYSIRPPAEIHSSLM  107 (153)
T ss_dssp             HHHHTTEEEEEEESCCTTTHHHHH
T ss_pred             ccccCCcCEEEEcCCCHHHHHHHH
Confidence            5   3799994 588865555443

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.77  E-value=1.2e-08  Score=85.93  Aligned_cols=77  Identities=13%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             HHHHHhcC-CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           20 DSIVRKSS-INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        20 ~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      ..+++.++ +.++.+|||||||+|.++..+++  ...+++++|+ +.+++.+++.       ++++++.+|+.+ +.+.+
T Consensus       198 ~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~~~~  268 (372)
T 1fp1_D          198 KRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL-------SGIEHVGGDMFA-SVPQG  268 (372)
T ss_dssp             HHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCE
T ss_pred             HHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc-------CCCEEEeCCccc-CCCCC
Confidence            45556664 66778999999999999999998  3568899999 9998876641       469999999988 56669


Q ss_pred             ceeecccCc
Q 047897           97 DLVVANIPY  105 (232)
Q Consensus        97 D~Vi~n~p~  105 (232)
                      |+|+++...
T Consensus       269 D~v~~~~~l  277 (372)
T 1fp1_D          269 DAMILKAVC  277 (372)
T ss_dssp             EEEEEESSG
T ss_pred             CEEEEeccc
Confidence            999986543

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.77  E-value=1.1e-08  Score=85.51  Aligned_cols=70  Identities=20%  Similarity=0.327  Sum_probs=57.3

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP  104 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p  104 (232)
                      ++.++.+|||||||+|.++..+++  ++.+++++|+ +.+++.+++.       ++++++.+|+.+ +.+.||+|+++..
T Consensus       185 ~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~D~v~~~~~  255 (352)
T 1fp2_A          185 VFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS-------NNLTYVGGDMFT-SIPNADAVLLKYI  255 (352)
T ss_dssp             HHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB-------TTEEEEECCTTT-CCCCCSEEEEESC
T ss_pred             ccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC-------CCcEEEeccccC-CCCCccEEEeehh
Confidence            345678999999999999999998  3679999999 9998877651       359999999987 5567999998654


Q ss_pred             c
Q 047897          105 Y  105 (232)
Q Consensus       105 ~  105 (232)
                      .
T Consensus       256 l  256 (352)
T 1fp2_A          256 L  256 (352)
T ss_dssp             G
T ss_pred             h
Confidence            3

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.75  E-value=2.6e-08  Score=75.91  Aligned_cols=68  Identities=12%  Similarity=0.228  Sum_probs=53.4

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc-C----------CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE-EcCCCCCC---
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV-S----------KKVHAIEIDERMVEILNRRAADSGFHDRLNVI-SKDALKTE---   92 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~-~----------~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~D~~~~~---   92 (232)
                      +.++.+|||+|||+|.++..+++. +          .+|+|+|+++..           .. .+++++ .+|+.+.+   
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHH
Confidence            567899999999999999999984 3          789999999831           12 468899 99987643   


Q ss_pred             -------CCCcceeecccCccc
Q 047897           93 -------FPQFDLVVANIPYGI  107 (232)
Q Consensus        93 -------~~~~D~Vi~n~p~~~  107 (232)
                             ..+||+|+++.+.+.
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNA  109 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCC
Confidence                   237999999875443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.75  E-value=2.4e-08  Score=84.01  Aligned_cols=77  Identities=13%  Similarity=0.225  Sum_probs=60.0

Q ss_pred             HHHHHhcC-CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           20 DSIVRKSS-INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        20 ~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      ..+++.++ ..++.+|||||||+|.++..+++  +..+++++|+ +.+++.++++       ++++++.+|+.+ +.+.-
T Consensus       192 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~d~~~-~~p~~  262 (368)
T 3reo_A          192 KKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF-------SGVEHLGGDMFD-GVPKG  262 (368)
T ss_dssp             HHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCCC
T ss_pred             HHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc-------CCCEEEecCCCC-CCCCC
Confidence            44555555 56778999999999999999998  5678999999 8888776532       579999999987 55544


Q ss_pred             ceeecccCc
Q 047897           97 DLVVANIPY  105 (232)
Q Consensus        97 D~Vi~n~p~  105 (232)
                      |+|++....
T Consensus       263 D~v~~~~vl  271 (368)
T 3reo_A          263 DAIFIKWIC  271 (368)
T ss_dssp             SEEEEESCG
T ss_pred             CEEEEechh
Confidence            998876543

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.74  E-value=3.2e-08  Score=83.18  Aligned_cols=77  Identities=13%  Similarity=0.200  Sum_probs=60.8

Q ss_pred             HHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           19 LDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ...+++.++ ..+..+|||||||+|.++..+++  +..+++++|+ +.+++.+++.       ++++++.+|+.+ +.+.
T Consensus       189 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~-------~~v~~~~~D~~~-~~p~  259 (364)
T 3p9c_A          189 TKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF-------PGVTHVGGDMFK-EVPS  259 (364)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC-------TTEEEEECCTTT-CCCC
T ss_pred             HHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc-------CCeEEEeCCcCC-CCCC
Confidence            445666665 66778999999999999999998  5678999999 8888766532       579999999987 5554


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      -|+|++.-.
T Consensus       260 ~D~v~~~~v  268 (364)
T 3p9c_A          260 GDTILMKWI  268 (364)
T ss_dssp             CSEEEEESC
T ss_pred             CCEEEehHH
Confidence            498887543

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.69  E-value=2.5e-08  Score=88.84  Aligned_cols=72  Identities=19%  Similarity=0.293  Sum_probs=59.8

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCC--eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeeccc
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANI  103 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~  103 (232)
                      +..|||+|||+|-+....++    .+.  +|+|||.++ ++..+++....+++.++++++++|++++..+ ++|+||+-.
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEw  436 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSEL  436 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEc
Confidence            45799999999999555554    222  689999997 6778888998889989999999999998876 899999853

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.66  E-value=1.1e-07  Score=77.78  Aligned_cols=61  Identities=21%  Similarity=0.253  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      .+..+++.+++... .+++.|||++||+|..+.+++..+.+++|+|+++.+++.|++++...
T Consensus       220 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          220 FPLELAERLVRMFS-FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             SCHHHHHHHHHHHC-CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            35688999998876 67899999999999999999999999999999999999999999765

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.65  E-value=2.4e-08  Score=83.61  Aligned_cols=77  Identities=21%  Similarity=0.335  Sum_probs=60.1

Q ss_pred             HHHHhc--CCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCc
Q 047897           21 SIVRKS--SINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQF   96 (232)
Q Consensus        21 ~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~   96 (232)
                      .+++..  ++.++.+|||||||+|.++..+++  ...+++++|+ +.+++.+++      . ++++++.+|+.+ +.+.+
T Consensus       182 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~~~  252 (358)
T 1zg3_A          182 LVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIPSA  252 (358)
T ss_dssp             HHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCCCC
T ss_pred             HHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCCCc
Confidence            344444  344668999999999999999998  3568999999 788876654      1 469999999988 66689


Q ss_pred             ceeecccCcc
Q 047897           97 DLVVANIPYG  106 (232)
Q Consensus        97 D~Vi~n~p~~  106 (232)
                      |+|+++..++
T Consensus       253 D~v~~~~vlh  262 (358)
T 1zg3_A          253 DAVLLKWVLH  262 (358)
T ss_dssp             SEEEEESCGG
T ss_pred             eEEEEccccc
Confidence            9999876544

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.64  E-value=2.6e-08  Score=77.17  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=49.3

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPY  105 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~  105 (232)
                      ..++.+|||+|||+|.++..+.   .+++|+|+++.                +++++.+|+.+.+.+  +||+|+++..+
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l  125 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIR---NPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSL  125 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCC
T ss_pred             cCCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhc
Confidence            3567899999999999998873   79999999987                356889999887654  79999987665


Q ss_pred             c
Q 047897          106 G  106 (232)
Q Consensus       106 ~  106 (232)
                      +
T Consensus       126 ~  126 (215)
T 2zfu_A          126 M  126 (215)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.60  E-value=5.3e-08  Score=81.37  Aligned_cols=92  Identities=21%  Similarity=0.242  Sum_probs=75.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCC-----ccEEEEEcCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFH-----DRLNVISKDAL   89 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~-----~~~~~~~~D~~   89 (232)
                      ......+..+++++|++|||+++|+|+-|..+++.  ...|+++|+++.-++.+++++...+..     .++.+...|+.
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            33344456678899999999999999999999884  357999999999999999999876542     47899999998


Q ss_pred             CCC---CCCcceeecccCcccc
Q 047897           90 KTE---FPQFDLVVANIPYGIS  108 (232)
Q Consensus        90 ~~~---~~~~D~Vi~n~p~~~~  108 (232)
                      .++   ...||.|+.+.|...+
T Consensus       215 ~~~~~~~~~fD~VLlDaPCSg~  236 (359)
T 4fzv_A          215 KWGELEGDTYDRVLVDVPCTTD  236 (359)
T ss_dssp             GHHHHSTTCEEEEEEECCCCCH
T ss_pred             hcchhccccCCEEEECCccCCC
Confidence            763   3479999999998754

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.56  E-value=7.1e-08  Score=79.10  Aligned_cols=91  Identities=16%  Similarity=0.233  Sum_probs=74.0

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      |.+-|-+++++++.+.+.+++.++|..||.|+.|..+++.   ..+|+|+|.|+.+++.++ ++  .  .++++++++++
T Consensus        39 ~~H~pVLl~Evl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL--~--~~Rv~lv~~nF  113 (347)
T 3tka_A           39 YKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI--D--DPRFSIIHGPF  113 (347)
T ss_dssp             ---CCTTTHHHHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC--C--CTTEEEEESCG
T ss_pred             CCcccccHHHHHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh--c--CCcEEEEeCCH
Confidence            4456788999999999999999999999999999999983   479999999999999984 44  1  26899999999


Q ss_pred             CCCC-------CC-CcceeecccCccc
Q 047897           89 LKTE-------FP-QFDLVVANIPYGI  107 (232)
Q Consensus        89 ~~~~-------~~-~~D~Vi~n~p~~~  107 (232)
                      .++.       .. ++|.|+.|+.+..
T Consensus       114 ~~l~~~L~~~g~~~~vDgILfDLGVSS  140 (347)
T 3tka_A          114 SALGEYVAERDLIGKIDGILLDLGVSS  140 (347)
T ss_dssp             GGHHHHHHHTTCTTCEEEEEEECSCCH
T ss_pred             HHHHHHHHhcCCCCcccEEEECCccCH
Confidence            8762       12 5899999987653

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.52  E-value=1.2e-07  Score=79.83  Aligned_cols=78  Identities=26%  Similarity=0.375  Sum_probs=59.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCC------ccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPG------TGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK   86 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G------~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~   86 (232)
                      ....+++++.+. .++.+|||||||      +|..+..+++   ...+|+|+|+++.+.      .  .  .++++++++
T Consensus       203 ~~~Ye~lL~~l~-~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~------~--~--~~rI~fv~G  271 (419)
T 3sso_A          203 TPHYDRHFRDYR-NQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH------V--D--ELRIRTIQG  271 (419)
T ss_dssp             HHHHHHHHGGGT-TSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG------G--C--BTTEEEEEC
T ss_pred             HHHHHHHHHhhc-CCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh------h--c--CCCcEEEEe
Confidence            456777776664 346799999999      7777777775   368999999999972      1  1  268999999


Q ss_pred             CCCCCCC--------CCcceeecccC
Q 047897           87 DALKTEF--------PQFDLVVANIP  104 (232)
Q Consensus        87 D~~~~~~--------~~~D~Vi~n~p  104 (232)
                      |+.++++        .+||+|+++..
T Consensus       272 Da~dlpf~~~l~~~d~sFDlVisdgs  297 (419)
T 3sso_A          272 DQNDAEFLDRIARRYGPFDIVIDDGS  297 (419)
T ss_dssp             CTTCHHHHHHHHHHHCCEEEEEECSC
T ss_pred             cccccchhhhhhcccCCccEEEECCc
Confidence            9988643        47999999754

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.48  E-value=2.6e-07  Score=76.95  Aligned_cols=83  Identities=16%  Similarity=0.257  Sum_probs=62.5

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPY  105 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~  105 (232)
                      +.+|.+|||+||++|+.|..+++.+.+|+|||..+ |-..+    ...   ++++++++|+..+..+  ++|+|+|++..
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~l----~~~---~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQSL----MDT---GQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHHH----HTT---TCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChhh----ccC---CCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            46899999999999999999999999999999754 22221    111   6799999999987654  79999999866


Q ss_pred             ccc--hHHHHHHhcC
Q 047897          106 GIS--SPLVAKLVYG  118 (232)
Q Consensus       106 ~~~--~~~l~~~~~~  118 (232)
                      +..  ...+..++..
T Consensus       281 ~p~~~~~l~~~wl~~  295 (375)
T 4auk_A          281 KPAKVAALMAQWLVN  295 (375)
T ss_dssp             CHHHHHHHHHHHHHT
T ss_pred             ChHHhHHHHHHHHhc
Confidence            554  2334444443

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.45  E-value=1.4e-07  Score=84.31  Aligned_cols=73  Identities=19%  Similarity=0.284  Sum_probs=56.7

Q ss_pred             CCEEEEEcCCccHhHHHHHh---c------------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897           31 DDTVLEIGPGTGNLTLKLLE---V------------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--   93 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~---~------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--   93 (232)
                      +..|||+|||+|.++...+.   .            ..+|+|||.++.++..++.... +++.++++++++|+.++..  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            45799999999999754322   1            2399999999987766666554 6777789999999999865  


Q ss_pred             -----CCcceeecccC
Q 047897           94 -----PQFDLVVANIP  104 (232)
Q Consensus        94 -----~~~D~Vi~n~p  104 (232)
                           ++.|+||+-+.
T Consensus       489 ~~~~~ekVDIIVSElm  504 (745)
T 3ua3_A          489 KDRGFEQPDIIVSELL  504 (745)
T ss_dssp             HHTTCCCCSEEEECCC
T ss_pred             ccCCCCcccEEEEecc
Confidence                 48999999654

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.42  E-value=2.6e-07  Score=75.07  Aligned_cols=65  Identities=11%  Similarity=0.229  Sum_probs=49.5

Q ss_pred             cCCCCCCEEEEEcC------CccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEE-EEcCCCCCCCC-
Q 047897           26 SSINPDDTVLEIGP------GTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNV-ISKDALKTEFP-   94 (232)
Q Consensus        26 ~~~~~~~~vLDiG~------G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~-~~~D~~~~~~~-   94 (232)
                      +.+.++.+|||+||      |+|.  ..+++   ...+|+|+|+++.        .      +++++ +++|+.+.+.+ 
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v------~~v~~~i~gD~~~~~~~~  122 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V------SDADSTLIGDCATVHTAN  122 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B------CSSSEEEESCGGGCCCSS
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C------CCCEEEEECccccCCccC
Confidence            35678899999999      4476  33333   2579999999997        1      35788 99999987654 


Q ss_pred             CcceeecccCcc
Q 047897           95 QFDLVVANIPYG  106 (232)
Q Consensus        95 ~~D~Vi~n~p~~  106 (232)
                      +||+|++|++.+
T Consensus       123 ~fD~Vvsn~~~~  134 (290)
T 2xyq_A          123 KWDLIISDMYDP  134 (290)
T ss_dssp             CEEEEEECCCCC
T ss_pred             cccEEEEcCCcc
Confidence            799999997533

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=98.38  E-value=1e-06  Score=70.49  Aligned_cols=62  Identities=21%  Similarity=0.335  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG   76 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~   76 (232)
                      .+..+++.+++... .+++.|||..||+|..+.++.+.+.+++|+|+++..++.+++++...+
T Consensus       197 ~p~~l~~~~i~~~~-~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~~r~~~~~  258 (260)
T 1g60_A          197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLNQLE  258 (260)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcc
Confidence            35678899988775 688999999999999999999999999999999999999999997644

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.38  E-value=1.7e-06  Score=70.09  Aligned_cols=77  Identities=19%  Similarity=0.348  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc--C--CCccEEEEEcCCCCCCC---CCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS--G--FHDRLNVISKDALKTEF---PQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~~~~~~~D~~~~~~---~~~D~V   99 (232)
                      ....+||=||.|.|..++++++  ...+|+.||+|+.+++.+++.+...  +  .++|++++.+|+..+-.   ..||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            3457899999999999999998  3579999999999999999987532  1  13799999999988643   379999


Q ss_pred             ecccCc
Q 047897          100 VANIPY  105 (232)
Q Consensus       100 i~n~p~  105 (232)
                      +.+++-
T Consensus       162 i~D~~d  167 (294)
T 3o4f_A          162 ISDCTD  167 (294)
T ss_dssp             EESCCC
T ss_pred             EEeCCC
Confidence            998753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=98.20  E-value=1.4e-07  Score=75.68  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC------CCCCcceeecccC
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT------EFPQFDLVVANIP  104 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~------~~~~~D~Vi~n~p  104 (232)
                      +..+||+-+|+|.++..+++.+.+++.+|.++..++..++|+..   .+++++++.|+...      +.+.||+|+.+||
T Consensus        92 ~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPP  168 (283)
T 2oo3_A           92 LNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPS  168 (283)
T ss_dssp             SSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECCC
T ss_pred             CCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECCC
Confidence            45689999999999999999889999999999999999999975   26799999997652      2236999999999


Q ss_pred             cccc
Q 047897          105 YGIS  108 (232)
Q Consensus       105 ~~~~  108 (232)
                      |...
T Consensus       169 Ye~k  172 (283)
T 2oo3_A          169 YERK  172 (283)
T ss_dssp             CCST
T ss_pred             CCCC
Confidence            9953

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=98.08  E-value=1.5e-05  Score=61.93  Aligned_cols=88  Identities=16%  Similarity=0.219  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~   95 (232)
                      +..|.+...+.++.+|+|+||++|..+..++.  ...+|+|+|+-..-.+. -......|+ +.++|..+ |+...+..+
T Consensus        67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gw-n~v~fk~gvDv~~~~~~~  144 (267)
T 3p8z_A           67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGW-NIVKLMSGKDVFYLPPEK  144 (267)
T ss_dssp             HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTT-TSEEEECSCCGGGCCCCC
T ss_pred             HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCc-CceEEEeccceeecCCcc
Confidence            34555666678899999999999999997777  34689999987542210 001123455 47999999 987776678


Q ss_pred             cceeecccCcccc
Q 047897           96 FDLVVANIPYGIS  108 (232)
Q Consensus        96 ~D~Vi~n~p~~~~  108 (232)
                      +|.|+|++-=...
T Consensus       145 ~DtllcDIgeSs~  157 (267)
T 3p8z_A          145 CDTLLCDIGESSP  157 (267)
T ss_dssp             CSEEEECCCCCCS
T ss_pred             ccEEEEecCCCCC
Confidence            9999999733333

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=98.06  E-value=7e-06  Score=65.74  Aligned_cols=85  Identities=16%  Similarity=0.208  Sum_probs=59.4

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCCC
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~   95 (232)
                      +..|.+...+.++.+|||+||++|..+..++.  ...+|+|+|+-..-.+.= ......+. .-+.++.+ |+..++..+
T Consensus        83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w-~lV~~~~~~Dv~~l~~~~  160 (321)
T 3lkz_A           83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGW-NIVTMKSGVDVFYRPSEC  160 (321)
T ss_dssp             HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTG-GGEEEECSCCTTSSCCCC
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCC-cceEEEeccCHhhCCCCC
Confidence            34555666678889999999999999997776  346799999876411000 00012222 34888888 987777678


Q ss_pred             cceeecccCc
Q 047897           96 FDLVVANIPY  105 (232)
Q Consensus        96 ~D~Vi~n~p~  105 (232)
                      +|.|+|++--
T Consensus       161 ~D~ivcDige  170 (321)
T 3lkz_A          161 CDTLLCDIGE  170 (321)
T ss_dssp             CSEEEECCCC
T ss_pred             CCEEEEECcc
Confidence            9999999863

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.01  E-value=1.6e-06  Score=64.84  Aligned_cols=60  Identities=13%  Similarity=0.161  Sum_probs=49.1

Q ss_pred             cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---C--Ccceee
Q 047897           26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---P--QFDLVV  100 (232)
Q Consensus        26 ~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~--~~D~Vi  100 (232)
                      +++.+|++|||+|||.              +++|+++.|++.|+++..     .+++++.+|+.+++.   +  +||+|+
T Consensus         8 ~g~~~g~~vL~~~~g~--------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~   68 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS--------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIIL   68 (176)
T ss_dssp             TTCCTTSEEEEEECTT--------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred             cCCCCCCEEEEecCCc--------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEE
Confidence            4567899999999996              239999999999999864     248899999988765   3  799999


Q ss_pred             cccC
Q 047897          101 ANIP  104 (232)
Q Consensus       101 ~n~p  104 (232)
                      ++..
T Consensus        69 ~~~~   72 (176)
T 2ld4_A           69 SGLV   72 (176)
T ss_dssp             ECCS
T ss_pred             ECCh
Confidence            8654

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.98  E-value=1.6e-05  Score=66.98  Aligned_cols=70  Identities=19%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             CEEEEEcCCccHhHHHHHhcCCe-EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----------CCCcceee
Q 047897           32 DTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----------FPQFDLVV  100 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----------~~~~D~Vi  100 (232)
                      .+++|+.||.|.++..+.+.+.+ |.++|+|+.+++..+.|+      ++..++++|+.++.          ...+|+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~   76 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGII   76 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEEE
Confidence            47999999999999999886665 569999999999998886      35678899998873          24789999


Q ss_pred             cccCccc
Q 047897          101 ANIPYGI  107 (232)
Q Consensus       101 ~n~p~~~  107 (232)
                      +.+|+..
T Consensus        77 ggpPCQ~   83 (376)
T 3g7u_A           77 GGPPCQG   83 (376)
T ss_dssp             ECCCCCT
T ss_pred             ecCCCCC
Confidence            9999653

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.95  E-value=8e-06  Score=65.10  Aligned_cols=83  Identities=12%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC--CCCCCCCc
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA--LKTEFPQF   96 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~--~~~~~~~~   96 (232)
                      ++.+...+.++.+|||+|||+|..+..++..  ...+.|+|+.-++....... ...+  .++..+.+++  ..++...+
T Consensus        65 ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~  141 (277)
T 3evf_A           65 WFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDIHRLEPVKC  141 (277)
T ss_dssp             HHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCTTTSCCCCC
T ss_pred             HHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEeccceehhcCCCCc
Confidence            3444555678889999999999999988763  45788888875431000000 0011  1344556654  33444589


Q ss_pred             ceeecccCcc
Q 047897           97 DLVVANIPYG  106 (232)
Q Consensus        97 D~Vi~n~p~~  106 (232)
                      |+|++++.-+
T Consensus       142 DlVlsD~apn  151 (277)
T 3evf_A          142 DTLLCDIGES  151 (277)
T ss_dssp             SEEEECCCCC
T ss_pred             cEEEecCccC
Confidence            9999998544

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.95  E-value=7.1e-06  Score=68.27  Aligned_cols=69  Identities=22%  Similarity=0.331  Sum_probs=56.8

Q ss_pred             CEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---C--Ccceeeccc
Q 047897           32 DTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---P--QFDLVVANI  103 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~--~~D~Vi~n~  103 (232)
                      .+|+|+.||.|.++..+...+   ..|+++|+|+.+++..+.|+.      +..++++|+.++..   +  .+|+|++++
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~gp   76 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEEcC
Confidence            479999999999999998865   368999999999999999973      34578899988753   1  589999999


Q ss_pred             Ccc
Q 047897          104 PYG  106 (232)
Q Consensus       104 p~~  106 (232)
                      |+.
T Consensus        77 PCq   79 (343)
T 1g55_A           77 PCQ   79 (343)
T ss_dssp             C--
T ss_pred             CCc
Confidence            954

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.93  E-value=5.2e-06  Score=66.29  Aligned_cols=83  Identities=22%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE-c-CCCCCCCCCc
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS-K-DALKTEFPQF   96 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~-~-D~~~~~~~~~   96 (232)
                      +|.+...+.++.+|||+|||+|.++..++.  ....|+|+|+...+...+... ...+  .++.... . |+..++...+
T Consensus        81 ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g--~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           81 WMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG--WNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT--GGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC--CceEEeeCCcchhhcCCCCc
Confidence            444555677888999999999999998886  346789999976532211100 0111  2333333 2 5555555689


Q ss_pred             ceeecccCcc
Q 047897           97 DLVVANIPYG  106 (232)
Q Consensus        97 D~Vi~n~p~~  106 (232)
                      |+|+|++.-+
T Consensus       158 DvVLSDmApn  167 (282)
T 3gcz_A          158 DTLLCDIGES  167 (282)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEecCccC
Confidence            9999998655

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.89  E-value=1.7e-05  Score=66.36  Aligned_cols=75  Identities=21%  Similarity=0.386  Sum_probs=60.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcC---C----CccEEEEEcCCCCCC------CCC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSG---F----HDRLNVISKDALKTE------FPQ   95 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~---~----~~~~~~~~~D~~~~~------~~~   95 (232)
                      +..+||=||.|.|..++++++ ...+|+.||+|+.+++.|++.+....   +    .++++++.+|+.++-      ...
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            457999999999999999998 56789999999999999999874311   1    146899999997652      237


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      ||+||.+++
T Consensus       285 yDvIIvDl~  293 (381)
T 3c6k_A          285 FDYVINDLT  293 (381)
T ss_dssp             EEEEEEECC
T ss_pred             eeEEEECCC
Confidence            999999864

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=97.75  E-value=4.9e-05  Score=62.76  Aligned_cols=70  Identities=19%  Similarity=0.237  Sum_probs=56.9

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCcc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPYG  106 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~~  106 (232)
                      +.+++|+.||.|.++..+...+. .|.++|+|+.+++..+.|+...      .  ++|+.++..   +.+|+|++++|+.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~------~--~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK------P--EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC------C--BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC------C--cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            46899999999999999988665 4678999999999999997431      1  688887643   4689999999986


Q ss_pred             cc
Q 047897          107 IS  108 (232)
Q Consensus       107 ~~  108 (232)
                      .-
T Consensus        83 ~f   84 (327)
T 2c7p_A           83 AF   84 (327)
T ss_dssp             TT
T ss_pred             Cc
Confidence            43

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.70  E-value=1.4e-05  Score=62.89  Aligned_cols=84  Identities=14%  Similarity=0.179  Sum_probs=50.9

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEEEc-CCCCCCCCCc
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVISK-DALKTEFPQF   96 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~-D~~~~~~~~~   96 (232)
                      +|-+..-++++.+|+|+||++|..+..+++.  ...|.|..+..+. .. ...... .|+ .=+.+..+ |+.+.+...+
T Consensus        64 EIdeK~likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~-~P~~~~~~Gv-~~i~~~~G~Df~~~~~~~~  140 (269)
T 2px2_A           64 WLVERRFVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HE-EPMLMQSYGW-NIVTMKSGVDVFYKPSEIS  140 (269)
T ss_dssp             HHHHTTSCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SC-CCCCCCSTTG-GGEEEECSCCGGGSCCCCC
T ss_pred             HHHHcCCCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-cc-CCCcccCCCc-eEEEeeccCCccCCCCCCC
Confidence            3444444678999999999999999999885  3344444443221 00 000000 111 11355557 9998765689


Q ss_pred             ceeecccCccc
Q 047897           97 DLVVANIPYGI  107 (232)
Q Consensus        97 D~Vi~n~p~~~  107 (232)
                      |+|+|++.=+.
T Consensus       141 DvVLSDMAPnS  151 (269)
T 2px2_A          141 DTLLCDIGESS  151 (269)
T ss_dssp             SEEEECCCCCC
T ss_pred             CEEEeCCCCCC
Confidence            99999973343

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.68  E-value=2.4e-05  Score=62.33  Aligned_cols=75  Identities=19%  Similarity=0.072  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--------------CCeEEEEEcCH--------------HHHHHHHHHHhhcC----
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--------------SKKVHAIEIDE--------------RMVEILNRRAADSG----   76 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--------------~~~v~~vD~~~--------------~~~~~a~~~~~~~~----   76 (232)
                      .+..+|||||+|+|..+..+++.              ..+++++|.++              ++.+.+++++..+.    
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34568999999999988776541              14899999887              44446777765410    


Q ss_pred             ------CC---ccEEEEEcCCCCC-CC------CCcceeeccc
Q 047897           77 ------FH---DRLNVISKDALKT-EF------PQFDLVVANI  103 (232)
Q Consensus        77 ------~~---~~~~~~~~D~~~~-~~------~~~D~Vi~n~  103 (232)
                            +.   .+++++.||+.+. +.      ..||+|+.+.
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence                  11   4688999999773 21      1699999874

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=97.65  E-value=8.9e-05  Score=61.10  Aligned_cols=62  Identities=23%  Similarity=0.252  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG   76 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~   76 (232)
                      .+..+++.+++... .+|+.|||..||+|..+.+....+.+.+|+|+++..++.+++++...+
T Consensus       237 kp~~l~~~~i~~~~-~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~~r~~~~~  298 (323)
T 1boo_A          237 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDNN  298 (323)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhcc
Confidence            45688999987763 688999999999999999999999999999999999999999987655

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=97.62  E-value=0.00013  Score=59.32  Aligned_cols=73  Identities=21%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCe---EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------CCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKK---VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------PQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~---v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------~~~D~V   99 (232)
                      ..+.+++|+.||.|.++..+.+.+.+   |.++|+|+..++..+.|+      +...++.+|+.++..      +.+|++
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~~~~~Dll   87 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQEWGPFDLV   87 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcccCCcCEE
Confidence            34568999999999999999886654   589999999998888776      235688999988753      258999


Q ss_pred             ecccCccc
Q 047897          100 VANIPYGI  107 (232)
Q Consensus       100 i~n~p~~~  107 (232)
                      ++.+|+..
T Consensus        88 ~ggpPCQ~   95 (295)
T 2qrv_A           88 IGGSPCND   95 (295)
T ss_dssp             EECCCCGG
T ss_pred             EecCCCcc
Confidence            99998754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=97.60  E-value=0.00013  Score=60.05  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=53.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCH---HHHHHHHHHHhhcC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDE---RMVEILNRRAADSG   76 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~---~~~~~a~~~~~~~~   76 (232)
                      .+..+++.+++... .+++.|||.-||+|..+.+....+.+.+|+|+++   ..++.+++++...+
T Consensus       227 kp~~l~~~~i~~~~-~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          227 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHhC-CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            56889999998764 6789999999999999999999999999999999   99999999987544

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.47  E-value=0.00028  Score=56.85  Aligned_cols=75  Identities=9%  Similarity=0.067  Sum_probs=58.3

Q ss_pred             CCCEEEEEcCCccHhHHHHHh-------cCCeEEEEEcCHH--------------------------HHHHHHHHHhhcC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE-------VSKKVHAIEIDER--------------------------MVEILNRRAADSG   76 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~-------~~~~v~~vD~~~~--------------------------~~~~a~~~~~~~~   76 (232)
                      ....|||+|+..|.-+..++.       ...+|+++|..+.                          .++.+++++...|
T Consensus       106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g  185 (282)
T 2wk1_A          106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD  185 (282)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred             CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence            345899999999998887765       1678999996421                          4677899999998


Q ss_pred             CC-ccEEEEEcCCCCC-C---CCCcceeecccC
Q 047897           77 FH-DRLNVISKDALKT-E---FPQFDLVVANIP  104 (232)
Q Consensus        77 ~~-~~~~~~~~D~~~~-~---~~~~D~Vi~n~p  104 (232)
                      +. ++++++.||+.+. +   ..++|+|+.+.-
T Consensus       186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD  218 (282)
T ss_dssp             CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC
T ss_pred             CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC
Confidence            84 7999999999763 2   237899998753

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=97.44  E-value=0.00023  Score=58.65  Aligned_cols=71  Identities=17%  Similarity=0.140  Sum_probs=57.1

Q ss_pred             CCEEEEEcCCccHhHHHHHhcC---CeE-EEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----Ccceeec
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVS---KKV-HAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVA  101 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~---~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~  101 (232)
                      .-+++|+.||.|.++..+.+.+   ..| .++|+|+.+++..+.|+..      . ++++|+.++...     .+|++++
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~------~-~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE------E-VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC------C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC------C-cccCChhhcCHHHhccCCCCEEEe
Confidence            4589999999999999998865   456 6999999999999998732      2 678899887532     5899999


Q ss_pred             ccCcccc
Q 047897          102 NIPYGIS  108 (232)
Q Consensus       102 n~p~~~~  108 (232)
                      .+|...-
T Consensus        83 gpPCQ~f   89 (327)
T 3qv2_A           83 SPPCQPY   89 (327)
T ss_dssp             CCCCTTC
T ss_pred             cCCccCc
Confidence            9996544

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=97.41  E-value=0.00015  Score=60.00  Aligned_cols=70  Identities=16%  Similarity=0.266  Sum_probs=56.7

Q ss_pred             CEEEEEcCCccHhHHHHHhcC---CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----Ccceeeccc
Q 047897           32 DTVLEIGPGTGNLTLKLLEVS---KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVANI  103 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~n~  103 (232)
                      -+++|+.||.|.++..+.+.+   .-|.++|+|+.+++..+.|+.      ...++.+|+.++...     .+|++++.+
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~------~~~~~~~DI~~~~~~~~~~~~~D~l~ggp   77 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP------ETNLLNRNIQQLTPQVIKKWNVDTILMSP   77 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT------TSCEECCCGGGCCHHHHHHTTCCEEEECC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC------CCceeccccccCCHHHhccCCCCEEEecC
Confidence            379999999999999998755   357799999999999988873      345778999887532     589999999


Q ss_pred             Cccc
Q 047897          104 PYGI  107 (232)
Q Consensus       104 p~~~  107 (232)
                      |...
T Consensus        78 PCQ~   81 (333)
T 4h0n_A           78 PCQP   81 (333)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8663

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=97.41  E-value=0.00029  Score=58.02  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             EEEEEcCCccHhHHHHHhcCCe-EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCccc
Q 047897           33 TVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPYGI  107 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~~~  107 (232)
                      +|||+-||.|.++..+-+.+.+ +.++|+|+.+++..+.|+.       -.++.+|+.++..   +..|++++.+|+..
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~-------~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~   73 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPPSQS   73 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC-------SEEEESCGGGCCGGGSCCCSEEECCCCGGG
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCcccCChhhCCHhhCCcccEEEecCCCCC
Confidence            6999999999999999886655 5599999999999888862       3578899988754   47899999998763

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=97.27  E-value=0.00087  Score=56.97  Aligned_cols=63  Identities=17%  Similarity=0.194  Sum_probs=50.9

Q ss_pred             CCCCCEEEEEcCCccHhHHHHH-h-c--CCeEEEEEcCHHHHHHHHHHHhh--cCCC-ccEEEEEcCCCC
Q 047897           28 INPDDTVLEIGPGTGNLTLKLL-E-V--SKKVHAIEIDERMVEILNRRAAD--SGFH-DRLNVISKDALK   90 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~-~-~--~~~v~~vD~~~~~~~~a~~~~~~--~~~~-~~~~~~~~D~~~   90 (232)
                      +.+++.++|||++.|..+..++ + .  ..+|+++|.++..++.++++...  ++.. +++++++.-+-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            4688999999999999999887 3 2  27999999999999999999987  2222 578887765543

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.20  E-value=0.00012  Score=58.81  Aligned_cols=77  Identities=14%  Similarity=0.163  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCCCcceeecccC
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFPQFDLVVANIP  104 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~~D~Vi~n~p  104 (232)
                      +.++.+|||+||++|.++..+++.  ...|+|+|+...+...... ....+. +-+.+..+ |+..+....+|+|++|+.
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l~~~~~DlVlsD~A  156 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTMPTEPSDTLLCDIG  156 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeecCCCCcCEEeecCc
Confidence            457889999999999999999973  4578999987532110000 000011 11333322 444555458999999975


Q ss_pred             cc
Q 047897          105 YG  106 (232)
Q Consensus       105 ~~  106 (232)
                      -+
T Consensus       157 Pn  158 (300)
T 3eld_A          157 ES  158 (300)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=97.15  E-value=0.0004  Score=60.14  Aligned_cols=76  Identities=14%  Similarity=0.210  Sum_probs=58.2

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCCe-EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------------
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSKK-VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------------   92 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------------   92 (232)
                      .-+++|+.||.|+++..+.+.+.+ |.++|+|+.+++..+.|+...   +...++.+|+.++.                 
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~---p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~  164 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD---PATHHFNEDIRDITLSHQEGVSDEAAAEHIR  164 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC---TTTCEEESCTHHHHCTTCTTSCHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC---CCcceeccchhhhhhccccccchhhHHhhhh
Confidence            357999999999999999886644 789999999999888886321   23456788987653                 


Q ss_pred             --CCCcceeecccCcccch
Q 047897           93 --FPQFDLVVANIPYGISS  109 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~~  109 (232)
                        .+.+|++++.+|+..-+
T Consensus       165 ~~~~~~Dvl~gGpPCQ~FS  183 (482)
T 3me5_A          165 QHIPEHDVLLAGFPCQPFS  183 (482)
T ss_dssp             HHSCCCSEEEEECCCCCC-
T ss_pred             hcCCCCCEEEecCCCcchh
Confidence              23689999999976543

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=96.94  E-value=0.0043  Score=51.95  Aligned_cols=92  Identities=11%  Similarity=0.115  Sum_probs=50.5

Q ss_pred             HHHHHHHhcCCCC-----CCEEEEEcCCccHhHHHHHh-----------------cCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           18 VLDSIVRKSSINP-----DDTVLEIGPGTGNLTLKLLE-----------------VSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        18 ~~~~i~~~~~~~~-----~~~vLDiG~G~G~~t~~l~~-----------------~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      ++++.++.+....     ..+|+|+|||+|..|..++.                 +..+|+.-|+-..-....=+.+...
T Consensus        35 ~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~  114 (374)
T 3b5i_A           35 LLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPL  114 (374)
T ss_dssp             HHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCB
T ss_pred             HHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhh
Confidence            3344445554433     46899999999999988843                 1235666665544333222222211


Q ss_pred             C-----------CCccEEEEEc---CCCC--CCCCCcceeecccCcccch
Q 047897           76 G-----------FHDRLNVISK---DALK--TEFPQFDLVVANIPYGISS  109 (232)
Q Consensus        76 ~-----------~~~~~~~~~~---D~~~--~~~~~~D~Vi~n~p~~~~~  109 (232)
                      .           ...+-.++.+   .+..  +|..++|+|+++...||-+
T Consensus       115 ~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls  164 (374)
T 3b5i_A          115 VSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLS  164 (374)
T ss_dssp             CCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             hhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeec
Confidence            0           0001112332   2222  2334899999999988875

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=96.14  E-value=0.006  Score=57.24  Aligned_cols=70  Identities=14%  Similarity=0.180  Sum_probs=52.9

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCC--eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC-----------------C
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK-----------------T   91 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~-----------------~   91 (232)
                      .-+++|+-||.|+++..+.+.+.  -+.|+|+|+.+++..+.|+      ++..++.+|+.+                 +
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~------p~~~~~~~DI~~l~~~~~~~di~~~~~~~l  613 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN------PGSTVFTEDCNILLKLVMAGETTNSRGQRL  613 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC------TTSEEECSCHHHHHHHHHHTCSBCTTCCBC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC------CCCccccccHHHHhhhccchhhhhhhhhhc
Confidence            34799999999999999988664  5779999999999888886      335566665421                 1


Q ss_pred             CC-CCcceeecccCcc
Q 047897           92 EF-PQFDLVVANIPYG  106 (232)
Q Consensus        92 ~~-~~~D~Vi~n~p~~  106 (232)
                      +. ..+|+|++.+|..
T Consensus       614 p~~~~vDll~GGpPCQ  629 (1002)
T 3swr_A          614 PQKGDVEMLCGGPPCQ  629 (1002)
T ss_dssp             CCTTTCSEEEECCCCT
T ss_pred             ccCCCeeEEEEcCCCc
Confidence            11 2689999999854

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=96.02  E-value=0.034  Score=46.63  Aligned_cols=51  Identities=25%  Similarity=0.351  Sum_probs=38.0

Q ss_pred             CCEEEEEcCCccHhHHHHHh---------cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE
Q 047897           31 DDTVLEIGPGTGNLTLKLLE---------VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI   84 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~---------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~   84 (232)
                      .-.|+|+|+|.|.++..+++         ...+++.||+|+.+.+.=++++...   +++.+.
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~---~~v~W~  140 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI---RNIHWH  140 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC---SSEEEE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC---CCeEEe
Confidence            34699999999999888875         1238999999999988766666442   245554

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=95.84  E-value=0.022  Score=47.75  Aligned_cols=76  Identities=11%  Similarity=-0.005  Sum_probs=48.3

Q ss_pred             CCEEEEEcCCccHhHHHHHhc-------------------CCeEEEEEcC-----------HHHHHHHHHHHhhcCCCcc
Q 047897           31 DDTVLEIGPGTGNLTLKLLEV-------------------SKKVHAIEID-----------ERMVEILNRRAADSGFHDR   80 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~-------------------~~~v~~vD~~-----------~~~~~~a~~~~~~~~~~~~   80 (232)
                      .-+|+|+|||+|..|..++..                   ..+|+..|+-           +.+.+.+++.   .|...+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            468999999999999887762                   1346677765           3333333221   121112


Q ss_pred             EEEEEcCCCCC-----CCCCcceeecccCcccch
Q 047897           81 LNVISKDALKT-----EFPQFDLVVANIPYGISS  109 (232)
Q Consensus        81 ~~~~~~D~~~~-----~~~~~D~Vi~n~p~~~~~  109 (232)
                      ..|+.|....+     |..++|+|++|...||.+
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls  163 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLS  163 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCS
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecC
Confidence            35666665553     334899999999988865

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=95.83  E-value=0.0093  Score=47.92  Aligned_cols=99  Identities=12%  Similarity=0.174  Sum_probs=57.0

Q ss_pred             CCCCCCEEEEEcC------CccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-CCcce
Q 047897           27 SINPDDTVLEIGP------GTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-PQFDL   98 (232)
Q Consensus        27 ~~~~~~~vLDiG~------G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~~~D~   98 (232)
                      ....+++|||+|+      -+|.....-..+ +..|+++|+.+-..           . .. .+++||..+... .++|+
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~s-----------d-a~-~~IqGD~~~~~~~~k~DL  172 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVS-----------D-AD-STLIGDCATVHTANKWDL  172 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBC-----------S-SS-EEEESCGGGEEESSCEEE
T ss_pred             eecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCccccc-----------C-CC-eEEEccccccccCCCCCE
Confidence            4557899999995      777732221123 46999999977311           1 23 459999876554 48999


Q ss_pred             eecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCC
Q 047897           99 VVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGD  143 (232)
Q Consensus        99 Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~  143 (232)
                      |+|++--+.+..     ......-.......-.++++..+++.|+
T Consensus       173 VISDMAPNtTG~-----~D~d~~Rs~~L~ElALdfA~~~LkpGGs  212 (344)
T 3r24_A          173 IISDMYDPRTKH-----VTKENDSKEGFFTYLCGFIKQKLALGGS  212 (344)
T ss_dssp             EEECCCCTTSCS-----SCSCCCCCCTHHHHHHHHHHHHEEEEEE
T ss_pred             EEecCCCCcCCc-----cccchhHHHHHHHHHHHHHHHhCcCCCE
Confidence            999974333321     1111100111223344677777776654

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=95.76  E-value=0.017  Score=49.10  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=45.9

Q ss_pred             ccccCCHHHHHHHHH--------hcCCCCCCEEEEEcCCccHhHHHHHh---c----CCeEEEEEcCHHHHHHHHHHHhh
Q 047897           10 QHILTNQRVLDSIVR--------KSSINPDDTVLEIGPGTGNLTLKLLE---V----SKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        10 q~fl~~~~~~~~i~~--------~~~~~~~~~vLDiG~G~G~~t~~l~~---~----~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      -.|.|.|++..-+-+        .......-.|+|+|+|+|.++..+++   .    ..+++.||+|+.+.+.=++++..
T Consensus       109 GDFiTAPeiS~~FGe~la~~~~~~~~~~g~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~  188 (432)
T 4f3n_A          109 SDFVTAPELSPLFAQTLARPVAQALDASGTRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA  188 (432)
T ss_dssp             -CCSSCGGGHHHHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred             CCccCchhhhHHHHHHHHHHHHHHHHhcCCCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence            358888776443222        21111246899999999999988876   1    24799999999998887777754

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=95.64  E-value=0.022  Score=52.41  Aligned_cols=42  Identities=17%  Similarity=0.248  Sum_probs=35.4

Q ss_pred             CCEEEEEcCCccHhHHHHHhcC-------CeEEEEEcCHHHHHHHHHHH
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVS-------KKVHAIEIDERMVEILNRRA   72 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~-------~~v~~vD~~~~~~~~a~~~~   72 (232)
                      ..+|+|+-||.|+++.-+-..+       .-+.++|+|+.+++..+.|+
T Consensus       212 ~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          212 TATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            3579999999999998887633       35779999999999998886

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=95.10  E-value=0.027  Score=47.60  Aligned_cols=43  Identities=14%  Similarity=0.006  Sum_probs=36.5

Q ss_pred             CEEEEEcCCccHhHHHHHhcC---Ce----EEEEEcCHHHHHHHHHHHhh
Q 047897           32 DTVLEIGPGTGNLTLKLLEVS---KK----VHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~---~~----v~~vD~~~~~~~~a~~~~~~   74 (232)
                      -+|+|+.||.|+++..+.+.+   .-    |.++|+|+.+++..+.++..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~   60 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK   60 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence            489999999999999998744   33    78999999999999888854

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=95.03  E-value=0.042  Score=53.05  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCccHhHHHHHhcCC--eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC------------C-----C
Q 047897           31 DDTVLEIGPGTGNLTLKLLEVSK--KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL------------K-----T   91 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~------------~-----~   91 (232)
                      .-+++|+.||.|+++..+...+.  -+.++|+++.+++..+.|+.      ...++.+|+.            +     +
T Consensus       851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p------~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP------GTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT------TSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC------CCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            45799999999999999988764  47799999999998888862      3445555532            1     1


Q ss_pred             CC-CCcceeecccCccc
Q 047897           92 EF-PQFDLVVANIPYGI  107 (232)
Q Consensus        92 ~~-~~~D~Vi~n~p~~~  107 (232)
                      +. ..+|+|++.+|...
T Consensus       925 p~~~~vDvl~GGpPCQ~  941 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQG  941 (1330)
T ss_dssp             CCTTTCSEEEECCCCTT
T ss_pred             cccCccceEEecCCCcc
Confidence            11 25799999998654

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=94.84  E-value=0.13  Score=40.60  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=56.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+.+|=-|.+.|.   ++..+++.+++|+.+|.+++.++.+.+.+...|  .++.++.+|+.+..            +.
T Consensus         6 ~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            6 KNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57788888887773   556666689999999999998888888887766  56999999998753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|-
T Consensus        84 ~iDiLVNNA   92 (254)
T 4fn4_A           84 RIDVLCNNA   92 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888764

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=94.67  E-value=0.021  Score=47.47  Aligned_cols=80  Identities=9%  Similarity=0.015  Sum_probs=52.4

Q ss_pred             CCEEEEEcCCccHhHHHHHhc------------------CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC--
Q 047897           31 DDTVLEIGPGTGNLTLKLLEV------------------SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK--   90 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~~------------------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~--   90 (232)
                      .-+|+|+||++|..|..+...                  ..+|+..|.-......+-+.+.......+..|+.|....  
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSFy  131 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY  131 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhhh
Confidence            356899999999988876653                  246888898877777666665431100023455544333  


Q ss_pred             -C--CCCCcceeecccCcccchH
Q 047897           91 -T--EFPQFDLVVANIPYGISSP  110 (232)
Q Consensus        91 -~--~~~~~D~Vi~n~p~~~~~~  110 (232)
                       -  |..++|+|++|...||.+.
T Consensus       132 ~rlfp~~S~d~v~Ss~aLHWls~  154 (359)
T 1m6e_X          132 GRLFPRNTLHFIHSSYSLMWLSQ  154 (359)
T ss_dssp             SCCSCTTCBSCEEEESCTTBCSS
T ss_pred             hccCCCCceEEEEehhhhhhccc
Confidence             3  3348999999999888753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.49  E-value=0.086  Score=37.28  Aligned_cols=70  Identities=24%  Similarity=0.327  Sum_probs=47.4

Q ss_pred             CCEEEEEcCCc-cH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecc
Q 047897           31 DDTVLEIGPGT-GN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVAN  102 (232)
Q Consensus        31 ~~~vLDiG~G~-G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n  102 (232)
                      .++|+=+|+|. |. ++..|.+.+.+|+++|.+++.++.+++    .    .+.++.+|+.+..      ....|.|+..
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~----~----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~   78 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE----R----GVRAVLGNAANEEIMQLAHLECAKWLILT   78 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH----T----TCEEEESCTTSHHHHHHTTGGGCSEEEEC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----c----CCCEEECCCCCHHHHHhcCcccCCEEEEE
Confidence            35688888865 32 233333468899999999998877654    2    3668999987642      2367888877


Q ss_pred             cCcccc
Q 047897          103 IPYGIS  108 (232)
Q Consensus       103 ~p~~~~  108 (232)
                      .|-...
T Consensus        79 ~~~~~~   84 (140)
T 3fwz_A           79 IPNGYE   84 (140)
T ss_dssp             CSCHHH
T ss_pred             CCChHH
Confidence            664433

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=94.27  E-value=0.15  Score=41.99  Aligned_cols=62  Identities=23%  Similarity=0.271  Sum_probs=46.2

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcC-HHHHHHHHHHHhhcC--------------------CCccEEEEEcCC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEID-ERMVEILNRRAADSG--------------------FHDRLNVISKDA   88 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~--------------------~~~~~~~~~~D~   88 (232)
                      +...|+.+|||.......+......+.-+|+| |+.++.-++.+...+                    ..++..++.+|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            45689999999999999998743455666666 888888777776541                    125788999998


Q ss_pred             CCC
Q 047897           89 LKT   91 (232)
Q Consensus        89 ~~~   91 (232)
                      .+.
T Consensus       177 ~d~  179 (334)
T 1rjd_A          177 NDI  179 (334)
T ss_dssp             TCH
T ss_pred             CCc
Confidence            774

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=94.20  E-value=0.11  Score=43.50  Aligned_cols=47  Identities=15%  Similarity=0.225  Sum_probs=38.4

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +.++++++++||-+|+|. |.++..+++ .+. +|+++|.+++..+.+++
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            456778999999999976 777777777 566 99999999988877654

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=94.19  E-value=0.33  Score=32.52  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=52.8

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~D~Vi  100 (232)
                      +.+|+=+|+  |.++..++.    .+ .+|+++|.+++-.+.+.    .    ..+.++.+|..+..     ...+|+|+
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~----~~~~~~~~d~~~~~~~~~~~~~~d~vi   74 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R----MGVATKQVDAKDEAGLAKALGGFDAVI   74 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T----TTCEEEECCTTCHHHHHHHTTTCSEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h----CCCcEEEecCCCHHHHHHHHcCCCEEE
Confidence            457888888  555555444    56 78999999987766544    1    34677888876532     23679999


Q ss_pred             cccCcccchHHHHHHhcC
Q 047897          101 ANIPYGISSPLVAKLVYG  118 (232)
Q Consensus       101 ~n~p~~~~~~~l~~~~~~  118 (232)
                      ...|+....+++......
T Consensus        75 ~~~~~~~~~~~~~~~~~~   92 (118)
T 3ic5_A           75 SAAPFFLTPIIAKAAKAA   92 (118)
T ss_dssp             ECSCGGGHHHHHHHHHHT
T ss_pred             ECCCchhhHHHHHHHHHh
Confidence            888877666655554443

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=94.11  E-value=0.2  Score=35.15  Aligned_cols=64  Identities=17%  Similarity=0.267  Sum_probs=45.2

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi  100 (232)
                      ..+|+=+|+|.  ++..+++    .+.+|+++|.+++.++.+++.        .+.++.+|+.+..      ....|.|+
T Consensus         6 ~~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~--------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLEDE--------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT--------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC--------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            35688888854  4544444    688999999999887766532        2668899987642      34678888


Q ss_pred             cccC
Q 047897          101 ANIP  104 (232)
Q Consensus       101 ~n~p  104 (232)
                      ...|
T Consensus        76 ~~~~   79 (141)
T 3llv_A           76 ITGS   79 (141)
T ss_dssp             ECCS
T ss_pred             EecC
Confidence            7766

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=93.76  E-value=0.4  Score=37.56  Aligned_cols=72  Identities=19%  Similarity=0.278  Sum_probs=54.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (264)
T 3ucx_A           10 TDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTG--RRALSVGTDITDDAQVAHLVDETMKAYG   87 (264)
T ss_dssp             TTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56788888887663   556666689999999999988877777776655  57999999998753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus        88 ~id~lv~nA   96 (264)
T 3ucx_A           88 RVDVVINNA   96 (264)
T ss_dssp             CCSEEEECC
T ss_pred             CCcEEEECC
Confidence            578888774

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=93.65  E-value=0.19  Score=41.69  Aligned_cols=48  Identities=19%  Similarity=0.311  Sum_probs=38.9

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      +..++.++++||-+|+|. |.++..+++ .+. +|+++|.+++..+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          184 NALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             TTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            556788999999999876 777777777 566 799999999988887654

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=93.50  E-value=0.28  Score=40.09  Aligned_cols=49  Identities=20%  Similarity=0.410  Sum_probs=40.1

Q ss_pred             HHHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      .++...++++++||-+|+|. |.++..+++ .+.+|+++|.+++-.+.+++
T Consensus       158 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          158 GLKVTDTRPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             HHHTTTCCTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HHHHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Confidence            34566788999999999875 777777777 67899999999998887765

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=93.44  E-value=0.32  Score=38.52  Aligned_cols=72  Identities=18%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..|++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAG--HDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4678888887665   2555566688999999999988877777766554  56999999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       101 ~id~lv~nA  109 (279)
T 3sju_A          101 PIGILVNSA  109 (279)
T ss_dssp             SCCEEEECC
T ss_pred             CCcEEEECC
Confidence            578888774

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=93.25  E-value=0.23  Score=39.20  Aligned_cols=72  Identities=15%  Similarity=0.134  Sum_probs=55.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .|+++|=-|.+.|.   ++..+++.+++|+..|.+++.++.+.+.+...+  .++..+.+|+.+..            +.
T Consensus         8 ~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            8 TGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            57778888877663   556666689999999999998887777777666  46889999998752            33


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|-
T Consensus        86 ~iDiLVNNA   94 (255)
T 4g81_D           86 HVDILINNA   94 (255)
T ss_dssp             CCCEEEECC
T ss_pred             CCcEEEECC
Confidence            679888874

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=92.92  E-value=0.51  Score=38.22  Aligned_cols=74  Identities=19%  Similarity=0.221  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.+||=.|++.|.   ++..|++.+.+|++++.+++-.+.+.+.+...+...++.++.+|+.+..            ++
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   86 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG   86 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence            46688888877653   5555666889999999999888777777665543247999999998753            13


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus        87 ~id~lv~nA   95 (319)
T 3ioy_A           87 PVSILCNNA   95 (319)
T ss_dssp             CEEEEEECC
T ss_pred             CCCEEEECC
Confidence            568888774

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=92.89  E-value=0.32  Score=40.04  Aligned_cols=47  Identities=19%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +.+++.++++||-+|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            456788999999999875 677777776 566 89999999988877764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=92.85  E-value=0.64  Score=35.79  Aligned_cols=72  Identities=15%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+.+.+.+...+  .++.++.+|+.+..            .+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKG--FKARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3567777776554   2455555578999999999988877777776655  46999999998752            22


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.+|.|.
T Consensus        82 ~id~li~~A   90 (247)
T 3lyl_A           82 AIDILVNNA   90 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=92.53  E-value=0.7  Score=36.57  Aligned_cols=73  Identities=16%  Similarity=0.150  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++. +++..+...+.+...+  .++.++.+|+.+...            
T Consensus        28 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           28 ARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLG--ARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTT--CCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56778888876652   55556668899999995 6666666655555544  569999999987642            


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      +..|++|.|.-
T Consensus       106 g~iD~lvnnAg  116 (280)
T 4da9_A          106 GRIDCLVNNAG  116 (280)
T ss_dssp             SCCCEEEEECC
T ss_pred             CCCCEEEECCC
Confidence            25788887753

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=92.33  E-value=0.69  Score=36.42  Aligned_cols=74  Identities=20%  Similarity=0.210  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------P   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.++.-.+.+.+.+...+...++.++.+|+.+...            .
T Consensus        31 ~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  110 (279)
T 1xg5_A           31 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS  110 (279)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            4567887775544   234444457899999999988777666666555543568899999987531            2


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      .+|+||.|.
T Consensus       111 ~iD~vi~~A  119 (279)
T 1xg5_A          111 GVDICINNA  119 (279)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=92.31  E-value=0.46  Score=39.71  Aligned_cols=46  Identities=15%  Similarity=0.212  Sum_probs=37.2

Q ss_pred             hcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           25 KSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      .++++++++||-+|+|. |.++..+++ .+. +|+++|.+++-++.+++
T Consensus       180 ~~~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          180 TAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             HTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             HcCCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            45778999999999866 677777777 566 79999999998888764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=92.29  E-value=0.67  Score=36.84  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-C------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-E------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~------------~   93 (232)
                      .+.++|=.|++.|   .++..|++.+.+|++++.++.-.+.+.+.+...+- .++.++.+|+.+. .            .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            4667887776655   24445555789999999998877776666655432 4799999999886 2            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      +..|++|.|.-
T Consensus        90 g~iD~lv~nAg  100 (311)
T 3o26_A           90 GKLDILVNNAG  100 (311)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            25799998754

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=92.19  E-value=0.64  Score=36.22  Aligned_cols=72  Identities=15%  Similarity=0.233  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+.+.+.+...+  .++.++.+|+.+..             +
T Consensus         4 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   81 (260)
T 2qq5_A            4 NGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLG--GQCVPVVCDSSQESEVRSLFEQVDREQQ   81 (260)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHS--SEEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcC--CceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            3567777775544   2344445578999999999877766655554444  46889999998742             3


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|-
T Consensus        82 g~id~lvnnA   91 (260)
T 2qq5_A           82 GRLDVLVNNA   91 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCceEEEECC
Confidence            3568888876

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=92.10  E-value=0.88  Score=35.72  Aligned_cols=71  Identities=17%  Similarity=0.259  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCccHhHHHH----HhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKL----LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l----~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++ |.++..+    ++.+.+|++++.++...+...+.+...+  .++.++.+|+.+..            +
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            45678877765 4444444    4478999999999887776666655444  46999999998742            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +.+|.||.|.
T Consensus       107 g~iD~li~~A  116 (272)
T 1yb1_A          107 GDVSILVNNA  116 (272)
T ss_dssp             CCCSEEEECC
T ss_pred             CCCcEEEECC
Confidence            3578888775

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=92.06  E-value=0.44  Score=39.52  Aligned_cols=47  Identities=26%  Similarity=0.333  Sum_probs=38.0

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..++++++++||-+|+|. |.++..+++ .+.+|++++.+++-.+.+++
T Consensus       188 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          188 RHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            445778999999999875 666777776 67889999999988888775

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=91.93  E-value=0.51  Score=35.84  Aligned_cols=66  Identities=23%  Similarity=0.260  Sum_probs=44.8

Q ss_pred             EEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeeccc
Q 047897           34 VLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANI  103 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~  103 (232)
                      |+=+|+  |.++..+++    .+.+|+++|.+++.++.+.+..       ++.++.+|+.+..      ....|.|++..
T Consensus         3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~-------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~   73 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKL-------KATIIHGDGSHKEILRDAEVSKNDVVVILT   73 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHS-------SSEEEESCTTSHHHHHHHTCCTTCEEEECC
T ss_pred             EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHc-------CCeEEEcCCCCHHHHHhcCcccCCEEEEec
Confidence            455564  666666555    6789999999998877654432       3668999997642      34678888766


Q ss_pred             Ccccc
Q 047897          104 PYGIS  108 (232)
Q Consensus       104 p~~~~  108 (232)
                      +-...
T Consensus        74 ~~d~~   78 (218)
T 3l4b_C           74 PRDEV   78 (218)
T ss_dssp             SCHHH
T ss_pred             CCcHH
Confidence            64433

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=91.88  E-value=0.78  Score=35.72  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C-
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F-   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~-   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+.+.+.+...+  .++.++.+|+.+..            + 
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4567887776544   2444455578999999999887766555554433  46889999998752            1 


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|.
T Consensus        86 g~id~lv~~A   95 (260)
T 2ae2_A           86 GKLNILVNNA   95 (260)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            4678888774

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=91.73  E-value=0.44  Score=37.70  Aligned_cols=72  Identities=19%  Similarity=0.281  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++..+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        31 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           31 SGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVG--GKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46788888876552   555556688999999999887777776666554  46889999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       109 ~iD~lvnnA  117 (276)
T 3r1i_A          109 GIDIAVCNA  117 (276)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=91.70  E-value=1  Score=35.46  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..|++.+.+|++++.+++-.+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            4567888887654   2444455578999999999877766555555444  46889999997642            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        99 ~iD~lv~~A  107 (277)
T 2rhc_B           99 PVDVLVNNA  107 (277)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.69  E-value=2.2  Score=29.20  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=42.1

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC------CCCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT------EFPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~------~~~~~D~Vi  100 (232)
                      +.+|+=+|+  |.++..+++    .+.+|+++|.+++.++.+++..       .+.++.+|..+.      .....|.|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~-------~~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhc-------CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            356777876  555544443    6789999999988766554321       255677877542      134678888


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      ...|.
T Consensus        75 ~~~~~   79 (140)
T 1lss_A           75 AVTGK   79 (140)
T ss_dssp             ECCSC
T ss_pred             EeeCC
Confidence            76654

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=91.68  E-value=0.78  Score=36.07  Aligned_cols=72  Identities=19%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcC------------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEID------------ERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      .+.++|=.|++.|   .++..|++.+.+|+++|.+            ++.++...+.....+  .++.++.+|+.+..  
T Consensus        12 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           12 TGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRESL   89 (278)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHH
Confidence            4678888887655   2555566689999999987            555655555555544  57999999998753  


Q ss_pred             ----------CCCcceeeccc
Q 047897           93 ----------FPQFDLVVANI  103 (232)
Q Consensus        93 ----------~~~~D~Vi~n~  103 (232)
                                ++..|++|.|-
T Consensus        90 ~~~~~~~~~~~g~id~lv~nA  110 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANA  110 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECC
Confidence                      12579998874

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=91.67  E-value=0.45  Score=37.86  Aligned_cols=69  Identities=12%  Similarity=0.145  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|.+.|.   ++..|++.+++|+.+|.+++.++.+.+.+   +  .++..+.+|+.+..            +.
T Consensus        28 ~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G  102 (273)
T 4fgs_A           28 NAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEAG  102 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            57788888987773   56666668999999999998777655444   3  46778899998753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus       103 ~iDiLVNNA  111 (273)
T 4fgs_A          103 RIDVLFVNA  111 (273)
T ss_dssp             CEEEEEECC
T ss_pred             CCCEEEECC
Confidence            568888774

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=91.57  E-value=0.58  Score=38.37  Aligned_cols=47  Identities=23%  Similarity=0.338  Sum_probs=37.5

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +..+++++++||-+|+|. |.++..+++ .+.+|+++|.+++-.+.+++
T Consensus       162 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          162 RRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence            456788999999999864 666666666 67789999999988887764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=91.55  E-value=1  Score=35.30  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhh-cCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAAD-SGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~-~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+.+.. .+  .++.++.+|+.+...            
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFG--TDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            46678877776552   4555555789999999998877766665543 33  469999999988642            


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus        97 g~id~lv~nA  106 (266)
T 4egf_A           97 GGLDVLVNNA  106 (266)
T ss_dssp             TSCSEEEEEC
T ss_pred             CCCCEEEECC
Confidence            2578888774

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.51  E-value=0.85  Score=35.93  Aligned_cols=72  Identities=26%  Similarity=0.344  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC------------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID------------ERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|+.+|.+            .+.++.+...+...+  .++.++.+|+.+..  
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHH
Confidence            46788888876652   555566689999999987            666666655555544  57999999998753  


Q ss_pred             ----------CCCcceeeccc
Q 047897           93 ----------FPQFDLVVANI  103 (232)
Q Consensus        93 ----------~~~~D~Vi~n~  103 (232)
                                ++..|++|.|-
T Consensus        87 ~~~~~~~~~~~g~id~lv~nA  107 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANA  107 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECC
Confidence                      12578888874

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=91.46  E-value=0.49  Score=38.81  Aligned_cols=50  Identities=20%  Similarity=0.249  Sum_probs=39.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      .++...++++++||=+|+|. |.++..+++ .+. +|+++|.+++-.+.+++.
T Consensus       158 al~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          158 GAELANIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             HHHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            34667788999999999875 667777776 566 899999999888877664

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=91.45  E-value=0.88  Score=35.95  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC----------------HHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID----------------ERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~----------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+++|.+                .+.++...+.....+  .++.++.+|+.+
T Consensus        10 ~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~   87 (286)
T 3uve_A           10 EGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN--RRIVTAEVDVRD   87 (286)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTC
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC--CceEEEEcCCCC
Confidence            46788888887663   555666689999999987                555555555555444  579999999987


Q ss_pred             CC------------CCCcceeeccc
Q 047897           91 TE------------FPQFDLVVANI  103 (232)
Q Consensus        91 ~~------------~~~~D~Vi~n~  103 (232)
                      ..            ++..|++|.|.
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nA  112 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANA  112 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECC
Confidence            52            12578888874

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=91.41  E-value=0.92  Score=35.65  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C-
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F-   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~-   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+..            + 
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46678888865542   444455578999999999877766555554444  46889999997642            2 


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|.
T Consensus        98 g~id~lv~nA  107 (273)
T 1ae1_A           98 GKLNILVNNA  107 (273)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCcEEEECC
Confidence            4678888874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=91.35  E-value=0.38  Score=39.44  Aligned_cols=73  Identities=16%  Similarity=0.241  Sum_probs=49.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCccee
Q 047897           22 IVRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLV   99 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~V   99 (232)
                      .+...+++++++||-+|+|. |.++..+++ .+.+|++++.+++-.+.+++    .|. +.  ++ .|...+.. .+|+|
T Consensus       168 ~l~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa-~~--v~-~~~~~~~~-~~D~v  238 (348)
T 3two_A          168 PLKFSKVTKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV-KH--FY-TDPKQCKE-ELDFI  238 (348)
T ss_dssp             HHHHTTCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC-SE--EE-SSGGGCCS-CEEEE
T ss_pred             HHHhcCCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC-Ce--ec-CCHHHHhc-CCCEE
Confidence            34556788999999999865 666777776 67899999999988887765    332 22  22 34332222 68888


Q ss_pred             eccc
Q 047897          100 VANI  103 (232)
Q Consensus       100 i~n~  103 (232)
                      +-..
T Consensus       239 id~~  242 (348)
T 3two_A          239 ISTI  242 (348)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8543

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=91.32  E-value=1  Score=35.24  Aligned_cols=74  Identities=18%  Similarity=0.104  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-.+.+.+.+....-..++.++.+|+.+..            ++
T Consensus         7 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   86 (265)
T 3lf2_A            7 SEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTLG   86 (265)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            4667888887765   25555666889999999998887776666654211135899999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        87 ~id~lvnnA   95 (265)
T 3lf2_A           87 CASILVNNA   95 (265)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888875

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=91.31  E-value=0.96  Score=35.66  Aligned_cols=72  Identities=21%  Similarity=0.286  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEc-------------CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEI-------------DERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+++|.             +++.++.+.+.....+  .++.++.+|+.+.. 
T Consensus        14 ~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           14 QGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQG--RKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHH
Confidence            56788888877663   55566668999999998             6666666666665554  56899999998753 


Q ss_pred             -----------CCCcceeeccc
Q 047897           93 -----------FPQFDLVVANI  103 (232)
Q Consensus        93 -----------~~~~D~Vi~n~  103 (232)
                                 ++..|++|.|-
T Consensus        92 v~~~~~~~~~~~g~id~lvnnA  113 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANA  113 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECC
Confidence                       12578888874

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=91.29  E-value=0.52  Score=38.90  Aligned_cols=48  Identities=15%  Similarity=0.192  Sum_probs=38.2

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +..+++++++||=+|+|. |.++..+++ .+.+|++++.+++-.+.+++.
T Consensus       183 ~~~~~~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          183 EKGHLRAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             TTTCCCTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc
Confidence            456778999999999765 666666666 678999999999888877653

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=91.28  E-value=0.96  Score=35.42  Aligned_cols=74  Identities=18%  Similarity=0.215  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-.+.+.+.+...+....+.++.+|..+..        ++..|+
T Consensus         9 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   88 (267)
T 3t4x_A            9 KGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVDI   88 (267)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCCE
Confidence            4567887776554   24455555789999999998877766666554432246888999987642        236788


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      +|.|.
T Consensus        89 lv~nA   93 (267)
T 3t4x_A           89 LINNL   93 (267)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88774

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=91.25  E-value=0.93  Score=36.21  Aligned_cols=72  Identities=18%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC------------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID------------ERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+++|.+            ++.++.+.+.+...+  .++.++.+|+.+..  
T Consensus        27 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           27 EGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHH
Confidence            46788888877663   555666689999999987            555555555555544  57999999998753  


Q ss_pred             ----------CCCcceeeccc
Q 047897           93 ----------FPQFDLVVANI  103 (232)
Q Consensus        93 ----------~~~~D~Vi~n~  103 (232)
                                ++..|++|.|-
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nA  125 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANA  125 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHhCCCCEEEECC
Confidence                      12578888764

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.23  E-value=0.9  Score=32.26  Aligned_cols=67  Identities=19%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             CEEEEEcCCccHhHHHHHh----cCCeEEEEEcC-HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceee
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVV  100 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi  100 (232)
                      .+|+=+|+  |.++..+++    .+.+|+.+|.+ ++.++...+...     ..+.++.+|+.+..      ....|.|+
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG-----DNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC-----TTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhc-----CCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            45666775  666665554    67899999998 455544443321     34789999987642      34678888


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      +..+.
T Consensus        77 ~~~~~   81 (153)
T 1id1_A           77 ALSDN   81 (153)
T ss_dssp             ECSSC
T ss_pred             EecCC
Confidence            76553

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=91.14  E-value=1.3  Score=34.12  Aligned_cols=72  Identities=19%  Similarity=0.291  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++..+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4668888887655   2555556678999999999988877777766544  57899999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.+|.|.
T Consensus        86 ~id~li~~A   94 (253)
T 3qiv_A           86 GIDYLVNNA   94 (253)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888875

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=91.11  E-value=0.87  Score=35.39  Aligned_cols=72  Identities=21%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------PQ   95 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~   95 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+...           +.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAG--GRIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            46678888877662   555566688999999999888777777776554  579999999987531           25


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|++|.|.
T Consensus        84 id~lv~nA   91 (252)
T 3h7a_A           84 LEVTIFNV   91 (252)
T ss_dssp             EEEEEECC
T ss_pred             ceEEEECC
Confidence            68888764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=90.97  E-value=1.3  Score=34.53  Aligned_cols=73  Identities=16%  Similarity=0.225  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------P   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+...            +
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAG--GEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhC--CceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            5678888886554   2444455578999999999988877777776554  579999999987531            2


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|.+|.|.-
T Consensus       106 ~id~lv~~Ag  115 (262)
T 3rkr_A          106 RCDVLVNNAG  115 (262)
T ss_dssp             CCSEEEECCC
T ss_pred             CCCEEEECCC
Confidence            5788887753

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=90.85  E-value=0.49  Score=37.33  Aligned_cols=72  Identities=17%  Similarity=0.166  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..|++.+.+|+.++.+++-.+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        25 ~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           25 GGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVG--HDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            4667887776554   2455555578999999999988777777666555  46899999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus       103 ~iD~lv~nA  111 (271)
T 4ibo_A          103 DVDILVNNA  111 (271)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=90.67  E-value=1.5  Score=33.98  Aligned_cols=70  Identities=19%  Similarity=0.363  Sum_probs=47.9

Q ss_pred             CEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897           32 DTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF   96 (232)
Q Consensus        32 ~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   96 (232)
                      .++|=.|++.|   .++..|++.+.+|++++.+++-.+.+.+.+...+  .++.++.+|+.+..            ++..
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            46777776544   2444455578999999999877666555554444  46889999998752            1257


Q ss_pred             ceeeccc
Q 047897           97 DLVVANI  103 (232)
Q Consensus        97 D~Vi~n~  103 (232)
                      |++|.|.
T Consensus        81 d~lv~nA   87 (256)
T 1geg_A           81 DVIVNNA   87 (256)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            8888875

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=90.63  E-value=1.4  Score=35.10  Aligned_cols=74  Identities=24%  Similarity=0.268  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCC---eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC----------
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSK---KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF----------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~---~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----------   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.   +|+.++.+.+.++.+.+.+.......++.++.+|+.+...          
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            46788888876552   3444444455   9999999998887777666543222578999999987531          


Q ss_pred             --CCcceeeccc
Q 047897           94 --PQFDLVVANI  103 (232)
Q Consensus        94 --~~~D~Vi~n~  103 (232)
                        +..|++|.|-
T Consensus       112 ~~g~iD~lVnnA  123 (287)
T 3rku_A          112 EFKDIDILVNNA  123 (287)
T ss_dssp             GGCSCCEEEECC
T ss_pred             hcCCCCEEEECC
Confidence              2578888774

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=90.59  E-value=1.5  Score=34.81  Aligned_cols=61  Identities=10%  Similarity=-0.006  Sum_probs=42.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEE-cCHHHHHHHHHHHh-hcCCCccEEEEEcCCCCCC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIE-IDERMVEILNRRAA-DSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD-~~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~   92 (232)
                      .+.++|=.|++.|   .++..|++.+.+|+.++ .+++.++.+.+.+. ..+  .++.++.+|+.+..
T Consensus         8 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~   73 (291)
T 1e7w_A            8 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA   73 (291)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcC--CeeEEEEeecCCcc
Confidence            3567777776554   24444555789999999 99877766655554 333  46899999998765

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=90.46  E-value=0.42  Score=35.55  Aligned_cols=47  Identities=17%  Similarity=0.343  Sum_probs=34.7

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +..++.++++||..|+  |.|..+..++. .+.+|+++|.+++..+.+++
T Consensus        32 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           32 EVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             TTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            3456788999999995  45655555555 67899999999887766543

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=90.45  E-value=1.3  Score=34.89  Aligned_cols=72  Identities=15%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEc-------------CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEI-------------DERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+++|.             +.+.++...+.....+  .++.++.+|+.+.. 
T Consensus        10 ~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A           10 EGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAAN--RRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHH
Confidence            46788888876652   55556668999999998             5666665555555444  56999999998753 


Q ss_pred             -----------CCCcceeeccc
Q 047897           93 -----------FPQFDLVVANI  103 (232)
Q Consensus        93 -----------~~~~D~Vi~n~  103 (232)
                                 ++..|++|.|-
T Consensus        88 v~~~~~~~~~~~g~id~lvnnA  109 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANA  109 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHHcCCCCEEEECC
Confidence                       13578888874

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=90.37  E-value=0.77  Score=36.15  Aligned_cols=72  Identities=15%  Similarity=0.150  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|++++.+++..+...+.+...+  .++.++.+|+.+..            ++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           27 DKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAG--LEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHT--CCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            46677777765542   445555578999999999988777776666555  45888999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus       105 ~iD~lvnnA  113 (270)
T 3ftp_A          105 ALNVLVNNA  113 (270)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=90.36  E-value=0.86  Score=35.59  Aligned_cols=74  Identities=16%  Similarity=0.098  Sum_probs=54.7

Q ss_pred             CCCEEEEEcC----CccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           30 PDDTVLEIGP----GTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        30 ~~~~vLDiG~----G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      +|+++|=-|+    |.|. ++..|++.+++|+.++.+++..+.+.+.+...+- .++.++.+|+.+..            
T Consensus         5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (256)
T 4fs3_A            5 ENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQ-PEAHLYQIDVQSDEEVINGFEQIGKD   83 (256)
T ss_dssp             TTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTC-SSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            5778888885    3443 6666777899999999999888887777766543 46889999997752            


Q ss_pred             CCCcceeecccC
Q 047897           93 FPQFDLVVANIP  104 (232)
Q Consensus        93 ~~~~D~Vi~n~p  104 (232)
                      +...|+++.|..
T Consensus        84 ~G~iD~lvnnAg   95 (256)
T 4fs3_A           84 VGNIDGVYHSIA   95 (256)
T ss_dssp             HCCCSEEEECCC
T ss_pred             hCCCCEEEeccc
Confidence            235788887754

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=90.21  E-value=0.46  Score=40.82  Aligned_cols=61  Identities=20%  Similarity=0.318  Sum_probs=43.2

Q ss_pred             CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeec
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVA  101 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~  101 (232)
                      .+|+=+|||  ..+..+++    .+..|+.+|.|++.++.+.+.+       .+..++||+.+..      .+..|++++
T Consensus         4 M~iiI~G~G--~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            4 MKIIILGAG--QVGGTLAENLVGENNDITIVDKDGDRLRELQDKY-------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEEECCS--HHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHS-------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhc-------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            456666665  45555554    5788999999999988777654       3678999998753      236676665

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=90.18  E-value=0.58  Score=38.70  Aligned_cols=47  Identities=15%  Similarity=0.268  Sum_probs=36.7

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +..+++++++||-+|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus       186 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          186 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            456778899999999764 566666666 566 89999999988887764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=90.05  E-value=0.84  Score=37.52  Aligned_cols=49  Identities=20%  Similarity=0.331  Sum_probs=39.3

Q ss_pred             HHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCe-EEEEEcCHHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKK-VHAIEIDERMVEILNRR   71 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~-v~~vD~~~~~~~~a~~~   71 (232)
                      ++..++++|++||=+|+|. |.++..+++ .+.+ |+++|.+++-.+.+++.
T Consensus       172 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          172 LQRAGVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             HHHHTCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             HHHcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            3566788999999999865 666667776 5665 99999999999998876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=90.03  E-value=1.7  Score=34.55  Aligned_cols=72  Identities=11%  Similarity=0.111  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCc----c-HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           30 PDDTVLEIGPGT----G-NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~----G-~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      .+.++|=.|++.    | .++..+++.+.+|+.++.++...+.+.+.....   +++.++.+|+.+..            
T Consensus        30 ~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~  106 (293)
T 3grk_A           30 QGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEEL---GAFVAGHCDVADAASIDAVFETLEKK  106 (293)
T ss_dssp             TTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHH---TCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhc---CCceEEECCCCCHHHHHHHHHHHHHh
Confidence            567889888763    2 356666678999999999977666666555443   35889999998752            


Q ss_pred             CCCcceeecccC
Q 047897           93 FPQFDLVVANIP  104 (232)
Q Consensus        93 ~~~~D~Vi~n~p  104 (232)
                      ++..|++|.|.-
T Consensus       107 ~g~iD~lVnnAG  118 (293)
T 3grk_A          107 WGKLDFLVHAIG  118 (293)
T ss_dssp             TSCCSEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence            235788888753

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=89.93  E-value=1.8  Score=34.55  Aligned_cols=72  Identities=13%  Similarity=0.136  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------P   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+...            +
T Consensus        30 ~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           30 DGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQG--FDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            5678888887765   2555556688999999999988887777776655  469999999987531            2


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       108 ~id~lvnnA  116 (301)
T 3tjr_A          108 GVDVVFSNA  116 (301)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888874

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=89.92  E-value=0.46  Score=38.75  Aligned_cols=49  Identities=20%  Similarity=0.276  Sum_probs=39.7

Q ss_pred             HHhcCCCCCCEEEEEcCC--ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPG--TGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G--~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .+.+.++++++||-+|+|  .|..+..+++ .+.+|++++.+++-.+.+++.
T Consensus       137 ~~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  188 (340)
T 3gms_A          137 TETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL  188 (340)
T ss_dssp             HTTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHhcccCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC
Confidence            356778899999999987  5677777776 688999999999888877763

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=89.84  E-value=0.68  Score=38.11  Aligned_cols=47  Identities=17%  Similarity=0.215  Sum_probs=37.2

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..++++++++||-+|+|. |.++..+++ .+.+|++++.+++-.+.+++
T Consensus       173 ~~~~~~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~  221 (360)
T 1piw_A          173 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK  221 (360)
T ss_dssp             HHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH
Confidence            446788999999999854 566666666 67899999999888887765

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=89.83  E-value=0.59  Score=38.67  Aligned_cols=47  Identities=11%  Similarity=0.156  Sum_probs=36.7

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +..+++++++||=+|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          185 NTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            456788999999999864 566666666 566 89999999988887764

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.82  E-value=0.6  Score=39.47  Aligned_cols=65  Identities=17%  Similarity=0.200  Sum_probs=45.3

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi  100 (232)
                      +.+|+=+|+|.  ++..+++    .+..|+++|.|++.++.+++    .    .+.++.||+.+..      ....|.|+
T Consensus         4 ~~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            45677788755  4444433    68899999999999887763    2    2568999998752      34677777


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      +.++-
T Consensus        74 v~~~~   78 (413)
T 3l9w_A           74 NAIDD   78 (413)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            65553

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=89.80  E-value=0.68  Score=33.98  Aligned_cols=66  Identities=32%  Similarity=0.369  Sum_probs=42.5

Q ss_pred             CCEEEEEcCCc-cH-hHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-------CCCCcceee
Q 047897           31 DDTVLEIGPGT-GN-LTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-------EFPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~-G~-~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-------~~~~~D~Vi  100 (232)
                      +++|+=+|+|. |. ++..|.+. +.+|+++|.+++.++.+++    .|    +.++.+|..+.       .....|.|+
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~g----~~~~~gd~~~~~~l~~~~~~~~ad~vi  110 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----EG----RNVISGDATDPDFWERILDTGHVKLVL  110 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----TT----CCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----CC----CCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence            55788888754 22 22333336 8899999999987766543    22    45677887542       234678888


Q ss_pred             cccC
Q 047897          101 ANIP  104 (232)
Q Consensus       101 ~n~p  104 (232)
                      ...|
T Consensus       111 ~~~~  114 (183)
T 3c85_A          111 LAMP  114 (183)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            7655

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=89.70  E-value=1.9  Score=33.45  Aligned_cols=74  Identities=26%  Similarity=0.293  Sum_probs=54.0

Q ss_pred             CCCEEEEEcC-CccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGP-GTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~-G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|+ |.|.   ++..+++.+.+|+.++.+++-.+.+.+.+...+- .++.++.+|+.+..            +
T Consensus        21 ~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~   99 (266)
T 3o38_A           21 KGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGL-GRVEAVVCDVTSTEAVDALITQTVEKA   99 (266)
T ss_dssp             TTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCS-SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCC-CceEEEEeCCCCHHHHHHHHHHHHHHh
Confidence            4667888887 5542   6666777899999999999887777776654432 57999999998753            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      +..|++|.|.-
T Consensus       100 g~id~li~~Ag  110 (266)
T 3o38_A          100 GRLDVLVNNAG  110 (266)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            25688888743

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=89.66  E-value=0.68  Score=38.29  Aligned_cols=47  Identities=11%  Similarity=0.203  Sum_probs=36.5

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +..+++++++||-+|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus       185 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          185 KVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             hccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            456778899999999765 566666666 566 89999999988887754

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=89.66  E-value=1.6  Score=33.92  Aligned_cols=72  Identities=11%  Similarity=0.190  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------P   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-.+.+.+.+...+  .++.++.+|+.+...            +
T Consensus        11 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A           11 NDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAG--GKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             TTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46678877776552   455555578999999999988877777766555  579999999987531            2


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|.
T Consensus        89 ~id~lv~nA   97 (256)
T 3gaf_A           89 KITVLVNNA   97 (256)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=89.60  E-value=1.9  Score=34.92  Aligned_cols=61  Identities=10%  Similarity=-0.027  Sum_probs=41.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEE-cCHHHHHHHHHHHh-hcCCCccEEEEEcCCCCCC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIE-IDERMVEILNRRAA-DSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD-~~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~   92 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|++++ .+++.++.+.+.+. ..+  .++.++.+|+.+..
T Consensus        45 ~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~d~~  110 (328)
T 2qhx_A           45 TVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRP--NSAITVQADLSNVA  110 (328)
T ss_dssp             CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcC--CeEEEEEeeCCCch
Confidence            35677766655442   4444445789999999 99877766655554 333  46899999998765

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=89.53  E-value=0.73  Score=38.07  Aligned_cols=79  Identities=16%  Similarity=0.201  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCcceeecc
Q 047897           31 DDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQFDLVVAN  102 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~D~Vi~n  102 (232)
                      ..+|+=+||  |..+..+++   ....|+..|++.+-++.+++         .+..+..|+.+..     ....|+|++-
T Consensus        16 ~mkilvlGa--G~vG~~~~~~L~~~~~v~~~~~~~~~~~~~~~---------~~~~~~~d~~d~~~l~~~~~~~DvVi~~   84 (365)
T 3abi_A           16 HMKVLILGA--GNIGRAIAWDLKDEFDVYIGDVNNENLEKVKE---------FATPLKVDASNFDKLVEVMKEFELVIGA   84 (365)
T ss_dssp             CCEEEEECC--SHHHHHHHHHHTTTSEEEEEESCHHHHHHHTT---------TSEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             ccEEEEECC--CHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc---------cCCcEEEecCCHHHHHHHHhCCCEEEEe
Confidence            357999998  444444443   56789999999877765532         3455677876543     1367999988


Q ss_pred             cCcccchHHHHHHhcCCC
Q 047897          103 IPYGISSPLVAKLVYGTK  120 (232)
Q Consensus       103 ~p~~~~~~~l~~~~~~~~  120 (232)
                      +|+....+++...++...
T Consensus        85 ~p~~~~~~v~~~~~~~g~  102 (365)
T 3abi_A           85 LPGFLGFKSIKAAIKSKV  102 (365)
T ss_dssp             CCGGGHHHHHHHHHHHTC
T ss_pred             cCCcccchHHHHHHhcCc
Confidence            887777666666555443

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=89.47  E-value=2  Score=34.08  Aligned_cols=72  Identities=15%  Similarity=0.255  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+...+.+... +  .++.++.+|+.+..            +
T Consensus        25 ~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (302)
T 1w6u_A           25 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKVA  102 (302)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CceEEEEeCCCCHHHHHHHHHHHHHHc
Confidence            3567887776544   244444557899999999987666555544332 3  46999999998642            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +.+|+||.|.
T Consensus       103 g~id~li~~A  112 (302)
T 1w6u_A          103 GHPNIVINNA  112 (302)
T ss_dssp             CSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            2568888764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=89.46  E-value=1.4  Score=34.20  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++..+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFP--GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCST--TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4567787776554   2455555578999999999988887777765544  57999999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        83 ~id~lv~nA   91 (257)
T 3imf_A           83 RIDILINNA   91 (257)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=89.45  E-value=0.7  Score=38.18  Aligned_cols=48  Identities=10%  Similarity=0.214  Sum_probs=37.0

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      +..+++++++||-+|+|. |.++..+++ .+. +|+++|.+++-.+.+++.
T Consensus       184 ~~~~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          184 NTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            456778899999999764 556666666 566 899999999888887653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=89.41  E-value=0.73  Score=38.12  Aligned_cols=47  Identities=17%  Similarity=0.257  Sum_probs=36.4

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +..++.++++||=+|+|. |.++..+++ .+. +|+++|.+++-.+.+++
T Consensus       189 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          189 NTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             TTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            456778899999999764 566666666 566 89999999988877754

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=89.40  E-value=1.8  Score=33.56  Aligned_cols=69  Identities=16%  Similarity=0.226  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-.+...+.+   +  .++.++.+|+.+..            ++
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   81 (259)
T 4e6p_A            7 EGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEI---G--PAAYAVQMDVTRQDSIDAAIAATVEHAG   81 (259)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CCceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4668888886655   245555568899999999987766555444   2  46889999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        82 ~id~lv~~A   90 (259)
T 4e6p_A           82 GLDILVNNA   90 (259)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888874

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=89.39  E-value=1.7  Score=34.00  Aligned_cols=72  Identities=18%  Similarity=0.213  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAG--GTALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35677777776552   455555688999999999988877777776654  57889999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        81 ~iD~lVnnA   89 (264)
T 3tfo_A           81 RIDVLVNNA   89 (264)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=89.34  E-value=1.3  Score=35.64  Aligned_cols=72  Identities=18%  Similarity=0.314  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC------------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID------------ERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|+++|.+            .+.++...+.....+  .++.++.+|+.+..  
T Consensus        45 ~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           45 QGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQG--RRIIARQADVRDLASL  122 (317)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHH
Confidence            46678888876552   555566689999999986            555555555554444  56999999998753  


Q ss_pred             ----------CCCcceeeccc
Q 047897           93 ----------FPQFDLVVANI  103 (232)
Q Consensus        93 ----------~~~~D~Vi~n~  103 (232)
                                ++..|++|.|-
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnA  143 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNV  143 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECC
T ss_pred             HHHHHHHHHHcCCCCEEEECC
Confidence                      12578888874

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=89.24  E-value=2.2  Score=33.77  Aligned_cols=72  Identities=26%  Similarity=0.338  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAG--GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46678888876652   555556688999999999988777777665544  57899999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       105 ~iD~lVnnA  113 (283)
T 3v8b_A          105 HLDIVVANA  113 (283)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888764

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=89.10  E-value=1.1  Score=36.97  Aligned_cols=49  Identities=24%  Similarity=0.252  Sum_probs=38.6

Q ss_pred             HHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      ++...++++++||=+|+|. |.++..+++ .+. +|+++|.+++-.+.+++.
T Consensus       175 l~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          175 VDLSGIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            3567788999999999865 666666666 566 899999999988877764

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=89.10  E-value=1.7  Score=35.20  Aligned_cols=58  Identities=12%  Similarity=0.165  Sum_probs=46.0

Q ss_pred             CEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCC--CccEEEEEcCCCC
Q 047897           32 DTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGF--HDRLNVISKDALK   90 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~~~D~~~   90 (232)
                      ..|+++|||.=.....+.. .+.+++=+| .|..++..++.+...+.  .++..++.+|+.+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d  164 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ  164 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh
Confidence            4699999999888777664 346888888 69999999999875432  3688999999987

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=89.10  E-value=2.6  Score=32.91  Aligned_cols=63  Identities=10%  Similarity=0.091  Sum_probs=47.3

Q ss_pred             CEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccC
Q 047897           32 DTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIP  104 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p  104 (232)
                      .+||=.| + |.++..+++    .+.+|++++.++.-.+....        .+++++.+|..++....+|.||....
T Consensus         6 ~~ilVtG-a-G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~~~~~d~vi~~a~   72 (286)
T 3ius_A            6 GTLLSFG-H-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPSLDGVTHLLISTA   72 (286)
T ss_dssp             CEEEEET-C-CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCCCTTCCEEEECCC
T ss_pred             CcEEEEC-C-cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccccCCCCEEEECCC
Confidence            5789999 4 888777766    67899999998865443321        35899999998876557898887654

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=89.05  E-value=1.4  Score=36.00  Aligned_cols=48  Identities=31%  Similarity=0.648  Sum_probs=37.5

Q ss_pred             HHhcCCCCCCEEEEEcCC--ccHhHHHHHh-c-CCeEEEEEcCHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPG--TGNLTLKLLE-V-SKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G--~G~~t~~l~~-~-~~~v~~vD~~~~~~~~a~~   70 (232)
                      +...++.++++||-+|+|  .|..+..+++ . +.+|+++|.+++..+.+++
T Consensus       163 l~~~~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~  214 (347)
T 1jvb_A          163 VRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR  214 (347)
T ss_dssp             HHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            345678899999999997  4555656655 6 8999999999988887754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=89.04  E-value=0.96  Score=36.66  Aligned_cols=46  Identities=15%  Similarity=0.191  Sum_probs=36.0

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILN   69 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~   69 (232)
                      +..++.++++||-.|+  |.|..+..++. .+.+|+++|.+++..+.++
T Consensus       139 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~  187 (333)
T 1v3u_A          139 EVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLK  187 (333)
T ss_dssp             TTSCCCSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred             HhhCCCCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence            4567788999999998  55666666555 6789999999988877763

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=88.94  E-value=2  Score=33.00  Aligned_cols=70  Identities=20%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      ++.+||=.|++.|   .++..+++.+.+|++++.+++.++...+.+.     .++.+..+|..+..        ....|+
T Consensus        13 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~id~   87 (249)
T 3f9i_A           13 TGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALK-----DNYTIEVCNLANKEECSNLISKTSNLDI   87 (249)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----SSEEEEECCTTSHHHHHHHHHTCSCCSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhc-----cCccEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            5678887776655   2445555578999999999887766655542     46889999987642        135788


Q ss_pred             eecccC
Q 047897           99 VVANIP  104 (232)
Q Consensus        99 Vi~n~p  104 (232)
                      +|.|.-
T Consensus        88 li~~Ag   93 (249)
T 3f9i_A           88 LVCNAG   93 (249)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            888753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=88.91  E-value=0.9  Score=37.12  Aligned_cols=48  Identities=19%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             HHhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +...++.++++||-+|+  |.|..+..++. .+.+|++++.+++..+.+++
T Consensus       162 l~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~  212 (347)
T 2hcy_A          162 LKSANLMAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS  212 (347)
T ss_dssp             HHTTTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH
T ss_pred             HHhcCCCCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH
Confidence            34457788999999998  46666666665 67899999999887776654

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=88.90  E-value=1.4  Score=34.14  Aligned_cols=71  Identities=15%  Similarity=0.128  Sum_probs=47.9

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      .+.++|=.|++ |.++..    |++.+.+|++++.++.-.+...+.+...+  .++.++.+|+.+...            
T Consensus        13 ~~k~vlITGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (266)
T 1xq1_A           13 KAKTVLVTGGT-KGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMF   89 (266)
T ss_dssp             TTCEEEETTTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHHh
Confidence            35677766654 444444    44478999999999877666555554443  468899999876421            


Q ss_pred             -CCcceeeccc
Q 047897           94 -PQFDLVVANI  103 (232)
Q Consensus        94 -~~~D~Vi~n~  103 (232)
                       ...|.||.|.
T Consensus        90 ~~~id~li~~A  100 (266)
T 1xq1_A           90 GGKLDILINNL  100 (266)
T ss_dssp             TTCCSEEEEEC
T ss_pred             CCCCcEEEECC
Confidence             4568888764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=88.82  E-value=2  Score=33.38  Aligned_cols=74  Identities=11%  Similarity=0.099  Sum_probs=52.7

Q ss_pred             CCCEEEEEcCC--cc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------
Q 047897           30 PDDTVLEIGPG--TG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------   93 (232)
Q Consensus        30 ~~~~vLDiG~G--~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------   93 (232)
                      .+.++|=.|++  .|   .++..+++.+.+|+.++.++...+.+.+.....+- .++.++.+|+.+...           
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            46678888865  33   26666777899999999988777766666655442 368999999987631           


Q ss_pred             -CCcceeecccC
Q 047897           94 -PQFDLVVANIP  104 (232)
Q Consensus        94 -~~~D~Vi~n~p  104 (232)
                       +..|.++.|.-
T Consensus        85 ~g~id~li~~Ag   96 (266)
T 3oig_A           85 VGVIHGIAHCIA   96 (266)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCeeEEEEccc
Confidence             25688887753

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=88.79  E-value=1  Score=35.67  Aligned_cols=73  Identities=18%  Similarity=0.199  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++..+.+.+.+...+- ..+.++.+|+.+..            ++
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTG-NIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-CeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            46678877765542   4444555789999999998877766666544331 34689999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       111 ~iD~lvnnA  119 (281)
T 4dry_A          111 RLDLLVNNA  119 (281)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            568888774

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=88.75  E-value=1  Score=35.25  Aligned_cols=66  Identities=27%  Similarity=0.384  Sum_probs=46.8

Q ss_pred             CEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897           32 DTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF   96 (232)
Q Consensus        32 ~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   96 (232)
                      ++||=-|++.|.   ++..+++.+++|+.+|.+++..+...+    .+  .++..+.+|+.+..            +...
T Consensus         3 K~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~----~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~i   76 (247)
T 3ged_A            3 RGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAK----ER--PNLFYFHGDVADPLTLKKFVEYAMEKLQRI   76 (247)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHT----TC--TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hc--CCEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            467777877763   566667789999999999876543322    22  46889999998752            2357


Q ss_pred             ceeeccc
Q 047897           97 DLVVANI  103 (232)
Q Consensus        97 D~Vi~n~  103 (232)
                      |++|.|-
T Consensus        77 DiLVNNA   83 (247)
T 3ged_A           77 DVLVNNA   83 (247)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            8888774

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=88.71  E-value=2.7  Score=32.35  Aligned_cols=71  Identities=23%  Similarity=0.287  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      .+.++|=.|++ |.++..    |++.+.+|++++.++...+...+.+...+  .++.++.+|+.+...            
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEG--HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            45678877765 444444    44478999999999877665555555444  469999999987531            


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|.||.|.
T Consensus        89 ~~id~vi~~A   98 (260)
T 3awd_A           89 GRVDILVACA   98 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=88.69  E-value=1.9  Score=33.76  Aligned_cols=71  Identities=13%  Similarity=0.056  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEc-CHHHHHHHHHHHhhc-CCCccEEEEEcCCCCC----CC------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEI-DERMVEILNRRAADS-GFHDRLNVISKDALKT----EF------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~-~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~----~~------   93 (232)
                      .+.++|=.|++ |.++..    |++.+.+|++++. +++..+.+.+.+... +  .++.++.+|+.+.    ..      
T Consensus        10 ~~k~~lVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (276)
T 1mxh_A           10 ECPAAVITGGA-RRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARA--GSAVLCKGDLSLSSSLLDCCEDIID   86 (276)
T ss_dssp             -CCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHST--TCEEEEECCCSSSTTHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcC--CceEEEeccCCCccccHHHHHHHHH
Confidence            35577766655 444444    4447899999999 877666555555433 3  4688999999876    21      


Q ss_pred             ------CCcceeeccc
Q 047897           94 ------PQFDLVVANI  103 (232)
Q Consensus        94 ------~~~D~Vi~n~  103 (232)
                            +..|++|.|-
T Consensus        87 ~~~~~~g~id~lv~nA  102 (276)
T 1mxh_A           87 CSFRAFGRCDVLVNNA  102 (276)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHhcCCCCEEEECC
Confidence                  1468888774

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=88.69  E-value=1.7  Score=33.61  Aligned_cols=73  Identities=16%  Similarity=0.231  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC--CCCC------------
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA--LKTE------------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~--~~~~------------   92 (232)
                      .+.++|=.|++.|   .++..|++.+.+|+.++.+++-++.+.+.+...+- .++.++.+|+  .+..            
T Consensus        11 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           11 NDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETG-RQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS-CCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC-CCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            4678888887655   24555556889999999998877766666544331 3688899998  3321            


Q ss_pred             CCCcceeeccc
Q 047897           93 FPQFDLVVANI  103 (232)
Q Consensus        93 ~~~~D~Vi~n~  103 (232)
                      ++..|++|.|.
T Consensus        90 ~g~id~lv~nA  100 (252)
T 3f1l_A           90 YPRLDGVLHNA  100 (252)
T ss_dssp             CSCCSEEEECC
T ss_pred             CCCCCEEEECC
Confidence            12578888774

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=88.60  E-value=1.4  Score=35.80  Aligned_cols=47  Identities=19%  Similarity=0.396  Sum_probs=36.8

Q ss_pred             HhcCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ....+.++++||-+|+| .|..+..+++ .+.+|++++.+++-.+.+++
T Consensus       158 ~~~~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (339)
T 1rjw_A          158 KVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE  206 (339)
T ss_dssp             HHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            44477889999999985 3666666666 67899999999988887764

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=88.49  E-value=1.1  Score=36.47  Aligned_cols=44  Identities=14%  Similarity=0.232  Sum_probs=35.7

Q ss_pred             CCCCCCEEEEEcCCc-cHhHHHHHh-c--CCeEEEEEcCHHHHHHHHHH
Q 047897           27 SINPDDTVLEIGPGT-GNLTLKLLE-V--SKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~-G~~t~~l~~-~--~~~v~~vD~~~~~~~~a~~~   71 (232)
                      ++ ++++||-+|+|. |.++..+++ .  +.+|++++.+++-.+.+++.
T Consensus       168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l  215 (344)
T 2h6e_A          168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL  215 (344)
T ss_dssp             TC-SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH
T ss_pred             CC-CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh
Confidence            67 899999999864 566666666 6  88999999999888887653

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=88.32  E-value=3.1  Score=32.01  Aligned_cols=72  Identities=17%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAG--AKVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3567888886654   2444555578999999999887776666555444  46889999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (247)
T 2jah_A           84 GLDILVNNA   92 (247)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888764

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=88.31  E-value=1.3  Score=36.02  Aligned_cols=44  Identities=25%  Similarity=0.566  Sum_probs=36.2

Q ss_pred             CCCCCCEEEEEcCCc-cHhHHHHHh-c-CCeEEEEEcCHHHHHHHHH
Q 047897           27 SINPDDTVLEIGPGT-GNLTLKLLE-V-SKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~-G~~t~~l~~-~-~~~v~~vD~~~~~~~~a~~   70 (232)
                      .++++++||=+|+|. |.++..+++ . +.+|+++|.+++-.+.+++
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~  214 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE  214 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            677899999999865 667777776 4 7899999999998887765

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=88.25  E-value=0.62  Score=38.64  Aligned_cols=48  Identities=21%  Similarity=0.341  Sum_probs=37.2

Q ss_pred             HHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      .+...++++++||=+|+|. |.++..+++ .+. +|+++|.+++-++.+++
T Consensus       186 ~~~~~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          186 WNTAKVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             HTTTCCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             HhhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            3556788899999999864 666666766 565 89999999988877654

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=87.93  E-value=1.9  Score=33.23  Aligned_cols=69  Identities=20%  Similarity=0.238  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+...+.+.     .+..++.+|+.+..            ++
T Consensus         8 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (248)
T 3op4_A            8 EGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLG-----DNGKGMALNVTNPESIEAVLKAITDEFG   82 (248)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----ccceEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            4667888887655   2555566689999999999887766655553     35778999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|-
T Consensus        83 ~iD~lv~nA   91 (248)
T 3op4_A           83 GVDILVNNA   91 (248)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888874

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=87.89  E-value=0.95  Score=36.72  Aligned_cols=45  Identities=16%  Similarity=0.171  Sum_probs=36.7

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEIL   68 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a   68 (232)
                      +...++++++||-+|+  |.|..+..+++ .+.+|++++.+++-.+.+
T Consensus       143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~  190 (336)
T 4b7c_A          143 DVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL  190 (336)
T ss_dssp             HTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            5678889999999998  55667777666 678999999999877766

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=87.69  E-value=1.6  Score=36.11  Aligned_cols=47  Identities=15%  Similarity=0.202  Sum_probs=36.3

Q ss_pred             HhcC-CCCCCEEEEEcCCc-cHhHHHHHh-cC-CeEEEEEcCHHHHHHHHH
Q 047897           24 RKSS-INPDDTVLEIGPGT-GNLTLKLLE-VS-KKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~-~~~~~~vLDiG~G~-G~~t~~l~~-~~-~~v~~vD~~~~~~~~a~~   70 (232)
                      +.++ ++++++||-+|+|. |.++..+++ .+ .+|++++.+++-.+.+++
T Consensus       188 ~~~~~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~  238 (380)
T 1vj0_A          188 DEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE  238 (380)
T ss_dssp             HTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH
Confidence            4566 78899999999653 556666666 56 699999999988887764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=87.64  E-value=3.4  Score=32.45  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=52.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++..+.+.+.+...+.. .++.++.+|+.+..            +
T Consensus        10 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (281)
T 3svt_A           10 QDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH   89 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            4667888887655   255556668899999999998877777766654421 27899999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|-
T Consensus        90 g~id~lv~nA   99 (281)
T 3svt_A           90 GRLHGVVHCA   99 (281)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2568888764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=87.59  E-value=3.5  Score=31.98  Aligned_cols=72  Identities=18%  Similarity=0.287  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++..+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            45678878876552   444555578999999999887776666655444  46889999997753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        84 ~id~lv~nA   92 (262)
T 1zem_A           84 KIDFLFNNA   92 (262)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888775

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=87.46  E-value=2  Score=33.84  Aligned_cols=69  Identities=16%  Similarity=0.265  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++.++...+..   +  .++.++.+|+.+..            ++
T Consensus         4 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (281)
T 3zv4_A            4 TGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAH---G--GNAVGVVGDVRSLQDQKRAAERCLAAFG   78 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---B--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc---C--CcEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence            4567888887765   355556668899999999987766544432   2  56899999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        79 ~iD~lvnnA   87 (281)
T 3zv4_A           79 KIDTLIPNA   87 (281)
T ss_dssp             CCCEEECCC
T ss_pred             CCCEEEECC
Confidence            568888774

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=87.38  E-value=1.5  Score=35.65  Aligned_cols=45  Identities=18%  Similarity=0.273  Sum_probs=37.1

Q ss_pred             cCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           26 SSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        26 ~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      .+++++++||-+|+  |.|..+..+++ .+.+|++++.+++..+.+++
T Consensus       162 ~~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  209 (343)
T 2eih_A          162 LGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA  209 (343)
T ss_dssp             SCCCTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            46778999999998  66777777776 67899999999988887764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=87.35  E-value=1.1  Score=36.13  Aligned_cols=72  Identities=17%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcC----------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEID----------ERMVEILNRRAADSGFHDRLNVISKDALKTE----   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~----------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----   92 (232)
                      .+.++|=.|++.|   .++..|++.+.+|+.+|.+          .+..+...+.+...+  .++.++.+|+.+..    
T Consensus        26 ~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~  103 (322)
T 3qlj_A           26 DGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAG--GEAVADGSNVADWDQAAG  103 (322)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTT--CEEEEECCCTTSHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHH
Confidence            5678888887655   2455555688999999987          555555555555544  57889999998753    


Q ss_pred             --------CCCcceeeccc
Q 047897           93 --------FPQFDLVVANI  103 (232)
Q Consensus        93 --------~~~~D~Vi~n~  103 (232)
                              ++..|++|.|-
T Consensus       104 ~~~~~~~~~g~iD~lv~nA  122 (322)
T 3qlj_A          104 LIQTAVETFGGLDVLVNNA  122 (322)
T ss_dssp             HHHHHHHHHSCCCEEECCC
T ss_pred             HHHHHHHHcCCCCEEEECC
Confidence                    12578888774

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=87.31  E-value=2.7  Score=33.12  Aligned_cols=73  Identities=15%  Similarity=0.162  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++. +++..+...+.+.... ..++.++.+|+.+..            +
T Consensus        24 ~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  102 (281)
T 3v2h_A           24 MTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLS-SGTVLHHPADMTKPSEIADMMAMVADRF  102 (281)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTC-SSCEEEECCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhcc-CCcEEEEeCCCCCHHHHHHHHHHHHHHC
Confidence            46688888876652   55555668899999998 6666665555554331 157899999998752            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|-
T Consensus       103 g~iD~lv~nA  112 (281)
T 3v2h_A          103 GGADILVNNA  112 (281)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            3578888774

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=86.92  E-value=3.1  Score=32.29  Aligned_cols=73  Identities=15%  Similarity=0.184  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-.+.+.+.+...+- .++.++.+|+.+..            ++
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGS-GKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSS-SCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCC-CcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            4667777776554   24445555789999999999888777776665442 47999999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        88 ~id~lvnnA   96 (262)
T 3pk0_A           88 GIDVVCANA   96 (262)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=86.80  E-value=1.2  Score=36.20  Aligned_cols=47  Identities=19%  Similarity=0.174  Sum_probs=37.1

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +..+++++++||-.|+  |.|..+..+++ .+.+|++++.+++..+.+++
T Consensus       149 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  198 (345)
T 2j3h_A          149 EVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKT  198 (345)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHhCCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            4567789999999997  56666666666 67899999999887777653

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.61  E-value=3.5  Score=31.77  Aligned_cols=74  Identities=16%  Similarity=0.195  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-++.+.+.+...... .++.++.+|+.+..            +
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY   85 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence            4567888887665   255556667899999999998877776666544211 46889999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus        86 g~iD~lvnnA   95 (250)
T 3nyw_A           86 GAVDILVNAA   95 (250)
T ss_dssp             CCEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888774

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=86.61  E-value=1.9  Score=31.21  Aligned_cols=43  Identities=19%  Similarity=0.295  Sum_probs=31.4

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEc
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEI   60 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~   60 (232)
                      ..++..+......+| -|||+|-|.|..=-.+.+  +..+++++|.
T Consensus        28 ~~L~~a~~~v~~~~G-pVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           28 ACLEHAIAQTAGLSG-PVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             HHHHHHHHHTTTCCS-CEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             HHHHHHHHHhcCCCC-ceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            344445555544444 699999999998888877  6789999984

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=86.61  E-value=3.4  Score=32.24  Aligned_cols=70  Identities=19%  Similarity=0.190  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-------CCccee
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-------PQFDLV   99 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~D~V   99 (232)
                      +|+++|=-|.+.|.   ++..|++.+.+|+..|.+..  +.+.+.....+  .++..+.+|+.+...       ...|++
T Consensus         8 ~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~--~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~g~iDiL   83 (247)
T 4hp8_A            8 EGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAP--DETLDIIAKDG--GNASALLIDFADPLAAKDSFTDAGFDIL   83 (247)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence            47778877877763   56666668999999998853  23333444444  568899999987532       257988


Q ss_pred             eccc
Q 047897          100 VANI  103 (232)
Q Consensus       100 i~n~  103 (232)
                      +.|-
T Consensus        84 VNNA   87 (247)
T 4hp8_A           84 VNNA   87 (247)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            8773

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=86.60  E-value=1.9  Score=34.00  Aligned_cols=72  Identities=18%  Similarity=0.207  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------PQ   95 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~   95 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++..+.+.+.+...+  .++.++.+|+.+...           ..
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g~  109 (275)
T 4imr_A           32 RGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIAP  109 (275)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence            46678877766552   455555578999999999877776666665544  579999999987632           25


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|++|.|-
T Consensus       110 iD~lvnnA  117 (275)
T 4imr_A          110 VDILVINA  117 (275)
T ss_dssp             CCEEEECC
T ss_pred             CCEEEECC
Confidence            78888774

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=86.51  E-value=1.6  Score=34.70  Aligned_cols=72  Identities=15%  Similarity=0.189  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCc----c-HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           30 PDDTVLEIGPGT----G-NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~----G-~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      .+.++|=.|++.    | .++..|++.+.+|+.++.++...+.+.+.....+   ++.++.+|+.+..            
T Consensus        29 ~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           29 EGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            466888888743    3 2566666689999999999876666655554443   4678999998753            


Q ss_pred             CCCcceeecccC
Q 047897           93 FPQFDLVVANIP  104 (232)
Q Consensus        93 ~~~~D~Vi~n~p  104 (232)
                      ++..|++|.|.-
T Consensus       106 ~g~iD~lVnnAG  117 (296)
T 3k31_A          106 WGSLDFVVHAVA  117 (296)
T ss_dssp             HSCCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence            125788888753

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=86.33  E-value=2.2  Score=33.51  Aligned_cols=71  Identities=20%  Similarity=0.222  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+...+.+...   +++.++.+|+.+..            ++
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAY---GDCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTS---SCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            4667888886554   244445557899999999987766555555432   26888899987742            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       105 ~iD~lvnnA  113 (276)
T 2b4q_A          105 RLDILVNNA  113 (276)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=86.27  E-value=0.96  Score=36.35  Aligned_cols=47  Identities=21%  Similarity=0.314  Sum_probs=37.2

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +..+++++++||=+|+|. |.++..+++ .+.+|++++ +++-.+.+++.
T Consensus       136 ~~~~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l  184 (315)
T 3goh_A          136 EKIPLTKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR  184 (315)
T ss_dssp             TTSCCCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH
T ss_pred             hhcCCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc
Confidence            556788999999999953 667777776 678999999 88877877663

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=86.24  E-value=2.2  Score=35.04  Aligned_cols=47  Identities=17%  Similarity=0.245  Sum_probs=37.8

Q ss_pred             HhcCCCCCCEEEEEc--CCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIG--PGTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG--~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +..+++++++||-+|  .|.|..+..+++ .+.+|++++.+++-.+.+++
T Consensus       157 ~~~~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~  206 (362)
T 2c0c_A          157 ELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS  206 (362)
T ss_dssp             HHTCCCTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            445778999999999  466777777776 67899999999888877765

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=86.21  E-value=4.8  Score=31.22  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..|++.+.+|++++.+++-.+.+.+.+.......++.++.+|+.+..            ++
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   91 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   91 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4667888887655   24455555789999999998776665555543311146889999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        92 ~id~lv~nA  100 (267)
T 1iy8_A           92 RIDGFFNNA  100 (267)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            468888774

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=85.92  E-value=2.5  Score=33.03  Aligned_cols=70  Identities=16%  Similarity=0.164  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++.++.+.+..   +  .++.++.+|+.+..            ++
T Consensus        26 ~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (266)
T 3grp_A           26 TGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADL---G--KDVFVFSANLSDRKSIKQLAEVAEREME  100 (266)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--SSEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            4667887786655   245555567899999999987666554433   3  46899999998753            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|.-
T Consensus       101 ~iD~lvnnAg  110 (266)
T 3grp_A          101 GIDILVNNAG  110 (266)
T ss_dssp             SCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            5788888753

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=85.75  E-value=1.7  Score=34.38  Aligned_cols=72  Identities=17%  Similarity=0.215  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++.++.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGG--GEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTT--CCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4667887887655   2555556688999999999988777766665544  57899999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        85 ~iD~lvnnA   93 (280)
T 3tox_A           85 GLDTAFNNA   93 (280)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=85.71  E-value=2.1  Score=33.66  Aligned_cols=69  Identities=16%  Similarity=0.245  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++.++.+.+.+   +  .++.++.+|+.+..            ++
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  101 (272)
T 4dyv_A           27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEI---G--DDALCVPTDVTDPDSVRALFTATVEKFG  101 (272)
T ss_dssp             -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---T--SCCEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            4567777776554   244555557899999999987766555544   2  46889999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus       102 ~iD~lVnnA  110 (272)
T 4dyv_A          102 RVDVLFNNA  110 (272)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=85.67  E-value=2.5  Score=33.40  Aligned_cols=69  Identities=20%  Similarity=0.184  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|++++.++.-.+.+.+.+     ..++.++.+|+.+..        ....|+
T Consensus        15 ~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~   89 (291)
T 3rd5_A           15 AQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTM-----AGQVEVRELDLQDLSSVRRFADGVSGADV   89 (291)
T ss_dssp             TTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS-----SSEEEEEECCTTCHHHHHHHHHTCCCEEE
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----cCCeeEEEcCCCCHHHHHHHHHhcCCCCE
Confidence            46788888866542   44445557899999999987665544332     257999999998753        125688


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      +|.|.
T Consensus        90 lv~nA   94 (291)
T 3rd5_A           90 LINNA   94 (291)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=85.67  E-value=4.8  Score=31.12  Aligned_cols=69  Identities=19%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++.++...+..   +  .++.++.+|+.+..            ++
T Consensus         7 ~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (255)
T 4eso_A            7 QGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTLG   81 (255)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46788888876652   55555668899999999988776665554   2  57899999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|-
T Consensus        82 ~id~lv~nA   90 (255)
T 4eso_A           82 AIDLLHINA   90 (255)
T ss_dssp             SEEEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=85.66  E-value=3.8  Score=31.95  Aligned_cols=72  Identities=21%  Similarity=0.232  Sum_probs=50.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++. ++...+...+.+...+  .++.++.+|+.+..            .
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKG--YKAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            46678877876552   45555557899999998 5666666666666554  46999999998752            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|.+|.|.
T Consensus       106 g~id~li~nA  115 (271)
T 4iin_A          106 GGLSYLVNNA  115 (271)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888774

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=85.63  E-value=4.9  Score=31.03  Aligned_cols=72  Identities=15%  Similarity=0.229  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc-CCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADS-GFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~-~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++-.+.+.+.+... +  .++.++.+|+.+..            +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFG--VRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3567887776554   244445557899999999987666555444332 3  46889999998752            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus        84 g~id~lv~~A   93 (263)
T 3ai3_A           84 GGADILVNNA   93 (263)
T ss_dssp             SSCSEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888775

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=85.62  E-value=3.9  Score=32.09  Aligned_cols=71  Identities=11%  Similarity=0.180  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++ |.++..    +++.+.+|++++.+++-++.+.+.+...+. .++.++.+|+.+..            .
T Consensus        27 ~~k~vlITGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           27 QGKKVIVTGAS-KGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCC-CceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            35678877765 444444    444789999999998877766655544432 36899999998742            1


Q ss_pred             CCcceeecc
Q 047897           94 PQFDLVVAN  102 (232)
Q Consensus        94 ~~~D~Vi~n  102 (232)
                      +..|++|.|
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            257888866

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=85.56  E-value=2  Score=35.16  Aligned_cols=46  Identities=17%  Similarity=0.242  Sum_probs=35.7

Q ss_pred             hcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           25 KSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..+++++++||-.|+  |.|..+..+++ .+.+|++++.+++-.+.+++
T Consensus       165 ~~~~~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  213 (351)
T 1yb5_A          165 SACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ  213 (351)
T ss_dssp             TSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH
Confidence            457788999999997  45666666665 68899999999987776654

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=85.47  E-value=3.9  Score=31.26  Aligned_cols=71  Identities=11%  Similarity=0.160  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|+ +|.++..++    +.+.+|++++.+++..+...+.+...+  .++.++.+|+.+..            +
T Consensus        10 ~~~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITGA-GAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            3567776664 455555544    468899999999877666555555444  46889999997642            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ..+|.||.|.
T Consensus        87 ~~~d~vi~~A   96 (255)
T 1fmc_A           87 GKVDILVNNA   96 (255)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888764

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=85.42  E-value=1.7  Score=35.14  Aligned_cols=48  Identities=13%  Similarity=0.196  Sum_probs=37.3

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +..+++++++||=+|+  |.|..+..+++ .+.+|++++.+++-.+.+++.
T Consensus       134 ~~~~~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  184 (325)
T 3jyn_A          134 QTYQVKPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL  184 (325)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc
Confidence            3456788999999983  45667766666 688999999999888877653

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=85.37  E-value=1.8  Score=35.26  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=35.5

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~   70 (232)
                      +..++ ++++||-+|+|. |..+..+++ .+. +|++++.+++-.+.+++
T Consensus       162 ~~~~~-~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~  210 (348)
T 2d8a_A          162 LAGPI-SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKK  210 (348)
T ss_dssp             TTSCC-TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHH
T ss_pred             HhcCC-CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            45567 899999999853 556666665 566 99999999988887764

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=85.30  E-value=5.6  Score=30.05  Aligned_cols=71  Identities=20%  Similarity=0.181  Sum_probs=48.8

Q ss_pred             CCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHh-hcCCCccEEEEEcCCCCCC------------CC
Q 047897           31 DDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAA-DSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        31 ~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +.++|=.|++.|   .++..+++.+.+|+.++.+++-.+.+.+.+. ..+  .++.++.+|+.+..            ++
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQG--VEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcC--CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            456777776554   2444555578999999999887766655553 333  46999999998753            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        80 ~id~li~~A   88 (235)
T 3l77_A           80 DVDVVVANA   88 (235)
T ss_dssp             SCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=85.23  E-value=1.5  Score=35.81  Aligned_cols=48  Identities=23%  Similarity=0.429  Sum_probs=38.5

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +...++++++||=+|+  |.|..+..+++ .+.+|++++.+++-.+.+++.
T Consensus       153 ~~~~~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~  203 (342)
T 4eye_A          153 RRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV  203 (342)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            4567788999999997  55677777776 678999999999888877763

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=85.23  E-value=0.32  Score=39.12  Aligned_cols=30  Identities=23%  Similarity=0.170  Sum_probs=23.6

Q ss_pred             ccEEEEEcCCCCC----CCCCcceeecccCcccc
Q 047897           79 DRLNVISKDALKT----EFPQFDLVVANIPYGIS  108 (232)
Q Consensus        79 ~~~~~~~~D~~~~----~~~~~D~Vi~n~p~~~~  108 (232)
                      ++.+++++|+++.    +.+++|+|++||||...
T Consensus        20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~   53 (297)
T 2zig_A           20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTL   53 (297)
T ss_dssp             -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCC
T ss_pred             cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCc
Confidence            4678999999873    33489999999999754

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=84.79  E-value=4.5  Score=31.68  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC-CccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF-HDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+.+.+.+...+. ..++.++.+|+.+..            +
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   84 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHhc
Confidence            3567777776544   24444555789999999998877666555544331 126899999998752            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus        85 g~iD~lv~nA   94 (280)
T 1xkq_A           85 GKIDVLVNNA   94 (280)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888874

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=84.75  E-value=2.2  Score=33.40  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHH-------HHHHHHHHhhcCCCccEEEEEcCCCCCC-------
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERM-------VEILNRRAADSGFHDRLNVISKDALKTE-------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~-------~~~a~~~~~~~~~~~~~~~~~~D~~~~~-------   92 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+.+-       ++...+.....+  .++.++.+|+.+..       
T Consensus         5 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~   82 (274)
T 3e03_A            5 SGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAG--GQGLALKCDIREEDQVRAAVA   82 (274)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHT--SEEEEEECCTTCHHHHHHHHH
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHH
Confidence            4668888888766   3555566688999999988642       333333333333  57999999998753       


Q ss_pred             -----CCCcceeeccc
Q 047897           93 -----FPQFDLVVANI  103 (232)
Q Consensus        93 -----~~~~D~Vi~n~  103 (232)
                           ++..|++|.|.
T Consensus        83 ~~~~~~g~iD~lvnnA   98 (274)
T 3e03_A           83 ATVDTFGGIDILVNNA   98 (274)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence                 12578888874

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=84.70  E-value=3.2  Score=33.67  Aligned_cols=49  Identities=20%  Similarity=0.407  Sum_probs=36.7

Q ss_pred             HHhcCCCCCCEEEEEcCCccH-hHHHHHh--cCCeEEEEEcCHHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPGTGN-LTLKLLE--VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~G~-~t~~l~~--~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      ++...++++++||=+|+|.+. ++..+++  .+.+|+++|.+++-.+.+++.
T Consensus       156 l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~  207 (348)
T 4eez_A          156 IKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKI  207 (348)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHT
T ss_pred             ecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhc
Confidence            455677899999999998754 4444444  478999999999877766554

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=84.70  E-value=2.4  Score=32.90  Aligned_cols=72  Identities=14%  Similarity=0.113  Sum_probs=49.4

Q ss_pred             CCCCEEEEEcCC-ccH----hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------
Q 047897           29 NPDDTVLEIGPG-TGN----LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------   92 (232)
Q Consensus        29 ~~~~~vLDiG~G-~G~----~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------   92 (232)
                      .++.+||=.|++ +|.    ++..+++.+.+|+.++.+....+.+++.....   +++.++.+|+.+..           
T Consensus        12 ~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~   88 (271)
T 3ek2_A           12 LDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEF---GSELVFPCDVADDAQIDALFASLKT   88 (271)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHc---CCcEEEECCCCCHHHHHHHHHHHHH
Confidence            357789988864 233    44555557899999998876666665555443   34788999998753           


Q ss_pred             -CCCcceeeccc
Q 047897           93 -FPQFDLVVANI  103 (232)
Q Consensus        93 -~~~~D~Vi~n~  103 (232)
                       ++..|++|.|.
T Consensus        89 ~~g~id~lv~nA  100 (271)
T 3ek2_A           89 HWDSLDGLVHSI  100 (271)
T ss_dssp             HCSCEEEEEECC
T ss_pred             HcCCCCEEEECC
Confidence             12568888774

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=84.69  E-value=1.9  Score=36.03  Aligned_cols=45  Identities=27%  Similarity=0.367  Sum_probs=35.2

Q ss_pred             CCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           27 SINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      ++.++++||=+|+|. |.++..+++ .+. +|+++|.+++-.+.+++.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            577899999999854 556666666 566 999999999888887654

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=84.68  E-value=5.8  Score=31.01  Aligned_cols=72  Identities=15%  Similarity=0.157  Sum_probs=49.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcC------------HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEID------------ERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~------------~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+            .+.++...+.....+  .++.++.+|+.+..  
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTG--RRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHH
Confidence            4678888887665   2555556688999999986            455555555554444  57999999998752  


Q ss_pred             ----------CCCcceeeccc
Q 047897           93 ----------FPQFDLVVANI  103 (232)
Q Consensus        93 ----------~~~~D~Vi~n~  103 (232)
                                ++..|++|.|-
T Consensus        87 ~~~~~~~~~~~g~id~lv~nA  107 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNA  107 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECC
T ss_pred             HHHHHHHHHhcCCCCEEEECC
Confidence                      12578888774

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=84.67  E-value=7.5  Score=30.93  Aligned_cols=72  Identities=19%  Similarity=0.143  Sum_probs=46.9

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEE-EcCCCCCCC-----CCccee
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVI-SKDALKTEF-----PQFDLV   99 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~-~~D~~~~~~-----~~~D~V   99 (232)
                      ++.+||=.| |+|.++..+++    .+.+|++++.++.-.+.+.+.+.... ..+++++ .+|+.+...     ..+|.|
T Consensus        10 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A           10 EGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            466788777 45666665544    68899999998776554444432211 1468888 799876532     257888


Q ss_pred             eccc
Q 047897          100 VANI  103 (232)
Q Consensus       100 i~n~  103 (232)
                      |.+.
T Consensus        88 ih~A   91 (342)
T 1y1p_A           88 AHIA   91 (342)
T ss_dssp             EECC
T ss_pred             EEeC
Confidence            8764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=84.52  E-value=5  Score=30.95  Aligned_cols=72  Identities=15%  Similarity=0.127  Sum_probs=48.3

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..|++.+.+|++++.+++-.+...+.+...+  .++.++.+|+.+..            ++
T Consensus        13 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   90 (260)
T 2zat_A           13 ENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEG--LSVTGTVCHVGKAEDRERLVAMAVNLHG   90 (260)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            4567777775544   2444445578999999999877665555554444  46888999987642            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        91 ~iD~lv~~A   99 (260)
T 2zat_A           91 GVDILVSNA   99 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=84.49  E-value=4  Score=31.95  Aligned_cols=68  Identities=13%  Similarity=0.195  Sum_probs=48.0

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------CCC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------FPQ   95 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~   95 (232)
                      .+.++|=.|++.|   .++..+++.+.+|+.++.+++-++.+.+.+   +  .++.++.+|+.+..           +..
T Consensus        29 ~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~  103 (281)
T 3ppi_A           29 EGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADEL---G--NRAEFVSTNVTSEDSVLAAIEAANQLGR  103 (281)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHTTSSE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh---C--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence            4567888887665   255555568899999999988776655554   2  56999999998752           124


Q ss_pred             cceeecc
Q 047897           96 FDLVVAN  102 (232)
Q Consensus        96 ~D~Vi~n  102 (232)
                      .|.++.|
T Consensus       104 id~lv~~  110 (281)
T 3ppi_A          104 LRYAVVA  110 (281)
T ss_dssp             EEEEEEC
T ss_pred             CCeEEEc
Confidence            6777765

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=84.45  E-value=4.8  Score=31.52  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=47.6

Q ss_pred             CEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCc
Q 047897           32 DTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQF   96 (232)
Q Consensus        32 ~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~   96 (232)
                      .++|=.|++.|   .++..|++.+.+|++++.+++.++.+.+.+...   .++.++.+|+.+..            ++..
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   98 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAK---TRVLPLTLDVRDRAAMSAAVDNLPEEFATL   98 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT---SCEEEEECCTTCHHHHHHHHHTCCGGGSSC
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcC---CcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence            56787776554   255555668899999999987776655554322   36889999997642            1246


Q ss_pred             ceeeccc
Q 047897           97 DLVVANI  103 (232)
Q Consensus        97 D~Vi~n~  103 (232)
                      |++|.|.
T Consensus        99 D~lvnnA  105 (272)
T 2nwq_A           99 RGLINNA  105 (272)
T ss_dssp             CEEEECC
T ss_pred             CEEEECC
Confidence            8888875

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=84.32  E-value=5.2  Score=30.33  Aligned_cols=67  Identities=19%  Similarity=0.195  Sum_probs=43.5

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcc
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFD   97 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D   97 (232)
                      .+.++|=.|++ |.++..    +++.+.+|++++.++.-.+...+..      .+++++.+|+.+..        .+..|
T Consensus         6 ~~~~vlVTGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~id   78 (244)
T 1cyd_A            6 SGLRALVTGAG-KGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVD   78 (244)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc------cCCCcEEecCCCHHHHHHHHHHcCCCC
Confidence            45678877754 444444    4447899999999986655433321      24667789987642        23578


Q ss_pred             eeeccc
Q 047897           98 LVVANI  103 (232)
Q Consensus        98 ~Vi~n~  103 (232)
                      .|+.|.
T Consensus        79 ~vi~~A   84 (244)
T 1cyd_A           79 LLVNNA   84 (244)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            888774

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=84.16  E-value=2  Score=34.74  Aligned_cols=45  Identities=20%  Similarity=0.290  Sum_probs=35.7

Q ss_pred             cCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           26 SSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        26 ~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..++++++||=+|+  |.|..+..+++ .+.+|++++.+++-.+.+++
T Consensus       144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  191 (334)
T 3qwb_A          144 YHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE  191 (334)
T ss_dssp             SCCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            46788999999994  45666666666 68899999999988877765

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=84.07  E-value=3  Score=33.15  Aligned_cols=73  Identities=18%  Similarity=0.217  Sum_probs=51.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|+.++.+++-.+.+.+.+...+. .++.++.+|+.+..            ++
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGA-GNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSS-SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCC-CcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            45678877765552   4555555789999999998877776666655442 47899999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus       119 ~iD~lvnnA  127 (293)
T 3rih_A          119 ALDVVCANA  127 (293)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            568888774

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=84.05  E-value=1.6  Score=37.48  Aligned_cols=83  Identities=23%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CCHHHHHHHHHhcCC--CCCCEEEEEcCCccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSI--NPDDTVLEIGPGTGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~--~~~~~vLDiG~G~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ..++-++.+.+.+..  .+-.+|+=+|.|.-+ .....++....|..+|.|++.++.+.+.+      ++..+++||+.+
T Consensus       216 ~~~~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~L~~~~~v~iIE~d~~r~~~la~~l------~~~~Vi~GD~td  289 (461)
T 4g65_A          216 AASNHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKRLEQTYSVKLIERNLQRAEKLSEEL------ENTIVFCGDAAD  289 (461)
T ss_dssp             EETTTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHC------TTSEEEESCTTC
T ss_pred             eccchHHHHHHhhccccccccEEEEEcchHHHHHHHHHhhhcCceEEEecCHHHHHHHHHHC------CCceEEeccccc
Confidence            344555666666543  234578877776533 22223335689999999999988887776      468899999988


Q ss_pred             CC------CCCcceeecc
Q 047897           91 TE------FPQFDLVVAN  102 (232)
Q Consensus        91 ~~------~~~~D~Vi~n  102 (232)
                      ..      .+..|.+++-
T Consensus       290 ~~~L~ee~i~~~D~~ia~  307 (461)
T 4g65_A          290 QELLTEENIDQVDVFIAL  307 (461)
T ss_dssp             HHHHHHTTGGGCSEEEEC
T ss_pred             hhhHhhcCchhhcEEEEc
Confidence            53      2367877763

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=83.97  E-value=5.7  Score=33.55  Aligned_cols=74  Identities=19%  Similarity=0.253  Sum_probs=47.5

Q ss_pred             CCCCCEEEEEcCCccH-h----HHHHHhcCCeEEEEEcCHHH------------HHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           28 INPDDTVLEIGPGTGN-L----TLKLLEVSKKVHAIEIDERM------------VEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~-~----t~~l~~~~~~v~~vD~~~~~------------~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ...+.++|=.|+++|. .    +..+++.+.+|++++.+...            .+.+.+.....|  .++..+.+|+.+
T Consensus        57 ~~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dvtd  134 (418)
T 4eue_A           57 FRGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKG--LVAKNFIEDAFS  134 (418)
T ss_dssp             CCCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTT--CCEEEEESCTTC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcC--CcEEEEEeeCCC
Confidence            4567889999988774 2    22233358999999876422            233344444444  458899999987


Q ss_pred             CC------------CCCcceeeccc
Q 047897           91 TE------------FPQFDLVVANI  103 (232)
Q Consensus        91 ~~------------~~~~D~Vi~n~  103 (232)
                      ..            +...|++|.|.
T Consensus       135 ~~~v~~~v~~i~~~~G~IDiLVnNA  159 (418)
T 4eue_A          135 NETKDKVIKYIKDEFGKIDLFVYSL  159 (418)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             HHHHHHHHHHHHHHcCCCCEEEECC
Confidence            52            23678888774

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=83.95  E-value=2.8  Score=33.87  Aligned_cols=73  Identities=22%  Similarity=0.172  Sum_probs=40.5

Q ss_pred             CCEEEEEcCCccHhHHHHHh------cCC--eEEEEEcCH---------HHHHHHHHHHhhcC-C-Cc--cEEEEEcCCC
Q 047897           31 DDTVLEIGPGTGNLTLKLLE------VSK--KVHAIEIDE---------RMVEILNRRAADSG-F-HD--RLNVISKDAL   89 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~------~~~--~v~~vD~~~---------~~~~~a~~~~~~~~-~-~~--~~~~~~~D~~   89 (232)
                      .-+|||+|-|+|......+.      ...  +++++|.++         ...+..+....... . .+  .+++..||+.
T Consensus        97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~  176 (308)
T 3vyw_A           97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR  176 (308)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred             CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence            34799999999986544332      223  467777642         11222222222110 0 12  3567889986


Q ss_pred             CC----CCCCcceeeccc
Q 047897           90 KT----EFPQFDLVVANI  103 (232)
Q Consensus        90 ~~----~~~~~D~Vi~n~  103 (232)
                      +.    +...+|+++.+.
T Consensus       177 ~~l~~l~~~~~Da~flDg  194 (308)
T 3vyw_A          177 KRIKEVENFKADAVFHDA  194 (308)
T ss_dssp             HHGGGCCSCCEEEEEECC
T ss_pred             HHHhhhcccceeEEEeCC
Confidence            53    223689999873

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=83.87  E-value=5.5  Score=30.20  Aligned_cols=68  Identities=24%  Similarity=0.262  Sum_probs=43.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      ++.++|=.|++.|.   ++..+++.+.+|++++.+++-.+...+..      .+.+++.+|+.+..        .+..|.
T Consensus         6 ~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~id~   79 (244)
T 3d3w_A            6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc------CCCCEEEEeCCCHHHHHHHHHHcCCCCE
Confidence            45678877765442   44444557899999999986655443322      23567789987642        235788


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      ||.|.
T Consensus        80 vi~~A   84 (244)
T 3d3w_A           80 LVNNA   84 (244)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88764

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=83.80  E-value=2.2  Score=33.45  Aligned_cols=71  Identities=18%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|.   ++..+++.+.+|+.++.+.+-.+.+.+.. ..+  .++.++.+|+.+..            +.
T Consensus         6 ~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~-~~~--~~~~~~~~Dv~~~~~v~~~v~~~~~~~G   82 (258)
T 4gkb_A            6 QDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALA-QRQ--PRATYLPVELQDDAQCRDAVAQTIATFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHH-HHC--TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHH-hcC--CCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            57788888988774   56667778999999998876555444433 333  46889999998752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|-
T Consensus        83 ~iDiLVNnA   91 (258)
T 4gkb_A           83 RLDGLVNNA   91 (258)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888773

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=83.65  E-value=5.7  Score=31.36  Aligned_cols=72  Identities=14%  Similarity=0.260  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHH-HHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDER-MVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+.. ..+.+.+.....+  .++.++.+|+.+..            +
T Consensus        46 ~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           46 KGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46788888876652   55555668899999998865 4444555555444  57999999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus       124 g~iD~lvnnA  133 (291)
T 3ijr_A          124 GSLNILVNNV  133 (291)
T ss_dssp             SSCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888773

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=83.47  E-value=6.7  Score=30.33  Aligned_cols=75  Identities=17%  Similarity=0.165  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++..+.+.+.+.......++.++.+|+.+..            ++
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (267)
T 2gdz_A            6 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   85 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence            4567888886544   24444555789999999998766555444432211146889999998752            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|.-
T Consensus        86 ~id~lv~~Ag   95 (267)
T 2gdz_A           86 RLDILVNNAG   95 (267)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            4688888753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=83.44  E-value=5.5  Score=31.07  Aligned_cols=72  Identities=19%  Similarity=0.266  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++. +++..+...+.+...+  .++.++.+|+.+..            +
T Consensus        27 ~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~v~~~~~~~~~~~  104 (269)
T 4dmm_A           27 TDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAG--GEAFAVKADVSQESEVEALFAAVIERW  104 (269)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            46678877766542   45555558899999988 6666666666665544  46899999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus       105 g~id~lv~nA  114 (269)
T 4dmm_A          105 GRLDVLVNNA  114 (269)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888874

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=83.44  E-value=4  Score=31.37  Aligned_cols=69  Identities=16%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCH-HHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDE-RMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.++ +-.+.   .+...+  .++.++.+|+.+..            +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~---~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (249)
T 2ew8_A            6 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEA---AIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTF   80 (249)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHH---HHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHH---HHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            4567888886554   24444555789999999887 54432   222223  46889999997752            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus        81 g~id~lv~nA   90 (249)
T 2ew8_A           81 GRCDILVNNA   90 (249)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            3578888774

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=83.39  E-value=6.9  Score=30.41  Aligned_cols=73  Identities=18%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHH-hhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRA-ADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..|++.+.+|++++.+++-++.+.+.+ ...+  .++.++.+|+.+..            +
T Consensus        20 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~   97 (267)
T 1vl8_A           20 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEKF   97 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            4567888886554   244445557899999999987666554444 3333  46888999997742            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      +..|++|.|.-
T Consensus        98 g~iD~lvnnAg  108 (267)
T 1vl8_A           98 GKLDTVVNAAG  108 (267)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            25788887743

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=83.38  E-value=5.7  Score=30.35  Aligned_cols=71  Identities=20%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCcc---HhHHHHHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           31 DDTVLEIGPGTG---NLTLKLLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        31 ~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +.++|=.|++.|   .++..+++.+.+|++++. +++..+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus         4 ~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (246)
T 2uvd_A            4 GKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLG--SDAIAVRADVANAEDVTNMVKQTVDVFG   81 (246)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            556776665543   234444457899999998 7776665555554443  46889999998752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        82 ~id~lv~nA   90 (246)
T 2uvd_A           82 QVDILVNNA   90 (246)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=83.28  E-value=3.2  Score=33.48  Aligned_cols=46  Identities=20%  Similarity=0.293  Sum_probs=36.5

Q ss_pred             hcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           25 KSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..+++++++||-.|+  |.|..+..++. .+.+|++++.+++..+.+++
T Consensus       140 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~  188 (333)
T 1wly_A          140 THKVKPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK  188 (333)
T ss_dssp             TSCCCTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence            456788999999995  66776666665 67899999999988777765

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=83.19  E-value=7.2  Score=29.65  Aligned_cols=69  Identities=19%  Similarity=0.152  Sum_probs=48.9

Q ss_pred             CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897           31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ   95 (232)
Q Consensus        31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   95 (232)
                      +.++|=.|++.|.   ++..+++.+.+|++++.+++.++...+...     .++.++.+|+.+..            ++.
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   77 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLG-----NAVIGIVADLAHHEDVDVAFAAAVEWGGL   77 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGEEEEECCTTSHHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----CCceEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            4567878876552   455556688999999999887776665552     35889999998752            125


Q ss_pred             cceeecccC
Q 047897           96 FDLVVANIP  104 (232)
Q Consensus        96 ~D~Vi~n~p  104 (232)
                      .|++|.|.-
T Consensus        78 id~lvnnAg   86 (235)
T 3l6e_A           78 PELVLHCAG   86 (235)
T ss_dssp             CSEEEEECC
T ss_pred             CcEEEECCC
Confidence            688887743

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=83.13  E-value=6  Score=30.37  Aligned_cols=66  Identities=23%  Similarity=0.326  Sum_probs=43.1

Q ss_pred             EEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCcc
Q 047897           33 TVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQFD   97 (232)
Q Consensus        33 ~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~D   97 (232)
                      ++|=.|++.|   .++..+++.+.+|++++.+++.++.+.+.+.     .++.++.+|+.+..            ++..|
T Consensus         2 ~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   76 (248)
T 3asu_A            2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELG-----DNLYIAQLDVRNRAAIEEMLASLPAEWCNID   76 (248)
T ss_dssp             EEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----TTEEEEECCTTCHHHHHHHHHTSCTTTCCCC
T ss_pred             EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----CceEEEEcCCCCHHHHHHHHHHHHHhCCCCC
Confidence            3454554433   2445555578999999999876665544432     36889999987642            23578


Q ss_pred             eeeccc
Q 047897           98 LVVANI  103 (232)
Q Consensus        98 ~Vi~n~  103 (232)
                      ++|.|.
T Consensus        77 ~lvnnA   82 (248)
T 3asu_A           77 ILVNNA   82 (248)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            888764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=83.13  E-value=4.6  Score=31.26  Aligned_cols=72  Identities=13%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEE-EcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAI-EIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.+ +.+++..+.+.+.+...+  .++.++.+|+.+..            +
T Consensus         7 ~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (259)
T 3edm_A            7 TNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADKF   84 (259)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            46788888876652   555566688999988 666666666666665544  56889999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|+++.|-
T Consensus        85 g~id~lv~nA   94 (259)
T 3edm_A           85 GEIHGLVHVA   94 (259)
T ss_dssp             CSEEEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888764

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=83.11  E-value=2.1  Score=35.00  Aligned_cols=48  Identities=21%  Similarity=0.284  Sum_probs=37.2

Q ss_pred             HhcCCCCCCEEEEEc--CCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIG--PGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG--~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +...++++++||=+|  .|.|..+..+++ .+.+|++++.+++-.+.+++.
T Consensus       161 ~~~~~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l  211 (353)
T 4dup_A          161 QMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL  211 (353)
T ss_dssp             TTTCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc
Confidence            456778899999985  345666666666 688999999999988887763

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=83.10  E-value=1.6  Score=34.78  Aligned_cols=43  Identities=14%  Similarity=0.197  Sum_probs=34.6

Q ss_pred             CCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           28 INPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        28 ~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ++++++||-+|+  |.|..+..+++ .+.+|++++.+++-.+.+++
T Consensus       123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  168 (302)
T 1iz0_A          123 ARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA  168 (302)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence            788999999997  45667777766 67899999999887777654

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=83.08  E-value=2.2  Score=34.42  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             hcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           25 KSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        25 ~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..+++++++||-.|+  |.|..+..++. .+.+|++++.+++..+.+++
T Consensus       135 ~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~  183 (327)
T 1qor_A          135 TYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALK  183 (327)
T ss_dssp             TSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH
T ss_pred             hhCCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            456788999999993  55666655555 67899999999988877765

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=82.86  E-value=5.5  Score=30.63  Aligned_cols=71  Identities=18%  Similarity=0.103  Sum_probs=48.2

Q ss_pred             CCCEEEEEcCCccHhHHH----HHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------   93 (232)
                      .+.++|=.| |+|.++..    |++ .+.+|++++.++.-.+.+.+.+...+  .++.++.+|+.+...           
T Consensus         3 ~~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~   79 (276)
T 1wma_A            3 GIHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKE   79 (276)
T ss_dssp             CCCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHh
Confidence            456777666 44555444    455 68899999999877766666665444  468899999987421           


Q ss_pred             -CCcceeeccc
Q 047897           94 -PQFDLVVANI  103 (232)
Q Consensus        94 -~~~D~Vi~n~  103 (232)
                       +.+|+||.|.
T Consensus        80 ~g~id~li~~A   90 (276)
T 1wma_A           80 YGGLDVLVNNA   90 (276)
T ss_dssp             HSSEEEEEECC
T ss_pred             cCCCCEEEECC
Confidence             2578888764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=82.54  E-value=0.95  Score=31.29  Aligned_cols=65  Identities=18%  Similarity=0.330  Sum_probs=41.6

Q ss_pred             CCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi  100 (232)
                      +.+|+=+|+  |.++..+++    .+.+|+++|.+++..+.++    ..    ...++.+|..+..      ....|.|+
T Consensus         6 ~~~v~I~G~--G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~----~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi   75 (144)
T 2hmt_A            6 NKQFAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYA----SY----ATHAVIANATEENELLSLGIRNFEYVI   75 (144)
T ss_dssp             CCSEEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTT----TT----CSEEEECCTTCHHHHHTTTGGGCSEEE
T ss_pred             CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----Hh----CCEEEEeCCCCHHHHHhcCCCCCCEEE
Confidence            456888886  555555544    5788999999986554332    11    2356778775421      23678888


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      ...+.
T Consensus        76 ~~~~~   80 (144)
T 2hmt_A           76 VAIGA   80 (144)
T ss_dssp             ECCCS
T ss_pred             ECCCC
Confidence            77664

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=82.53  E-value=7.3  Score=29.60  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=46.5

Q ss_pred             CCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHH-hhcCCCccEEEEEcCCCCCCC------------
Q 047897           31 DDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRA-ADSGFHDRLNVISKDALKTEF------------   93 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~D~~~~~~------------   93 (232)
                      +.++|=.|++ |.++..    +++.+.+|++++.++.-.+...+.+ ...+  .++.++.+|+.+...            
T Consensus         2 ~k~vlItGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   78 (250)
T 2cfc_A            2 SRVAIVTGAS-SGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYA--DKVLRVRADVADEGDVNAAIAATMEQF   78 (250)
T ss_dssp             CCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTG--GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHh
Confidence            3467777754 444444    4447899999999987666555444 2222  578999999987521            


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|.||.|.
T Consensus        79 ~~id~li~~A   88 (250)
T 2cfc_A           79 GAIDVLVNNA   88 (250)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888774

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=82.50  E-value=2.4  Score=34.72  Aligned_cols=47  Identities=13%  Similarity=0.197  Sum_probs=35.8

Q ss_pred             HhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +..++.++++||-.|+  |.|..+..++. .+.+|++++.+++-.+.+++
T Consensus       156 ~~~~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~  205 (354)
T 2j8z_A          156 LVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEK  205 (354)
T ss_dssp             TTSCCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred             HhcCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence            3456788999999984  45666666655 67899999999988887744

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=82.49  E-value=2.4  Score=30.06  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=41.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC------CCCCcce
Q 047897           29 NPDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT------EFPQFDL   98 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~------~~~~~D~   98 (232)
                      .++.+|+=+|+|.  ++..++    ..+.+|+++|.+++.++.+++   .    ....++.+|..+.      ....+|+
T Consensus        17 ~~~~~v~IiG~G~--iG~~la~~L~~~g~~V~vid~~~~~~~~~~~---~----~g~~~~~~d~~~~~~l~~~~~~~ad~   87 (155)
T 2g1u_A           17 QKSKYIVIFGCGR--LGSLIANLASSSGHSVVVVDKNEYAFHRLNS---E----FSGFTVVGDAAEFETLKECGMEKADM   87 (155)
T ss_dssp             CCCCEEEEECCSH--HHHHHHHHHHHTTCEEEEEESCGGGGGGSCT---T----CCSEEEESCTTSHHHHHTTTGGGCSE
T ss_pred             cCCCcEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHh---c----CCCcEEEecCCCHHHHHHcCcccCCE
Confidence            3567899998754  433333    367899999999875543321   1    1245677776542      1235788


Q ss_pred             eecccCc
Q 047897           99 VVANIPY  105 (232)
Q Consensus        99 Vi~n~p~  105 (232)
                      |+...|.
T Consensus        88 Vi~~~~~   94 (155)
T 2g1u_A           88 VFAFTND   94 (155)
T ss_dssp             EEECSSC
T ss_pred             EEEEeCC
Confidence            8876553

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=82.41  E-value=5.6  Score=30.76  Aligned_cols=72  Identities=15%  Similarity=0.215  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEE-EcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAI-EIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|.   ++..|++.+.+|+.+ +.+++..+...+.+...+  .++.++.+|+.+..            +
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLG--VKVLVVKANVGQPAKIKEMFQQIDETF   80 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45677777765542   444555578999886 788877776666665544  56999999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|-
T Consensus        81 g~id~lv~nA   90 (258)
T 3oid_A           81 GRLDVFVNNA   90 (258)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2568888775

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=82.40  E-value=4.1  Score=33.77  Aligned_cols=85  Identities=15%  Similarity=0.087  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCCCCCCCCcceeecccCcccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDALKTEFPQFDLVVANIPYGIS  108 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~  108 (232)
                      .+.+||.++.+-|.++..++..  .++.+.=|--....++.|+..+++++ ++.+...  .+.....+|+|+..+|-+..
T Consensus        38 ~~~~~~~~~d~~gal~~~~~~~--~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~lpk~~~  113 (375)
T 4dcm_A           38 IRGPVLILNDAFGALSCALAEH--KPYSIGDSYISELATRENLRLNGIDESSVKFLDS--TADYPQQPGVVLIKVPKTLA  113 (375)
T ss_dssp             CCSCEEEECCSSSHHHHHTGGG--CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET--TSCCCSSCSEEEEECCSCHH
T ss_pred             CCCCEEEECCCCCHHHHhhccC--CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc--ccccccCCCEEEEEcCCCHH
Confidence            4568999999999999998753  45556434444556778888888753 3555433  33333478999998886554


Q ss_pred             --hHHHHHHhcC
Q 047897          109 --SPLVAKLVYG  118 (232)
Q Consensus       109 --~~~l~~~~~~  118 (232)
                        ...+..+...
T Consensus       114 ~l~~~L~~l~~~  125 (375)
T 4dcm_A          114 LLEQQLRALRKV  125 (375)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhh
Confidence              2234444443

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=82.29  E-value=5.1  Score=32.50  Aligned_cols=70  Identities=20%  Similarity=0.279  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCccHhHHHHHh----c-CC-eEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCcce
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE----V-SK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~----~-~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~D~   98 (232)
                      .+.+||=.| |+|.++..+++    . +. +|++++.++.-.+...+.+..    .++.++.+|+.+..     +..+|.
T Consensus        20 ~~k~vlVTG-atG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~----~~v~~~~~Dl~d~~~l~~~~~~~D~   94 (344)
T 2gn4_A           20 DNQTILITG-GTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFND----PRMRFFIGDVRDLERLNYALEGVDI   94 (344)
T ss_dssp             TTCEEEEET-TTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCC----TTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCEEEEEC-CCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcC----CCEEEEECCCCCHHHHHHHHhcCCE
Confidence            456788666 56776666655    5 75 999999998766555544431    46999999998753     236798


Q ss_pred             eecccC
Q 047897           99 VVANIP  104 (232)
Q Consensus        99 Vi~n~p  104 (232)
                      ||.+..
T Consensus        95 Vih~Aa  100 (344)
T 2gn4_A           95 CIHAAA  100 (344)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            887654

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=82.29  E-value=4  Score=32.00  Aligned_cols=72  Identities=11%  Similarity=0.185  Sum_probs=47.2

Q ss_pred             CCCCEEEEEcCC----ccH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------
Q 047897           29 NPDDTVLEIGPG----TGN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------   92 (232)
Q Consensus        29 ~~~~~vLDiG~G----~G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------   92 (232)
                      -.+.++|=.|.+    .|. ++..+++.+.+|+.++.+. ..+.+++.....   +++.++.+|+.+..           
T Consensus        24 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~-~~~~~~~l~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~   99 (280)
T 3nrc_A           24 LAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ-FKDRVEKLCAEF---NPAAVLPCDVISDQEIKDLFVELGK   99 (280)
T ss_dssp             TTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT-CHHHHHHHHGGG---CCSEEEECCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch-HHHHHHHHHHhc---CCceEEEeecCCHHHHHHHHHHHHH
Confidence            356788888843    342 6666667889999999987 222333332222   35889999998753           


Q ss_pred             -CCCcceeecccC
Q 047897           93 -FPQFDLVVANIP  104 (232)
Q Consensus        93 -~~~~D~Vi~n~p  104 (232)
                       ++..|++|.|.-
T Consensus       100 ~~g~id~li~nAg  112 (280)
T 3nrc_A          100 VWDGLDAIVHSIA  112 (280)
T ss_dssp             HCSSCCEEEECCC
T ss_pred             HcCCCCEEEECCc
Confidence             235799888753

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=82.27  E-value=3.1  Score=34.02  Aligned_cols=72  Identities=17%  Similarity=0.177  Sum_probs=48.9

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHH-------HHHHHHHHhhcCCCccEEEEEcCCCCCC-------
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERM-------VEILNRRAADSGFHDRLNVISKDALKTE-------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~-------~~~a~~~~~~~~~~~~~~~~~~D~~~~~-------   92 (232)
                      .+.++|=.|++.|.   ++..+++.+.+|+.++.+++-       ++.+.+.+...+  .++.++.+|+.+..       
T Consensus        44 ~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           44 AGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVG--GKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHH
Confidence            46788888877652   555566688999999988652       333334444444  57899999998753       


Q ss_pred             -----CCCcceeeccc
Q 047897           93 -----FPQFDLVVANI  103 (232)
Q Consensus        93 -----~~~~D~Vi~n~  103 (232)
                           ++..|++|.|.
T Consensus       122 ~~~~~~g~iDilVnnA  137 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNA  137 (346)
T ss_dssp             HHHHHHSCCCEEEECC
T ss_pred             HHHHHcCCCCEEEECC
Confidence                 12578888774

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=82.18  E-value=6.6  Score=30.11  Aligned_cols=71  Identities=14%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------   93 (232)
                      .+.++|=.|++ |.++..    +++.+.+|++++. +++..+...+.+...+  .++.++.+|+.+...           
T Consensus         6 ~~k~vlITGas-ggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (261)
T 1gee_A            6 EGKVVVITGSS-TGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             TTCEEEETTCS-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            35677767754 444444    4447899999999 7766655555554433  468899999986521           


Q ss_pred             -CCcceeeccc
Q 047897           94 -PQFDLVVANI  103 (232)
Q Consensus        94 -~~~D~Vi~n~  103 (232)
                       +..|+||.|.
T Consensus        83 ~g~id~li~~A   93 (261)
T 1gee_A           83 FGKLDVMINNA   93 (261)
T ss_dssp             HSCCCEEEECC
T ss_pred             cCCCCEEEECC
Confidence             2578888764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=82.12  E-value=8.3  Score=30.35  Aligned_cols=73  Identities=14%  Similarity=0.086  Sum_probs=48.7

Q ss_pred             CCCEEEEEcCCccHhHHH----HHhcCCeEEEEEcCHHHHHHHHHHHhhcC---CCccEEEEEcCCCCCCC---------
Q 047897           30 PDDTVLEIGPGTGNLTLK----LLEVSKKVHAIEIDERMVEILNRRAADSG---FHDRLNVISKDALKTEF---------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~----l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~~---------   93 (232)
                      .+.++|=.|++ |.++..    +++.+.+|++++.+++..+.+.+.+....   ...++.++.+|+.+...         
T Consensus        17 ~~k~vlVTGas-ggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           17 QGQVAIVTGGA-TGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            45678888864 444444    44478999999999877766555554310   11469999999987521         


Q ss_pred             ---CCcceeeccc
Q 047897           94 ---PQFDLVVANI  103 (232)
Q Consensus        94 ---~~~D~Vi~n~  103 (232)
                         +..|+||.|.
T Consensus        96 ~~~g~id~li~~A  108 (303)
T 1yxm_A           96 DTFGKINFLVNNG  108 (303)
T ss_dssp             HHHSCCCEEEECC
T ss_pred             HHcCCCCEEEECC
Confidence               2478888764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.11  E-value=6.4  Score=29.69  Aligned_cols=67  Identities=19%  Similarity=0.219  Sum_probs=43.9

Q ss_pred             CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE-EEEEcCCCCC---CCCCcceeec
Q 047897           30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRL-NVISKDALKT---EFPQFDLVVA  101 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~~D~~~~---~~~~~D~Vi~  101 (232)
                      .+.+||=.|+ +|.++..++    +.+.+|++++.++.-.+....        .++ +++.+|+.+.   .+...|.||.
T Consensus        20 ~~~~ilVtGa-tG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           20 QGMRVLVVGA-NGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVVF   90 (236)
T ss_dssp             -CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred             CCCeEEEECC-CChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEEE
Confidence            4678887774 455555544    478999999999875543321        247 8999998721   1236799988


Q ss_pred             ccCc
Q 047897          102 NIPY  105 (232)
Q Consensus       102 n~p~  105 (232)
                      +...
T Consensus        91 ~ag~   94 (236)
T 3e8x_A           91 AAGS   94 (236)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7643

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=82.09  E-value=7.2  Score=29.97  Aligned_cols=69  Identities=22%  Similarity=0.302  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------------P   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------------~   94 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++-++.+.+..   +  .++.++.+|+.+...            +
T Consensus         8 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g   82 (261)
T 3n74_A            8 EGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEI---G--DAALAVAADISKEADVDAAVEAALSKFG   82 (261)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh---C--CceEEEEecCCCHHHHHHHHHHHHHhcC
Confidence            4668888887765   255666668899999999988776665544   2  468999999987531            2


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        83 ~id~li~~A   91 (261)
T 3n74_A           83 KVDILVNNA   91 (261)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            568888774

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=82.08  E-value=6.2  Score=30.38  Aligned_cols=71  Identities=13%  Similarity=0.209  Sum_probs=47.0

Q ss_pred             CCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHH--HHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           31 DDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERM--VEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        31 ~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~--~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      +.++|=.|++.|   .++..+++.+.+|++++.+++.  .+...+.+...+  .++.++.+|+.+..            +
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   79 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAAD--QKAVFVGLDVTDKANFDSAIDEAAEKL   79 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            356777776544   2444455578999999998765  554444444433  46889999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus        80 g~iD~lv~nA   89 (258)
T 3a28_C           80 GGFDVLVNNA   89 (258)
T ss_dssp             TCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888874

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.02  E-value=6.6  Score=31.14  Aligned_cols=74  Identities=18%  Similarity=0.349  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC-CccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF-HDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~~D~~~~~------------~   93 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.+++-++...+.+...+. ..++.++.+|+.+..            +
T Consensus        25 ~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  104 (297)
T 1xhl_A           25 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF  104 (297)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence            4567777776544   24444455789999999998777666555544331 116899999998753            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      +..|++|.|.
T Consensus       105 g~iD~lvnnA  114 (297)
T 1xhl_A          105 GKIDILVNNA  114 (297)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            2578888874

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=81.77  E-value=6.9  Score=30.19  Aligned_cols=71  Identities=15%  Similarity=0.097  Sum_probs=47.5

Q ss_pred             CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------
Q 047897           30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------   93 (232)
                      .+.++|=.|+ +|.++..++    +.+.+|++++. ++...+...+.+...+  .++.++.+|+.+...           
T Consensus        20 ~~k~vlItGa-sggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   96 (274)
T 1ja9_A           20 AGKVALTTGA-GRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   96 (274)
T ss_dssp             TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            3567886665 455555544    47889999998 7766665555554444  468899999987531           


Q ss_pred             -CCcceeeccc
Q 047897           94 -PQFDLVVANI  103 (232)
Q Consensus        94 -~~~D~Vi~n~  103 (232)
                       ...|.||.|.
T Consensus        97 ~~~~d~vi~~A  107 (274)
T 1ja9_A           97 FGGLDFVMSNS  107 (274)
T ss_dssp             HSCEEEEECCC
T ss_pred             cCCCCEEEECC
Confidence             2568888764

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=81.72  E-value=7.5  Score=30.45  Aligned_cols=70  Identities=17%  Similarity=0.226  Sum_probs=47.8

Q ss_pred             CCEEEEEcCCccHhHHHHH----hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           31 DDTVLEIGPGTGNLTLKLL----EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +.++|=.|++ |.++..++    +.+.+|++++.+++-.+.+.+.+...+  .++.++.+|+.+..            ++
T Consensus        44 ~k~vlITGas-ggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           44 NKVALVTGAG-RGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             SCEEEEESTT-SHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCC-cHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            5678877765 45444444    468899999988776666555555433  46889999998752            13


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|.||.|.
T Consensus       121 ~id~li~~A  129 (285)
T 2c07_A          121 NVDILVNNA  129 (285)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            578888774

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=81.37  E-value=4.5  Score=30.93  Aligned_cols=72  Identities=15%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCccHhHHHHH----hcCCeEEEEEcC-HHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------
Q 047897           30 PDDTVLEIGPGTGNLTLKLL----EVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~----~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------   93 (232)
                      .+.++|=.|+ +|.++..++    +.+.+|++++.+ ++-++.+.+.+...+  .++.++.+|+.+...           
T Consensus         6 ~~k~vlVTGa-sggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~   82 (258)
T 3afn_B            6 KGKRVLITGS-SQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADG--GDAAFFAADLATSEACQQLVDEFVAK   82 (258)
T ss_dssp             TTCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence            3567776665 455555544    478999999988 655555544444433  579999999987531           


Q ss_pred             -CCcceeecccC
Q 047897           94 -PQFDLVVANIP  104 (232)
Q Consensus        94 -~~~D~Vi~n~p  104 (232)
                       +..|.||.|.-
T Consensus        83 ~g~id~vi~~Ag   94 (258)
T 3afn_B           83 FGGIDVLINNAG   94 (258)
T ss_dssp             HSSCSEEEECCC
T ss_pred             cCCCCEEEECCC
Confidence             25788887653

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=81.36  E-value=6.9  Score=30.60  Aligned_cols=71  Identities=21%  Similarity=0.292  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----------PQ   95 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----------~~   95 (232)
                      .+.++|=.|++.|   .++..+++.+.+|++++.++...+.+.+ +...+  .++.++.+|+.+...           ..
T Consensus        30 ~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~g~  106 (273)
T 3uf0_A           30 AGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADE-IADGG--GSAEAVVADLADLEGAANVAEELAATRR  106 (273)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHH-HHTTT--CEEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHH-HHhcC--CcEEEEEecCCCHHHHHHHHHHHHhcCC
Confidence            4678888887665   2555566688999999966554444433 33333  578999999987531           25


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|++|.|.
T Consensus       107 iD~lv~nA  114 (273)
T 3uf0_A          107 VDVLVNNA  114 (273)
T ss_dssp             CCEEEECC
T ss_pred             CcEEEECC
Confidence            78888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	232
d1i4wa_	322	c.66.1.24 (A:) Transcription factor sc-mtTFB {Bake	3e-46
d1zq9a1	278	c.66.1.24 (A:36-313) Probable dimethyladenosine tr	1e-44
d1qyra_	252	c.66.1.24 (A:) High level kasugamycin resistance p	8e-35
d1yuba_	245	c.66.1.24 (A:) rRNA adenine dimethylase {Streptoco	5e-29
d1qama_	235	c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus	5e-27
d1l3ia_	186	c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi	3e-12
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	1e-07
d1u2za_	406	c.66.1.31 (A:) Catalytic, N-terminal domain of his	3e-07
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	4e-07
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	5e-07
d1nw3a_	328	c.66.1.31 (A:) Catalytic, N-terminal domain of his	5e-07
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	7e-07
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	9e-07
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	1e-06
d1nkva_	245	c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric	3e-06
d1g8sa_	230	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth	3e-06
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	3e-06
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	6e-06
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	1e-05
d2frna1	260	c.66.1.47 (A:19-278) Hypothetical protein PH0793 {	1e-05
d1i9ga_	264	c.66.1.13 (A:) Probable methyltransferase Rv2118c	1e-05
d1o54a_	266	c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo	5e-05
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	1e-04
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	4e-04
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	5e-04
d1vbfa_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	8e-04
d1xvaa_	292	c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra	0.001
d1jqea_	280	c.66.1.19 (A:) Histamine methyltransferase {Human	0.002
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	0.002
d1i1na_	224	c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransf	0.003
d2ih2a1	223	c.66.1.27 (A:21-243) DNA methylase TaqI, N-termina	0.004

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 322

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  154 bits (389), Expect = 3e-46
 Identities = 42/273 (15%), Positives = 77/273 (28%), Gaps = 64/273 (23%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINP------DDTVLEIGPGTGNLTLKLLEVS--KKV 55
                G   L N  V + I  K  +        +  VL++ PG G  +         ++ 
Sbjct: 11  LKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQY 70

Query: 56  HAIEIDERMVEILNRRAADSGFHDRLNVISKDALK---------------------TEFP 94
             +E    + + LN +         L ++ +D                            
Sbjct: 71  SLLEKRSSLYKFLNAKFEG----SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHIN 126

Query: 95  QFDLVVANIPYGISSPLVAKLVYGTKS--------FRSATLLLQKEFARRLLASPGDSEF 146
              L VAN+    S  L+ + +    +             L +    AR+LLA PG    
Sbjct: 127 DKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVKMLLWMPSTTARKLLARPGMHSR 186

Query: 147 NRLAVNVKLVADVEFV---------------------MDVSKRDFLPCPKVDSSVVIIRP 185
           ++ +V  +   D + +                     +  S  +  P      ++V +  
Sbjct: 187 SKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEM-- 244

Query: 186 KAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ 218
                D ++D W   TR     K   L      
Sbjct: 245 DPIDFDFDVDNWDYVTRHLMILKRTPLNTVMDS 277

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} Length = 278

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  148 bits (375), Expect = 1e-44
 Identities = 105/216 (48%), Positives = 140/216 (64%)

Query: 10  QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
           QHIL N  +++SI+ K+++ P D VLE+GPGTGN+T+KLLE +KKV A E+D R+V  L+
Sbjct: 1   QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60

Query: 70  RRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLL 129
           +R   +    +L V+  D LKT+ P FD  VAN+PY ISSP V KL+     FR A L+ 
Sbjct: 61  KRVQGTPVASKLQVLVGDVLKTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMF 120

Query: 130 QKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKAEI 189
           Q+EFA RL+A PGD  + RL++N +L+A V+ +M V K +F P PKV+SSVV I PK   
Sbjct: 121 QREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 180

Query: 190 PDVNLDEWRAFTRTCFSKKNKTLGATFKQKKKVIEL 225
           P +N  EW    R  F +KNKTL A FK       L
Sbjct: 181 PPINFQEWDGLVRITFVRKNKTLSAAFKSSAVQQLL 216

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (306), Expect = 8e-35
 Identities = 63/231 (27%), Positives = 102/231 (44%), Gaps = 8/231 (3%)

Query: 10  QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
           Q+ L +Q V+DSIV   +      ++EIGPG   LT  + E   ++  IE+D  +   L 
Sbjct: 1   QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQ 60

Query: 70  RRAADSGFHDRLNV----ISKDALKTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSA 125
                              +   L  +  Q   V  N+PY IS+PL+  L   T +    
Sbjct: 61  THPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADM 120

Query: 126 TLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRP 185
             +LQKE   RL+A P    + RL+V  +   +V  V++V    F P PKVDS+VV + P
Sbjct: 121 HFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVP 180

Query: 186 KAEIP--DVNLDEWRAFTRTCFSKKNKTLGATFKQ--KKKVIELLRLSKQK 232
            A +P    ++      T   F+++ KT+  +       +V+  + +    
Sbjct: 181 HATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAM 231

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

 Score =  107 bits (267), Expect = 5e-29
 Identities = 54/226 (23%), Positives = 114/226 (50%), Gaps = 14/226 (6%)

Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
            Q+ LT+++VL+ I+++ ++   DTV EIG G G+LT KL ++SK+V +IE+D  +  + 
Sbjct: 8   SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLS 67

Query: 69  NRRAADSGFHDRLNVISKDALKTEFPQFD--LVVANIPYGISSPLVAKLVYGTKSFRSAT 126
           + +   +     ++   +D L+ +FP      +V NIPY +S+ ++ K+V+ +++     
Sbjct: 68  SEKLKLNTRVTLIH---QDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFESRASDIYL 124

Query: 127 LLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVV-IIRP 185
           ++ +  + R             L + +     ++ ++ +    F P PKV+S ++ + R 
Sbjct: 125 IVEEGFYKR------TLDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRH 178

Query: 186 KAEIPDVNLDEWRAFTRTCFSKKNKTL--GATFKQKKKVIELLRLS 229
             ++PD     +  F     +++ + L     F Q  K  ++  LS
Sbjct: 179 TTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQFHQAMKHAKVNNLS 224

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Length = 235

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

 Score =  101 bits (253), Expect = 5e-27
 Identities = 56/206 (27%), Positives = 104/206 (50%), Gaps = 12/206 (5%)

Query: 10  QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILN 69
           Q+ +T++  +D I+    +N  D + EIG G G+ TL+L++    V AIEID ++ +   
Sbjct: 1   QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60

Query: 70  RRAADSGFHDRLNVISKDALKTEFPQF--DLVVANIPYGISSPLVAKLVYGTKSFRSATL 127
            +  D        V++KD L+ +FP+     +  NIPY IS+ ++ K+V+ +       L
Sbjct: 61  NKLVDHDNF---QVLNKDILQFKFPKNQSYKIFGNIPYNISTDIIRKIVFDSI-ADEIYL 116

Query: 128 LLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA 187
           +++  FA+RL      +    LA+ +    D+  +  V +  F P PKV+SS++ +  K 
Sbjct: 117 IVEYGFAKRL-----LNTKRSLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKK 171

Query: 188 E-IPDVNLDEWRAFTRTCFSKKNKTL 212
             I   +  ++  F     +K+ K +
Sbjct: 172 SRISHKDKQKYNYFVMKWVNKEYKKI 197

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 61.0 bits (147), Expect = 3e-12
 Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 4   FHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDER 63
           F K+      T   V   I+  +    +D  +++G GTG +TL+L    ++V+AI+ +  
Sbjct: 7   FIKNPSVPGPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPE 66

Query: 64  MVEILNRRAADSGFHDRLNVISKDA--LKTEFPQFDLVVANIPYG----ISSPLVAKLVY 117
            +          G  D + ++  DA     + P  D+ V     G    I   +  KL  
Sbjct: 67  AISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQEILRIIKDKLKP 126

Query: 118 GTKSFRSATLLLQKEFARRLLASPG-DSEFNRLAV 151
           G +   +A LL  K  A   L   G D     L +
Sbjct: 127 GGRIIVTAILLETKFEAMECLRDLGFDVNITELNI 161

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 48.5 bits (114), Expect = 1e-07
 Identities = 10/49 (20%), Positives = 28/49 (57%)

Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEI 67
          L  +++ +++  ++ VL++  G G++        KKV A ++ E ++++
Sbjct: 4  LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKV 52

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 14  TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRR 71
                L  + ++  +   DT +++G G GN  ++             EI +   ++   +
Sbjct: 200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQ 259

Query: 72  AADSGFHDRLNVISKDALKTEF 93
             +     +L  +  + ++   
Sbjct: 260 YEELKKRCKLYGMRLNNVEFSL 281

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 4e-07
 Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFH 78
           I+    INP DTVLE G G+G ++L L +      +V + E+ +   ++  +        
Sbjct: 90  ILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS 149

Query: 79  DRLNVISKDALKTEFPQFDL 98
            +L+ + +     +F   D+
Sbjct: 150 WKLSHVEEWPDNVDFIHKDI 169

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 46.9 bits (110), Expect = 5e-07
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
          L  +++ +    +  VL+IG G G+  L      ++   ++  + M
Sbjct: 5  LGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEM 50

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 5e-07
 Identities = 12/101 (11%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 14  TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS--KKVHAIEIDERMVEILNRR 71
           T+  ++  ++ +  +  DD  +++G G G + L++   +  K  + +E  +   +     
Sbjct: 135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETM 194

Query: 72  AADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSPLV 112
             +     +         +    + D +       I++  V
Sbjct: 195 DREFRKWMKWYGKKHA--EYTLERGDFLSEEWRERIANTSV 233

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 12/66 (18%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFH 78
           I+ +  + P   +LE+G G+GN++  +L        +  +E DE  ++      ++    
Sbjct: 77  IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI 136

Query: 79  DRLNVI 84
             +   
Sbjct: 137 GNVRTS 142

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 9e-07
 Identities = 18/83 (21%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 15  NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAA 73
            +   D I +   I  D  VL++G GTG L++   +  +KKV  ++  E + + ++    
Sbjct: 20  TESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRL 79

Query: 74  DSGFHDRLNVISKDALKTEFPQF 96
           +    D + +I     +   P  
Sbjct: 80  N-KLEDTITLIKGKIEEVHLPVE 101

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHD 79
          + + +      D+VL++G G G   LK       + + ++I E  +     RA +     
Sbjct: 15 ACLIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRF 74

Query: 80 RLNVISKDALKTEFP 94
          ++   ++D+      
Sbjct: 75 KVFFRAQDSYGRHMD 89

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 20/105 (19%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 3   FFHKSKGQHILTN---QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAI 58
            F  S+ +H + N   +    ++ R   + P   +L++G G+G +              I
Sbjct: 3   IFTISESEHRIHNPFTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGI 62

Query: 59  EIDERMVEILNRRAADSGFHDRLNVISKDAL-KTEFPQFDLVVAN 102
           ++         RRA + G  +R++ I  DA       + D+    
Sbjct: 63  DMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACV 107

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 44.3 bits (104), Expect = 3e-06
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
           I  D  +L +G   G     + ++     V+AIE   R++  L    A+      +   +
Sbjct: 72  IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDA 131

Query: 86  KDALKTEFPQFD 97
               +       
Sbjct: 132 NKPQEYANIVEK 143

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (105), Expect = 3e-06
 Identities = 16/78 (20%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFH 78
           ++I++   +  D  VL++G GTG L++   +  +K V  +++   ++E+       +GF 
Sbjct: 28  NAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS 86

Query: 79  DRLNVISKDALKTEFPQF 96
           D++ ++         P  
Sbjct: 87  DKITLLRGKLEDVHLPFP 104

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 6e-06
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 20  DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFH 78
           +S+     +  D  VL++G GTG L +   +  ++KV  IE    + +   +    +   
Sbjct: 23  NSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLD 81

Query: 79  DRLNVISKDALKTEFPQFD 97
             + +I     + E P   
Sbjct: 82  HVVTIIKGKVEEVELPVEK 100

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 14/80 (17%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 28  INPDDTVLEIGPGTGNLTLKL--LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS 85
           +  D+ VL +G  +G     L  +     ++A+E   +  E L          + +  + 
Sbjct: 54  LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR---ERNNIIPLL 110

Query: 86  KDALKTEFPQFDLVVANIPY 105
            DA K       +   ++ Y
Sbjct: 111 FDASKPWKYSGIVEKVDLIY 130

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEVSK-KVHAIEIDERMVEILNRRAADSGFHDRLNVISK 86
             PD+ V+++  G G+L+L +    K KV AIE D    + L      +   DR++  + 
Sbjct: 105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM 164

Query: 87  DALKT-EFPQFDLVVANIPYG 106
           D          D ++      
Sbjct: 165 DNRDFPGENIADRILMGYVVR 185

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 7/90 (7%)

Query: 22  IVRKSSINPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEIL--NRRAADSG 76
           IV +  I P   VLE G G+G LTL LL     + +V + E      E    N       
Sbjct: 88  IVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ 147

Query: 77  FHDRLNVISKDALKTEF--PQFDLVVANIP 104
             D   ++  D   +E      D  V ++ 
Sbjct: 148 PPDNWRLVVSDLADSELPDGSVDRAVLDML 177

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 7/125 (5%)

Query: 2   IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAI 58
              +  +   I+  +     I     +   D +++ G G+G +   L      S KV A 
Sbjct: 76  EIMNMKRRTQIVYPKDS-SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAY 134

Query: 59  EIDERMVEILNRRAADSGFHDRLNVISKDA---LKTEFPQFDLVVANIPYGISSPLVAKL 115
           E  E   ++        G  +R+ +  +D       +      +    P+         L
Sbjct: 135 EKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEAL 194

Query: 116 VYGTK 120
             G +
Sbjct: 195 KGGGR 199

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 12/79 (15%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 28  INPDDTVLEIGPGTGNLTLKLLEV---SKKVHAIEIDERMVEILNRRAADSGFHDRLNVI 84
           I P  +VL +G  +G     + ++     K+  IE   R++  L     +      +   
Sbjct: 71  IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGD 130

Query: 85  SKDALKTEFPQFDLVVANI 103
           +    +       + V   
Sbjct: 131 ATKPEEYRALVPKVDVIFE 149

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 15/62 (24%)

Query: 19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
          L       ++ P   VL    G       L      V   E+ E  VE       +    
Sbjct: 9  LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHI 68

Query: 79 DR 80
            
Sbjct: 69 TS 70

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 5e-04
 Identities = 11/69 (15%), Positives = 22/69 (31%), Gaps = 1/69 (1%)

Query: 25  KSSINPDDTVLEIGPGTGNLTLKL-LEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNV 83
                  DT+++IG G     +    +  + +   +  +R  E L +             
Sbjct: 46  GPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTP 105

Query: 84  ISKDALKTE 92
             K A + E
Sbjct: 106 AVKFACELE 114

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

 Score = 37.1 bits (85), Expect = 8e-04
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 9   GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEIL 68
           G +  T   +   ++ +  ++    VLEIG G G  T  + E+  KV ++EI+E+M    
Sbjct: 50  GINT-TALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYA 108

Query: 69  NRRAADSGFHD 79
           ++  +      
Sbjct: 109 SKLLSYYNNIK 119

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 10/94 (10%), Positives = 32/94 (34%)

Query: 16  QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS 75
                 ++     +    VL++  GTG  ++ L+E    V +++  ++M++   +   + 
Sbjct: 42  AEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNR 101

Query: 76  GFHDRLNVISKDALKTEFPQFDLVVANIPYGISS 109
                 +    +         D+   +    +  
Sbjct: 102 RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 15/106 (14%), Positives = 33/106 (31%), Gaps = 18/106 (16%)

Query: 15  NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKK--------VHAIEIDERMVE 66
           ++++   I R      +  +L IG G G + L++L   +            +E     + 
Sbjct: 25  DKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIA 84

Query: 67  ILNRRAADSGFHDRLN----------VISKDALKTEFPQFDLVVAN 102
                 A     + +             S+   K E  ++D +   
Sbjct: 85  KYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMI 130

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERM 64
          +       +LE+G   G+ T +L E    +  +E  E  
Sbjct: 16 TPFFRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEA 54

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.003
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 3/54 (5%)

Query: 28  INPDDTVLEIGPGTGNLTL---KLLEVSKKVHAIEIDERMVEILNRRAADSGFH 78
           ++     L++G G+G LT    +++  + KV  I+  + +V+            
Sbjct: 74  LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPT 127

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 223

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 3/88 (3%)

Query: 12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEIL 68
          + T   V+D +V  +       VLE     G       E    + +   +EID + +++ 
Sbjct: 1  VETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP 60

Query: 69 NRRAADSGFHDRLNVISKDALKTEFPQF 96
                              L    P +
Sbjct: 61 PWAEGILADFLLWEPGEAFDLILGNPPY 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	232
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	100.0
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	100.0
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	100.0
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	100.0
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	100.0
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.76
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.75
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.74
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.69
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.69
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.66
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.66
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.62
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.6
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.6
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.6
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.57
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.57
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.56
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.56
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.55
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.54
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.54
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.53
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.52
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.52
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.52
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.51
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.51
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.49
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.49
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.49
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.47
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.47
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.47
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.46
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.46
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.45
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.44
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.44
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	99.43
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	99.42
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.42
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.41
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.41
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.39
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.39
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.37
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.36
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.35
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.35
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.35
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.35
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.33
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.31
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.3
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.29
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.29
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.27
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.27
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.27
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.26
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.25
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.25
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.23
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	99.21
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.21
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.2
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.2
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	99.19
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	99.17
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.15
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.08
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.02
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.01
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.98
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.92
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	98.87
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.86
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.81
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.64
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.56
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	98.55
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.53
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.46
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	98.43
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	98.4
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.35
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	98.33
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.32
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.26
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.26
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.19
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.18
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.13
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.06
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.03
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.94
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	97.91
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.87
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.85
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.84
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.81
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	97.75
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	97.59
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	97.43
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	97.34
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	97.21
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.09
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	96.97
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.56
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.39
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.29
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	96.0
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	95.66
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.64
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	95.6
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.23
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	95.02
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	94.94
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.86
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.81
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.72
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	94.68
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	94.52
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.47
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	94.38
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.31
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.16
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.12
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	94.09
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	94.07
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	93.97
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.87
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	93.75
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	93.72
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	93.71
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	93.69
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	93.61
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.41
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	93.28
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	93.21
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.86
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.75
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.63
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	92.6
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.44
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	92.4
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	92.04
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	91.97
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	91.92
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	91.81
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	91.73
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.59
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	91.52
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	91.21
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	91.15
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	91.14
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.09
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.05
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	90.86
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	90.82
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.64
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.58
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.52
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	90.46
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	90.23
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	89.7
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.67
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.66
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	89.62
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	89.46
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	89.39
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	88.92
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	88.34
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.22
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	87.87
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	87.7
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	87.61
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	87.6
d2oo3a1	271	Uncharacterized protein LPG1296 {Legionella pneumo	87.4
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	86.15
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	85.47
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	85.34
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	85.25
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	85.18
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.95
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.74
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	83.13
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	82.95
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	82.77
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	82.14
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	80.18

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.1e-49  Score=315.17  Aligned_cols=209  Identities=50%  Similarity=0.808  Sum_probs=199.1

Q ss_pred             ccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        10 q~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ||||+|++++++|++.+++.+++.|||||||+|.+|..+++.+.+|+++|+|+.+++.+++.+......++++++++|++
T Consensus         1 QnFL~d~~i~~kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l   80 (278)
T d1zq9a1           1 QHILKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVL   80 (278)
T ss_dssp             CCEECCHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTT
T ss_pred             CCCcCCHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHh
Confidence            89999999999999999999999999999999999999999889999999999999999999977655578999999999


Q ss_pred             CCCCCCcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEEEEecCCC
Q 047897           90 KTEFPQFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSKRD  169 (232)
Q Consensus        90 ~~~~~~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (232)
                      +.+.+.++.||+|+||+++++++.+++.....+..+++|+|+|+|+|++++||++.|+.++++++.+++++.++++|++.
T Consensus        81 ~~~~~~~~~vV~NLPY~Iss~il~~~~~~~~~~~~~v~m~QkEvA~Rl~A~p~~k~yg~LSv~~q~~~~v~~~~~Vp~~~  160 (278)
T d1zq9a1          81 KTDLPFFDTCVANLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLYCRLSINTQLLARVDHLMKVGKNN  160 (278)
T ss_dssp             TSCCCCCSEEEEECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTCSHHHHHHHHHEEEEEEEEECGGG
T ss_pred             hhhhhhhhhhhcchHHHHHHHHHHHHHhhCCccceeeEeecHHHHHHHhhhhccchhhhhhhheeecceeeEEeecccce
Confidence            99888888999999999999999999988888899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCccEEEEEEEeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          170 FLPCPKVDSSVVIIRPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       170 f~P~p~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      |+|+|+|+|+++.++|++.....+.+.|..+++.+|++|||+++|+|+.
T Consensus       161 F~P~PkVdSavv~l~pk~~~~~~~~~~~~~~vr~~F~~RRK~l~n~Lk~  209 (278)
T d1zq9a1         161 FRPPPKVESSVVRIEPKNPPPPINFQEWDGLVRITFVRKNKTLSAAFKS  209 (278)
T ss_dssp             EESCCSSCEEEEEEEECSSCCSCCHHHHHHHHHHHHTTTTSBHHHHTTS
T ss_pred             eeeccccceEEEEeeccCCCchhhHHHHHHHHHHHhCccHHhHHHHHhh
Confidence            9999999999999999887667788999999999999999999999986

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-46  Score=298.80  Aligned_cols=206  Identities=31%  Similarity=0.474  Sum_probs=190.4

Q ss_pred             ccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        10 q~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ||||+|+.++++|++.+++.+++.|||||||+|.+|..+++.+.+|+++|+|+.+++.+++.....   ++++++++|++
T Consensus         1 QnFL~d~~~~~~Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~~~~ii~~D~l   77 (252)
T d1qyra_           1 QNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAM   77 (252)
T ss_dssp             CCEECCHHHHHHHHHHHCCCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGG
T ss_pred             CCccCCHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhc---cchhHHhhhhh
Confidence            899999999999999999999999999999999999999999999999999999999998865432   68999999999


Q ss_pred             CCCCCC-------cceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEE
Q 047897           90 KTEFPQ-------FDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFV  162 (232)
Q Consensus        90 ~~~~~~-------~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~  162 (232)
                      +++.+.       .-.|++|+||+++++++.+++.....+..+++|+|+|+|+|++++||++.|+.+++..+.+++++.+
T Consensus        78 ~~~~~~~~~~~~~~~~vvgNlPY~Iss~Il~~l~~~~~~~~~~~~m~QkEvA~Ri~A~~gsk~yg~Lsv~~q~~~~~~~~  157 (252)
T d1qyra_          78 TFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPV  157 (252)
T ss_dssp             GCCHHHHHHHHTSCEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEEEHHHHHHHHCCTTSTTCSHHHHHHHHHEEEEEE
T ss_pred             hhcccccccccCCCeEEEecchHHHHHHHHHHhcccccceehhhhhhhHHHHHHhccCCCChhhhHHHhhhhhccccccc
Confidence            987642       2379999999999999999998888888999999999999999999999999999999999999999


Q ss_pred             EEecCCCcccCCCccEEEEEEEeCCCC--CCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          163 MDVSKRDFLPCPKVDSSVVIIRPKAEI--PDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       163 ~~~~~~~f~P~p~v~s~~~~~~~~~~~--~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      +.++++.|+|+|+|+|+++.+.+++..  ...+.+.|..+++.+|++|||++++.++.
T Consensus       158 ~~V~~~~F~P~PkVdS~vv~l~~~~~~~~~~~~~~~~~~~~~~~F~~rRK~l~~~L~~  215 (252)
T d1qyra_         158 LEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGN  215 (252)
T ss_dssp             EEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHHHTTT
T ss_pred             cccChhhhccccccceeEEEEecccccchhhhHHHHHHHHHHHHHccchHHHHHHHhh
Confidence            999999999999999999999998753  34567889999999999999999999875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=100.00  E-value=5.7e-43  Score=275.84  Aligned_cols=194  Identities=30%  Similarity=0.511  Sum_probs=175.8

Q ss_pred             ccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           10 QHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        10 q~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ||||.|++++++|++.+++.++++|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...   ++++++++|++
T Consensus         1 QnFL~d~~i~~~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l   77 (235)
T d1qama_           1 QNFITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDIL   77 (235)
T ss_dssp             CCBCCCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGG
T ss_pred             CCCcCCHHHHHHHHHhcCCCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhh
Confidence            899999999999999999999999999999999999999999999999999999999999988653   68999999999


Q ss_pred             CCCCC--CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEEEEecC
Q 047897           90 KTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFVMDVSK  167 (232)
Q Consensus        90 ~~~~~--~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  167 (232)
                      +++.+  ....|++|+||+++++++.+++... ....+++|+|+|+|+|+++.||+     +++.++.+++++.++++++
T Consensus        78 ~~~~~~~~~~~vv~NLPYnIss~il~~ll~~~-~~~~~vlm~QkEvA~Ri~a~~~~-----lsv~~~~~~~~~~~~~V~~  151 (235)
T d1qama_          78 QFKFPKNQSYKIFGNIPYNISTDIIRKIVFDS-IADEIYLIVEYGFAKRLLNTKRS-----LALFLMAEVDISILSMVPR  151 (235)
T ss_dssp             GCCCCSSCCCEEEEECCGGGHHHHHHHHHHSC-CCSEEEEEEEHHHHHHHTCTTSH-----HHHHHTTTEEEEEEEEECG
T ss_pred             hccccccccceeeeeehhhhhHHHHHHHHhhh-hhhhhhhhhhHHHHHhhhccccc-----ceEEEeeccccccccccCh
Confidence            98876  3357999999999999999988653 56789999999999999987764     7888999999999999999


Q ss_pred             CCcccCCCccEEEEEEEeCCCCC-CCCHHHHHHHHHHhhcCCCchH
Q 047897          168 RDFLPCPKVDSSVVIIRPKAEIP-DVNLDEWRAFTRTCFSKKNKTL  212 (232)
Q Consensus       168 ~~f~P~p~v~s~~~~~~~~~~~~-~~~~~~~~~~~~~~f~~rrk~l  212 (232)
                      ++|+|+|+|+|+++.+.+++... ..+.+.|..+++.+|.+|||++
T Consensus       152 ~~F~P~PKVdS~vv~l~~k~~~~~~~~~~~~~~~v~~~F~~rRK~i  197 (235)
T d1qama_         152 EYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKI  197 (235)
T ss_dssp             GGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGT
T ss_pred             hhccccccceEEEEEEEecCCCCCccCHHHHHHHHHHHHccccccc
Confidence            99999999999999999987543 3457789999999999999987

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=100.00  E-value=7.5e-45  Score=287.89  Aligned_cols=203  Identities=26%  Similarity=0.438  Sum_probs=181.3

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      |+.+|++|||||.|+.++++|++.+++.+++.|||||||+|.+|..+++.+.+|+|+|+|+.+++.+++++...   +++
T Consensus         1 ~~~~~k~GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~---~n~   77 (245)
T d1yuba_           1 MNKNIKYSQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLN---TRV   77 (245)
T ss_dssp             CCCCCCSCCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTC---SEE
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhc---cch
Confidence            56799999999999999999999999999999999999999999999999999999999999999988877543   689


Q ss_pred             EEEEcCCCCCCCC--CcceeecccCcccchHHHHHHhcCCCCccceEehhHHHHHHHHhcCCCCCcccchhheeeeeeee
Q 047897           82 NVISKDALKTEFP--QFDLVVANIPYGISSPLVAKLVYGTKSFRSATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADV  159 (232)
Q Consensus        82 ~~~~~D~~~~~~~--~~D~Vi~n~p~~~~~~~l~~~~~~~~~~~~~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~  159 (232)
                      +++++|+++++.+  .++.|++|+||+++++++.+++.. .....+++|+|+|+|+|+++.     |+++++.+++++++
T Consensus        78 ~ii~~D~l~~~~~~~~~~~vv~NLPY~Ist~il~~~l~~-~~~~~~v~m~QkEva~r~~~~-----~~~lsv~~q~~~~~  151 (245)
T d1yuba_          78 TLIHQDILQFQFPNKQRYKIVGNIPYHLSTQIIKKVVFE-SRASDIYLIVEEGFYKRTLDI-----HRTLGLLLHTQVSI  151 (245)
T ss_dssp             EECCSCCTTTTCCCSSEEEEEEECCSSSCHHHHHHHHHH-CCCEEEEEEEESSHHHHHHCG-----GGSHHHHTTTTBCC
T ss_pred             hhhhhhhhccccccceeeeEeeeeehhhhHHHHHHHhhh-chhhhhhhhhhhhHHhhhhhh-----hhhhhhhhhhccee
Confidence            9999999998876  556899999999999999998865 456788999999999998754     67799999999999


Q ss_pred             EEEEEecCCCcccCCCccEEEEEEEeCCCCCC-CCHHHHHHHHHHhhcCCCchHH
Q 047897          160 EFVMDVSKRDFLPCPKVDSSVVIIRPKAEIPD-VNLDEWRAFTRTCFSKKNKTLG  213 (232)
Q Consensus       160 ~~~~~~~~~~f~P~p~v~s~~~~~~~~~~~~~-~~~~~~~~~~~~~f~~rrk~l~  213 (232)
                      +.++++++++|.|+|+|+|+++.+.++..... .....|..+++.+|.+|||++.
T Consensus       152 ~~~~~v~~~~F~P~PkV~S~vi~l~~k~~~~~~~~~~~~~~~~~k~f~~~rK~l~  206 (245)
T d1yuba_         152 QQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLF  206 (245)
T ss_dssp             CEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHC
T ss_pred             eeecccCcceEECCCcceEEEEEEEcCCCCCchhHHHHHHHHHHHHHhhHHHHhc
Confidence            99999999999999999999999998775432 2345688899999999999984

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2e-39  Score=267.13  Aligned_cols=211  Identities=20%  Similarity=0.248  Sum_probs=183.4

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhcCCC------CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHh
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKSSIN------PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAA   73 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~~~~------~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~   73 (232)
                      .+.+|.+||||++|+++++.|++.+++.      +++.|||||+|.|.+|..+++.  ..+|+++|+|+.+++.+++.+.
T Consensus         9 ~k~kk~~GQnfL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~   88 (322)
T d1i4wa_           9 SKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE   88 (322)
T ss_dssp             CSSCCGGGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT
T ss_pred             hhhhhhccccccCCHHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc
Confidence            4678999999999999999999988754      4678999999999999999974  4689999999999999998875


Q ss_pred             hcCCCccEEEEEcCCCCCCC---------------CCc------ceeecccCcccchHHHHHHhc--------CCCCccc
Q 047897           74 DSGFHDRLNVISKDALKTEF---------------PQF------DLVVANIPYGISSPLVAKLVY--------GTKSFRS  124 (232)
Q Consensus        74 ~~~~~~~~~~~~~D~~~~~~---------------~~~------D~Vi~n~p~~~~~~~l~~~~~--------~~~~~~~  124 (232)
                      .    ++++++++|++.+..               ...      =.|++|+||+++++++.+++.        .......
T Consensus        89 ~----~~~~ii~~D~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvaNLPy~iss~il~~~l~~~~~~~~l~~~g~~~  164 (322)
T d1i4wa_          89 G----SPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVANVTGEGSEGLIMQWLSCIGNKNWLYRFGKVK  164 (322)
T ss_dssp             T----SSCEEECSCTTCHHHHHHHTTTTCSSCCCCCCTTSEEEEEEEEEECCSTTHHHHHHHHHHHHHHTCGGGGGSEEE
T ss_pred             C----CCcEEEeCchhhcchhhhhhhcccccccccccccccCCceEEEEeCCchhhHHHHHHHHHhccccccccccccce
Confidence            3    579999999986421               000      158999999999999988775        2334567


Q ss_pred             eEehhHHHHHHHHhcCCCCCcccchhheeeeeeeeEEE---------------------EEecCCCcccCCCccEEEEEE
Q 047897          125 ATLLLQKEFARRLLASPGDSEFNRLAVNVKLVADVEFV---------------------MDVSKRDFLPCPKVDSSVVII  183 (232)
Q Consensus       125 ~~~~~q~e~~~rl~~~~g~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~f~P~p~v~s~~~~~  183 (232)
                      +++|+|+|+|+|++++||++.|+++|+.+|.+++++.+                     ..++++.|.|.|+|+|+++.+
T Consensus       165 ~vlm~QkEvA~Rl~A~pg~k~y~~lSV~~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~F~P~PkVds~vv~l  244 (322)
T d1i4wa_         165 MLLWMPSTTARKLLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEM  244 (322)
T ss_dssp             EEEEEEHHHHHHHHCCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEEE
T ss_pred             EEEEEeHHHHHHHhcCCCCccccHHHHHHHHHhceeeecccccccccccccccccccCccccChhccCCCCCCCEEEEEE
Confidence            89999999999999999999999999999999999987                     578999999999999999999


Q ss_pred             EeCCCCCCCCHHHHHHHHHHhhcCCCchHHhhcCC
Q 047897          184 RPKAEIPDVNLDEWRAFTRTCFSKKNKTLGATFKQ  218 (232)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~~  218 (232)
                      .|+..  ..+.+.|..+++.+|.+|||+++++|+.
T Consensus       245 ~P~~~--~~~~~~~~~~vr~~F~~RRK~l~~~L~~  277 (322)
T d1i4wa_         245 DPIDF--DFDVDNWDYVTRHLMILKRTPLNTVMDS  277 (322)
T ss_dssp             EECCC--CSCHHHHHHHHHHHHTTTTSCTTTGGGG
T ss_pred             ecCCC--ccCHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            99864  4678899999999999999999998864

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.76  E-value=1.3e-17  Score=126.33  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=75.6

Q ss_pred             ccccCCCcccccCCHHHHHHHHHhc---CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897            2 IFFHKSKGQHILTNQRVLDSIVRKS---SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGF   77 (232)
Q Consensus         2 ~~~~k~~gq~fl~~~~~~~~i~~~~---~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~   77 (232)
                      .+++..+.| |.+++.++..++..+   +.-.|++|||+|||+|.++..++..+ .+|+|+|+|+.+++.|++|.     
T Consensus        18 ~~~~~~leQ-y~T~~~~a~~~~~~~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----   91 (197)
T d1ne2a_          18 GNFKNYLEQ-YPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----   91 (197)
T ss_dssp             C---------CCCCHHHHHHHHHHHHHHTSSBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----
T ss_pred             CCCCccccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----
Confidence            456777777 889999998886544   33368899999999999998888854 68999999999999999987     


Q ss_pred             CccEEEEEcCCCCCCCCCcceeecccCcccc
Q 047897           78 HDRLNVISKDALKTEFPQFDLVVANIPYGIS  108 (232)
Q Consensus        78 ~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~  108 (232)
                       .+++++++|+.+++ ++||+|++||||+..
T Consensus        92 -~~~~~~~~D~~~l~-~~fD~Vi~NPPfg~~  120 (197)
T d1ne2a_          92 -GGVNFMVADVSEIS-GKYDTWIMNPPFGSV  120 (197)
T ss_dssp             -TTSEEEECCGGGCC-CCEEEEEECCCC---
T ss_pred             -ccccEEEEehhhcC-CcceEEEeCcccchh
Confidence             46889999998875 579999999999643

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.75  E-value=1e-17  Score=128.07  Aligned_cols=104  Identities=21%  Similarity=0.287  Sum_probs=88.0

Q ss_pred             CccccCCCcccccCCHHHHHHHHHhc---CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcC
Q 047897            1 YIFFHKSKGQHILTNQRVLDSIVRKS---SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSG   76 (232)
Q Consensus         1 ~~~~~k~~gq~fl~~~~~~~~i~~~~---~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~   76 (232)
                      |.++++.++| |.|++.++..++..+   +.-.|.+|||+|||+|.++..++..+ .+|+|+|+|+.+++.+++|+...+
T Consensus        15 f~~~~~~l~q-y~Tp~~~a~~~~~~~~~~~dl~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~   93 (201)
T d1wy7a1          15 FKNPKVWLEQ-YRTPGNAASELLWLAYSLGDIEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFK   93 (201)
T ss_dssp             CSSCCGGGTC-CCCCHHHHHHHHHHHHHTTSSTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGT
T ss_pred             CCCCCccccc-CCCCHHHHHHHHHHHHhcCCCCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcC
Confidence            4567888999 889899988876533   33467899999999999999888865 589999999999999999998887


Q ss_pred             CCccEEEEEcCCCCCCCCCcceeecccCcccc
Q 047897           77 FHDRLNVISKDALKTEFPQFDLVVANIPYGIS  108 (232)
Q Consensus        77 ~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~  108 (232)
                      .  +.+++.+|+.+++ .+||+|++|+||+..
T Consensus        94 ~--~~~~~~~d~~~~~-~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1          94 G--KFKVFIGDVSEFN-SRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             T--SEEEEESCGGGCC-CCCSEEEECCCCSSS
T ss_pred             C--CceEEECchhhhC-CcCcEEEEcCccccc
Confidence            4  5899999998874 479999999999754

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.74  E-value=7.3e-18  Score=127.47  Aligned_cols=105  Identities=21%  Similarity=0.283  Sum_probs=92.8

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      .+.+++...++..+++.++++|||+|||+|.++..++..+.+|+|+|+|+++++.|++|++..|+.++++++++|+.+..
T Consensus        16 ~t~~eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~   95 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL   95 (186)
T ss_dssp             CCCHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH
T ss_pred             CChHHHHHHHHHhcCCCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc
Confidence            47788999999999999999999999999999999999888999999999999999999999999779999999998764


Q ss_pred             --CCCcceeecccCcccchHHHHHHhc
Q 047897           93 --FPQFDLVVANIPYGISSPLVAKLVY  117 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~~~~l~~~~~  117 (232)
                        .+.||.|+++.+.+...+++..+..
T Consensus        96 ~~~~~~D~v~~~~~~~~~~~~~~~~~~  122 (186)
T d1l3ia_          96 CKIPDIDIAVVGGSGGELQEILRIIKD  122 (186)
T ss_dssp             TTSCCEEEEEESCCTTCHHHHHHHHHH
T ss_pred             cccCCcCEEEEeCccccchHHHHHHHH
Confidence              3489999999887766666655444

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.69  E-value=9.1e-17  Score=125.53  Aligned_cols=90  Identities=20%  Similarity=0.411  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ++..+.+++.+++++|++|||||||+|.++..+++.+.+|+|+|+|+.|++.|++++...+. +++.++++|+.+++++ 
T Consensus         2 ~~~~~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~~~~~   80 (234)
T d1xxla_           2 HHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPD   80 (234)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBCCSCT
T ss_pred             chHHHHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccccccc
Confidence            45677889999999999999999999999999999889999999999999999999988887 5899999999998764 


Q ss_pred             -CcceeecccCcc
Q 047897           95 -QFDLVVANIPYG  106 (232)
Q Consensus        95 -~~D~Vi~n~p~~  106 (232)
                       +||+|++...++
T Consensus        81 ~~fD~v~~~~~l~   93 (234)
T d1xxla_          81 DSFDIITCRYAAH   93 (234)
T ss_dssp             TCEEEEEEESCGG
T ss_pred             cccceeeeeceee
Confidence             799999876544

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.69  E-value=2.2e-16  Score=119.98  Aligned_cols=98  Identities=15%  Similarity=0.341  Sum_probs=84.1

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCCC-CC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTEF-PQ   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~~-~~   95 (232)
                      ..+.+++.+.+.++++|||+|||+|.++..+++.+.+|+++|+|+.+++.+++++..+++. .+++++++|..+... .+
T Consensus        40 ~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~  119 (194)
T d1dusa_          40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK  119 (194)
T ss_dssp             HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred             HHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence            4566788888889999999999999999999998899999999999999999999888774 469999999987433 38


Q ss_pred             cceeecccCcccchHHHHHH
Q 047897           96 FDLVVANIPYGISSPLVAKL  115 (232)
Q Consensus        96 ~D~Vi~n~p~~~~~~~l~~~  115 (232)
                      ||+|++|+||+...+.+..+
T Consensus       120 fD~Ii~~~p~~~~~~~~~~~  139 (194)
T d1dusa_         120 YNKIITNPPIRAGKEVLHRI  139 (194)
T ss_dssp             EEEEEECCCSTTCHHHHHHH
T ss_pred             ceEEEEcccEEecchhhhhH
Confidence            99999999998876655443

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.66  E-value=2.8e-16  Score=122.14  Aligned_cols=86  Identities=20%  Similarity=0.422  Sum_probs=77.0

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Cc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~   96 (232)
                      ++++++.++++++++|||||||+|.++..+++.+.+|+|+|+|+.+++.|++++...+. ++++++++|+.+++++  +|
T Consensus         4 ~~~ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~~~~~~f   82 (231)
T d1vl5a_           4 LAKLMQIAALKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMPFTDERF   82 (231)
T ss_dssp             HHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHHhcCCCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccccc-cccccccccccccccccccc
Confidence            46788899999999999999999999999999889999999999999999999988887 5899999999998764  89


Q ss_pred             ceeecccCc
Q 047897           97 DLVVANIPY  105 (232)
Q Consensus        97 D~Vi~n~p~  105 (232)
                      |+|++.-.+
T Consensus        83 D~v~~~~~l   91 (231)
T d1vl5a_          83 HIVTCRIAA   91 (231)
T ss_dssp             EEEEEESCG
T ss_pred             ccccccccc
Confidence            999986543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=4.3e-16  Score=122.46  Aligned_cols=91  Identities=18%  Similarity=0.290  Sum_probs=81.4

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ..+..++.+.+.+.+.++++|||||||+|.++..+++ .+.+|+|+|+|+.+++.|+++....|+.++++++++|+.++.
T Consensus        17 ~~~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~   96 (245)
T d1nkva_          17 FTEEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV   96 (245)
T ss_dssp             CCHHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC
T ss_pred             CCHHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc
Confidence            4578888999999999999999999999999999988 578999999999999999999999998788999999999874


Q ss_pred             C-CCcceeecccC
Q 047897           93 F-PQFDLVVANIP  104 (232)
Q Consensus        93 ~-~~~D~Vi~n~p  104 (232)
                      . .+||+|++.-.
T Consensus        97 ~~~~fD~v~~~~~  109 (245)
T d1nkva_          97 ANEKCDVAACVGA  109 (245)
T ss_dssp             CSSCEEEEEEESC
T ss_pred             ccCceeEEEEEeh
Confidence            3 48999998543

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.62  E-value=1.5e-15  Score=119.84  Aligned_cols=115  Identities=24%  Similarity=0.278  Sum_probs=92.8

Q ss_pred             cccCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhc--CC
Q 047897            3 FFHKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADS--GF   77 (232)
Q Consensus         3 ~~~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~--~~   77 (232)
                      +..|+-.|-.+  |..+..|+..+++++|++|||+|||+|.+|..|++   ...+|+++|+++++++.|+++++..  +.
T Consensus        71 ~~~~r~tqiiy--pkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~  148 (264)
T d1i9ga_          71 MSMPRGPQVIY--PKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP  148 (264)
T ss_dssp             TTSCSCSCCCC--HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSC
T ss_pred             hhccCCccccc--hHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCC
Confidence            34455555444  88899999999999999999999999999999998   4579999999999999999999864  33


Q ss_pred             CccEEEEEcCCCCCCC--CCcceeecccCcccch-HHHHHHhcCC
Q 047897           78 HDRLNVISKDALKTEF--PQFDLVVANIPYGISS-PLVAKLVYGT  119 (232)
Q Consensus        78 ~~~~~~~~~D~~~~~~--~~~D~Vi~n~p~~~~~-~~l~~~~~~~  119 (232)
                      .+++.++++|+.+.++  .+||.|+.++|-.+.. +.+.+.+...
T Consensus       149 ~~nv~~~~~d~~~~~~~~~~fDaV~ldlp~P~~~l~~~~~~LkpG  193 (264)
T d1i9ga_         149 PDNWRLVVSDLADSELPDGSVDRAVLDMLAPWEVLDAVSRLLVAG  193 (264)
T ss_dssp             CTTEEEECSCGGGCCCCTTCEEEEEEESSCGGGGHHHHHHHEEEE
T ss_pred             CceEEEEecccccccccCCCcceEEEecCCHHHHHHHHHhccCCC
Confidence            4689999999987654  4899999999877653 3344555443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.60  E-value=1.1e-15  Score=120.00  Aligned_cols=102  Identities=20%  Similarity=0.227  Sum_probs=74.4

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      .++-.|-.+  |+-+..|+..+++++|++|||+|||+|.+|..+++   ...+|+++|+++++++.|+++++..+...++
T Consensus        62 ~~r~~qiiy--pkD~~~Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv  139 (250)
T d1yb2a1          62 IRRNTQIIS--EIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNV  139 (250)
T ss_dssp             C--------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTE
T ss_pred             CCCCCcccC--HHHHHHHHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCce
Confidence            344445433  56777889999999999999999999999999997   4579999999999999999999887655799


Q ss_pred             EEEEcCCCCCCC-CCcceeecccCcccc
Q 047897           82 NVISKDALKTEF-PQFDLVVANIPYGIS  108 (232)
Q Consensus        82 ~~~~~D~~~~~~-~~~D~Vi~n~p~~~~  108 (232)
                      ++.++|+.+... ..||.|+.|+|-.+.
T Consensus       140 ~~~~~Di~~~~~~~~fD~V~ld~p~p~~  167 (250)
T d1yb2a1         140 RTSRSDIADFISDQMYDAVIADIPDPWN  167 (250)
T ss_dssp             EEECSCTTTCCCSCCEEEEEECCSCGGG
T ss_pred             EEEEeeeecccccceeeeeeecCCchHH
Confidence            999999988643 489999999986654

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.60  E-value=1.5e-15  Score=121.75  Aligned_cols=87  Identities=13%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--   94 (232)
                      +++.+....++.++.+|||||||+|.++..+++ .+.+|+|+|+++.+++.|+++....|+.++++++++|+.+++++  
T Consensus        55 ~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~  134 (282)
T d2o57a1          55 LASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDN  134 (282)
T ss_dssp             HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccccc
Confidence            445555566788999999999999999999988 57899999999999999999999999878999999999998865  


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      +||+|++.-.
T Consensus       135 sfD~V~~~~~  144 (282)
T d2o57a1         135 SYDFIWSQDA  144 (282)
T ss_dssp             CEEEEEEESC
T ss_pred             ccchhhccch
Confidence            7999998643

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=5e-15  Score=113.90  Aligned_cols=92  Identities=17%  Similarity=0.278  Sum_probs=80.9

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      +...|.+...+++.++++++++|||||||+|.++..+++   ...+|+++|+++++++.|++++...+. .++.++++|+
T Consensus        57 ~i~~P~~~a~~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~  135 (213)
T d1dl5a1          57 TSSQPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDG  135 (213)
T ss_dssp             EECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCG
T ss_pred             eeccchhhHHHHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCch
Confidence            345699999999999999999999999999999999987   356899999999999999999998887 5899999999


Q ss_pred             CCCCC--CCcceeecccC
Q 047897           89 LKTEF--PQFDLVVANIP  104 (232)
Q Consensus        89 ~~~~~--~~~D~Vi~n~p  104 (232)
                      .+...  .+||+|+++..
T Consensus       136 ~~~~~~~~~fD~I~~~~~  153 (213)
T d1dl5a1         136 YYGVPEFSPYDVIFVTVG  153 (213)
T ss_dssp             GGCCGGGCCEEEEEECSB
T ss_pred             HHccccccchhhhhhhcc
Confidence            87644  37999998643

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=5.5e-15  Score=117.31  Aligned_cols=91  Identities=20%  Similarity=0.363  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-C
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-P   94 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-~   94 (232)
                      +++..+.... ..+.+|||+|||+|.++..++.  +..+|+|+|+|+.+++.|++|+..+++ .+++++++|..+... .
T Consensus        97 lv~~~l~~~~-~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~~~~~~  174 (274)
T d2b3ta1          97 LVEQALARLP-EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFSALAGQ  174 (274)
T ss_dssp             HHHHHHHHSC-SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTGGGTTC
T ss_pred             hhhhHhhhhc-ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeecccccccCCC
Confidence            4444444443 3456899999999999999987  568999999999999999999999998 579999999987533 4


Q ss_pred             CcceeecccCcccchH
Q 047897           95 QFDLVVANIPYGISSP  110 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~~~  110 (232)
                      .||+|++||||-...+
T Consensus       175 ~fDlIvsNPPYi~~~~  190 (274)
T d2b3ta1         175 QFAMIVSNPPYIDEQD  190 (274)
T ss_dssp             CEEEEEECCCCBCTTC
T ss_pred             ceeEEEecchhhhhhh
Confidence            8999999999987654

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.57  E-value=3.8e-15  Score=108.63  Aligned_cols=89  Identities=18%  Similarity=0.292  Sum_probs=74.5

Q ss_pred             HHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---CCC
Q 047897           20 DSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---EFP   94 (232)
Q Consensus        20 ~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---~~~   94 (232)
                      +.+...+.. -+|.+|||+|||+|.++.+++.++ .+|+++|.|+.+++.+++++...+..++++++++|+.+.   ...
T Consensus         3 e~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~   82 (152)
T d2esra1           3 GAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG   82 (152)
T ss_dssp             HHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred             HHHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccccc
Confidence            344555443 268899999999999999888764 699999999999999999999998878899999998764   234


Q ss_pred             CcceeecccCcccc
Q 047897           95 QFDLVVANIPYGIS  108 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~  108 (232)
                      +||+|+.||||...
T Consensus        83 ~fDiIf~DPPy~~~   96 (152)
T d2esra1          83 RFDLVFLDPPYAKE   96 (152)
T ss_dssp             CEEEEEECCSSHHH
T ss_pred             ccceeEechhhccc
Confidence            89999999999744

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.56  E-value=1.3e-14  Score=112.00  Aligned_cols=91  Identities=24%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCC
Q 047897            9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDA   88 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~   88 (232)
                      |++ ...|.+...|++.++++++++|||||||+|++|..+++.+.+|+++|+++++++.|++++...   .|+.++++|.
T Consensus        50 g~~-~~~p~~~a~ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~  125 (224)
T d1vbfa_          50 GIN-TTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDG  125 (224)
T ss_dssp             TEE-ECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCG
T ss_pred             CCc-eehhhhHHHHHHHhhhcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcc---cccccccCch
Confidence            554 446899999999999999999999999999999999998899999999999999999988753   5899999998


Q ss_pred             CCCCC--CCcceeeccc
Q 047897           89 LKTEF--PQFDLVVANI  103 (232)
Q Consensus        89 ~~~~~--~~~D~Vi~n~  103 (232)
                      .....  .+||.|+++-
T Consensus       126 ~~g~~~~~pfD~Iiv~~  142 (224)
T d1vbfa_         126 TLGYEEEKPYDRVVVWA  142 (224)
T ss_dssp             GGCCGGGCCEEEEEESS
T ss_pred             hhcchhhhhHHHHHhhc
Confidence            76432  3799988753

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.56  E-value=9.4e-15  Score=114.74  Aligned_cols=82  Identities=26%  Similarity=0.480  Sum_probs=72.0

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF   96 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~   96 (232)
                      .+..++......++.+|||||||+|.++..+++.+.+|+|+|+|+.|++.|++++...+.  +++++++|+++++++ .|
T Consensus        29 ~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          29 FVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             HHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCCSCE
T ss_pred             HHHHHHHHhcCCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccc--cchheehhhhhccccccc
Confidence            455566666667788999999999999999999889999999999999999999988764  699999999999876 79


Q ss_pred             ceeec
Q 047897           97 DLVVA  101 (232)
Q Consensus        97 D~Vi~  101 (232)
                      |.|++
T Consensus       107 D~I~~  111 (251)
T d1wzna1         107 DAVTM  111 (251)
T ss_dssp             EEEEE
T ss_pred             chHhh
Confidence            99886

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.55  E-value=1.9e-14  Score=110.33  Aligned_cols=95  Identities=22%  Similarity=0.383  Sum_probs=83.3

Q ss_pred             CCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE
Q 047897            7 SKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS   85 (232)
Q Consensus         7 ~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (232)
                      ..|| ++..|.+...|++.++++++++|||||||+|+.|..+++. +.+|+++|.++++++.+++++...+. .|+.+++
T Consensus        56 ~~g~-~is~P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~  133 (215)
T d1jg1a_          56 PAGQ-TVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVIL  133 (215)
T ss_dssp             STTC-EECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEE
T ss_pred             chhh-hhhhhhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEE
Confidence            3456 5566999999999999999999999999999999999884 67899999999999999999999988 6899999


Q ss_pred             cCCCCCCC--CCcceeeccc
Q 047897           86 KDALKTEF--PQFDLVVANI  103 (232)
Q Consensus        86 ~D~~~~~~--~~~D~Vi~n~  103 (232)
                      +|+.+...  .+||.|+.+-
T Consensus       134 gd~~~g~~~~~pfD~Iiv~~  153 (215)
T d1jg1a_         134 GDGSKGFPPKAPYDVIIVTA  153 (215)
T ss_dssp             SCGGGCCGGGCCEEEEEECS
T ss_pred             CccccCCcccCcceeEEeec
Confidence            99987543  3899988754

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.2e-14  Score=110.09  Aligned_cols=95  Identities=14%  Similarity=0.177  Sum_probs=79.9

Q ss_pred             CcccccCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCC----
Q 047897            8 KGQHILTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFH----   78 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~----   78 (232)
                      .|| ++..|.+...|++.+  ++++|++|||||||+|+.|..+++   ...+|+++|+++++++.|++++...+..    
T Consensus        53 ~~~-~is~P~~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~  131 (224)
T d1i1na_          53 FQA-TISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSS  131 (224)
T ss_dssp             TTE-EECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHT
T ss_pred             chh-hhhhhHHHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccc
Confidence            355 455699999999988  778999999999999999998887   3579999999999999999999865531    


Q ss_pred             ccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           79 DRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        79 ~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      .++.++.+|+.....+  +||.|+++-
T Consensus       132 ~~~~~~~gD~~~~~~~~~~fD~I~~~~  158 (224)
T d1i1na_         132 GRVQLVVGDGRMGYAEEAPYDAIHVGA  158 (224)
T ss_dssp             SSEEEEESCGGGCCGGGCCEEEEEECS
T ss_pred             cceEEEEeecccccchhhhhhhhhhhc
Confidence            4789999999876543  799999764

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=2.2e-14  Score=113.61  Aligned_cols=111  Identities=17%  Similarity=0.236  Sum_probs=89.9

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccE
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRL   81 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~   81 (232)
                      .++-.|-.+  |..+..|+..+++++|++|||+|||+|.+|..+++   ..++|+++|+++++++.|+++++..++.+++
T Consensus        80 ~~r~~qiiy--pkd~~~Ii~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v  157 (266)
T d1o54a_          80 MKRRTQIVY--PKDSSFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERV  157 (266)
T ss_dssp             CCC-CCCCC--HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGE
T ss_pred             ccCCccccc--hHHHHHHHHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCc
Confidence            344445443  78899999999999999999999999999999987   3579999999999999999999999987899


Q ss_pred             EEEEcCCCCC-CCCCcceeecccCcccc-hHHHHHHhc
Q 047897           82 NVISKDALKT-EFPQFDLVVANIPYGIS-SPLVAKLVY  117 (232)
Q Consensus        82 ~~~~~D~~~~-~~~~~D~Vi~n~p~~~~-~~~l~~~~~  117 (232)
                      .+..+|+... +...+|.|+.++|-.+. -+.+...+.
T Consensus       158 ~~~~~d~~~~~~~~~~D~V~~d~p~p~~~l~~~~~~LK  195 (266)
T d1o54a_         158 TIKVRDISEGFDEKDVDALFLDVPDPWNYIDKCWEALK  195 (266)
T ss_dssp             EEECCCGGGCCSCCSEEEEEECCSCGGGTHHHHHHHEE
T ss_pred             EEEeccccccccccceeeeEecCCCHHHHHHHHHhhcC
Confidence            9999998654 34479999999886554 233344443

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=3.1e-14  Score=108.15  Aligned_cols=81  Identities=21%  Similarity=0.311  Sum_probs=69.9

Q ss_pred             cCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccC
Q 047897           26 SSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIP  104 (232)
Q Consensus        26 ~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p  104 (232)
                      +....+.+|||||||+|..+..+++.+.+|+|+|+|+.+++.++++....++ +++++..+|+.+.+.+ +||+|+++..
T Consensus        26 ~~~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~I~~~~~  104 (198)
T d2i6ga1          26 AKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTFDGEYDFILSTVV  104 (198)
T ss_dssp             HTTSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCCCCCEEEEEEESC
T ss_pred             cccCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccccccccEEEEeee
Confidence            3333445999999999999999999999999999999999999999998887 5799999999887655 8999999766


Q ss_pred             ccc
Q 047897          105 YGI  107 (232)
Q Consensus       105 ~~~  107 (232)
                      ++.
T Consensus       105 ~~~  107 (198)
T d2i6ga1         105 MMF  107 (198)
T ss_dssp             GGG
T ss_pred             eec
Confidence            554

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.52  E-value=6.4e-15  Score=109.42  Aligned_cols=93  Identities=15%  Similarity=0.250  Sum_probs=72.7

Q ss_pred             HHHHHHHHHhcC--CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC---
Q 047897           16 QRVLDSIVRKSS--INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK---   90 (232)
Q Consensus        16 ~~~~~~i~~~~~--~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~---   90 (232)
                      ..+.+.+.+.+.  +.++.+|||+|||+|.++.+++..+++++++|.|+.+++.+++|++..++..++....+|...   
T Consensus        25 ~~v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~  104 (171)
T d1ws6a1          25 VRLRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEA  104 (171)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccc
Confidence            345555555442  357889999999999999999898999999999999999999999998886555554544321   


Q ss_pred             -CCCCCcceeecccCcccc
Q 047897           91 -TEFPQFDLVVANIPYGIS  108 (232)
Q Consensus        91 -~~~~~~D~Vi~n~p~~~~  108 (232)
                       ...++||+|++||||+..
T Consensus       105 ~~~~~~fD~If~DPPY~~~  123 (171)
T d1ws6a1         105 KAQGERFTVAFMAPPYAMD  123 (171)
T ss_dssp             HHTTCCEEEEEECCCTTSC
T ss_pred             cccCCccceeEEccccccC
Confidence             223479999999999765

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.52  E-value=5.1e-14  Score=112.57  Aligned_cols=86  Identities=17%  Similarity=0.227  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+.++.+++.+++.+|++|||||||.|.++..+++ .+++|+|+.+|+..++.++++....|+.+++++..+|..+++ .
T Consensus        48 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~  126 (285)
T d1kpga_          48 IAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD-E  126 (285)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC-C
T ss_pred             HHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc-c
Confidence            34567888999999999999999999999999888 789999999999999999999999998889999999998876 4


Q ss_pred             Ccceeecc
Q 047897           95 QFDLVVAN  102 (232)
Q Consensus        95 ~~D~Vi~n  102 (232)
                      +||.|++-
T Consensus       127 ~fD~i~si  134 (285)
T d1kpga_         127 PVDRIVSI  134 (285)
T ss_dssp             CCSEEEEE
T ss_pred             cccceeee
Confidence            89998873

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.7e-14  Score=114.54  Aligned_cols=101  Identities=24%  Similarity=0.338  Sum_probs=82.6

Q ss_pred             CCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhc-------
Q 047897            6 KSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADS-------   75 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~-------   75 (232)
                      ++-.|-.+  |.-+..|+..+++.+|++|||+|||+|.+|..|++   ...+|+++|+++++++.|+++++..       
T Consensus        76 ~r~tqiiy--pkD~~~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~  153 (324)
T d2b25a1          76 KRGTAITF--PKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLS  153 (324)
T ss_dssp             CCSSCCCC--HHHHHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCCcccc--cccHHHHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhh
Confidence            34444333  78889999999999999999999999999999998   4579999999999999999999754       


Q ss_pred             ---CCCccEEEEEcCCCCCCC----CCcceeecccCcccc
Q 047897           76 ---GFHDRLNVISKDALKTEF----PQFDLVVANIPYGIS  108 (232)
Q Consensus        76 ---~~~~~~~~~~~D~~~~~~----~~~D~Vi~n~p~~~~  108 (232)
                         +..+|+++.++|+.+...    ..||.|+.++|-.+.
T Consensus       154 ~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~LD~p~P~~  193 (324)
T d2b25a1         154 HVEEWPDNVDFIHKDISGATEDIKSLTFDAVALDMLNPHV  193 (324)
T ss_dssp             CSSCCCCCEEEEESCTTCCC-------EEEEEECSSSTTT
T ss_pred             hhhccccceeEEecchhhcccccCCCCcceEeecCcCHHH
Confidence               234689999999987643    379999999986654

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.51  E-value=4.8e-14  Score=108.65  Aligned_cols=76  Identities=24%  Similarity=0.350  Sum_probs=66.6

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccCc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIPY  105 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p~  105 (232)
                      +.++++|||||||+|.++..+++.+.+|+|+|+|+.|++.|++++...+  .++.++.+|+.+++.+  +||+|++.-.+
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l  112 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSI  112 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCG
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCceEEEEecch
Confidence            3577899999999999999999999999999999999999999998776  3578999999998764  89999986443

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.51  E-value=7.8e-14  Score=111.36  Aligned_cols=86  Identities=17%  Similarity=0.173  Sum_probs=76.5

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      .+-++.+++.+++++|++|||||||.|.++..+++ .+.+|+|+|+|+++++.|++++...++..++.+...|..+++ .
T Consensus        38 ~~k~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~~-~  116 (280)
T d2fk8a1          38 YAKVDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA-E  116 (280)
T ss_dssp             HHHHHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC-C
T ss_pred             HHHHHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhhc-c
Confidence            34577888999999999999999999999999887 589999999999999999999999998778999999987765 4


Q ss_pred             Ccceeecc
Q 047897           95 QFDLVVAN  102 (232)
Q Consensus        95 ~~D~Vi~n  102 (232)
                      +||.|++.
T Consensus       117 ~fD~i~si  124 (280)
T d2fk8a1         117 PVDRIVSI  124 (280)
T ss_dssp             CCSEEEEE
T ss_pred             chhhhhHh
Confidence            89998874

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=6.7e-14  Score=109.95  Aligned_cols=81  Identities=15%  Similarity=0.145  Sum_probs=66.5

Q ss_pred             CCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcceee
Q 047897           31 DDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDLVV  100 (232)
Q Consensus        31 ~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~Vi  100 (232)
                      ..++||+|||+|.++..++.  +..+++|+|+|+.+++.|++|+..+++.+++.+++.+..+..        ...||+|+
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~iv  141 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFCM  141 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEE
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEEE
Confidence            45899999999999999888  589999999999999999999999999889999987654321        22699999


Q ss_pred             cccCcccchHH
Q 047897          101 ANIPYGISSPL  111 (232)
Q Consensus       101 ~n~p~~~~~~~  111 (232)
                      |||||....+.
T Consensus       142 sNPPY~~~~e~  152 (250)
T d2h00a1         142 CNPPFFANQLE  152 (250)
T ss_dssp             ECCCCC-----
T ss_pred             ecCcccccchh
Confidence            99999976543

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.49  E-value=2.2e-14  Score=112.87  Aligned_cols=90  Identities=24%  Similarity=0.426  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-CCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-EFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-~~~   94 (232)
                      +..++.+.+..  .++++|||+|||+|.++..+++.+.+|+|+|+|+.+++.|++|+..++++  .+++++|+.+. +..
T Consensus       108 ~l~l~~l~~~~--~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~--~~~~~~d~~~~~~~~  183 (254)
T d2nxca1         108 RLALKALARHL--RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAALPFG  183 (254)
T ss_dssp             HHHHHHHHHHC--CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHHGGGC
T ss_pred             hHHHHHHHhhc--CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCc--eeEEecccccccccc
Confidence            34455544443  58899999999999999999998899999999999999999999998874  67899998753 345


Q ss_pred             CcceeecccCcccch
Q 047897           95 QFDLVVANIPYGISS  109 (232)
Q Consensus        95 ~~D~Vi~n~p~~~~~  109 (232)
                      +||+|++|+..+...
T Consensus       184 ~fD~V~ani~~~~l~  198 (254)
T d2nxca1         184 PFDLLVANLYAELHA  198 (254)
T ss_dssp             CEEEEEEECCHHHHH
T ss_pred             ccchhhhccccccHH
Confidence            899999997655443

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.49  E-value=5.2e-14  Score=110.33  Aligned_cols=70  Identities=24%  Similarity=0.390  Sum_probs=63.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Ccceeec
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVA  101 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~  101 (232)
                      ++.+|||+|||+|.++..+++.+.+|+|+|.|+.|++.|+++....+.  +++++++|+.+++.+ +||+|++
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~~~~fD~i~~  107 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNINRKFDLITC  107 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCSCCEEEEEE
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCc--cceeeccchhhhcccccccccce
Confidence            457899999999999999999999999999999999999999988774  599999999998755 8999886

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.47  E-value=4.4e-14  Score=106.59  Aligned_cols=89  Identities=13%  Similarity=0.049  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC-----------CccEEE
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF-----------HDRLNV   83 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-----------~~~~~~   83 (232)
                      ++.+.+ .+..+.+.++.+|||+|||+|..+..|++.+.+|+|+|+|+.|++.|+++....+.           ..++.+
T Consensus         6 ~~~~~~-~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (201)
T d1pjza_           6 NKDLQQ-YWSSLNVVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEI   84 (201)
T ss_dssp             THHHHH-HHHHHCCCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEE
T ss_pred             HHHHHH-HHHHcCCCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccce
Confidence            466555 45567788999999999999999999999999999999999999999999865421           134678


Q ss_pred             EEcCCCCCCCC---CcceeecccC
Q 047897           84 ISKDALKTEFP---QFDLVVANIP  104 (232)
Q Consensus        84 ~~~D~~~~~~~---~~D~Vi~n~p  104 (232)
                      +.+|+.+++..   .+|.|++...
T Consensus        85 ~~~d~~~l~~~~~~~~D~i~~~~~  108 (201)
T d1pjza_          85 WCGDFFALTARDIGHCAAFYDRAA  108 (201)
T ss_dssp             EEECCSSSTHHHHHSEEEEEEESC
T ss_pred             ecccccccccccccceeEEEEEee
Confidence            99999887643   6899887543

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.47  E-value=1.4e-13  Score=106.42  Aligned_cols=77  Identities=21%  Similarity=0.289  Sum_probs=68.1

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeeccc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANI  103 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~  103 (232)
                      ..++.+|||+|||+|..+..+++    ++.+|+|+|+|+.|++.|++++...+...++.+..+|+.+.+.+.+|+|+++.
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            35788999999999999999986    46799999999999999999998877667899999999999888899888864


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      -
T Consensus       117 ~  117 (225)
T d1im8a_         117 T  117 (225)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=7.7e-14  Score=107.75  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=65.4

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      ...++.+|||||||+|.++..++. .+.+|+|+|+|+.|++.|++++...+. .+++++++|+++++.+  +||+|++.-
T Consensus        57 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          57 NKTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             -CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-ccccccccccccccccccccccccccc
Confidence            345678999999999999999876 567899999999999999999987765 5789999999998754  799999854


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      .
T Consensus       136 ~  136 (222)
T d2ex4a1         136 V  136 (222)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.46  E-value=1.5e-13  Score=102.83  Aligned_cols=103  Identities=22%  Similarity=0.310  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-
Q 047897           15 NQRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-   91 (232)
Q Consensus        15 ~~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-   91 (232)
                      ...+.+.+.+.+.. .++.+|||++||+|.++.+++.++ .+|++||.|+.+++.+++|+...+...+++++++|+.+. 
T Consensus        25 ~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l  104 (182)
T d2fhpa1          25 TDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRAL  104 (182)
T ss_dssp             CHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhh
Confidence            35677888887753 468899999999999999998865 579999999999999999999888767899999999764 


Q ss_pred             -----CCCCcceeecccCcccc--hHHHHHHhc
Q 047897           92 -----EFPQFDLVVANIPYGIS--SPLVAKLVY  117 (232)
Q Consensus        92 -----~~~~~D~Vi~n~p~~~~--~~~l~~~~~  117 (232)
                           ...+||+|+.||||...  ...+..+..
T Consensus       105 ~~~~~~~~~fDlIflDPPY~~~~~~~~l~~i~~  137 (182)
T d2fhpa1         105 EQFYEEKLQFDLVLLDPPYAKQEIVSQLEKMLE  137 (182)
T ss_dssp             HHHHHTTCCEEEEEECCCGGGCCHHHHHHHHHH
T ss_pred             hhhcccCCCcceEEechhhhhhHHHHHHHHHHH
Confidence                 12379999999999754  344444443

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.46  E-value=1.1e-13  Score=109.30  Aligned_cols=88  Identities=20%  Similarity=0.222  Sum_probs=75.8

Q ss_pred             HHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-Cc
Q 047897           19 LDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QF   96 (232)
Q Consensus        19 ~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~   96 (232)
                      ..++.+..  .+|++|||+|||+|.++..+++.+ ++|+|+|+++.+++.+++|+..+++.++++++++|+.++... .|
T Consensus        98 r~ri~~~~--~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~  175 (260)
T d2frna1          98 RVRMAKVA--KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIA  175 (260)
T ss_dssp             HHHHHHHC--CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCE
T ss_pred             HHHHHhhc--CCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCC
Confidence            33455554  589999999999999999999854 699999999999999999999999988899999999988654 79


Q ss_pred             ceeecccCcccc
Q 047897           97 DLVVANIPYGIS  108 (232)
Q Consensus        97 D~Vi~n~p~~~~  108 (232)
                      |.|++|+|....
T Consensus       176 D~Ii~~~p~~~~  187 (260)
T d2frna1         176 DRILMGYVVRTH  187 (260)
T ss_dssp             EEEEECCCSSGG
T ss_pred             CEEEECCCCchH
Confidence            999999886543

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.45  E-value=1.7e-13  Score=109.51  Aligned_cols=93  Identities=17%  Similarity=0.238  Sum_probs=77.6

Q ss_pred             ccCCHHHHHHHHHhc-CCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           12 ILTNQRVLDSIVRKS-SINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        12 fl~~~~~~~~i~~~~-~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      +..+...++.+++.+ .+.++.+|||||||+|.++..+++   .+.+|+|+|+|+.+++.|+++....+.  +++++.+|
T Consensus         8 ~~~n~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d   85 (281)
T d2gh1a1           8 LYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGD   85 (281)
T ss_dssp             HHCCHHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESC
T ss_pred             HHhhHHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--cccccccc
Confidence            334577888888765 556778999999999999999987   357899999999999999999988764  69999999


Q ss_pred             CCCCCCC-CcceeecccCcc
Q 047897           88 ALKTEFP-QFDLVVANIPYG  106 (232)
Q Consensus        88 ~~~~~~~-~~D~Vi~n~p~~  106 (232)
                      +.+++++ +||+|+++-.++
T Consensus        86 ~~~~~~~~~fD~v~~~~~l~  105 (281)
T d2gh1a1          86 ATEIELNDKYDIAICHAFLL  105 (281)
T ss_dssp             TTTCCCSSCEEEEEEESCGG
T ss_pred             cccccccCCceEEEEehhhh
Confidence            9988765 799999876544

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.44  E-value=4.3e-13  Score=107.42  Aligned_cols=86  Identities=16%  Similarity=0.094  Sum_probs=76.6

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      ...++.+++.+++++|++|||||||.|.++..+++ .+++|+|+++|++.++.+++++...|+..++.+...|.... .+
T Consensus        47 ~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~-~~  125 (291)
T d1kpia_          47 YAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DE  125 (291)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CC
T ss_pred             HHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc-cc
Confidence            44677888999999999999999999999999887 78999999999999999999999999988899999997544 35


Q ss_pred             Ccceeecc
Q 047897           95 QFDLVVAN  102 (232)
Q Consensus        95 ~~D~Vi~n  102 (232)
                      +||.|++.
T Consensus       126 ~fD~i~si  133 (291)
T d1kpia_         126 PVDRIVSL  133 (291)
T ss_dssp             CCSEEEEE
T ss_pred             ccceEeec
Confidence            89999974

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=1.9e-13  Score=108.06  Aligned_cols=93  Identities=24%  Similarity=0.355  Sum_probs=75.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---   93 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---   93 (232)
                      +++.+++.....+..+++|+|||+|.++..++. ...+|+|+|+|+.+++.|++|+..+++..++.+..+|..+...   
T Consensus        98 lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~  177 (271)
T d1nv8a_          98 LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKF  177 (271)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGT
T ss_pred             hhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeeccccccccccc
Confidence            344444433333456899999999999998877 6689999999999999999999999987789999999987543   


Q ss_pred             CCcceeecccCcccchH
Q 047897           94 PQFDLVVANIPYGISSP  110 (232)
Q Consensus        94 ~~~D~Vi~n~p~~~~~~  110 (232)
                      ..||+|++||||-...+
T Consensus       178 ~~fDlIVsNPPYI~~~~  194 (271)
T d1nv8a_         178 ASIEMILSNPPYVKSSA  194 (271)
T ss_dssp             TTCCEEEECCCCBCGGG
T ss_pred             CcccEEEEcccccCccc
Confidence            47999999999987653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.43  E-value=4.8e-13  Score=109.18  Aligned_cols=178  Identities=16%  Similarity=0.194  Sum_probs=109.6

Q ss_pred             CCCcccccCCHHHHHHHHHhc----CCCCCCEEEEEcCCccHhHHHHHh-------cCCeEEEEEcCHHHHHHHHHHHhh
Q 047897            6 KSKGQHILTNQRVLDSIVRKS----SINPDDTVLEIGPGTGNLTLKLLE-------VSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus         6 k~~gq~fl~~~~~~~~i~~~~----~~~~~~~vLDiG~G~G~~t~~l~~-------~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      ...|+ +++++.+++.|+..+    ...++.+|||.|||+|.+...+.+       ....++|+|+|+.++..|+.++..
T Consensus        90 ~~~g~-~~TP~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~  168 (328)
T d2f8la1          90 IQVNH-QMTPDSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADL  168 (328)
T ss_dssp             CCGGG-CCCCHHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             ccCCe-EECcHHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHH
Confidence            34566 567788877776543    556778999999999999988865       123799999999999999999988


Q ss_pred             cCCCccEEEEEcCCCCCCC-CCcceeecccCcccchHH-HHHHhcCCCCc-cceEehhHHHHHHHHhcCCCCCcc-----
Q 047897           75 SGFHDRLNVISKDALKTEF-PQFDLVVANIPYGISSPL-VAKLVYGTKSF-RSATLLLQKEFARRLLASPGDSEF-----  146 (232)
Q Consensus        75 ~~~~~~~~~~~~D~~~~~~-~~~D~Vi~n~p~~~~~~~-l~~~~~~~~~~-~~~~~~~q~e~~~rl~~~~g~~~~-----  146 (232)
                      .+.  +..+.++|...... ..||+|++||||...... ........... .........+.+-+++.+.|...+     
T Consensus       169 ~~~--~~~~~~~d~~~~~~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~  246 (328)
T d2f8la1         169 QRQ--KMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDA  246 (328)
T ss_dssp             HTC--CCEEEESCTTSCCCCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGG
T ss_pred             hhh--hhhhhccccccccccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCc
Confidence            774  47788888876543 489999999999754211 11111111000 111111112223333333332111     


Q ss_pred             ---c----chhheeeeeeeeEEEEEecCCCcccCCCccEEEEEEEeCC
Q 047897          147 ---N----RLAVNVKLVADVEFVMDVSKRDFLPCPKVDSSVVIIRPKA  187 (232)
Q Consensus       147 ---~----~~~~~~~~~~~~~~~~~~~~~~f~P~p~v~s~~~~~~~~~  187 (232)
                         +    .+--.+-..+.+..+..+|.+.|.+ ..+.++++.+.++.
T Consensus       247 ~l~~~~~~~lR~~L~~~~~i~~ii~lp~~~F~~-~~~~t~ilvl~K~~  293 (328)
T d2f8la1         247 MFGTSDFAKVDKFIKKNGHIEGIIKLPETLFKS-EQARKSILILEKAD  293 (328)
T ss_dssp             GGGSTTHHHHHHHHHHHEEEEEEEECCGGGSCC--CCCEEEEEEEECC
T ss_pred             cccCchhHHHHHHHHhCCcEEEEEECCccccCC-CCCCeEEEEEECCC
Confidence               0    0000111224567778889888864 78888888887654

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.42  E-value=7.3e-13  Score=111.78  Aligned_cols=103  Identities=23%  Similarity=0.380  Sum_probs=86.8

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc---------------CCeEEEEEcCHHHHHHHH
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV---------------SKKVHAIEIDERMVEILN   69 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~---------------~~~v~~vD~~~~~~~~a~   69 (232)
                      +|..|| |+|++.+++.|++.+++.++.+|+|.+||+|.+...+.+.               ...++|+|+++.++..|+
T Consensus       138 ~k~~G~-f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~  216 (425)
T d2okca1         138 KSGAGQ-YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLAS  216 (425)
T ss_dssp             TTCCGG-GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHH
T ss_pred             hccchh-hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHH
Confidence            567888 6788999999999999888999999999999999888761               125999999999999999


Q ss_pred             HHHhhcCCC-ccEEEEEcCCCCCCC-CCcceeecccCcccc
Q 047897           70 RRAADSGFH-DRLNVISKDALKTEF-PQFDLVVANIPYGIS  108 (232)
Q Consensus        70 ~~~~~~~~~-~~~~~~~~D~~~~~~-~~~D~Vi~n~p~~~~  108 (232)
                      .++..+|.. .+..+..+|.++.+. ..||+|++||||+..
T Consensus       217 ~n~~l~g~~~~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~~  257 (425)
T d2okca1         217 MNLYLHGIGTDRSPIVCEDSLEKEPSTLVDVILANPPFGTR  257 (425)
T ss_dssp             HHHHHTTCCSSCCSEEECCTTTSCCSSCEEEEEECCCSSCC
T ss_pred             hhhhhcCCccccceeecCchhhhhcccccceEEecCCCCCC
Confidence            999887764 356788999887654 379999999999753

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.7e-13  Score=102.66  Aligned_cols=92  Identities=20%  Similarity=0.231  Sum_probs=75.5

Q ss_pred             HHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-
Q 047897           16 QRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-   92 (232)
                      ..+.+.+.+.+.. -.+.+|||++||+|.++.+++.++ .+|++||.|+.+++.+++|+...+. .+++++.+|++++. 
T Consensus        28 ~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~  106 (183)
T d2fpoa1          28 DRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLA  106 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHS
T ss_pred             HHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeeccccccc
Confidence            4556666655532 257799999999999999988865 5899999999999999999988776 57999999988752 


Q ss_pred             --CCCcceeecccCcccc
Q 047897           93 --FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~  108 (232)
                        ...||+|++||||...
T Consensus       107 ~~~~~fDlIf~DPPY~~~  124 (183)
T d2fpoa1         107 QKGTPHNIVFVDPPFRRG  124 (183)
T ss_dssp             SCCCCEEEEEECCSSSTT
T ss_pred             ccccccCEEEEcCccccc
Confidence              3479999999999864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.41  E-value=6.2e-13  Score=104.55  Aligned_cols=79  Identities=19%  Similarity=0.287  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--C-Ccceeeccc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--P-QFDLVVANI  103 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--~-~~D~Vi~n~  103 (232)
                      ..++++|||+|||+|..+..+++. ..+|+|+|+|+.+++.|+++....+...++.+.++|+...+.  . +||+|+++.
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~  101 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  101 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcc
Confidence            357889999999999999999885 468999999999999999999877665689999999976643  2 799999875


Q ss_pred             Ccc
Q 047897          104 PYG  106 (232)
Q Consensus       104 p~~  106 (232)
                      ..+
T Consensus       102 ~l~  104 (252)
T d1ri5a_         102 SFH  104 (252)
T ss_dssp             CGG
T ss_pred             eee
Confidence            443

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.41  E-value=3.7e-13  Score=103.78  Aligned_cols=94  Identities=15%  Similarity=0.261  Sum_probs=76.8

Q ss_pred             CcccccCCHHHHHHHHHhc--CCCCCCEEEEEcCCccHhHHHHHhc--------CCeEEEEEcCHHHHHHHHHHHhhc--
Q 047897            8 KGQHILTNQRVLDSIVRKS--SINPDDTVLEIGPGTGNLTLKLLEV--------SKKVHAIEIDERMVEILNRRAADS--   75 (232)
Q Consensus         8 ~gq~fl~~~~~~~~i~~~~--~~~~~~~vLDiG~G~G~~t~~l~~~--------~~~v~~vD~~~~~~~~a~~~~~~~--   75 (232)
                      .|| ++..|.+..++++.+  +++++++|||||||+|++|..+++.        ..+|+++|+++++++.+++++...  
T Consensus        57 ~~~-~is~P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~  135 (223)
T d1r18a_          57 GGV-TISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR  135 (223)
T ss_dssp             TTE-EECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             CCc-eeehhhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcch
Confidence            455 445599999999988  7889999999999999999998872        248999999999999999987543  


Q ss_pred             ---CCCccEEEEEcCCCCCCC--CCcceeeccc
Q 047897           76 ---GFHDRLNVISKDALKTEF--PQFDLVVANI  103 (232)
Q Consensus        76 ---~~~~~~~~~~~D~~~~~~--~~~D~Vi~n~  103 (232)
                         +. .|+.++++|+.+...  .+||.|+++-
T Consensus       136 ~~~~~-~nv~~~~~d~~~~~~~~~~fD~Iiv~~  167 (223)
T d1r18a_         136 SMLDS-GQLLIVEGDGRKGYPPNAPYNAIHVGA  167 (223)
T ss_dssp             HHHHH-TSEEEEESCGGGCCGGGCSEEEEEECS
T ss_pred             hhcCc-cEEEEEecccccccccccceeeEEEEe
Confidence               22 479999999987543  3899988754

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.39  E-value=1.2e-12  Score=103.13  Aligned_cols=86  Identities=20%  Similarity=0.243  Sum_probs=72.1

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-   94 (232)
                      ...+.+++.+...++.+|||+|||+|.+|..++. ...+|+++|+++.|++.|++++...   ++++++++|+.+++.+ 
T Consensus        80 ~~s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~~~~~~  156 (254)
T d1xtpa_          80 EGSRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPP  156 (254)
T ss_dssp             HHHHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCS
T ss_pred             HHHHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccccccCC
Confidence            3456777778777888999999999999999886 4678999999999999999988653   4689999999988764 


Q ss_pred             -CcceeecccCc
Q 047897           95 -QFDLVVANIPY  105 (232)
Q Consensus        95 -~~D~Vi~n~p~  105 (232)
                       .||+|++.-.+
T Consensus       157 ~~fD~I~~~~vl  168 (254)
T d1xtpa_         157 NTYDLIVIQWTA  168 (254)
T ss_dssp             SCEEEEEEESCG
T ss_pred             CccceEEeeccc
Confidence             79999986543

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.39  E-value=1.2e-12  Score=100.01  Aligned_cols=90  Identities=19%  Similarity=0.223  Sum_probs=71.6

Q ss_pred             HHHHHHHH--hcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC
Q 047897           17 RVLDSIVR--KSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE   92 (232)
Q Consensus        17 ~~~~~i~~--~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~   92 (232)
                      ++++.++.  .+++++|++|||+|||+|..+..+++  ...+|+|+|+++.+++.+++++...   +|+.++.+|+.+.+
T Consensus        41 klaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~  117 (209)
T d1nt2a_          41 KLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPW  117 (209)
T ss_dssp             HHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGG
T ss_pred             HHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCcc
Confidence            45555554  46788999999999999999999998  4469999999999999999998775   57999999998754


Q ss_pred             CC-----CcceeecccCcccch
Q 047897           93 FP-----QFDLVVANIPYGISS  109 (232)
Q Consensus        93 ~~-----~~D~Vi~n~p~~~~~  109 (232)
                      ..     .+|+|+++++.....
T Consensus       118 ~~~~~~~~vd~v~~~~~~~~~~  139 (209)
T d1nt2a_         118 KYSGIVEKVDLIYQDIAQKNQI  139 (209)
T ss_dssp             GTTTTCCCEEEEEECCCSTTHH
T ss_pred             ccccccceEEEEEecccChhhH
Confidence            32     456777777655443

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.37  E-value=6.7e-13  Score=102.59  Aligned_cols=70  Identities=21%  Similarity=0.345  Sum_probs=61.2

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-CcceeecccC
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-QFDLVVANIP  104 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-~~D~Vi~n~p  104 (232)
                      .+.+|||||||+|.++..+++.+.+|+|+|+|+++++.|+++..     .++.++++|+.+.+.+ +||+|++.-.
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~~~~fD~I~~~~v   90 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQLPRRYDNIVLTHV   90 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCCSSCEEEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccc-----cccccccccccccccccccccccccce
Confidence            46689999999999999999988999999999999999998753     4699999999887665 8999998543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.36  E-value=5.5e-13  Score=108.24  Aligned_cols=93  Identities=20%  Similarity=0.240  Sum_probs=77.8

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++.|....+.+++..   +|++|||+|||+|.++.+++..+.+|+++|+|+.+++.+++|+..+|+ ++++++++|+.++
T Consensus       130 ~flDqr~~r~~~~~~---~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~  205 (318)
T d1wxxa2         130 AYLDQRENRLYMERF---RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDL  205 (318)
T ss_dssp             CCGGGHHHHHHGGGC---CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHH
T ss_pred             cchhhhhhHHHHHHh---CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHH
Confidence            555666666555443   688999999999999999988788999999999999999999999998 5899999999774


Q ss_pred             ------CCCCcceeecccCcccc
Q 047897           92 ------EFPQFDLVVANIPYGIS  108 (232)
Q Consensus        92 ------~~~~~D~Vi~n~p~~~~  108 (232)
                            ..+.||+|++|+|....
T Consensus       206 ~~~~~~~~~~fD~Vi~DpP~~~~  228 (318)
T d1wxxa2         206 LRRLEKEGERFDLVVLDPPAFAK  228 (318)
T ss_dssp             HHHHHHTTCCEEEEEECCCCSCC
T ss_pred             hhhhHhhhcCCCEEEEcCCcccc
Confidence                  22479999999996543

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.35  E-value=1.1e-12  Score=106.76  Aligned_cols=96  Identities=25%  Similarity=0.344  Sum_probs=78.0

Q ss_pred             ccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           12 ILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        12 fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.|..-....+... +.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.+++|+..+|+.++++++++|+.+
T Consensus       128 ~flDqr~~r~~~~~~-~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~  206 (324)
T d2as0a2         128 FFLDQRENRLALEKW-VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFE  206 (324)
T ss_dssp             CCSTTHHHHHHHGGG-CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cccchhhHHHHHHhh-cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhh
Confidence            444555554454432 2578999999999999999998864 58999999999999999999999997789999999976


Q ss_pred             CC------CCCcceeecccCcccc
Q 047897           91 TE------FPQFDLVVANIPYGIS  108 (232)
Q Consensus        91 ~~------~~~~D~Vi~n~p~~~~  108 (232)
                      ..      ...||+|++|+|+...
T Consensus       207 ~~~~~~~~~~~fD~Vi~DpP~~~~  230 (324)
T d2as0a2         207 EMEKLQKKGEKFDIVVLDPPAFVQ  230 (324)
T ss_dssp             HHHHHHHTTCCEEEEEECCCCSCS
T ss_pred             hhHHHHhccCCCCchhcCCccccC
Confidence            42      2479999999997544

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.35  E-value=1.9e-12  Score=100.73  Aligned_cols=67  Identities=30%  Similarity=0.446  Sum_probs=57.7

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeecc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      .++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++..       ..++.+|+.+++++  +||+|++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~-------~~~~~~~~~~l~~~~~~fD~ii~~  109 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGV-------KNVVEAKAEDLPFPSGAFEAVLAL  109 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTC-------SCEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccc-------cccccccccccccccccccceeee
Confidence            467799999999999999999999999999999999999998742       23678999998764  79998863

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=4.2e-12  Score=104.68  Aligned_cols=102  Identities=20%  Similarity=0.253  Sum_probs=86.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC--
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF--   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~--   93 (232)
                      +.+++.+.+.++..++++|||+.||.|.++..|++.+.+|+|+|.++.+++.|++|+..++. .|++++.+|+.+...  
T Consensus       198 e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~~~~~~~~~~~~~  276 (358)
T d1uwva2         198 QKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGL-QNVTFYHENLEEDVTKQ  276 (358)
T ss_dssp             HHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCTTSCCSSS
T ss_pred             hHHHHHHHHhhccCCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHHhccc-ccceeeecchhhhhhhh
Confidence            44555666777888899999999999999999999999999999999999999999999998 589999999877431  


Q ss_pred             ----CCcceeecccCcccchHHHHHHhcC
Q 047897           94 ----PQFDLVVANIPYGISSPLVAKLVYG  118 (232)
Q Consensus        94 ----~~~D~Vi~n~p~~~~~~~l~~~~~~  118 (232)
                          ..+|+|+.|||-....+.+..++..
T Consensus       277 ~~~~~~~d~vilDPPR~G~~~~~~~l~~~  305 (358)
T d1uwva2         277 PWAKNGFDKVLLDPARAGAAGVMQQIIKL  305 (358)
T ss_dssp             GGGTTCCSEEEECCCTTCCHHHHHHHHHH
T ss_pred             hhhhccCceEEeCCCCccHHHHHHHHHHc
Confidence                2589999999987777776666653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=1e-12  Score=101.79  Aligned_cols=90  Identities=11%  Similarity=-0.032  Sum_probs=74.3

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcC----------------C
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSG----------------F   77 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~----------------~   77 (232)
                      .++.+++.+.+.+.+.++.+|||+|||+|..+..|++.+.+|+|+|+|+.+++.++++....+                .
T Consensus        29 ~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~  108 (229)
T d2bzga1          29 GHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSS  108 (229)
T ss_dssp             CCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEET
T ss_pred             CCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeec
Confidence            357777888788888889999999999999999999999999999999999999998875321                1


Q ss_pred             CccEEEEEcCCCCCCC---CCcceeeccc
Q 047897           78 HDRLNVISKDALKTEF---PQFDLVVANI  103 (232)
Q Consensus        78 ~~~~~~~~~D~~~~~~---~~~D~Vi~n~  103 (232)
                      ..+++++++|+.+++.   ..||+|+..-
T Consensus       109 ~~~v~~~~~d~~~l~~~~~~~fd~i~~~~  137 (229)
T d2bzga1         109 SGNISLYCCSIFDLPRTNIGKFDMIWDRG  137 (229)
T ss_dssp             TSSEEEEESCGGGGGGSCCCCEEEEEESS
T ss_pred             CCcEEEEEcchhhccccccCceeEEEEEE
Confidence            2478999999988753   3789888643

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.33  E-value=8e-12  Score=98.14  Aligned_cols=87  Identities=17%  Similarity=0.282  Sum_probs=73.3

Q ss_pred             HHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC
Q 047897           17 RVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP   94 (232)
Q Consensus        17 ~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~   94 (232)
                      ...+.+++.++..+..+|||||||+|.++..+++  +..+++++|+ +++++.+++++...++.++++++.+|+.+...+
T Consensus        67 ~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~  145 (253)
T d1tw3a2          67 VAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPR  145 (253)
T ss_dssp             TTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSS
T ss_pred             HHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhccc
Confidence            3445666777778888999999999999999998  4678999998 679999999999988878999999999876556


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ++|+|+++-.
T Consensus       146 ~~D~v~~~~v  155 (253)
T d1tw3a2         146 KADAIILSFV  155 (253)
T ss_dssp             CEEEEEEESC
T ss_pred             chhheeeccc
Confidence            8999887543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.31  E-value=4.7e-12  Score=95.15  Aligned_cols=90  Identities=12%  Similarity=0.260  Sum_probs=79.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +-|-+++++++.+.+.+++.+||++||+|..|..+++  ...+|+|+|.|+.+++.+++++...+  .++.++++++.+.
T Consensus         7 H~pVll~evi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~~   84 (192)
T d1m6ya2           7 HIPVMVREVIEFLKPEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYREA   84 (192)
T ss_dssp             CCCTTHHHHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGGH
T ss_pred             CCchHHHHHHHhhCCCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhhH
Confidence            4478899999999999999999999999999999998  46899999999999999999998765  6899999998764


Q ss_pred             -------CCCCcceeecccCc
Q 047897           92 -------EFPQFDLVVANIPY  105 (232)
Q Consensus        92 -------~~~~~D~Vi~n~p~  105 (232)
                             ...++|.|+.++.+
T Consensus        85 ~~~~~~~~~~~vdgIl~DlGv  105 (192)
T d1m6ya2          85 DFLLKTLGIEKVDGILMDLGV  105 (192)
T ss_dssp             HHHHHHTTCSCEEEEEEECSC
T ss_pred             HHHHHHcCCCCcceeeeccch
Confidence                   23578999998765

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.30  E-value=2.8e-12  Score=102.88  Aligned_cols=78  Identities=17%  Similarity=0.217  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCc-cEEEEEcCCCCCC------CCCcceeec
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHD-RLNVISKDALKTE------FPQFDLVVA  101 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~-~~~~~~~D~~~~~------~~~~D~Vi~  101 (232)
                      .++.+|||++||+|.++..++..+++|++||.|+.+++.|++|+..+++.. +++++++|+.++-      ...||+||+
T Consensus       131 ~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil  210 (309)
T d2igta1         131 DRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT  210 (309)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred             cCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence            467899999999999999999988899999999999999999999988753 6999999998752      247999999


Q ss_pred             ccCcc
Q 047897          102 NIPYG  106 (232)
Q Consensus       102 n~p~~  106 (232)
                      |||..
T Consensus       211 DPP~f  215 (309)
T d2igta1         211 DPPKF  215 (309)
T ss_dssp             CCCSE
T ss_pred             CCCcc
Confidence            99954

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=8.9e-12  Score=98.71  Aligned_cols=69  Identities=14%  Similarity=0.298  Sum_probs=60.3

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeecc
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVAN  102 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n  102 (232)
                      ..++.+|||||||+|.++..+++.  +..++|+|+|+.+++.|+++.      +++.++++|+.+++++  +||+|++.
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d~~~l~~~~~sfD~v~~~  154 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRI  154 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeeehhhccCCCCCEEEEeec
Confidence            356779999999999999999984  579999999999999998874      5789999999998875  79999975

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=9.1e-12  Score=100.74  Aligned_cols=86  Identities=22%  Similarity=0.310  Sum_probs=68.9

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Cc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QF   96 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~   96 (232)
                      +.|.+.....++.+|||||||+|.++..+++.+ .+|+|+|.++.+.. +++.....+..+++.++++|+.+++.+  ++
T Consensus        25 ~ai~~~~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~  103 (311)
T d2fyta1          25 DFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKV  103 (311)
T ss_dssp             HHHHHCGGGTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCE
T ss_pred             HHHHhccccCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccc
Confidence            444444555678999999999999999999965 68999999998764 555666666668999999999988654  89


Q ss_pred             ceeecccCcc
Q 047897           97 DLVVANIPYG  106 (232)
Q Consensus        97 D~Vi~n~p~~  106 (232)
                      |+|++.+..+
T Consensus       104 D~Ivse~~~~  113 (311)
T d2fyta1         104 DVIISEWMGY  113 (311)
T ss_dssp             EEEEECCCBT
T ss_pred             eEEEEeeeee
Confidence            9999976543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=4.5e-12  Score=103.30  Aligned_cols=89  Identities=17%  Similarity=0.306  Sum_probs=73.9

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc-------CC-CccEEE
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS-------GF-HDRLNV   83 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~-------~~-~~~~~~   83 (232)
                      ..+..++.+++.+++.++++|||+|||+|.++..++.  ...+++|+|+++.+++.|+++....       |. ..++++
T Consensus       135 ~~~~~~~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~  214 (328)
T d1nw3a_         135 TSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  214 (328)
T ss_dssp             CCHHHHHHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             hHHHHHHHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEE
Confidence            5678899999999999999999999999999998887  3468999999999999998876542       22 257999


Q ss_pred             EEcCCCCCCCC----Ccceeecc
Q 047897           84 ISKDALKTEFP----QFDLVVAN  102 (232)
Q Consensus        84 ~~~D~~~~~~~----~~D~Vi~n  102 (232)
                      +++|+++.++.    ..|+|++|
T Consensus       215 ~~gd~~~~~~~~~~~~advi~~~  237 (328)
T d1nw3a_         215 ERGDFLSEEWRERIANTSVIFVN  237 (328)
T ss_dssp             EECCTTSHHHHHHHHHCSEEEEC
T ss_pred             EECcccccccccccCcceEEEEc
Confidence            99999987654    34777765

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.27  E-value=1.3e-11  Score=93.73  Aligned_cols=78  Identities=17%  Similarity=0.195  Sum_probs=66.0

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC----CCCCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT----EFPQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~----~~~~~D~Vi~n~  103 (232)
                      ++..|||||||+|..+..+++  +...++|+|+++.++..+.++....++ .|+.++++|+..+    +..++|.|+.+.
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~f  107 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNF  107 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhcccccc
Confidence            345899999999999999998  568999999999999999999999998 5899999999764    334789888776


Q ss_pred             Ccccc
Q 047897          104 PYGIS  108 (232)
Q Consensus       104 p~~~~  108 (232)
                      |..+.
T Consensus       108 p~P~~  112 (204)
T d2fcaa1         108 SDPWP  112 (204)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            54443

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.27  E-value=2.1e-11  Score=92.48  Aligned_cols=78  Identities=13%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC----CCCcceeeccc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE----FPQFDLVVANI  103 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~----~~~~D~Vi~n~  103 (232)
                      .+..|||||||+|.++..+++  +...++|+|+++.++..|.++....++ +|+.++++|+.++.    ..++|.|+.+.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhcccc
Confidence            345899999999999999998  578999999999999999999999888 58999999998753    33789999888


Q ss_pred             Ccccc
Q 047897          104 PYGIS  108 (232)
Q Consensus       104 p~~~~  108 (232)
                      |..|.
T Consensus       110 PdPw~  114 (204)
T d1yzha1         110 SDPWP  114 (204)
T ss_dssp             CCCCC
T ss_pred             ccccc
Confidence            76554

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.26  E-value=9.9e-12  Score=101.25  Aligned_cols=82  Identities=21%  Similarity=0.464  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccce
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDL   98 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~   98 (232)
                      |.+.....++.+|||||||+|.++..+++.+ .+|+|+|.++ +++.|+++....+...++.++++|+.+++.+  ++|+
T Consensus        30 I~~~~~~~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~  108 (328)
T d1g6q1_          30 IIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDI  108 (328)
T ss_dssp             HHHHHHHHTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEE
T ss_pred             HHhccccCCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeE
Confidence            4343444578999999999999999999865 6899999986 7789999999888878999999999988754  7999


Q ss_pred             eecccC
Q 047897           99 VVANIP  104 (232)
Q Consensus        99 Vi~n~p  104 (232)
                      |++.+.
T Consensus       109 i~se~~  114 (328)
T d1g6q1_         109 IISEWM  114 (328)
T ss_dssp             EEECCC
T ss_pred             EEEEec
Confidence            998754

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.25  E-value=7.7e-12  Score=101.39  Aligned_cols=77  Identities=21%  Similarity=0.363  Sum_probs=65.3

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--Ccceeeccc
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANI  103 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~  103 (232)
                      ...++++|||||||+|.++..+++.+ .+|+|+|.++. ...++++...+++.+++.++++|+.+++.+  ++|+|++..
T Consensus        30 ~~~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~  108 (316)
T d1oria_          30 HLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEW  108 (316)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             ccCCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeee
Confidence            34478899999999999999999865 68999999975 577778888888878899999999998764  799999875


Q ss_pred             C
Q 047897          104 P  104 (232)
Q Consensus       104 p  104 (232)
                      .
T Consensus       109 ~  109 (316)
T d1oria_         109 M  109 (316)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.25  E-value=2.7e-11  Score=93.33  Aligned_cols=91  Identities=21%  Similarity=0.342  Sum_probs=72.9

Q ss_pred             HHHHHHHH---hcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           17 RVLDSIVR---KSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        17 ~~~~~i~~---~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ++.+.|+.   .+.+.+|++|||+|||+|.++..+++   ...+|+|+|+++.+++.++++++..   +++..+.+|+..
T Consensus        57 Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~  133 (227)
T d1g8aa_          57 KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATK  133 (227)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTC
T ss_pred             HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCC
Confidence            56666654   45688999999999999999999998   4589999999999999999998765   468888888865


Q ss_pred             CC-----CCCcceeecccCcccchH
Q 047897           91 TE-----FPQFDLVVANIPYGISSP  110 (232)
Q Consensus        91 ~~-----~~~~D~Vi~n~p~~~~~~  110 (232)
                      ..     .+.+|+|+.+++......
T Consensus       134 ~~~~~~~~~~vD~i~~d~~~~~~~~  158 (227)
T d1g8aa_         134 PEEYRALVPKVDVIFEDVAQPTQAK  158 (227)
T ss_dssp             GGGGTTTCCCEEEEEECCCSTTHHH
T ss_pred             cccccccccceEEEEEEccccchHH
Confidence            42     236789999887655433

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.23  E-value=3.9e-11  Score=92.67  Aligned_cols=73  Identities=23%  Similarity=0.321  Sum_probs=61.1

Q ss_pred             HHHHHHHH---hcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           17 RVLDSIVR---KSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        17 ~~~~~i~~---~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      ++.+.|..   .+.+.+|++|||+|||+|..+..+++  ....|+|+|+|+.|++.+++++...   +++..+.+|+...
T Consensus        58 klaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~  134 (230)
T d1g8sa_          58 KLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKP  134 (230)
T ss_dssp             HHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCG
T ss_pred             HHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccC
Confidence            56666655   45578999999999999999999998  4579999999999999999987654   5788899998765


Q ss_pred             C
Q 047897           92 E   92 (232)
Q Consensus        92 ~   92 (232)
                      .
T Consensus       135 ~  135 (230)
T d1g8sa_         135 Q  135 (230)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=2.9e-11  Score=104.40  Aligned_cols=103  Identities=15%  Similarity=0.248  Sum_probs=77.6

Q ss_pred             cCCCcccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--------------------CCeEEEEEcCHHH
Q 047897            5 HKSKGQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--------------------SKKVHAIEIDERM   64 (232)
Q Consensus         5 ~k~~gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--------------------~~~v~~vD~~~~~   64 (232)
                      ++..|| |+|++.+++.|++.+.+.++.+|+|.+||+|.+...+.+.                    ...++|+|+++.+
T Consensus       140 ~~~~Gq-fyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~  218 (524)
T d2ar0a1         140 KSGAGQ-YFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGT  218 (524)
T ss_dssp             -----C-CCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHH
T ss_pred             ccccch-hccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHH
Confidence            466788 7789999999999999989999999999999998876651                    1258999999999


Q ss_pred             HHHHHHHHhhcCCCc----cEEEEEcCCCCC---CCCCcceeecccCcccc
Q 047897           65 VEILNRRAADSGFHD----RLNVISKDALKT---EFPQFDLVVANIPYGIS  108 (232)
Q Consensus        65 ~~~a~~~~~~~~~~~----~~~~~~~D~~~~---~~~~~D~Vi~n~p~~~~  108 (232)
                      ...|+.++..++...    .-.+..+|.+..   ....||+|++||||+..
T Consensus       219 ~~la~~nl~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~  269 (524)
T d2ar0a1         219 RRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA  269 (524)
T ss_dssp             HHHHHHHHHTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTC
T ss_pred             HHHHHHHHHhhcccccccccchhhhhhhhhhcccccccceeEEecCCcccc
Confidence            999999998776532    123455555543   23479999999999743

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.21  E-value=6.8e-11  Score=92.88  Aligned_cols=91  Identities=22%  Similarity=0.265  Sum_probs=73.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      .+..+++..+..+..+|||||||+|.++..+++  +..+++++|+ +++++.+++++...++.+++.++.+|..+.....
T Consensus        69 ~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~  147 (256)
T d1qzza2          69 AYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPLPVT  147 (256)
T ss_dssp             TTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCC
T ss_pred             HHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccccccc
Confidence            345566677777888999999999999999998  4679999998 8899999999998888789999999998744347


Q ss_pred             cceeecccC-cccch
Q 047897           96 FDLVVANIP-YGISS  109 (232)
Q Consensus        96 ~D~Vi~n~p-~~~~~  109 (232)
                      +|+|++.-. .++..
T Consensus       148 ~D~v~~~~vLh~~~d  162 (256)
T d1qzza2         148 ADVVLLSFVLLNWSD  162 (256)
T ss_dssp             EEEEEEESCGGGSCH
T ss_pred             chhhhccccccccCc
Confidence            998886433 33443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=3.3e-11  Score=93.18  Aligned_cols=85  Identities=16%  Similarity=0.170  Sum_probs=66.7

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---   91 (232)
                      ..+...+.+.+. .+|.+|||||||+|..+..+++. +.+|+|+|+|+.+++.|++++...+  .++.++.+|+...   
T Consensus        40 ~~~~~~la~~~~-~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~  116 (229)
T d1zx0a1          40 TPYMHALAAAAS-SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPT  116 (229)
T ss_dssp             HHHHHHHHHHHT-TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGG
T ss_pred             HHHHHHHHHhhc-cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--cccccccccccccccc
Confidence            344455555554 56889999999999999999984 4789999999999999999998765  4688888887543   


Q ss_pred             -CCCCcceeeccc
Q 047897           92 -EFPQFDLVVANI  103 (232)
Q Consensus        92 -~~~~~D~Vi~n~  103 (232)
                       +..+||.|+.+.
T Consensus       117 ~~~~~fD~i~fD~  129 (229)
T d1zx0a1         117 LPDGHFDGILYDT  129 (229)
T ss_dssp             SCTTCEEEEEECC
T ss_pred             cccccccceeecc
Confidence             334789888654

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.20  E-value=2e-11  Score=98.73  Aligned_cols=93  Identities=14%  Similarity=0.219  Sum_probs=75.2

Q ss_pred             ccCCHH-HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCC
Q 047897           12 ILTNQR-VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDA   88 (232)
Q Consensus        12 fl~~~~-~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~   88 (232)
                      ++.|.. ....+++.+  .+|.+|||++||+|.++..++..+ .+|+++|+|+.+++.+++|+..++++ .+++++.+|+
T Consensus       127 lflDqR~~r~~l~~~~--~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~  204 (317)
T d2b78a2         127 IFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDV  204 (317)
T ss_dssp             SCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCH
T ss_pred             CcHHHHHHHHHHHHHh--hCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccH
Confidence            444444 445565554  478899999999999999888754 58999999999999999999998874 5799999999


Q ss_pred             CCC------CCCCcceeecccCcc
Q 047897           89 LKT------EFPQFDLVVANIPYG  106 (232)
Q Consensus        89 ~~~------~~~~~D~Vi~n~p~~  106 (232)
                      .+.      ....||+|++|||..
T Consensus       205 ~~~l~~~~~~~~~fD~Ii~DPP~f  228 (317)
T d2b78a2         205 FDYFKYARRHHLTYDIIIIDPPSF  228 (317)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCC
T ss_pred             HHHHHHHHhhcCCCCEEEEcChhh
Confidence            765      223799999999943

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=99.19  E-value=2.9e-11  Score=90.32  Aligned_cols=93  Identities=23%  Similarity=0.349  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHhcC-CeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC
Q 047897           16 QRVLDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLEVS-KKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE   92 (232)
Q Consensus        16 ~~~~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~   92 (232)
                      ..+.+.+.+.+.. -.+.+|||+.||+|.++.+++.++ .+|+.||.|...++.+++|++..+.. ....++..|+.+..
T Consensus        28 ~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l  107 (183)
T d2ifta1          28 DRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFL  107 (183)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHT
T ss_pred             HHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccc
Confidence            3456666665542 257799999999999999999966 59999999999999999999987764 35777778765531


Q ss_pred             -----CCCcceeecccCcccc
Q 047897           93 -----FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 -----~~~~D~Vi~n~p~~~~  108 (232)
                           ..+||+|+.||||...
T Consensus       108 ~~~~~~~~fDlIFlDPPY~~~  128 (183)
T d2ifta1         108 KQPQNQPHFDVVFLDPPFHFN  128 (183)
T ss_dssp             TSCCSSCCEEEEEECCCSSSC
T ss_pred             cccccCCcccEEEechhHhhh
Confidence                 2369999999999764

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.17  E-value=2.3e-11  Score=93.22  Aligned_cols=85  Identities=28%  Similarity=0.341  Sum_probs=71.3

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      +|++.+++.|++.+...++++|||.|||+|.++..+.+   ....++|+|+++..+..+          .+..++++|.+
T Consensus         2 ~TP~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~----------~~~~~~~~~~~   71 (223)
T d2ih2a1           2 ETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL   71 (223)
T ss_dssp             CCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred             CCCHHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc----------ccceeeeeehh
Confidence            57899999999999999999999999999999888876   356799999998754321          34678999998


Q ss_pred             CCCCC-CcceeecccCccc
Q 047897           90 KTEFP-QFDLVVANIPYGI  107 (232)
Q Consensus        90 ~~~~~-~~D~Vi~n~p~~~  107 (232)
                      ..+.. .||.|++|+||..
T Consensus        72 ~~~~~~~fd~ii~npP~~~   90 (223)
T d2ih2a1          72 LWEPGEAFDLILGNPPYGI   90 (223)
T ss_dssp             GCCCSSCEEEEEECCCCCC
T ss_pred             ccccccccceecccCcccc
Confidence            87654 8999999999964

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.8e-11  Score=96.85  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC---ccEEEEEcCCCCC---
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH---DRLNVISKDALKT---   91 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~---~~~~~~~~D~~~~---   91 (232)
                      ..+.+.+.+...++.+|||+|||+|.++..+++.+.+|+|+|+|+.|++.|+++....+..   .+..+..+|++..   
T Consensus        44 ~~~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (292)
T d1xvaa_          44 YKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  123 (292)
T ss_dssp             HHHHHHHHHHHTTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHHHHhhhcCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccc
Confidence            3444555555556789999999999999999999899999999999999999998765542   1345666666543   


Q ss_pred             -CC-CCcceeec
Q 047897           92 -EF-PQFDLVVA  101 (232)
Q Consensus        92 -~~-~~~D~Vi~  101 (232)
                       +. +.||.|++
T Consensus       124 ~~~~~~fd~v~~  135 (292)
T d1xvaa_         124 VPAGDGFDAVIC  135 (292)
T ss_dssp             SCCTTCEEEEEE
T ss_pred             cCCCCCceEEEE
Confidence             22 37898875

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.08  E-value=3.7e-11  Score=91.21  Aligned_cols=64  Identities=30%  Similarity=0.423  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC--CcceeecccC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP--QFDLVVANIP  104 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~--~~D~Vi~n~p  104 (232)
                      .++.+|||||||+|.++..+.    +++|+|+|+.+++.++++        +++++++|+.+++.+  +||+|+++..
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~~--------~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCCeEEEECCCCcccccccc----eEEEEeCChhhccccccc--------ccccccccccccccccccccccccccc
Confidence            356689999999999988774    579999999999998864        488999999998775  7999998653

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=9.1e-10  Score=83.92  Aligned_cols=83  Identities=16%  Similarity=0.380  Sum_probs=68.7

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC---
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT---   91 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~---   91 (232)
                      ++..++...   +..+|||||||+|..|..+++   .+.+|+++|+++.+++.+++++...|+.++++++.||+.+.   
T Consensus        47 lL~~lv~~~---kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~  123 (214)
T d2cl5a1          47 IMDAVIREY---SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQ  123 (214)
T ss_dssp             HHHHHHHHH---CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGG
T ss_pred             HHHHHHHhh---CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccc
Confidence            444444444   456999999999999999987   36899999999999999999999999988899999999764   


Q ss_pred             -----CCCCcceeeccc
Q 047897           92 -----EFPQFDLVVANI  103 (232)
Q Consensus        92 -----~~~~~D~Vi~n~  103 (232)
                           ....||+|+.+-
T Consensus       124 l~~~~~~~~~D~ifiD~  140 (214)
T d2cl5a1         124 LKKKYDVDTLDMVFLDH  140 (214)
T ss_dssp             HHHHSCCCCEEEEEECS
T ss_pred             hhhcccccccceeeecc
Confidence                 224689999873

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=7.2e-10  Score=84.71  Aligned_cols=91  Identities=19%  Similarity=0.206  Sum_probs=74.1

Q ss_pred             cCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCC
Q 047897           13 LTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDAL   89 (232)
Q Consensus        13 l~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~   89 (232)
                      ...+.....+...+......+|||||||+|.-|..++.   .+.+++++|.+++..+.|++++...|+.++++++.||+.
T Consensus        42 ~i~~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~  121 (219)
T d2avda1          42 MMTCEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPAL  121 (219)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehh
Confidence            34566555444444445677999999999999999998   368999999999999999999999999889999999986


Q ss_pred             CCC--------CCCcceeeccc
Q 047897           90 KTE--------FPQFDLVVANI  103 (232)
Q Consensus        90 ~~~--------~~~~D~Vi~n~  103 (232)
                      +..        ..+||+|+.+-
T Consensus       122 e~l~~~~~~~~~~~fD~ifiD~  143 (219)
T d2avda1         122 ETLDELLAAGEAGTFDVAVVDA  143 (219)
T ss_dssp             HHHHHHHHTTCTTCEEEEEECS
T ss_pred             hcchhhhhhcccCCccEEEEeC
Confidence            631        34799999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=8.6e-10  Score=91.41  Aligned_cols=89  Identities=16%  Similarity=0.286  Sum_probs=68.2

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcC-------C-CccEEE
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSG-------F-HDRLNV   83 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~-------~-~~~~~~   83 (232)
                      ..+..+..|++.+++.+++++||||||.|.++..++.  .+.+|+|||+++.+++.|+++....+       . .....+
T Consensus       200 l~~~~i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~  279 (406)
T d1u2za_         200 LLPNFLSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEF  279 (406)
T ss_dssp             BCHHHHHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEE
T ss_pred             CCHHHHHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccccee
Confidence            4588999999999999999999999999999999987  34689999999999999999886532       1 123333


Q ss_pred             -EEcCCCCCCC-----CCcceeecc
Q 047897           84 -ISKDALKTEF-----PQFDLVVAN  102 (232)
Q Consensus        84 -~~~D~~~~~~-----~~~D~Vi~n  102 (232)
                       ..+|+.+.+.     ...|+|+.|
T Consensus       280 ~~~~~f~~~~~~d~~~~~adVV~in  304 (406)
T d1u2za_         280 SLKKSFVDNNRVAELIPQCDVILVN  304 (406)
T ss_dssp             EESSCSTTCHHHHHHGGGCSEEEEC
T ss_pred             eeeechhhccccccccccceEEEEe
Confidence             4555554422     245677764

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=2.1e-09  Score=85.78  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=74.4

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC----
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF----   93 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~----   93 (232)
                      ..+..+++.+|++|||+++|+|+-|..+++   ...+|+|+|+++.-++.+++++...|+ .++.+...|+..+..    
T Consensus        85 l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~  163 (293)
T d2b9ea1          85 LPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPR  163 (293)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGG
T ss_pred             ccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccc
Confidence            345566788999999999999999988876   467899999999999999999999998 589999999987642    


Q ss_pred             -CCcceeecccCcccc
Q 047897           94 -PQFDLVVANIPYGIS  108 (232)
Q Consensus        94 -~~~D~Vi~n~p~~~~  108 (232)
                       +.||.|+.++|...+
T Consensus       164 ~~~fD~VL~DaPCSg~  179 (293)
T d2b9ea1         164 YHEVHYILLDPSCSGS  179 (293)
T ss_dssp             GTTEEEEEECCCCCC-
T ss_pred             cceeeEEeecCcccch
Confidence             369999999998765

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=8.8e-10  Score=87.34  Aligned_cols=78  Identities=14%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--------CCeEEEEEcCHHHHHHHHHHHhhcCCCcc--EEEEEcCCCC--------C
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--------SKKVHAIEIDERMVEILNRRAADSGFHDR--LNVISKDALK--------T   91 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--------~~~v~~vD~~~~~~~~a~~~~~~~~~~~~--~~~~~~D~~~--------~   91 (232)
                      +..+|||||||+|.++..++..        ...++|+|+++.|++.+++++......++  +.+...++.+        .
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            4447999999999998888662        24689999999999999999865432233  4455555532        2


Q ss_pred             CCCCcceeecccCccc
Q 047897           92 EFPQFDLVVANIPYGI  107 (232)
Q Consensus        92 ~~~~~D~Vi~n~p~~~  107 (232)
                      +..+||+|++.-.++.
T Consensus       120 ~~~~fD~I~~~~~l~~  135 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYY  135 (280)
T ss_dssp             SCCCEEEEEEESCGGG
T ss_pred             CCCceeEEEEccceec
Confidence            3348999998655433

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.86  E-value=2.4e-09  Score=82.10  Aligned_cols=90  Identities=17%  Similarity=0.165  Sum_probs=70.8

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCC
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALK   90 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~   90 (232)
                      ..+...+.+...+......+|||||+|+|+-|..+++   ..++++.+|.+++.++.|++++...|+.++++++.+|+.+
T Consensus        43 ~~~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~  122 (227)
T d1susa1          43 TSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALP  122 (227)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHH
Confidence            4454333332223333566999999999999999997   3689999999999999999999999998899999999976


Q ss_pred             CC---------CCCcceeeccc
Q 047897           91 TE---------FPQFDLVVANI  103 (232)
Q Consensus        91 ~~---------~~~~D~Vi~n~  103 (232)
                      .-         .++||+|+.+-
T Consensus       123 ~L~~l~~~~~~~~~fD~iFiDa  144 (227)
T d1susa1         123 VLDEMIKDEKNHGSYDFIFVDA  144 (227)
T ss_dssp             HHHHHHHCGGGTTCBSEEEECS
T ss_pred             HHHHHHhccccCCceeEEEecc
Confidence            41         23799999863

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.81  E-value=5.6e-09  Score=77.28  Aligned_cols=87  Identities=13%  Similarity=0.158  Sum_probs=73.9

Q ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--
Q 047897           15 NQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--   92 (232)
Q Consensus        15 ~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--   92 (232)
                      -|-+++++++.+.+.+++.++|..+|.|+.+..+++...+|+|+|.|+.+++.+++..     .+++.++++++.++.  
T Consensus         3 ~pVll~Evl~~l~~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~-----~~~~~~~~~~f~~~~~~   77 (182)
T d1wg8a2           3 VPVLYQEALDLLAVRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH-----LPGLTVVQGNFRHLKRH   77 (182)
T ss_dssp             CCTTHHHHHHHHTCCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-----CTTEEEEESCGGGHHHH
T ss_pred             cchHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-----ccceeEeehHHHHHHHH
Confidence            3567888999999999999999999999999999998899999999999999988642     268999999987652  


Q ss_pred             -----CCCcceeecccCcc
Q 047897           93 -----FPQFDLVVANIPYG  106 (232)
Q Consensus        93 -----~~~~D~Vi~n~p~~  106 (232)
                           .+.+|.|+.++.+.
T Consensus        78 l~~~~~~~vdgIl~DLGvS   96 (182)
T d1wg8a2          78 LAALGVERVDGILADLGVS   96 (182)
T ss_dssp             HHHTTCSCEEEEEEECSCC
T ss_pred             HHHcCCCccCEEEEEccCC
Confidence                 34689999987543

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.64  E-value=7e-09  Score=82.27  Aligned_cols=133  Identities=17%  Similarity=0.229  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC--
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT--   91 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~--   91 (232)
                      .......+..+++.++++|||+++|+|+-|..+++  ....|+|+|+++.-+..+++++...|.. ++.+...|....  
T Consensus        88 D~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~  166 (284)
T d1sqga2          88 DASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQW  166 (284)
T ss_dssp             CHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHH
T ss_pred             cccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchh
Confidence            34444555677888999999999999999999988  3478999999999999999999999973 565555555432  


Q ss_pred             -CCCCcceeecccCcccch-----HHHHHHhcCCCCccceEehhHHHHHHHH---hcCCCCCcccchhh
Q 047897           92 -EFPQFDLVVANIPYGISS-----PLVAKLVYGTKSFRSATLLLQKEFARRL---LASPGDSEFNRLAV  151 (232)
Q Consensus        92 -~~~~~D~Vi~n~p~~~~~-----~~l~~~~~~~~~~~~~~~~~q~e~~~rl---~~~~g~~~~~~~~~  151 (232)
                       ....||.|+.+.|...+.     |.+.+..... .. ......|.++.++.   +.++|...|+.+|+
T Consensus       167 ~~~~~fd~IL~DaPCSg~G~~rr~p~~~~~~~~~-~~-~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~  233 (284)
T d1sqga2         167 CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDR-DI-PELAQLQSEILDAIWPHLKTGGTLVYATCSV  233 (284)
T ss_dssp             HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTT-HH-HHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred             cccccccEEEEeccccccCccccccchhhccccc-hh-hHHHHHHHHHHHHHHHhcCCCceEEEeeecC
Confidence             123799999999987652     2333222111 11 12234677775553   44556688887776

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.56  E-value=4e-08  Score=75.80  Aligned_cols=87  Identities=20%  Similarity=0.282  Sum_probs=67.7

Q ss_pred             HHHhcCCCCC--CEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCC--------CccEEEEEcCCCCC
Q 047897           22 IVRKSSINPD--DTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGF--------HDRLNVISKDALKT   91 (232)
Q Consensus        22 i~~~~~~~~~--~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--------~~~~~~~~~D~~~~   91 (232)
                      +.+.+++..+  .+|||.-||.|..+..++..+++|+++|.++.+...+++.+.....        ..|++++++|+.++
T Consensus        78 l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~  157 (250)
T d2oyra1          78 VAKAVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTA  157 (250)
T ss_dssp             HHHHTTCBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHH
T ss_pred             HHHHhcCCCCCCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHH
Confidence            3444554443  4899999999999999999999999999999988887776654321        14899999998775


Q ss_pred             C---CCCcceeecccCcccc
Q 047897           92 E---FPQFDLVVANIPYGIS  108 (232)
Q Consensus        92 ~---~~~~D~Vi~n~p~~~~  108 (232)
                      -   .++||+|+.+|+|...
T Consensus       158 L~~~~~~~DvIYlDPMFp~~  177 (250)
T d2oyra1         158 LTDITPRPQVVYLDPMFPHK  177 (250)
T ss_dssp             STTCSSCCSEEEECCCCCCC
T ss_pred             HhccCCCCCEEEECCCCccc
Confidence            3   2379999999998643

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.4e-08  Score=77.59  Aligned_cols=48  Identities=17%  Similarity=0.189  Sum_probs=41.1

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV-SKKVHAIEIDERMVEILNRRAADSG   76 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~   76 (232)
                      .++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|++++...+
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~   98 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEP   98 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCT
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhcc
Confidence            46789999999999998877764 4579999999999999999987543

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.53  E-value=1.4e-07  Score=75.53  Aligned_cols=140  Identities=14%  Similarity=0.100  Sum_probs=96.5

Q ss_pred             cccccCCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEE
Q 047897            9 GQHILTNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVIS   85 (232)
Q Consensus         9 gq~fl~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~   85 (232)
                      |.-++.| ......+..+++.+|++|||+++|+|+-|..++.   ....++++|+++.-+..+++++...|. .++.+.+
T Consensus        96 G~~~vQD-~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~  173 (313)
T d1ixka_          96 GLIYIQE-ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFH  173 (313)
T ss_dssp             TSEEECC-HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEES
T ss_pred             ceEEEec-ccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hcccccc
Confidence            4434433 4445556677889999999999999999888876   457899999999999999999999988 5788899


Q ss_pred             cCCCCCCC--CCcceeecccCcccch-----HHHHHHhcCCCCccceEehhHHHHHH---HHhcCCCCCcccchhhe
Q 047897           86 KDALKTEF--PQFDLVVANIPYGISS-----PLVAKLVYGTKSFRSATLLLQKEFAR---RLLASPGDSEFNRLAVN  152 (232)
Q Consensus        86 ~D~~~~~~--~~~D~Vi~n~p~~~~~-----~~l~~~~~~~~~~~~~~~~~q~e~~~---rl~~~~g~~~~~~~~~~  152 (232)
                      .|....+.  ..||.|+.+.|...+.     +.+.+.... .. .......|.++..   +++.++|...|.++|+.
T Consensus       174 ~d~~~~~~~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~-~~-~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~  248 (313)
T d1ixka_         174 SSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTM-DD-IKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLE  248 (313)
T ss_dssp             SCGGGGGGGCCCEEEEEEECCTTSTTTCC--------CCH-HH-HHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             ccccccccccccccEEEEccccccCCceeeccchhhhhhh-hH-HHHHHHHHHHHHHhhhheeCCCcEEEEeeccCC
Confidence            99887653  3799999999987552     221111000 00 0111235555543   34555666888888764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.46  E-value=1.4e-07  Score=74.19  Aligned_cols=78  Identities=23%  Similarity=0.338  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhhc---------CCCccEEEEEcCCCCC--CCCCc
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAADS---------GFHDRLNVISKDALKT--EFPQF   96 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~---------~~~~~~~~~~~D~~~~--~~~~~   96 (232)
                      ....+||.||+|.|..+..+++ ...+|++||+|+.+++.|++.+...         ...++++++.+|+..+  ....|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            4567999999999999999888 4568999999999999999877432         1237899999999764  22479


Q ss_pred             ceeecccCcc
Q 047897           97 DLVVANIPYG  106 (232)
Q Consensus        97 D~Vi~n~p~~  106 (232)
                      |+|+.+++-.
T Consensus       151 DvIi~D~~~~  160 (276)
T d1mjfa_         151 DVIIADSTDP  160 (276)
T ss_dssp             EEEEEECCCC
T ss_pred             CEEEEeCCCC
Confidence            9999987643

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=98.43  E-value=1.1e-07  Score=73.37  Aligned_cols=91  Identities=14%  Similarity=0.140  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcC------------------------------------------CeE
Q 047897           18 VLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVS------------------------------------------KKV   55 (232)
Q Consensus        18 ~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~------------------------------------------~~v   55 (232)
                      ++...+.......+..++|..||+|.+..+.+-..                                          .++
T Consensus        38 il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i  117 (249)
T d1o9ga_          38 IFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSER  117 (249)
T ss_dssp             HHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCc
Confidence            33333334455566689999999999888765411                                          136


Q ss_pred             EEEEcCHHHHHHH---HHHHhhcCCCccEEEEEcCCCCCCC-------CCcceeecccCcccc
Q 047897           56 HAIEIDERMVEIL---NRRAADSGFHDRLNVISKDALKTEF-------PQFDLVVANIPYGIS  108 (232)
Q Consensus        56 ~~vD~~~~~~~~a---~~~~~~~~~~~~~~~~~~D~~~~~~-------~~~D~Vi~n~p~~~~  108 (232)
                      +|.|+|+.+++.+   ++|+...|+...+.+.+.|+.+...       ...++||+||||.--
T Consensus       118 ~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGER  180 (249)
T d1o9ga_         118 FGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER  180 (249)
T ss_dssp             HCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             cccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCcccc
Confidence            7999999999988   5688888988889999999976532       246899999999643

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=3.6e-07  Score=73.05  Aligned_cols=76  Identities=24%  Similarity=0.385  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc--C--CCccEEEEEcCCCCC---CCCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS--G--FHDRLNVISKDALKT---EFPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~--~--~~~~~~~~~~D~~~~---~~~~~D~V   99 (232)
                      ....+||.||.|.|..+..+++  ...+|++||+|+.+++.|++.+...  +  .+++++++.+|+.++   ....||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4567899999999999999987  3579999999999999999987432  1  136899999999875   23479999


Q ss_pred             ecccC
Q 047897          100 VANIP  104 (232)
Q Consensus       100 i~n~p  104 (232)
                      +.+++
T Consensus       156 i~D~~  160 (312)
T d1uira_         156 IIDLT  160 (312)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            98764

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=2.6e-06  Score=63.78  Aligned_cols=85  Identities=16%  Similarity=0.271  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHH--hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC
Q 047897           16 QRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF   93 (232)
Q Consensus        16 ~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~   93 (232)
                      +++++.+.-. ..-++.+++|+|+|.|.=+..++  .+..+++.+|.+..-+..+++-....++ .|++++++++++...
T Consensus        52 rHi~DSl~~~-~~~~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~R~E~~~~  129 (207)
T d1jsxa_          52 RHILDSIVVA-PYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQSRVEEFPS  129 (207)
T ss_dssp             HHHHHHHHHG-GGCCSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEECCTTTSCC
T ss_pred             HHhcchHhhh-hhhcCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeeccchhhhcc
Confidence            4455544322 22346799999999997665555  4678999999999999999999988888 589999999999765


Q ss_pred             C-Ccceeecc
Q 047897           94 P-QFDLVVAN  102 (232)
Q Consensus        94 ~-~~D~Vi~n  102 (232)
                      . +||+|++.
T Consensus       130 ~~~fD~V~sR  139 (207)
T d1jsxa_         130 EPPFDGVISR  139 (207)
T ss_dssp             CSCEEEEECS
T ss_pred             ccccceehhh
Confidence            4 79999985

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.33  E-value=2.4e-07  Score=73.33  Aligned_cols=76  Identities=18%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC---CCccEEEEEcCCCCCC---CCCcceeec
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG---FHDRLNVISKDALKTE---FPQFDLVVA  101 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~---~~~~D~Vi~  101 (232)
                      ...+||-||.|.|..+..+++.  ..+|++||+|+.+++.|++.+....   .+++++++.+|+.++-   ...||+|+.
T Consensus        89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~  168 (295)
T d1inla_          89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  168 (295)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEE
Confidence            4579999999999999999983  5789999999999999999875321   1368999999998753   237999999


Q ss_pred             ccCc
Q 047897          102 NIPY  105 (232)
Q Consensus       102 n~p~  105 (232)
                      +++-
T Consensus       169 D~~d  172 (295)
T d1inla_         169 DSTD  172 (295)
T ss_dssp             EC--
T ss_pred             cCCC
Confidence            8753

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.7e-07  Score=71.26  Aligned_cols=47  Identities=17%  Similarity=0.133  Sum_probs=39.4

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHHHhh
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE-VSKKVHAIEIDERMVEILNRRAAD   74 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~   74 (232)
                      ...+.+|||+|||+|.++...+. ...+|+|+|+++.+++.+++++..
T Consensus        52 ~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~   99 (263)
T d2g72a1          52 EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQE   99 (263)
T ss_dssp             CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhc
Confidence            34678999999999988765554 567899999999999999988754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.26  E-value=1.3e-06  Score=68.35  Aligned_cols=77  Identities=22%  Similarity=0.376  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc-C--CCccEEEEEcCCCCC---CCCCcceee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS-G--FHDRLNVISKDALKT---EFPQFDLVV  100 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~-~--~~~~~~~~~~D~~~~---~~~~~D~Vi  100 (232)
                      ....+||-||.|.|..+..+++.  ..+|+.+|+|+.+++.|++.+... +  .++|++++.+|+..+   ...+||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            35579999999999999999983  479999999999999999987432 1  237999999999774   234799999


Q ss_pred             cccCc
Q 047897          101 ANIPY  105 (232)
Q Consensus       101 ~n~p~  105 (232)
                      .+++-
T Consensus       154 ~D~~~  158 (274)
T d1iy9a_         154 VDSTE  158 (274)
T ss_dssp             ESCSS
T ss_pred             EcCCC
Confidence            98753

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.26  E-value=5.8e-06  Score=63.56  Aligned_cols=84  Identities=13%  Similarity=0.213  Sum_probs=58.5

Q ss_pred             HHHHHHhcC-CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           19 LDSIVRKSS-INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ...+++..+ .+...+|||||||+|.++..+++  +..+++.+|. |+.++       ..+..++++++.+|+.+. .+.
T Consensus        69 ~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~~-~p~  139 (244)
T d1fp1d2          69 MKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFAS-VPQ  139 (244)
T ss_dssp             HHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTTC-CCC
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCcccc-ccc
Confidence            344555566 45668999999999999999998  5678999997 44432       333347899999999863 456


Q ss_pred             cceeec-ccCcccchHH
Q 047897           96 FDLVVA-NIPYGISSPL  111 (232)
Q Consensus        96 ~D~Vi~-n~p~~~~~~~  111 (232)
                      .|+++. ++-.++..+.
T Consensus       140 ~D~~~l~~vLh~~~de~  156 (244)
T d1fp1d2         140 GDAMILKAVCHNWSDEK  156 (244)
T ss_dssp             EEEEEEESSGGGSCHHH
T ss_pred             ceEEEEehhhhhCCHHH
Confidence            687665 4444444433

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.8e-06  Score=67.99  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=63.2

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhc---CCCccEEEEEcCCCCCC---CCCccee
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADS---GFHDRLNVISKDALKTE---FPQFDLV   99 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~~~D~~~~~---~~~~D~V   99 (232)
                      ....++||-||.|.|..+..+++  ...+++.+|+|+.+++.|++.+...   ..+++++++.+|+..+-   ...||+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            34567899999999999999998  3579999999999999999987431   12379999999987652   3479999


Q ss_pred             ecccC
Q 047897          100 VANIP  104 (232)
Q Consensus       100 i~n~p  104 (232)
                      +++++
T Consensus       156 i~D~~  160 (285)
T d2o07a1         156 ITDSS  160 (285)
T ss_dssp             EEECC
T ss_pred             EEcCC
Confidence            99874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.18  E-value=1.2e-06  Score=69.68  Aligned_cols=76  Identities=24%  Similarity=0.422  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcC---CCccEEEEEcCCCCC---CCCCcceee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSG---FHDRLNVISKDALKT---EFPQFDLVV  100 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~---~~~~~D~Vi  100 (232)
                      ....+||-||.|.|..+..+++.  ..+|+.||+|+.+++.|++.+....   -+++++++.+|+.++   ....||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            34568999999999999999983  3799999999999999999875321   136899999999875   234799999


Q ss_pred             cccC
Q 047897          101 ANIP  104 (232)
Q Consensus       101 ~n~p  104 (232)
                      .+++
T Consensus       185 ~D~~  188 (312)
T d2b2ca1         185 TDSS  188 (312)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            9875

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.13  E-value=2.6e-06  Score=67.18  Aligned_cols=76  Identities=21%  Similarity=0.299  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhc---CCCccEEEEEcCCCCC----CCCCccee
Q 047897           29 NPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADS---GFHDRLNVISKDALKT----EFPQFDLV   99 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~---~~~~~~~~~~~D~~~~----~~~~~D~V   99 (232)
                      ....+||-||-|.|..+..+++.  ..++++||+|+++++.|++.+...   ..+++++++.+|+.+.    ....||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            34578999999999999999983  368999999999999999987432   1237899999998764    23479999


Q ss_pred             ecccC
Q 047897          100 VANIP  104 (232)
Q Consensus       100 i~n~p  104 (232)
                      +.+++
T Consensus       159 i~D~~  163 (290)
T d1xj5a_         159 IVDSS  163 (290)
T ss_dssp             EECCC
T ss_pred             EEcCC
Confidence            99865

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.06  E-value=5.1e-06  Score=67.78  Aligned_cols=86  Identities=16%  Similarity=0.207  Sum_probs=67.6

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCC--------------ccEEEEEcCCCCCC-
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFH--------------DRLNVISKDALKTE-   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~D~~~~~-   92 (232)
                      ++.+|||..||+|..+...+.  ...+|++.|+|+.+++.+++|++.++..              ..+.+.+.|+.... 
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~  124 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  124 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence            567999999999999997655  4569999999999999999999887652              24667777775442 


Q ss_pred             --CCCcceeecccCcccchHHHHHHh
Q 047897           93 --FPQFDLVVANIPYGISSPLVAKLV  116 (232)
Q Consensus        93 --~~~~D~Vi~n~p~~~~~~~l~~~~  116 (232)
                        ...||+|..+ ||+...+.+...+
T Consensus       125 ~~~~~fDvIDiD-PfGs~~pfldsAi  149 (375)
T d2dula1         125 ERHRYFHFIDLD-PFGSPMEFLDTAL  149 (375)
T ss_dssp             HSTTCEEEEEEC-CSSCCHHHHHHHH
T ss_pred             hhcCcCCcccCC-CCCCcHHHHHHHH
Confidence              2369999999 5888888775544

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.03  E-value=1.4e-05  Score=61.40  Aligned_cols=73  Identities=19%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeec-ccCcc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVA-NIPYG  106 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~-n~p~~  106 (232)
                      ...+|||||||+|.++..+++  +..+++..|. ++.++       ..+..+|++++.+|+.+. .+..|+++. ++-.+
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~-~p~aD~~~l~~vLHd  150 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTS-IPNADAVLLKYILHN  150 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTC-CCCCSEEEEESCGGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccC-CCCCcEEEEEeeccc
Confidence            456899999999999999998  5689999998 44433       233447999999999874 457898775 44444


Q ss_pred             cchHH
Q 047897          107 ISSPL  111 (232)
Q Consensus       107 ~~~~~  111 (232)
                      +..+.
T Consensus       151 w~d~~  155 (244)
T d1fp2a2         151 WTDKD  155 (244)
T ss_dssp             SCHHH
T ss_pred             CChHH
Confidence            55443

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.94  E-value=1.5e-05  Score=61.08  Aligned_cols=59  Identities=22%  Similarity=0.363  Sum_probs=53.5

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHh
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAA   73 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~   73 (232)
                      .+..+++++++... .+|+.|||.-||+|..+.+..+.+.+.+|+|++++.++.|++++.
T Consensus       197 kP~~L~~~lI~~~s-~~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         197 KPRDLIERIIRASS-NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCHHHHHHHHHHHC-CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHhC-CCCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHc
Confidence            45678999998875 678999999999999999999999999999999999999999975

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=4.6e-05  Score=56.23  Aligned_cols=60  Identities=17%  Similarity=0.261  Sum_probs=41.8

Q ss_pred             cccCCHHHHHHHHHhcCC-CCCCEEEEEcCCccH----hHHHHHhc------CCeEEEEEcCHHHHHHHHH
Q 047897           11 HILTNQRVLDSIVRKSSI-NPDDTVLEIGPGTGN----LTLKLLEV------SKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        11 ~fl~~~~~~~~i~~~~~~-~~~~~vLDiG~G~G~----~t~~l~~~------~~~v~~vD~~~~~~~~a~~   70 (232)
                      .|+.++...+.+.+.+.. .+.-+|+++|||+|-    ++..+.+.      ..+++|.|+|+.+++.|++
T Consensus         4 ~FFRd~~~f~~L~~~~~~~~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2           4 AFFREAHHFPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             CTTTTTTHHHHHHHHHHHSCSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCcCCcHHHHHHHHHHhccCCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            467777766666655432 234589999999997    33333331      2369999999999999874

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=4.1e-05  Score=55.88  Aligned_cols=75  Identities=13%  Similarity=0.235  Sum_probs=56.3

Q ss_pred             HHHhcC-CCCCCEEEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----
Q 047897           22 IVRKSS-INPDDTVLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----   92 (232)
Q Consensus        22 i~~~~~-~~~~~~vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----   92 (232)
                      |.+..+ ++++.+|||+||++|+++..+.+   ....++|+|+.+-           ... +++.++++|+.+..     
T Consensus        13 I~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i-~~~~~~~~d~~~~~~~~~~   80 (180)
T d1ej0a_          13 IQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPI-VGVDFLQGDFRDELVMKAL   80 (180)
T ss_dssp             HHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCC-TTEEEEESCTTSHHHHHHH
T ss_pred             HHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------ccc-CCceEeecccccchhhhhh
Confidence            344444 36788999999999999999887   3578999998661           122 57899999997742     


Q ss_pred             -----CCCcceeecccCcccc
Q 047897           93 -----FPQFDLVVANIPYGIS  108 (232)
Q Consensus        93 -----~~~~D~Vi~n~p~~~~  108 (232)
                           ...+|+|+++...+.+
T Consensus        81 ~~~~~~~~~DlVlSD~ap~~s  101 (180)
T d1ej0a_          81 LERVGDSKVQVVMSDMAPNMS  101 (180)
T ss_dssp             HHHHTTCCEEEEEECCCCCCC
T ss_pred             hhhccCcceeEEEecccchhc
Confidence                 2368999999765554

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.85  E-value=0.00012  Score=56.00  Aligned_cols=83  Identities=16%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             HHHHHHhcCC-CCCCEEEEEcCCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCC
Q 047897           19 LDSIVRKSSI-NPDDTVLEIGPGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQ   95 (232)
Q Consensus        19 ~~~i~~~~~~-~~~~~vLDiG~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~   95 (232)
                      ...+++..+. ....+|||||||+|.++..+++  +..+++++|..+. ++       .....++++++.+|+.+. .+.
T Consensus        69 ~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~~-~P~  139 (243)
T d1kyza2          69 MKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFVS-IPK  139 (243)
T ss_dssp             HHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTTC-CCC
T ss_pred             HHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEeccccccc-CCC
Confidence            3445555554 3357899999999999999999  5789999998542 22       222336899999999763 343


Q ss_pred             cce-eecccCcccchH
Q 047897           96 FDL-VVANIPYGISSP  110 (232)
Q Consensus        96 ~D~-Vi~n~p~~~~~~  110 (232)
                      .|. ++.++-..+..+
T Consensus       140 ad~~~l~~vlh~~~d~  155 (243)
T d1kyza2         140 ADAVFMKWICHDWSDE  155 (243)
T ss_dssp             CSCEECSSSSTTSCHH
T ss_pred             cceEEEEEEeecCCHH
Confidence            443 334544444443

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.84  E-value=1.6e-05  Score=60.62  Aligned_cols=72  Identities=15%  Similarity=0.231  Sum_probs=59.8

Q ss_pred             CCCEEEEEcCCccHhHHHHH--hcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcceeecc
Q 047897           30 PDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~--~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~Vi~n  102 (232)
                      .+.+++|||+|.|.=+..++  .+..+++.+|.+..-+..++.-....++ .++.++++.++++..     ++||+|++.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~sR  148 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTAR  148 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEEh
Confidence            56789999999997665554  4778999999999999999988888888 589999999886532     378999985

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.81  E-value=1.6e-05  Score=62.90  Aligned_cols=61  Identities=23%  Similarity=0.254  Sum_probs=54.7

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      .+..+++++++..- .+|+.|||.-||+|..+.++...+.+.+|+|++++.++.+++++...
T Consensus       235 kP~~L~~rlI~~~s-~~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         235 FPAKLPEFFIRMLT-EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             CCTHHHHHHHHHHC-CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHGGGSCS
T ss_pred             CchHHHHHhhhhcc-cCCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHHHHHHhc
Confidence            46789999998774 58899999999999999999999999999999999999999988653

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.75  E-value=5.4e-05  Score=58.62  Aligned_cols=61  Identities=18%  Similarity=0.249  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHhcCCCCCCEEEEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhc
Q 047897           14 TNQRVLDSIVRKSSINPDDTVLEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADS   75 (232)
Q Consensus        14 ~~~~~~~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~   75 (232)
                      .+..+++++++... .+|+.|||.-||+|..+.+....+.+.+|+|+|+..++.|++++...
T Consensus       192 kP~~L~~~~I~~~s-~~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         192 KPAAVIERLVRALS-HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CCHHHHHHHHHHHS-CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             cchhHHHHHHHhhc-CCCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence            45778999998774 68999999999999999999999999999999999999999999754

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=97.59  E-value=1.8e-05  Score=60.19  Aligned_cols=85  Identities=14%  Similarity=0.179  Sum_probs=54.9

Q ss_pred             cccccCCHHHH---HHHHHhcCCCCCCEEEEEcCCccHhHHHHHh------cCCeEEEEEcCHHHHHHHHHHHhhcCCCc
Q 047897            9 GQHILTNQRVL---DSIVRKSSINPDDTVLEIGPGTGNLTLKLLE------VSKKVHAIEIDERMVEILNRRAADSGFHD   79 (232)
Q Consensus         9 gq~fl~~~~~~---~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~------~~~~v~~vD~~~~~~~~a~~~~~~~~~~~   79 (232)
                      |...+..|.-+   ..++...   +..+|||||++.|.-+..+++      ..++++++|+++........      ...
T Consensus        59 G~p~~k~p~d~~~~~eli~~~---KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~------~~~  129 (232)
T d2bm8a1          59 GLRMLKDPDTQAVYHDMLWEL---RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DME  129 (232)
T ss_dssp             TEECCSCHHHHHHHHHHHHHH---CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCT
T ss_pred             ceecccCHHHHHHHHHHHHHh---CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhc------ccc
Confidence            34444555543   4444444   456899999999987766654      35799999998754432211      126


Q ss_pred             cEEEEEcCCCCCCC------CCcceeecc
Q 047897           80 RLNVISKDALKTEF------PQFDLVVAN  102 (232)
Q Consensus        80 ~~~~~~~D~~~~~~------~~~D~Vi~n  102 (232)
                      +++++++|..+...      ..+|.|+.+
T Consensus       130 ~I~~i~gDs~~~~~~~~l~~~~~dlIfID  158 (232)
T d2bm8a1         130 NITLHQGDCSDLTTFEHLREMAHPLIFID  158 (232)
T ss_dssp             TEEEEECCSSCSGGGGGGSSSCSSEEEEE
T ss_pred             ceeeeecccccHHHHHHHHhcCCCEEEEc
Confidence            89999999876432      146777754

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=97.43  E-value=0.00021  Score=56.27  Aligned_cols=68  Identities=19%  Similarity=0.298  Sum_probs=55.3

Q ss_pred             EEEEEcCCccHhHHHHHhcCCeEE-EEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCccc
Q 047897           33 TVLEIGPGTGNLTLKLLEVSKKVH-AIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPYGI  107 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~~~~~v~-~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~~~  107 (232)
                      +|||+-||.|.++..+-+.+.+++ ++|+|+.+.+..+.|+.       -.++.+|+.+++.   +..|++++.+|...
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~-------~~~~~~Di~~~~~~~~~~~dll~~g~PCq~   73 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS-------AKLIKGDISKISSDEFPKCDGIIGGPPCQS   73 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC-------SEEEESCTTTSCGGGSCCCSEEEECCCCTT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC-------CCCccCChhhCCHhHcccccEEeecccccc
Confidence            699999999999998877665554 99999999998888862       3467899998754   36899999998764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=97.34  E-value=0.00021  Score=56.58  Aligned_cols=70  Identities=17%  Similarity=0.237  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCccHhHHHHHhcCCeE-EEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC---CCcceeecccCc
Q 047897           30 PDDTVLEIGPGTGNLTLKLLEVSKKV-HAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF---PQFDLVVANIPY  105 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~~l~~~~~~v-~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~---~~~D~Vi~n~p~  105 (232)
                      .+.+|||+-||.|+++..+-+.+.++ .++|+|+.+++..+.|+..        ..++|+.++..   +.+|++++.+|+
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~--------~~~~Di~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGE--------KPEGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSC--------CCBSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCC--------CCcCchhcCchhhcceeeeeeccccc
Confidence            46799999999999999998866555 5799999999999988732        13588887753   378999999986


Q ss_pred             cc
Q 047897          106 GI  107 (232)
Q Consensus       106 ~~  107 (232)
                      ..
T Consensus        82 q~   83 (327)
T d2c7pa1          82 QA   83 (327)
T ss_dssp             TT
T ss_pred             ch
Confidence            64

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.21  E-value=0.00015  Score=57.69  Aligned_cols=71  Identities=21%  Similarity=0.291  Sum_probs=54.0

Q ss_pred             CEEEEEcCCccHhHHHHHhcCC--e-EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCC-----Ccceeeccc
Q 047897           32 DTVLEIGPGTGNLTLKLLEVSK--K-VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFP-----QFDLVVANI  103 (232)
Q Consensus        32 ~~vLDiG~G~G~~t~~l~~~~~--~-v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~-----~~D~Vi~n~  103 (232)
                      .+|+|+.||.|.++..+-..+.  + +.++|+++.+++..+.|+      ++..++.+|+.+....     .+|++++.+
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~ggp   76 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILMSP   76 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEECC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEeec
Confidence            4799999999999988866442  3 679999999999988876      3456788898877542     689999999


Q ss_pred             Ccccc
Q 047897          104 PYGIS  108 (232)
Q Consensus       104 p~~~~  108 (232)
                      |...-
T Consensus        77 PCq~f   81 (343)
T d1g55a_          77 PCQPF   81 (343)
T ss_dssp             C----
T ss_pred             ccccc
Confidence            97643

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.09  E-value=0.00023  Score=53.93  Aligned_cols=85  Identities=15%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             HHHHHhcCCCCCCEEEEEcCCccHhHHHHHhc--CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCCCc
Q 047897           20 DSIVRKSSINPDDTVLEIGPGTGNLTLKLLEV--SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFPQF   96 (232)
Q Consensus        20 ~~i~~~~~~~~~~~vLDiG~G~G~~t~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~~   96 (232)
                      ..|.+..-+.++.+|+|+|||+|..+..++..  ...|.|+++--...+. -......+. +-+++... |+...+....
T Consensus        56 ~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~l~~~~~  133 (257)
T d2p41a1          56 RWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFFIPPERC  133 (257)
T ss_dssp             HHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTTSCCCCC
T ss_pred             HHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHhcCCCcC
Confidence            34555556778889999999999999999874  3678888873221000 000011111 22455444 3444444578


Q ss_pred             ceeecccCcc
Q 047897           97 DLVVANIPYG  106 (232)
Q Consensus        97 D~Vi~n~p~~  106 (232)
                      |.|+|++-=+
T Consensus       134 D~vlcDm~es  143 (257)
T d2p41a1         134 DTLLCDIGES  143 (257)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEeeCCCC
Confidence            9999997433

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=96.97  E-value=0.0011  Score=53.40  Aligned_cols=93  Identities=18%  Similarity=0.227  Sum_probs=54.1

Q ss_pred             cCCCcc--cccCCHHHHHHHH-----------HhcCCCCCCEEEEEcCCccHhHHHHHh---------cCCeEEEEEcCH
Q 047897            5 HKSKGQ--HILTNQRVLDSIV-----------RKSSINPDDTVLEIGPGTGNLTLKLLE---------VSKKVHAIEIDE   62 (232)
Q Consensus         5 ~k~~gq--~fl~~~~~~~~i~-----------~~~~~~~~~~vLDiG~G~G~~t~~l~~---------~~~~v~~vD~~~   62 (232)
                      +...|.  .|.|.|.+-.-+-           +.++..+.-.|+|+|+|+|.++..+++         ...+++.+|.++
T Consensus        41 ~~~iG~~GDF~Tsp~is~~Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~  120 (365)
T d1zkda1          41 RDPLGREGDFTTSPEISQMFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINP  120 (365)
T ss_dssp             C--------CCSHHHHCHHHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCH
T ss_pred             CCCCCCCCCeECCCchHHHHHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccch
Confidence            445555  5888877633222           223333445799999999999988766         134689999999


Q ss_pred             HHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecc
Q 047897           63 RMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVAN  102 (232)
Q Consensus        63 ~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n  102 (232)
                      .+.+.-++++...   .++.++ .|..+.+. ..-+|++|
T Consensus       121 ~L~~~Q~~~l~~~---~~i~w~-~~~~~~~~-~~g~iiaN  155 (365)
T d1zkda1         121 VLRQKQQTLLAGI---RNIHWH-DSFEDVPE-GPAVILAN  155 (365)
T ss_dssp             HHHHHHHHHSTTC---SSEEEE-SSGGGSCC-SSEEEEEE
T ss_pred             hHHHHHHHHhccc---ccceec-cChhhccc-CCeEEEec
Confidence            9888777776532   345443 33333331 12355555

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.003  Score=46.17  Aligned_cols=49  Identities=14%  Similarity=0.167  Sum_probs=40.0

Q ss_pred             HHhcCCCCCCEEEEEcCCc-cHhHHHHHh--cCCeEEEEEcCHHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPGT-GNLTLKLLE--VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G~-G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      ++.+++++|++||-+|||. |.++..+++  ...+|+++|.+++-++.|++.
T Consensus        18 ~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          18 AVTAGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             HHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            5678899999999999998 556666665  346999999999998888765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.003  Score=44.86  Aligned_cols=50  Identities=16%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             HHHhcCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .+...+++++++||-+|+| .|.++..+++ .+.+|+++|.+++-++.+++.
T Consensus        19 al~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          19 PLVRNGCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             HHHHTTCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH
T ss_pred             HHHHhCcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc
Confidence            3456788899999999998 5666666666 788999999999988888764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.29  E-value=0.0057  Score=43.24  Aligned_cols=50  Identities=22%  Similarity=0.293  Sum_probs=40.6

Q ss_pred             HHHhcCCCCCCEEEEEcCC-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPG-TGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .++..+++++++||=+||| .|.++..+++ .+.+|+++|.+++-++.+++.
T Consensus        18 a~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          18 ACRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc
Confidence            3566788899999999998 4556666666 688999999999998888775

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.012  Score=44.59  Aligned_cols=76  Identities=20%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +++.+|=.|++.|.   ++..|++.+.+|+.++.+++-++.+.+.+...+.+.++..+.+|+.+..            +.
T Consensus         9 k~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g   88 (257)
T d1xg5a_           9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS   88 (257)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            57789999988774   5666666899999999999988888888777665568999999998752            23


Q ss_pred             CcceeecccCc
Q 047897           95 QFDLVVANIPY  105 (232)
Q Consensus        95 ~~D~Vi~n~p~  105 (232)
                      ..|++|.|...
T Consensus        89 ~iD~lVnnAg~   99 (257)
T d1xg5a_          89 GVDICINNAGL   99 (257)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEecccc
Confidence            57988887543

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.66  E-value=0.01  Score=40.11  Aligned_cols=61  Identities=20%  Similarity=0.302  Sum_probs=43.3

Q ss_pred             EEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeeccc
Q 047897           34 VLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANI  103 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~  103 (232)
                      |+=+|  .|.++..+++    .+..|+.+|.|++.++.+++.+       +..+++||+.+..      ....|.+++-.
T Consensus         3 IvI~G--~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t   73 (132)
T d1lssa_           3 IIIAG--IGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAVT   73 (132)
T ss_dssp             EEEEC--CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEECC
T ss_pred             EEEEC--CCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhcccC
Confidence            44444  5777776665    6789999999999988776542       3678999998752      34667777643

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.64  E-value=0.014  Score=41.63  Aligned_cols=48  Identities=15%  Similarity=0.167  Sum_probs=37.8

Q ss_pred             HhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           24 RKSSINPDDTVLEIGPGT-GNLTLKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        24 ~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      +..++++|++||=+|+|. |.++..+++ .++ +|+++|.+++-.+.+++.
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            445678899999999874 566667776 564 899999999999888764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=95.60  E-value=0.015  Score=41.43  Aligned_cols=51  Identities=16%  Similarity=0.135  Sum_probs=41.6

Q ss_pred             HHHHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cC-CeEEEEEcCHHHHHHHHHH
Q 047897           21 SIVRKSSINPDDTVLEIGPGT-GNLTLKLLE-VS-KKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~-~~v~~vD~~~~~~~~a~~~   71 (232)
                      ..++..+++++++||=+|||. |.++..+++ .+ .+|+++|.++.-.+.+++.
T Consensus        18 ~a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          18 HGAELADIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             HHHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            345778899999999999987 777777777 45 4799999999988888764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.23  E-value=0.052  Score=40.66  Aligned_cols=73  Identities=18%  Similarity=0.294  Sum_probs=58.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .|..+|=-|++.|.   ++..+++.+.+|+.+|.+++-++...+.+...+  .++..+.+|..+..            ++
T Consensus         6 ~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           6 TGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            47788888988874   777777789999999999998888888877665  57999999998763            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|+++.|-.
T Consensus        84 ~idilinnag   93 (244)
T d1yb1a_          84 DVSILVNNAG   93 (244)
T ss_dssp             CCSEEEECCC
T ss_pred             CCceeEeecc
Confidence            5788887743

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.02  E-value=0.053  Score=40.75  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +++.+|=.|.+.|   .++..|++.+.+|+.++.+++.++.+.+.+...+  .++..+.+|+.+..            +.
T Consensus         9 enKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   86 (251)
T d2c07a1           9 ENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFG--YESSGYAGDVSKKEEISEVINKILTEHK   86 (251)
T ss_dssp             SSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTT--CCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5677888887666   2455555578999999999999988888887765  46899999998752            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|..
T Consensus        87 ~iDilvnnag   96 (251)
T d2c07a1          87 NVDILVNNAG   96 (251)
T ss_dssp             CCCEEEECCC
T ss_pred             Cceeeeeccc
Confidence            6788888753

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=94.94  E-value=0.056  Score=40.77  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|.   ++..+++.+.+|+.+|.+++.++.+.+.+...+...++..+.+|+.+..            +.
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   82 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG   82 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            46788888987773   6667777899999999999988887777765544457889999998753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus        83 ~iDiLVnnA   91 (258)
T d1iy8a_          83 RIDGFFNNA   91 (258)
T ss_dssp             CCSEEEECC
T ss_pred             CCCEEEECC
Confidence            578888763

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.86  E-value=0.027  Score=39.99  Aligned_cols=50  Identities=16%  Similarity=0.246  Sum_probs=40.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cC-CeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGT-GNLTLKLLE-VS-KKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~-~~v~~vD~~~~~~~~a~~~   71 (232)
                      +++..++++|++||=+|||. |.++..+++ .+ .+|+++|.+++-.+.+++.
T Consensus        20 ~~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          20 AINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            45667889999999999988 777777777 44 5799999999988777764

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.81  E-value=0.06  Score=40.62  Aligned_cols=72  Identities=18%  Similarity=0.287  Sum_probs=56.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=.|.+.|.   ++..|++.+++|+.+|.+++.++.+.+.+...+  .++..+.+|+.+..            +.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (260)
T d1zema1           4 NGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDFG   81 (260)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            57788888877663   566667789999999999999998888887766  56889999998752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        82 ~iDilVnna   90 (260)
T d1zema1          82 KIDFLFNNA   90 (260)
T ss_dssp             CCCEEEECC
T ss_pred             CCCeehhhh
Confidence            578888764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.72  E-value=0.019  Score=38.66  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             CCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC------CCcceeecccCcccc
Q 047897           39 PGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF------PQFDLVVANIPYGIS  108 (232)
Q Consensus        39 ~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~------~~~D~Vi~n~p~~~~  108 (232)
                      ||.|.++..+++    .+.+|+.+|.|++.++.++.    .+    ...+.+|+.+.+.      .+.|.|++..|-...
T Consensus         6 iG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----~~----~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~   77 (134)
T d2hmva1           6 IGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----YA----THAVIANATEENELLSLGIRNFEYVIVAIGANIQ   77 (134)
T ss_dssp             ECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----TC----SEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred             ECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----hC----CcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence            355666666655    68999999999998887642    22    4567899977642      356777776654333

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=94.68  E-value=0.043  Score=44.21  Aligned_cols=51  Identities=16%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             CCCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCC
Q 047897           27 SINPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGF   77 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~   77 (232)
                      .+.+++.++|||+-.|..+..++.    ...+|+++|.++...+.+++++.....
T Consensus       209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            356788999999999988877665    246999999999999999999876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.52  E-value=0.073  Score=39.94  Aligned_cols=76  Identities=17%  Similarity=0.147  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .|+++|=-|++.|.   ++..+++.+++|+.+|.+++-++.+.+.+.......++.++.+|+.+..            +.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            46788888877663   5555666899999999999888877777654432357999999998753            23


Q ss_pred             CcceeecccCc
Q 047897           95 QFDLVVANIPY  105 (232)
Q Consensus        95 ~~D~Vi~n~p~  105 (232)
                      ..|++|.|-..
T Consensus        82 ~iDilVnnAg~   92 (254)
T d2gdza1          82 RLDILVNNAGV   92 (254)
T ss_dssp             CCCEEEECCCC
T ss_pred             CcCeecccccc
Confidence            57998887543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.47  E-value=0.11  Score=38.99  Aligned_cols=71  Identities=15%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             CCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCC
Q 047897           31 DDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQ   95 (232)
Q Consensus        31 ~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~   95 (232)
                      |+.+|=-|++.|.   ++..|++.+.+|+.++.+++.++.+.+.+...+  .++.++.+|+.+..            +..
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAG--VEADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4556777776653   555566689999999999998888888887766  46999999998753            235


Q ss_pred             cceeeccc
Q 047897           96 FDLVVANI  103 (232)
Q Consensus        96 ~D~Vi~n~  103 (232)
                      .|++|.|-
T Consensus        80 iDilVnnA   87 (257)
T d2rhca1          80 VDVLVNNA   87 (257)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEecc
Confidence            78888773

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.38  E-value=0.065  Score=40.33  Aligned_cols=72  Identities=14%  Similarity=0.231  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|.+.|.   ++..+++.+++|+.++.+++-++.+.+.+...+  .++.++.+|+.+..            +.
T Consensus        10 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g--~~~~~~~~Dvs~~~~~~~~~~~~~~~~g   87 (255)
T d1fmca_          10 DGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFAISKLG   87 (255)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57788877766553   445555688999999999998888888887765  56889999998752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|.
T Consensus        88 ~iDilvnnA   96 (255)
T d1fmca_          88 KVDILVNNA   96 (255)
T ss_dssp             SCCEEEECC
T ss_pred             CCCEeeeCC
Confidence            578888874

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.066  Score=37.48  Aligned_cols=50  Identities=14%  Similarity=0.237  Sum_probs=38.4

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhH-HHHHh-cCC-eEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLT-LKLLE-VSK-KVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t-~~l~~-~~~-~v~~vD~~~~~~~~a~~~   71 (232)
                      .++..+++++++|+=+|+|+..+. ..+++ .+. +|+++|.++.-++.+++.
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            456678889999999999876544 44444 555 899999999998888764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.16  E-value=0.052  Score=38.46  Aligned_cols=51  Identities=16%  Similarity=0.273  Sum_probs=39.9

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHH-HHHh-cC-CeEEEEEcCHHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTL-KLLE-VS-KKVHAIEIDERMVEILNRRA   72 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~-~l~~-~~-~~v~~vD~~~~~~~~a~~~~   72 (232)
                      +++..++++++.|+=+|||...+.. .+++ .+ .+|+++|.+++-++.|++.-
T Consensus        21 v~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~G   74 (176)
T d1d1ta2          21 AVKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVG   74 (176)
T ss_dssp             HHTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcC
Confidence            4566778999999999998665443 3444 44 79999999999999988874

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.12  E-value=0.13  Score=38.47  Aligned_cols=69  Identities=19%  Similarity=0.354  Sum_probs=52.2

Q ss_pred             EEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCcc
Q 047897           33 TVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQFD   97 (232)
Q Consensus        33 ~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~D   97 (232)
                      .+|=-|++.|.   ++..+++.+++|+.++.+++-++.+.+.+...+  .++..+.+|+.+..            +...|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            34666776653   555666689999999999999888888887766  56889999998752            33678


Q ss_pred             eeeccc
Q 047897           98 LVVANI  103 (232)
Q Consensus        98 ~Vi~n~  103 (232)
                      ++|.|-
T Consensus        81 ilVnnA   86 (255)
T d1gega_          81 VIVNNA   86 (255)
T ss_dssp             EEEECC
T ss_pred             EEEecc
Confidence            888774

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=94.09  E-value=0.087  Score=39.83  Aligned_cols=71  Identities=17%  Similarity=0.257  Sum_probs=53.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+.+|=.|++.|.   ++..+++.+.+|+.+|.+++-++.+.+.+...   +++.++.+|+.+..            +.
T Consensus         5 ~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~---~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   81 (268)
T d2bgka1           5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSP---DVISFVHCDVTKDEDVRNLVDTTIAKHG   81 (268)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCT---TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCC---CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            57788989987763   45556668999999999998888777766543   46888999997752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        82 ~iD~lVnnA   90 (268)
T d2bgka1          82 KLDIMFGNV   90 (268)
T ss_dssp             CCCEEEECC
T ss_pred             Ccceecccc
Confidence            578888764

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.07  E-value=0.093  Score=39.83  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=56.5

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=-|++.|.   ++..+++.+.+|+.+|.+++-++.+.+.+...+.. .++..+.+|+.+..            +
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   82 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF   82 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            46788888887763   55666668999999999999888888887766543 47899999998753            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|+++.|.
T Consensus        83 G~iDilVnnA   92 (274)
T d1xhla_          83 GKIDILVNNA   92 (274)
T ss_dssp             SCCCEEEECC
T ss_pred             CCceEEEeec
Confidence            3578888773

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.97  E-value=0.1  Score=39.57  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=56.6

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=.|++.|   .++..+++.+.+|+.++.+++-++.+.+.+...+.. .++..+.+|+.+..            +
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~   83 (272)
T d1xkqa_           4 SNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF   83 (272)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4678888887766   356666668999999999999998888888766542 47899999998753            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|.
T Consensus        84 g~iDilvnnA   93 (272)
T d1xkqa_          84 GKIDVLVNNA   93 (272)
T ss_dssp             SCCCEEEECC
T ss_pred             CCceEEEeCC
Confidence            3579888773

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.87  E-value=0.11  Score=32.93  Aligned_cols=75  Identities=17%  Similarity=0.238  Sum_probs=44.4

Q ss_pred             CCCEEEEEc---CCccHhHHHHHhcCCeEEEEEcCHH-HHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCc
Q 047897           30 PDDTVLEIG---PGTGNLTLKLLEVSKKVHAIEIDER-MVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPY  105 (232)
Q Consensus        30 ~~~~vLDiG---~G~G~~t~~l~~~~~~v~~vD~~~~-~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~  105 (232)
                      ...++.=||   +|.+.++..+.+.+..|+|.|.... ..+    .+...|    +.+..++..+. .+..|+||.....
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~----~L~~~G----i~v~~g~~~~~-i~~~d~vV~S~AI   77 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQ----RLAQAG----AKIYIGHAEEH-IEGASVVVVSSAI   77 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHH----HHHHTT----CEEEESCCGGG-GTTCSEEEECTTS
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhh----HHHHCC----CeEEECCcccc-CCCCCEEEECCCc
Confidence            445666665   3445677778889999999998632 222    223333    45555554332 3567888766554


Q ss_pred             ccchHHHH
Q 047897          106 GISSPLVA  113 (232)
Q Consensus       106 ~~~~~~l~  113 (232)
                      ....+.+.
T Consensus        78 ~~~npel~   85 (96)
T d1p3da1          78 KDDNPELV   85 (96)
T ss_dssp             CTTCHHHH
T ss_pred             CCCCHHHH
Confidence            44444443

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.75  E-value=0.12  Score=38.98  Aligned_cols=74  Identities=16%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCC-ccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFH-DRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~~~~~~~~D~~~~~------------~   93 (232)
                      +|+.+|=.|++.|.   ++..+++.+.+|+.++.+++.++.+.+.+...+.. .++.++.+|+.+..            +
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF   83 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46677878877663   55566668999999999999988888877665542 57999999997752            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|.
T Consensus        84 g~iDilvnnA   93 (264)
T d1spxa_          84 GKLDILVNNA   93 (264)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEeeccc
Confidence            3578888774

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=93.72  E-value=0.094  Score=36.54  Aligned_cols=50  Identities=24%  Similarity=0.293  Sum_probs=38.6

Q ss_pred             HHHhcCCCCCCEEEEEcCCc-cHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGT-GNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~-G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .++..++++|++||=+|+|. |.++..+++ .+.+++++|.+++-.+.+++.
T Consensus        22 al~~~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          22 PLRHWQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc
Confidence            34677889999999999864 456666666 688999999999877777654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=93.71  E-value=0.056  Score=37.94  Aligned_cols=50  Identities=18%  Similarity=0.271  Sum_probs=38.7

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHHH-Hh--cCCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLKL-LE--VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~l-~~--~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +.+..+++++++|+=+|+|.+.+.... +.  .+..|+++|.+++-++.+++.
T Consensus        20 ~~~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          20 AVNTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            346678899999999999996655443 33  457899999999988887764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.15  Score=37.95  Aligned_cols=68  Identities=24%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      .|+++|=.|++.|   .++..+++.+.+|+.+|.+++-++.+.+..      +++..+..|+.+..        ++..|+
T Consensus         6 ~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iDi   79 (244)
T d1pr9a_           6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVDL   79 (244)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCCE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCceE
Confidence            6789999998877   466667778999999999988776655443      35778889987642        346798


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      +|.|-
T Consensus        80 lVnnA   84 (244)
T d1pr9a_          80 LVNNA   84 (244)
T ss_dssp             EEECC
T ss_pred             EEecc
Confidence            88774

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.61  E-value=0.072  Score=37.40  Aligned_cols=49  Identities=16%  Similarity=0.271  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      +.+..+++++++||=.|+  |.|.++..+++ .+.+|++++.+++-.+.+++
T Consensus        20 l~~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          20 LIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             HHTTSCCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEEeccccccccccccccccCcccccccccccccccccc
Confidence            345667889999999996  45667777777 68899999988877777665

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.41  E-value=0.079  Score=37.34  Aligned_cols=50  Identities=10%  Similarity=0.119  Sum_probs=38.7

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHHH-HHh-c-CCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTLK-LLE-V-SKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~~-l~~-~-~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +++..+++++++||=+|||...+... +++ . ..+|+++|.+++-++.+++.
T Consensus        19 ~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          19 AVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             HHHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            45677889999999999987654443 444 3 46899999999999888764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=93.28  E-value=0.12  Score=35.31  Aligned_cols=66  Identities=14%  Similarity=0.077  Sum_probs=42.6

Q ss_pred             EEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecc
Q 047897           33 TVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVAN  102 (232)
Q Consensus        33 ~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n  102 (232)
                      .++=+|+  |.++..+++    .+..++.+|.|++......+....    .++.++.||+.+..      ....|.|++.
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~----~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLG----DNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHC----TTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhc----CCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            4555665  555555554    688999999998765443344332    35889999998753      2356777765


Q ss_pred             cC
Q 047897          103 IP  104 (232)
Q Consensus       103 ~p  104 (232)
                      .+
T Consensus        79 ~~   80 (153)
T d1id1a_          79 SD   80 (153)
T ss_dssp             SS
T ss_pred             cc
Confidence            43

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.14  Score=38.27  Aligned_cols=68  Identities=22%  Similarity=0.288  Sum_probs=50.9

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|   .++..+++.+.+|+.+|.+++.++.+.+..      ++..++.+|+.+..            +.
T Consensus         5 ~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~------~~~~~~~~Dvs~~~~v~~~~~~~~~~~g   78 (250)
T d1ydea1           5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQEL------PGAVFILCDVTQEDDVKTLVSETIRRFG   78 (250)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC------TTEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEccCCCHHHHHHHHHHHHHhcC
Confidence            5778898998776   356666668999999999998777665543      45788999997753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        79 ~iDilVnnA   87 (250)
T d1ydea1          79 RLDCVVNNA   87 (250)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEecc
Confidence            578888774

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.86  E-value=0.3  Score=36.51  Aligned_cols=60  Identities=17%  Similarity=0.147  Sum_probs=49.0

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +|+++|=.|++.|   .++..+++.+.+|+.++.+++-++.+.+.+...+  .++.++.+|+.+.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~   67 (258)
T d1ae1a_           5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSR   67 (258)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCH
Confidence            5788999998776   3566667789999999999988888888887766  4688899999775

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.75  E-value=0.18  Score=34.86  Aligned_cols=50  Identities=20%  Similarity=0.314  Sum_probs=38.3

Q ss_pred             HHHhcCCCCCCEEEEEcCCcc-HhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTG-NLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G-~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .++.++++++++||=+|+|.- .++..+++ .+.+|+++|.+++-++.+++.
T Consensus        19 al~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          19 GLKQTNARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhcc
Confidence            345678889999999998753 34445555 679999999999988887654

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.63  E-value=0.16  Score=37.93  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|.+.|.   ++..+++.+.+|+.++.+++.++.+.+.+..   .+++.++.+|+.+..            +.
T Consensus         5 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (251)
T d1zk4a1           5 DGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT---PDQIQFFQHDSSDEDGWTKLFDATEKAFG   81 (251)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC---CCcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46778888876662   5556666899999999999888877776643   257999999998753            23


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|-.
T Consensus        82 ~iDiLVnnAg   91 (251)
T d1zk4a1          82 PVSTLVNNAG   91 (251)
T ss_dssp             SCCEEEECCC
T ss_pred             CceEEEeccc
Confidence            5798887753

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=92.60  E-value=0.23  Score=35.24  Aligned_cols=82  Identities=7%  Similarity=-0.016  Sum_probs=55.4

Q ss_pred             HHHHHhcC-CCCCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC---
Q 047897           20 DSIVRKSS-INPDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE---   92 (232)
Q Consensus        20 ~~i~~~~~-~~~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~---   92 (232)
                      ..+.+... .-++.++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+.+...   .++.+...|..+..   
T Consensus        11 ~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~   87 (191)
T d1luaa1          11 ALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKR---FKVNVTAAETADDASRA   87 (191)
T ss_dssp             HHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHH---HTCCCEEEECCSHHHHH
T ss_pred             HHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhc---cchhhhhhhcccHHHHH
Confidence            34444443 2367899999976663   56666668999999999998887777776543   23555666665432   


Q ss_pred             --CCCcceeecccC
Q 047897           93 --FPQFDLVVANIP  104 (232)
Q Consensus        93 --~~~~D~Vi~n~p  104 (232)
                        ....|++|.|-+
T Consensus        88 ~~~~~iDilin~Ag  101 (191)
T d1luaa1          88 EAVKGAHFVFTAGA  101 (191)
T ss_dssp             HHTTTCSEEEECCC
T ss_pred             HHhcCcCeeeecCc
Confidence              246799988743

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.44  E-value=0.36  Score=36.02  Aligned_cols=72  Identities=15%  Similarity=0.171  Sum_probs=55.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|.   ++..+++.+++|+.+|.+++-++.+.+.+...+  .++.++.+|+.+..            +.
T Consensus         7 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           7 EGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            57788988887663   566666689999999999998888877777665  57889999997642            22


Q ss_pred             -Ccceeeccc
Q 047897           95 -QFDLVVANI  103 (232)
Q Consensus        95 -~~D~Vi~n~  103 (232)
                       ..|+++.|.
T Consensus        85 ~~idilvnnA   94 (259)
T d2ae2a_          85 GKLNILVNNA   94 (259)
T ss_dssp             TCCCEEEECC
T ss_pred             CCceEEEECC
Confidence             578888774

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.40  E-value=0.3  Score=36.13  Aligned_cols=68  Identities=21%  Similarity=0.197  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--------CCCcce
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--------FPQFDL   98 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--------~~~~D~   98 (232)
                      .|+++|=.|++.|.   ++..+++.+++|+.++.+++-++.+.+..      .++..+.+|+.+.+        +...|+
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iDi   77 (242)
T d1cyda_           4 SGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVDL   77 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence            57788888877763   55666668999999999987665554433      35778889987652        246798


Q ss_pred             eeccc
Q 047897           99 VVANI  103 (232)
Q Consensus        99 Vi~n~  103 (232)
                      +|.|-
T Consensus        78 lVnnA   82 (242)
T d1cyda_          78 LVNNA   82 (242)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            88774

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=92.04  E-value=0.31  Score=36.98  Aligned_cols=72  Identities=15%  Similarity=0.263  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHh-hcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAA-DSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=-|++.|   .++..|++.+.+|+.+|.+..-++.+.+.+. ..+  .++.++.+|+.+..            +
T Consensus        24 ~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          24 QGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTG--NKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHS--SCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcC--CceEEEEecccChHHHHHHhhhhhhhc
Confidence            4678999998776   4556666689999999999887766555443 334  56889999997753            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|+++.|.
T Consensus       102 g~iDilvnnA  111 (294)
T d1w6ua_         102 GHPNIVINNA  111 (294)
T ss_dssp             CSCSEEEECC
T ss_pred             cccchhhhhh
Confidence            3578888774

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=91.97  E-value=0.34  Score=35.82  Aligned_cols=69  Identities=16%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|.+.|   .++..+++.+.+|+.++.+++.++.+.+.+.     .+...+.+|+.+..            +.
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLG-----ANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-----GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhC-----CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            4677887787766   3555666689999999999988877666553     46788899997642            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        78 ~iDilVnnA   86 (243)
T d1q7ba_          78 EVDILVNNA   86 (243)
T ss_dssp             SCSEEEECC
T ss_pred             Ccceehhhh
Confidence            578888774

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=91.92  E-value=0.14  Score=31.86  Aligned_cols=67  Identities=16%  Similarity=0.147  Sum_probs=39.7

Q ss_pred             CCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEc-CCCCCCCCCcceeecccCcccchHHHHH
Q 047897           39 PGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISK-DALKTEFPQFDLVVANIPYGISSPLVAK  114 (232)
Q Consensus        39 ~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~-D~~~~~~~~~D~Vi~n~p~~~~~~~l~~  114 (232)
                      +|...++..+.+.+..|.|.|..+..  .. +.++..|    +.+..+ |...+  ...|+||.........+.+..
T Consensus        12 ~GMs~LA~~L~~~G~~VsGSD~~~~~--~t-~~L~~~G----i~i~~gh~~~~i--~~~d~vV~SsAI~~~npel~~   79 (89)
T d1j6ua1          12 IGMSAVALHEFSNGNDVYGSNIEETE--RT-AYLRKLG----IPIFVPHSADNW--YDPDLVIKTPAVRDDNPEIVR   79 (89)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCH--HH-HHHHHTT----CCEESSCCTTSC--CCCSEEEECTTCCTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCeEEEEeCCCCh--hH-HHHHHCC----CeEEeeeccccc--CCCCEEEEecCcCCCCHHHHH
Confidence            44556777777899999999988632  22 2355555    344443 22222  357888876555444444433

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=91.81  E-value=0.15  Score=35.71  Aligned_cols=51  Identities=12%  Similarity=0.199  Sum_probs=38.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHH-HHHh-c-CCeEEEEEcCHHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTL-KLLE-V-SKKVHAIEIDERMVEILNRRA   72 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~-~l~~-~-~~~v~~vD~~~~~~~~a~~~~   72 (232)
                      +.+..++++|++||=+|+|.+..+. .+++ . +.+|+++|.+++-.+.+++.-
T Consensus        20 l~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~G   73 (176)
T d2jhfa2          20 AVKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVG   73 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTT
T ss_pred             HHHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhC
Confidence            4566788999999999997655433 3333 3 479999999999988887763

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.73  E-value=0.3  Score=36.39  Aligned_cols=72  Identities=18%  Similarity=0.140  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHH-hhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRA-ADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~-~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=-|++.|.   ++..+++.+++|+.+|.+++-++.+.+.+ ...+  .++..+.+|+.+..            +
T Consensus         4 ~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           4 RGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            47788888987763   56666678999999999987766555444 3444  46888999998752            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|-
T Consensus        82 g~iDiLVnnA   91 (251)
T d1vl8a_          82 GKLDTVVNAA   91 (251)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEEEECC
Confidence            3579888774

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.59  E-value=0.27  Score=36.70  Aligned_cols=69  Identities=20%  Similarity=0.220  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=.|.+.|   .++..+++.+.+|+.+|.+++-++.+.+.+   +  .++.++.+|+.+..            +.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   78 (254)
T d1hdca_           4 SGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATAREL---G--DAARYQHLDVTIEEDWQRVVAYAREEFG   78 (254)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEcccCCHHHHHHHHHHHHHHcC
Confidence            5778898998877   366667778999999999987665544333   2  57899999998752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        79 ~iDilVnnA   87 (254)
T d1hdca_          79 SVDGLVNNA   87 (254)
T ss_dssp             CCCEEEECC
T ss_pred             CccEEEecC
Confidence            578888774

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=91.52  E-value=0.31  Score=36.52  Aligned_cols=72  Identities=15%  Similarity=0.234  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCH-HHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDE-RMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~-~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=.|++.|   .++..|++.+.+|+.++.+. +.++.+.+.+...+  .++..+.+|+.+..            +
T Consensus         6 ~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           6 EGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVG--GEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            5778888887776   35566666899999999874 56666666666655  46889999998752            1


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|.
T Consensus        84 G~iDiLVnnA   93 (261)
T d1geea_          84 GKLDVMINNA   93 (261)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCEeeccc
Confidence            2579888874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=91.21  E-value=0.3  Score=33.62  Aligned_cols=76  Identities=14%  Similarity=0.187  Sum_probs=46.5

Q ss_pred             EEEEEcCCc--cHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccchH
Q 047897           33 TVLEIGPGT--GNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGISSP  110 (232)
Q Consensus        33 ~vLDiG~G~--G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~~~  110 (232)
                      +|.=||+|.  +.++..+.+.+.+|+++|.+++.++.+++.    +.   +.....+..  .....|+|+...|......
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~----~~---~~~~~~~~~--~~~~~DiIilavp~~~~~~   72 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVER----QL---VDEAGQDLS--LLQTAKIIFLCTPIQLILP   72 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----TS---CSEEESCGG--GGTTCSEEEECSCHHHHHH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHh----hc---cceeeeecc--cccccccccccCcHhhhhh
Confidence            355567762  235556666889999999999887776553    21   111222221  1246799998888666666


Q ss_pred             HHHHHhc
Q 047897          111 LVAKLVY  117 (232)
Q Consensus       111 ~l~~~~~  117 (232)
                      .+..+..
T Consensus        73 vl~~l~~   79 (165)
T d2f1ka2          73 TLEKLIP   79 (165)
T ss_dssp             HHHHHGG
T ss_pred             hhhhhhh
Confidence            6665544

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.15  E-value=0.4  Score=33.06  Aligned_cols=51  Identities=31%  Similarity=0.612  Sum_probs=38.9

Q ss_pred             HHHHhcCCCCCCEEEEEcC-C-ccHhHHHHHh-cC-CeEEEEEcCHHHHHHHHHH
Q 047897           21 SIVRKSSINPDDTVLEIGP-G-TGNLTLKLLE-VS-KKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~-G-~G~~t~~l~~-~~-~~v~~vD~~~~~~~~a~~~   71 (232)
                      ..++..++.++++||=+|| | .|.++..+++ .+ ..|+++|.+++-.+.+++.
T Consensus        18 ~al~~~~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          18 RAVRKASLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             HHHHHTTCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            3456778899999999997 3 4455665655 44 7999999999888888764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=91.14  E-value=0.2  Score=35.07  Aligned_cols=68  Identities=16%  Similarity=0.294  Sum_probs=47.3

Q ss_pred             CCCEEEEEcCCccHhHH-HHHh-cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC--CCCcceeecc
Q 047897           30 PDDTVLEIGPGTGNLTL-KLLE-VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE--FPQFDLVVAN  102 (232)
Q Consensus        30 ~~~~vLDiG~G~G~~t~-~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~--~~~~D~Vi~n  102 (232)
                      +..+|+=||+|.-.+.. ..+. .+..|+++|.+++.++..+....     .+++....+-..+.  ....|+||+-
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~a  102 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGA  102 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEEC
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEe
Confidence            35689999999865443 3344 78999999999999988877764     34555555443332  1267999874

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.09  E-value=0.38  Score=33.48  Aligned_cols=51  Identities=16%  Similarity=0.279  Sum_probs=37.4

Q ss_pred             HHHHhcCCCCCCEEEEEcCCccH-hHHHHHh-c-CCeEEEEEcCHHHHHHHHHH
Q 047897           21 SIVRKSSINPDDTVLEIGPGTGN-LTLKLLE-V-SKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~G~G~-~t~~l~~-~-~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .+.+.++++++++||=+|||.-. ++..+++ . ...++++|.++.-++.+++.
T Consensus        19 a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~   72 (174)
T d1f8fa2          19 ACINALKVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL   72 (174)
T ss_dssp             HHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             HHHHhhCCCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc
Confidence            34566788999999999997644 4444444 3 45678899999988888764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.05  E-value=0.29  Score=34.09  Aligned_cols=49  Identities=12%  Similarity=0.142  Sum_probs=39.0

Q ss_pred             HHhcCCCCCCEEEEEcCC--ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGPG--TGNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~G--~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .+..+++++++||=.|+|  .|..+..+++ .+.+|++++.+++-.+.+++.
T Consensus        21 ~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          21 RKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             HTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH
T ss_pred             HHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc
Confidence            345678899999988665  4567777777 789999999999988888764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.86  E-value=0.42  Score=32.75  Aligned_cols=49  Identities=16%  Similarity=0.259  Sum_probs=37.5

Q ss_pred             HHHhcCCCCCCEEEEEcCCccHhHH-HHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTGNLTL-KLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G~~t~-~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      .+...+++++++||=.|+|+-.+.. .+++ .+.+|++++.+++-++.+++
T Consensus        19 al~~~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          19 ALKVTGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             HHHHHTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh
Confidence            3456678899999999998765443 3344 67899999999998887766

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.82  E-value=0.57  Score=35.70  Aligned_cols=74  Identities=18%  Similarity=0.177  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcC---CCccEEEEEcCCCCCC-----------
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSG---FHDRLNVISKDALKTE-----------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~---~~~~~~~~~~D~~~~~-----------   92 (232)
                      +|.++|=.|++.|.   ++..|++.+++|+.++.+++-++.+.+.+....   ...++..+.+|+.+..           
T Consensus        11 ~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   90 (297)
T d1yxma1          11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLD   90 (297)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHHH
Confidence            68889988877763   455566689999999999888776666554321   1247889999998753           


Q ss_pred             -CCCcceeeccc
Q 047897           93 -FPQFDLVVANI  103 (232)
Q Consensus        93 -~~~~D~Vi~n~  103 (232)
                       +...|++|.|.
T Consensus        91 ~~G~iDiLVnnA  102 (297)
T d1yxma1          91 TFGKINFLVNNG  102 (297)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCeEEEEeec
Confidence             23578888774

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.64  E-value=0.55  Score=34.98  Aligned_cols=73  Identities=18%  Similarity=0.196  Sum_probs=55.8

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C-
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F-   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~-   93 (232)
                      +|+++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+.+...+  .++..+.+|+.+..            + 
T Consensus         7 kgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           7 KAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMFG   84 (259)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            57788888887763   666666789999999999988888777776655  46899999997642            1 


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ...|+++.|..
T Consensus        85 g~idilvnnAG   95 (259)
T d1xq1a_          85 GKLDILINNLG   95 (259)
T ss_dssp             TCCSEEEEECC
T ss_pred             CCccccccccc
Confidence            25788888754

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.58  E-value=0.54  Score=35.38  Aligned_cols=69  Identities=23%  Similarity=0.324  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|.   ++..|++.+++|+.+|.+++-++.+.+..   +  .++..+.+|+.+..            +.
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDH---G--DNVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence            57788888877663   55556668999999999988776555443   2  56889999998753            22


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|+++.|.
T Consensus        79 ~idilvnnA   87 (276)
T d1bdba_          79 KIDTLIPNA   87 (276)
T ss_dssp             CCCEEECCC
T ss_pred             Ccccccccc
Confidence            578888763

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.52  E-value=0.32  Score=36.24  Aligned_cols=70  Identities=17%  Similarity=0.247  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=.|++.|   .++..+++.+.+|+.+|.+++.++.+.+.+   +  .++..+.+|+.+..            +.
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~---~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEI---G--PAACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHH---C--TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4678888887776   356666668999999999987766555544   3  56889999998753            13


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|++|.|.-
T Consensus        79 ~iDilVnnAg   88 (256)
T d1k2wa_          79 SIDILVNNAA   88 (256)
T ss_dssp             CCCEEEECCC
T ss_pred             CccEEEeecc
Confidence            5798888753

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=90.46  E-value=0.27  Score=36.65  Aligned_cols=69  Identities=22%  Similarity=0.298  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=.|++.|   .++..+++.+.+|+..|.+++.++.+.+.+   +  .+..++.+|+.+..            +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   79 (253)
T d1hxha_           5 QGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAEL---G--ERSMFVRHDVSSEADWTLVMAAVQRRLG   79 (253)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHH---C--TTEEEECCCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---C--CCeEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            5778888887666   355566668999999999998777665554   2  46788899987752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        80 ~iDilVnnA   88 (253)
T d1hxha_          80 TLNVLVNNA   88 (253)
T ss_dssp             SCCEEEECC
T ss_pred             CCCeEEecc
Confidence            578888874

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=90.23  E-value=0.39  Score=35.55  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+.+|=.|.+.|   .++..|++.+++|+.+|.++.  +.+.+..+..+  .++..+.+|+.+..            +.
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~--~~~~~~~~~~g--~~~~~~~~Dvs~~~~v~~~~~~~~~~~G   79 (247)
T d2ew8a1           4 KDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA--PEAEAAIRNLG--RRVLTVKCDVSQPGDVEAFGKQVISTFG   79 (247)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC--HHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch--HHHHHHHHHcC--CcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            4678888887666   356666668999999998764  23334444444  57899999998753            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        80 ~iDilVnnA   88 (247)
T d2ew8a1          80 RCDILVNNA   88 (247)
T ss_dssp             CCCEEEECC
T ss_pred             CCCEEEECC
Confidence            579888874

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.70  E-value=0.82  Score=33.69  Aligned_cols=70  Identities=17%  Similarity=0.179  Sum_probs=52.3

Q ss_pred             CCCEEEEEcCCcc---HhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTG---NLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G---~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|   .++..+++.+.+|+.+|.+++-++.+.+.+.     +++.++.+|+.+..            +.
T Consensus         5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   79 (244)
T d1nffa_           5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELA-----DAARYVHLDVTQPAQWKAAVDTAVTAFG   79 (244)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTG-----GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----CcceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            5778888898777   3666677789999999999987776665543     56889999997753            12


Q ss_pred             CcceeecccC
Q 047897           95 QFDLVVANIP  104 (232)
Q Consensus        95 ~~D~Vi~n~p  104 (232)
                      ..|+++.|..
T Consensus        80 ~idilinnAG   89 (244)
T d1nffa_          80 GLHVLVNNAG   89 (244)
T ss_dssp             CCCEEEECCC
T ss_pred             CCeEEEECCc
Confidence            5788887743

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.67  E-value=0.41  Score=35.33  Aligned_cols=67  Identities=18%  Similarity=0.172  Sum_probs=48.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +++++|=-|++.|.   ++..+++.+.+|+.+|.+++-++.+.+..       +...+.+|+.+..            +.
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV-------GAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT-------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc-------CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            46788888887763   55566668999999999988776654432       3667889987752            12


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus        77 ~iDilVnnA   85 (242)
T d1ulsa_          77 RLDGVVHYA   85 (242)
T ss_dssp             SCCEEEECC
T ss_pred             CceEEEECC
Confidence            578888763

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.66  E-value=0.27  Score=34.00  Aligned_cols=77  Identities=19%  Similarity=0.191  Sum_probs=46.1

Q ss_pred             EEEEEcCCc-cH-hHHHHHhcC--CeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCCCCcceeecccCcccc
Q 047897           33 TVLEIGPGT-GN-LTLKLLEVS--KKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEFPQFDLVVANIPYGIS  108 (232)
Q Consensus        33 ~vLDiG~G~-G~-~t~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~D~Vi~n~p~~~~  108 (232)
                      +|+=||||. |. ++..+.+.+  .+|+|+|.+++.++.+++.-       .+.-...+.........|+|+...|-...
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~-------~~~~~~~~~~~~~~~~~dlIila~p~~~~   75 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG-------IIDEGTTSIAKVEDFSPDFVMLSSPVRTF   75 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT-------SCSEEESCGGGGGGTCCSEEEECSCHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh-------cchhhhhhhhhhhccccccccccCCchhh
Confidence            466688875 32 444554443  58999999999998877652       12222233333333356888877775555


Q ss_pred             hHHHHHHh
Q 047897          109 SPLVAKLV  116 (232)
Q Consensus       109 ~~~l~~~~  116 (232)
                      .+.+..+.
T Consensus        76 ~~vl~~l~   83 (171)
T d2g5ca2          76 REIAKKLS   83 (171)
T ss_dssp             HHHHHHHH
T ss_pred             hhhhhhhh
Confidence            55554443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.62  E-value=0.55  Score=35.19  Aligned_cols=71  Identities=18%  Similarity=0.131  Sum_probs=51.3

Q ss_pred             CCEE-EEEcCCccH---hHHHHHhc-CCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           31 DDTV-LEIGPGTGN---LTLKLLEV-SKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        31 ~~~v-LDiG~G~G~---~t~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      |.+| |=-|++.|.   ++..|++. +.+|+..+.+++-++.+.+.+...+  .++.++.+|+.+..            +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~   79 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY   79 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence            4455 445655553   44455554 7899999999999988888887766  46899999998753            2


Q ss_pred             CCcceeeccc
Q 047897           94 PQFDLVVANI  103 (232)
Q Consensus        94 ~~~D~Vi~n~  103 (232)
                      ...|++|.|-
T Consensus        80 g~iDiLVnNA   89 (275)
T d1wmaa1          80 GGLDVLVNNA   89 (275)
T ss_dssp             SSEEEEEECC
T ss_pred             CCcEEEEEcC
Confidence            3579999873

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=89.46  E-value=0.24  Score=32.73  Aligned_cols=58  Identities=21%  Similarity=0.240  Sum_probs=42.3

Q ss_pred             CCccHhHHHHHh--cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------CCCcceeecccC
Q 047897           39 PGTGNLTLKLLE--VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------FPQFDLVVANIP  104 (232)
Q Consensus        39 ~G~G~~t~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------~~~~D~Vi~n~p  104 (232)
                      ||.|..+..+++  .+..++.+|.++...+.++.        ..+.++.||+.+..      ..+.+.+++..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            677888888888  56789999999998776542        24778999997642      335666776543

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=89.39  E-value=0.71  Score=33.91  Aligned_cols=68  Identities=18%  Similarity=0.290  Sum_probs=50.3

Q ss_pred             EEEEcCCccH---hHHHHHhcCCe-------EEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----------
Q 047897           34 VLEIGPGTGN---LTLKLLEVSKK-------VHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----------   92 (232)
Q Consensus        34 vLDiG~G~G~---~t~~l~~~~~~-------v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----------   92 (232)
                      ||=-|++.|.   ++..|++.+++       |+.++.+++-++.+.+.+...|  .++.++.+|+.+..           
T Consensus         4 vlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           4 LLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEG--ALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTT--CEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             EEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence            5566777663   45556666665       8999999998888888777666  57889999998753           


Q ss_pred             -CCCcceeeccc
Q 047897           93 -FPQFDLVVANI  103 (232)
Q Consensus        93 -~~~~D~Vi~n~  103 (232)
                       +...|+++.|-
T Consensus        82 ~~g~iDilvnnA   93 (240)
T d2bd0a1          82 RYGHIDCLVNNA   93 (240)
T ss_dssp             HTSCCSEEEECC
T ss_pred             HcCCcceeeccc
Confidence             23579888774

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.92  E-value=0.85  Score=33.79  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCCcc---HhHHHHHhcCCeEEEE-EcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------
Q 047897           29 NPDDTVLEIGPGTG---NLTLKLLEVSKKVHAI-EIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        29 ~~~~~vLDiG~G~G---~~t~~l~~~~~~v~~v-D~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      -.|+++|=.|.+.|   .++..|++.+++|+.. ..++...+.+.+.+...|  .++..+.+|+.+..            
T Consensus         4 L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~   81 (259)
T d1ja9a_           4 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH   81 (259)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence            35788997776655   4556666688899865 567777888888888776  46899999998642            


Q ss_pred             CCCcceeecccC
Q 047897           93 FPQFDLVVANIP  104 (232)
Q Consensus        93 ~~~~D~Vi~n~p  104 (232)
                      +...|++|.|..
T Consensus        82 ~g~idilinnag   93 (259)
T d1ja9a_          82 FGGLDFVMSNSG   93 (259)
T ss_dssp             HSCEEEEECCCC
T ss_pred             cCCCcEEEeccc
Confidence            125788888753

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=88.34  E-value=0.38  Score=35.90  Aligned_cols=73  Identities=15%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHH-HHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILN-RRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~-~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=-|.+.|.   ++..|++.+++|+.++.+++-++.+. +.....+  .++..+.+|+.+..            +
T Consensus         8 ~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFG--VKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             TTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHT--CCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            46788888876663   55666668999999999876554443 3334444  46889999998753            2


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ...|++|.|..
T Consensus        86 g~iDilVnnAg   96 (260)
T d1h5qa_          86 GPISGLIANAG   96 (260)
T ss_dssp             CSEEEEEECCC
T ss_pred             CCCcEeccccc
Confidence            35788888753

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.22  E-value=0.5  Score=35.16  Aligned_cols=72  Identities=17%  Similarity=0.193  Sum_probs=50.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC-HHHHHHHHHHHh-hcCCCccEEEEEcCCCCCC------------
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID-ERMVEILNRRAA-DSGFHDRLNVISKDALKTE------------   92 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~-~~~~~~a~~~~~-~~~~~~~~~~~~~D~~~~~------------   92 (232)
                      +|+++|=-|++.|.   ++..|++.+.+|+.++.+ ++.++.+.+.+. ..+  .++.++.+|+.+..            
T Consensus         3 ~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (260)
T d1x1ta1           3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHG--VKVLYDGADLSKGEAVRGLVDNAVRQ   80 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHT--SCEEEECCCTTSHHHHHHHHHHHHHH
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            56778877777663   555666689999999986 566666555543 334  46889999998753            


Q ss_pred             CCCcceeeccc
Q 047897           93 FPQFDLVVANI  103 (232)
Q Consensus        93 ~~~~D~Vi~n~  103 (232)
                      +...|++|.|-
T Consensus        81 ~G~iDiLVnnA   91 (260)
T d1x1ta1          81 MGRIDILVNNA   91 (260)
T ss_dssp             HSCCSEEEECC
T ss_pred             hCCCcEEEeec
Confidence            23578888774

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=87.87  E-value=0.52  Score=32.57  Aligned_cols=50  Identities=10%  Similarity=0.160  Sum_probs=37.0

Q ss_pred             HHHhcCCCCCCEEEEEcCCcc-HhHHHHHh-cC-CeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGTG-NLTLKLLE-VS-KKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~G-~~t~~l~~-~~-~~v~~vD~~~~~~~~a~~~   71 (232)
                      +.+..++++|++||=.|||.. .++..+++ .+ ..|+++|.+++-.+.+++.
T Consensus        20 l~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          20 AVNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             HHTTTCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             HHHhhCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            345678899999999998732 34444555 34 7899999999988887765

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.70  E-value=1.2  Score=33.25  Aligned_cols=73  Identities=19%  Similarity=0.230  Sum_probs=54.2

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcC-HHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------C
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEID-ERMVEILNRRAADSGFHDRLNVISKDALKTE------------F   93 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~-~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~   93 (232)
                      +|+++|=.|++.|.   ++..+++.+.+|+..+.+ ++.++.+.+.+...+  .++.++.+|..+..            +
T Consensus        17 ~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~   94 (272)
T d1g0oa_          17 EGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF   94 (272)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence            47788888887773   666777789999999987 566777777676665  46899999998742            1


Q ss_pred             CCcceeecccC
Q 047897           94 PQFDLVVANIP  104 (232)
Q Consensus        94 ~~~D~Vi~n~p  104 (232)
                      ...|+++.|..
T Consensus        95 g~idilV~nag  105 (272)
T d1g0oa_          95 GKLDIVCSNSG  105 (272)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCccccccc
Confidence            25688887753

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.61  E-value=1.3  Score=32.93  Aligned_cols=61  Identities=11%  Similarity=0.166  Sum_probs=46.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      +|.++|=.|++.|.   ++..+++.+.+|+.++.+++-++.+.+......- ........|..+.
T Consensus        13 ~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~-~~~~~~~~d~~~~   76 (269)
T d1xu9a_          13 QGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGA-ASAHYIAGTMEDM   76 (269)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTC-SEEEEEECCTTCH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhc-ccchhhhhhhhhH
Confidence            67889999988873   6666777899999999999888877666544332 4677888887654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=87.60  E-value=0.44  Score=33.08  Aligned_cols=50  Identities=14%  Similarity=0.248  Sum_probs=37.7

Q ss_pred             HHHHhcCCCCCCEEEEEcC-C-ccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           21 SIVRKSSINPDDTVLEIGP-G-TGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        21 ~i~~~~~~~~~~~vLDiG~-G-~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      ..++..+++++++||=.|. | .|.++..+++ .+.+|++++.+++-.+.+++
T Consensus        18 ~al~~~~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~   70 (171)
T d1iz0a2          18 LALKRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA   70 (171)
T ss_dssp             HHHHHTTCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH
T ss_pred             HHHHHhCCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc
Confidence            3456678899999998884 3 3566666776 68899999998887776665

>d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: LPG1296-like
domain: Uncharacterized protein LPG1296
species: Legionella pneumophila [TaxId: 446]

Probab=87.40  E-value=0.12  Score=39.16  Aligned_cols=74  Identities=14%  Similarity=0.177  Sum_probs=60.8

Q ss_pred             EEEcCCccHhHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC-----C-CCCcceeecccCcccc
Q 047897           35 LEIGPGTGNLTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT-----E-FPQFDLVVANIPYGIS  108 (232)
Q Consensus        35 LDiG~G~G~~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~-----~-~~~~D~Vi~n~p~~~~  108 (232)
                      +..-||+-.++..+++...+++.+|+.+.-.+.+++++...   .++.+.+.|..+.     | .+.=-+|+.++||...
T Consensus        87 l~~YPGSP~ia~~llR~~Drl~l~ELHp~e~~~L~~~~~~~---~~~~v~~~DG~~~l~allPP~~rRgLVLIDPpYE~k  163 (271)
T d2oo3a1          87 LSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLLKLPHFN---KKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERK  163 (271)
T ss_dssp             CCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHTTSCCTT---SCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCST
T ss_pred             cCcCCCCHHHHHHhCCCCCceEEeecCHHHHHHHHHHhccC---CCceEEcCchHHHHHhhCCCCCCceEEEecCCcCCH
Confidence            46899999999999999999999999999999988877542   6899999998763     2 2233589999999988


Q ss_pred             hHH
Q 047897          109 SPL  111 (232)
Q Consensus       109 ~~~  111 (232)
                      ++.
T Consensus       164 ~ey  166 (271)
T d2oo3a1         164 EEY  166 (271)
T ss_dssp             THH
T ss_pred             HHH
Confidence            654

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=86.15  E-value=0.87  Score=33.62  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=47.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      +|+++|=-|++.|.   ++..|++.+++|+..|.+++..+.+++.        +..++.+|+.+..            +.
T Consensus         4 ~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~--------~~~~~~~Dv~~~~~v~~~~~~~~~~~G   75 (248)
T d2d1ya1           4 AGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGKEVAEAI--------GGAFFQVDLEDERERVRFVEEAAYALG   75 (248)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHHHHHHHH--------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc--------CCeEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            67888888876663   5556666899999999998876654432        2457889998752            23


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|-
T Consensus        76 ~iDiLVnnA   84 (248)
T d2d1ya1          76 RVDVLVNNA   84 (248)
T ss_dssp             CCCEEEECC
T ss_pred             CCCeEEEeC
Confidence            578888763

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=85.47  E-value=1.5  Score=32.05  Aligned_cols=68  Identities=22%  Similarity=0.270  Sum_probs=46.7

Q ss_pred             EEEEcCCccH---hHHHHHhcCCeEEEEEc-CHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CCCcc
Q 047897           34 VLEIGPGTGN---LTLKLLEVSKKVHAIEI-DERMVEILNRRAADSGFHDRLNVISKDALKTE------------FPQFD   97 (232)
Q Consensus        34 vLDiG~G~G~---~t~~l~~~~~~v~~vD~-~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~~~D   97 (232)
                      +|=-|++.|.   ++..+++.+.+|+..+. +++.++.+.+.+...+  .++.++.+|+.+..            +...|
T Consensus         4 ~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           4 VVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYG--GQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHT--CEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            4445555442   44445557899988765 6777887777777666  57889999998752            23679


Q ss_pred             eeeccc
Q 047897           98 LVVANI  103 (232)
Q Consensus        98 ~Vi~n~  103 (232)
                      ++|.|-
T Consensus        82 iLVnnA   87 (244)
T d1edoa_          82 VVVNNA   87 (244)
T ss_dssp             EEEECC
T ss_pred             cccccc
Confidence            888774

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.34  E-value=1.9  Score=31.66  Aligned_cols=62  Identities=13%  Similarity=0.064  Sum_probs=44.3

Q ss_pred             CCCEEEEEcCCccH---hHHHHHh---cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLE---VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT   91 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~   91 (232)
                      .|+.+|=-|++.|.   ++..|++   .+.+|+.++.+++.++.+.+.+...+...++.++.+|+.+.
T Consensus         5 ~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~   72 (259)
T d1oaaa_           5 GCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTE   72 (259)
T ss_dssp             BSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCH
Confidence            45555655766653   4445554   47899999999998888877776554435789999999774

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.25  E-value=0.98  Score=30.78  Aligned_cols=81  Identities=21%  Similarity=0.244  Sum_probs=46.5

Q ss_pred             CCEEEEEcCCc-cH-hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC-----CCCcceeeccc
Q 047897           31 DDTVLEIGPGT-GN-LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE-----FPQFDLVVANI  103 (232)
Q Consensus        31 ~~~vLDiG~G~-G~-~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~D~Vi~n~  103 (232)
                      +.+||=||+|- |. ++..|++.+.+|+.+|.+.+-++...+.+      +.......+.....     ....|.+++..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~------~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~   75 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGV------QHSTPISLDVNDDAALDAEVAKHDLVISLI   75 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTC------TTEEEEECCTTCHHHHHHHHTTSSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcc------cccccccccccchhhhHhhhhccceeEeec
Confidence            35677798843 22 33334446789999999998766554433      23444443332211     12567787777


Q ss_pred             CcccchHHHHHHhc
Q 047897          104 PYGISSPLVAKLVY  117 (232)
Q Consensus       104 p~~~~~~~l~~~~~  117 (232)
                      |+............
T Consensus        76 ~~~~~~~~~~~~~~   89 (182)
T d1e5qa1          76 PYTFHATVIKSAIR   89 (182)
T ss_dssp             CGGGHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHh
Confidence            77666555444433

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=85.18  E-value=1.1  Score=31.10  Aligned_cols=50  Identities=14%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             HHHhcCCCCCCEEEEEcCCc--cHhHHHHHh-cCCeEEEEEcCHHHHHHHHHH
Q 047897           22 IVRKSSINPDDTVLEIGPGT--GNLTLKLLE-VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        22 i~~~~~~~~~~~vLDiG~G~--G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      +.+..++++|++||=.|+|.  |..+..+++ .+++|+++..+++-.+.+++.
T Consensus        21 l~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~   73 (182)
T d1v3va2          21 LLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQI   73 (182)
T ss_dssp             HHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT
T ss_pred             HHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhh
Confidence            34567788999999777754  456666666 789999999998877766654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.95  E-value=1.2  Score=30.59  Aligned_cols=45  Identities=22%  Similarity=0.377  Sum_probs=34.0

Q ss_pred             CCCCCCEEEEEcCCccHhH-HHHHh--cCCeEEEEEcCHHHHHHHHHH
Q 047897           27 SINPDDTVLEIGPGTGNLT-LKLLE--VSKKVHAIEIDERMVEILNRR   71 (232)
Q Consensus        27 ~~~~~~~vLDiG~G~G~~t-~~l~~--~~~~v~~vD~~~~~~~~a~~~   71 (232)
                      .+++++.||=+|+|...+. ..+++  ....|+++|.+++-.+.+++.
T Consensus        29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            3578999999999876544 44554  346889999999888877764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.74  E-value=1.9  Score=31.49  Aligned_cols=69  Identities=14%  Similarity=0.142  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCC------------CC
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTE------------FP   94 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~------------~~   94 (232)
                      .|+++|=.|++.|.   ++..|++.+.+|+..+.+.+-++...+   ..+  .++.++++|+.+..            +.
T Consensus         4 ~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~g   78 (241)
T d2a4ka1           4 SGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVA---ALE--AEAIAVVADVSDPKAVEAVFAEALEEFG   78 (241)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---TCC--SSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---HcC--CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            57788888988763   566666689999999999876654333   333  57889999997653            13


Q ss_pred             Ccceeeccc
Q 047897           95 QFDLVVANI  103 (232)
Q Consensus        95 ~~D~Vi~n~  103 (232)
                      ..|++|.|.
T Consensus        79 ~iDiLinnA   87 (241)
T d2a4ka1          79 RLHGVAHFA   87 (241)
T ss_dssp             CCCEEEEGG
T ss_pred             CccEecccc
Confidence            578888774

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=83.13  E-value=2.6  Score=30.45  Aligned_cols=63  Identities=21%  Similarity=0.232  Sum_probs=43.4

Q ss_pred             CCCEEEEEcCCccH---hHHHHHhcCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCC------CCCCcceee
Q 047897           30 PDDTVLEIGPGTGN---LTLKLLEVSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKT------EFPQFDLVV  100 (232)
Q Consensus        30 ~~~~vLDiG~G~G~---~t~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~------~~~~~D~Vi  100 (232)
                      +++++|=.|.+.|.   ++..+++.+++|+.+|.+++.++.       .    ..+++.+|+.+.      .+...|++|
T Consensus         3 kgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~-------~----~~~~~~~Dv~~~~~~~~~~~g~iD~lV   71 (234)
T d1o5ia_           3 RDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKR-------S----GHRYVVCDLRKDLDLLFEKVKEVDILV   71 (234)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHH-------T----CSEEEECCTTTCHHHHHHHSCCCSEEE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHh-------c----CCcEEEcchHHHHHHHHHHhCCCcEEE
Confidence            46788888977663   455566689999999999865432       1    234677887653      123679888


Q ss_pred             ccc
Q 047897          101 ANI  103 (232)
Q Consensus       101 ~n~  103 (232)
                      .|.
T Consensus        72 nnA   74 (234)
T d1o5ia_          72 LNA   74 (234)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            874

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=82.95  E-value=4.7  Score=27.89  Aligned_cols=69  Identities=12%  Similarity=0.265  Sum_probs=45.1

Q ss_pred             CCCCEEEEEcCCccHhHHHHH--hcCCeEEEEEcCH-------------------HHHHHHHHHHhhcCCCccEEEEEcC
Q 047897           29 NPDDTVLEIGPGTGNLTLKLL--EVSKKVHAIEIDE-------------------RMVEILNRRAADSGFHDRLNVISKD   87 (232)
Q Consensus        29 ~~~~~vLDiG~G~G~~t~~l~--~~~~~v~~vD~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~D   87 (232)
                      ..+.+|+=||.|+..++.+..  +.+.+|+.+|.++                   +.++...+.++..+    +++..+.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~g----V~i~l~~  116 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTG----VTLKLNH  116 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHT----CEEEESC
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCC----eEEEeCC
Confidence            356799999999999877754  3789999999875                   23455555555544    5555543


Q ss_pred             CCCC-CCCCcceeec
Q 047897           88 ALKT-EFPQFDLVVA  101 (232)
Q Consensus        88 ~~~~-~~~~~D~Vi~  101 (232)
                      -.+. ....+|.|+.
T Consensus       117 ~Vt~~~~~~~d~vil  131 (179)
T d1ps9a3         117 TVTADQLQAFDETIL  131 (179)
T ss_dssp             CCCSSSSCCSSEEEE
T ss_pred             EEcccccccceeEEE
Confidence            3222 2336786654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=82.77  E-value=4.4  Score=30.71  Aligned_cols=73  Identities=18%  Similarity=0.104  Sum_probs=47.7

Q ss_pred             CCCCCEEEEEcCCccHhHHHHHh----cCCeEEEEEcCHHHHHHHHHHHhhcCCCccEEEEEcCCCCCCC-----CCcce
Q 047897           28 INPDDTVLEIGPGTGNLTLKLLE----VSKKVHAIEIDERMVEILNRRAADSGFHDRLNVISKDALKTEF-----PQFDL   98 (232)
Q Consensus        28 ~~~~~~vLDiG~G~G~~t~~l~~----~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-----~~~D~   98 (232)
                      +.+|.+||=.| |+|.++..+++    .+.+|+|+..+..-.+................++.+|+.+...     ...|.
T Consensus         8 ~~~gk~VlVTG-~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~   86 (342)
T d1y1pa1           8 LPEGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCcCEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchh
Confidence            45788898887 45887776655    6899999988876666555544333332455678888876532     24566


Q ss_pred             eec
Q 047897           99 VVA  101 (232)
Q Consensus        99 Vi~  101 (232)
                      |+.
T Consensus        87 v~~   89 (342)
T d1y1pa1          87 VAH   89 (342)
T ss_dssp             EEE
T ss_pred             hhh
Confidence            654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.14  E-value=0.82  Score=31.67  Aligned_cols=48  Identities=17%  Similarity=0.336  Sum_probs=35.6

Q ss_pred             HHhcCCCCCCEEEEEcC--CccHhHHHHHh-cCCeEEEEEcCHHHHHHHHH
Q 047897           23 VRKSSINPDDTVLEIGP--GTGNLTLKLLE-VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        23 ~~~~~~~~~~~vLDiG~--G~G~~t~~l~~-~~~~v~~vD~~~~~~~~a~~   70 (232)
                      .+...++++++||=.|.  |.|.++..+++ .+.+++++..+++-.+.+++
T Consensus        18 ~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~   68 (183)
T d1pqwa_          18 CEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR   68 (183)
T ss_dssp             HTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT
T ss_pred             HHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc
Confidence            45667889999998773  45566666666 68999999988877666654

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=80.18  E-value=0.9  Score=31.99  Aligned_cols=35  Identities=23%  Similarity=0.343  Sum_probs=24.1

Q ss_pred             EEEEcCCccHhHHHHHh---cCCeEEEEEcCHHHHHHHHH
Q 047897           34 VLEIGPGTGNLTLKLLE---VSKKVHAIEIDERMVEILNR   70 (232)
Q Consensus        34 vLDiG~G~G~~t~~l~~---~~~~v~~vD~~~~~~~~a~~   70 (232)
                      |-=||  .|+++..++.   .+.+|+|+|+|+..++..+.
T Consensus         3 I~ViG--lG~vGl~~a~~~a~g~~V~g~Din~~~v~~l~~   40 (196)
T d1dlja2           3 IAVAG--SGYVGLSLGVLLSLQNEVTIVDILPSKVDKINN   40 (196)
T ss_dssp             EEEEC--CSHHHHHHHHHHTTTSEEEEECSCHHHHHHHHT
T ss_pred             EEEEC--CChhHHHHHHHHHCCCcEEEEECCHHHHHHHhh
Confidence            44454  5555554433   68899999999998876653