List of proteins mapped to COG cluster: COG1958

**List of proteins associated with COG cluster: COG1958 LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]**
Protein ID Link to complete analysis report	Lenth Link to complete analysis report	Similarity with COG COG1958	All predicted COG clusters
1g008994m	547	hhsearch probability: 93.98 Identity: 18% subject length: 79 Length of aligned reigon: 65 Coverage over query: 11-83 Coverage over subject: 13-78	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g008892m	549	hhsearch probability: 94.15 Identity: 18% subject length: 79 Length of aligned reigon: 65 Coverage over query: 11-83 Coverage over subject: 13-78	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g045896m	520	hhsearch probability: 96.20 Identity: 21% subject length: 79 Length of aligned reigon: 71 Coverage over query: 64-145 Coverage over subject: 6-78	COG5180, PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification] COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g038314m	565	hhsearch probability: 96.55 Identity: 18% subject length: 79 Length of aligned reigon: 71 Coverage over query: 22-98 Coverage over subject: 6-78	COG5180, PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification] COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g034407m	95	hhsearch probability: 99.41 Identity: 38% subject length: 79 Length of aligned reigon: 48 Coverage over query: 1-48 Coverage over subject: 31-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g035338m	67	hhsearch probability: 99.65 Identity: 35% subject length: 79 Length of aligned reigon: 60 Coverage over query: 5-64 Coverage over subject: 11-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g034890m	80	hhsearch probability: 99.85 Identity: 42% subject length: 79 Length of aligned reigon: 67 Coverage over query: 6-72 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g034463m	94	hhsearch probability: 99.64 Identity: 24% subject length: 79 Length of aligned reigon: 59 Coverage over query: 21-91 Coverage over subject: 21-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034895m	80	hhsearch probability: 99.85 Identity: 42% subject length: 79 Length of aligned reigon: 67 Coverage over query: 6-72 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g032889m	131	hhsearch probability: 99.77 Identity: 42% subject length: 79 Length of aligned reigon: 71 Coverage over query: 39-114 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033737m	112	hhsearch probability: 99.73 Identity: 37% subject length: 79 Length of aligned reigon: 68 Coverage over query: 39-110 Coverage over subject: 8-75	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g035130m	72	hhsearch probability: 99.80 Identity: 29% subject length: 79 Length of aligned reigon: 58 Coverage over query: 2-69 Coverage over subject: 22-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033668m	114	hhsearch probability: 99.80 Identity: 33% subject length: 79 Length of aligned reigon: 69 Coverage over query: 2-70 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g023166m	286	hhsearch probability: 99.76 Identity: 35% subject length: 79 Length of aligned reigon: 71 Coverage over query: 6-86 Coverage over subject: 9-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g033530m	117	hhsearch probability: 99.80 Identity: 35% subject length: 79 Length of aligned reigon: 68 Coverage over query: 2-69 Coverage over subject: 7-78	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g045257m	107	hhsearch probability: 99.71 Identity: 40% subject length: 79 Length of aligned reigon: 60 Coverage over query: 1-60 Coverage over subject: 19-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g023163m	286	hhsearch probability: 99.76 Identity: 35% subject length: 79 Length of aligned reigon: 71 Coverage over query: 6-86 Coverage over subject: 9-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g033079m	128	hhsearch probability: 99.80 Identity: 38% subject length: 79 Length of aligned reigon: 72 Coverage over query: 10-81 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g034064m	104	hhsearch probability: 99.83 Identity: 24% subject length: 79 Length of aligned reigon: 74 Coverage over query: 18-101 Coverage over subject: 6-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g011128m	493	hhsearch probability: 94.00 Identity: 18% subject length: 79 Length of aligned reigon: 60 Coverage over query: 18-86 Coverage over subject: 13-75	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g007191m	613	hhsearch probability: 92.16 Identity: 18% subject length: 79 Length of aligned reigon: 60 Coverage over query: 18-86 Coverage over subject: 13-75	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g034340m	97	hhsearch probability: 99.86 Identity: 40% subject length: 79 Length of aligned reigon: 75 Coverage over query: 9-92 Coverage over subject: 5-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034273m	99	hhsearch probability: 99.68 Identity: 30% subject length: 79 Length of aligned reigon: 67 Coverage over query: 20-96 Coverage over subject: 5-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g034343m	97	hhsearch probability: 99.86 Identity: 40% subject length: 79 Length of aligned reigon: 75 Coverage over query: 9-92 Coverage over subject: 5-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034067m	104	hhsearch probability: 99.83 Identity: 24% subject length: 79 Length of aligned reigon: 74 Coverage over query: 18-101 Coverage over subject: 6-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033666m	114	hhsearch probability: 99.76 Identity: 30% subject length: 79 Length of aligned reigon: 73 Coverage over query: 22-98 Coverage over subject: 5-78	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g034066m	104	hhsearch probability: 99.83 Identity: 24% subject length: 79 Length of aligned reigon: 74 Coverage over query: 18-101 Coverage over subject: 6-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034096m	104	hhsearch probability: 99.83 Identity: 24% subject length: 79 Length of aligned reigon: 74 Coverage over query: 18-101 Coverage over subject: 6-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g005730m	680	hhsearch probability: 90.91 Identity: 18% subject length: 79 Length of aligned reigon: 61 Coverage over query: 18-86 Coverage over subject: 13-75	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g034299m	98	hhsearch probability: 99.83 Identity: 31% subject length: 79 Length of aligned reigon: 72 Coverage over query: 2-74 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g030131m	182	hhsearch probability: 95.26 Identity: 18% subject length: 79 Length of aligned reigon: 57 Coverage over query: 11-67 Coverage over subject: 13-77	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription]
1g034180m	102	hhsearch probability: 99.58 Identity: 45% subject length: 79 Length of aligned reigon: 47 Coverage over query: 37-83 Coverage over subject: 6-52	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g032108m	147	hhsearch probability: 99.77 Identity: 37% subject length: 79 Length of aligned reigon: 73 Coverage over query: 9-81 Coverage over subject: 6-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033952m	107	hhsearch probability: 99.85 Identity: 31% subject length: 79 Length of aligned reigon: 75 Coverage over query: 18-104 Coverage over subject: 5-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034651m	88	hhsearch probability: 99.87 Identity: 34% subject length: 79 Length of aligned reigon: 73 Coverage over query: 9-85 Coverage over subject: 4-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034490m	93	hhsearch probability: 99.87 Identity: 30% subject length: 79 Length of aligned reigon: 70 Coverage over query: 2-71 Coverage over subject: 7-78	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g033972m	107	hhsearch probability: 99.85 Identity: 31% subject length: 79 Length of aligned reigon: 75 Coverage over query: 18-104 Coverage over subject: 5-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g032863m	132	hhsearch probability: 99.82 Identity: 28% subject length: 79 Length of aligned reigon: 75 Coverage over query: 1-75 Coverage over subject: 1-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g045948m	184	hhsearch probability: 99.75 Identity: 34% subject length: 79 Length of aligned reigon: 73 Coverage over query: 9-85 Coverage over subject: 4-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g031941m	150	hhsearch probability: 99.82 Identity: 40% subject length: 79 Length of aligned reigon: 70 Coverage over query: 2-71 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033960m	107	hhsearch probability: 99.85 Identity: 31% subject length: 79 Length of aligned reigon: 75 Coverage over query: 18-104 Coverage over subject: 5-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g031975m	150	hhsearch probability: 99.83 Identity: 41% subject length: 79 Length of aligned reigon: 70 Coverage over query: 2-71 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g041342m	87	hhsearch probability: 99.90 Identity: 34% subject length: 79 Length of aligned reigon: 74 Coverage over query: 6-80 Coverage over subject: 4-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only] COG0779, Uncharacterized protein conserved in bacteria [Function unknown]
1g031950m	150	hhsearch probability: 99.83 Identity: 41% subject length: 79 Length of aligned reigon: 70 Coverage over query: 2-71 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033930m	108	hhsearch probability: 99.85 Identity: 30% subject length: 79 Length of aligned reigon: 76 Coverage over query: 18-105 Coverage over subject: 4-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g031921m	150	hhsearch probability: 99.83 Identity: 41% subject length: 79 Length of aligned reigon: 70 Coverage over query: 2-71 Coverage over subject: 7-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033937m	108	hhsearch probability: 99.85 Identity: 30% subject length: 79 Length of aligned reigon: 76 Coverage over query: 18-105 Coverage over subject: 4-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g033904m	109	hhsearch probability: 99.85 Identity: 28% subject length: 79 Length of aligned reigon: 76 Coverage over query: 19-106 Coverage over subject: 4-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034752m	85	hhsearch probability: 99.78 Identity: 33% subject length: 79 Length of aligned reigon: 67 Coverage over query: 8-84 Coverage over subject: 4-72	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034564m	91	hhsearch probability: 99.89 Identity: 37% subject length: 79 Length of aligned reigon: 73 Coverage over query: 10-82 Coverage over subject: 3-79	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]
1g034947m	78	hhsearch probability: 99.81 Identity: 30% subject length: 79 Length of aligned reigon: 67 Coverage over query: 8-78 Coverage over subject: 3-72	COG1958, LSM1 Small nuclear ribonucleoprotein (snRNP) homolog [Transcription] COG1923, Hfq Uncharacterized host factor I protein [General function prediction only]