Psyllid ID: psy10094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------
Protein Sequence
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGVSRNKK
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHHHHHcccccHHcccccccccHHHHHHHcccccccccHHcHHHHHcccccccccccccEEEEEEEEEEEccHHHHHHcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEcccEEEccEEEEccccEEEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccEEEEEEEHHcccHHHHHHHccccccEEEEEEEcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHccccEEEEcHHHHHEEEEEEEcccEEEEEEEccccccccccccHHcc
Coil and Loop (DISEMBL)
mfdhipvgvgskgiipmNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRmlnadpskvsmrakkrglpqlgtlgagnhyaEIQIVDEIYDKWAaskmgiedVGQVCVMIhsgsrgfghqvatgkcekitcmaYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKqfnttpddldmhVIYDVSHNIAKTEEHMVDGKQKTLLVHrkvsepshpgvsrnkk
Flexible Loop (DISEMBL)
mfdhipvgvgskgiipmNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGlpqlgtlgagnhyAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLlvhrkvsepshpgvsrnkk
Low Complexity Region (SEG)
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGVSRNKK
Disordered region (IsUnstruct)
*******GVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGR*******************QLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAM*********RQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKT*******************************
Disordered Region (DISOPRED)
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHP*VS****
Disordered Region (DISEMBL)
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKV*************
Disordered Region (DISPRO)
*FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGVSR**K
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPGVSRNKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	257	2.2.26 [Sep-21-2011]
Q7Q412	506	tRNA-splicing ligase RtcB	yes	N/A	0.918	0.466	0.826	1e-123
B0WCT9	506	tRNA-splicing ligase RtcB	N/A	N/A	0.918	0.466	0.826	1e-122
B0XKF3	502	tRNA-splicing ligase RtcB	N/A	N/A	0.918	0.470	0.826	1e-122
Q17FP1	506	tRNA-splicing ligase RtcB	N/A	N/A	0.918	0.466	0.838	1e-118
Q9VIW7	506	tRNA-splicing ligase RtcB	yes	N/A	0.918	0.466	0.846	1e-118
Q5E9T9	505	tRNA-splicing ligase RtcB	yes	N/A	0.929	0.473	0.774	1e-114
A9CB42	505	tRNA-splicing ligase RtcB	N/A	N/A	0.929	0.473	0.774	1e-114
Q4R6X4	505	tRNA-splicing ligase RtcB	N/A	N/A	0.929	0.473	0.774	1e-114
Q561P3	505	tRNA-splicing ligase RtcB	yes	N/A	0.918	0.467	0.779	1e-114
Q19PY3	505	tRNA-splicing ligase RtcB	yes	N/A	0.929	0.473	0.774	1e-114

>sp|Q7Q412|RTCB_ANOGA tRNA-splicing ligase RtcB homolog OS=Anopheles gambiae GN=AGAP008147 PE=3 SV=2

 Score =  441 bits (1133), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/254 (82%), Positives = 226/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS+RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMV+G+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.
Anopheles gambiae (taxid: 7165)
EC: 6EC: .EC: 5EC: .EC: 1EC: .EC: 3

>sp|B0WCT9|RTCB1_CULQU tRNA-splicing ligase RtcB homolog 1 OS=Culex quinquefasciatus GN=CPIJ004874 PE=3 SV=1

 Score =  439 bits (1128), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Culex quinquefasciatus (taxid: 7176)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|B0XKF3|RTCB2_CULQU tRNA-splicing ligase RtcB homolog 2 OS=Culex quinquefasciatus GN=CPIJ019543 PE=3 SV=1

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Culex quinquefasciatus (taxid: 7176)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q17FP1|RTCB_AEDAE tRNA-splicing ligase RtcB homolog OS=Aedes aegypti GN=AAEL003336 PE=3 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 213/254 (83%), Positives = 226/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKFAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+MAA
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRALPPHHP 387

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Aedes aegypti (taxid: 7159)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q9VIW7|RTCB_DROME tRNA-splicing ligase RtcB homolog OS=Drosophila melanogaster GN=CG9987 PE=1 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 215/254 (84%), Positives = 224/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct: 148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q5E9T9|RTCB_BOVIN tRNA-splicing ligase RtcB homolog OS=Bos taurus PE=2 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query: 241 HRKVSE----PSHPGVS 253
           HRK S     P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|A9CB42|RTCB_PAPAN tRNA-splicing ligase RtcB homolog OS=Papio anubis PE=3 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query: 241 HRKVSE----PSHPGVS 253
           HRK S     P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Papio anubis (taxid: 9555)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q4R6X4|RTCB_MACFA tRNA-splicing ligase RtcB homolog OS=Macaca fascicularis GN=QtsA-16939 PE=2 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query: 241 HRKVSE----PSHPGVS 253
           HRK S     P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q561P3|RTCB_XENTR tRNA-splicing ligase RtcB homolog OS=Xenopus tropicalis PE=2 SV=1

 Score =  411 bits (1057), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/254 (77%), Positives = 215/254 (84%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct: 147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS +AKKRGLPQLGTLGAGNHYAE+Q+VD+IYD++AA KMGI+  GQVCVMIHSGSRG G
Sbjct: 207 VSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV MEKAMKRD I  NDRQLACARI+S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAA 312

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           A N+AWVNRSSMTFL RQAF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLV 372

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 373 HRKGSTRAFPPHHP 386

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

>sp|Q19PY3|RTCB_PIG tRNA-splicing ligase RtcB homolog OS=Sus scrofa PE=2 SV=1

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 217/257 (84%), Gaps = 18/257 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct: 147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct: 207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct: 267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct: 313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query: 241 HRKVSE----PSHPGVS 253
           HRK S     P HP ++
Sbjct: 373 HRKGSTRAFPPHHPLIA 389

Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as a RNA ligase with broad substrate specificity, and may function toward other RNAs.

Sus scrofa (taxid: 9823)

EC: 6

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
242022637	510	conserved hypothetical protein [Pediculu	0.918	0.462	0.874	1e-127
332375715	506	unknown [Dendroctonus ponderosae]	0.918	0.466	0.870	1e-125
307204121	506	UPF0027 protein C22orf28-like protein [H	0.918	0.466	0.866	1e-125
91093759	506	PREDICTED: similar to GA22169-PA [Tribol	0.918	0.466	0.862	1e-124
48112647	506	PREDICTED: tRNA-splicing ligase RtcB hom	0.918	0.466	0.862	1e-123
156544293	506	PREDICTED: tRNA-splicing ligase RtcB hom	0.918	0.466	0.858	1e-123
380030337	506	PREDICTED: LOW QUALITY PROTEIN: tRNA-spl	0.918	0.466	0.858	1e-123
312374780	506	hypothetical protein AND_15504 [Anophele	0.918	0.466	0.830	1e-122
58389845	506	AGAP008147-PA [Anopheles gambiae str. PE	0.918	0.466	0.826	1e-121
170037353	506	conserved hypothetical protein [Culex qu	0.918	0.466	0.826	1e-121

>gi|242022637|ref|XP_002431746.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517061|gb|EEB19008.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  459 bits (1182), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 222/254 (87%), Positives = 228/254 (89%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 152 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 211

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAASKMGIE  GQ+CVMIHSGSRGFG
Sbjct: 212 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAASKMGIESKGQICVMIHSGSRGFG 271

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRDNIETNDRQLACARINS EGQDYLKSMAA
Sbjct: 272 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACARINSPEGQDYLKSMAA 317

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFLCRQAFAKQFN+ PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 318 AANFAWVNRSSMTFLCRQAFAKQFNSCPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLV 377

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 378 HRKGSTRAFPPHHP 391

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375715|gb|AEE62998.1| unknown [Dendroctonus ponderosae]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 221/254 (87%), Positives = 227/254 (89%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQVCVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQVCVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRD IETNDRQLACARINS EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKSMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQF+TTPDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFDTTPDDLDMHVIYDVSHNIAKVEEHIVDGKQKTLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204121|gb|EFN82990.1| UPF0027 protein C22orf28-like protein [Harpegnathos saltator]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/254 (86%), Positives = 227/254 (89%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKGIIPMN+RDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 MFDHIPVGVGSKGIIPMNSRDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFN++PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNSSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093759|ref|XP_969671.1| PREDICTED: similar to GA22169-PA [Tribolium castaneum] gi|270012976|gb|EFA09424.1| hypothetical protein TcasGA2_TC010635 [Tribolium castaneum]

 Score =  450 bits (1157), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/254 (86%), Positives = 226/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA+DLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAKDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQVCVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQVCVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRD IETNDRQLACARI+S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARISSQEGQDYLKSMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFN  PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNMAPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|48112647|ref|XP_393151.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Apis mellifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 219/254 (86%), Positives = 224/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQF  +PDDLDMHVIYDVSHNIAK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIEEHMVDGKQKTLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544293|ref|XP_001607419.1| PREDICTED: tRNA-splicing ligase RtcB homolog [Nasonia vitripennis]

 Score =  446 bits (1148), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/254 (85%), Positives = 225/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRML ADPSK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIY+K AASKMGIE+ GQVCVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYNKSAASKMGIEEKGQVCVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRDNIE NDRQLACA INS+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIEVNDRQLACAHINSQEGQDYLKSMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFN +PDDLDMHVIYDVSHN+AK EEHMVDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFNMSPDDLDMHVIYDVSHNVAKVEEHMVDGKQKTLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030337|ref|XP_003698805.1| PREDICTED: LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog [Apis florea]

 Score =  445 bits (1145), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 218/254 (85%), Positives = 224/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNAD SK
Sbjct: 148 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADSSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKWAA KMGIE+ GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWAACKMGIEEKGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALVQMEKAMKRDNIETNDRQLACA I S+EGQDYLKSMAA
Sbjct: 268 HQVAT--------------DALVQMEKAMKRDNIETNDRQLACAHIKSQEGQDYLKSMAA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQF  +PDDLDMHVIYDVSHNIAK EEH+VDGKQKTLLV
Sbjct: 314 AANFAWVNRSSMTFLSRQAFAKQFRLSPDDLDMHVIYDVSHNIAKIEEHIVDGKQKTLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312374780|gb|EFR22263.1| hypothetical protein AND_15504 [Anopheles darlingi]

 Score =  442 bits (1136), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/254 (83%), Positives = 226/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS+RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMVDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVDGRPKQLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58389845|ref|XP_317316.2| AGAP008147-PA [Anopheles gambiae str. PEST] gi|74802307|sp|Q7Q412.2|RTCB_ANOGA RecName: Full=tRNA-splicing ligase RtcB homolog gi|55237536|gb|EAA12412.2| AGAP008147-PA [Anopheles gambiae str. PEST]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/254 (82%), Positives = 226/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS+RAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSLRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSPEGQNYLKAMSA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEHMV+G+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKMEEHMVNGRPKQLLV 373

Query: 241 HRKVS----EPSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037353|ref|XP_001846523.1| conserved hypothetical protein [Culex quinquefasciatus] gi|327488449|sp|B0WCT9.1|RTCB1_CULQU RecName: Full=tRNA-splicing ligase RtcB homolog 1 gi|167880432|gb|EDS43815.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  439 bits (1128), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/254 (82%), Positives = 225/254 (88%), Gaps = 18/254 (7%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +FDHIPVGVGSKGIIPMNA DLEEALEMGMDWSLREGY+WAEDKEHCEEYGRML ADPSK
Sbjct: 148 LFDHIPVGVGSKGIIPMNAHDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLTADPSK 207

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VSMRAKKRGLPQLGTLGAGNHYAEIQ+V+EIYDK+AASKMGIE++GQ+CVMIHSGSRGFG
Sbjct: 208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDKYAASKMGIEELGQICVMIHSGSRGFG 267

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVAT              DALV+MEKAMKRD IETNDRQLACARINS EGQ+YLK+M+A
Sbjct: 268 HQVAT--------------DALVEMEKAMKRDKIETNDRQLACARINSVEGQNYLKAMSA 313

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AANFAWVNRSSMTFL RQAFAKQFNTTPDDLDMHVIYDVSHN+AK EEH+VDG+ K LLV
Sbjct: 314 AANFAWVNRSSMTFLTRQAFAKQFNTTPDDLDMHVIYDVSHNVAKIEEHIVDGRPKQLLV 373

Query: 241 HRKVSE----PSHP 250
           HRK S     P HP
Sbjct: 374 HRKGSTRAFPPHHP 387

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	257
FB|FBgn0032781	506	CG9987 [Drosophila melanogaste	0.918	0.466	0.846	5.3e-111
UNIPROTKB|Q561P3	505	Q561P3 "tRNA-splicing ligase R	0.918	0.467	0.779	7.7e-103
UNIPROTKB|F1NYI3	507	C1H22orf28 "Uncharacterized pr	0.918	0.465	0.787	1.3e-102
ZFIN|ZDB-GENE-040426-2096	505	zgc:76871 "zgc:76871" [Danio r	0.918	0.467	0.783	1.6e-102
UNIPROTKB|Q5E9T9	505	Q5E9T9 "tRNA-splicing ligase R	0.918	0.467	0.783	2e-102
UNIPROTKB|Q9Y3I0	505	C22orf28 "tRNA-splicing ligase	0.918	0.467	0.783	2e-102
UNIPROTKB|F2Z5V0	505	C22orf28 "Uncharacterized prot	0.918	0.467	0.783	2e-102
UNIPROTKB|Q19PY3	505	Q19PY3 "tRNA-splicing ligase R	0.918	0.467	0.783	2e-102
UNIPROTKB|A9CB42	505	A9CB42 "tRNA-splicing ligase R	0.918	0.467	0.783	2e-102
UNIPROTKB|Q4R6X4	505	QtsA-16939 "tRNA-splicing liga	0.918	0.467	0.783	2e-102

FB|FBgn0032781 CG9987 [Drosophila melanogaster (taxid:7227)]

 Score = 1096 (390.9 bits), Expect = 5.3e-111, P = 5.3e-111
 Identities = 215/254 (84%), Positives = 224/254 (88%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             +FDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGY+WAEDKEHCEEYGRMLNADP+K
Sbjct:   148 LFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYVWAEDKEHCEEYGRMLNADPAK 207

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VSMRAKKRGLPQLGTLGAGNHYAEIQ+VDEIYDKW+ASKMGIE+ GQV VMIHSGSRGFG
Sbjct:   208 VSMRAKKRGLPQLGTLGAGNHYAEIQVVDEIYDKWSASKMGIEEKGQVVVMIHSGSRGFG 267

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALVQMEKAMKRD IETNDRQLACARINS EGQDYLK+MAA
Sbjct:   268 HQVAT--------------DALVQMEKAMKRDKIETNDRQLACARINSVEGQDYLKAMAA 313

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             AANFAWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E HMVDGK++ LLV
Sbjct:   314 AANFAWVNRSSMTFLTRQAFAKMFNTTPDDLDMHVIYDVSHNIAKVENHMVDGKERKLLV 373

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   374 HRKGSTRAFPPHHP 387

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|Q561P3 Q561P3 "tRNA-splicing ligase RtcB homolog" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 198/254 (77%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADPSK
Sbjct:   147 MFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPSK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS +AKKRGLPQLGTLGAGNHYAE+Q+VD+IYD++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSSKAKKRGLPQLGTLGAGNHYAEVQVVDDIYDEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI+S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKITVNDRQLACARISSAEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAF+K FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK+KTLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKEKTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0003972 "RNA ligase (ATP) activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0072669 "tRNA-splicing ligase complex" evidence=ISS

UNIPROTKB|F1NYI3 C1H22orf28 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 1017 (363.1 bits), Expect = 1.3e-102, P = 1.3e-102
 Identities = 200/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   149 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 208

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VD+IY+++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   209 VSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNEYAARKMGIDHKGQVCVMIHSGSRGLG 268

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   269 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASVEGQDYLKGMAA 314

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLDMHVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   315 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQHVVDGKERTLLV 374

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   375 HRKGSTRAFPPHHP 388

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0003972 "RNA ligase (ATP) activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0017166 "vinculin binding" evidence=IEA

GO:0072669 "tRNA-splicing ligase complex" evidence=IEA

ZFIN|ZDB-GENE-040426-2096 zgc:76871 "zgc:76871" [Danio rerio (taxid:7955)]

 Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
 Identities = 199/254 (78%), Positives = 214/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             +FDHIPVGVGSKG+IPM A+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 LFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS +AKKRGLPQLGTLGAGNHYAEIQ+VDEIY+ +AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S+EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDRITVNDRQLACARITSEEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAF+K F+TTPDDLDMHVIYDVSHNIAK EEHMVDG+QKTLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFSKVFSTTPDDLDMHVIYDVSHNIAKVEEHMVDGRQKTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0003972 "RNA ligase (ATP) activity" evidence=IEA;ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0072669 "tRNA-splicing ligase complex" evidence=ISS

GO:0016874 "ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

UNIPROTKB|Q5E9T9 Q5E9T9 "tRNA-splicing ligase RtcB homolog" [Bos taurus (taxid:9913)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 199/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0001890 "placenta development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0072669 "tRNA-splicing ligase complex" evidence=ISS

GO:0003972 "RNA ligase (ATP) activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0017166 "vinculin binding" evidence=IEA

UNIPROTKB|Q9Y3I0 C22orf28 "tRNA-splicing ligase RtcB homolog" [Homo sapiens (taxid:9606)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 199/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0017166 "vinculin binding" evidence=IPI

GO:0007160 "cell-matrix adhesion" evidence=NAS

GO:0034446 "substrate adhesion-dependent cell spreading" evidence=NAS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IDA

GO:0003972 "RNA ligase (ATP) activity" evidence=IDA

GO:0072669 "tRNA-splicing ligase complex" evidence=IDA

UNIPROTKB|F2Z5V0 C22orf28 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 199/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0072669 "tRNA-splicing ligase complex" evidence=IEA

GO:0017166 "vinculin binding" evidence=IEA

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003972 "RNA ligase (ATP) activity" evidence=IEA

GO:0001890 "placenta development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|Q19PY3 Q19PY3 "tRNA-splicing ligase RtcB homolog" [Sus scrofa (taxid:9823)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 199/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0072669 "tRNA-splicing ligase complex" evidence=ISS

GO:0003972 "RNA ligase (ATP) activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|A9CB42 A9CB42 "tRNA-splicing ligase RtcB homolog" [Papio anubis (taxid:9555)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 199/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0003972 "RNA ligase (ATP) activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0072669 "tRNA-splicing ligase complex" evidence=ISS

UNIPROTKB|Q4R6X4 QtsA-16939 "tRNA-splicing ligase RtcB homolog" [Macaca fascicularis (taxid:9541)]

 Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
 Identities = 199/254 (78%), Positives = 215/254 (84%)

Query:     1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
             MFDHIPVGVGSKG+IPMNA+DLEEALEMG+DWSLREGY WAEDKEHCEEYGRML ADP+K
Sbjct:   147 MFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSLREGYAWAEDKEHCEEYGRMLQADPNK 206

Query:    61 VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
             VS RAKKRGLPQLGTLGAGNHYAEIQ+VDEI++++AA KMGI+  GQVCVMIHSGSRG G
Sbjct:   207 VSARAKKRGLPQLGTLGAGNHYAEIQVVDEIFNEYAAKKMGIDHKGQVCVMIHSGSRGLG 266

Query:   121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
             HQVAT              DALV MEKAMKRD I  NDRQLACARI S EGQDYLK MAA
Sbjct:   267 HQVAT--------------DALVAMEKAMKRDKIIVNDRQLACARIASPEGQDYLKGMAA 312

Query:   181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
             A N+AWVNRSSMTFL RQAFAK FNTTPDDLD+HVIYDVSHNIAK E+H+VDGK++TLLV
Sbjct:   313 AGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQHVVDGKERTLLV 372

Query:   241 HRKVSE----PSHP 250
             HRK S     P HP
Sbjct:   373 HRKGSTRAFPPHHP 386

GO:0003972 "RNA ligase (ATP) activity" evidence=ISS

GO:0006388 "tRNA splicing, via endonucleolytic cleavage and ligation" evidence=ISS

GO:0072669 "tRNA-splicing ligase complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6AYT3	RTCB_RAT	6, ., 5, ., 1, ., 3	0.7743	0.9299	0.4732	yes	N/A
C3YN79	RTCB_BRAFL	6, ., 5, ., 1, ., 3	0.7559	0.9182	0.4654	yes	N/A
Q8IIU6	RTCB_PLAF7	6, ., 5, ., 1, ., 3	0.6328	0.9260	0.4703	yes	N/A
Q4N1R8	RTCB_THEPA	6, ., 5, ., 1, ., 3	0.6070	0.9299	0.4714	yes	N/A
Q54Y09	RTCB_DICDI	6, ., 5, ., 1, ., 3	0.7283	0.9182	0.4645	yes	N/A
Q99LF4	RTCB_MOUSE	6, ., 5, ., 1, ., 3	0.7743	0.9299	0.4732	yes	N/A
Q6NZS4	RTCB_DANRE	6, ., 5, ., 1, ., 3	0.7834	0.9182	0.4673	yes	N/A
Q5E9T9	RTCB_BOVIN	6, ., 5, ., 1, ., 3	0.7743	0.9299	0.4732	yes	N/A
Q7Q412	RTCB_ANOGA	6, ., 5, ., 1, ., 3	0.8267	0.9182	0.4664	yes	N/A
Q9Y3I0	RTCB_HUMAN	6, ., 5, ., 1, ., 3	0.7743	0.9299	0.4732	yes	N/A
A4S3S3	RTCB_OSTLU	6, ., 5, ., 1, ., 3	0.7401	0.9182	0.4591	yes	N/A
C1E9Y5	RTCB_MICSR	6, ., 5, ., 1, ., 3	0.7440	0.9182	0.4600	yes	N/A
Q9VIW7	RTCB_DROME	6, ., 5, ., 1, ., 3	0.8464	0.9182	0.4664	yes	N/A
Q561P3	RTCB_XENTR	6, ., 5, ., 1, ., 3	0.7795	0.9182	0.4673	yes	N/A
B3L4K9	RTCB_PLAKH	6, ., 5, ., 1, ., 3	0.6289	0.9260	0.4657	yes	N/A
Q00ZY2	RTCB_OSTTA	6, ., 5, ., 1, ., 3	0.7480	0.9182	0.4582	yes	N/A
Q19PY3	RTCB_PIG	6, ., 5, ., 1, ., 3	0.7743	0.9299	0.4732	yes	N/A
P90838	RTCB_CAEEL	6, ., 5, ., 1, ., 3	0.696	0.9182	0.4673	yes	N/A
Q4U923	RTCB_THEAN	6, ., 5, ., 1, ., 3	0.5924	0.9299	0.4640	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	257
pfam01139	419	pfam01139, UPF0027, Uncharacterized protein family	6e-93
COG1690	432	COG1690, RtcB, Uncharacterized conserved protein [	4e-83
PRK09588	376	PRK09588, PRK09588, hypothetical protein; Reviewed	9e-17
TIGR03073	356	TIGR03073, release_rtcB, release factor H-coupled	1e-11

>gnl|CDD|216324 pfam01139, UPF0027, Uncharacterized protein family UPF0027

 Score =  279 bits (716), Expect = 6e-93
 Identities = 119/251 (47%), Positives = 157/251 (62%), Gaps = 32/251 (12%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +F  +P GVGS G I ++  +L+E LE G +W++ EGY W E             ADP K
Sbjct: 94  IFRAVPSGVGSGGKIRLSKSELDEVLEEGAEWAVEEGYGWDEG------------ADPEK 141

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS +AK+RGLPQLGTLG GNH+ EIQ+VDEI+D+ AA   G+++ GQV +MIHSGSRG G
Sbjct: 142 VSEKAKERGLPQLGTLGGGNHFIEIQVVDEIFDEEAAKAFGLDEKGQVWLMIHSGSRGLG 201

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQ+AT              D L    KAMK+  I+  DRQLA   ++S+EGQDYL +MAA
Sbjct: 202 HQIAT--------------DYLRLARKAMKKYGIKLPDRQLAYLPLDSEEGQDYLAAMAA 247

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AAN+AW NR  +    R+AF + F     DL++ ++YDV+HN AK EEH    K + L V
Sbjct: 248 AANYAWANRQLIAHRVREAFEEVFGGP--DLELRLVYDVAHNYAKKEEH----KGRELWV 301

Query: 241 HRKVSEPSHPG 251
           HRK +  +  G
Sbjct: 302 HRKGATRAFVG 312

Length = 419

>gnl|CDD|224604 COG1690, RtcB, Uncharacterized conserved protein [Function unknown]

 Score =  254 bits (651), Expect = 4e-83
 Identities = 105/251 (41%), Positives = 147/251 (58%), Gaps = 29/251 (11%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +   IP GVG+ G++P     L+E L  G  W++ +G   A D E CE+ G M  AD +K
Sbjct: 104 LDRAIPRGVGTAGVLPDR-NTLQEVLTGGARWAVEQGLGVALDLERCEDGGVMTGADAAK 162

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           +S RA +RGL QLG+LG+GNH+ E+Q VD +YD+ AA+ MG+   G V VMIH+GSRG G
Sbjct: 163 ISDRALQRGLGQLGSLGSGNHFLEVQAVDRVYDEEAAAPMGL-AEGTVWVMIHTGSRGLG 221

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQ+AT              D +   E+AM R  I   DRQLAC  ++S++GQ YL +MAA
Sbjct: 222 HQIAT--------------DFVRLAEQAMGRYGIAVPDRQLACVPVDSEDGQAYLAAMAA 267

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV 240
           AAN+A  NR  +T   R+A  +  +         ++YDV HN+AK E H      + ++V
Sbjct: 268 AANYARANRQLITERVRRALQEVTD---------LLYDVHHNLAKKETHNG----EEVIV 314

Query: 241 HRKVSEPSHPG 251
           HRK +  +  G
Sbjct: 315 HRKGATRAFVG 325

Length = 432

>gnl|CDD|181972 PRK09588, PRK09588, hypothetical protein; Reviewed

 Score = 78.5 bits (194), Expect = 9e-17
 Identities = 53/180 (29%), Positives = 75/180 (41%), Gaps = 44/180 (24%)

Query: 73  LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
           LGT+G GNH+AE+Q VDEIYD    + +G+ D  Q+ +++HSGSRG G            
Sbjct: 129 LGTIGGGNHFAELQQVDEIYDAELFALLGL-DADQLLLLVHSGSRGLGQ----------- 176

Query: 133 CMAYVFPDALVQMEKAMKRDNIET-NDRQLACARINSKEGQDYLKSMAAAANFAWVNRSS 191
                          A+ R ++ +     L      S +   YL     A  FA  NR  
Sbjct: 177 ---------------AILRRHVASFGHNGLP---EGSDDALAYLAEHDDALAFARANRQ- 217

Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
              L  +   +Q     +      + DV+HN    E   V G+   L  HRK + PS  G
Sbjct: 218 ---LIARRILQQLRAEGE-----PVLDVAHNF--VEPCQVGGEDGWL--HRKGATPSDQG 265

Length = 376

>gnl|CDD|213769 TIGR03073, release_rtcB, release factor H-coupled RctB family protein

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 44/181 (24%)

Query: 73  LGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKIT 132
           LGT+G GNH+AE+Q VD+IYD  A + +G+ D  Q+ +++HSGSRG G            
Sbjct: 118 LGTIGGGNHFAELQQVDQIYDADALATLGL-DAKQLLLLVHSGSRGLG------------ 164

Query: 133 CMAYVFPDALVQMEKAMKRDNIETNDRQ-LACARINSKEGQDYLKSMAAAANFAWVNRSS 191
                         +A+ R +++      L      S     YL     A  FA  NR  
Sbjct: 165 --------------QAILRRHVDYFGHNGLP---EGSPAAAAYLAQHDDALRFAKANRQ- 206

Query: 192 MTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLVHRKVSEPSHPG 251
              L  +   ++     D L      DV+HN+       ++G+   L  HRK + P+  G
Sbjct: 207 ---LIARRILQRLRAKGDPL-----LDVNHNL--VSPATIEGEDGWL--HRKGATPADQG 254

Query: 252 V 252
            
Sbjct: 255 P 255

Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes [Protein synthesis, Other]. Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	257
KOG3833|consensus	505		100.0
PF01139	420	RtcB: tRNA-splicing ligase RtcB; InterPro: IPR0012	100.0
COG1690	432	RtcB Uncharacterized conserved protein [Function u	100.0
TIGR03073	356	release_rtcB release factor H-coupled RctB family	100.0
PRK09588	376	hypothetical protein; Reviewed	100.0

>KOG3833|consensus

Probab=100.00  E-value=6.8e-77  Score=548.56  Aligned_cols=243  Identities=83%  Similarity=1.258  Sum_probs=238.4

Q ss_pred             CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094          1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN   80 (257)
Q Consensus         1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN   80 (257)
                      ||..||+||||+|.+++...+|+++|+.|+.|.+++||.|.+|.+|||++|+|..+||.+||+++++|+.+||||||+||
T Consensus       147 lFdhIPvGvGS~g~ipm~a~dL~e~LEmG~dw~Lregy~waEDkEhCEeyGrml~aD~~kVs~raKkrGLpQLGTLGaGN  226 (505)
T KOG3833|consen  147 LFDHIPVGVGSKGRIPMNADDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLQADPRKVSQRAKKRGLPQLGTLGAGN  226 (505)
T ss_pred             HHhhCCcccCcCCcccccHHHHHHHHHhcccceeccCcchhhhHHHHHHhhhHhhCChHHhhhhhhhcCCccccccCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094         81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ  160 (257)
Q Consensus        81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~  160 (257)
                      ||+|||+||||||++.|..|||++.|||++||||||||||||||+              +-+-+|+++|.+.+|.+.|+|
T Consensus       227 HYaEvQvVDEiyd~~~A~~MGI~~kGQvvVMiH~GSRGlGHqVat--------------dsLv~Mekamard~i~~nd~Q  292 (505)
T KOG3833|consen  227 HYAEVQVVDEIYDKEAASKMGIDEKGQVVVMIHSGSRGLGHQVAT--------------DSLVKMEKAMARDKIVVNDRQ  292 (505)
T ss_pred             ceEEEEehHHHhhHhhhhhcCcCCCCcEEEEEecCCccccchhhH--------------HHHHHHHHhhhccceeecchh
Confidence            999999999999999999999998899999999999999999999              989899999999999999999


Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeEE
Q psy10094        161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV  240 (257)
Q Consensus       161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~V  240 (257)
                      |+|++++|.|||+||..|.+|+||||.||..|+...|++|.++|+.+|+++++.+||||+||+++.|+|.|||++++++|
T Consensus       293 LACarinS~Egq~Yl~~MaaAaNfAwVNRs~~Tf~~RqAF~KvF~~s~dd~dl~viYDVsHNiaKvE~H~VdG~er~l~V  372 (505)
T KOG3833|consen  293 LACARINSVEGQDYLKGMAAAANFAWVNRSSMTFLTRQAFAKVFNTSPDDLDLHVIYDVSHNIAKVEKHMVDGKERDLLV  372 (505)
T ss_pred             hcccccCChhhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHhcCCCccccceEEEeehhhhHHHHHHHhcCCceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCC----CCCCCCCCCCCC
Q psy10094        241 HRKVS----EPSHPGVSRNKK  257 (257)
Q Consensus       241 HRKGA----~p~~~~~p~~~~  257 (257)
                      |||||    ||-||.||-.|.
T Consensus       373 HRKGatRAFPpHHPlIpvdYq  393 (505)
T KOG3833|consen  373 HRKGATRAFPPHHPLIPVDYQ  393 (505)
T ss_pred             eccCccccCCCCCCCCccchh
Confidence            99999    999999998873

>PF01139 RtcB: tRNA-splicing ligase RtcB; InterPro: IPR001233 A number of uncharacterised proteins including Escherichia coli rtcB, Mycobacterium tuberculosis MtCY441

Probab=100.00  E-value=1.4e-62  Score=472.10  Aligned_cols=221  Identities=48%  Similarity=0.793  Sum_probs=172.3

Q ss_pred             CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094          1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN   80 (257)
Q Consensus         1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN   80 (257)
                      |++.||+|+|++++++++..++++++++|++|+++.++++++            .+++..+++.+.+++..|||||||||
T Consensus        95 i~~~ip~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~qLGTLGgGN  162 (420)
T PF01139_consen   95 IRKNIPSGVGSHRKIPLSKEDLEEVLEEGAPWLLEKGYGFPE------------EADPSKVSQKARDRGRKQLGTLGGGN  162 (420)
T ss_dssp             HHHHS--STT---SS---CCCHHHHHHHCHHHHHHTTSS-GG------------T--GGGS-HHHHHHHGGGTT---STT
T ss_pred             HhhhCCCCCCCCCCCcCCHHHHHHHHHhhhHHHHHhhcCCcc------------ccchhhccHHHHhhhHhhcCCCCCCc
Confidence            457899999999989999999999999999999999988753            45678899999999999999999999


Q ss_pred             eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094         81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ  160 (257)
Q Consensus        81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~  160 (257)
                      ||||||+||+|||+++|.+|||+++|++||||||||||||++||+              +|++.+.+.+.++++++|+++
T Consensus       163 HFiEiq~v~~v~~~~~a~~~gl~~~g~v~l~vHsGSRglG~~i~~--------------~~~~~a~~~~~~~~~~~~~~~  228 (420)
T PF01139_consen  163 HFIEIQVVEEVFDKEAANALGLDENGQVWLMVHSGSRGLGHQIAE--------------YYIKKAKEQMKKYGIKLPDKD  228 (420)
T ss_dssp             -EEEEEEEEEES-HHHHHHCT--T-TEEEEEEEE--CCHHHHHHH--------------HHHHHHHCCHHHCT---SSCC
T ss_pred             ceEEeeeeehhcCHHHHhhcCccccceEEEEEecCCcHHHHHHHH--------------HHHHHHHHHHHhcCCCCCCcc
Confidence            999999999999999999999998899999999999999999999              777777666778889999999


Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeEE
Q psy10094        161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV  240 (257)
Q Consensus       161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~V  240 (257)
                      |+|+|++|++|++||.+|++|+|||++||++|+++|+++|.++|+. + +++..++||++|||++.|+|  +|  +++||
T Consensus       229 l~~l~~~s~~~~~Yl~~m~~A~~~A~~NR~~i~~~i~~~l~~~~~~-~-~~~~~~~~d~~HN~~~~e~~--~~--~~~~v  302 (420)
T PF01139_consen  229 LAYLPLDSEEGQDYLKAMNAAQNYAFANRQLIAHRILEALRDVFGK-A-DLEIELVYDVHHNYIKFEEH--DG--EEVWV  302 (420)
T ss_dssp             G--EETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-S-C-CC--EEEEEEESEEEEEEEE--CC--EEEEE
T ss_pred             cceecCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCc-c-ccccceEEECcCCCeeEEEe--cc--cceEE
Confidence            9999999999999999999999999999999999999999999987 2 56789999999999999988  44  68999


Q ss_pred             EcCCCCCCCCCCC
Q psy10094        241 HRKVSEPSHPGVS  253 (257)
Q Consensus       241 HRKGA~p~~~~~p  253 (257)
                      |||||+|+...-|
T Consensus       303 hRKGAt~A~~G~~  315 (420)
T PF01139_consen  303 HRKGATPAFKGQP  315 (420)
T ss_dssp             EEESEEE--T--E
T ss_pred             EcccceecCCCCe
Confidence            9999988875433

01., Caenorhabditis elegans F16A11.2 and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0682 belong to this family.; PDB: 2EPG_B 1UC2_B.

>COG1690 RtcB Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=3.5e-56  Score=428.28  Aligned_cols=220  Identities=47%  Similarity=0.725  Sum_probs=211.5

Q ss_pred             CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094          1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN   80 (257)
Q Consensus         1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN   80 (257)
                      ||.+||.|+|+.+. .++..+++.++..|+.|.++.|+++..|+.++|+.|.+..+++..+|+.+..++..||||||+||
T Consensus       104 l~~~vp~G~g~~~~-~~~~~~~~~v~~~~~~~~v~~~~~~~~d~~~~e~~~~~~~~~~~~~~~~~~~~g~~qlgtlg~GN  182 (432)
T COG1690         104 LDRAIPRGVGTAGV-LPDRNTLQEVLTGGARWAVEQGLGVALDLERCEDGGVMTGADAAKISDRALQRGLGQLGSLGSGN  182 (432)
T ss_pred             HHhhCCcccCCCcc-ccchhhhHHHhhccceeeecccccccccccccccccccccccccccchHhhhhhhhhccCccCCC
Confidence            57899999999988 99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094         81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ  160 (257)
Q Consensus        81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~  160 (257)
                      ||+|+|.|+++||+++|+.+||.. +++|||+||||||||||||+              +|+..+.+.+.++++.+|+++
T Consensus       183 hf~Evq~v~~~~d~~~a~~~gl~~-~~v~vm~hsGSrg~G~qi~~--------------~~~~~~~~~~~~~~~~~~~~~  247 (432)
T COG1690         183 HFLEVQAVDRVYDEEAAAPMGLAE-GTVWVMIHTGSRGLGHQIAT--------------DFVRLAEQAMGRYGIAVPDRQ  247 (432)
T ss_pred             cceEEEeccccccHhhHhhcCccc-ccEEEEEEeccccccchhHH--------------HHHHHHHHhhhhhcccCcchh
Confidence            999999999999999999999998 99999999999999999999              999988888888899999999


Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeEE
Q psy10094        161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLLV  240 (257)
Q Consensus       161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~V  240 (257)
                      |+|+|++|+++++|+.+|++|+|||++||++|++++++.|..+|         .++|||+||++|.|.|++    +++||
T Consensus       248 la~~~~~s~e~~~y~~am~~A~~~a~~Nr~~i~~~~~~~~~~~~---------~l~~~v~hN~~~~e~h~~----~~~~v  314 (432)
T COG1690         248 LACVPVDSEDGQAYLAAMAAAANYARANRQLITERVRRALQEVT---------DLLYDVHHNLAKKETHNG----EEVIV  314 (432)
T ss_pred             hhccccCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhe---------eeeeecchhhhhHHHhcc----cceee
Confidence            99999999999999999999999999999999999999998877         478999999999999975    68999


Q ss_pred             EcCCCCCCC
Q psy10094        241 HRKVSEPSH  249 (257)
Q Consensus       241 HRKGA~p~~  249 (257)
                      |||||+++.
T Consensus       315 hRKgAt~A~  323 (432)
T COG1690         315 HRKGATRAF  323 (432)
T ss_pred             eccccCHhh
Confidence            999999876

>TIGR03073 release_rtcB release factor H-coupled RctB family protein

Probab=100.00  E-value=7.2e-51  Score=383.73  Aligned_cols=143  Identities=31%  Similarity=0.469  Sum_probs=127.1

Q ss_pred             hcCCCCCccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHH
Q psy10094         67 KRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQME  146 (257)
Q Consensus        67 ~r~~~qLGTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~  146 (257)
                      +++..|||||||||||||||+||+|||+++|++|||++ |++||||||||||||++||+              +|++.+.
T Consensus       112 ~~~~~qLGTlGgGNHFiEiq~v~~i~d~~~a~~~Gl~~-g~v~l~iHSGSRglG~~i~~--------------~~~~~~~  176 (356)
T TIGR03073       112 HGFRSSLGTIGGGNHFAELQQVDQIYDADALATLGLDA-KQLLLLVHSGSRGLGQAILR--------------RHVDYFG  176 (356)
T ss_pred             ccchhccCCCCCCcceEEEEeeccccCHHHHHHcCCCC-CcEEEEEecCCchhHHHHHH--------------HHHHHHH
Confidence            67788999999999999999999999999999999997 99999999999999999999              6654431


Q ss_pred             HHHHhCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccce
Q psy10094        147 KAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKT  226 (257)
Q Consensus       147 ~~~~~~gi~~~d~~la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~  226 (257)
                          .          .++|++|++|++||.+|++|+|||++||++|+++++++|...         ..++||++|||+|+
T Consensus       177 ----~----------~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~v~~~l~~~---------~~~~~d~~HN~~~~  233 (356)
T TIGR03073       177 ----H----------NGLPEGSPAAAAYLAQHDDALRFAKANRQLIARRILQRLRAK---------GDPLLDVNHNLVSP  233 (356)
T ss_pred             ----H----------cCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---------cceEEEccccceee
Confidence                1          256789999999999999999999999999999999988432         35789999999999


Q ss_pred             eeeecCCceeeeEEEcCCCCCCCCC
Q psy10094        227 EEHMVDGKQKTLLVHRKVSEPSHPG  251 (257)
Q Consensus       227 E~h~~~G~~~~~~VHRKGA~p~~~~  251 (257)
                      |+|  +|  +++|||||||+|+...
T Consensus       234 E~~--~g--~~~~vhRKGAt~A~~g  254 (356)
T TIGR03073       234 ATI--EG--EDGWLHRKGATPADQG  254 (356)
T ss_pred             eee--cC--ceEEEECccccccCCC
Confidence            986  56  5789999999998765

Members of this family are related to RctB. RctB a protein of known structure but unknown function that often is encoded near RNA cyclase and therefore is suggested to be a tRNA or mRNA processing enzyme. This family of RctB-like proteins in encoded upstream of, and apparently is translationally coupled to, the putative peptide chain release factor RF-H (TIGR03072), product of the prfH gene. Note that a large deletion at the junction between this gene and the prfH gene in Escherichia coli K-12 marks both as probable pseudogenes.

>PRK09588 hypothetical protein; Reviewed

Probab=100.00  E-value=4.7e-50  Score=380.44  Aligned_cols=143  Identities=31%  Similarity=0.470  Sum_probs=126.0

Q ss_pred             HhcCCCCCccCCCCeeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHH
Q psy10094         66 KKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQM  145 (257)
Q Consensus        66 ~~r~~~qLGTLGgGNHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~  145 (257)
                      .+++..|||||||||||||||+||+|||+++|++|||++ |++||||||||||||++||+              +|++.+
T Consensus       122 ~~~~~~qLGTlGgGNHFiEiq~v~~i~d~~~a~~~gl~~-g~v~l~vHsGSRglG~~v~~--------------~~~~~~  186 (376)
T PRK09588        122 QHPWRSSLGTIGGGNHFAELQQVDEIYDAELFALLGLDA-DQLLLLVHSGSRGLGQAILR--------------RHVASF  186 (376)
T ss_pred             hhhhhhhcCCCCCCcceEEEEeeceecCHHHHHHcCCCC-CcEEEEEecCCchhHHHHHH--------------HHHHHh
Confidence            467888999999999999999999999999999999987 99999999999999999999              665433


Q ss_pred             HHHHHhCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccc
Q psy10094        146 EKAMKRDNIETNDRQLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAK  225 (257)
Q Consensus       146 ~~~~~~~gi~~~d~~la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~  225 (257)
                      .              ...+|++|++|++||.+|++|+|||++||++|+++++++|    +.     ++.++||++|||++
T Consensus       187 ~--------------~~~l~~~s~~g~~Yl~~m~~A~~~A~~NR~~i~~~i~~~l----~~-----~~~~~~d~~HN~~~  243 (376)
T PRK09588        187 G--------------HNGLPEGSDDALAYLAEHDDALAFARANRQLIARRILQQL----RA-----EGEPVLDVAHNFVE  243 (376)
T ss_pred             h--------------hcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cc-----CCCeEEECcCccee
Confidence            1              1236889999999999999999999999999999999888    43     24678999999999


Q ss_pred             eeeeecCCceeeeEEEcCCCCCCCC
Q psy10094        226 TEEHMVDGKQKTLLVHRKVSEPSHP  250 (257)
Q Consensus       226 ~E~h~~~G~~~~~~VHRKGA~p~~~  250 (257)
                      +|.|  +|  +++|||||||+|+..
T Consensus       244 ~e~~--~~--~~~~vhRKGAt~A~g  264 (376)
T PRK09588        244 PCQV--GG--EDGWLHRKGATPSDQ  264 (376)
T ss_pred             EEEE--CC--eeEEEECcccccCCC
Confidence            9976  45  578999999998853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	257
4dwr_B	487	Rna Ligase RtcbMN2+ COMPLEX Length = 487		9e-60
1uc2_A	481	Hypothetical Extein Protein Of Ph1602 From Pyrococc		1e-59
2epg_A	487	Crystal Structure Of Ttha1785 Length = 487		2e-45

>pdb|4DWR|B Chain B, Rna Ligase RtcbMN2+ COMPLEX Length = 487

Iteration: 1
 Score =  226 bits (576), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +F ++P GVGS+G I ++   +++ L  G  W++  GY W  D E  EE GRM  ADP  
Sbjct: 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 182
Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVA+              D L  ME+A+++  I   DR+L      S+EGQ Y  +M A
Sbjct: 242 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AANFAW NR  +T   R++F + F   P+ DL M ++YDV+HNI K EEH VDGK+  ++
Sbjct: 288 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347
Query: 240 VHRKVS----EPSHPGVSR 254
           VHRK +     P H  V R
Sbjct: 348 VHRKGATRAFPPGHEAVPR 366

>pdb|1UC2|A Chain A, Hypothetical Extein Protein Of Ph1602 From Pyrococcus Horikoshii Length = 481

Iteration: 1
 Score =  226 bits (576), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 117/259 (45%), Positives = 160/259 (61%), Gaps = 20/259 (7%)
Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +F ++P GVGS+G I ++   +++ L  G  W++  GY W  D E  EE GRM  ADP  
Sbjct: 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 182
Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 241
Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVA+              D L  ME+A+++  I   DR+L      S+EGQ Y  +M A
Sbjct: 242 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 287
Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AANFAW NR  +T   R++F + F   P+ DL M ++YDV+HNI K EEH VDGK+  ++
Sbjct: 288 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347
Query: 240 VHRKVS----EPSHPGVSR 254
           VHRK +     P H  V R
Sbjct: 348 VHRKGATRAFPPGHEAVPR 366

>pdb|2EPG|A Chain A, Crystal Structure Of Ttha1785 Length = 487

Iteration: 1
 Score =  179 bits (453), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 115/257 (44%), Positives = 154/257 (59%), Gaps = 25/257 (9%)
Query: 1   MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
           ++  +P GVGS +  +  + R+L+E L+ G  W ++ GY + ED    E  GR+  A+P 
Sbjct: 134 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 193
Query: 60  KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
           KVS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA   G+   GQV V+IH+GSRG 
Sbjct: 194 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 252
Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
           GHQV         C  YV      +  K   R  IE  D+QLA A I S EGQDYL++ A
Sbjct: 253 GHQV---------CQDYV-----ERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAXA 298
Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AAANFA+ NR  +    R+AF K    TP D  + V+YD++HN AK EEH    + + +L
Sbjct: 299 AAANFAFANRQLIAHFVREAFEK-VGFTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 353
Query: 240 VHRKVSE----PSHPGV 252
           VHRK +     P HP V
Sbjct: 354 VHRKGATRAFGPGHPEV 370

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	257
1uc2_A	481	PH1602, hypothetical protein PH1602; structural ge	5e-78
2epg_A	487	Hypothetical protein TTHA1785; alpha-beta fold, st	8e-78

>1uc2_A PH1602, hypothetical protein PH1602; structural genomics, unknown function; HET: SUC; 2.15A {Pyrococcus horikoshii} SCOP: d.261.1.1 Length = 481

 Score =  242 bits (619), Expect = 5e-78
 Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 16/252 (6%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +F ++P GVGS+G I ++   +++ L  G  W++  GY W  D E  EE GRM  ADP  
Sbjct: 123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 182

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG G
Sbjct: 183 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 241

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVA+              D L  ME+A+++  I   DR+L      S+EGQ Y  +M A
Sbjct: 242 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 287

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AANFAW NR  +T   R++F + F   P+ DL M ++YDV+HNI K EEH VDGK+  ++
Sbjct: 288 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 347

Query: 240 VHRKVSEPSHPG 251
           VHRK +  + P 
Sbjct: 348 VHRKGATRAFPP 359

>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus} Length = 487

 Score =  242 bits (618), Expect = 8e-78
 Identities = 110/252 (43%), Positives = 151/252 (59%), Gaps = 21/252 (8%)

Query: 1   MFDHIPVGVGS-KGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPS 59
           ++  +P GVGS +  +  + R+L+E L+ G  W ++ GY + ED    E  GR+  A+P 
Sbjct: 134 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPD 193

Query: 60  KVSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGF 119
           KVS RA +RG PQ+GTLG+GNH+ E+Q VDE+YD+ AA   G+   GQV V+IH+GSRG 
Sbjct: 194 KVSERAFERGAPQIGTLGSGNHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGL 252

Query: 120 GHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMA 179
           GHQV                D + +  K   R  IE  D+QLA A I S EGQDYL++MA
Sbjct: 253 GHQVCQ--------------DYVERFLKVAPRYGIELVDKQLAAAPIKSPEGQDYLQAMA 298

Query: 180 AAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AAANFA+ NR  +    R+AF K    TP D  + V+YD++HN AK EEH    + + +L
Sbjct: 299 AAANFAFANRQLIAHFVREAFEKVG-FTPRDHGLRVLYDLAHNNAKFEEH----RGRRVL 353

Query: 240 VHRKVSEPSHPG 251
           VHRK +  +   
Sbjct: 354 VHRKGATRAFGP 365

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	257
4dwr_B	487	PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA li	100.0
2epg_A	487	Hypothetical protein TTHA1785; alpha-beta fold, st	100.0

>4dwr_B PHO HYP2 intein, tRNA-splicing ligase RTCB; RNA ligase, Mn2+; HET: SUC; 1.48A {Pyrococcus horikoshii} PDB: 1uc2_A* 4dwq_A*

Probab=100.00  E-value=2e-74  Score=560.99  Aligned_cols=242  Identities=48%  Similarity=0.837  Sum_probs=232.1

Q ss_pred             CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094          1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN   80 (257)
Q Consensus         1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN   80 (257)
                      ||++||+|+|++++++++..+++++|..|++|+++.||+|++|++++|+.|+|..+||+.+|+++++|+..|||||||||
T Consensus       123 i~~~iP~G~g~~~~~~~~~~~~~~~l~~g~~w~~~~g~~~~~dl~~~ee~g~~~~~d~~~v~~~~~~r~~~qLGTLGgGN  202 (487)
T 4dwr_B          123 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGN  202 (487)
T ss_dssp             HHHHSCCSSSTTCCCCCCGGGCHHHHHHTHHHHHHTTSSCGGGGGGSGGGGCCTTCCGGGSCHHHHHHHGGGTTCCCSSS
T ss_pred             HHhhCCCCcCccCccccchhhhhHHHhhhHHHHHhcccchHhHHHHHHhcCCcccCChHHHhHHHHhhhhhhccCCCCCc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094         81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ  160 (257)
Q Consensus        81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~  160 (257)
                      ||||||+||+|||+++|++|||++ |+|||||||||||||+|||+              +|++.+.++++++++++||++
T Consensus       203 HFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~~Ia~--------------~~~~~a~~~~~~~~~~~pd~~  267 (487)
T 4dwr_B          203 HFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVAS--------------DYLRIMERAIRKYRIPWPDRE  267 (487)
T ss_dssp             CEEEEEEEEEESCHHHHHHTTCCT-TBEEEEEEECCHHHHHHHHH--------------HHHHHHHHHHHHHTCCCCSTT
T ss_pred             eeEEEeeeehhcCHHHHHHcCCCc-CcEEEEEECCCCcccHHHHH--------------HHHHHHHHHHHHcCCCCCChh
Confidence            999999999999999999999997 99999999999999999999              899989899999999999999


Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC-CCCceeeEEecCcccceeeeecCCceeeeE
Q psy10094        161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL  239 (257)
Q Consensus       161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~-~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~  239 (257)
                      |+|+|++|++|++||.+|++|+|||++||++|+++++++|+++|+.+++ +++++++|||+|||++.|+|.++|+.+++|
T Consensus       268 la~~~~~s~eg~~Yl~am~~A~~yA~~NR~~i~~~v~~~~~~~~~~~~~~~l~~~~~~dv~HN~~~~E~h~~~g~~~~~~  347 (487)
T 4dwr_B          268 LVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI  347 (487)
T ss_dssp             CCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCCCEEEEEESEEEEEEEEEETTEEEEEE
T ss_pred             hccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCcccccccceeeeeecccceeeeeeeccccceEE
Confidence            9999999999999999999999999999999999999999999998765 577899999999999999999999988999


Q ss_pred             EEcCCC----CCCCCCCCCCCC
Q psy10094        240 VHRKVS----EPSHPGVSRNKK  257 (257)
Q Consensus       240 VHRKGA----~p~~~~~p~~~~  257 (257)
                      ||||||    +|+||++|..|+
T Consensus       348 VHRKGAt~A~~~~~~~~p~~~~  369 (487)
T 4dwr_B          348 VHRKGATRAFPPGHEAVPRLYR  369 (487)
T ss_dssp             EEEESEEECCCTTCTTSCGGGT
T ss_pred             EEecccccccCCCCcccchhhh
Confidence            999999    577899998763

>2epg_A Hypothetical protein TTHA1785; alpha-beta fold, structural genomics, NPPSFA, national proje protein structural and functional analyses; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-74  Score=561.61  Aligned_cols=237  Identities=49%  Similarity=0.777  Sum_probs=217.9

Q ss_pred             CCcccccCCCCCC-ccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCC
Q psy10094          1 MFDHIPVGVGSKG-IIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAG   79 (257)
Q Consensus         1 l~~~iP~G~g~~~-~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgG   79 (257)
                      ||++||+|+|+++ .++++..+++++++.|++|+++.||+|.+|++++|++|||.++||+.+|+++++|+..||||||||
T Consensus       134 l~~~iP~G~g~~~~~~~~~~~~~~~~~~~g~~w~~~~g~~~~~dl~~~e~~g~~~~~~~~~~~~~~~~r~~~qLGTLGgG  213 (487)
T 2epg_A          134 LYRLVPSGVGSERRDVRFSKRELKEILKEGAGWLVKRGYGYPEDVRFIESQGRLPWANPDKVSERAFERGAPQIGTLGSG  213 (487)
T ss_dssp             HHHHSCC------CCCCCCHHHHHHHHHHTHHHHHHTTSSCGGGGGGBGGGGCCTTCCGGGSCHHHHHHHGGGTTCCCSS
T ss_pred             HHHhCCCCCCCCCCcccCCHHHHHHHHhccchhhhhccccchhhHHHHHhcccccccChhhhcHHHHhhhhhhcCCCCCC
Confidence            4789999999988 789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCc
Q psy10094         80 NHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDR  159 (257)
Q Consensus        80 NHFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~  159 (257)
                      |||||||+||+|||+++|++|||++ |+|||||||||||||+|||+              +|++.+.+.++++++++||+
T Consensus       214 NHFiEvq~vd~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~qIa~--------------~~~~~a~~~~~~~~i~~pd~  278 (487)
T 2epg_A          214 NHFLEVQYVDEVYDEEAALAFGLFK-GQVTVLIHTGSRGLGHQVCQ--------------DYVERFLKVAPRYGIELVDK  278 (487)
T ss_dssp             SCEEEEEEEEEESCHHHHHHHTCCT-TEEEEEEEECCHHHHHHHHH--------------HHHHHHHTTHHHHTCCCSSG
T ss_pred             CcEEEEEEeeEeccHhHHHhcCCCC-CcEEEEEecCCchhHHHHHH--------------HHHHHHHHHHHhcCCCCCCc
Confidence            9999999999999999999999986 99999999999999999999              88888888888999999999


Q ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCCCceeeEEecCcccceeeeecCCceeeeE
Q psy10094        160 QLACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPDDLDMHVIYDVSHNIAKTEEHMVDGKQKTLL  239 (257)
Q Consensus       160 ~la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~  239 (257)
                      +|+|+|++|++|++||.+|++|+|||++||++|+++|+++|.++ +.++.++++.++|||+|||||+|+|  +|  +++|
T Consensus       279 ~La~l~~~s~eg~~Yl~am~~A~nyA~~NR~~i~~~v~~~~~~~-~~~~~~~~~~~~~dv~HN~a~~E~h--~~--~~~~  353 (487)
T 2epg_A          279 QLAAAPIKSPEGQDYLQAMAAAANFAFANRQLIAHFVREAFEKV-GFTPRDHGLRVLYDLAHNNAKFEEH--RG--RRVL  353 (487)
T ss_dssp             GGCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHCCEEEEEEESEEEEEEEE--TT--EEEE
T ss_pred             cceeEeCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHc-CCCcccCCcceEEEeecCccccccc--CC--ceEE
Confidence            99999999999999999999999999999999999999999988 7544445678899999999999998  55  6899


Q ss_pred             EEcCCC----CCCCCCCCCCCC
Q psy10094        240 VHRKVS----EPSHPGVSRNKK  257 (257)
Q Consensus       240 VHRKGA----~p~~~~~p~~~~  257 (257)
                      ||||||    ||+||++|+.|+
T Consensus       354 VhRKGAtrA~~~g~~~~p~~y~  375 (487)
T 2epg_A          354 VHRKGATRAFGPGHPEVPEEYR  375 (487)
T ss_dssp             EEEESCEECCCTTCTTSCTTTT
T ss_pred             EEccccccCCCCCCccccchhh
Confidence            999999    788999998874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	257
d1uc2a_	480	d.261.1.1 (A:) Hypothetical protein PH1602 {Archae	6e-79

>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 480

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein PH1602
superfamily: Hypothetical protein PH1602
family: Hypothetical protein PH1602
domain: Hypothetical protein PH1602
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  243 bits (622), Expect = 6e-79
 Identities = 114/252 (45%), Positives = 158/252 (62%), Gaps = 16/252 (6%)

Query: 1   MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSK 60
           +F ++P GVGS+G I ++   +++ L  G  W++  GY W  D E  EE GRM  ADP  
Sbjct: 122 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEA 181

Query: 61  VSMRAKKRGLPQLGTLGAGNHYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFG 120
           VS RAK+RG PQLG+LG+GNH+ E+Q+VD+I+D   A   G+ + GQV VM+H+GSRG G
Sbjct: 182 VSQRAKQRGAPQLGSLGSGNHFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLG 240

Query: 121 HQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQLACARINSKEGQDYLKSMAA 180
           HQVA+              D L  ME+A+++  I   DR+L      S+EGQ Y  +M A
Sbjct: 241 HQVAS--------------DYLRIMERAIRKYRIPWPDRELVSVPFQSEEGQRYFSAMKA 286

Query: 181 AANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL 239
           AANFAW NR  +T   R++F + F   P+ DL M ++YDV+HNI K EEH VDGK+  ++
Sbjct: 287 AANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI 346

Query: 240 VHRKVSEPSHPG 251
           VHRK +  + P 
Sbjct: 347 VHRKGATRAFPP 358

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	257
d1uc2a_	480	Hypothetical protein PH1602 {Archaeon Pyrococcus h	100.0

>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: Hypothetical protein PH1602
superfamily: Hypothetical protein PH1602
family: Hypothetical protein PH1602
domain: Hypothetical protein PH1602
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5e-72  Score=541.10  Aligned_cols=242  Identities=48%  Similarity=0.837  Sum_probs=231.8

Q ss_pred             CCcccccCCCCCCccCCCHHHHHHHHHccchhhhhccCcchhhhhhhhhhcccCCCCCccccHHHHhcCCCCCccCCCCe
Q psy10094          1 MFDHIPVGVGSKGIIPMNARDLEEALEMGMDWSLREGYIWAEDKEHCEEYGRMLNADPSKVSMRAKKRGLPQLGTLGAGN   80 (257)
Q Consensus         1 l~~~iP~G~g~~~~~~~~~~~l~~vl~~G~~~~v~~g~~~~~D~~~~E~~g~~~~~d~~~vs~~a~~r~~~qLGTLGgGN   80 (257)
                      |++.||+|+|++++.+++..+++.+|..|++|+++.|+++++|++++|+.|++..+|+..++++++.|+..|||||||||
T Consensus       122 l~~~ip~G~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~dl~~~e~~g~~~~~d~~~v~~~~~~r~~~qLGTLGgGN  201 (480)
T d1uc2a_         122 LFKNVPSGVGSQGRIKLHWTQIDDVLVDGAKWAVDNGYGWERDLERLEEGGRMEGADPEAVSQRAKQRGAPQLGSLGSGN  201 (480)
T ss_dssp             HHHHSCCSTTCCCSSCCCTTSCHHHHHHHHHHHHHTTSSCGGGGGGSGGGGCCTTCCGGGSCHHHHHHHGGGSSCCCSTT
T ss_pred             HHhhCCcCcCcCCccccchhhhhhhhhhhhHHHHhcccchhhhHHHHHhcCCcccCChhhhhHHHHhcccccccccCCCc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeeeeechhHHHhcCCCCCceEEEEEccCchhhhhhhhcchhhhhhhcccchhHHHHHHHHHHHhCCCCCCCcc
Q psy10094         81 HYAEIQIVDEIYDKWAASKMGIEDVGQVCVMIHSGSRGFGHQVATGKCEKITCMAYVFPDALVQMEKAMKRDNIETNDRQ  160 (257)
Q Consensus        81 HFiEiq~vd~i~d~~~a~~~Gl~~~g~v~l~IHSGSRglG~~Va~~~~~~~~~~a~~~~~~~~~~~~~~~~~gi~~~d~~  160 (257)
                      ||||||+||+|||+++|++|||++ |++||||||||||||++||+              +|++.+.++++++++++|+++
T Consensus       202 HFiEiq~ve~i~d~~~a~~~Gl~~-g~v~lmiHSGSRglG~~V~~--------------~y~~~~~~~~~~~~~~~pd~~  266 (480)
T d1uc2a_         202 HFLEVQVVDKIFDPEVAKAYGLFE-GQVVVMVHTGSRGLGHQVAS--------------DYLRIMERAIRKYRIPWPDRE  266 (480)
T ss_dssp             CEEEEEEEEEESCHHHHHHTTCCT-TBEEEEEEECCHHHHHHHHH--------------HHHHHHHHHGGGSCCCCSSTT
T ss_pred             eeEEEeeeeeecCHHHHHHcCCCc-CcEEEEEeCCCCcccHHHHH--------------HHHHHHHHHHHhcCCCCCchh
Confidence            999999999999999999999998 99999999999999999999              888888899999999999999


Q ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCC-CCCceeeEEecCcccceeeeecCCceeeeE
Q psy10094        161 LACARINSKEGQDYLKSMAAAANFAWVNRSSMTFLCRQAFAKQFNTTPD-DLDMHVIYDVSHNIAKTEEHMVDGKQKTLL  239 (257)
Q Consensus       161 la~~~~~s~eg~~Yl~am~~A~nfA~~NR~~i~~~v~~~~~~~~~~~~~-~~~~~~v~Dv~HN~a~~E~h~~~G~~~~~~  239 (257)
                      |+++|++|++|++||.||++|+|||++||++|+++|+++|.++|+..++ +++++++|||+|||++.|+|.++|+.+++|
T Consensus       267 la~~p~~s~~g~~Yl~aM~~A~nfA~~NR~~i~~~i~~~l~~~~~~~~~~~l~~~~v~dv~HN~~~~E~h~~~~~~~~~~  346 (480)
T d1uc2a_         267 LVSVPFQSEEGQRYFSAMKAAANFAWANRQMITHWVRESFQEVFKQDPEGDLGMDIVYDVAHNIGKVEEHEVDGKRVKVI  346 (480)
T ss_dssp             CCCEETTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTTTTCCCEEEEEESEEEEEEEEEETTEEEEEE
T ss_pred             hccccCCCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCcccccccceeeecccchhhhhhhccccccceEE
Confidence            9999999999999999999999999999999999999999999998754 577899999999999999999999989999


Q ss_pred             EEcCCC----CCCCCCCCCCCC
Q psy10094        240 VHRKVS----EPSHPGVSRNKK  257 (257)
Q Consensus       240 VHRKGA----~p~~~~~p~~~~  257 (257)
                      ||||||    +|+||++|..|+
T Consensus       347 VHRKGAt~A~~~~~~~~~~~~~  368 (480)
T d1uc2a_         347 VHRKGATRAFPPGHEAVPRLYR  368 (480)
T ss_dssp             EEEESEEECCCTTCTTSCTTTT
T ss_pred             EEeccccccCCCCCcccchhhh
Confidence            999999    577889998874