Psyllid ID: psy1121

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHcccccccEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEHHHHHHHHHHHHHHHHHccEEEEEcccEEEcHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEEHHHHHHHHHHHHHHHHHHHcHHHccccccccHHHHHHcc
Coil and Loop (DISEMBL)
mdtgdeyevgdsgqpddgnchagrrprcrrkkvhhstvvnpdsnlYFYWLLIITCCVLYNLWTLIVRQSfpelqengakfwffcdyttdtfIVLDILVQFRTGYleqgnnnnnHITYYERQL
Flexible Loop (DISEMBL)
mdtgdeyevgdsgqpddgnchagrrprcrrkkvhhstvvnpdsnlYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTgyleqgnnnnnhityyerql
Low Complexity Region (SEG)
MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL
Disordered region (IsUnstruct)
**********************************HSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYL*****************
Disordered Region (DISOPRED)
***********************************STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL
Disordered Region (DISEMBL)
**************PDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL
Disordered Region (DISPRO)
********************************VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYY*R*L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
Q90805	735	Cyclic nucleotide-gated c	yes	N/A	0.581	0.096	0.507	1e-15
Q16281	694	Cyclic nucleotide-gated c	yes	N/A	0.598	0.105	0.493	1e-14
Q9JJZ8	631	Cyclic nucleotide-gated c	yes	N/A	0.721	0.139	0.404	1e-13
Q90980	645	Cyclic nucleotide-gated c	no	N/A	0.573	0.108	0.458	2e-13
Q29441	706	Cyclic nucleotide-gated c	yes	N/A	0.598	0.103	0.438	2e-13
Q28279	691	cGMP-gated cation channel	no	N/A	0.581	0.102	0.450	5e-13
Q62927	683	cGMP-gated cation channel	no	N/A	0.573	0.102	0.458	5e-13
P29973	690	cGMP-gated cation channel	no	N/A	0.573	0.101	0.444	5e-13
Q00194	690	cGMP-gated cation channel	no	N/A	0.573	0.101	0.472	6e-13
Q64359	575	Cyclic nucleotide-gated c	no	N/A	0.581	0.123	0.422	1e-12

>sp|Q90805|CNG1_CHICK Cyclic nucleotide-gated channel cone photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P SN+Y+ WL II   V YN   LI R  F ELQ +  K W F DY +D   V D+ 
Sbjct: 202 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 261

Query: 98  VQFRTGYLEQG 108
           V+FRTG+LEQG
Sbjct: 262 VRFRTGFLEQG 272

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors.
Gallus gallus (taxid: 9031)

>sp|Q16281|CNGA3_HUMAN Cyclic nucleotide-gated cation channel alpha-3 OS=Homo sapiens GN=CNGA3 PE=1 SV=2

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/73 (49%), Positives = 44/73 (60%)

Query: 36  STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
           + VV+P SNLY+ WL  I   V YN + LI R  F ELQ      W   DY+ D   VLD
Sbjct: 158 AIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSADVLYVLD 217

Query: 96  ILVQFRTGYLEQG 108
           +LV+ RTG+LEQG
Sbjct: 218 VLVRARTGFLEQG 230

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3 (By similarity). Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones.

Homo sapiens (taxid: 9606)

>sp|Q9JJZ8|CNGA3_MOUSE Cyclic nucleotide-gated cation channel alpha-3 OS=Mus musculus GN=Cnga3 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/99 (40%), Positives = 50/99 (50%), Gaps = 11/99 (11%)

Query: 10  GDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQS 69
           G+   PD G    GR+            VV+P SN+Y+ WL  I   V YN   L+ R  
Sbjct: 84  GEQKPPDGGE---GRK--------EEPIVVDPSSNIYYRWLTAIALPVFYNWCLLVCRAC 132

Query: 70  FPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
           F ELQ      W   DY+ D   VLD+LV+ RTG+LEQG
Sbjct: 133 FDELQSEHLTLWLVLDYSADVLYVLDMLVRARTGFLEQG 171

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones (By similarity). Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3.

Mus musculus (taxid: 10090)

>sp|Q90980|CNG3_CHICK Cyclic nucleotide-gated channel rod photoreceptor subunit alpha OS=Gallus gallus PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 46/72 (63%), Gaps = 2/72 (2%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +++P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +    WF  DY +D   + D+
Sbjct: 109 IIDPAGNMYYNWLFCITMPVMYN-WTMIIARACFDELQNDYLAVWFIVDYVSDVIYIADM 167

Query: 97  LVQFRTGYLEQG 108
            V+ RTGYLEQG
Sbjct: 168 FVRTRTGYLEQG 179

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Gallus gallus (taxid: 9031)

>sp|Q29441|CNGA3_BOVIN Cyclic nucleotide-gated cation channel alpha-3 OS=Bos taurus GN=CNGA3 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/73 (43%), Positives = 44/73 (60%)

Query: 36  STVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLD 95
           S V++P SN+Y++WL +I   V YN   L+ R  F ELQ      W   DY+ D    +D
Sbjct: 177 SVVMDPSSNMYYHWLTVIAVPVFYNWCLLVCRACFDELQSEHLMLWLVLDYSADILYGMD 236

Query: 96  ILVQFRTGYLEQG 108
           +LV+ RTG+LEQG
Sbjct: 237 MLVRARTGFLEQG 249

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of cone photoreceptors. Essential for the generation of light-evoked electrical responses in the red-, green- and blue sensitive cones Induced a flickering channel gating, weakened the outward rectification in the presence of extracellular calcium, increased sensitivity for L-cis diltiazem and enhanced the cAMP efficacy of the channel when coexpressed with CNGB3 (By similarity). Could be responsible for cGMP-induced calcium entry in cells other than sensory cells. Might be involved in chemotaxis of sperm.

Bos taurus (taxid: 9913)

>sp|Q28279|CNGA1_CANFA cGMP-gated cation channel alpha-1 OS=Canis familiaris GN=CNGA1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/71 (45%), Positives = 45/71 (63%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  N+Y+ WL  IT  V+YN   +I R  F ELQ +  ++W   DY +D   +LD+ 
Sbjct: 156 VIDPAGNMYYNWLFCITLPVMYNWTMVIARACFDELQSDYLEYWIIFDYLSDIVYLLDMF 215

Query: 98  VQFRTGYLEQG 108
           V+ RTGYLEQG
Sbjct: 216 VRTRTGYLEQG 226

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Canis familiaris (taxid: 9615)

>sp|Q62927|CNGA1_RAT cGMP-gated cation channel alpha-1 OS=Rattus norvegicus GN=Cnga1 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           V++P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +  ++W   DY +D   + D+
Sbjct: 148 VIDPSGNMYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWLIFDYVSDVVYLADM 206

Query: 97  LVQFRTGYLEQG 108
            V+ RTGYLEQG
Sbjct: 207 FVRTRTGYLEQG 218

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Rattus norvegicus (taxid: 10116)

>sp|P29973|CNGA1_HUMAN cGMP-gated cation channel alpha-1 OS=Homo sapiens GN=CNGA1 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           V++P  N Y+ WL  IT  V+YN WT+++ R  F ELQ +  ++W   DY +D   ++D+
Sbjct: 157 VIDPSGNTYYNWLFCITLPVMYN-WTMVIARACFDELQSDYLEYWLILDYVSDIVYLIDM 215

Query: 97  LVQFRTGYLEQG 108
            V+ RTGYLEQG
Sbjct: 216 FVRTRTGYLEQG 227

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cyclic GMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Homo sapiens (taxid: 9606)

>sp|Q00194|CNGA1_BOVIN cGMP-gated cation channel alpha-1 OS=Bos taurus GN=CNGA1 PE=1 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 47/72 (65%), Gaps = 2/72 (2%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           V++P  N Y+ WL  IT  V+YN WT+I+ R  F ELQ +  ++W   DY +D   +LD+
Sbjct: 155 VIDPSGNTYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWLAFDYLSDVVYLLDM 213

Query: 97  LVQFRTGYLEQG 108
            V+ RTGYLEQG
Sbjct: 214 FVRTRTGYLEQG 225

Visual signal transduction is mediated by a G-protein coupled cascade using cGMP as second messenger. This protein can be activated by cGMP which leads to an opening of the cation channel and thereby causing a depolarization of rod photoreceptors.

Bos taurus (taxid: 9913)

>sp|Q64359|CNGA4_RAT Cyclic nucleotide-gated cation channel alpha-4 OS=Rattus norvegicus GN=Cnga4 PE=2 SV=1

 Score = 71.6 bits (174), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/71 (42%), Positives = 46/71 (64%)

Query: 38  VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
           V++P  + Y++WL  +   ++YNL  ++ R  FP+LQ +    WF  DYT+D   +LDI 
Sbjct: 26  VLDPSGDYYYWWLNTMVFPIMYNLIIVVCRACFPDLQHSYLVAWFVLDYTSDLLYLLDIG 85

Query: 98  VQFRTGYLEQG 108
           V+F TG+LEQG
Sbjct: 86  VRFHTGFLEQG 96

Second messenger, cAMP, causes the opening of cation-selective cyclic nucleotide-gated (CNG) channels and depolarization of the neuron (olfactory sensory neurons, OSNs). CNGA4 is the modulatory subunit of this channel which is known to play a central role in the transduction of odorant signals and subsequent adaptation. By accelerating the calcium-mediated negative feedback in olfactory signaling it allows rapid adaptation to odor stimulation and extends its range of odor detection.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
157103345	1328	cyclic-nucleotide-gated cation channel [	0.803	0.073	0.58	4e-28
195432282	1812	GK20012 [Drosophila willistoni] gi|19416	0.811	0.054	0.551	5e-28
170050110	1338	cyclic-nucleotide-gated cation channel [	0.803	0.073	0.57	3e-27
442616418	1825	CNG channel-like, isoform H [Drosophila	0.590	0.039	0.694	2e-26
442616416	1881	CNG channel-like, isoform G [Drosophila	0.590	0.038	0.694	2e-26
45549131	1453	CNG channel-like, isoform C [Drosophila	0.590	0.049	0.694	2e-26
45551460	1853	CNG channel-like, isoform B [Drosophila	0.590	0.038	0.694	2e-26
386764484	1970	CNG channel-like, isoform E [Drosophila	0.590	0.036	0.694	2e-26
386764482	1955	CNG channel-like, isoform D [Drosophila	0.590	0.036	0.694	2e-26
195478813	1824	GE16049 [Drosophila yakuba] gi|194188186	0.590	0.039	0.694	2e-26

>gi|157103345|ref|XP_001647938.1| cyclic-nucleotide-gated cation channel [Aedes aegypti] gi|108884770|gb|EAT48995.1| AAEL000014-PA [Aedes aegypti]

 Score =  128 bits (322), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/100 (58%), Positives = 70/100 (70%), Gaps = 2/100 (2%)

Query: 9   VGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68
           V D+G   +G   A +  R RR+     TVVNPD N YFYWL+++T  +LYNLWTLIVRQ
Sbjct: 42  VEDTGS--EGATDADKTARRRRRLKIPKTVVNPDENFYFYWLMVVTIGILYNLWTLIVRQ 99

Query: 69  SFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
           SFPELQ N +KFW  CD  TD   +LD++VQ RTGYLEQG
Sbjct: 100 SFPELQTNASKFWLSCDCLTDVVFILDVVVQLRTGYLEQG 139

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432282|ref|XP_002064152.1| GK20012 [Drosophila willistoni] gi|194160237|gb|EDW75138.1| GK20012 [Drosophila willistoni]

 Score =  128 bits (321), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/107 (55%), Positives = 72/107 (67%), Gaps = 8/107 (7%)

Query: 2   DTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNL 61
           DTG E   GD     D +    RR   ++++    +VVNPD N YFYWL+++T CVLYNL
Sbjct: 95  DTGSESASGDV----DKSVKRSRRRYLQKRR----SVVNPDENFYFYWLMMLTVCVLYNL 146

Query: 62  WTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
           WTLIVRQSFPELQ++   FW  CD  TD   +LDI+VQ RTGYLEQG
Sbjct: 147 WTLIVRQSFPELQQSVPTFWLVCDSITDVVFILDIIVQLRTGYLEQG 193

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050110|ref|XP_001859381.1| cyclic-nucleotide-gated cation channel [Culex quinquefasciatus] gi|167871677|gb|EDS35060.1| cyclic-nucleotide-gated cation channel [Culex quinquefasciatus]

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 57/100 (57%), Positives = 69/100 (69%), Gaps = 2/100 (2%)

Query: 9   VGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQ 68
           V D+G   +G   A +  R RR+     TVVNPD N YFYWL+ +T  +LYNLWTLIVRQ
Sbjct: 51  VEDTGS--EGATDADKTVRRRRRLKIPKTVVNPDENFYFYWLMTVTISILYNLWTLIVRQ 108

Query: 69  SFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
           SFPELQEN ++FW  CD  TD   ++D+ VQ RTGYLEQG
Sbjct: 109 SFPELQENASRFWLSCDCLTDFVFIVDVAVQLRTGYLEQG 148

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616418|ref|NP_001259571.1| CNG channel-like, isoform H [Drosophila melanogaster] gi|440216795|gb|AGB95413.1| CNG channel-like, isoform H [Drosophila melanogaster]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 176 IVQLRTGYLEQG 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442616416|ref|NP_001259570.1| CNG channel-like, isoform G [Drosophila melanogaster] gi|440216794|gb|AGB95412.1| CNG channel-like, isoform G [Drosophila melanogaster]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 176 IVQLRTGYLEQG 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45549131|ref|NP_511163.3| CNG channel-like, isoform C [Drosophila melanogaster] gi|45446960|gb|AAN09666.2| CNG channel-like, isoform C [Drosophila melanogaster]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 176 IVQLRTGYLEQG 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|45551460|ref|NP_727848.2| CNG channel-like, isoform B [Drosophila melanogaster] gi|45446959|gb|AAF48450.3| CNG channel-like, isoform B [Drosophila melanogaster]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 116 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 175

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 176 IVQLRTGYLEQG 187

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764484|ref|NP_001245691.1| CNG channel-like, isoform E [Drosophila melanogaster] gi|383293417|gb|AFH07405.1| CNG channel-like, isoform E [Drosophila melanogaster]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 233 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 292

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 293 IVQLRTGYLEQG 304

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386764482|ref|NP_001245690.1| CNG channel-like, isoform D [Drosophila melanogaster] gi|383293416|gb|AFH07404.1| CNG channel-like, isoform D [Drosophila melanogaster]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 218 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 277

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 278 IVQLRTGYLEQG 289

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195478813|ref|XP_002100662.1| GE16049 [Drosophila yakuba] gi|194188186|gb|EDX01770.1| GE16049 [Drosophila yakuba]

 Score =  122 bits (307), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/72 (69%), Positives = 58/72 (80%)

Query: 37  TVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
           +VVNPD N YFYWL+++T CVLYNLWTLIVRQSFPELQ++   FW  CD  TD   +LDI
Sbjct: 100 SVVNPDENFYFYWLMMLTVCVLYNLWTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDI 159

Query: 97  LVQFRTGYLEQG 108
           +VQ RTGYLEQG
Sbjct: 160 IVQLRTGYLEQG 171

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
FB|FBgn0263257	1853	cngl "CNG channel-like" [Droso	0.803	0.052	0.560	1.1e-24
ZFIN|ZDB-GENE-110408-39	639	cnga1 "cyclic nucleotide gated	0.655	0.125	0.437	7.9e-14
UNIPROTKB|F1NEW7	731	CNGA3 "Uncharacterized protein	0.581	0.097	0.507	9.8e-14
UNIPROTKB|Q90805	735	Q90805 "Cyclic nucleotide-gate	0.581	0.096	0.507	9.9e-14
UNIPROTKB|Q16281	694	CNGA3 "Cyclic nucleotide-gated	0.655	0.115	0.462	1.9e-13
UNIPROTKB|E9PF93	698	CNGA3 "Cyclic nucleotide-gated	0.655	0.114	0.462	1.9e-13
UNIPROTKB|Q90980	645	Q90980 "Cyclic nucleotide-gate	0.573	0.108	0.458	7.5e-13
RGD|621815	683	Cnga1 "cyclic nucleotide gated	0.680	0.121	0.406	8.2e-13
UNIPROTKB|F1LQN0	683	Cnga1 "cGMP-gated cation chann	0.680	0.121	0.406	8.2e-13
ZFIN|ZDB-GENE-090312-66	697	si:dkey-22i16.2 "si:dkey-22i16	0.573	0.100	0.513	8.4e-13

FB|FBgn0263257 cngl "CNG channel-like" [Drosophila melanogaster (taxid:7227)]

 Score = 297 (109.6 bits), Expect = 1.1e-24, P = 1.1e-24
 Identities = 60/107 (56%), Positives = 71/107 (66%)

Query:     2 DTGDEYEVGDSGQPDDGNCHAGRRPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNL 61
             DTG E   GD  +         RR R  +K+    +VVNPD N YFYWL+++T CVLYNL
Sbjct:    90 DTGSESASGDVDKS------VKRRRRYLQKR---RSVVNPDENFYFYWLMMLTVCVLYNL 140

Query:    62 WTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQG 108
             WTLIVRQSFPELQ++   FW  CD  TD   +LDI+VQ RTGYLEQG
Sbjct:   141 WTLIVRQSFPELQQSVPTFWLICDSMTDVVFILDIIVQLRTGYLEQG 187

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-110408-39 cnga1 "cyclic nucleotide gated channel alpha 1" [Danio rerio (taxid:7955)]

 Score = 189 (71.6 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 35/80 (43%), Positives = 51/80 (63%)

Query:    29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTT 88
             +++ +    VV+P  N+Y+ WL +ITC V+YN   +I R  F ELQ +    WFF DY +
Sbjct:   104 KKEPLKEIEVVDPAGNMYYNWLFVITCPVMYNWIFIIARACFEELQGDYLILWFFLDYLS 163

Query:    89 DTFIVLDILVQFRTGYLEQG 108
             D   +LD++ + RTGYLEQG
Sbjct:   164 DAVYLLDMVFRTRTGYLEQG 183

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1NEW7 CNGA3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 9.8e-14, P = 9.8e-14
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
             V++P SN+Y+ WL II   V YN   LI R  F ELQ +  K W F DY +D   V D+ 
Sbjct:   198 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 257

Query:    98 VQFRTGYLEQG 108
             V+FRTG+LEQG
Sbjct:   258 VRFRTGFLEQG 268

GO:0016021 "integral to membrane" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046549 "retinal cone cell development" evidence=IEA

UNIPROTKB|Q90805 Q90805 "Cyclic nucleotide-gated channel cone photoreceptor subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 9.9e-14, P = 9.9e-14
 Identities = 36/71 (50%), Positives = 45/71 (63%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL 97
             V++P SN+Y+ WL II   V YN   LI R  F ELQ +  K W F DY +D   V D+ 
Sbjct:   202 VIDPSSNMYYNWLTIIAAPVFYNWCMLICRACFDELQIDHIKLWLFLDYCSDIIYVFDMF 261

Query:    98 VQFRTGYLEQG 108
             V+FRTG+LEQG
Sbjct:   262 VRFRTGFLEQG 272

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046549 "retinal cone cell development" evidence=IEA

UNIPROTKB|Q16281 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 37/80 (46%), Positives = 47/80 (58%)

Query:    29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTT 88
             ++ K   + VV+P SNLY+ WL  I   V YN + LI R  F ELQ      W   DY+ 
Sbjct:   151 KKTKKKDAIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSA 210

Query:    89 DTFIVLDILVQFRTGYLEQG 108
             D   VLD+LV+ RTG+LEQG
Sbjct:   211 DVLYVLDVLVRARTGFLEQG 230

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030553 "cGMP binding" evidence=IEA

GO:0001750 "photoreceptor outer segment" evidence=IEA

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046549 "retinal cone cell development" evidence=IEA

GO:0006810 "transport" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0015276 "ligand-gated ion channel activity" evidence=TAS

UNIPROTKB|E9PF93 CNGA3 "Cyclic nucleotide-gated cation channel alpha-3" [Homo sapiens (taxid:9606)]

 Score = 186 (70.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 37/80 (46%), Positives = 47/80 (58%)

Query:    29 RRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTT 88
             ++ K   + VV+P SNLY+ WL  I   V YN + LI R  F ELQ      W   DY+ 
Sbjct:   155 KKTKKKDAIVVDPSSNLYYRWLTAIALPVFYNWYLLICRACFDELQSEYLMLWLVLDYSA 214

Query:    89 DTFIVLDILVQFRTGYLEQG 108
             D   VLD+LV+ RTG+LEQG
Sbjct:   215 DVLYVLDVLVRARTGFLEQG 234

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q90980 Q90980 "Cyclic nucleotide-gated channel rod photoreceptor subunit alpha" [Gallus gallus (taxid:9031)]

 Score = 180 (68.4 bits), Expect = 7.5e-13, P = 7.5e-13
 Identities = 33/72 (45%), Positives = 46/72 (63%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
             +++P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +    WF  DY +D   + D+
Sbjct:   109 IIDPAGNMYYNWLFCITMPVMYN-WTMIIARACFDELQNDYLAVWFIVDYVSDVIYIADM 167

Query:    97 LVQFRTGYLEQG 108
              V+ RTGYLEQG
Sbjct:   168 FVRTRTGYLEQG 179

GO:0005216 "ion channel activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

RGD|621815 Cnga1 "cyclic nucleotide gated channel alpha 1" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 35/86 (40%), Positives = 54/86 (62%)

Query:    25 RPRCRRKKVHHSTVV-NPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWF 82
             +P+ ++++     VV +P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +  ++W 
Sbjct:   134 KPKEKKEEEKKEVVVIDPSGNMYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWL 192

Query:    83 FCDYTTDTFIVLDILVQFRTGYLEQG 108
               DY +D   + D+ V+ RTGYLEQG
Sbjct:   193 IFDYVSDVVYLADMFVRTRTGYLEQG 218

GO:0001750 "photoreceptor outer segment" evidence=ISO

GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=TAS

GO:0005223 "intracellular cGMP activated cation channel activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007283 "spermatogenesis" evidence=IEP

GO:0007601 "visual perception" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0017071 "intracellular cyclic nucleotide activated cation channel complex" evidence=IDA

GO:0030553 "cGMP binding" evidence=IDA

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0043195 "terminal bouton" evidence=IDA

GO:0050896 "response to stimulus" evidence=IEA

GO:0051480 "cytosolic calcium ion homeostasis" evidence=IDA

GO:0051899 "membrane depolarization" evidence=IDA

UNIPROTKB|F1LQN0 Cnga1 "cGMP-gated cation channel alpha-1" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 8.2e-13, P = 8.2e-13
 Identities = 35/86 (40%), Positives = 54/86 (62%)

Query:    25 RPRCRRKKVHHSTVV-NPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWF 82
             +P+ ++++     VV +P  N+Y+ WL  IT  V+YN WT+I+ R  F ELQ +  ++W 
Sbjct:   134 KPKEKKEEEKKEVVVIDPSGNMYYNWLFCITLPVMYN-WTMIIARACFDELQSDYLEYWL 192

Query:    83 FCDYTTDTFIVLDILVQFRTGYLEQG 108
               DY +D   + D+ V+ RTGYLEQG
Sbjct:   193 IFDYVSDVVYLADMFVRTRTGYLEQG 218

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

ZFIN|ZDB-GENE-090312-66 si:dkey-22i16.2 "si:dkey-22i16.2" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 8.4e-13, P = 8.4e-13
 Identities = 37/72 (51%), Positives = 46/72 (63%)

Query:    38 VVNPDSNLYFYWLLIITCCVLYNLWTLIV-RQSFPELQENGAKFWFFCDYTTDTFIVLDI 96
             V+NP   LY+ WLLIIT  V+YN WT+I+ R  F ELQ      WF  DYT+D   + D+
Sbjct:   131 VINPAGLLYYQWLLIITFPVMYN-WTVIIARACFEELQHEYLLTWFLLDYTSDLLYLADM 189

Query:    97 LVQFRTGYLEQG 108
               + RTGYLEQG
Sbjct:   190 AFRARTGYLEQG 201

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q90805	CNG1_CHICK	No assigned EC number	0.5070	0.5819	0.0965	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
KOG0499|consensus	815		99.8
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.72
KOG0498|consensus	727		99.7
KOG0500|consensus	536		99.62
KOG0501|consensus	971		99.59
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	99.21

>KOG0499|consensus

Probab=99.80  E-value=4.5e-20  Score=159.70  Aligned_cols=88  Identities=27%  Similarity=0.605  Sum_probs=84.1

Q ss_pred             CCeEEcCCC-chHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHh-hhccceeEeCCeEee
Q psy1121          35 HSTVVNPDS-NLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDIL-VQFRTGYLEQGNNNN  112 (122)
Q Consensus        35 ~~~vIdP~s-~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~-l~frtgy~e~G~~V~  112 (122)
                      -+..|||++ ++|..|+++|+++.+||+|+||+|++||.+..++..+|+++||+||+||++||+ ++.|..|+.+|.+|.
T Consensus       216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG~~ik  295 (815)
T KOG0499|consen  216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGGDIIK  295 (815)
T ss_pred             CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCceEEE
Confidence            356899998 899999999999999999999999999999999999999999999999999998 599999999999999


Q ss_pred             chHHHHhhhC
Q psy1121         113 NHITYYERQL  122 (122)
Q Consensus       113 D~~~I~~r~~  122 (122)
                      |.+..++||+
T Consensus       296 ~kndtrk~Yl  305 (815)
T KOG0499|consen  296 DKNDTRKHYL  305 (815)
T ss_pred             echHHHHHHH
Confidence            9999999995

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.72  E-value=2.8e-17  Score=146.29  Aligned_cols=89  Identities=18%  Similarity=0.319  Sum_probs=79.8

Q ss_pred             cccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccceeEeC--Ce
Q psy1121          32 KVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQ--GN  109 (122)
Q Consensus        32 ~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtgy~e~--G~  109 (122)
                      .+.+.++|+|.++++.+|+.+++++++|++|++|++++|...  .....|.++|+++|++|++||+++|+|+|+++  |.
T Consensus        47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~--~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~  124 (823)
T PLN03192         47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNA--SPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQL  124 (823)
T ss_pred             cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCC--CCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcE
Confidence            467789999999999999999999999999999999999632  22346889999999999999999999999976  57


Q ss_pred             EeechHHHHhhhC
Q psy1121         110 NNNNHITYYERQL  122 (122)
Q Consensus       110 ~V~D~~~I~~r~~  122 (122)
                      +|+|+++|++||+
T Consensus       125 lV~d~~~I~~~Yl  137 (823)
T PLN03192        125 LVRDRKKIAVRYL  137 (823)
T ss_pred             EEeCHHHHHHHHH
Confidence            9999999999995

>KOG0498|consensus

Probab=99.70  E-value=3.5e-17  Score=144.87  Aligned_cols=91  Identities=21%  Similarity=0.311  Sum_probs=81.0

Q ss_pred             cccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhcccccccc-------CchhhhHHHHHHHHHHHHHHhhhcccee
Q psy1121          32 KVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQEN-------GAKFWFFCDYTTDTFIVLDILVQFRTGY  104 (122)
Q Consensus        32 ~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~-------~~~~w~~lD~~~DiifllDI~l~frtgy  104 (122)
                      .++..++|||.|+++..|+.+++++++|++|+.|+.++|+..+.+       ....|.++|.++|++|++||++||||+|
T Consensus        63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay  142 (727)
T KOG0498|consen   63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY  142 (727)
T ss_pred             ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence            455667999999999999999999999999999999999865432       3467999999999999999999999999


Q ss_pred             Ee-CC-eEeechHHHHhhhC
Q psy1121         105 LE-QG-NNNNNHITYYERQL  122 (122)
Q Consensus       105 ~e-~G-~~V~D~~~I~~r~~  122 (122)
                      +. ++ ++|.||++|++||+
T Consensus       143 v~~~s~elV~dpk~IA~rYl  162 (727)
T KOG0498|consen  143 VDPSSYELVDDPKKIAKRYL  162 (727)
T ss_pred             ECCCCceeeeCHHHHHHHHH
Confidence            95 35 59999999999996

>KOG0500|consensus

Probab=99.62  E-value=8e-17  Score=136.88  Aligned_cols=71  Identities=37%  Similarity=0.565  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccceeEeCCeEeechHHHHhhhC
Q psy1121          52 IITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGYLEQGNNNNNHITYYERQL  122 (122)
Q Consensus        52 vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtgy~e~G~~V~D~~~I~~r~~  122 (122)
                      +++++++||+|+++.|.+|++++..+...|+++|+++|++|++||++++||||+|+|++|+|.+|+++||.
T Consensus         2 ~vs~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqGllV~~~~Kl~~hY~   72 (536)
T KOG0500|consen    2 FVSLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQGLLVKDTSKLRKHYV   72 (536)
T ss_pred             eEEEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcCeeehhhHHHHHHHH
Confidence            46789999999999999999999888899999999999999999999999999999999999999999983

>KOG0501|consensus

Probab=99.59  E-value=5.5e-16  Score=134.82  Aligned_cols=95  Identities=16%  Similarity=0.255  Sum_probs=84.3

Q ss_pred             cccccc--ccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhcccee
Q psy1121          27 RCRRKK--VHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTGY  104 (122)
Q Consensus        27 ~~~r~~--~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtgy  104 (122)
                      ++-||+  |.++.+|-+++.|+-.|+++++++.+|.+|++|+-++|...+. ++..|+++|-+.|+||++||++||+|+|
T Consensus       196 PQYrQEaPKTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~-~~vs~lvvDSiVDVIF~vDIvLNFHTTF  274 (971)
T KOG0501|consen  196 PQYRQEAPKTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQR-NNVSWLVVDSIVDVIFFVDIVLNFHTTF  274 (971)
T ss_pred             hhhhhcCCCCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeeccccc-CceeEEEecchhhhhhhhhhhhhcceee
Confidence            344444  6678899999999999999999999999999999999985443 4588999999999999999999999999


Q ss_pred             E-eCCeEeechHHHHhhhC
Q psy1121         105 L-EQGNNNNNHITYYERQL  122 (122)
Q Consensus       105 ~-e~G~~V~D~~~I~~r~~  122 (122)
                      + -+|++|.||+-||.-|+
T Consensus       275 VGPgGEVvsdPkvIRmNYl  293 (971)
T KOG0501|consen  275 VGPGGEVVSDPKVIRMNYL  293 (971)
T ss_pred             ecCCCceecChhHHhHHHH
Confidence            9 57999999999998775

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=99.21  E-value=8.2e-12  Score=83.38  Aligned_cols=61  Identities=31%  Similarity=0.482  Sum_probs=52.1

Q ss_pred             CCCCCCCCccC---CC----CCccccccccCCeEEcCCCchHHHHHHHHHHHHHHHHHHhhhhhcccc
Q psy1121          12 SGQPDDGNCHA---GR----RPRCRRKKVHHSTVVNPDSNLYFYWLLIITCCVLYNLWTLIVRQSFPE   72 (122)
Q Consensus        12 ~~~~~~~~~~~---~~----~~~~~r~~~~~~~vIdP~s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~   72 (122)
                      -.||..++-..   |+    .+|+.|+++.+.++|||.|.++.+|++++++.++||++++|++++|..
T Consensus         5 ~~~p~~nk~sl~~f~S~~ai~~E~~R~~~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~   72 (77)
T PF08412_consen    5 LLQPGDNKFSLRVFGSKKAIEKEKERQRSSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFS   72 (77)
T ss_pred             hhccccCHHHHHHHccHHHHHHHHHHHhcCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEec
Confidence            45777777322   55    368888889999999999999999999999999999999999999973

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	96.9
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	92.8

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=96.90  E-value=0.0011  Score=49.17  Aligned_cols=56  Identities=11%  Similarity=0.053  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhccccccccCchhhhHHHHHHHHHHHHHHhhhccce
Q psy1121          47 FYWLLIITCCVLYNLWTLIVRQSFPELQENGAKFWFFCDYTTDTFIVLDILVQFRTG  103 (122)
Q Consensus        47 ~~W~~vv~~~vlYn~i~iP~rlaF~~~~~~~~~~w~~lD~~~DiifllDI~l~frtg  103 (122)
                      ..|+.++.+++++|.+++++....+ .+.+....|..+|++++++|.+|+++++.++
T Consensus         8 ~~f~~~i~~lil~~~~~~~~~~~~~-~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~   63 (223)
T 1orq_C            8 PLVELGVSYAALLSVIVVVVECTMQ-LSGEYLVRLYLVDLILVIILWADYAYRAYKS   63 (223)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHH-HTTCTTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3589999999999999987764432 3344567888999999999999999999986

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=92.80  E-value=0.17  Score=42.39  Aligned_cols=63  Identities=13%  Similarity=0.257  Sum_probs=46.9

Q ss_pred             cCC-CchHHHHHHHHHHHHHHHHHHhhhhhccccccc--------------------------cCchhhhHHHHHHHHHH
Q psy1121          40 NPD-SNLYFYWLLIITCCVLYNLWTLIVRQSFPELQE--------------------------NGAKFWFFCDYTTDTFI   92 (122)
Q Consensus        40 dP~-s~~~~~W~~vv~~~vlYn~i~iP~rlaF~~~~~--------------------------~~~~~w~~lD~~~Diif   92 (122)
                      +|+ |..-.++..+++++++-|++++.+.- ++..+.                          .....|..+|+++.++|
T Consensus       174 ~p~sS~~a~~f~~~~i~~Illsii~~~leT-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ie~i~~~iF  252 (514)
T 2r9r_B          174 YPESSGPARIIAIVSVMVILISIVSFCLET-LPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDPFFIVETLCIIWF  252 (514)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccccccchhhhHHHHHHHHHHHHH
Confidence            565 45678889999999999999887653 322111                          13456889999999999


Q ss_pred             HHHHhhhccce
Q psy1121          93 VLDILVQFRTG  103 (122)
Q Consensus        93 llDI~l~frtg  103 (122)
                      .+|+++++.+.
T Consensus       253 tiE~ilR~~~~  263 (514)
T 2r9r_B          253 SFEFLVRFFAC  263 (514)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhC
Confidence            99999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00