Psyllid ID: psy13018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------
Protein Sequence
MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEITSDQGD
Secondary Structure (PSIPRED)
ccccHHcHHHHHHccccccccccccccccccccccccccccccHHHHHcccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHccHHHHHHEEEEccccccccccccccccccccccccccHHHHHHHcccccccHHHHccccccc
Coil and Loop (DISEMBL)
MNDLEEDVLYRQNvniykagpeipvdandintededpdapriTLEEMlddltiddvdmeeeitsdqgd
Flexible Loop (DISEMBL)
MNDLEEDVLYRQNvniykagpeipvdandinteDEDPDAPRITLEemlddltiddvDMEEEITSDQGD
Low Complexity Region (SEG)
MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEITSDQGD
Disordered region (IsUnstruct)
*******VLYRQNVNIYKAG************************************************
Disordered Region (DISOPRED)
MNDLEEDVLYRQNVNIYKAGP*******************RITLEEMLDDLTIDD*************
Disordered Region (DISEMBL)
MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME*********
Disordered Region (DISPRO)
MNDLEEDVLYRQNVNIYKAGPEIPV**********DPDAPRITLEEMLDDLTIDD*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEITSDQGD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	68	2.2.26 [Sep-21-2011]
Q5RC82	503	60S ribosomal export prot	yes	N/A	0.852	0.115	0.484	0.0001
Q96D46	503	60S ribosomal export prot	yes	N/A	0.852	0.115	0.484	0.0001
Q5BLF0	505	60S ribosomal export prot	yes	N/A	0.632	0.085	0.425	0.0003
Q08DS5	503	60S ribosomal export prot	yes	N/A	0.691	0.093	0.528	0.0003
Q6P2Z6	504	60S ribosomal export prot	yes	N/A	0.691	0.093	0.509	0.0003
Q99L48	503	60S ribosomal export prot	yes	N/A	0.852	0.115	0.468	0.0003

>sp|Q5RC82|NMD3_PONAB 60S ribosomal export protein NMD3 OS=Pongo abelii GN=NMD3 PE=2 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
           + DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I      E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496

Query: 61  EITS 64
           E  S
Sbjct: 497 EGAS 500

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.
Pongo abelii (taxid: 9601)

>sp|Q96D46|NMD3_HUMAN 60S ribosomal export protein NMD3 OS=Homo sapiens GN=NMD3 PE=1 SV=1

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 6/64 (9%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
           + DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I      E
Sbjct: 443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496

Query: 61  EITS 64
           E  S
Sbjct: 497 EGAS 500

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Homo sapiens (taxid: 9606)

>sp|Q5BLF0|NMD3_DANRE 60S ribosomal export protein NMD3 OS=Danio rerio GN=nmd3 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 4/47 (8%)

Query: 9   LYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
           + R+N+NI++   +IPV+ +D     +D  APRI+L EML+DL++ D
Sbjct: 451 MLRKNINIFRDASKIPVEESDT----DDDGAPRISLAEMLEDLSLSD 493

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Danio rerio (taxid: 7955)

>sp|Q08DS5|NMD3_BOVIN 60S ribosomal export protein NMD3 OS=Bos taurus GN=NMD3 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/53 (52%), Positives = 37/53 (69%), Gaps = 6/53 (11%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
           + DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I
Sbjct: 443 LEDLEEDEAIRKNVNIYRDS-TIPVESD---TDDEG--APRISLAEMLEDLHI 489

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Bos taurus (taxid: 9913)

>sp|Q6P2Z6|NMD3_XENTR 60S ribosomal export protein NMD3 OS=Xenopus tropicalis GN=nmd3 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 6/53 (11%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
           + DLEED + R+NVNIYK    +PV++   +T++E   APRI+L EML+DL I
Sbjct: 443 LEDLEEDEVIRKNVNIYK-NANLPVES---DTDEE--GAPRISLAEMLEDLHI 489

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Xenopus tropicalis (taxid: 8364)

>sp|Q99L48|NMD3_MOUSE 60S ribosomal export protein NMD3 OS=Mus musculus GN=Nmd3 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 6/64 (9%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
           + DLEED   R++VNIY+    IPV+++   T+DE   APRI+L EML+DL I      E
Sbjct: 443 LEDLEEDEAIRKHVNIYRDA-TIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496

Query: 61  EITS 64
           E  S
Sbjct: 497 EGAS 500

Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
427789331	511	Putative 60s ribosomal export protein nm	0.779	0.103	0.620	9e-10
357604777	467	nonsense-mediated mRNA 3 [Danaus plexipp	0.808	0.117	0.583	1e-09
346471561	510	hypothetical protein [Amblyomma maculatu	0.779	0.103	0.620	1e-09
157133750	510	nonsense-mediated mrna decay protein [Ae	0.823	0.109	0.606	5e-08
94468868	510	NMD protein [Aedes aegypti]	0.823	0.109	0.606	6e-08
307202686	503	60S ribosomal export protein NMD3 [Harpe	0.808	0.109	0.524	1e-07
312371222	502	hypothetical protein AND_22389 [Anophele	0.794	0.107	0.566	3e-07
391344979	507	PREDICTED: 60S ribosomal export protein	0.808	0.108	0.516	7e-07
241856628	508	NMD protein affecting ribosome stability	0.779	0.104	0.5	7e-07
158294075	510	AGAP005375-PA [Anopheles gambiae str. PE	0.794	0.105	0.566	1e-06

>gi|427789331|gb|JAA60117.1| Putative 60s ribosomal export protein nmd3 [Rhipicephalus pulchellus]

 Score = 67.8 bits (164), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 5/58 (8%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
           + DLEED  YRQNVNIYK   +I VD     T+DED DAPRITL+EMLDDL ++D  M
Sbjct: 447 LEDLEEDAAYRQNVNIYKDNDKIAVD-----TDDEDGDAPRITLQEMLDDLQLEDDPM 499

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604777|gb|EHJ64316.1| nonsense-mediated mRNA 3 [Danaus plexippus]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 43/60 (71%), Gaps = 5/60 (8%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
           ++DLEED   RQN+NI+K   +IPVD ++I     DP  PRITL EMLDDL I+DVDM E
Sbjct: 412 LDDLEEDPALRQNINIFKDSNKIPVDTDEI-----DPSLPRITLAEMLDDLAIEDVDMTE 466

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346471561|gb|AEO35625.1| hypothetical protein [Amblyomma maculatum]

 Score = 67.4 bits (163), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 42/58 (72%), Gaps = 5/58 (8%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
           + DLEED  YRQNVNIYK   +I VD     T+DED DAPRITL+EMLDDL ++D  M
Sbjct: 447 LEDLEEDAGYRQNVNIYKDSDKIAVD-----TDDEDGDAPRITLQEMLDDLQLEDDPM 499

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157133750|ref|XP_001662996.1| nonsense-mediated mrna decay protein [Aedes aegypti] gi|108881501|gb|EAT45726.1| AAEL003039-PA [Aedes aegypti]

 Score = 61.6 bits (148), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 5/61 (8%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
           + DLEED   RQNVNI+K   +I PVD ND+     DP  PRITLEEMLDDL +DDV+M 
Sbjct: 452 LEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVLDDVEMT 507

Query: 60  E 60
           E
Sbjct: 508 E 508

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|94468868|gb|ABF18283.1| NMD protein [Aedes aegypti]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 43/61 (70%), Gaps = 5/61 (8%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEI-PVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
           + DLEED   RQNVNI+K   +I PVD ND+     DP  PRITLEEMLDDL +DDV+M 
Sbjct: 452 LEDLEEDPDLRQNVNIFKDNSKIIPVDVNDM----PDPSVPRITLEEMLDDLVLDDVEMT 507

Query: 60  E 60
           E
Sbjct: 508 E 508

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202686|gb|EFN81992.1| 60S ribosomal export protein NMD3 [Harpegnathos saltator]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/61 (52%), Positives = 44/61 (72%), Gaps = 6/61 (9%)

Query: 1   MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
           +++LEED   RQN+NI++    +IPVD N+I     DP  P+ITLEEMLDDL ++DV+M 
Sbjct: 447 LDELEEDPELRQNINIFRDPRKQIPVDTNEI-----DPSIPQITLEEMLDDLVLEDVEMS 501

Query: 60  E 60
           E
Sbjct: 502 E 502

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312371222|gb|EFR19462.1| hypothetical protein AND_22389 [Anopheles darlingi]

 Score = 59.3 bits (142), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 6/60 (10%)

Query: 1   MNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
           + DLEED   RQNVNI+K     ++PVD ND+    +DP  PRITLEEMLDDL +DD +M
Sbjct: 444 LEDLEEDPELRQNVNIFKDSKRQQMPVDTNDM----DDPSVPRITLEEMLDDLVLDDAEM 499

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391344979|ref|XP_003746771.1| PREDICTED: 60S ribosomal export protein NMD3 [Metaseiulus occidentalis]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/62 (51%), Positives = 40/62 (64%), Gaps = 7/62 (11%)

Query: 3   DLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEI 62
           DLEED   RQNVNIYK       D+  I  E E  DAP I+L+EMLDD+T+DD  M++  
Sbjct: 447 DLEEDPALRQNVNIYK-------DSEKIAVESEAGDAPHISLQEMLDDMTLDDEAMDDAD 499

Query: 63  TS 64
           T+
Sbjct: 500 TA 501

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241856628|ref|XP_002416064.1| NMD protein affecting ribosome stability and mRNA decay, putative [Ixodes scapularis] gi|215510278|gb|EEC19731.1| NMD protein affecting ribosome stability and mRNA decay, putative [Ixodes scapularis]

 Score = 57.8 bits (138), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/58 (50%), Positives = 41/58 (70%), Gaps = 5/58 (8%)

Query: 1   MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
           + +LEED +YRQNVN+Y    ++ VD     T+DED + P+ITL+EMLDDL ++D  M
Sbjct: 447 LEELEEDAVYRQNVNVYLDREKLAVD-----TDDEDGELPKITLQEMLDDLCLEDDPM 499

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294075|ref|XP_315383.4| AGAP005375-PA [Anopheles gambiae str. PEST] gi|157015396|gb|EAA11292.5| AGAP005375-PA [Anopheles gambiae str. PEST]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 42/60 (70%), Gaps = 6/60 (10%)

Query: 1   MNDLEEDVLYRQNVNIYK--AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDM 58
           + DLEED   RQNVNI+K     +IPVD ND+    +DP  PRITLEEMLDDL ++D +M
Sbjct: 451 LEDLEEDPELRQNVNIFKDKNKQQIPVDTNDM----DDPSVPRITLEEMLDDLVLEDEEM 506

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	68
WB|WBGene00012030	513	T25G3.3 [Caenorhabditis elegan	0.926	0.122	0.478	1.7e-08
CGD|CAL0001704	520	NMD3 [Candida albicans (taxid:	0.852	0.111	0.454	3.7e-08
ZFIN|ZDB-GENE-050320-149	505	nmd3 "NMD3 homolog (S. cerevis	0.75	0.100	0.472	1.6e-07
UNIPROTKB|I3LDB7	507	NMD3 "Uncharacterized protein"	0.897	0.120	0.492	3.3e-07
SGD|S000001213	518	NMD3 "Protein involved in nucl	0.867	0.113	0.396	5.6e-07
UNIPROTKB|C9JA08	529	NMD3 "60S ribosomal export pro	0.852	0.109	0.484	5.4e-06
UNIPROTKB|Q96D46	503	NMD3 "60S ribosomal export pro	0.794	0.107	0.508	6.4e-06
RGD|1308468	503	Nmd3 "NMD3 homolog (S. cerevis	0.794	0.107	0.491	6.4e-06
UNIPROTKB|E1BTL9	504	NMD3 "Uncharacterized protein"	0.720	0.097	0.490	6.4e-06
UNIPROTKB|Q08DS5	503	NMD3 "60S ribosomal export pro	0.691	0.093	0.528	1.3e-05

WB|WBGene00012030 T25G3.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 138 (53.6 bits), Expect = 1.7e-08, P = 1.7e-08
 Identities = 33/69 (47%), Positives = 44/69 (63%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIP-VDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
             M D+EED L R+ +NIYK   + P VD +D   ED  PDAP  TL EMLDDL  DD +M+
Sbjct:   446 MEDIEEDALMREKINIYKDAEKGPNVDGDD--AEDH-PDAP--TLAEMLDDLKFDDEEMK 500

Query:    60 EEITSDQGD 68
             E  +++  +
Sbjct:   501 EAESAEDDE 509

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0071688 "striated muscle myosin thick filament assembly" evidence=IMP

CGD|CAL0001704 NMD3 [Candida albicans (taxid:5476)]

 Score = 135 (52.6 bits), Expect = 3.7e-08, P = 3.7e-08
 Identities = 30/66 (45%), Positives = 44/66 (66%)

Query:     1 MNDLEEDVLYRQNVNIYKAG---PEIPVDANDINTEDEDPD--APRITLEEMLD---DLT 52
             + +LEED   RQ +N+YKAG   P++  + +D+N EDED D  AP I ++E+LD   D+T
Sbjct:   454 LQELEEDDELRQTINLYKAGENQPQVSRNHDDMNDEDEDDDEDAPEIGIDELLDELDDMT 513

Query:    53 IDDVDM 58
             +DD  M
Sbjct:   514 LDDTPM 519

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0043023 "ribosomal large subunit binding" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IEA

ZFIN|ZDB-GENE-050320-149 nmd3 "NMD3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 26/55 (47%), Positives = 41/55 (74%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
             + DLEED + R+N+NI++   +IPV+ +D  T+D+   APRI+L EML+DL++ D
Sbjct:   443 LEDLEEDEMLRKNINIFRDASKIPVEESD--TDDDG--APRISLAEMLEDLSLSD 493

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

UNIPROTKB|I3LDB7 NMD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 126 (49.4 bits), Expect = 3.3e-07, P = 3.3e-07
 Identities = 33/67 (49%), Positives = 42/67 (62%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
             + DLEED   R+NVNIY+  P IPV+++   T+DE   APRI+L EML+DL I      E
Sbjct:   443 LEDLEEDEAIRKNVNIYR-DPTIPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496

Query:    61 EITSDQG 67
             E  S  G
Sbjct:   497 EARSAPG 503

GO:0005730 "nucleolus" evidence=IEA

SGD|S000001213 NMD3 "Protein involved in nuclear export of the large ribosomal subunit" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 124 (48.7 bits), Expect = 5.6e-07, P = 5.6e-07
 Identities = 25/63 (39%), Positives = 45/63 (71%)

Query:     1 MNDLEEDVLYRQNVNIYK-AGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDME 59
             + +LEED   RQ+VN+YK     +P + ++++ EDED DAP+I ++E+LD+L  D++ +E
Sbjct:   450 LQELEEDAELRQSVNLYKNREANVPPEEHEMD-EDEDEDAPQINIDELLDEL--DEMTLE 506

Query:    60 EEI 62
             + +
Sbjct:   507 DGV 509

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0043023 "ribosomal large subunit binding" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000055 "ribosomal large subunit export from nucleus" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|C9JA08 NMD3 "60S ribosomal export protein NMD3" [Homo sapiens (taxid:9606)]

 Score = 115 (45.5 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 31/64 (48%), Positives = 40/64 (62%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEE 60
             + DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I      E
Sbjct:   443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496

Query:    61 EITS 64
             E  S
Sbjct:   497 EAKS 500

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|Q96D46 NMD3 "60S ribosomal export protein NMD3" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 31/61 (50%), Positives = 40/61 (65%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-DVDME 59
             + DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I  D   E
Sbjct:   443 LEDLEEDEAIRKNVNIYRDSA-IPVESD---TDDEG--APRISLAEMLEDLHISQDATGE 496

Query:    60 E 60
             E
Sbjct:   497 E 497

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

RGD|1308468 Nmd3 "NMD3 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 30/61 (49%), Positives = 40/61 (65%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTID-DVDME 59
             + DLEED   R+NVNIY+    +PV+++   T+DE   APRI+L EML+DL I  D   E
Sbjct:   443 LEDLEEDETIRKNVNIYRDST-VPVESD---TDDEG--APRISLAEMLEDLRISQDATGE 496

Query:    60 E 60
             E
Sbjct:   497 E 497

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1BTL9 NMD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 114 (45.2 bits), Expect = 6.4e-06, P = 6.4e-06
 Identities = 27/55 (49%), Positives = 39/55 (70%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDD 55
             + DLEED   R+NVNIY+   +IPV+++   T+D+   APRI+L EML+DL I +
Sbjct:   443 LEDLEEDEAIRKNVNIYR-NADIPVESD---TDDDG--APRISLAEMLEDLHISE 491

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q08DS5 NMD3 "60S ribosomal export protein NMD3" [Bos taurus (taxid:9913)]

 Score = 111 (44.1 bits), Expect = 1.3e-05, P = 1.3e-05
 Identities = 28/53 (52%), Positives = 37/53 (69%)

Query:     1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTI 53
             + DLEED   R+NVNIY+    IPV+++   T+DE   APRI+L EML+DL I
Sbjct:   443 LEDLEEDEAIRKNVNIYRDST-IPVESD---TDDEG--APRISLAEMLEDLHI 489

GO:0005737 "cytoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q08DS5	NMD3_BOVIN	No assigned EC number	0.5283	0.6911	0.0934	yes	N/A
Q6P2Z6	NMD3_XENTR	No assigned EC number	0.5094	0.6911	0.0932	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	68
KOG2613|consensus	502		99.37

>KOG2613|consensus

Probab=99.37  E-value=2e-13  Score=106.14  Aligned_cols=57  Identities=39%  Similarity=0.601  Sum_probs=44.4

Q ss_pred             CccchhCHHHHHhcccccCCCCCCCCCCCCCCCCCCCCCCCCCHHHhhccCCCCCccchhhh
Q psy13018          1 MNDLEEDVLYRQNVNIYKAGPEIPVDANDINTEDEDPDAPRITLEEMLDDLTIDDVDMEEEI   62 (68)
Q Consensus         1 L~dLEED~ElR~~inlYK~~~~~~~~~~~~~~~~~d~d~P~I~LdELLDdl~l~d~~~~ee~   62 (68)
                      |++||||++||++|||||++.+.+.     .+.++++++|+|+|+|||++|++...++++.|
T Consensus       439 ledlEEd~elr~~vnlyrd~~~~~~-----~d~d~~ed~p~i~ldElLedl~~~~~e~~~~~  495 (502)
T KOG2613|consen  439 LEDLEEDPELRQGVNLYRDKEKPTE-----SDTDDAEDAPQITLDELLEDLKLSFEEDDEDG  495 (502)
T ss_pred             HHhhhcCHHHHhcceeeeccCCCCc-----cccccccCCCCCCHHHHHhhhhcchhhcccCC
Confidence            6899999999999999999887322     22233488999999999999987765554443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00