Psyllid ID: psy13262

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
Protein Sequence
MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI
Secondary Structure (PSIPRED)
ccHHHHccccccccccEEEEEEEcccccccccEEEEEEEccccccccHHHccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccccEEEccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHcccccccEEEEEEEEcccccccccEEEEEEccccccHHHHHcccccccEEEEEEEEccccccccccEEEEEEEEEcccccccccEEEEcccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccEEEcccccccEEEEEcccccEEccccccccccEEEccccccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MNKQVFQSfipddkpitAIAVIEDiqkcpsgytvisktvdqdtdaDMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICiineketppdgfCLIARTldsdqgqicerggvvdykpqqsnntifSQRNILKDMyqqgvcvptflgleephpyisaleslypcatgdqtyipnstvigrckedvesggegnrkptvllltgpnmggkstVMRQLGLITILAQMENPQLI
Flexible Loop (DISEMBL)
mnkqvfqsfipddkpiTAIAVIEdiqkcpsgYTVISKtvdqdtdadMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERggvvdykpqqsnNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEdvesggegnrkptVLLLTGPNMGGKSTVMRQLGLITIlaqmenpqli
Low Complexity Region (SEG)
MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI
Disordered region (IsUnstruct)
*******SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCK*************TVLLLTGPNMGGKSTVMRQLGLITILA********
Disordered Region (DISOPRED)
***********DDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDV*****GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL*
Disordered Region (DISEMBL)
MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKE********NRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI
Disordered Region (DISPRO)
*NKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCK**********RKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMYQQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	229	2.2.26 [Sep-21-2011]
P52701	1360	DNA mismatch repair prote	yes	N/A	0.344	0.058	0.438	3e-11
P54276	1358	DNA mismatch repair prote	yes	N/A	0.362	0.061	0.428	5e-11
Q9VUM0	1190	Probable DNA mismatch rep	no	N/A	0.327	0.063	0.409	3e-10
Q9H7P6	319	Multivesicular body subun	no	N/A	0.462	0.332	0.293	8e-09
Q6KAU4	317	Multivesicular body subun	no	N/A	0.458	0.331	0.296	1e-08
O04716	1324	DNA mismatch repair prote	yes	N/A	0.349	0.060	0.375	5e-08
O74502	1254	DNA mismatch repair prote	yes	N/A	0.305	0.055	0.360	1e-07
A6RPB6	1133	DNA mismatch repair prote	N/A	N/A	0.296	0.060	0.402	2e-07
A7EC69	1130	DNA mismatch repair prote	N/A	N/A	0.296	0.060	0.391	2e-07
Q65JE2	869	DNA mismatch repair prote	yes	N/A	0.187	0.049	0.464	1e-06

>sp|P52701|MSH6_HUMAN DNA mismatch repair protein Msh6 OS=Homo sapiens GN=MSH6 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 10/89 (11%)

Query: 139  VCVPTFLGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKP 194
            +C P  L  E+  P++    S +PC T    GD  +IPN  +IG C+E+ +  G    K 
Sbjct: 1074 MCRPVILLPEDTPPFLELKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEQENG----KA 1127

Query: 195  TVLLLTGPNMGGKSTVMRQLGLITILAQM 223
              +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 1128 YCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1156

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs, and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair.
Homo sapiens (taxid: 9606)

>sp|P54276|MSH6_MOUSE DNA mismatch repair protein Msh6 OS=Mus musculus GN=Msh6 PE=1 SV=3

 Score = 68.2 bits (165), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 15/98 (15%)

Query: 135  YQQG----VCVPTF-LGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVE 185
            Y QG    +C P   L  E+ HP++    S +PC T    GD  +IPN  +IG C+E+ E
Sbjct: 1063 YSQGGDGPMCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDD-FIPNDILIG-CEEEAE 1120

Query: 186  SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
              G    K   +L+TGPNMGGKST++RQ GL+ ++AQ+
Sbjct: 1121 EHG----KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQL 1154

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with MSH2 to form MutS alpha, which binds to DNA mismatches thereby initiating DNA repair. When bound, MutS alpha bends the DNA helix and shields approximately 20 base pairs, and recognizes single base mismatches and dinucleotide insertion-deletion loops (IDL) in the DNA. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions. The ATPase activity associated with MutS alpha regulates binding similar to a molecular switch: mismatched DNA provokes ADP-->ATP exchange, resulting in a discernible conformational transition that converts MutS alpha into a sliding clamp capable of hydrolysis-independent diffusion along the DNA backbone. This transition is crucial for mismatch repair. MutS alpha may also play a role in DNA homologous recombination repair.

Mus musculus (taxid: 10090)

>sp|Q9VUM0|MSH6_DROME Probable DNA mismatch repair protein Msh6 OS=Drosophila melanogaster GN=Msh6 PE=1 SV=2

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 49/88 (55%), Gaps = 13/88 (14%)

Query: 136 QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPT 195
           Q  +CVP  +  +   P+I   E  +PCA    TYIPN   +G   E             
Sbjct: 906 QMVICVPELVS-DADQPFIQLEEGYHPCANA-STYIPNGLELGTASE-----------AP 952

Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQM 223
           + LLTGPNMGGKST+MR++GL+ I+AQ+
Sbjct: 953 LSLLTGPNMGGKSTLMREVGLLVIMAQI 980

Involved in post-replicative DNA-mismatch repair.

Drosophila melanogaster (taxid: 7227)

>sp|Q9H7P6|MB12B_HUMAN Multivesicular body subunit 12B OS=Homo sapiens GN=MVB12B PE=1 SV=2

 Score = 60.8 bits (146), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 3/109 (2%)

Query: 15  PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
           PIT + V+    + P+GY V+++T D   DAD+W++  F  + TRYLC +++ S     +
Sbjct: 49  PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 107

Query: 73  DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSN 121
             ++ ++ +I+ K+T P GF  I  T+D+ +    ++   + + P+ S 
Sbjct: 108 GNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDST 156

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies.

Homo sapiens (taxid: 9606)

>sp|Q6KAU4|MB12B_MOUSE Multivesicular body subunit 12B OS=Mus musculus GN=Mvb12b PE=2 SV=2

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 62/108 (57%), Gaps = 3/108 (2%)

Query: 15  PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
           PIT + V+    + P+GY V+++T D   DAD+W++  F  + TRYLC +++ S     +
Sbjct: 47  PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 105

Query: 73  DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQS 120
             ++ ++ +I+ K+T P GF  I  T+D+ +    ++   + + P+ S
Sbjct: 106 GNVLVDMKLIDVKDTLPVGFIPIQETVDTQEVVFRKKRLCIKFIPRDS 153

Component of the ESCRT-I complex, a regulator of vesicular trafficking process. Required for the sorting of endocytic ubiquitinated cargos into multivesicular bodies.

Mus musculus (taxid: 10090)

>sp|O04716|MSH6_ARATH DNA mismatch repair protein MSH6 OS=Arabidopsis thaliana GN=MSH6 PE=1 SV=2

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 16/96 (16%)

Query: 133  DMYQQGVCVPTFLG-LEEPHPYISALESLYPCATGDQ----TYIPNSTVIGRCKEDVESG 187
            D Y+   C P   G   +  P++SA    +P   GD     +++PN+  IG         
Sbjct: 1021 DSYEGVRCRPVISGSTSDGVPHLSATGLGHPVLRGDSLGRGSFVPNNVKIG--------- 1071

Query: 188  GEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
              G  K + +LLTGPNMGGKST++RQ+ L  ILAQ+
Sbjct: 1072 --GAEKASFILLTGPNMGGKSTLLRQVCLAVILAQI 1105

Involved in post-replicative DNA-mismatch repair.

Arabidopsis thaliana (taxid: 3702)

>sp|O74502|MSH6_SCHPO DNA mismatch repair protein msh6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=msh6 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 16/86 (18%)

Query: 140  CVPTFLGLEEPHPYISALESLYPC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVL 197
            C P  +  ++ H Y   L   +PC  A+   T++PN  V+G         GE    P ++
Sbjct: 975  CRPEIIEQKDGHLYFEELR--HPCINASAASTFVPNDVVLG---------GES---PNMI 1020

Query: 198  LLTGPNMGGKSTVMRQLGLITILAQM 223
            +LTGPNM GKST++RQ+ +  I+AQ+
Sbjct: 1021 VLTGPNMAGKSTLLRQVCIAVIMAQL 1046

Involved in post-replicative DNA-mismatch repair. Has a role towards base-base mispairs and insertion-deletion loops.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|A6RPB6|MSH3_BOTFB DNA mismatch repair protein msh3 OS=Botryotinia fuckeliana (strain B05.10) GN=msh3 PE=3 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/92 (40%), Positives = 46/92 (50%), Gaps = 24/92 (26%)

Query: 138 GVCVPTFLGLEE------PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGN 191
           G C PTF    E       HP +   E L P A     YIPN T +    +   +     
Sbjct: 842 GYCKPTFTSSTEISVIGGRHPMV---EQLLPSA-----YIPNDTSLSTSPDHTRA----- 888

Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
                LLLTGPNMGGKS+ +RQ+ LI+ILAQ+
Sbjct: 889 -----LLLTGPNMGGKSSYVRQVALISILAQI 915

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with msh2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. Msh3 provides substrate-binding and substrate-specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions.

Botryotinia fuckeliana (strain B05.10) (taxid: 332648)

>sp|A7EC69|MSH3_SCLS1 DNA mismatch repair protein msh3 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=msh3 PE=3 SV=1

 Score = 55.8 bits (133), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 24/92 (26%)

Query: 138 GVCVPTFLGLEE------PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGN 191
           G C PTF    E       HP +   E L P      TYIPN T +    ++  +     
Sbjct: 839 GYCKPTFTSTTEISVVGGRHPMV---EQLLP-----STYIPNDTSLSTDPDNTRA----- 885

Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
                LL+TGPNMGGKS+ +RQ+ LI+ILAQ+
Sbjct: 886 -----LLITGPNMGGKSSYVRQVALISILAQI 912

Component of the post-replicative DNA mismatch repair system (MMR). Heterodimerizes with msh2 to form MutS beta, which binds to DNA mismatches thereby initiating DNA repair. Msh3 provides substrate-binding and substrate-specificity to the complex. When bound, the MutS beta heterodimer bends the DNA helix and shields approximately 20 base pairs. Acts mainly to repair insertion-deletion loops (IDLs) from 2 to 13 nucleotides in size, but can also repair base-base and single insertion-deletion mismatches that occur during replication. After mismatch binding, forms a ternary complex with the MutL alpha heterodimer, which is thought to be responsible for directing the downstream MMR events, including strand discrimination, excision, and resynthesis. ATP binding and hydrolysis play a pivotal role in mismatch repair functions.

Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (taxid: 665079)

>sp|Q65JE2|MUTS_BACLD DNA mismatch repair protein MutS OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mutS PE=3 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/56 (46%), Positives = 37/56 (66%), Gaps = 13/56 (23%)

Query: 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
           Q+Y+PNS  +G+ ++             +LL+TGPNM GKST MRQ+ LI+ILAQ+
Sbjct: 582 QSYVPNSCEMGKGRQ-------------MLLITGPNMSGKSTYMRQMALISILAQI 624

This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.

Bacillus licheniformis (strain DSM 13 / ATCC 14580) (taxid: 279010)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
193659736	287	PREDICTED: hypothetical protein LOC10016	0.462	0.369	0.631	2e-29
307211218	324	Protein FAM125B [Harpegnathos saltator]	0.550	0.388	0.477	3e-27
218749841	324	uncharacterized protein LOC551408 [Apis	0.419	0.296	0.575	5e-26
380013740	351	PREDICTED: LOW QUALITY PROTEIN: multives	0.419	0.273	0.575	5e-26
194477810	193	TPA_exp: unknown [Apis mellifera] gi|218	0.419	0.497	0.575	8e-26
340729074	329	PREDICTED: multivesicular body subunit 1	0.419	0.291	0.565	2e-25
322801820	328	hypothetical protein SINV_01966 [Solenop	0.541	0.378	0.469	2e-25
350401490	329	PREDICTED: multivesicular body subunit 1	0.419	0.291	0.565	4e-25
332021467	352	Multivesicular body subunit 12B [Acromyr	0.436	0.284	0.518	4e-25
383857164	329	PREDICTED: multivesicular body subunit 1	0.419	0.291	0.545	6e-25

>gi|193659736|ref|XP_001943561.1| PREDICTED: hypothetical protein LOC100164562 [Acyrthosiphon pisum]

 Score =  135 bits (339), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/114 (63%), Positives = 86/114 (75%), Gaps = 8/114 (7%)

Query: 1   MNKQVFQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADM----WRESAFFLR 56
           M KQVF+SF PD+KPI+ + +IEDI KCP+GY  ISKT DQD+DAD+    W+ES F  R
Sbjct: 1   MIKQVFKSF-PDNKPISGLCIIEDITKCPTGYNPISKTHDQDSDADLHMQSWKESVFIGR 59

Query: 57  K-TRYLCVSKTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICER 109
           K TRYLC+SKTE +   DYIV NI IINEKE PPDG+CLI RT+DSDQ    +R
Sbjct: 60  KITRYLCLSKTEGIS--DYIVVNINIINEKECPPDGYCLIPRTIDSDQKAWRKR 111

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211218|gb|EFN87418.1| Protein FAM125B [Harpegnathos saltator]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/134 (47%), Positives = 91/134 (67%), Gaps = 8/134 (5%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             + +PDD+PITAI+V+ED+ KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 14  LSAVLPDDRPITAISVVEDVDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 73

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ-----GQICERGGVVDYKPQQ 119
           KTE   Q D +VE+I +INE++TPP+G+C+I+ T+DS Q      Q+C +    D   + 
Sbjct: 74  KTEG--QPDCVVEDIVVINERDTPPEGYCMISYTVDSRQRAWRKKQVCYKLRNKDLCEKA 131

Query: 120 SNNTIFSQRNILKD 133
             + I   R I KD
Sbjct: 132 VTDIIICSRIIHKD 145

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|218749841|ref|NP_001106142.2| uncharacterized protein LOC551408 [Apis mellifera]

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 78/99 (78%), Gaps = 3/99 (3%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             S +PDD+PITAI+V+EDI KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 15  LSSVLPDDRPITAISVVEDIDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 74

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
           KTE L Q   +VE+I +INE++TPP+G+ +I+ T+DS Q
Sbjct: 75  KTEGLPQC--VVEDIAVINERDTPPEGYSIISYTVDSMQ 111

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013740|ref|XP_003690907.1| PREDICTED: LOW QUALITY PROTEIN: multivesicular body subunit 12B-like [Apis florea]

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 78/99 (78%), Gaps = 3/99 (3%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             S +PDD+PITAI+V+EDI KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 42  LSSVLPDDRPITAISVVEDIDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 101

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
           KTE L Q   +VE+I +INE++TPP+G+ +I+ T+DS Q
Sbjct: 102 KTEGLPQC--VVEDIAVINERDTPPEGYSIISYTVDSMQ 138

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194477810|tpg|DAA06289.1| TPA_exp: unknown [Apis mellifera] gi|218670125|gb|ABU68672.2| hypothetical protein [Apis mellifera]

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/99 (57%), Positives = 78/99 (78%), Gaps = 3/99 (3%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             S +PDD+PITAI+V+EDI KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 15  LSSVLPDDRPITAISVVEDIDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 74

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
           KTE L Q   +VE+I +INE++TPP+G+ +I+ T+DS Q
Sbjct: 75  KTEGLPQC--VVEDIAVINERDTPPEGYSIISYTVDSMQ 111

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729074|ref|XP_003402833.1| PREDICTED: multivesicular body subunit 12B [Bombus terrestris]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 3/99 (3%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             S +PDD+PITAI ++EDI KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 15  LSSVLPDDRPITAINIVEDIDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 74

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
           KTE L Q   +VE+I +INE++TPP+G+ +I+ T+DS Q
Sbjct: 75  KTEGLPQC--VVEDIVVINERDTPPEGYSIISYTVDSMQ 111

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801820|gb|EFZ22397.1| hypothetical protein SINV_01966 [Solenopsis invicta]

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/132 (46%), Positives = 90/132 (68%), Gaps = 8/132 (6%)

Query: 8   SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVSKT 66
           + +PDD+PITAI+V+ED+ KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C SKT
Sbjct: 16  AVLPDDRPITAISVVEDLDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFSKT 75

Query: 67  ESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ-----GQICERGGVVDYKPQQSN 121
           E   Q D +VE+I +INE++TPP+G+ +I+ T+D+ Q      Q+C +    D   +   
Sbjct: 76  EG--QPDCVVEDIVVINERDTPPEGYNMISYTVDTRQKAWRKKQVCYKIRNKDLCAKAVT 133

Query: 122 NTIFSQRNILKD 133
           + I   R I KD
Sbjct: 134 DIIICSRIIHKD 145

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401490|ref|XP_003486169.1| PREDICTED: multivesicular body subunit 12B-like [Bombus impatiens]

 Score =  120 bits (302), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/99 (56%), Positives = 77/99 (77%), Gaps = 3/99 (3%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             S +PDD+PITAI ++EDI KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 15  LSSVLPDDRPITAINIVEDIDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 74

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
           KTE L Q   +VE+I +INE++TPP+G+ +I+ T+DS Q
Sbjct: 75  KTEGLPQC--VVEDIVVINERDTPPEGYSIISCTVDSMQ 111

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021467|gb|EGI61835.1| Multivesicular body subunit 12B [Acromyrmex echinatior]

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 56/108 (51%), Positives = 82/108 (75%), Gaps = 8/108 (7%)

Query: 8   SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVSKT 66
           + +PDD+PITAI+V+ED+ KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C SKT
Sbjct: 48  AVLPDDRPITAISVVEDLDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFSKT 107

Query: 67  ESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ-----GQICER 109
           E   Q + +VE+I +INE++TPP+G+ +I+ T+DS Q      Q+C +
Sbjct: 108 EG--QPNCVVEDIMVINERDTPPEGYSMISYTVDSRQKAWRKKQVCYK 153

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857164|ref|XP_003704075.1| PREDICTED: multivesicular body subunit 12B-like [Megachile rotundata]

 Score =  120 bits (300), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 54/99 (54%), Positives = 77/99 (77%), Gaps = 3/99 (3%)

Query: 6   FQSFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKT-RYLCVS 64
             + +PDD+PIT+I V+EDI KCP  +TV+S+T DQDTDAD+WRES  F++K  RY+C S
Sbjct: 15  LSAVLPDDRPITSIRVVEDIDKCPPNFTVVSRTYDQDTDADLWRESGLFIKKKGRYICFS 74

Query: 65  KTESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
           KTE L Q   +VE+I +INE+++PP+G+ +I+ T+DS Q
Sbjct: 75  KTEGLPQC--VVEDIVVINERDSPPEGYSMISNTVDSMQ 111

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	229
FB|FBgn0030894	352	CG7192 [Drosophila melanogaste	0.410	0.267	0.484	2.3e-23
RGD|2322311	1361	Msh6 "mutS homolog 6 (E. coli)	0.358	0.060	0.454	1.3e-12
UNIPROTKB|F1PM27	1263	MSH6 "Uncharacterized protein"	0.454	0.082	0.404	8.3e-12
UNIPROTKB|J9P5H1	1279	MSH6 "Uncharacterized protein"	0.454	0.081	0.404	8.4e-12
UNIPROTKB|F5H2F9	1058	MSH6 "DNA mismatch repair prot	0.454	0.098	0.383	8.5e-12
UNIPROTKB|B4DF41	1230	MSH6 "DNA mismatch repair prot	0.454	0.084	0.383	1e-11
UNIPROTKB|P52701	1360	MSH6 "DNA mismatch repair prot	0.454	0.076	0.383	1.2e-11
MGI|MGI:1343961	1358	Msh6 "mutS homolog 6 (E. coli)	0.362	0.061	0.428	2.4e-11
UNIPROTKB|E1B9Q4	1360	MSH6 "Uncharacterized protein"	0.344	0.058	0.466	3.9e-11
ZFIN|ZDB-GENE-060929-372	296	mvb12ba "multivesicular body s	0.585	0.452	0.294	1.5e-10

FB|FBgn0030894 CG7192 [Drosophila melanogaster (taxid:7227)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 47/97 (48%), Positives = 74/97 (76%)

Query:     8 SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKT 66
             SF+PD++PIT++ ++ED ++CP  ++ IS+T DQD+DAD+WR+ + F R+ TRYLC+SK+
Sbjct:    50 SFLPDNRPITSLHIVEDFERCPKNFSAISRTYDQDSDADLWRDYSLFGRQNTRYLCLSKS 109

Query:    67 ESLFQIDYIVENICIINEKETPPDGFCLIARTLDSDQ 103
             E L   +Y+VE + +I++K  PP  F  ++RT DSDQ
Sbjct:   110 EGL--PEYVVETLQVISDKTPPPKEFSQVSRTADSDQ 144

GO:0000813 "ESCRT I complex" evidence=IDA

RGD|2322311 Msh6 "mutS homolog 6 (E. coli)" [Rattus norvegicus (taxid:10116)]

 Score = 182 (69.1 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 45/99 (45%), Positives = 61/99 (61%)

Query:   135 YQQG----VCVPTFL--GLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDV 184
             Y QG    +C P  L  G E+ HP++    S +PC T    GD  +IPN  +IG C+ED 
Sbjct:  1066 YSQGGDGPMCRPVLLLPG-EDTHPFLELKGSRHPCITKTFFGDD-FIPNDILIG-CEEDA 1122

Query:   185 ESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
             E+ G    K   +L+TGPNMGGKST++RQ GL+ ++AQM
Sbjct:  1123 EADG----KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQM 1157

GO:0000790 "nuclear chromatin" evidence=ISO

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0003684 "damaged DNA binding" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006298 "mismatch repair" evidence=IEA;ISO

GO:0008340 "determination of adult lifespan" evidence=ISO

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=ISO

GO:0009411 "response to UV" evidence=ISO

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=ISO

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=ISO

GO:0030983 "mismatched DNA binding" evidence=IEA;ISO

GO:0032137 "guanine/thymine mispair binding" evidence=ISO

GO:0032301 "MutSalpha complex" evidence=ISO

GO:0045190 "isotype switching" evidence=ISO

GO:0045910 "negative regulation of DNA recombination" evidence=ISO

GO:0051096 "positive regulation of helicase activity" evidence=ISO

GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043570 "maintenance of DNA repeat elements" evidence=ISO

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0000400 "four-way junction DNA binding" evidence=ISO

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0016887 "ATPase activity" evidence=ISO

GO:0032142 "single guanine insertion binding" evidence=ISO

GO:0032143 "single thymine insertion binding" evidence=ISO

GO:0032357 "oxidized purine DNA binding" evidence=ISO

GO:0032405 "MutLalpha complex binding" evidence=ISO

GO:0043531 "ADP binding" evidence=ISO

UNIPROTKB|F1PM27 MSH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 49/121 (40%), Positives = 68/121 (56%)

Query:   114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEE-PHPYISALESLYPCAT- 165
             +YK  QS     +  ++L  +  Y QG    +C P  L  EE   P++    S +PC T 
Sbjct:   971 NYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITK 1030

Query:   166 ---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
                GD  +IPN  +IG C+E+ E  G    K   +L+TGPNMGGKST+MRQ GL+ ++AQ
Sbjct:  1031 TFFGDD-FIPNDILIG-CEEEEEENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQ 1084

Query:   223 M 223
             M
Sbjct:  1085 M 1085

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9P5H1 MSH6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 8.4e-12, P = 8.4e-12
 Identities = 49/121 (40%), Positives = 68/121 (56%)

Query:   114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEE-PHPYISALESLYPCAT- 165
             +YK  QS     +  ++L  +  Y QG    +C P  L  EE   P++    S +PC T 
Sbjct:   961 NYKDWQSAVECIAVLDVLLCLANYSQGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITK 1020

Query:   166 ---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
                GD  +IPN  +IG C+E+ E  G    K   +L+TGPNMGGKST+MRQ GL+ ++AQ
Sbjct:  1021 TFFGDD-FIPNDILIG-CEEEEEENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQ 1074

Query:   223 M 223
             M
Sbjct:  1075 M 1075

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F5H2F9 MSH6 "DNA mismatch repair protein Msh6" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 8.5e-12, P = 8.5e-12
 Identities = 46/120 (38%), Positives = 68/120 (56%)

Query:   114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEEPHPYISALESLYPCAT-- 165
             +YK  QS     +  ++L  +  Y +G    +C P  L  E+  P++    S +PC T  
Sbjct:   741 NYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT 800

Query:   166 --GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
               GD  +IPN  +IG C+E+ +  G    K   +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct:   801 FFGDD-FIPNDILIG-CEEEEQENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 854

GO:0005524 "ATP binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0045910 "negative regulation of DNA recombination" evidence=IEA

UNIPROTKB|B4DF41 MSH6 "DNA mismatch repair protein Msh6" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 46/120 (38%), Positives = 68/120 (56%)

Query:   114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEEPHPYISALESLYPCAT-- 165
             +YK  QS     +  ++L  +  Y +G    +C P  L  E+  P++    S +PC T  
Sbjct:   913 NYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT 972

Query:   166 --GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
               GD  +IPN  +IG C+E+ +  G    K   +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct:   973 FFGDD-FIPNDILIG-CEEEEQENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1026

GO:0005524 "ATP binding" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0030983 "mismatched DNA binding" evidence=IEA

UNIPROTKB|P52701 MSH6 "DNA mismatch repair protein Msh6" [Homo sapiens (taxid:9606)]

 Score = 173 (66.0 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 46/120 (38%), Positives = 68/120 (56%)

Query:   114 DYKPQQSNNTIFSQRNILKDM--YQQG----VCVPTFLGLEEPHPYISALESLYPCAT-- 165
             +YK  QS     +  ++L  +  Y +G    +C P  L  E+  P++    S +PC T  
Sbjct:  1043 NYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKT 1102

Query:   166 --GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
               GD  +IPN  +IG C+E+ +  G    K   +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct:  1103 FFGDD-FIPNDILIG-CEEEEQENG----KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 1156

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000228 "nuclear chromosome" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=ISS;IBA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=ISS;IBA

GO:0009411 "response to UV" evidence=ISS;IBA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=ISS;IBA

GO:0045190 "isotype switching" evidence=ISS;IBA

GO:0005515 "protein binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0032405 "MutLalpha complex binding" evidence=IDA

GO:0000400 "four-way junction DNA binding" evidence=IDA

GO:0006298 "mismatch repair" evidence=IDA;IMP

GO:0032301 "MutSalpha complex" evidence=IDA

GO:0030983 "mismatched DNA binding" evidence=IDA

GO:0032137 "guanine/thymine mispair binding" evidence=IDA

GO:0032142 "single guanine insertion binding" evidence=IDA

GO:0032143 "single thymine insertion binding" evidence=IDA

GO:0032357 "oxidized purine DNA binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0043531 "ADP binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0097193 "intrinsic apoptotic signaling pathway" evidence=ISS

GO:0008340 "determination of adult lifespan" evidence=ISS

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=ISS

GO:0006281 "DNA repair" evidence=IDA

GO:0043570 "maintenance of DNA repeat elements" evidence=IMP

GO:0045910 "negative regulation of DNA recombination" evidence=IDA

GO:0051096 "positive regulation of helicase activity" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=IDA

MGI|MGI:1343961 Msh6 "mutS homolog 6 (E. coli)" [Mus musculus (taxid:10090)]

 Score = 170 (64.9 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 42/98 (42%), Positives = 59/98 (60%)

Query:   135 YQQG----VCVPTF-LGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVE 185
             Y QG    +C P   L  E+ HP++    S +PC T    GD  +IPN  +IG C+E+ E
Sbjct:  1063 YSQGGDGPMCRPEIVLPGEDTHPFLEFKGSRHPCITKTFFGDD-FIPNDILIG-CEEEAE 1120

Query:   186 SGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
               G    K   +L+TGPNMGGKST++RQ GL+ ++AQ+
Sbjct:  1121 EHG----KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQL 1154

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000400 "four-way junction DNA binding" evidence=IBA

GO:0000710 "meiotic mismatch repair" evidence=IBA

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0003677 "DNA binding" evidence=IGI;IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0003684 "damaged DNA binding" evidence=IGI;IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006298 "mismatch repair" evidence=ISO;IGI;IMP

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=IBA

GO:0008094 "DNA-dependent ATPase activity" evidence=IBA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IMP

GO:0009411 "response to UV" evidence=IMP

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IMP

GO:0016447 "somatic recombination of immunoglobulin gene segments" evidence=IMP

GO:0030983 "mismatched DNA binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IDA

GO:0032138 "single base insertion or deletion binding" evidence=IBA

GO:0032301 "MutSalpha complex" evidence=ISO;IDA

GO:0043570 "maintenance of DNA repeat elements" evidence=IBA

GO:0045190 "isotype switching" evidence=IMP

GO:0045910 "negative regulation of DNA recombination" evidence=ISO;IMP

GO:0051096 "positive regulation of helicase activity" evidence=ISO

GO:0097193 "intrinsic apoptotic signaling pathway" evidence=IMP

UNIPROTKB|E1B9Q4 MSH6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 42/90 (46%), Positives = 55/90 (61%)

Query:   139 VCVPTFLGLEEPHP-YISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRK 193
             +C P  L  EE  P ++    S +PC T    GD  +IPN  +IG C+E+ E  G    K
Sbjct:  1073 MCRPIILLPEEDTPPFLDLKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEEENG----K 1126

Query:   194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
                +L+TGPNMGGKST+MRQ GL+ I+AQM
Sbjct:  1127 AYCVLVTGPNMGGKSTLMRQAGLLAIMAQM 1156

GO:0051096 "positive regulation of helicase activity" evidence=IEA

GO:0045910 "negative regulation of DNA recombination" evidence=IEA

GO:0045190 "isotype switching" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0032405 "MutLalpha complex binding" evidence=IEA

GO:0032357 "oxidized purine DNA binding" evidence=IEA

GO:0032301 "MutSalpha complex" evidence=IEA

GO:0032143 "single thymine insertion binding" evidence=IEA

GO:0032142 "single guanine insertion binding" evidence=IEA

GO:0032137 "guanine/thymine mispair binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016446 "somatic hypermutation of immunoglobulin genes" evidence=IEA

GO:0009411 "response to UV" evidence=IEA

GO:0008630 "intrinsic apoptotic signaling pathway in response to DNA damage" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IEA

GO:0006298 "mismatch repair" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

GO:0000400 "four-way junction DNA binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-060929-372 mvb12ba "multivesicular body subunit 12Ba" [Danio rerio (taxid:7955)]

 Score = 161 (61.7 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 41/139 (29%), Positives = 72/139 (51%)

Query:    10 IPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL 69
             +P D PIT + V+    + P+GY V+++T D   DAD+W++  F  + TRYLC ++  S 
Sbjct:    14 MPMD-PITGVGVVASRNRAPTGYDVVAQTTD-GIDADLWKDGLFKSKVTRYLCFTRAFSK 71

Query:    70 --FQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQ 127
                 +  ++ ++ +I+ K+T P GF  I  T+D+ +    +R   + + P+ S       
Sbjct:    72 ENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEPAFRKRRLCIKFIPRDSTEAAICD 131

Query:   128 RNILKDMYQQGVCVPTFLG 146
               IL    +Q     TF+G
Sbjct:   132 IRIL-GRSKQAPPQYTFIG 149

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	229
pfam10240	251	pfam10240, DUF2464, Protein of unknown function (D	3e-26
PRK05399	854	PRK05399, PRK05399, DNA mismatch repair protein Mu	3e-16
pfam00488	235	pfam00488, MutS_V, MutS domain V	8e-15
cd03286	218	cd03286, ABC_MSH6_euk, ATP-binding cassette domain	2e-13
COG0249	843	COG0249, MutS, Mismatch repair ATPase (MutS family	3e-13
cd03243	202	cd03243, ABC_MutS_homologs, ATP-binding cassette d	1e-12
smart00534	185	smart00534, MUTSac, ATPase domain of DNA mismatch	2e-12
cd03284	216	cd03284, ABC_MutS1, ATP-binding cassette domain of	3e-12
TIGR01070	840	TIGR01070, mutS1, DNA mismatch repair protein MutS	2e-09
cd03285	222	cd03285, ABC_MSH2_euk, ATP-binding cassette domain	3e-09
cd03287	222	cd03287, ABC_MSH3_euk, ATP-binding cassette domain	1e-07
cd03281	213	cd03281, ABC_MSH5_euk, ATP-binding cassette domain	1e-07
cd03282	204	cd03282, ABC_MSH4_euk, ATP-binding cassette domain	2e-06
cd03283	199	cd03283, ABC_MutS-like, ATP-binding cassette domai	3e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	3e-06
cd03280	200	cd03280, ABC_MutS2, ATP-binding cassette domain of	1e-05
COG1193	753	COG1193, COG1193, Mismatch repair ATPase (MutS fam	3e-05
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	0.002
TIGR01069	771	TIGR01069, mutS2, MutS2 family protein	0.003

>gnl|CDD|220646 pfam10240, DUF2464, Protein of unknown function (DUF2464)

 Score =  101 bits (254), Expect = 3e-26
 Identities = 40/101 (39%), Positives = 62/101 (61%), Gaps = 8/101 (7%)

Query: 15  PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQI-D 73
           PITA+  + D +KCP G++ ISKTVD   DAD+WR+  F  R TRYLC S +ES   +  
Sbjct: 2   PITALGWVADFEKCPKGFSPISKTVD-GADADLWRDG-FGSRSTRYLCYSTSESKNGLPG 59

Query: 74  YIVENICIINEKETPPDGFCLIARTLDSDQG-----QICER 109
            +V ++ +I++K+T P G+  I  T D+ +      ++C +
Sbjct: 60  NVVVDLQVIDDKDTLPVGYSAIPETADTREKVWRKKRLCVK 100

This is a family of proteins conserved from worms to humans. Members have been annotated as FAM125A proteins, but their function is unknown. Length = 251

>gnl|CDD|235444 PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional

 Score = 77.1 bits (191), Expect = 3e-16
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 13/60 (21%)

Query: 164 ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
             G + ++PN   +           E  R   +LL+TGPNM GKST MRQ+ LI +LAQ+
Sbjct: 590 VLGGEPFVPNDCDLD----------EERR---LLLITGPNMAGKSTYMRQVALIVLLAQI 636

Length = 854

>gnl|CDD|215944 pfam00488, MutS_V, MutS domain V

 Score = 70.7 bits (174), Expect = 8e-15
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 19/87 (21%)

Query: 140 CVPTFLGLEEPHPYISALESLYPC---ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTV 196
             P F         +      +P          ++PN   +G+             +  +
Sbjct: 2   VRPEFT----ESAALHIEGGRHPVVEAVLDAGNFVPNDVSLGK------------ERSRI 45

Query: 197 LLLTGPNMGGKSTVMRQLGLITILAQM 223
           LL+TGPNMGGKST +RQ+ LI I+AQ+
Sbjct: 46  LLITGPNMGGKSTYLRQVALIVIMAQI 72

This domain is found in proteins of the MutS family (DNA mismatch repair proteins) and is found associated with pfam01624, pfam05188, pfam05192 and pfam05190. The mutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair; other members of the family included the eukaryotic MSH 1,2,3, 4,5 and 6 proteins. These have various roles in DNA repair and recombination. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. The aligned region corresponds with domain V of Thermus aquaticus MutS as characterized in, which contains a Walker A motif, and is structurally similar to the ATPase domain of ABC transporters. Length = 235

>gnl|CDD|213253 cd03286, ABC_MSH6_euk, ATP-binding cassette domain of eukaryotic MutS6 homolog

 Score = 66.7 bits (163), Expect = 2e-13
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 14/65 (21%)

Query: 161 YPCATGDQ--TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT 218
           +PC       +++PN   +G               P +L+LTGPNMGGKST++R + L  
Sbjct: 7   HPCLNASTASSFVPNDVDLGA------------TSPRILVLTGPNMGGKSTLLRTVCLAV 54

Query: 219 ILAQM 223
           I+AQM
Sbjct: 55  IMAQM 59

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 218

>gnl|CDD|223327 COG0249, MutS, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score = 68.1 bits (167), Expect = 3e-13
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 13/57 (22%)

Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
           D  ++PN   +             +    ++L+TGPNMGGKST +RQ+ LI ILAQ+
Sbjct: 593 DNGFVPNDIDL-------------SGNRRIILITGPNMGGKSTYLRQVALIVILAQI 636

Length = 843

>gnl|CDD|213210 cd03243, ABC_MutS_homologs, ATP-binding cassette domain of MutS homologs

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 23/78 (29%)

Query: 146 GLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMG 205
           G   P      L +L    T  +T++PN   +G                 +LL+TGPNMG
Sbjct: 4   GGRHPV-----LLAL----TKGETFVPNDINLGS--------------GRLLLITGPNMG 40

Query: 206 GKSTVMRQLGLITILAQM 223
           GKST +R +GL  +LAQ+
Sbjct: 41  GKSTYLRSIGLAVLLAQI 58

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 202

>gnl|CDD|197777 smart00534, MUTSac, ATPase domain of DNA mismatch repair MUTS family

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 18/28 (64%), Positives = 25/28 (89%)

Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQM 223
           V+++TGPNMGGKST +RQ+ LI I+AQ+
Sbjct: 1   VVIITGPNMGGKSTYLRQVALIVIMAQI 28

Length = 185

>gnl|CDD|213251 cd03284, ABC_MutS1, ATP-binding cassette domain of MutS1 homolog

 Score = 63.1 bits (154), Expect = 3e-12
 Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 13/60 (21%)

Query: 164 ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
              ++ ++PN T +             + +  +LL+TGPNM GKST +RQ+ LI +LAQ+
Sbjct: 13  VLDNEPFVPNDTEL-------------DPERQILLITGPNMAGKSTYLRQVALIALLAQI 59

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 216

>gnl|CDD|233259 TIGR01070, mutS1, DNA mismatch repair protein MutS

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 13/57 (22%)

Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
              ++PN         D+E     NR+  +LL+TGPNMGGKST MRQ  LI +LAQ+
Sbjct: 578 RTPFVPN---------DLEMAH--NRR--MLLITGPNMGGKSTYMRQTALIALLAQI 621

[DNA metabolism, DNA replication, recombination, and repair]. Length = 840

>gnl|CDD|213252 cd03285, ABC_MSH2_euk, ATP-binding cassette domain of eukaryotic MutS2 homolog

 Score = 55.1 bits (133), Expect = 3e-09
 Identities = 28/67 (41%), Positives = 39/67 (58%), Gaps = 14/67 (20%)

Query: 158 ESLYPC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG 215
           E+ +PC  A  D  +IPN         DV      +R    L++TGPNMGGKST +RQ+G
Sbjct: 4   EARHPCVEAQDDVAFIPN---------DVTLTRGKSR---FLIITGPNMGGKSTYIRQIG 51

Query: 216 LITILAQ 222
           +I ++AQ
Sbjct: 52  VIVLMAQ 58

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222

>gnl|CDD|213254 cd03287, ABC_MSH3_euk, ATP-binding cassette domain of eukaryotic MutS3 homolog

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 20/72 (27%)

Query: 151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTV 210
           HP I +L         D++++PN         D+    EG       ++TGPNMGGKS+ 
Sbjct: 8   HPMIESLL--------DKSFVPN---------DIHLSAEGGY---CQIITGPNMGGKSSY 47

Query: 211 MRQLGLITILAQ 222
           +RQ+ LITI+AQ
Sbjct: 48  IRQVALITIMAQ 59

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 222

>gnl|CDD|213248 cd03281, ABC_MSH5_euk, ATP-binding cassette domain of eukaryotic MutS5 homolog

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 12/55 (21%)

Query: 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
            +++PN T IG               P+++++TGPN  GKS  ++Q+ LI  LA 
Sbjct: 15  DSFVPNDTEIGG------------GGPSIMVITGPNSSGKSVYLKQVALIVFLAH 57

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 213

>gnl|CDD|213249 cd03282, ABC_MSH4_euk, ATP-binding cassette domain of eukaryotic MutS4 homolog

 Score = 46.6 bits (111), Expect = 2e-06
 Identities = 14/26 (53%), Positives = 22/26 (84%)

Query: 198 LLTGPNMGGKSTVMRQLGLITILAQM 223
           ++TGPNM GKST ++Q+ L+ I+AQ+
Sbjct: 33  IITGPNMSGKSTYLKQIALLAIMAQI 58

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 204

>gnl|CDD|213250 cd03283, ABC_MutS-like, ATP-binding cassette domain of MutS-like homolog

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQMENP 226
           K   +L+TG NM GKST +R +G+  ILAQ   P
Sbjct: 24  KKNGILITGSNMSGKSTFLRTIGVNVILAQAGAP 57

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 199

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 45.4 bits (108), Expect = 3e-06
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
           + ++ ++TGPN  GKST++  +GL    AQ
Sbjct: 20  EGSLTIITGPNGSGKSTILDAIGLALGGAQ 49

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|213247 cd03280, ABC_MutS2, ATP-binding cassette domain of MutS2

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 18/35 (51%), Positives = 26/35 (74%), Gaps = 3/35 (8%)

Query: 188 GEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
           GE  R   VL++TGPN GGK+  ++ LGL+T++AQ
Sbjct: 25  GENKR---VLVITGPNAGGKTVTLKTLGLLTLMAQ 56

MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA structures or lesions results in ADP/ATP exchange. Length = 200

>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 181 KEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI 229
           KEDV +  E   +   L++TGPN GGK+  ++ LGL+ ++AQ   P   
Sbjct: 304 KEDVPNDLELGEELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPA 352

Length = 753

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 39.4 bits (93), Expect = 0.001
 Identities = 14/28 (50%), Positives = 22/28 (78%)

Query: 195 TVLLLTGPNMGGKSTVMRQLGLITILAQ 222
           TVL++TGPN GGK+  ++ LGL  ++A+
Sbjct: 328 TVLVITGPNTGGKTVTLKTLGLAALMAK 355

Length = 782

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
           +   ++ L GPN  GKST++R +  +     
Sbjct: 23  KAGEIVALVGPNGSGKSTLLRAIAGLLKPTS 53

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 13/32 (40%), Positives = 21/32 (65%)

Query: 191 NRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ 222
             +  VL +TGPN GGK+  ++ LGL+ ++ Q
Sbjct: 319 KFEKRVLAITGPNTGGKTVTLKTLGLLALMFQ 350

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function [DNA metabolism, Other]. Length = 771

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	229
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.95
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.92
TIGR01070	840	mutS1 DNA mismatch repair protein MutS.	99.89
KOG4000|consensus	291		99.86
PF10240	251	DUF2464: Protein of unknown function (DUF2464); In	99.86
PRK05399	854	DNA mismatch repair protein MutS; Provisional	99.85
COG0249	843	MutS Mismatch repair ATPase (MutS family) [DNA rep	99.85
COG1193	753	Mismatch repair ATPase (MutS family) [DNA replicat	99.83
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	99.8
KOG0218|consensus	1070		99.77
KOG0219|consensus	902		99.76
KOG0220|consensus	867		99.67
KOG0217|consensus	1125		99.61
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.58
KOG0221|consensus	849		99.56
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.55
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.54
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.52
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.52
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.51
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.48
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.47
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.44
COG0488	530	Uup ATPase components of ABC transporters with dup	99.38
KOG0927|consensus	614		99.1
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.07
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.99
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.93
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.91
PRK11147	635	ABC transporter ATPase component; Reviewed	98.89
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.88
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.78
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.76
KOG0066|consensus	807		98.75
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.72
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.71
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.7
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.7
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.7
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.69
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.69
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.69
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.68
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.68
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.68
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.67
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.67
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.67
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.67
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.67
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.67
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.67
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.67
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.67
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.67
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.67
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.67
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.67
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.66
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.66
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.66
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.66
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.66
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.66
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.66
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.66
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.66
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.66
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.66
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.66
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.66
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.66
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.66
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.65
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.65
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.65
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.65
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.65
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.65
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.65
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.65
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.65
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.65
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.65
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.65
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.65
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.65
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.65
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.64
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.64
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.64
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.64
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.64
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.64
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.64
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.64
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.63
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.63
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.63
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.63
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.63
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.63
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.63
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.63
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.63
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.63
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.63
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.62
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.62
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.62
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.62
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.61
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.61
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.61
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.61
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.61
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.6
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.6
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.6
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.6
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.6
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.6
PRK10908	222	cell division protein FtsE; Provisional	98.6
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.6
COG4559	259	ABC-type hemin transport system, ATPase component	98.6
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.59
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.59
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.59
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.59
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.59
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.59
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.58
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.58
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.58
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.58
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.57
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.57
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.57
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.57
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.57
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.57
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.57
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.57
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.57
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.56
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.56
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.56
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.56
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.56
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.56
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.55
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.55
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.55
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.55
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.55
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.55
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.55
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.54
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.54
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.54
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.54
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.54
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.54
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.53
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.53
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.53
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.53
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.53
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.52
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.52
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.51
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.51
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.51
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.51
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.51
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.51
PRK10938	490	putative molybdenum transport ATP-binding protein	98.51
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.51
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.5
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.5
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.5
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.5
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.5
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.49
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.49
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.49
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.49
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.49
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.49
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.49
cd03246	173	ABCC_Protease_Secretion This family represents the	98.49
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.49
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.48
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.48
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.47
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.47
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.47
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.46
PRK11147	635	ABC transporter ATPase component; Reviewed	98.46
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.46
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.46
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.46
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.46
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.46
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.45
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.45
PRK10938	490	putative molybdenum transport ATP-binding protein	98.45
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.45
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.45
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.44
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.44
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.44
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.44
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.44
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.43
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.43
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.43
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.43
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.43
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.43
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.42
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.42
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.41
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.41
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.4
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.4
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.39
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.39
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.39
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.39
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.39
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.39
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.38
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.37
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.37
smart00533	308	MUTSd DNA-binding domain of DNA mismatch repair MU	98.36
PLN03073	718	ABC transporter F family; Provisional	98.35
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.35
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.35
COG0488	530	Uup ATPase components of ABC transporters with dup	98.34
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.34
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.33
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.32
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.32
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.32
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.32
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.32
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.31
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.31
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.3
KOG0064|consensus	728		98.3
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.3
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.29
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.29
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.29
PLN03073	718	ABC transporter F family; Provisional	98.29
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.28
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.28
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.27
KOG0062|consensus	582		98.26
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.25
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.23
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.23
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.22
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.21
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.2
KOG0057|consensus	591		98.19
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.19
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.19
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.19
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.19
PRK13409	590	putative ATPase RIL; Provisional	98.16
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.16
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.15
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.14
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.13
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.12
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.11
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.09
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.08
PRK13409	590	putative ATPase RIL; Provisional	98.07
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.06
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.05
PLN03211	659	ABC transporter G-25; Provisional	98.05
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.03
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.01
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	97.99
KOG0060|consensus	659		97.99
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	97.99
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.98
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	97.98
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	97.98
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	97.98
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	97.97
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	97.97
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	97.96
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	97.96
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	97.96
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	97.96
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	97.96
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	97.95
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	97.95
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.93
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.93
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	97.92
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	97.89
KOG2355|consensus	291		97.88
KOG0062|consensus	582		97.86
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	97.86
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.86
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.84
KOG0058|consensus	716		97.84
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.82
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.82
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.81
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	97.8
COG4988	559	CydD ABC-type transport system involved in cytochr	97.8
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.79
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	97.79
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	97.78
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	97.77
COG4178	604	ABC-type uncharacterized transport system, permeas	97.76
KOG0056|consensus	790		97.76
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.75
COG4987	573	CydC ABC-type transport system involved in cytochr	97.74
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.73
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.72
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.71
PLN03140	1470	ABC transporter G family member; Provisional	97.7
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	97.7
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.65
COG4181	228	Predicted ABC-type transport system involved in ly	97.6
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.6
PLN03140	1470	ABC transporter G family member; Provisional	97.59
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.59
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.56
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.56
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.55
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.53
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.53
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.52
PTZ00243	1560	ABC transporter; Provisional	97.52
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.52
PLN03232	1495	ABC transporter C family member; Provisional	97.51
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	97.49
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.48
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.47
PLN03130	1622	ABC transporter C family member; Provisional	97.44
PTZ00243	1560	ABC transporter; Provisional	97.43
KOG0927|consensus	614		97.43
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	97.41
COG1123	539	ATPase components of various ABC-type transport sy	97.4
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.38
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.38
PLN03232	1495	ABC transporter C family member; Provisional	97.35
COG4136	213	ABC-type uncharacterized transport system, ATPase	97.31
PLN03130	1622	ABC transporter C family member; Provisional	97.29
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.24
KOG0055|consensus	1228		97.11
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.07
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.07
COG1123	539	ATPase components of various ABC-type transport sy	97.07
KOG0061|consensus	613		97.06
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.06
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.01
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	96.91
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.83
KOG0059|consensus	885		96.81
KOG0219|consensus	902		96.81
PRK10416	318	signal recognition particle-docking protein FtsY;	96.73
PRK09183	259	transposase/IS protein; Provisional	96.73
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	96.73
COG3910	233	Predicted ATPase [General function prediction only	96.69
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	96.68
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	96.67
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	96.66
PRK10246	1047	exonuclease subunit SbcC; Provisional	96.66
PHA02562	562	46 endonuclease subunit; Provisional	96.65
KOG0055|consensus	1228		96.65
PRK00635	1809	excinuclease ABC subunit A; Provisional	96.63
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	96.59
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.58
KOG0054|consensus	1381		96.56
PF10240	251	DUF2464: Protein of unknown function (DUF2464); In	96.56
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	96.49
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	96.47
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	96.46
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.46
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.46
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	96.44
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	96.43
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	96.4
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	96.39
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	96.35
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	96.34
PRK05922	434	type III secretion system ATPase; Validated	96.34
PRK08149	428	ATP synthase SpaL; Validated	96.31
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.3
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.3
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.29
PLN02796	347	D-glycerate 3-kinase	96.27
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	96.27
KOG0066|consensus	807		96.25
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	96.23
PRK14974	336	cell division protein FtsY; Provisional	96.23
PRK00635	1809	excinuclease ABC subunit A; Provisional	96.22
PRK04863	1486	mukB cell division protein MukB; Provisional	96.22
PLN02165	334	adenylate isopentenyltransferase	96.2
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.2
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.2
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	96.13
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	96.13
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	96.1
PRK07594	433	type III secretion system ATPase SsaN; Validated	96.09
PRK06936	439	type III secretion system ATPase; Provisional	96.07
PRK09099	441	type III secretion system ATPase; Provisional	96.04
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	96.01
PRK13851	344	type IV secretion system protein VirB11; Provision	96.01
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.99
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	95.95
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	95.93
TIGR00767	415	rho transcription termination factor Rho. Members	95.93
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	95.87
KOG4000|consensus	291		95.87
COG4172	534	ABC-type uncharacterized transport system, duplica	95.86
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	95.86
KOG0018|consensus	1141		95.83
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.82
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	95.82
PLN02318	656	phosphoribulokinase/uridine kinase	95.79
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	95.78
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	95.77
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	95.75
PRK09862	506	putative ATP-dependent protease; Provisional	95.69
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	95.66
PLN03046	460	D-glycerate 3-kinase; Provisional	95.64
PRK06820	440	type III secretion system ATPase; Validated	95.64
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.63
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	95.62
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	95.6
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	95.53
PRK09435	332	membrane ATPase/protein kinase; Provisional	95.49
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	95.49
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	95.47
PTZ00202	550	tuzin; Provisional	95.46
KOG1970|consensus	634		95.43
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	95.41
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	95.38
TIGR02533	486	type_II_gspE general secretory pathway protein E.	95.38
PRK06315	442	type III secretion system ATPase; Provisional	95.37
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	95.33
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	95.32
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	95.28
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.23
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	95.23
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	95.21
PF13245	76	AAA_19: Part of AAA domain	95.2
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	95.07
PRK13833	323	conjugal transfer protein TrbB; Provisional	95.07
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	95.05
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	95.03
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	94.99
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	94.96
PRK00098	298	GTPase RsgA; Reviewed	94.94
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	94.93
PTZ00035	337	Rad51 protein; Provisional	94.85
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	94.83
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	94.82
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	94.78
KOG0065|consensus	1391		94.69
PRK08099	399	bifunctional DNA-binding transcriptional repressor	94.67
PRK06526	254	transposase; Provisional	94.66
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	94.65
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	94.59
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	94.58
PRK06851	367	hypothetical protein; Provisional	94.57
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	94.55

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.95  E-value=7e-28  Score=235.36  Aligned_cols=167  Identities=21%  Similarity=0.299  Sum_probs=137.3

Q ss_pred             cccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhcc-ee-------e--
Q psy13262         45 ADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICERG-GV-------V--  113 (229)
Q Consensus        45 a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~~-~~-------v--  113 (229)
                      ..+++|..++.+++||++|+|.++++.++|+|||.+..+.+ +..|.....+++..........++. .+       +  
T Consensus       181 ~~~L~d~~it~r~~r~~i~vk~~~~~~~~g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~  260 (782)
T PRK00409        181 QKYLQDTIITIRNDRYVLPVKAEYKHAIKGIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAK  260 (782)
T ss_pred             ccccccceEEEECCEEEEEechhhhccCCCceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47789877777889999999999999999999999999988 8889988888886665443333321 00       0  


Q ss_pred             eecccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCC
Q psy13262        114 DYKPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE  189 (229)
Q Consensus       114 ~l~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~  189 (229)
                      ....+....+.++++|++.+++    .+++|+|.+.+.    ..+.+.++|||++.. ..+||||+.+++          
T Consensus       261 ~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~----~~i~l~~~rHPll~~-~~~Vpndi~l~~----------  325 (782)
T PRK00409        261 NLDFLKFLNKIFDELDFIFARARYAKALKATFPLFNDE----GKIDLRQARHPLLDG-EKVVPKDISLGF----------  325 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccceEcCC----CcEEEcCcCCceecc-CceECceeEECC----------
Confidence            0134456788899999999865    688999999864    468899999999964 579999999986          


Q ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                         +.++++|||||||||||+||++|++++|||+|+|||.
T Consensus       326 ---~~~~~iITGpN~gGKTt~lktigl~~~maq~G~~vpa  362 (782)
T PRK00409        326 ---DKTVLVITGPNTGGKTVTLKTLGLAALMAKSGLPIPA  362 (782)
T ss_pred             ---CceEEEEECCCCCCcHHHHHHHHHHHHHHHhCCCccc
Confidence               4589999999999999999999999999999999983

>TIGR01069 mutS2 MutS2 family protein

Probab=99.92  E-value=1.9e-25  Score=217.96  Aligned_cols=167  Identities=19%  Similarity=0.148  Sum_probs=137.3

Q ss_pred             cccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhcce-ee---------
Q psy13262         45 ADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICERGG-VV---------  113 (229)
Q Consensus        45 a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~~~-~v---------  113 (229)
                      +.++||..++.+++|||+|+|.++++.++|+|||.+..+.+ +..|.....+++..........++.. ++         
T Consensus       176 ~~~l~~~~it~r~~r~vipvk~~~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~  255 (771)
T TIGR01069       176 AKYLSDTIVTIRNGRYVLPLKSGFKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQE  255 (771)
T ss_pred             hhhhcCceEEEECCEEEEEeeHHHhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47888877788889999999999999999999999998888 88899899888877665544433311 11         


Q ss_pred             eecccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCC
Q psy13262        114 DYKPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE  189 (229)
Q Consensus       114 ~l~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~  189 (229)
                      ....+..+.+.++++|++.+.+    .+++++|.+.+.    ..+.+.++|||++.. ..+||||+.++.          
T Consensus       256 ~~~~l~~~~~~l~~lD~l~a~a~~a~~~~~~~P~~~~~----~~i~l~~~rhPll~~-~~~vp~di~l~~----------  320 (771)
T TIGR01069       256 YLLELKFLFKEFDFLDSLQARARYAKAVKGEFPMPSFT----GKIILENARHPLLKE-PKVVPFTLNLKF----------  320 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeeceecCC----CCEEEccccCceecC-CceEeceeEeCC----------
Confidence            0134556788899999999865    578999998764    378999999999853 459999999986          


Q ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                         +.+.++||||||||||||||+++++++|+|+|++||.
T Consensus       321 ---~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa  357 (771)
T TIGR01069       321 ---EKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPA  357 (771)
T ss_pred             ---CceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccC
Confidence               4489999999999999999999999999999999874

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR01070 mutS1 DNA mismatch repair protein MutS

Probab=99.89  E-value=1.9e-23  Score=205.44  Aligned_cols=153  Identities=23%  Similarity=0.307  Sum_probs=115.2

Q ss_pred             cEEEEEeecccccCCCc-EEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc-ceee---------eecccccccchh
Q psy13262         58 TRYLCVSKTESLFQIDY-IVENICIINEK-ETPPDGFCLIARTLDSDQGQICER-GGVV---------DYKPQQSNNTIF  125 (229)
Q Consensus        58 gRyv~~vk~~~~~~~~g-iV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~-~~~v---------~l~~l~~~~~~~  125 (229)
                      .+|++.++.....++++ .+++-+..+.. +..|+ +..+++.....+..+.+. ..+.         ....+....+.+
T Consensus       456 ~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpe-l~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l  534 (840)
T TIGR01070       456 FGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPE-LKEKEDKVLEAEGKILALEKELFEELRELLKKYLEALQEAARAL  534 (840)
T ss_pred             ceEEEEEehhhhhcCCcceEEEEeccCceEEcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78899988887777887 67775554554 55565 566665554433322221 1100         113455678889


Q ss_pred             hhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcEEEE
Q psy13262        126 SQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLL  199 (229)
Q Consensus       126 ~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~l  199 (229)
                      +++|++.+++    ++++|+|++.+.    +.+.+.++|||++..  ...|||||+.+++             +.+.++|
T Consensus       535 a~lD~l~s~A~~a~~~~~~~P~~~~~----~~i~i~~~RHP~le~~~~~~~VpNdi~l~~-------------~~~~~iI  597 (840)
T TIGR01070       535 AELDVLANLAEVAETLHYTRPRFGDD----PQLRIREGRHPVVEQVLRTPFVPNDLEMAH-------------NRRMLLI  597 (840)
T ss_pred             HHHHHHHHHHHHHHHCCCcCceecCC----CcEEEEeeECHHHHhccCCCeEeeeeecCC-------------CccEEEE
Confidence            9999999875    688999999875    468899999999952  2469999999986             4589999


Q ss_pred             EeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        200 TGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       200 tGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ||||||||||+||++||+++|||+|+|||
T Consensus       598 TGPNmgGKSt~lrqvali~imAq~G~~VP  626 (840)
T TIGR01070       598 TGPNMGGKSTYMRQTALIALLAQIGSFVP  626 (840)
T ss_pred             ECCCCCCchHHHHHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999998

>KOG4000|consensus

Probab=99.86  E-value=6.4e-22  Score=164.37  Aligned_cols=129  Identities=36%  Similarity=0.730  Sum_probs=113.0

Q ss_pred             ChHhhhh-hcCCCCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeec-cEEEEEeecccc--cCCCc-E
Q psy13262          1 MNKQVFQ-SFIPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKTESL--FQIDY-I   75 (229)
Q Consensus         1 ~~~~~~~-~~~~~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rk-gRyv~~vk~~~~--~~~~g-i   75 (229)
                      |+|-++. +|+|+++|||+||||+++++||+||..|+++.|.|.|||+|+|..|+.++ .||+|.+|++.+  .+++. |
T Consensus         1 ~~~~~s~a~~~~~~~PIT~~~IVad~nraP~gf~~I~~~~dd~~dADLWrDg~f~~~~~tRYlC~s~s~~keNshlp~~V   80 (291)
T KOG4000|consen    1 EVKDLSEASFLPDNRPITSLHIVADFNRAPKGFSAISRTYDDDSDADLWRDGSFFGRQNTRYLCLSKSEGKENSHLPEYV   80 (291)
T ss_pred             CchhccccccCCCCCcceeEEEEeccccCCCccchheeecccccchhhhhccceeecceeEEEEeecccCcccccCccee
Confidence            3455554 35999999999999999999999999888888888999999997788877 999999998874  45666 9


Q ss_pred             EEEeEEecccCCCCchhhHHHHhhhhhhhhhhhcceeeeecccccccchhhhhh
Q psy13262         76 VENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRN  129 (229)
Q Consensus        76 V~di~~l~~~~~~P~~y~~l~~~~~s~qt~l~e~~~~v~l~~l~~~~~~~~~~d  129 (229)
                      |++++++.+++++|.+|+.+.++.+++++++.|++.++++.++....+++..+.
T Consensus        81 v~~l~vI~~kdp~P~gf~~I~~TaDs~eka~RKk~lcik~~pRd~v~~AI~dIi  134 (291)
T KOG4000|consen   81 VETLQVISDKDPPPKGFSQISRTADSDEKAWRKKQLCIKLSPRDTVTQAITDII  134 (291)
T ss_pred             eEEEEEeecCCCCCccceeeeecccchHHhhhhceeEEEecCCccHHhhheeeE
Confidence            999999999999999999999999999999999999999888777776666655

>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor []

Probab=99.86  E-value=1.4e-22  Score=173.53  Aligned_cols=114  Identities=42%  Similarity=0.724  Sum_probs=65.4

Q ss_pred             CCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeec-cEEEEEeecccccCCCcEEEEeEEecccCCCCchh
Q psy13262         14 KPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKTESLFQIDYIVENICIINEKETPPDGF   92 (229)
Q Consensus        14 ~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rk-gRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~~y   92 (229)
                      +|||+||||+++++||+||++|++|+|++.||+||++ .+|.+| +||+|.+|++. +..+.||+|+.++++++.+|.||
T Consensus         1 ~PIT~v~~v~~~~~cP~gy~~is~T~d~g~dAdlw~~-~~f~~k~~rYLC~s~~~~-~~~~~Vv~di~ii~~k~~~P~Gy   78 (251)
T PF10240_consen    1 RPITAVGIVASKNKCPPGYTVISRTVDQGADADLWKG-GFFGSKSTRYLCFSKEES-GTPGNVVTDIQIIDEKDPIPHGY   78 (251)
T ss_dssp             ----EEEEESSTT---TT-EE--B-TT-S-B---S----TTS-----EEEEE-----GGG-EEEEEEEEEETTS---TT-
T ss_pred             CCcceEEEEecCCCCCCCCeEEEeeccCCCchhhccc-ccccCCCeEEEEEEcccC-CCCCCEEEEEEEecCCCCCCCCc
Confidence            6999999999999999999999999995499999998 557767 99999999996 45689999999999999999999


Q ss_pred             hHHHHhhhhhhhhhhhcceeeeecccccccchhhhhh
Q psy13262         93 CLIARTLDSDQGQICERGGVVDYKPQQSNNTIFSQRN  129 (229)
Q Consensus        93 ~~l~~~~~s~qt~l~e~~~~v~l~~l~~~~~~~~~~d  129 (229)
                      +.+.++.++.+++++|++.|+++.++.++..++..+.
T Consensus        79 ~~i~~t~dt~~~a~rKkrLCvK~~pr~sa~~AV~DI~  115 (251)
T PF10240_consen   79 SYISETVDTKEKALRKKRLCVKLSPRGSAETAVTDII  115 (251)
T ss_dssp             EE--B-TTT--B--SSEEEEEEEEEGGG-S-EEEEEE
T ss_pred             EeccccccchhhhhcceEEEEEeeeccchhhheeeEE
Confidence            9999999999999999999999988777766665554

; PDB: 3TOW_A.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=99.85  E-value=1.1e-21  Score=193.68  Aligned_cols=152  Identities=23%  Similarity=0.322  Sum_probs=108.0

Q ss_pred             EEEEEeecccccCCCc-EEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc-ce--------ee-eecccccccchhh
Q psy13262         59 RYLCVSKTESLFQIDY-IVENICIINEK-ETPPDGFCLIARTLDSDQGQICER-GG--------VV-DYKPQQSNNTIFS  126 (229)
Q Consensus        59 Ryv~~vk~~~~~~~~g-iV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~-~~--------~v-~l~~l~~~~~~~~  126 (229)
                      .|++.++......+++ .++.-...+.. +..|+ ...+++.....+..+.+. ..        +. ....+....++++
T Consensus       471 gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~-l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~~~~~~l~~~~~~la  549 (854)
T PRK05399        471 GYYIEVTKANLDKVPEDYIRRQTLKNAERYITPE-LKELEDKILSAEEKALALEYELFEELREEVAEHIERLQKLAKALA  549 (854)
T ss_pred             eEEEEEEcchhhhCChhhhheeeccCeEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3677776665555665 54442222322 44444 555555554433222221 00        00 1134556788899


Q ss_pred             hhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC---CceeeCCeeEecCccceeccCCCCCCCCcEEEE
Q psy13262        127 QRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG---DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLL  199 (229)
Q Consensus       127 ~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~---~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~l  199 (229)
                      ++|++.+++    ++++|+|++.+.    +.+.+.++|||++..   ...|||||+.+++             +.+.++|
T Consensus       550 ~lD~l~s~A~~a~~~~~~~P~~~~~----~~l~i~~~rHP~le~~~~~~~~vpnd~~l~~-------------~~~~~ii  612 (854)
T PRK05399        550 ELDVLASLAEVAEENNYVRPEFTDD----PGIDIEEGRHPVVEQVLGGEPFVPNDCDLDE-------------ERRLLLI  612 (854)
T ss_pred             HHHHHHHHHHHHHHCCccccEEeCC----CCEEEEeccCcEEecccCCCceEecceeeCC-------------CCcEEEE
Confidence            999999975    688999999874    458899999999953   3679999999985             4589999


Q ss_pred             EeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        200 TGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       200 tGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ||||||||||+||++||+++|||+|+|||
T Consensus       613 TGpN~~GKSt~lr~v~l~~ilAq~G~~VP  641 (854)
T PRK05399        613 TGPNMAGKSTYMRQVALIVLLAQIGSFVP  641 (854)
T ss_pred             ECCCCCCcHHHHHHHHHHHHHHhcCCcee
Confidence            99999999999999999999999999998

>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=99.85  E-value=9.3e-22  Score=192.59  Aligned_cols=96  Identities=29%  Similarity=0.480  Sum_probs=83.4

Q ss_pred             cccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCc--eeeCCeeEecCccceeccCCC
Q psy13262        116 KPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQ--TYIPNSTVIGRCKEDVESGGE  189 (229)
Q Consensus       116 ~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~--~~vp~~~~l~~~~~~~~~~~~  189 (229)
                      ..+.+....++++|++.+++    ..++|+|++.+..+    +.+.++|||++....  .|||||+.+++          
T Consensus       540 ~~l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~~----l~i~~gRHPvvE~~~~~~fVpNd~~L~~----------  605 (843)
T COG0249         540 NELQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSND----LEIKEGRHPVVEAVLDNGFVPNDIDLSG----------  605 (843)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCCC----EEEEecCcchhhhhccCCcccCceeeCC----------
Confidence            45566788899999999876    68899999998643    788999999996322  29999999997          


Q ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                         ..++++||||||||||||||++||+++|||+||+||
T Consensus       606 ---~~~i~lITGPNM~GKSTylRQvali~imAQiGsfVP  641 (843)
T COG0249         606 ---NRRIILITGPNMGGKSTYLRQVALIVILAQIGSFVP  641 (843)
T ss_pred             ---CceEEEEECCCCCccHHHHHHHHHHHHHHHcCCCee
Confidence               349999999999999999999999999999999998

>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]

Probab=99.83  E-value=4.7e-21  Score=185.26  Aligned_cols=165  Identities=21%  Similarity=0.253  Sum_probs=131.1

Q ss_pred             cccccceeeEeeccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc--------ceeee-
Q psy13262         45 ADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICER--------GGVVD-  114 (229)
Q Consensus        45 a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v~-  114 (229)
                      +.+++|..++++++||++|+|+++++.++|+|||.+..+.+ +..|.....+++........-.++        ...+. 
T Consensus       173 ~~~L~e~~v~~r~~r~vlpvk~~fk~~i~giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~  252 (753)
T COG1193         173 AKYLQDRIVTTRDGREVLPVKAEFKGAIKGIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAP  252 (753)
T ss_pred             hHhhhhceEeccCCeEEeHHHHHhhhhcCceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhh
Confidence            78999987777889999999999999999999999999977 888999998877665433111111        00000 


Q ss_pred             -ecccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCC
Q psy13262        115 -YKPQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGE  189 (229)
Q Consensus       115 -l~~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~  189 (229)
                       ...+..+...++.+|++.+..    ...+..|.+.++    -.+.+.+++||++...   +|+++.++.          
T Consensus       253 ~~~~l~~~~~~~~~lD~i~Ak~~~~~~~~~v~P~~~~~----~~l~l~~~~HPll~~~---v~~~i~~~~----------  315 (753)
T COG1193         253 VIPELEILLEIIGELDFIEAKVRYAKALKGVKPDFSND----GVLELLDARHPLLKED---VPNDLELGE----------  315 (753)
T ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHhhccCCCccCCC----ceEEeccccCccCccc---ccccccccc----------
Confidence             012234667788999988854    467788998853    5789999999999652   889888886          


Q ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                         +.+.++|||||+||||+.||++|++.+|+|+|+|+|.
T Consensus       316 ---e~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~i~a  352 (753)
T COG1193         316 ---ELDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLPIPA  352 (753)
T ss_pred             ---ccceeeEecCCCCcceehHHHHHHHHHHHHcCCCeec
Confidence               5689999999999999999999999999999999974

>PF00488 MutS_V: MutS domain V C-terminus

Probab=99.80  E-value=5.6e-20  Score=157.02  Aligned_cols=74  Identities=32%  Similarity=0.547  Sum_probs=58.6

Q ss_pred             CccceEecCCCCCceEEeccccCcccC---CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        139 VCVPTFLGLEEPHPYISALESLYPCAT---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       139 ~~~P~~~~~~~~~~~i~~~~~~hpll~---~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ||+|++.++    ..+.++++|||++.   +...+||||+.+++-            ..+.++|||||||||||+||++|
T Consensus         1 y~~P~~~~~----~~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~------------~~~~~iiTGpN~sGKSt~lk~i~   64 (235)
T PF00488_consen    1 YCRPKISEE----KSLKIKEGRHPLLEEKLENKKFVPNDIELSNN------------KSRIIIITGPNMSGKSTFLKQIG   64 (235)
T ss_dssp             EB-EEEEST----TEEEEEEE--TTHHHHTTTSSC--EEEEESSS------------SSSEEEEESSTTSSHHHHHHHHH
T ss_pred             CcccEEcCC----CCEEEEeccCCEEeccccCCceecceeecCCC------------ceeEEEEeCCCccchhhHHHHHH
Confidence            689999986    37899999999995   246889999999871            23799999999999999999999


Q ss_pred             HHHHHHhcCCCcc
Q psy13262        216 LITILAQMENPQL  228 (229)
Q Consensus       216 l~~~ma~~G~~v~  228 (229)
                      ++++|||+|+|||
T Consensus        65 ~~~ilaq~G~~VP   77 (235)
T PF00488_consen   65 LIVILAQIGCFVP   77 (235)
T ss_dssp             HHHHHHTTT--BS
T ss_pred             HHhhhhhcCceee
Confidence            9999999999998

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>KOG0218|consensus

Probab=99.77  E-value=1.7e-19  Score=169.25  Aligned_cols=97  Identities=25%  Similarity=0.352  Sum_probs=79.6

Q ss_pred             ccccccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccC--CCceeeCCeeEecCccceeccCCCC
Q psy13262        117 PQQSNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEG  190 (229)
Q Consensus       117 ~l~~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~  190 (229)
                      .+..+...++.+||+.+++    ..++|||++.+..   .-|.++++|||.+.  -...|||||+.+..           
T Consensus       762 elrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~---~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~-----------  827 (1070)
T KOG0218|consen  762 ELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ---QEIIIKNGRHPVIESLLVDYFVPNDIMLSP-----------  827 (1070)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch---hhhhhhcCCCchHHHHhhhccCCCcceecC-----------
Confidence            4455677889999999986    5789999999842   23455667777764  12459999999986           


Q ss_pred             CCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        191 NRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       191 ~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                       +..++.+||||||||||.++|++||+++|||+|++||
T Consensus       828 -egerc~IITGPNMGGKSsyIrQvALitIMAQiGsfVP  864 (1070)
T KOG0218|consen  828 -EGERCNIITGPNMGGKSSYIRQVALITIMAQIGSFVP  864 (1070)
T ss_pred             -CCceEEEEeCCCCCCchHHHHHHHHHHHHHHhcCccc
Confidence             2459999999999999999999999999999999998

>KOG0219|consensus

Probab=99.76  E-value=2.3e-19  Score=170.29  Aligned_cols=127  Identities=28%  Similarity=0.451  Sum_probs=100.7

Q ss_pred             CCCCchhhHHHHhhhhhhhhhhhc-----ceeeeecccccccchhhhhhHHHHHH------hCCCccceEecCCCCCceE
Q psy13262         86 ETPPDGFCLIARTLDSDQGQICER-----GGVVDYKPQQSNNTIFSQRNILKDMY------QQGVCVPTFLGLEEPHPYI  154 (229)
Q Consensus        86 ~~~P~~y~~l~~~~~s~qt~l~e~-----~~~v~l~~l~~~~~~~~~~d~l~~~~------~~~~~~P~~~~~~~~~~~i  154 (229)
                      ..+-+.|.....+++..|..+.++     ..|.  .++.+....+|++|++.+++      ..+++||.+.+.+..  -+
T Consensus       540 ~slN~e~~~~qk~Y~~~Q~~ivrevikia~tY~--Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs~--rl  615 (902)
T KOG0219|consen  540 SSLNDEFMSLQKEYDEAQNEIVREIIKIAATYT--PPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGSK--RL  615 (902)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccchh--HH
Confidence            556667777777777777666555     3444  56777888999999998875      467889988876543  35


Q ss_pred             EeccccCcccCCC--ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        155 SALESLYPCATGD--QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       155 ~~~~~~hpll~~~--~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      .+++.|||+++.+  ..|+|||..++..            +.++.+|||||||||||++|++|.+++|||+||+||
T Consensus       616 ~l~~~rHp~lE~Qd~~~fIpNdv~le~~------------~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVP  679 (902)
T KOG0219|consen  616 ELKQSRHPVLEGQDEIPFIPNDVVLEKG------------KCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVP  679 (902)
T ss_pred             HHHhcccchhhccccCCCCCCccccccC------------CceEEEEeCCCcCccchhhhhhhHHHHHHHhCCcee
Confidence            6778899999643  3689999988741            458999999999999999999999999999999998

>KOG0220|consensus

Probab=99.67  E-value=6.4e-17  Score=152.04  Aligned_cols=90  Identities=26%  Similarity=0.337  Sum_probs=75.3

Q ss_pred             cccchhhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCC
Q psy13262        120 SNNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRK  193 (229)
Q Consensus       120 ~~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~  193 (229)
                      ...++.+.+|.|+.++    ..++++|++.+.      +.+.++|||+|..  ...++.|++.+..             +
T Consensus       560 ~iae~~~~lD~l~sfa~~~~~~~y~~P~fT~s------laI~qGRHPILe~i~~ek~i~N~t~~t~-------------~  620 (867)
T KOG0220|consen  560 KLAEAVSMLDMLCSFAHACTLSDYVRPEFTDS------LAIKQGRHPILEKISAEKPIANNTYVTE-------------G  620 (867)
T ss_pred             HHHHHHHHHHHHHHHHHhhccccccccccCCc------eeeccCCCchhhhhcccCcccCcceeec-------------c
Confidence            3566778899888865    457899999873      6677788888853  2457888888887             5


Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      .+..+||||||+||||+||++||+++|||+||.||
T Consensus       621 s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IP  655 (867)
T KOG0220|consen  621 SNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVP  655 (867)
T ss_pred             cceEEEECCCCCcchHHHHHHHHHHHHHHhccCcc
Confidence            68999999999999999999999999999999998

>KOG0217|consensus

Probab=99.61  E-value=7.1e-16  Score=149.54  Aligned_cols=99  Identities=28%  Similarity=0.442  Sum_probs=81.4

Q ss_pred             ccccchhhhhhHHHHHHh------CCCccceEecCCCCCceEEeccccCcccCCC---ceeeCCeeEecCccceeccCCC
Q psy13262        119 QSNNTIFSQRNILKDMYQ------QGVCVPTFLGLEEPHPYISALESLYPCATGD---QTYIPNSTVIGRCKEDVESGGE  189 (229)
Q Consensus       119 ~~~~~~~~~~d~l~~~~~------~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~---~~~vp~~~~l~~~~~~~~~~~~  189 (229)
                      .+..+.++.+|+|.+++.      ...|+|++.+....++++.+..++|||+...   ..|+||++.+++-         
T Consensus       826 ~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~dt~~~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~---------  896 (1125)
T KOG0217|consen  826 QATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTDTPGFLIVKGLRHPCFSLPSTGTSFIPNDVELGGA---------  896 (1125)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccCCCceeEEecccCceeecCcCCCccccchhhcccc---------
Confidence            456777899999999863      3489999988766666889999999999632   3689999999851         


Q ss_pred             CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        190 GNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       190 ~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                        ...+..++||||||||||+||+++++++|||+||=||
T Consensus       897 --~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VP  933 (1125)
T KOG0217|consen  897 --EENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVP  933 (1125)
T ss_pred             --ccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCcc
Confidence              1335566999999999999999999999999998876

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.58  E-value=1.9e-15  Score=127.23  Aligned_cols=60  Identities=32%  Similarity=0.523  Sum_probs=51.2

Q ss_pred             eccccCcccCC-CceeeCCeeEecCccceeccCCCCCCC-CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        156 ALESLYPCATG-DQTYIPNSTVIGRCKEDVESGGEGNRK-PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       156 ~~~~~hpll~~-~~~~vp~~~~l~~~~~~~~~~~~~~~~-~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|||++.. ...+||||+.+++             + .+.++||||||+|||||||+++++++|+|+|++++
T Consensus         2 i~~~rHPll~~~~~~~vpnd~~l~~-------------~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~   63 (213)
T cd03281           2 IQGGRHPLLELFVDSFVPNDTEIGG-------------GGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVP   63 (213)
T ss_pred             cccccCCEEeccCCceEcceEEecC-------------CCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeE
Confidence            35667888752 2479999999986             3 38999999999999999999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0221|consensus

Probab=99.56  E-value=1.2e-16  Score=148.17  Aligned_cols=92  Identities=28%  Similarity=0.413  Sum_probs=76.7

Q ss_pred             ccchhhhhhHHHHHH----hCCCccceEecCCCCCce-EEeccccCcccC-CCceeeCCeeEecCccceeccCCCCCCCC
Q psy13262        121 NNTIFSQRNILKDMY----QQGVCVPTFLGLEEPHPY-ISALESLYPCAT-GDQTYIPNSTVIGRCKEDVESGGEGNRKP  194 (229)
Q Consensus       121 ~~~~~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~-i~~~~~~hpll~-~~~~~vp~~~~l~~~~~~~~~~~~~~~~~  194 (229)
                      .....+++|+|.+++    +++|.+|.++++    ++ +++.+.|||+.+ --+.|+||++.+++            ++.
T Consensus       536 ~l~laSrldvLls~a~~aa~~gy~~P~lv~e----~~il~I~ngrh~l~e~~~dtfvPNst~igg------------dkg  599 (849)
T KOG0221|consen  536 VLDLASRLDVLLSLASAAADYGYSRPRLVPE----VLILRIQNGRHPLMELCADTFVPNSTEIGG------------DKG  599 (849)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCccccH----HHHHHHHcCChhHHHHHHHhcCCCceeecC------------CCc
Confidence            456678999998864    789999999885    33 566677777763 12589999999986            245


Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +..+|||||.||||++||++||+++|||+|++||
T Consensus       600 ri~vITGpNasGKSiYlkqvglivfLahIGsFVP  633 (849)
T KOG0221|consen  600 RIKVITGPNASGKSIYLKQVGLIVFLAHIGSFVP  633 (849)
T ss_pred             eEEEEeCCCCCCceEEEeechhhhHHHhhccccc
Confidence            9999999999999999999999999999999998

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.55  E-value=6.8e-15  Score=122.45  Aligned_cols=59  Identities=34%  Similarity=0.562  Sum_probs=49.9

Q ss_pred             ccccCcccCC-CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        157 LESLYPCATG-DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       157 ~~~~hpll~~-~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +++|||++.. ...++|+++.+++             ..++++||||||+|||||||+++++.+|+|+|++||
T Consensus         3 ~~~~hp~~~~~~~~~~~~~~~i~~-------------~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp   62 (200)
T cd03280           3 REARHPLLPLQGEKVVPLDIQLGE-------------NKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIP   62 (200)
T ss_pred             cccCCCEEeccCCceEcceEEECC-------------CceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcc
Confidence            4567777742 2468999998886             336899999999999999999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.54  E-value=8.6e-15  Score=124.07  Aligned_cols=60  Identities=43%  Similarity=0.743  Sum_probs=49.2

Q ss_pred             ccccCcccC--CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        157 LESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       157 ~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +++|||++.  ....++|||+.++.     .       +.++++|||||||||||+||++|++++|||+|+|||
T Consensus         3 ~~~~hpll~~~~~~~~v~~~~~~~~-----~-------~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vp   64 (222)
T cd03285           3 KEARHPCVEAQDDVAFIPNDVTLTR-----G-------KSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVP   64 (222)
T ss_pred             cccCCCEEeccCCCCeEEeeEEEee-----c-------CCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcC
Confidence            445677764  23568899887764     1       348999999999999999999999999999999997

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.52  E-value=1.3e-14  Score=120.91  Aligned_cols=58  Identities=33%  Similarity=0.429  Sum_probs=51.1

Q ss_pred             eccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        156 ALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       156 ~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++++|||++.+ ..+++||+.++.       +       ++++||||||||||||||++++.++|+++|+||+
T Consensus         2 ~~~~~hp~~~~-~~~v~n~i~l~~-------g-------~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~   59 (199)
T cd03283           2 AKNLGHPLIGR-EKRVANDIDMEK-------K-------NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVC   59 (199)
T ss_pred             CcccCCCeecC-CCeecceEEEcC-------C-------cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEe
Confidence            45678999863 578999998886       1       8999999999999999999999999999999986

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.52  E-value=1.5e-14  Score=122.34  Aligned_cols=60  Identities=42%  Similarity=0.701  Sum_probs=49.4

Q ss_pred             ccccCcccC--CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        157 LESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       157 ~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +++|||++.  ....+||||+.+..     .       +.++++||||||+||||+||+++++++|||+|+|||
T Consensus         3 ~~~rHPll~~~~~~~~v~ndi~l~~-----~-------~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vp   64 (218)
T cd03286           3 EELRHPCLNASTASSFVPNDVDLGA-----T-------SPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVP   64 (218)
T ss_pred             ccccCCEEecccCCCeEEeeeEEee-----c-------CCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccC
Confidence            455777773  12468999988764     2       238999999999999999999999999999999998

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.51  E-value=1.4e-14  Score=122.30  Aligned_cols=60  Identities=37%  Similarity=0.588  Sum_probs=50.8

Q ss_pred             eccccCcccCC---CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        156 ALESLYPCATG---DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       156 ~~~~~hpll~~---~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|||++..   ...++|||+.+..             +.++++||||||+||||+||+++++++|+|+|++||
T Consensus         2 i~~~~hp~~~~~~~~~~~v~n~~~l~~-------------~~~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp   64 (216)
T cd03284           2 IEGGRHPVVEQVLDNEPFVPNDTELDP-------------ERQILLITGPNMAGKSTYLRQVALIALLAQIGSFVP   64 (216)
T ss_pred             cccccCCEEeeccCCCceEeeeEEecC-------------CceEEEEECCCCCChHHHHHHHHHHHHHhccCCeec
Confidence            34567777742   2568999999886             348999999999999999999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.48  E-value=4.3e-14  Score=117.74  Aligned_cols=59  Identities=39%  Similarity=0.606  Sum_probs=51.0

Q ss_pred             eccccCcccC---CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        156 ALESLYPCAT---GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       156 ~~~~~hpll~---~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++++|||++.   ....++|||+.+++              .++++||||||||||||||+++...+|+|+|+++|
T Consensus         2 ~~~~~~p~l~~~~~~~~~~~~~~~l~~--------------~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~   63 (202)
T cd03243           2 IKGGRHPVLLALTKGETFVPNDINLGS--------------GRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP   63 (202)
T ss_pred             cccccCCEEeccccCCceEeeeEEEcC--------------CeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc
Confidence            3566788874   34679999999986              27999999999999999999999999999999986

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.47  E-value=6.3e-14  Score=117.34  Aligned_cols=60  Identities=35%  Similarity=0.545  Sum_probs=49.0

Q ss_pred             ccccCcccCC-CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        157 LESLYPCATG-DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       157 ~~~~hpll~~-~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      .++|||++.. ...+++|++.++.     ..+       +.++|+||||+||||+||+++++++|||+|+|||
T Consensus         3 ~~~~hpll~~~~~~~v~~~~~~~~-----~~~-------~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vp   63 (204)
T cd03282           3 RDSRHPILDRDKKNFIPNDIYLTR-----GSS-------RFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVP   63 (204)
T ss_pred             ccccCCeEeccCCcEEEeeeEEee-----CCC-------cEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcc
Confidence            4567888752 2467788766653     333       8999999999999999999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.44  E-value=9.6e-14  Score=117.68  Aligned_cols=62  Identities=39%  Similarity=0.621  Sum_probs=50.2

Q ss_pred             EeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        155 SALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       155 ~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++.++|||++..  ...++|||+.+.     +..+       ++++|+||||+||||+||+++++++|||+|+|||
T Consensus         2 ~i~~~rHPlle~~~~~~~v~n~i~~~-----~~~g-------~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~   65 (222)
T cd03287           2 LIKEGRHPMIESLLDKSFVPNDIHLS-----AEGG-------YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVP   65 (222)
T ss_pred             eeecccCCEEeccCCCCEEEEeEEEE-----ecCC-------cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence            456678888742  236788876665     3334       8999999999999999999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.38  E-value=2e-13  Score=128.67  Aligned_cols=169  Identities=14%  Similarity=0.214  Sum_probs=114.3

Q ss_pred             CCCCeEEEEeeecC-ccccccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhhh-
Q psy13262         28 CPSGYTVISKTVDQ-DTDADMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLDS-  101 (229)
Q Consensus        28 ~p~g~~~is~t~~~-d~~a~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~s-  101 (229)
                      ++++.=+++.-.+. |.++--|.|+  |+++  |-.++++|++++  ++.|++.|..++..  ..++++|+......+. 
T Consensus       170 ~~pDlLLLDEPTNHLD~~~i~WLe~--~L~~~~gtviiVSHDR~F--Ld~V~t~I~~ld~g~l~~y~Gny~~~~~~r~~~  245 (530)
T COG0488         170 EEPDLLLLDEPTNHLDLESIEWLED--YLKRYPGTVIVVSHDRYF--LDNVATHILELDRGKLTPYKGNYSSYLEQKAER  245 (530)
T ss_pred             cCCCEEEEcCCCcccCHHHHHHHHH--HHHhCCCcEEEEeCCHHH--HHHHhhheEEecCCceeEecCCHHHHHHHHHHH
Confidence            34445555554443 3466789986  5555  889999999998  88999999999876  8888999886654432 


Q ss_pred             ----------hhhhhhhcceeeeeccccccc--chhhhhhHHHHHHhC-CC------ccce-EecC----CCCCceEEec
Q psy13262        102 ----------DQGQICERGGVVDYKPQQSNN--TIFSQRNILKDMYQQ-GV------CVPT-FLGL----EEPHPYISAL  157 (229)
Q Consensus       102 ----------~qt~l~e~~~~v~l~~l~~~~--~~~~~~d~l~~~~~~-~~------~~P~-~~~~----~~~~~~i~~~  157 (229)
                                +++.+.+.+.|++.....++.  ++.++.+.+.++... ..      ..|. +...    ....+++++.
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~  325 (530)
T COG0488         246 LRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFE  325 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEe
Confidence                      345555557777665554444  556666655555421 11      1111 1221    1235677777


Q ss_pred             cccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        158 ESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       158 ~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ++       ...|-+..+++.+++|.+.+|       ++++|+||||+|||||||++
T Consensus       326 ~~-------~~~y~~~~~l~~~~s~~i~~g-------~riaiiG~NG~GKSTLlk~l  368 (530)
T COG0488         326 NV-------SKGYDGGRLLLKDLSFRIDRG-------DRIAIVGPNGAGKSTLLKLL  368 (530)
T ss_pred             cc-------ccccCCCceeecCceEEecCC-------CEEEEECCCCCCHHHHHHHH
Confidence            66       233334458999999999999       99999999999999999988

>KOG0927|consensus

Probab=99.10  E-value=3e-11  Score=112.05  Aligned_cols=158  Identities=22%  Similarity=0.306  Sum_probs=94.0

Q ss_pred             ccccccccceeeEeec-cE--EEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhh-----------hhhhh
Q psy13262         42 DTDADMWRESAFFLRK-TR--YLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLD-----------SDQGQ  105 (229)
Q Consensus        42 d~~a~~~qe~~~~~rk-gR--yv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~-----------s~qt~  105 (229)
                      |.+|..|.|.  ++.+ .|  .|+.+|.+.+  ++|+|++|+.+..+  ..+-++|..+-...+           .+|+.
T Consensus       253 DleA~~wLee--~L~k~d~~~lVi~sh~QDf--ln~vCT~Ii~l~~kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~  328 (614)
T KOG0927|consen  253 DLEAIVWLEE--YLAKYDRIILVIVSHSQDF--LNGVCTNIIHLDNKKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQ  328 (614)
T ss_pred             CHHHHHHHHH--HHHhccCceEEEEecchhh--hhhHhhhhheecccceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhH
Confidence            5688999986  6666 55  7777777766  89999999999888  344566665444322           22222


Q ss_pred             hhhcceeeeeccc---ccccchhhhhhHHHHHHhCCCccceEec-------C--C-CCCceEEeccccCcccCCCceeeC
Q psy13262        106 ICERGGVVDYKPQ---QSNNTIFSQRNILKDMYQQGVCVPTFLG-------L--E-EPHPYISALESLYPCATGDQTYIP  172 (229)
Q Consensus       106 l~e~~~~v~l~~l---~~~~~~~~~~d~l~~~~~~~~~~P~~~~-------~--~-~~~~~i~~~~~~hpll~~~~~~vp  172 (229)
                      +.....++.....   ....++.+..+.+..+...+.......+       .  + .++|++...+.       ...|-+
T Consensus       329 i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~~f~~vg~~p~pvi~~~nv-------~F~y~~  401 (614)
T KOG0927|consen  329 IAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSFRFPEVGKIPPPVIMVQNV-------SFGYSD  401 (614)
T ss_pred             HHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEEEcccccCCCCCeEEEecc-------ccCCCC
Confidence            2222333321111   1122233333333333332322211111       1  1 24667766654       234444


Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      +-..+.+++|.++.+       ..++++||||+|||||||++ +.+
T Consensus       402 ~~~iy~~l~fgid~~-------srvAlVGPNG~GKsTLlKl~~gdl  440 (614)
T KOG0927|consen  402 NPMIYKKLNFGIDLD-------SRVALVGPNGAGKSTLLKLITGDL  440 (614)
T ss_pred             cchhhhhhhcccCcc-------cceeEecCCCCchhhhHHHHhhcc
Confidence            546778888999888       99999999999999999988 443

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.07  E-value=1.9e-10  Score=92.64  Aligned_cols=51  Identities=31%  Similarity=0.518  Sum_probs=44.0

Q ss_pred             ccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHh----------cCCCcc
Q psy13262        159 SLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ----------MENPQL  228 (229)
Q Consensus       159 ~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~----------~G~~v~  228 (229)
                      .+||++     ++||++.+.+              .+..+||||||+||||+||+++++..|++          +|++++
T Consensus         5 ~~~~~~-----~~~~~i~~~~--------------~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~   65 (162)
T cd03227           5 GRFPSY-----FVPNDVTFGE--------------GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVA   65 (162)
T ss_pred             CCCCEE-----EeccEEecCC--------------CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcce
Confidence            467754     6899888875              26999999999999999999999999999          998875

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.99  E-value=3.6e-10  Score=109.31  Aligned_cols=167  Identities=18%  Similarity=0.252  Sum_probs=96.1

Q ss_pred             CCCeEEEEeeecCcccc--ccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhh---
Q psy13262         29 PSGYTVISKTVDQDTDA--DMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTL---   99 (229)
Q Consensus        29 p~g~~~is~t~~~d~~a--~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~---   99 (229)
                      .+.+-+++.-..+ +|.  ..|.++  ++++  +..++.+|+...  +..++..+..+...  ...+++|..+....   
T Consensus       167 ~P~lLLLDEPtn~-LD~~~~~~L~~--~L~~~~~tviivsHd~~~--l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~  241 (638)
T PRK10636        167 RSDLLLLDEPTNH-LDLDAVIWLEK--WLKSYQGTLILISHDRDF--LDPIVDKIIHIEQQSLFEYTGNYSSFEVQRATR  241 (638)
T ss_pred             CCCEEEEcCCCCc-CCHHHHHHHHH--HHHhCCCeEEEEeCCHHH--HHHhcCEEEEEeCCEEEEecCCHHHHHHHHHHH
Confidence            3456667766665 544  445553  3333  677777777664  45566666666655  33466666654322   


Q ss_pred             --------hhhhhhhhhcceeeeeccccc--ccchhhhhhHHHHHHhCCC----ccceEec---CCCCCceEEeccccCc
Q psy13262        100 --------DSDQGQICERGGVVDYKPQQS--NNTIFSQRNILKDMYQQGV----CVPTFLG---LEEPHPYISALESLYP  162 (229)
Q Consensus       100 --------~s~qt~l~e~~~~v~l~~l~~--~~~~~~~~d~l~~~~~~~~----~~P~~~~---~~~~~~~i~~~~~~hp  162 (229)
                              +.++..+.+...+++.....+  ...+.++.+.+..+.....    ..+.+..   .....+++++.++   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---  318 (638)
T PRK10636        242 LAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKV---  318 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEecCCCccCCCceEEEEee---
Confidence                    223334444455553211111  1222344444433321110    0111221   1113456777765   


Q ss_pred             ccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        163 CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       163 ll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                           ...+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus       319 -----~~~y~~~~il~~isl~i~~G-------e~~~l~G~NGsGKSTLlk~l~  359 (638)
T PRK10636        319 -----SAGYGDRIILDSIKLNLVPG-------SRIGLLGRNGAGKSTLIKLLA  359 (638)
T ss_pred             -----EEEeCCeeeeccceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence                 34457778999999999999       999999999999999999984

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.93  E-value=1.4e-09  Score=92.50  Aligned_cols=50  Identities=24%  Similarity=0.378  Sum_probs=44.3

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++|+++++        .-.+.+..+|++++|+|++|       ++|+|+||||+|||||||+++
T Consensus        29 ~~li~l~~v--------~v~r~gk~iL~~isW~V~~g-------e~W~I~G~NGsGKTTLL~ll~   78 (257)
T COG1119          29 EPLIELKNV--------SVRRNGKKILGDLSWQVNPG-------EHWAIVGPNGAGKTTLLSLLT   78 (257)
T ss_pred             cceEEecce--------EEEECCEeeccccceeecCC-------CcEEEECCCCCCHHHHHHHHh
Confidence            467888776        45667889999999999999       999999999999999999984

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.91  E-value=1.3e-09  Score=93.70  Aligned_cols=51  Identities=33%  Similarity=0.520  Sum_probs=42.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      +.++++++        .-.+.+...|.+++|++++|       +.++|+||||+|||||+|++ ||+
T Consensus         3 ~~i~v~nl--------~v~y~~~~vl~~i~l~v~~G-------~~~~iiGPNGaGKSTLlK~iLGll   54 (254)
T COG1121           3 PMIEVENL--------TVSYGNRPVLEDISLSVEKG-------EITALIGPNGAGKSTLLKAILGLL   54 (254)
T ss_pred             cEEEEeee--------EEEECCEeeeeccEEEEcCC-------cEEEEECCCCCCHHHHHHHHhCCC
Confidence            45677765        44566557999999999999       99999999999999999988 543

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.89  E-value=1.7e-09  Score=104.66  Aligned_cols=167  Identities=13%  Similarity=0.179  Sum_probs=89.9

Q ss_pred             CCCeEEEEeeecCcccc--ccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhh--
Q psy13262         29 PSGYTVISKTVDQDTDA--DMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLD--  100 (229)
Q Consensus        29 p~g~~~is~t~~~d~~a--~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~--  100 (229)
                      ++..-+++.-..+ +|.  .-|.++  ++++  +..++.+|+...  +..++..+..+...  ...+++|..+....+  
T Consensus       174 ~P~lLLLDEPt~~-LD~~~~~~L~~--~L~~~~~tvlivsHd~~~--l~~~~d~i~~L~~G~i~~~~g~~~~~~~~~~~~  248 (635)
T PRK11147        174 NPDVLLLDEPTNH-LDIETIEWLEG--FLKTFQGSIIFISHDRSF--IRNMATRIVDLDRGKLVSYPGNYDQYLLEKEEA  248 (635)
T ss_pred             CCCEEEEcCCCCc-cCHHHHHHHHH--HHHhCCCEEEEEeCCHHH--HHHhcCeEEEEECCEEEEecCCHHHHHHHHHHH
Confidence            4566777776666 544  334443  3333  677777777664  44555555666555  234566665433221  


Q ss_pred             ---------hhhhhhhhcceeeeecccccccchhhhhhHHHHHH--hCC----CccceEecC---CCCCceEEeccccCc
Q psy13262        101 ---------SDQGQICERGGVVDYKPQQSNNTIFSQRNILKDMY--QQG----VCVPTFLGL---EEPHPYISALESLYP  162 (229)
Q Consensus       101 ---------s~qt~l~e~~~~v~l~~l~~~~~~~~~~d~l~~~~--~~~----~~~P~~~~~---~~~~~~i~~~~~~hp  162 (229)
                               .+++.+.....+++...........++.+.+..+.  ...    ...+.+...   ....+++++.++   
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l---  325 (635)
T PRK11147        249 LRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAKMQVEEASRSGKIVFEMENV---  325 (635)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCceeEEeCCCCCCCCceEEEeee---
Confidence                     12223323333432211000111133333332221  100    001112111   122456777665   


Q ss_pred             ccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        163 CATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       163 ll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                           ...+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus       326 -----~~~~~~~~il~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~l~  366 (635)
T PRK11147        326 -----NYQIDGKQLVKDFSAQVQRG-------DKIALIGPNGCGKTTLLKLML  366 (635)
T ss_pred             -----EEEECCeEEEcCcEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence                 34457778999999999999       999999999999999999984

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.88  E-value=2.8e-09  Score=92.00  Aligned_cols=41  Identities=22%  Similarity=0.327  Sum_probs=37.4

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .-.|++..++++++|++..|       ++++|.||||||||||||+++
T Consensus         9 s~~y~~~~il~~ls~~i~~G-------~i~~iiGpNG~GKSTLLk~l~   49 (258)
T COG1120           9 SFGYGGKPILDDLSFSIPKG-------EITGILGPNGSGKSTLLKCLA   49 (258)
T ss_pred             EEEECCeeEEecceEEecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            34567899999999999999       999999999999999999984

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.78  E-value=1e-08  Score=87.94  Aligned_cols=51  Identities=25%  Similarity=0.294  Sum_probs=42.7

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .|.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         4 ~~~l~~~~l--------~~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14242          4 PPKMEARGL--------SFFYGDFQALHDISLEFEQN-------QVTALIGPSGCGKSTFLRCLNR   54 (253)
T ss_pred             CcEEEEeee--------EEEECCeeeecceeEEEeCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            467777765        33456667999999999999       9999999999999999999953

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.76  E-value=1.4e-08  Score=85.85  Aligned_cols=51  Identities=20%  Similarity=0.358  Sum_probs=42.1

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++++++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         5 ~~~i~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   55 (225)
T PRK10247          5 SPLLQLQNV--------GYLAGDAKILNNISFSLRAG-------EFKLITGPSGCGKSTLLKIVAS   55 (225)
T ss_pred             CceEEEecc--------EEeeCCceeeeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            356777665        33346667999999999999       9999999999999999999854

>KOG0066|consensus

Probab=98.75  E-value=4e-09  Score=96.37  Aligned_cols=156  Identities=13%  Similarity=0.258  Sum_probs=91.8

Q ss_pred             CccccccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhhhhhhhhhhc----cee
Q psy13262         41 QDTDADMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLDSDQGQICER----GGV  112 (229)
Q Consensus        41 ~d~~a~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~s~qt~l~e~----~~~  112 (229)
                      -|+.|..|.|+  |++.  ..+++++++..+  ++.||+||.+++..  ..+.++|+.+...|...+....+.    +.-
T Consensus       443 LDLNAVIWLdN--YLQgWkKTLLIVSHDQgF--LD~VCtdIIHLD~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~  518 (807)
T KOG0066|consen  443 LDLNAVIWLDN--YLQGWKKTLLIVSHDQGF--LDSVCTDIIHLDNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQ  518 (807)
T ss_pred             cccceeeehhh--HHhhhhheeEEEecccch--HHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788999997  6665  778888887766  79999999999877  777889988777665443332221    000


Q ss_pred             eeecccccccchhhhhhHHHHHH---h----------CCCccceE-----------ecC---CCCCceEEeccccCcccC
Q psy13262        113 VDYKPQQSNNTIFSQRNILKDMY---Q----------QGVCVPTF-----------LGL---EEPHPYISALESLYPCAT  165 (229)
Q Consensus       113 v~l~~l~~~~~~~~~~d~l~~~~---~----------~~~~~P~~-----------~~~---~~~~~~i~~~~~~hpll~  165 (229)
                      ++--...--+..+++-..-.++.   +          .+.-.|++           ..+   ....|++-+.++      
T Consensus       519 LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapELL~RpKEY~VkF~FPep~~L~PPvLGlH~V------  592 (807)
T KOG0066|consen  519 LKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPELLQRPKEYSVKFQFPEPTKLNPPVLGLHDV------  592 (807)
T ss_pred             HHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHHHHhCchheEEEEecCCCCCCCCCeeecccc------
Confidence            00000000111122111111111   0          00011111           111   112355555443      


Q ss_pred             CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        166 GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       166 ~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                       ...|.+.+..+..++|-|...       ++++|+||||-||||||+.+
T Consensus       593 -tFgy~gqkpLFkkldFGiDmd-------SRiaIVGPNGVGKSTlLkLL  633 (807)
T KOG0066|consen  593 -TFGYPGQKPLFKKLDFGIDMD-------SRIAIVGPNGVGKSTLLKLL  633 (807)
T ss_pred             -cccCCCCCchhhccccccccc-------ceeEEECCCCccHHHHHHHH
Confidence             234556677888888888877       89999999999999999976

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.72  E-value=2.7e-08  Score=86.28  Aligned_cols=50  Identities=26%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...++....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        19 ~~l~~~nl--------~~~~~~~~il~~vsl~i~~G-------e~~~I~G~nGsGKSTLl~~l~G   68 (267)
T PRK14237         19 IALSTKDL--------HVYYGKKEAIKGIDMQFEKN-------KITALIGPSGSGKSTYLRSLNR   68 (267)
T ss_pred             eEEEEeeE--------EEEECCeeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            46777765        33346667999999999999       9999999999999999999954

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.71  E-value=2.4e-08  Score=83.74  Aligned_cols=50  Identities=30%  Similarity=0.408  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        10 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   59 (214)
T PRK13543         10 PLLAAHAL--------AFSRNEEPVFGPLDFHVDAG-------EALLVQGDNGAGKTTLLRVLAG   59 (214)
T ss_pred             ceEEEeeE--------EEecCCceeeecceEEECCC-------CEEEEEcCCCCCHHHHHHHHhC
Confidence            56777665        33456667999999999999       9999999999999999999953

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.70  E-value=2.5e-08  Score=86.45  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=43.0

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.+++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        19 ~~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   69 (268)
T PRK14248         19 EHILEVKDL--------SIYYGEKRAVNDISMDIEKH-------AVTALIGPSGCGKSTFLRSINR   69 (268)
T ss_pred             CceEEEEEE--------EEEeCCceeeeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            356777766        33456678999999999999       9999999999999999999944

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.70  E-value=2.6e-08  Score=86.52  Aligned_cols=50  Identities=20%  Similarity=0.266  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         6 ~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   55 (269)
T PRK11831          6 NLVDMRGV--------SFTRGNRCIFDNISLTVPRG-------KITAIMGPSGIGKTTLLRLIGG   55 (269)
T ss_pred             ceEEEeCe--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            45666665        33456677899999999999       9999999999999999999953

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.70  E-value=2.4e-08  Score=85.66  Aligned_cols=50  Identities=22%  Similarity=0.198  Sum_probs=40.6

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus         2 ~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   51 (253)
T TIGR02323         2 PLLQVSGL--------SKSYGGGKGCRDVSFDLYPG-------EVLGIVGESGSGKSTLLGCLAG   51 (253)
T ss_pred             ceEEEeee--------EEEeCCceEeecceEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            34566554        33446667899999999999       9999999999999999999854

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.69  E-value=2.4e-08  Score=85.03  Aligned_cols=41  Identities=22%  Similarity=0.318  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   50 (242)
T TIGR03411        10 VSFDGFKALNDLSLYVDPG-------ELRVIIGPNGAGKTTMMDVITG   50 (242)
T ss_pred             EEcCCeEEeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            3456667899999999999       9999999999999999999953

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.69  E-value=2.2e-08  Score=84.18  Aligned_cols=40  Identities=25%  Similarity=0.336  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   48 (220)
T cd03265           9 KYGDFEAVRGVSFRVRRG-------EIFGLLGPNGAGKTTTIKMLTT   48 (220)
T ss_pred             EECCEEeeeceeEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            346667899999999999       9999999999999999999943

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.69  E-value=2.9e-08  Score=82.82  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (207)
T PRK13539         10 CVRGGRVLFSGLSFTLAAG-------EALVLTGPNGSGKTTLLRLIAG   50 (207)
T ss_pred             EEECCeEEEeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            3456777899999999999       9999999999999999999844

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.68  E-value=2.3e-08  Score=83.55  Aligned_cols=38  Identities=29%  Similarity=0.438  Sum_probs=34.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   47 (213)
T cd03259          10 YGSVRALDDLSLTVEPG-------EFLALLGPSGCGKTTLLRLIA   47 (213)
T ss_pred             eCCeeeecceeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            45667899999999999       999999999999999999984

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.68  E-value=2.7e-08  Score=83.47  Aligned_cols=42  Identities=31%  Similarity=0.453  Sum_probs=38.7

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++....|+++++++.+|       ++++|.||+|||||||||++-.
T Consensus         9 ~K~fg~~~VLkgi~l~v~~G-------evv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126           9 SKSFGDKEVLKGISLSVEKG-------EVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             eEEeCCeEEecCcceeEcCC-------CEEEEECCCCCCHHHHHHHHHC
Confidence            56778889999999999999       9999999999999999999843

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.68  E-value=2.4e-08  Score=84.97  Aligned_cols=40  Identities=23%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   48 (243)
T TIGR01978         9 SVEDKEILKGVNLTVKKG-------EIHAIMGPNGSGKSTLSKTIAG   48 (243)
T ss_pred             EECCEEEEeccceEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            346667899999999999       9999999999999999999944

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.67  E-value=3.1e-08  Score=87.55  Aligned_cols=49  Identities=27%  Similarity=0.300  Sum_probs=41.0

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         3 ~~i~~~~l--------~~~~~~~~~l~~vsl~i~~G-------e~~~l~G~NGaGKSTLl~~l~   51 (303)
T TIGR01288         3 VAIDLVGV--------SKSYGDKVVVNDLSFTIARG-------ECFGLLGPNGAGKSTIARMLL   51 (303)
T ss_pred             cEEEEEeE--------EEEeCCeEEEcceeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            34566655        34456677999999999999       999999999999999999994

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.4e-08  Score=85.83  Aligned_cols=50  Identities=30%  Similarity=0.298  Sum_probs=42.2

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        12 ~~l~i~nl--------~~~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   61 (269)
T PRK14259         12 IIISLQNV--------TISYGTFEAVKNVFCDIPRG-------KVTALIGPSGCGKSTVLRSLNR   61 (269)
T ss_pred             ceEEEEeE--------EEEECCEEEEcceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            56777765        34456677999999999999       9999999999999999999943

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.67  E-value=3e-08  Score=84.38  Aligned_cols=41  Identities=24%  Similarity=0.413  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (239)
T cd03296          10 KRFGDFVALDDVSLDIPSG-------ELVALLGPSGSGKTTLLRLIAG   50 (239)
T ss_pred             EEECCEEeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            3456677999999999999       9999999999999999999943

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.67  E-value=2.3e-08  Score=83.75  Aligned_cols=35  Identities=29%  Similarity=0.520  Sum_probs=32.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        17 ~~il~~~s~~i~~G-------~~~~l~G~nGsGKSTLl~~i~   51 (218)
T cd03255          17 VQALKGVSLSIEKG-------EFVAIVGPSGSGKSTLLNILG   51 (218)
T ss_pred             eeEEeeeEEEEcCC-------CEEEEEcCCCCCHHHHHHHHh
Confidence            57899999999999       999999999999999999994

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.1e-08  Score=84.96  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        12 ~~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   52 (253)
T PRK14267         12 VYYGSNHVIKGVDLKIPQN-------GVFALMGPSGCGKSTLLRTFNR   52 (253)
T ss_pred             EEeCCeeeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            3456677999999999999       9999999999999999999943

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.4e-08  Score=85.08  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=42.3

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.++++++        ...++....+++++|++.+|       ++++|+||||+|||||||+++.+
T Consensus        11 ~~l~i~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G~   61 (259)
T PRK14274         11 EVYQINGM--------NLWYGQHHALKNINLSIPEN-------EVTAIIGPSGCGKSTFIKTLNLM   61 (259)
T ss_pred             ceEEEeeE--------EEEECCeeeEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence            56777765        33456667999999999999       99999999999999999999543

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.2e-08  Score=84.78  Aligned_cols=49  Identities=22%  Similarity=0.425  Sum_probs=40.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         4 ~~l~~~~l--------~~~~~~~~~l~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   52 (252)
T PRK14239          4 PILQVSDL--------SVYYNKKKALNSVSLDFYPN-------EITALIGPSGSGKSTLLRSIN   52 (252)
T ss_pred             ceEEEEee--------EEEECCeeeeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            45566654        33456667899999999999       999999999999999999994

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.67  E-value=2.5e-08  Score=83.11  Aligned_cols=39  Identities=31%  Similarity=0.390  Sum_probs=35.2

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~l~~v~~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   48 (210)
T cd03269          10 FGRVTALDDISFSVEKG-------EIFGLLGPNGAGKTTTIRMILG   48 (210)
T ss_pred             ECCEEEEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            45667899999999999       9999999999999999999953

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.4e-08  Score=85.19  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=40.9

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        12 ~~l~~~~l--------~~~~~~~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   61 (260)
T PRK10744         12 SKIQVRNL--------NFYYGKFHALKNINLDIAKN-------QVTAFIGPSGCGKSTLLRTFNR   61 (260)
T ss_pred             ceEEEEEE--------EEEeCCeEEeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            34566554        33346667899999999999       9999999999999999999953

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.67  E-value=2.4e-08  Score=84.72  Aligned_cols=39  Identities=33%  Similarity=0.502  Sum_probs=35.3

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         9 ~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   47 (235)
T cd03261           9 SFGGRTVLKGVDLDVRRG-------EILAIIGPSGSGKSTLLRLIV   47 (235)
T ss_pred             EECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            345667899999999999       999999999999999999994

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.67  E-value=2.7e-08  Score=83.70  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=32.8

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        19 ~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   53 (228)
T cd03257          19 KALDDVSFSIKKG-------ETLGLVGESGSGKSTLARAILG   53 (228)
T ss_pred             eeecCceeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999       9999999999999999999943

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.67  E-value=3.3e-08  Score=85.31  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++++.++        ...++....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus         3 ~~l~~~nl--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   52 (262)
T PRK09984          3 TIIRVEKL--------AKTFNQHQALHAVDLNIHHG-------EMVALLGPSGSGKSTLLRHLSG   52 (262)
T ss_pred             cEEEEeeE--------EEEeCCeEEEecceEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            45666655        34456778999999999999       9999999999999999999953

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.67  E-value=2.8e-08  Score=82.89  Aligned_cols=40  Identities=30%  Similarity=0.487  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~~l~~~s~~i~~G-------~~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03262           9 SFGDFHVLKGIDLTVKKG-------EVVVIIGPSGSGKSTLLRCINL   48 (213)
T ss_pred             EECCeEeecCceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            346667899999999999       9999999999999999999943

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.9e-08  Score=84.47  Aligned_cols=50  Identities=20%  Similarity=0.302  Sum_probs=41.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         6 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   55 (254)
T PRK14273          6 AIIETENL--------NLFYTDFKALNNINIKILKN-------SITALIGPSGCGKSTFLRTLNR   55 (254)
T ss_pred             ceEEEeee--------EEEeCCceeecceeeEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45667665        33446667899999999999       9999999999999999999843

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.67  E-value=3.4e-08  Score=84.54  Aligned_cols=40  Identities=25%  Similarity=0.398  Sum_probs=35.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        12 ~~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14247         12 SFGQVEVLDGVNLEIPDN-------TITALMGPSGSGKSTLLRVFNR   51 (250)
T ss_pred             EECCeeeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            346667899999999999       9999999999999999999954

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.66  E-value=2.6e-08  Score=83.09  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   48 (213)
T cd03301           9 RFGNVTALDDLNLDIADG-------EFVVLLGPSGCGKTTTLRMIAG   48 (213)
T ss_pred             EECCeeeeeceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            346667899999999999       9999999999999999999943

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.3e-08  Score=83.80  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=32.8

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        22 ~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   56 (233)
T PRK11629         22 TDVLHNVSFSIGEG-------EMMAIVGSSGSGKSTLLHLLG   56 (233)
T ss_pred             eeeEEeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999       999999999999999999994

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.66  E-value=3.3e-08  Score=84.03  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=36.1

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   49 (236)
T TIGR03864        10 AYGARRALDDVSFTVRPG-------EFVALLGPNGAGKSTLFSLLTR   49 (236)
T ss_pred             EECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            356677999999999999       9999999999999999999953

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.66  E-value=4.2e-08  Score=84.92  Aligned_cols=51  Identities=18%  Similarity=0.263  Sum_probs=42.2

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.+++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         8 ~~~l~i~~v--------~~~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   58 (264)
T PRK14243          8 ETVLRTENL--------NVYYGSFLAVKNVWLDIPKN-------QITAFIGPSGCGKSTILRCFNR   58 (264)
T ss_pred             ceEEEEeee--------EEEECCEEEeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            356677665        33456677899999999999       9999999999999999999853

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.66  E-value=3.1e-08  Score=83.88  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=32.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        19 ~il~~~s~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   53 (233)
T cd03258          19 TALKDVSLSVPKG-------EIFGIIGRSGAGKSTLIRCING   53 (233)
T ss_pred             eeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            7899999999999       9999999999999999999843

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=3.9e-08  Score=84.31  Aligned_cols=50  Identities=22%  Similarity=0.307  Sum_probs=41.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus         4 ~~l~~~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   53 (252)
T PRK14255          4 KIITSSDV--------HLFYGKFEALKGIDLDFNQN-------EITALIGPSGCGKSTYLRTLNR   53 (252)
T ss_pred             ceEEEEeE--------EEEECCeeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45666654        33456678999999999999       9999999999999999999954

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.66  E-value=2.6e-08  Score=83.68  Aligned_cols=36  Identities=33%  Similarity=0.453  Sum_probs=33.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        17 ~~il~~vs~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   52 (220)
T cd03293          17 VTALEDISLSVEEG-------EFVALVGPSGCGKSTLLRIIAG   52 (220)
T ss_pred             eEEEeceeEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            57899999999999       9999999999999999999943

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.66  E-value=2.9e-08  Score=83.84  Aligned_cols=41  Identities=22%  Similarity=0.335  Sum_probs=38.2

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+|+....+.+++|++..|       +++.|.||||+||||+||+|.
T Consensus        10 ~~~YG~~~~L~gvsl~v~~G-------eiv~llG~NGaGKTTlLkti~   50 (237)
T COG0410          10 SAGYGKIQALRGVSLEVERG-------EIVALLGRNGAGKTTLLKTIM   50 (237)
T ss_pred             eecccceeEEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            56788889999999999999       999999999999999999993

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.66  E-value=2.9e-08  Score=83.18  Aligned_cols=35  Identities=34%  Similarity=0.437  Sum_probs=32.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        19 ~il~~~sl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   53 (218)
T cd03266          19 QAVDGVSFTVKPG-------EVTGLLGPNGAGKTTTLRMLAG   53 (218)
T ss_pred             eeecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999       9999999999999999999954

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.66  E-value=3e-08  Score=85.75  Aligned_cols=49  Identities=20%  Similarity=0.255  Sum_probs=41.2

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        11 ~~l~i~~l--------~~~~~~~~il~~isl~i~~G-------e~~~I~G~NGsGKSTLlk~l~   59 (257)
T PRK11247         11 TPLLLNAV--------SKRYGERTVLNQLDLHIPAG-------QFVAVVGRSGCGKSTLLRLLA   59 (257)
T ss_pred             CcEEEEEE--------EEEECCcceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            55677665        33456667899999999999       999999999999999999984

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.66  E-value=3.8e-08  Score=84.20  Aligned_cols=40  Identities=30%  Similarity=0.514  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        12 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK11264         12 KFHGQTVLHGIDLEVKPG-------EVVAIIGPSGSGKTTLLRCINL   51 (250)
T ss_pred             EECCeeeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            456667999999999999       9999999999999999999843

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.66  E-value=3.4e-08  Score=85.07  Aligned_cols=41  Identities=29%  Similarity=0.422  Sum_probs=36.3

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        12 ~~~~~~~vl~~vs~~i~~G-------e~~~I~G~NGsGKSTLl~~i~G   52 (251)
T PRK09544         12 VSFGQRRVLSDVSLELKPG-------KILTLLGPNGAGKSTLVRVVLG   52 (251)
T ss_pred             EEECCceEEEeEEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            3456667999999999999       9999999999999999999843

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=3.9e-08  Score=84.32  Aligned_cols=50  Identities=18%  Similarity=0.227  Sum_probs=41.2

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      |.+++.++        ...++....+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         3 ~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14270          3 IKMESKNL--------NLWYGEKQALNDINLPIYEN-------KITALIGPSGCGKSTFLRCLNR   52 (251)
T ss_pred             cEEEEEEe--------EEEECCeeeeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            55666654        33346667899999999999       9999999999999999999954

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.66  E-value=3.7e-08  Score=84.39  Aligned_cols=41  Identities=22%  Similarity=0.344  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        11 ~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14245         11 FWYGDFHALKGISMEIEEK-------SVVAFIGPSGCGKSTFLRLFNR   51 (250)
T ss_pred             EEECCEeEEeeeeEEEeCC-------CEEEEECCCCCCHHHHHHHHhh
Confidence            3456667899999999999       9999999999999999999954

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.66  E-value=3.6e-08  Score=88.64  Aligned_cols=49  Identities=29%  Similarity=0.289  Sum_probs=42.6

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        40 ~~i~i~nl--------~k~y~~~~~l~~is~~i~~G-------ei~gLlGpNGaGKSTLl~~L~   88 (340)
T PRK13536         40 VAIDLAGV--------SKSYGDKAVVNGLSFTVASG-------ECFGLLGPNGAGKSTIARMIL   88 (340)
T ss_pred             eeEEEEEE--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            56777766        44567778999999999999       999999999999999999984

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=3.1e-08  Score=85.43  Aligned_cols=39  Identities=23%  Similarity=0.398  Sum_probs=35.2

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   48 (255)
T PRK11248         10 DYGGKPALEDINLTLESG-------ELLVVLGPSGCGKTTLLNLIA   48 (255)
T ss_pred             EeCCeeeEeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            345667899999999999       999999999999999999994

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.65  E-value=3.1e-08  Score=79.82  Aligned_cols=40  Identities=30%  Similarity=0.321  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+.+++|++++|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~vl~~i~~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   48 (163)
T cd03216           9 RFGGVKALDGVSLSVRRG-------EVHALLGENGAGKSTLMKILSG   48 (163)
T ss_pred             EECCeEEEeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            346667899999999999       9999999999999999999943

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.65  E-value=2.9e-08  Score=83.86  Aligned_cols=39  Identities=28%  Similarity=0.402  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         9 ~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   47 (230)
T TIGR03410         9 YYGQSHILRGVSLEVPKG-------EVTCVLGRNGVGKTTLLKTLM   47 (230)
T ss_pred             EeCCeEEecceeeEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            456678999999999999       999999999999999999994

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=4.3e-08  Score=85.57  Aligned_cols=51  Identities=25%  Similarity=0.378  Sum_probs=43.8

Q ss_pred             CCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        150 PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       150 ~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+.+.+.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        18 ~~~~l~i~nl--------~~~~~~~~il~~vs~~i~~G-------e~~~I~G~nGsGKSTLl~~l~   68 (276)
T PRK14271         18 AAPAMAAVNL--------TLGFAGKTVLDQVSMGFPAR-------AVTSLMGPTGSGKTTFLRTLN   68 (276)
T ss_pred             cCcEEEEeeE--------EEEECCEEEeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            3567777776        44567778999999999999       999999999999999999994

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=4.3e-08  Score=85.43  Aligned_cols=50  Identities=16%  Similarity=0.284  Sum_probs=42.1

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        18 ~~~l~~~nl--------~~~~~~~~~l~~vs~~i~~G-------e~~~IiG~nGsGKSTLl~~l~   67 (274)
T PRK14265         18 HSVFEVEGV--------KVFYGGFLALVDVHLKIPAK-------KIIAFIGPSGCGKSTLLRCFN   67 (274)
T ss_pred             CceEEEeeE--------EEEeCCeEEEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            457777765        33456667899999999999       999999999999999999995

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.65  E-value=3e-08  Score=82.52  Aligned_cols=39  Identities=26%  Similarity=0.339  Sum_probs=35.5

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~l~~~~~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   48 (208)
T cd03268          10 YGKKRVLDDISLHVKKG-------EIYGFLGPNGAGKTTTMKIILG   48 (208)
T ss_pred             ECCeEeEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            46667999999999999       9999999999999999999953

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=4e-08  Score=84.30  Aligned_cols=50  Identities=24%  Similarity=0.299  Sum_probs=41.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++++.++        ...+++...+.+++|++++|       ++++|+||||+|||||||+++-
T Consensus         4 ~~l~~~~l--------~~~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   53 (255)
T PRK11300          4 PLLSVSGL--------MMRFGGLLAVNNVNLEVREQ-------EIVSLIGPNGAGKTTVFNCLTG   53 (255)
T ss_pred             ceEEEeeE--------EEEECCEEEEEeeeeEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            35666655        33456778999999999999       9999999999999999999843

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.65  E-value=2.9e-08  Score=83.26  Aligned_cols=39  Identities=23%  Similarity=0.296  Sum_probs=34.9

Q ss_pred             eCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++  ...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (220)
T cd03263          10 YKKGTKPAVDDLSLNVYKG-------EIFGLLGHNGAGKTTTLKMLTG   50 (220)
T ss_pred             eCCCCceeecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            454  57899999999999       9999999999999999999953

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.65  E-value=3.9e-08  Score=87.14  Aligned_cols=49  Identities=27%  Similarity=0.295  Sum_probs=41.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|.||||+|||||||+++
T Consensus         6 ~~i~i~~l--------~k~~~~~~~l~~vsl~i~~G-------ei~gllGpNGaGKSTLl~~l~   54 (306)
T PRK13537          6 APIDFRNV--------EKRYGDKLVVDGLSFHVQRG-------ECFGLLGPNGAGKTTTLRMLL   54 (306)
T ss_pred             ceEEEEeE--------EEEECCeEEEecceEEEeCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            35666665        44557778999999999999       999999999999999999984

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.65  E-value=4.3e-08  Score=82.72  Aligned_cols=35  Identities=26%  Similarity=0.357  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        24 ~~l~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   58 (228)
T PRK10584         24 SILTGVELVVKRG-------ETIALIGESGSGKSTLLAILAG   58 (228)
T ss_pred             EEEeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence            5899999999999       9999999999999999999953

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=4e-08  Score=84.34  Aligned_cols=50  Identities=20%  Similarity=0.233  Sum_probs=41.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         5 ~~i~~~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   54 (253)
T PRK14261          5 IILSTKNL--------NLWYGEKHALYDITISIPKN-------RVTALIGPSGCGKSTLLRCFNR   54 (253)
T ss_pred             ceEEEeee--------EEEECCeeeeeeeEEEECCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            45666654        33456778999999999999       9999999999999999999953

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=3.9e-08  Score=84.75  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=41.2

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        11 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   60 (258)
T PRK14268         11 PQIKVENL--------NLWYGEKQALKNVSMQIPKN-------SVTALIGPSGCGKSTFIRCLNR   60 (258)
T ss_pred             eeEEEeee--------EEEeCCeeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45666655        33346667899999999999       9999999999999999999953

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.65  E-value=3.4e-08  Score=80.55  Aligned_cols=38  Identities=32%  Similarity=0.564  Sum_probs=34.6

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~l~~i~~~i~~G-------~~~~i~G~nGsGKSTLl~~l~   47 (178)
T cd03229          10 YGQKTVLNDVSLNIEAG-------EIVALLGPSGSGKSTLLRCIA   47 (178)
T ss_pred             ECCeEEEeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45567899999999999       999999999999999999994

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.65  E-value=3.8e-08  Score=84.24  Aligned_cols=41  Identities=17%  Similarity=0.364  Sum_probs=36.1

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        11 ~~~~~~~~l~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14262         11 AYYGEKKAVKNVTMKIFKN-------QITAIIGPSGCGKTTLLRSINR   51 (250)
T ss_pred             EEeCCceeEeeeeEeecCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            3446667899999999999       9999999999999999999953

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=3.5e-08  Score=83.86  Aligned_cols=39  Identities=21%  Similarity=0.334  Sum_probs=35.4

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        14 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   52 (237)
T PRK11614         14 HYGKIQALHEVSLHINQG-------EIVTLIGANGAGKTTLLGTLC   52 (237)
T ss_pred             eeCCceeeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence            346667999999999999       999999999999999999994

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.64  E-value=3.4e-08  Score=83.51  Aligned_cols=38  Identities=26%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   47 (232)
T cd03218          10 YGKRKVVNGVSLSVKQG-------EIVGLLGPNGAGKTTTFYMIV   47 (232)
T ss_pred             eCCEEeeccceeEecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            46667899999999999       999999999999999999994

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=4.5e-08  Score=83.34  Aligned_cols=40  Identities=28%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        12 ~~~~~~~l~~~sl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   51 (241)
T PRK10895         12 AYKGRRVVEDVSLTVNSG-------EIVGLLGPNGAGKTTTFYMVVG   51 (241)
T ss_pred             EeCCEEEEeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            346667999999999999       9999999999999999999954

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.64  E-value=3.5e-08  Score=81.69  Aligned_cols=39  Identities=28%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus         9 ~~~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   47 (198)
T TIGR01189         9 SRGERMLFEGLSFTLNAG-------EALQVTGPNGIGKTTLLRILA   47 (198)
T ss_pred             EECCEEEEeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            346677899999999999       999999999999999999984

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.64  E-value=3.9e-08  Score=82.56  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        18 ~~~l~~isl~i~~G-------~~~~i~G~nGsGKSTLl~~i~G   53 (221)
T TIGR02211        18 TRVLKGVSLSIGKG-------EIVAIVGSSGSGKSTLLHLLGG   53 (221)
T ss_pred             eEeEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999       9999999999999999999943

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.64  E-value=3.4e-08  Score=83.71  Aligned_cols=38  Identities=24%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   47 (236)
T cd03219          10 FGGLVALDDVSFSVRPG-------EIHGLIGPNGAGKTTLFNLIS   47 (236)
T ss_pred             ECCEEEecCceEEecCC-------cEEEEECCCCCCHHHHHHHHc
Confidence            45667899999999999       999999999999999999994

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.64  E-value=5.2e-08  Score=83.38  Aligned_cols=41  Identities=24%  Similarity=0.337  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        11 ~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   51 (249)
T PRK14253         11 LFYGENQALKSINLPIPAR-------QVTALIGPSGCGKSTLLRCLNR   51 (249)
T ss_pred             EEECCeeeeecceEEecCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            3456667999999999999       9999999999999999999954

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.64  E-value=4.5e-08  Score=81.45  Aligned_cols=39  Identities=21%  Similarity=0.394  Sum_probs=35.3

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+.+++|++.+|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   48 (204)
T PRK13538         10 ERDERILFSGLSFTLNAG-------ELVQIEGPNGAGKTSLLRILA   48 (204)
T ss_pred             EECCEEEEecceEEECCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            346667899999999999       999999999999999999984

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.64  E-value=3.1e-08  Score=83.14  Aligned_cols=39  Identities=23%  Similarity=0.311  Sum_probs=34.9

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   48 (222)
T cd03224          10 YGKSQILFGVSLTVPEG-------EIVALLGRNGAGKTTLLKTIMG   48 (222)
T ss_pred             cCCeeEeeeeeEEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            45567899999999999       9999999999999999999943

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.63  E-value=4.3e-08  Score=81.28  Aligned_cols=40  Identities=20%  Similarity=0.340  Sum_probs=35.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+.+++|++++|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~il~~~s~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   49 (200)
T PRK13540         10 DYHDQPLLQQISFHLPAG-------GLLHLKGSNGAGKTTLLKLIAG   49 (200)
T ss_pred             EeCCeeEEeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            346667999999999999       9999999999999999999843

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.63  E-value=4.8e-08  Score=80.63  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        20 ~~~l~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   55 (192)
T cd03232          20 RQLLNNISGYVKPG-------TLTALMGESGAGKTTLLDVLAG   55 (192)
T ss_pred             eEeEEccEEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999       9999999999999999999963

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.63  E-value=3.3e-08  Score=83.36  Aligned_cols=40  Identities=28%  Similarity=0.435  Sum_probs=35.6

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++-+
T Consensus        10 ~~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~i~G~   49 (227)
T cd03260          10 YGDKHALKDISLDIPKG-------EITALIGPSGCGKSTLLRLLNRL   49 (227)
T ss_pred             cCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence            45667899999999999       99999999999999999999443

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.63  E-value=4.3e-08  Score=81.86  Aligned_cols=37  Identities=27%  Similarity=0.441  Sum_probs=33.7

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        14 ~~~il~~is~~i~~G-------~~~~l~G~nGsGKSTLl~~i~G   50 (214)
T TIGR02673        14 GVAALHDVSLHIRKG-------EFLFLTGPSGAGKTTLLKLLYG   50 (214)
T ss_pred             CceeecceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            456899999999999       9999999999999999999843

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.63  E-value=4.5e-08  Score=84.29  Aligned_cols=40  Identities=30%  Similarity=0.440  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        13 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~laG   52 (258)
T PRK14241         13 YYGSFHAVEDVNLNIEPR-------SVTAFIGPSGCGKSTVLRTLNR   52 (258)
T ss_pred             EECCEeeeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            356667899999999999       9999999999999999999954

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.63  E-value=4.2e-08  Score=82.15  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        17 ~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   51 (216)
T TIGR00960        17 PALDNLNFHITKG-------EMVFLVGHSGAGKSTFLKLILG   51 (216)
T ss_pred             eEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999       9999999999999999999943

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.63  E-value=3.7e-08  Score=83.82  Aligned_cols=37  Identities=22%  Similarity=0.452  Sum_probs=34.0

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +...+.+++|++.+|       ++++|+||||+|||||||+++.
T Consensus        14 ~~~il~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   50 (243)
T TIGR02315        14 GKQALKNINLNINPG-------EFVAIIGPSGAGKSTLLRCINR   50 (243)
T ss_pred             CcceeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            557899999999999       9999999999999999999943

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.63  E-value=3.9e-08  Score=79.76  Aligned_cols=39  Identities=28%  Similarity=0.368  Sum_probs=34.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~l~~~~~~i~~G-------e~~~i~G~nGsGKStLl~~l~G   48 (173)
T cd03230          10 YGKKTALDDISLTVEKG-------EIYGLLGPNGAGKTTLIKIILG   48 (173)
T ss_pred             ECCeeeeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            35556899999999999       9999999999999999999944

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.63  E-value=5e-08  Score=83.59  Aligned_cols=41  Identities=29%  Similarity=0.314  Sum_probs=36.4

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .++....+++++|++.+|       ++++|+||||+|||||||+++-+
T Consensus        13 ~~~~~~~l~~~sl~i~~G-------e~~~i~G~nGsGKSTLl~~l~Gl   53 (251)
T PRK14251         13 SYGNYEALHGISLDFEEK-------ELTALIGPSGCGKSTFLRCLNRM   53 (251)
T ss_pred             EECCeeeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhhc
Confidence            456677999999999999       99999999999999999999543

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=5.5e-08  Score=84.19  Aligned_cols=49  Identities=27%  Similarity=0.346  Sum_probs=41.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        10 ~~l~i~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   58 (265)
T PRK10575         10 TTFALRNV--------SFRVPGRTLLHPLSLTFPAG-------KVTGLIGHNGSGKSTLLKMLG   58 (265)
T ss_pred             ceEEEeeE--------EEEECCEEEEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            45666665        33456778999999999999       999999999999999999984

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.63  E-value=4.1e-08  Score=87.81  Aligned_cols=42  Identities=29%  Similarity=0.445  Sum_probs=36.5

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.+++...+++++++++.|       +.++|.|||||||||+||+|+.
T Consensus        10 ~K~yg~~~~l~~i~l~i~~G-------ef~vllGPSGcGKSTlLr~IAG   51 (338)
T COG3839          10 RKSFGSFEVLKDVNLDIEDG-------EFVVLLGPSGCGKSTLLRMIAG   51 (338)
T ss_pred             EEEcCCceeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            45566544999999999999       9999999999999999999954

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.62  E-value=5.5e-08  Score=84.37  Aligned_cols=50  Identities=24%  Similarity=0.277  Sum_probs=41.8

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        18 ~~l~~~nl--------~~~~~~~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   67 (267)
T PRK14235         18 IKMRARDV--------SVFYGEKQALFDVDLDIPEK-------TVTAFIGPSGCGKSTFLRCLNR   67 (267)
T ss_pred             ceEEEEeE--------EEEECCEEEEEEEEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            45666665        33456677999999999999       9999999999999999999954

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.62  E-value=5.7e-08  Score=83.18  Aligned_cols=50  Identities=18%  Similarity=0.355  Sum_probs=41.1

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+.+++|++++|       ++++|+||||+|||||||+++.
T Consensus         6 ~~l~~~~l--------~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   55 (252)
T CHL00131          6 PILEIKNL--------HASVNENEILKGLNLSINKG-------EIHAIMGPNGSGKSTLSKVIAG   55 (252)
T ss_pred             ceEEEEeE--------EEEeCCEEeeecceeEEcCC-------cEEEEECCCCCCHHHHHHHHcC
Confidence            45666655        33346667999999999999       9999999999999999999854

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.62  E-value=6.3e-08  Score=84.93  Aligned_cols=52  Identities=25%  Similarity=0.344  Sum_probs=42.6

Q ss_pred             CCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        150 PHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       150 ~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.+++.++        ...++....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        36 ~~~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~L~G   87 (286)
T PRK14275         36 GKPHVVAKNF--------SIYYGEFEAVKKVNADILSK-------YVTAIIGPSGCGKSTFLRAINR   87 (286)
T ss_pred             CceEEEEeee--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            3466777665        33345567899999999999       9999999999999999999954

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.62  E-value=5e-08  Score=83.03  Aligned_cols=40  Identities=25%  Similarity=0.483  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~il~~~s~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   49 (240)
T PRK09493         10 HFGPTQVLHNIDLNIDQG-------EVVVIIGPSGSGKSTLLRCINK   49 (240)
T ss_pred             EECCeEEeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            346667899999999999       9999999999999999999943

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.61  E-value=3.6e-08  Score=81.93  Aligned_cols=39  Identities=26%  Similarity=0.408  Sum_probs=34.7

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++ ...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~~l~~v~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   48 (205)
T cd03226           9 YKKGTEILDDLSLDLYAG-------EIIALTGKNGAGKTTLAKILAG   48 (205)
T ss_pred             eCCcCceeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            454 56899999999999       9999999999999999999943

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.61  E-value=5.5e-08  Score=83.78  Aligned_cols=49  Identities=20%  Similarity=0.202  Sum_probs=40.4

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++.++        ...+++...+++++|++++|       ++++|.||||+|||||||+++-
T Consensus         6 ~l~~~~l--------~~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   54 (258)
T PRK11701          6 LLSVRGL--------TKLYGPRKGCRDVSFDLYPG-------EVLGIVGESGSGKTTLLNALSA   54 (258)
T ss_pred             eEEEeee--------EEEcCCceeeeeeeEEEeCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            4566554        33346667899999999999       9999999999999999999953

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=6.8e-08  Score=82.71  Aligned_cols=41  Identities=32%  Similarity=0.494  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        12 ~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   52 (252)
T PRK14272         12 IYYGDKQAVKNVNLDVQRG-------TVNALIGPSGCGKTTFLRAINR   52 (252)
T ss_pred             EEECCEEeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            3456678999999999999       9999999999999999999954

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.61  E-value=6.7e-08  Score=82.89  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        13 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   52 (252)
T PRK14256         13 HFGKNHAVKDVSMDFPEN-------SVTAIIGPSGCGKSTVLRSINR   52 (252)
T ss_pred             EeCCeeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            345667999999999999       9999999999999999999954

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.61  E-value=4.5e-08  Score=81.78  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=34.7

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus         9 ~~~~~~l~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   46 (213)
T cd03235           9 YGGHPVLEDVSFEVKPG-------EFLAIVGPNGAGKSTLLKAIL   46 (213)
T ss_pred             ECCEEeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            45567899999999999       999999999999999999984

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.60  E-value=6.5e-08  Score=84.85  Aligned_cols=51  Identities=22%  Similarity=0.344  Sum_probs=42.3

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++.+++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        37 ~~~l~i~~l--------~~~~~~~~il~~is~~i~~G-------e~~~I~G~nGsGKSTLl~~l~G   87 (285)
T PRK14254         37 ETVIEARDL--------NVFYGDEQALDDVSMDIPEN-------QVTAMIGPSGCGKSTFLRCINR   87 (285)
T ss_pred             CceEEEEEE--------EEEECCEeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            456666655        33456678999999999999       9999999999999999999953

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.60  E-value=4e-08  Score=79.71  Aligned_cols=39  Identities=23%  Similarity=0.480  Sum_probs=35.7

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ....+++++||.+++|       +.++||||.|||||||||+++.+
T Consensus        14 ~~a~il~~isl~v~~G-------e~iaitGPSG~GKStllk~va~L   52 (223)
T COG4619          14 GDAKILNNISLSVRAG-------EFIAITGPSGCGKSTLLKIVASL   52 (223)
T ss_pred             CCCeeecceeeeecCC-------ceEEEeCCCCccHHHHHHHHHhc
Confidence            4557899999999999       99999999999999999999765

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.60  E-value=4.5e-08  Score=81.59  Aligned_cols=36  Identities=31%  Similarity=0.515  Sum_probs=33.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        14 ~~il~~vs~~i~~G-------~~~~l~G~nGsGKSTLl~~l~G   49 (211)
T cd03225          14 RPALDDISLTIKKG-------EFVLIVGPNGSGKSTLLRLLNG   49 (211)
T ss_pred             eeeecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            56899999999999       9999999999999999999943

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.60  E-value=4.8e-08  Score=82.98  Aligned_cols=39  Identities=31%  Similarity=0.503  Sum_probs=34.8

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++ ...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   49 (241)
T cd03256          10 YPNGKKALKDVSLSINPG-------EFVALIGPSGAGKSTLLRCLNG   49 (241)
T ss_pred             cCCccEEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            444 57899999999999       9999999999999999999943

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.60  E-value=5.6e-08  Score=84.76  Aligned_cols=39  Identities=28%  Similarity=0.394  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~la   48 (272)
T PRK13547         10 ARRHRAILRDLSLRIEPG-------RVTALLGRNGAGKSTLLKALA   48 (272)
T ss_pred             EECCEeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            356677999999999999       999999999999999999994

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.60  E-value=4.7e-08  Score=81.59  Aligned_cols=39  Identities=26%  Similarity=0.514  Sum_probs=34.6

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++ ...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~~l~~~sl~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   49 (214)
T cd03292          10 YPNGTAALDGINISISAG-------EFVFLVGPSGAGKSTLLKLIYK   49 (214)
T ss_pred             eCCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            443 46899999999999       9999999999999999999953

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.60  E-value=6e-08  Score=81.57  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=34.3

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        13 ~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (222)
T PRK10908         13 GGRQALQGVTFHMRPG-------EMAFLTGHSGAGKSTLLKLICG   50 (222)
T ss_pred             CCCeEEeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            4457899999999999       9999999999999999999943

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.60  E-value=6.3e-08  Score=83.56  Aligned_cols=41  Identities=29%  Similarity=0.464  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   50 (258)
T PRK13548         10 VRLGGRTLLDDVSLTLRPG-------EVVAILGPNGAGKSTLLRALSG   50 (258)
T ss_pred             EEeCCeeeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            3456667899999999999       9999999999999999999943

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.60  E-value=4.8e-08  Score=81.84  Aligned_cols=40  Identities=30%  Similarity=0.524  Sum_probs=35.7

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+.....+++++++..+|       ++++|.||||+|||||||.+.
T Consensus         9 ~~~~Gr~ll~~vsl~~~pG-------ev~ailGPNGAGKSTlLk~Ls   48 (259)
T COG4559           9 YSLAGRRLLDGVSLDLRPG-------EVLAILGPNGAGKSTLLKALS   48 (259)
T ss_pred             EEeecceeccCcceeccCC-------cEEEEECCCCccHHHHHHHhh
Confidence            3456678899999999999       999999999999999999873

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=6.8e-08  Score=82.30  Aligned_cols=40  Identities=30%  Similarity=0.477  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        11 ~~~~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (242)
T PRK11124         11 FYGAHQALFDITLDCPQG-------ETLVLLGPSGAGKSSLLRVLNL   50 (242)
T ss_pred             EECCeeeEeeeeeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            346667999999999999       9999999999999999999953

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.59  E-value=5.1e-08  Score=83.65  Aligned_cols=40  Identities=33%  Similarity=0.369  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   48 (252)
T TIGR03005         9 RFGILTVLDGLNFSVAAG-------EKVALIGPSGSGKSTILRILMT   48 (252)
T ss_pred             EeCCeeEEeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            345667899999999999       9999999999999999999943

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.59  E-value=5.5e-08  Score=76.88  Aligned_cols=38  Identities=21%  Similarity=0.332  Sum_probs=34.3

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+.+++|++++|       ++++|+||||+|||||+++++
T Consensus        10 ~~~~~~l~~~~~~~~~G-------e~~~i~G~nGsGKStLl~~l~   47 (144)
T cd03221          10 YGGKLLLKDISLTINPG-------DRIGLVGRNGAGKSTLLKLIA   47 (144)
T ss_pred             ECCceEEEeeEEEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            45557899999999999       999999999999999999983

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.59  E-value=7e-08  Score=85.12  Aligned_cols=41  Identities=29%  Similarity=0.468  Sum_probs=37.5

Q ss_pred             ceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++ ....+++++|++++|       ++++|.||||+|||||||+++
T Consensus        11 ~k~~~~~~~~l~~vs~~i~~G-------ei~gllG~NGAGKTTllk~l~   52 (293)
T COG1131          11 TKKYGGDKTALDGVSFEVEPG-------EIFGLLGPNGAGKTTLLKILA   52 (293)
T ss_pred             EEEeCCCCEEEeceeEEEcCC-------eEEEEECCCCCCHHHHHHHHh
Confidence            45677 589999999999999       999999999999999999984

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.59  E-value=7.4e-08  Score=83.62  Aligned_cols=37  Identities=32%  Similarity=0.359  Sum_probs=33.8

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        24 ~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   60 (268)
T PRK10419         24 HQTVLNNVSLSLKSG-------ETVALLGRSGCGKSTLARLLVG   60 (268)
T ss_pred             ceeeEeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999       9999999999999999999853

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.59  E-value=7.1e-08  Score=82.51  Aligned_cols=39  Identities=28%  Similarity=0.452  Sum_probs=35.0

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++....+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   48 (247)
T TIGR00972        10 FYGEKEALKNINLDIPKN-------QVTALIGPSGCGKSTLLRSLN   48 (247)
T ss_pred             EECCeeeecceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            345567899999999999       999999999999999999984

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=7.1e-08  Score=82.34  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=35.2

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        13 ~~~~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   51 (241)
T PRK14250         13 SFGKEILKDISVKFEGG-------AIYTIVGPSGAGKSTLIKLINR   51 (241)
T ss_pred             eCCeeeeeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            46667899999999999       9999999999999999999943

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=8.4e-08  Score=82.25  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+.+++|++.+|       ++++|+||||+|||||||+++-
T Consensus        13 ~~~~~~il~~~s~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   52 (251)
T PRK14249         13 FYHKHQVLKNINMDFPER-------QITAIIGPSGCGKSTLLRALNR   52 (251)
T ss_pred             EECCeeEecceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            345667899999999999       9999999999999999999943

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.58  E-value=6.1e-08  Score=82.77  Aligned_cols=41  Identities=27%  Similarity=0.382  Sum_probs=36.0

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++.+
T Consensus        10 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~Gl   50 (248)
T PRK09580         10 SVEDKAILRGLNLEVRPG-------EVHAIMGPNGSGKSTLSATLAGR   50 (248)
T ss_pred             EeCCeeeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHcCC
Confidence            345667899999999999       99999999999999999999443

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=8.7e-08  Score=84.83  Aligned_cols=50  Identities=26%  Similarity=0.351  Sum_probs=41.6

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+.+.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        44 ~~l~i~nl--------~~~~~~~~iL~~is~~i~~G-------e~~~IvG~nGsGKSTLl~~L~G   93 (305)
T PRK14264         44 AKLSVEDL--------DVYYGDDHALKGVSMDIPEK-------SVTALIGPSGCGKSTFLRCLNR   93 (305)
T ss_pred             ceEEEEEE--------EEEeCCeeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45666665        33456677999999999999       9999999999999999999953

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.58  E-value=6.7e-08  Score=88.76  Aligned_cols=41  Identities=29%  Similarity=0.513  Sum_probs=36.9

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 s~~y~~~~vL~~vs~~i~~G-------eiv~liGpNGaGKSTLLk~La   50 (402)
T PRK09536         10 SVEFGDTTVLDGVDLSVREG-------SLVGLVGPNGAGKTTLLRAIN   50 (402)
T ss_pred             EEEECCEEEEEeeEEEECCC-------CEEEEECCCCchHHHHHHHHh
Confidence            33457778999999999999       999999999999999999994

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=7.5e-08  Score=82.37  Aligned_cols=41  Identities=20%  Similarity=0.262  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++....+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (246)
T PRK14269         10 LFYGKKQALFDINMQIEQN-------KITALIGASGCGKSTFLRCFNR   50 (246)
T ss_pred             EEECCEeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            3456667899999999999       9999999999999999999954

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.58  E-value=8.4e-08  Score=82.99  Aligned_cols=50  Identities=22%  Similarity=0.191  Sum_probs=41.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+.+++|++++|       ++++|+||||+|||||||+++.
T Consensus        15 ~~l~~~~l--------~~~~~~~~vl~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   64 (265)
T PRK14252         15 QKSEVNKL--------NFYYGGYQALKNINMMVHEK-------QVTALIGPSGCGKSTFLRCFNR   64 (265)
T ss_pred             ceEEEEEE--------EEEECCeeeeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            34666655        33456678999999999999       9999999999999999999943

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=8.2e-08  Score=82.54  Aligned_cols=40  Identities=23%  Similarity=0.352  Sum_probs=36.0

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        11 ~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   50 (255)
T PRK11231         11 GYGTKRILNDLSLSLPTG-------KITALIGPNGCGKSTLLKCFAR   50 (255)
T ss_pred             EECCEEEEeeeeeEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            356678999999999999       9999999999999999999943

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=5.2e-08  Score=84.62  Aligned_cols=39  Identities=28%  Similarity=0.253  Sum_probs=35.0

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        11 ~~~~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   49 (271)
T PRK13638         11 YQDEPVLKGLNLDFSLS-------PVTGLVGANGCGKSTLFMNLSG   49 (271)
T ss_pred             cCCcccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHcC
Confidence            45567899999999999       9999999999999999999843

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.57  E-value=6.9e-08  Score=80.18  Aligned_cols=39  Identities=28%  Similarity=0.417  Sum_probs=35.2

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+|+||+|||||||.++
T Consensus         9 ~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   47 (201)
T cd03231           9 ERDGRALFSGLSFTLAAG-------EALQVTGPNGSGKTTLLRILA   47 (201)
T ss_pred             EeCCceeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            346667899999999999       999999999999999999984

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.57  E-value=8e-08  Score=83.17  Aligned_cols=41  Identities=29%  Similarity=0.369  Sum_probs=36.7

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        14 ~~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~i~   54 (265)
T PRK10253         14 TLGYGKYTVAENLTVEIPDG-------HFTAIIGPNGCGKSTLLRTLS   54 (265)
T ss_pred             EEEECCEEEeeecceEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            34557778999999999999       999999999999999999984

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.57  E-value=6.7e-08  Score=83.44  Aligned_cols=50  Identities=18%  Similarity=0.355  Sum_probs=42.3

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|.+.+.++        ...+++...+.+++|++.+|       ++++|+||||+|||||||+++
T Consensus         8 ~~~i~~~~~--------~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~ia   57 (257)
T PRK14246          8 EDVFNISRL--------YLYINDKAILKDITIKIPNN-------SIFGIMGPSGSGKSTLLKVLN   57 (257)
T ss_pred             hhheeeeeE--------EEecCCceeEeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            356666654        44467778999999999999       999999999999999999995

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.57  E-value=8.2e-08  Score=86.36  Aligned_cols=50  Identities=22%  Similarity=0.359  Sum_probs=43.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++++++        .+.+++...++++++++++|       +.+.|.||+||||||+||+||-
T Consensus         4 ~~l~i~~v--------~k~yg~~~av~~isl~i~~G-------ef~~lLGPSGcGKTTlLR~IAG   53 (352)
T COG3842           4 PALEIRNV--------SKSFGDFTAVDDISLDIKKG-------EFVTLLGPSGCGKTTLLRMIAG   53 (352)
T ss_pred             ceEEEEee--------eeecCCeeEEecceeeecCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            56777765        55677889999999999999       9999999999999999999964

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.57  E-value=5.2e-08  Score=80.08  Aligned_cols=37  Identities=32%  Similarity=0.523  Sum_probs=33.7

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++.+.+++|++.+|       +.+.|+||||+|||||||+++
T Consensus        13 ~e~~lf~~L~f~l~~G-------e~~~i~G~NG~GKTtLLRila   49 (209)
T COG4133          13 GERTLFSDLSFTLNAG-------EALQITGPNGAGKTTLLRILA   49 (209)
T ss_pred             CcceeecceeEEEcCC-------CEEEEECCCCCcHHHHHHHHH
Confidence            4457889999999999       999999999999999999994

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.57  E-value=8.9e-08  Score=82.43  Aligned_cols=42  Identities=21%  Similarity=0.357  Sum_probs=37.0

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        12 ~~~~~~~~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   53 (257)
T PRK10619         12 HKRYGEHEVLKGVSLQANAG-------DVISIIGSSGSGKSTFLRCINF   53 (257)
T ss_pred             EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            33456778999999999999       9999999999999999999854

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.57  E-value=7.7e-08  Score=83.67  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++++++        ...+++...+++++|++++|       ++++|+|+||+|||||||+++-
T Consensus        23 ~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~I~G~nGsGKSTLl~~i~G   72 (271)
T PRK14238         23 VVFDTQNL--------NLWYGEDHALKNINLDIHEN-------EVTAIIGPSGCGKSTYIKTLNR   72 (271)
T ss_pred             eEEEEeee--------EEEECCcceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            46777765        33456667899999999999       9999999999999999999954

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.57  E-value=5.9e-08  Score=78.60  Aligned_cols=35  Identities=26%  Similarity=0.427  Sum_probs=32.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        16 ~~l~~i~~~i~~G-------~~~~l~G~nGsGKstLl~~i~G   50 (171)
T cd03228          16 PVLKDVSLTIKPG-------EKVAIVGPSGSGKSTLLKLLLR   50 (171)
T ss_pred             ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence            6889999999999       9999999999999999999943

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.57  E-value=7.2e-08  Score=82.02  Aligned_cols=50  Identities=24%  Similarity=0.370  Sum_probs=44.7

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++|+++++        ...+++..++++++|+|++|       ++++|.||+|+||||+||+|+
T Consensus         6 ~~~I~vr~v--------~~~fG~~~Ild~v~l~V~~G-------ei~~iiGgSGsGKStlLr~I~   55 (263)
T COG1127           6 EPLIEVRGV--------TKSFGDRVILDGVDLDVPRG-------EILAILGGSGSGKSTLLRLIL   55 (263)
T ss_pred             cceEEEeee--------eeecCCEEEecCceeeecCC-------cEEEEECCCCcCHHHHHHHHh
Confidence            467888776        45568999999999999999       999999999999999999983

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.57  E-value=8.3e-08  Score=79.38  Aligned_cols=36  Identities=22%  Similarity=0.416  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        22 ~~~l~~~~~~i~~G-------e~~~l~G~nGsGKStLl~~i~G   57 (194)
T cd03213          22 KQLLKNVSGKAKPG-------ELTAIMGPSGAGKSTLLNALAG   57 (194)
T ss_pred             ccceecceEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999       9999999999999999999943

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.56  E-value=8.3e-08  Score=82.17  Aligned_cols=40  Identities=30%  Similarity=0.449  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+.+++|++++|       ++++|+||||+|||||||+++-
T Consensus        12 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   51 (250)
T PRK14240         12 FYGDFQALKKINLDIEEN-------QVTALIGPSGCGKSTFLRTLNR   51 (250)
T ss_pred             EECCceeeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            345567899999999999       9999999999999999999954

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1e-07  Score=82.19  Aligned_cols=41  Identities=29%  Similarity=0.377  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++.+|       ++++|+|+||+|||||||+++-
T Consensus        15 ~~~~~~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLlk~l~G   55 (259)
T PRK14260         15 FYYNTSKAIEGISMDIYRN-------KVTAIIGPSGCGKSTFIKTLNR   55 (259)
T ss_pred             EEECCeEeecceEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            3456667899999999999       9999999999999999999954

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.56  E-value=6.3e-08  Score=80.44  Aligned_cols=35  Identities=23%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        19 ~il~~~s~~i~~G-------~~~~i~G~nG~GKSTLl~~i~G   53 (204)
T cd03250          19 FTLKDINLEVPKG-------ELVAIVGPVGSGKSSLLSALLG   53 (204)
T ss_pred             ceeeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            5899999999999       9999999999999999999844

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.56  E-value=5.8e-08  Score=79.07  Aligned_cols=35  Identities=26%  Similarity=0.356  Sum_probs=32.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        16 ~~l~~i~~~i~~G-------e~~~i~G~nGsGKStLl~~l~G   50 (178)
T cd03247          16 QVLKNLSLELKQG-------EKIALLGRSGSGKSTLLQLLTG   50 (178)
T ss_pred             cceEEEEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999       9999999999999999999943

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.56  E-value=8.8e-08  Score=84.59  Aligned_cols=41  Identities=22%  Similarity=0.348  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~~~l~~is~~i~~G-------ei~~l~G~NGaGKTTLl~~l~G   50 (301)
T TIGR03522        10 KLYGTQNALDEVSFEAQKG-------RIVGFLGPNGAGKSTTMKIITG   50 (301)
T ss_pred             EEECCEEEEEEeEEEEeCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            3456778999999999999       9999999999999999999943

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.56  E-value=1e-07  Score=82.37  Aligned_cols=40  Identities=23%  Similarity=0.383  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        16 ~~~~~~il~~is~~i~~G-------e~~~I~G~nGsGKSTLl~~l~G   55 (261)
T PRK14258         16 YYDTQKILEGVSMEIYQS-------KVTAIIGPSGCGKSTFLKCLNR   55 (261)
T ss_pred             EeCCeeEeeceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            345567899999999999       9999999999999999999943

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.55  E-value=7.8e-08  Score=81.89  Aligned_cols=40  Identities=25%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++..++.+++|++.+|       ++++|+||||+|||||||+++-
T Consensus         9 ~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   48 (237)
T TIGR00968         9 RFGSFQALDDVNLEVPTG-------SLVALLGPSGSGKSTLLRIIAG   48 (237)
T ss_pred             EECCeeeeeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            346667999999999999       9999999999999999999953

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.55  E-value=8.7e-08  Score=79.58  Aligned_cols=40  Identities=25%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++.+
T Consensus        10 ~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          10 VGGKEILKGVNLTIKKG-------EVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             eCCEEeeeccceEECCC-------cEEEEECCCCCCHHHHHHHHhCC
Confidence            45567899999999999       99999999999999999999543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.55  E-value=8.3e-08  Score=82.55  Aligned_cols=39  Identities=28%  Similarity=0.403  Sum_probs=35.5

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~il~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~i~   48 (256)
T TIGR03873        10 SAGGRLIVDGVDVTAPPG-------SLTGLLGPNGSGKSTLLRLLA   48 (256)
T ss_pred             EECCEEEEeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence            346677999999999999       999999999999999999994

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.55  E-value=7.7e-08  Score=82.02  Aligned_cols=39  Identities=23%  Similarity=0.456  Sum_probs=34.7

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++ ...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        10 ~~~~~~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   49 (242)
T cd03295          10 YGGGKKAVNNLNLEIAKG-------EFLVLIGPSGSGKTTTMKMINR   49 (242)
T ss_pred             eCCcceEeeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            455 56899999999999       9999999999999999999943

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=1.1e-07  Score=85.99  Aligned_cols=51  Identities=25%  Similarity=0.380  Sum_probs=42.3

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+|+-
T Consensus         4 ~~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~llGpsGsGKSTLLr~IaG   54 (351)
T PRK11432          4 KNFVVLKNI--------TKRFGSNTVIDNLNLTIKQG-------TMVTLLGPSGCGKTTVLRLVAG   54 (351)
T ss_pred             CcEEEEEeE--------EEEECCeEEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHHC
Confidence            456777665        34456667899999999999       9999999999999999999953

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.55  E-value=8.8e-08  Score=77.36  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        14 ~~~l~~i~l~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   49 (166)
T cd03223          14 RVLLKDLSFEIKPG-------DRLLITGPSGTGKSSLFRALAG   49 (166)
T ss_pred             CeeeecCeEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999       9999999999999999999843

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.55  E-value=9.2e-08  Score=80.52  Aligned_cols=40  Identities=28%  Similarity=0.342  Sum_probs=35.5

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++....+++++|++++|       ++++|+||||+||||||++++.
T Consensus         9 ~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   48 (223)
T TIGR03740         9 RFGKQTAVNNISLTVPKN-------SVYGLLGPNGAGKSTLLKMITG   48 (223)
T ss_pred             EECCEEEEeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            345567899999999999       9999999999999999999943

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.54  E-value=1.3e-07  Score=80.74  Aligned_cols=42  Identities=26%  Similarity=0.367  Sum_probs=37.8

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++....++++++++..|       +++.|.||+|||||||||.|+-
T Consensus        10 ~~~f~~~~vl~~i~L~v~~G-------EfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          10 SKSFGGVEVLEDINLSVEKG-------EFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             EEEeCceEEeccceeEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            45567788999999999999       9999999999999999999953

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.54  E-value=1.2e-07  Score=77.44  Aligned_cols=34  Identities=15%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        15 ~l~~vs~~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   48 (182)
T cd03215          15 AVRDVSFEVRAG-------EIVGIAGLVGNGQTELAEALFG   48 (182)
T ss_pred             eecceEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            889999999999       9999999999999999999943

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.3e-07  Score=81.88  Aligned_cols=41  Identities=24%  Similarity=0.378  Sum_probs=37.3

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        15 ~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   55 (261)
T PRK14263         15 KIFYGNFMAVRDSHVPIRKN-------EITGFIGPSGCGKSTVLRSLN   55 (261)
T ss_pred             EEEeCCEEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            45667778999999999999       999999999999999999984

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.4e-07  Score=82.07  Aligned_cols=50  Identities=16%  Similarity=0.219  Sum_probs=41.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        24 ~~l~~~nl--------~~~~~~~~il~~vs~~i~~G-------e~~~I~G~nGsGKSTLl~~laG   73 (272)
T PRK14236         24 TALEVRNL--------NLFYGDKQALFDISMRIPKN-------RVTAFIGPSGCGKSTLLRCFNR   73 (272)
T ss_pred             cEEEEEEE--------EEEECCeeEeeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            45666665        33446667899999999999       9999999999999999999943

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.54  E-value=9.8e-08  Score=77.94  Aligned_cols=38  Identities=32%  Similarity=0.530  Sum_probs=34.6

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+.+++|++.+|       ++++|+||||+|||||||+++
T Consensus         9 ~~~~~~l~~~~~~i~~G-------~~~~l~G~nGsGKStLl~~i~   46 (180)
T cd03214           9 YGGRTVLDDLSLSIEAG-------EIVGILGPNGAGKSTLLKTLA   46 (180)
T ss_pred             ECCeeeEeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45567899999999999       999999999999999999984

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.54  E-value=5.5e-08  Score=75.31  Aligned_cols=32  Identities=28%  Similarity=0.633  Sum_probs=29.0

Q ss_pred             ecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        177 IGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       177 l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      |++++|++++|       ++++|+|+||+|||||||+++
T Consensus         1 L~~v~~~i~~g-------~~~~i~G~nGsGKStLl~~l~   32 (137)
T PF00005_consen    1 LKNVSLEIKPG-------EIVAIVGPNGSGKSTLLKALA   32 (137)
T ss_dssp             EEEEEEEEETT-------SEEEEEESTTSSHHHHHHHHT
T ss_pred             CCceEEEEcCC-------CEEEEEccCCCccccceeeec
Confidence            46788999999       999999999999999999883

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.53  E-value=1.2e-07  Score=79.90  Aligned_cols=36  Identities=31%  Similarity=0.479  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        21 ~~il~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   56 (224)
T TIGR02324        21 LPVLKNVSLTVNAG-------ECVALSGPSGAGKSTLLKSLYA   56 (224)
T ss_pred             eEEEecceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            36899999999999       9999999999999999999843

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.53  E-value=1.1e-07  Score=82.36  Aligned_cols=35  Identities=26%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.+++|++++|       ++++|+||||+|||||||+++.
T Consensus        27 ~~l~~vsl~i~~G-------e~~~i~G~NGsGKSTLl~~l~G   61 (267)
T PRK15112         27 EAVKPLSFTLREG-------QTLAIIGENGSGKSTLAKMLAG   61 (267)
T ss_pred             ceeeeeeEEecCC-------CEEEEEcCCCCCHHHHHHHHhC
Confidence            5899999999999       9999999999999999999953

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.53  E-value=9e-08  Score=80.78  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        21 ~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLlk~l~G   55 (226)
T cd03234          21 RILNDVSLHVESG-------QVMAILGSSGSGKTTLLDAISG   55 (226)
T ss_pred             ccccCceEEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            6899999999999       9999999999999999999953

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.53  E-value=9.8e-08  Score=82.82  Aligned_cols=50  Identities=16%  Similarity=0.114  Sum_probs=39.6

Q ss_pred             ceEEeccccCcccCCCceeeCCe--eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNS--TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~--~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++.  ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus         6 ~~l~i~~l--------~~~~~~~~~~~l~~isl~i~~G-------e~~~I~G~nGsGKSTLl~~i~G   57 (269)
T PRK13648          6 SIIVFKNV--------SFQYQSDASFTLKDVSFNIPKG-------QWTSIVGHNGSGKSTIAKLMIG   57 (269)
T ss_pred             ceEEEEEE--------EEEcCCCCCcceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45666655        2334442  4789999999999       9999999999999999999943

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.53  E-value=1.1e-07  Score=80.55  Aligned_cols=40  Identities=23%  Similarity=0.409  Sum_probs=35.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus         9 ~~~~~~il~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~g   48 (232)
T cd03300           9 FYGGFVALDGVSLDIKEG-------EFFTLLGPSGCGKTTLLRLIAG   48 (232)
T ss_pred             EeCCeeeeccceEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            345667999999999999       9999999999999999999953

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.52  E-value=1.1e-07  Score=90.56  Aligned_cols=50  Identities=18%  Similarity=0.212  Sum_probs=41.9

Q ss_pred             ceEEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...++ +...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         5 ~~l~i~~l--------~~~y~~~~~il~~vs~~i~~G-------e~~~iiG~NGsGKSTLlk~i~G   55 (556)
T PRK11819          5 YIYTMNRV--------SKVVPPKKQILKDISLSFFPG-------AKIGVLGLNGAGKSTLLRIMAG   55 (556)
T ss_pred             EEEEEeeE--------EEEeCCCCeeeeCceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            46667665        34456 568999999999999       9999999999999999999943

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.52  E-value=1.4e-07  Score=80.70  Aligned_cols=40  Identities=30%  Similarity=0.512  Sum_probs=35.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+.+++|++.+|       ++++|+||||+|||||||+++-
T Consensus        12 ~~~~~~~l~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   51 (250)
T PRK14266         12 YFDDAHILKNVNLDIPKN-------SVTALIGPSGCGKSTFIRTLNR   51 (250)
T ss_pred             EeCCeEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            345667999999999999       9999999999999999999954

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.51  E-value=1.3e-07  Score=78.77  Aligned_cols=37  Identities=22%  Similarity=0.338  Sum_probs=33.7

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +...+.+++|++++|       ++++|+||||+|||||||+++-
T Consensus        19 ~~~il~~~s~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   55 (202)
T cd03233          19 KIPILKDFSGVVKPG-------EMVLVLGRPGSGCSTLLKALAN   55 (202)
T ss_pred             CceeeeeEEEEECCC-------cEEEEECCCCCCHHHHHHHhcc
Confidence            457899999999999       9999999999999999999843

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.4e-07  Score=85.71  Aligned_cols=41  Identities=22%  Similarity=0.371  Sum_probs=36.3

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        11 ~~~~~~~vl~~vsl~i~~G-------e~~~l~G~nGsGKSTLL~~iaG   51 (369)
T PRK11000         11 KAYGDVVISKDINLDIHEG-------EFVVFVGPSGCGKSTLLRMIAG   51 (369)
T ss_pred             EEeCCeEEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            3456667899999999999       9999999999999999999953

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=1.3e-07  Score=82.36  Aligned_cols=39  Identities=26%  Similarity=0.368  Sum_probs=34.6

Q ss_pred             eeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++ ....+++++|++++|       ++++|+||||+|||||||+++
T Consensus        13 ~~~~~~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   52 (274)
T PRK13647         13 RYKDGTKALKGLSLSIPEG-------SKTALLGPNGAGKSTLLLHLN   52 (274)
T ss_pred             EeCCCCeeeeeEEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            344 346899999999999       999999999999999999994

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.51  E-value=1.4e-07  Score=82.10  Aligned_cols=39  Identities=28%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             eeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++ +...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        15 ~~~~~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   54 (272)
T PRK15056         15 TWRNGHTALRDASFTVPGG-------SIAALVGVNGSGKSTLFKALM   54 (272)
T ss_pred             EecCCcEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            344 457899999999999       999999999999999999994

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.51  E-value=1.2e-07  Score=80.03  Aligned_cols=35  Identities=23%  Similarity=0.407  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        17 ~~l~~isl~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   51 (229)
T cd03254          17 PVLKDINFSIKPG-------ETVAIVGPTGAGKTTLINLLMR   51 (229)
T ss_pred             ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999       9999999999999999999943

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.51  E-value=1.4e-07  Score=79.55  Aligned_cols=35  Identities=34%  Similarity=0.414  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        28 ~~l~~is~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   62 (226)
T cd03248          28 LVLQDVSFTLHPG-------EVTALVGPSGSGKSTVVALLEN   62 (226)
T ss_pred             ccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999       9999999999999999999953

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.51  E-value=1.5e-07  Score=88.22  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus       268 ~~~~~~~il~~vsl~i~~G-------e~~~i~G~NGsGKSTLl~~l~G  308 (490)
T PRK10938        268 VSYNDRPILHNLSWQVNPG-------EHWQIVGPNGAGKSTLLSLITG  308 (490)
T ss_pred             EEECCeeEEeeceEEEcCC-------CEEEEECCCCCCHHHHHHHHcC
Confidence            3456667899999999999       9999999999999999999954

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.51  E-value=1.1e-07  Score=81.00  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=34.0

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .....+++++|++++|       ++++|+||||+|||||||+++
T Consensus        32 ~~~~il~~vs~~i~~G-------e~~~i~G~NGsGKSTLl~~i~   68 (236)
T cd03267          32 REVEALKGISFTIEKG-------EIVGFIGPNGAGKTTTLKILS   68 (236)
T ss_pred             CCeeeeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4567899999999999       999999999999999999984

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.50  E-value=1.1e-07  Score=80.59  Aligned_cols=35  Identities=29%  Similarity=0.461  Sum_probs=32.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        16 ~~l~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   50 (234)
T cd03251          16 PVLRDISLDIPAG-------ETVALVGPSGSGKSTLVNLIPR   50 (234)
T ss_pred             cceeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5789999999999       9999999999999999999943

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.4e-07  Score=82.68  Aligned_cols=35  Identities=17%  Similarity=0.207  Sum_probs=32.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        25 ~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   59 (289)
T PRK13645         25 KALNNTSLTFKKN-------KVTCVIGTTGSGKSTMIQLTNG   59 (289)
T ss_pred             ceeeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999       9999999999999999999943

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.50  E-value=1.4e-07  Score=88.81  Aligned_cols=50  Identities=26%  Similarity=0.332  Sum_probs=41.1

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++++.++        ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         3 ~~i~~~~l--------~~~~~~~~~l~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~l~G   52 (501)
T PRK10762          3 ALLQLKGI--------DKAFPGVKALSGAALNVYPG-------RVMALVGENGAGKSTMMKVLTG   52 (501)
T ss_pred             ceEEEeee--------EEEeCCeEEeeeeeEEEcCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            35666654        33456667899999999999       9999999999999999999943

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.50  E-value=1.5e-07  Score=77.72  Aligned_cols=38  Identities=18%  Similarity=0.290  Sum_probs=32.4

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++....++ ++|++++|       ++++|+||||+|||||||+++-
T Consensus        11 ~~~~~l~~-vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   48 (195)
T PRK13541         11 IEQKNLFD-LSITFLPS-------AITYIKGANGCGKSSLLRMIAG   48 (195)
T ss_pred             ECCcEEEE-EEEEEcCC-------cEEEEECCCCCCHHHHHHHHhc
Confidence            34455565 99999999       9999999999999999999943

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.5e-07  Score=88.72  Aligned_cols=50  Identities=22%  Similarity=0.274  Sum_probs=41.6

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus         4 ~~l~~~nl--------~~~~~~~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   53 (506)
T PRK13549          4 YLLEMKNI--------TKTFGGVKALDNVSLKVRAG-------EIVSLCGENGAGKSTLMKVLSG   53 (506)
T ss_pred             ceEEEeee--------EEEeCCeEeecceeEEEeCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            45666655        34456667999999999999       9999999999999999999953

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.50  E-value=1.5e-07  Score=85.04  Aligned_cols=42  Identities=24%  Similarity=0.325  Sum_probs=36.7

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++...+++++|++++|       ++++|.||||+|||||||+++-
T Consensus        11 ~~~~~~~~~l~~vs~~i~~G-------e~~~l~GpsGsGKSTLLr~iaG   52 (353)
T TIGR03265        11 RKRFGAFTALKDISLSVKKG-------EFVCLLGPSGCGKTTLLRIIAG   52 (353)
T ss_pred             EEEeCCeEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHC
Confidence            33456667899999999999       9999999999999999999954

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.4e-07  Score=81.93  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        22 ~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   57 (271)
T PRK13632         22 NNALKNVSFEINEG-------EYVAILGHNGSGKSTISKILTG   57 (271)
T ss_pred             ccceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            46899999999999       9999999999999999999953

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.49  E-value=1.8e-07  Score=80.94  Aligned_cols=36  Identities=31%  Similarity=0.306  Sum_probs=33.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        24 ~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   59 (265)
T TIGR02769        24 APVLTNVSLSIEEG-------ETVGLLGRSGCGKSTLARLLLG   59 (265)
T ss_pred             eEEeeCceeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999       9999999999999999999843

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.4e-07  Score=91.54  Aligned_cols=42  Identities=24%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus         8 s~~~g~~~~l~~vs~~i~~G-------e~v~LvG~NGsGKSTLLkiL~G   49 (638)
T PRK10636          8 QIRRGVRVLLDNATATINPG-------QKVGLVGKNGCGKSTLLALLKN   49 (638)
T ss_pred             EEEeCCceeecCcEEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            34467778999999999999       9999999999999999999943

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.7e-07  Score=80.33  Aligned_cols=40  Identities=23%  Similarity=0.288  Sum_probs=35.7

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++...+++++|++.+|       ++++|+||||+|||||||+++.+
T Consensus        15 ~~~~~~l~~is~~i~~G-------e~~~I~G~nGsGKSTLl~~i~G~   54 (251)
T PRK14244         15 YGSKQILFDINLDIYKR-------EVTAFIGPSGCGKSTFLRCFNRM   54 (251)
T ss_pred             ECCeeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHHhh
Confidence            45567899999999999       99999999999999999999543

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.49  E-value=1.2e-07  Score=80.19  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++....+++++|++++|       ++++|+||||+|||||+|+++
T Consensus        31 ~~~~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~l~   69 (224)
T cd03220          31 EVGEFWALKDVSFEVPRG-------ERIGLIGRNGAGKSTLLRLLA   69 (224)
T ss_pred             hcCCeEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            456677999999999999       999999999999999999994

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=1.5e-07  Score=82.29  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+.+++|++++|       ++++|+||||+|||||||+++
T Consensus        20 ~~~l~~vsl~i~~G-------e~~~i~G~nGaGKSTLl~~i~   54 (279)
T PRK13635         20 TYALKDVSFSVYEG-------EWVAIVGHNGSGKSTLAKLLN   54 (279)
T ss_pred             ccceeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            35899999999999       999999999999999999985

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.49  E-value=1.5e-07  Score=79.00  Aligned_cols=36  Identities=19%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        17 ~~~l~~i~~~i~~G-------~~~~i~G~nGsGKSTLl~~i~G   52 (220)
T cd03245          17 IPALDNVSLTIRAG-------EKVAIIGRVGSGKSTLLKLLAG   52 (220)
T ss_pred             cccccceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45899999999999       9999999999999999999943

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=1.6e-07  Score=81.96  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=33.6

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        16 ~~~~l~~vsl~i~~G-------e~~~i~G~NGsGKSTLl~~l~G   52 (277)
T PRK13652         16 SKEALNNINFIAPRN-------SRIAVIGPNGAGKSTLFRHFNG   52 (277)
T ss_pred             CCceeeEeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            345899999999999       9999999999999999999953

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.49  E-value=1.3e-07  Score=76.81  Aligned_cols=36  Identities=31%  Similarity=0.418  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+.+++|++.+|       +.++|+||||+|||||||+++.
T Consensus        15 ~~~l~~~~~~i~~G-------e~~~i~G~nGsGKStLl~~l~G   50 (173)
T cd03246          15 PPVLRNVSFSIEPG-------ESLAIIGPSGSGKSTLARLILG   50 (173)
T ss_pred             CcceeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            35788999999999       9999999999999999999954

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.49  E-value=1.5e-07  Score=88.65  Aligned_cols=49  Identities=31%  Similarity=0.372  Sum_probs=40.8

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         4 ~~l~~~~l--------~~~~~~~~il~~vs~~i~~G-------e~~~liG~nGsGKSTLl~~i~   52 (510)
T PRK09700          4 PYISMAGI--------GKSFGPVHALKSVNLTVYPG-------EIHALLGENGAGKSTLMKVLS   52 (510)
T ss_pred             ceEEEeee--------EEEcCCeEEeeeeeEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence            45666655        34456667899999999999       999999999999999999994

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.48  E-value=1.9e-07  Score=78.51  Aligned_cols=36  Identities=28%  Similarity=0.548  Sum_probs=33.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        18 ~~il~~vs~~i~~G-------~~~~I~G~nGsGKStLl~~l~G   53 (220)
T TIGR02982        18 KQVLFDINLEINPG-------EIVILTGPSGSGKTTLLTLIGG   53 (220)
T ss_pred             eeEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            56899999999999       9999999999999999999953

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.48  E-value=1.7e-07  Score=78.70  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=32.8

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        18 ~~l~~i~~~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   52 (221)
T cd03244          18 PVLKNISFSIKPG-------EKVGIVGRTGSGKSSLLLALFR   52 (221)
T ss_pred             ccccceEEEECCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence            6899999999999       9999999999999999999954

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.8e-07  Score=84.24  Aligned_cols=36  Identities=22%  Similarity=0.412  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        18 ~~il~~vsl~i~~G-------ei~~iiG~nGsGKSTLlk~L~G   53 (343)
T PRK11153         18 IHALNNVSLHIPAG-------EIFGVIGASGAGKSTLIRCINL   53 (343)
T ss_pred             eEEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            46899999999999       9999999999999999999843

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.47  E-value=2e-07  Score=84.91  Aligned_cols=50  Identities=26%  Similarity=0.380  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.++        ...+++...+++++|+++.|       ++++|.||||||||||||+|+-
T Consensus        13 ~~L~l~~l--------~~~~~~~~~l~~vsl~i~~G-------e~~~LlGpsGsGKSTLLr~IaG   62 (375)
T PRK09452         13 PLVELRGI--------SKSFDGKEVISNLDLTINNG-------EFLTLLGPSGCGKTTVLRLIAG   62 (375)
T ss_pred             ceEEEEEE--------EEEECCeEEEeeeEEEEeCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            56777665        34456667899999999999       9999999999999999999953

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.7e-07  Score=81.64  Aligned_cols=36  Identities=28%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+.+++|++.+|       ++++|.||||+|||||||+++-
T Consensus        15 ~~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   50 (275)
T PRK13639         15 TEALKGINFKAEKG-------EMVALLGPNGAGKSTLFLHFNG   50 (275)
T ss_pred             CeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999       9999999999999999999943

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.9e-07  Score=81.73  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.+++|++.+|       ++++|+||||+|||||||+++-
T Consensus        21 ~~l~~v~l~i~~G-------e~~~I~G~nGaGKSTLl~~l~G   55 (282)
T PRK13640         21 PALNDISFSIPRG-------SWTALIGHNGSGKSTISKLING   55 (282)
T ss_pred             cceeeEEEEEcCC-------CEEEEECCCCCcHHHHHHHHhc
Confidence            5899999999999       9999999999999999999943

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.47  E-value=1.7e-07  Score=78.12  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=32.6

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+++++|++++|        +++|+||||+|||||||+++
T Consensus        10 ~~~~~~l~~vs~~i~~g--------~~~i~G~nGsGKSTLl~~l~   46 (211)
T cd03264          10 YGKKRALDGVSLTLGPG--------MYGLLGPNGAGKTTLMRILA   46 (211)
T ss_pred             ECCEEEEcceeEEEcCC--------cEEEECCCCCCHHHHHHHHh
Confidence            45667899999999776        89999999999999999994

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.46  E-value=2e-07  Score=87.97  Aligned_cols=49  Identities=27%  Similarity=0.339  Sum_probs=41.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~l~~~~l--------~~~~~~~~il~~vsl~i~~G-------e~~~liG~NGsGKSTLl~~l~   58 (510)
T PRK15439         10 PLLCARSI--------SKQYSGVEVLKGIDFTLHAG-------EVHALLGGNGAGKSTLMKIIA   58 (510)
T ss_pred             ceEEEEeE--------EEEeCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            46677665        34456667899999999999       999999999999999999984

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.46  E-value=1.9e-07  Score=90.39  Aligned_cols=42  Identities=24%  Similarity=0.326  Sum_probs=37.1

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++...+.+++|++++|       ++++|+||||+|||||||+++-
T Consensus        10 s~~~~~~~il~~is~~i~~G-------e~v~LvG~NGsGKSTLLriiaG   51 (635)
T PRK11147         10 WLSFSDAPLLDNAELHIEDN-------ERVCLVGRNGAGKSTLMKILNG   51 (635)
T ss_pred             EEEeCCceeEeCcEEEECCC-------CEEEEECCCCCCHHHHHHHHcC
Confidence            34457778999999999999       9999999999999999999843

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=1.8e-07  Score=81.64  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++
T Consensus        21 ~~l~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~i~   54 (280)
T PRK13649         21 RALFDVNLTIEDG-------SYTAFIGHTGSGKSTIMQLLN   54 (280)
T ss_pred             ceeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            4889999999999       999999999999999999984

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.46  E-value=1.5e-07  Score=80.44  Aligned_cols=39  Identities=33%  Similarity=0.577  Sum_probs=35.0

Q ss_pred             eeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++. ..+++++++++.|       +.++|+|||||||||++|+++
T Consensus        12 ~y~~~~~~l~~v~~~i~~G-------e~~~i~G~nGsGKSTL~~~l~   51 (235)
T COG1122          12 RYPGRKAALKDVSLEIEKG-------ERVLLIGPNGSGKSTLLKLLN   51 (235)
T ss_pred             EcCCCceeeeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            34554 8999999999999       999999999999999999984

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=2.3e-07  Score=81.19  Aligned_cols=50  Identities=20%  Similarity=0.240  Sum_probs=40.2

Q ss_pred             ceEEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++++.++        ...++ ....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus         4 ~~l~~~~l--------~~~~~~~~~~l~~vs~~i~~G-------e~~~i~G~nGaGKSTLl~~i~G   54 (283)
T PRK13636          4 YILKVEEL--------NYNYSDGTHALKGININIKKG-------EVTAILGGNGAGKSTLFQNLNG   54 (283)
T ss_pred             ceEEEEeE--------EEEeCCCCeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            35666655        33344 356999999999999       9999999999999999999943

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=1.6e-07  Score=81.92  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        15 ~~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   49 (274)
T PRK13644         15 TPALENINLVIKKG-------EYIGIIGKNGSGKSTLALHLN   49 (274)
T ss_pred             CceeeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999       999999999999999999994

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.46  E-value=1.7e-07  Score=79.48  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+.+++|++.+|       ++++|+||||+|||||||+++.
T Consensus        14 ~~~l~~i~~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   49 (236)
T cd03253          14 RPVLKDVSFTIPAG-------KKVAIVGPSGSGKSTILRLLFR   49 (236)
T ss_pred             CceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            45889999999999       9999999999999999999953

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.46  E-value=2.1e-07  Score=84.10  Aligned_cols=41  Identities=27%  Similarity=0.448  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|.||||+|||||||+|+-
T Consensus        10 ~~~~~~~~l~~isl~i~~G-------e~~~llGpsGsGKSTLLr~IaG   50 (353)
T PRK10851         10 KSFGRTQVLNDISLDIPSG-------QMVALLGPSGSGKTTLLRIIAG   50 (353)
T ss_pred             EEeCCeEEEEEeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            3456667899999999999       9999999999999999999954

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.46  E-value=2.5e-07  Score=77.01  Aligned_cols=35  Identities=26%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        22 ~~l~~isl~i~~G-------~~~~i~G~nGsGKSTLl~~l~G   56 (207)
T cd03369          22 PVLKNVSFKVKAG-------EKIGIVGRTGAGKSTLILALFR   56 (207)
T ss_pred             ccccCceEEECCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999       9999999999999999999943

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.46  E-value=1.6e-07  Score=81.54  Aligned_cols=40  Identities=23%  Similarity=0.367  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+.+++|++++|       ++++|+||||+|||||||+++.
T Consensus        33 ~~~~~~il~~is~~i~~G-------e~~~l~G~nGsGKSTLl~~L~G   72 (269)
T cd03294          33 KTGQTVGVNDVSLDVREG-------EIFVIMGLSGSGKSTLLRCINR   72 (269)
T ss_pred             hcCCceEeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            356667899999999999       9999999999999999999843

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.45  E-value=2.5e-07  Score=83.74  Aligned_cols=38  Identities=34%  Similarity=0.498  Sum_probs=34.6

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++...+++++|++.+|       ++++|.||||+|||||||+++.
T Consensus        15 ~~~~~l~~vsl~i~~G-------e~~~llG~sGsGKSTLLr~iaG   52 (356)
T PRK11650         15 GKTQVIKGIDLDVADG-------EFIVLVGPSGCGKSTLLRMVAG   52 (356)
T ss_pred             CCCEEEeeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHHC
Confidence            4567899999999999       9999999999999999999954

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.4e-07  Score=87.80  Aligned_cols=49  Identities=22%  Similarity=0.234  Sum_probs=41.1

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus       318 ~~l~~~~l--------~~~~~~~~~l~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~i~  366 (530)
T PRK15064        318 NALEVENL--------TKGFDNGPLFKNLNLLLEAG-------ERLAIIGENGVGKTTLLRTLV  366 (530)
T ss_pred             ceEEEEee--------EEeeCCceeecCcEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            46666665        33456667899999999999       999999999999999999984

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.45  E-value=2.2e-07  Score=87.19  Aligned_cols=40  Identities=20%  Similarity=0.288  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        12 ~~~~~~il~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~l~G   51 (490)
T PRK10938         12 RLSDTKTLQLPSLTLNAG-------DSWAFVGANGSGKSALARALAG   51 (490)
T ss_pred             EcCCeeecccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            356667899999999999       9999999999999999999943

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.45  E-value=2.5e-07  Score=88.18  Aligned_cols=50  Identities=24%  Similarity=0.308  Sum_probs=42.0

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus       320 ~~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~l~  369 (552)
T TIGR03719       320 DKVIEAENL--------SKGFGDKLLIDDLSFKLPPG-------GIVGVIGPNGAGKSTLFRMIT  369 (552)
T ss_pred             CeEEEEeeE--------EEEECCeeeeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            356777665        34457778999999999999       999999999999999999984

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=2.3e-07  Score=87.90  Aligned_cols=39  Identities=28%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++....+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~il~~vsl~i~~G-------e~~~liG~NGsGKSTLl~~l~   48 (530)
T PRK15064         10 QFGAKPLFENISVKFGGG-------NRYGLIGANGCGKSTFMKILG   48 (530)
T ss_pred             EeCCcEeEeCCEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            356667999999999999       999999999999999999994

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=2.6e-07  Score=80.73  Aligned_cols=35  Identities=26%  Similarity=0.489  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+.+++|++.+|       ++++|+||||+|||||||+++
T Consensus        23 ~~vl~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   57 (280)
T PRK13633         23 KLALDDVNLEVKKG-------EFLVILGRNGSGKSTIAKHMN   57 (280)
T ss_pred             cceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            35999999999999       999999999999999999994

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.44  E-value=2.6e-07  Score=87.01  Aligned_cols=49  Identities=31%  Similarity=0.425  Sum_probs=40.9

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      |.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         3 ~~l~~~~l--------~~~~~~~~il~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   51 (501)
T PRK11288          3 PYLSFDGI--------GKTFPGVKALDDISFDCRAG-------QVHALMGENGAGKSTLLKILS   51 (501)
T ss_pred             ceEEEeee--------EEEECCEEEEeeeeEEEeCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            45666654        33456667899999999999       999999999999999999994

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=2.9e-07  Score=83.96  Aligned_cols=51  Identities=20%  Similarity=0.289  Sum_probs=42.1

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+|+.
T Consensus        17 ~~~l~l~~v--------~~~~~~~~~l~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~IaG   67 (377)
T PRK11607         17 TPLLEIRNL--------TKSFDGQHAVDDVSLTIYKG-------EIFALLGASGCGKSTLLRMLAG   67 (377)
T ss_pred             CceEEEEeE--------EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            356777665        34456667899999999999       9999999999999999999954

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.44  E-value=2.8e-07  Score=79.24  Aligned_cols=37  Identities=22%  Similarity=0.196  Sum_probs=33.7

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        15 ~~~il~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~G   51 (254)
T PRK10418         15 AQPLVHGVSLTLQRG-------RVLALVGGSGSGKSLTCAAALG   51 (254)
T ss_pred             ccceecceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            346899999999999       9999999999999999999943

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=2.2e-07  Score=81.44  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        21 ~~l~~vsl~i~~G-------e~~~iiG~NGaGKSTLl~~l~G   55 (287)
T PRK13641         21 KGLDNISFELEEG-------SFVALVGHTGSGKSTLMQHFNA   55 (287)
T ss_pred             cceeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999       9999999999999999999843

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=2.3e-07  Score=81.36  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        21 ~~l~~vs~~i~~G-------e~~~i~G~nGaGKSTLl~~l~   54 (287)
T PRK13637         21 KALDNVNIEIEDG-------EFVGLIGHTGSGKSTLIQHLN   54 (287)
T ss_pred             ceeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            5899999999999       999999999999999999994

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=2.6e-07  Score=80.68  Aligned_cols=35  Identities=29%  Similarity=0.328  Sum_probs=32.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.+++|++++|       ++++|+||||+|||||||+++-
T Consensus        21 ~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   55 (279)
T PRK13650         21 YTLNDVSFHVKQG-------EWLSIIGHNGSGKSTTVRLIDG   55 (279)
T ss_pred             eeeeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            4899999999999       9999999999999999999843

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.44  E-value=2e-07  Score=79.14  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        17 ~~l~~i~~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   51 (238)
T cd03249          17 PILKGLSLTIPPG-------KTVALVGSSGCGKSTVVSLLER   51 (238)
T ss_pred             cceeceEEEecCC-------CEEEEEeCCCCCHHHHHHHHhc
Confidence            5889999999999       9999999999999999999954

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.43  E-value=2.6e-07  Score=88.01  Aligned_cols=49  Identities=18%  Similarity=0.246  Sum_probs=40.3

Q ss_pred             ceEEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++++.++        ...++ ....+++++|++++|       ++++|+||||+|||||||+++
T Consensus         3 ~~i~~~nl--------s~~~~~~~~il~~is~~i~~G-------e~~~liG~NGsGKSTLl~~i~   52 (552)
T TIGR03719         3 YIYTMNRV--------SKVVPPKKEILKDISLSFFPG-------AKIGVLGLNGAGKSTLLRIMA   52 (552)
T ss_pred             EEEEEeeE--------EEecCCCCeeecCceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45666655        33345 557899999999999       999999999999999999994

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.43  E-value=2.4e-07  Score=73.76  Aligned_cols=39  Identities=28%  Similarity=0.486  Sum_probs=34.7

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++...+.+++|++++|       ++++|+||||+|||||||+++.
T Consensus         9 ~~~~~~l~~~~~~i~~g-------~~~~i~G~nGsGKStll~~l~g   47 (157)
T cd00267           9 YGGRTALDNVSLTLKAG-------EIVALVGPNGSGKSTLLRAIAG   47 (157)
T ss_pred             eCCeeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            45557899999999999       9999999999999999999954

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.43  E-value=2.4e-07  Score=78.63  Aligned_cols=36  Identities=28%  Similarity=0.544  Sum_probs=33.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..+++++|++++|       +.++|+||+||||||||..+|.+
T Consensus        19 ~~L~~v~l~i~~G-------e~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          19 EALKDVNLEIEAG-------EFVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EecccceEEEcCC-------CEEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999       99999999999999999999653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=2.3e-07  Score=81.58  Aligned_cols=36  Identities=22%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...|++++|++++|       ++++|.||||+|||||||+++.
T Consensus        20 ~~~L~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   55 (290)
T PRK13634         20 RRALYDVNVSIPSG-------SYVAIIGHTGSGKSTLLQHLNG   55 (290)
T ss_pred             ccceeeEEEEEcCC-------CEEEEECCCCCcHHHHHHHHhc
Confidence            35899999999999       9999999999999999999953

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.43  E-value=2.8e-07  Score=83.59  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=36.2

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++....+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        13 ~~~~~~~~l~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG   53 (362)
T TIGR03258        13 VAYGANTVLDDLSLEIEAG-------ELLALIGKSGCGKTTLLRAIAG   53 (362)
T ss_pred             EEECCeEEEeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            3446667899999999999       9999999999999999999954

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.43  E-value=2.9e-07  Score=78.13  Aligned_cols=49  Identities=20%  Similarity=0.358  Sum_probs=41.1

Q ss_pred             ceEEeccccCcccCCCceee-CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYI-PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~v-p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++++        +..+ .....|.++++++++|       ++++|.||+|+|||||||.+.
T Consensus         2 ~~i~~~nl--------~k~yp~~~~aL~~Vnl~I~~G-------E~VaiIG~SGaGKSTLLR~ln   51 (258)
T COG3638           2 MMIEVKNL--------SKTYPGGHQALKDVNLEINQG-------EMVAIIGPSGAGKSTLLRSLN   51 (258)
T ss_pred             ceEEEeee--------eeecCCCceeeeeEeEEeCCC-------cEEEEECCCCCcHHHHHHHHh
Confidence            34666665        4445 5668999999999999       999999999999999999984

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.43  E-value=3e-07  Score=87.67  Aligned_cols=49  Identities=22%  Similarity=0.317  Sum_probs=41.7

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus       323 ~~l~~~~l--------~~~~~~~~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~i~  371 (556)
T PRK11819        323 KVIEAENL--------SKSFGDRLLIDDLSFSLPPG-------GIVGIIGPNGAGKSTLFKMIT  371 (556)
T ss_pred             eEEEEEeE--------EEEECCeeeecceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            46777665        34456778999999999999       999999999999999999994

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.42  E-value=3.6e-07  Score=81.81  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++.+|       ++++|+|+||+|||||+|+++.
T Consensus        20 ~~~l~~vsl~i~~G-------e~~~ivG~sGsGKSTLl~~i~G   55 (330)
T PRK15093         20 VKAVDRVSMTLTEG-------EIRGLVGESGSGKSLIAKAICG   55 (330)
T ss_pred             EEEEeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence            46899999999999       9999999999999999999843

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=2.7e-07  Score=81.75  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=32.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        21 ~~l~~vsl~i~~G-------e~v~iiG~nGsGKSTLl~~L~G   55 (305)
T PRK13651         21 KALDNVSVEINQG-------EFIAIIGQTGSGKTTFIEHLNA   55 (305)
T ss_pred             cceeeeEEEEeCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            5899999999999       9999999999999999999943

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.41  E-value=2.5e-07  Score=78.48  Aligned_cols=35  Identities=20%  Similarity=0.378  Sum_probs=32.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        15 ~~~l~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   49 (237)
T cd03252          15 PVILDNISLRIKPG-------EVVGIVGRSGSGKSTLTKLIQ   49 (237)
T ss_pred             ccceeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45789999999999       999999999999999999994

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.41  E-value=2.4e-07  Score=77.71  Aligned_cols=37  Identities=14%  Similarity=0.221  Sum_probs=33.4

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +...+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        13 ~~~il~~vs~~i~~G-------e~~~i~G~nGsGKSTLl~~i~G   49 (218)
T cd03290          13 GLATLSNINIRIPTG-------QLTMIVGQVGCGKSSLLLAILG   49 (218)
T ss_pred             CCcceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            346889999999999       9999999999999999999953

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.40  E-value=3.3e-07  Score=86.17  Aligned_cols=40  Identities=28%  Similarity=0.320  Sum_probs=35.6

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        10 ~~~~~~il~~isl~i~~G-------e~~~liG~nGsGKSTLl~~i~G   49 (500)
T TIGR02633        10 TFGGVKALDGIDLEVRPG-------ECVGLCGENGAGKSTLMKILSG   49 (500)
T ss_pred             EeCCeEeecceEEEEeCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            345667899999999999       9999999999999999999943

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.40  E-value=3e-07  Score=76.42  Aligned_cols=42  Identities=24%  Similarity=0.388  Sum_probs=38.3

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.+.++.+++++|++++.|       ....|.||||+||||||-+++=
T Consensus         8 ~K~y~~~~vl~~isl~i~~g-------~iTs~IGPNGAGKSTLLS~~sR   49 (252)
T COG4604           8 SKSYGTKVVLDDVSLDIPKG-------GITSIIGPNGAGKSTLLSMMSR   49 (252)
T ss_pred             hHhhCCEEeeccceeeecCC-------ceeEEECCCCccHHHHHHHHHH
Confidence            56688999999999999999       8999999999999999988753

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.39  E-value=3.1e-07  Score=86.82  Aligned_cols=40  Identities=28%  Similarity=0.343  Sum_probs=35.9

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++...+++++|++++|       ++++|+||||+|||||||+++.+
T Consensus        10 ~~~~~~l~~is~~i~~G-------e~~~iiG~nGsGKSTLl~~l~Gl   49 (520)
T TIGR03269        10 FDGKEVLKNISFTIEEG-------EVLGILGRSGAGKSVLMHVLRGM   49 (520)
T ss_pred             ECCeEeeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHhhc
Confidence            46667899999999999       99999999999999999999544

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=4.4e-07  Score=80.96  Aligned_cols=50  Identities=12%  Similarity=0.193  Sum_probs=40.7

Q ss_pred             CceEEeccccCcccCCCceeeCC-----eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPN-----STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~-----~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+.++++++        ...++.     ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        19 ~~~l~~~nl--------~~~y~~~~~~~~~~L~~vsl~i~~G-------e~~~I~G~nGsGKSTLl~~L~   73 (320)
T PRK13631         19 DIILRVKNL--------YCVFDEKQENELVALNNISYTFEKN-------KIYFIIGNSGSGKSTLVTHFN   73 (320)
T ss_pred             CceEEEEeE--------EEEeCCCCcccccceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            367888776        223332     25899999999999       999999999999999999994

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=3.6e-07  Score=80.08  Aligned_cols=35  Identities=23%  Similarity=0.417  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|.||||+|||||||+++-
T Consensus        21 ~~l~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~L~G   55 (286)
T PRK13646         21 QAIHDVNTEFEQG-------KYYAIVGQTGSGKSTLIQNINA   55 (286)
T ss_pred             CceeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999       9999999999999999999953

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.39  E-value=5.3e-07  Score=80.85  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+|+||+|||||+|+++
T Consensus        34 ~~~l~~vsl~i~~G-------e~~~lvG~sGsGKSTLlk~i~   68 (331)
T PRK15079         34 LKAVDGVTLRLYEG-------ETLGVVGESGCGKSTFARAII   68 (331)
T ss_pred             eEEEeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            35889999999999       999999999999999999984

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=4.6e-07  Score=81.05  Aligned_cols=34  Identities=24%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++.+|       ++++|+|+||+|||||+|+++
T Consensus        21 ~~l~~vsl~i~~G-------e~~~lvG~sGsGKSTL~~~l~   54 (326)
T PRK11022         21 RAVDRISYSVKQG-------EVVGIVGESGSGKSVSSLAIM   54 (326)
T ss_pred             EEEeeeEEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence            5899999999999       999999999999999999984

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.39  E-value=4e-07  Score=82.02  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=32.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        19 ~~L~~vsl~i~~G-------ei~gIiG~sGaGKSTLlr~I~g   53 (343)
T TIGR02314        19 QALNNVSLHVPAG-------QIYGVIGASGAGKSTLIRCVNL   53 (343)
T ss_pred             EEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            6899999999999       9999999999999999999954

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.39  E-value=3.2e-07  Score=78.14  Aligned_cols=39  Identities=18%  Similarity=0.235  Sum_probs=34.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ......|++++|++..|       +.++|.|+||+|||||||.++-
T Consensus        37 ~~~~~aL~disf~i~~G-------e~vGiiG~NGaGKSTLlkliaG   75 (249)
T COG1134          37 VAEFWALKDISFEIYKG-------ERVGIIGHNGAGKSTLLKLIAG   75 (249)
T ss_pred             cceEEEecCceEEEeCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            34457899999999999       9999999999999999999853

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.39  E-value=3.7e-07  Score=78.67  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+|+||+|||||||+++.
T Consensus        34 ~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLl~~l~G   69 (257)
T cd03288          34 KPVLKHVKAYIKPG-------QKVGICGRTGSGKSSLSLAFFR   69 (257)
T ss_pred             CcceeEEEEEEcCC-------CEEEEECCCCCCHHHHHHHHHc
Confidence            36899999999999       9999999999999999999843

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=3.7e-07  Score=80.13  Aligned_cols=35  Identities=26%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++-
T Consensus        20 ~~l~~vsl~i~~G-------e~v~i~G~nGsGKSTLl~~l~G   54 (288)
T PRK13643         20 RALFDIDLEVKKG-------SYTALIGHTGSGKSTLLQHLNG   54 (288)
T ss_pred             cceeeeEEEEcCC-------CEEEEECCCCChHHHHHHHHhc
Confidence            4889999999999       9999999999999999999943

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=3.9e-07  Score=77.21  Aligned_cols=30  Identities=33%  Similarity=0.536  Sum_probs=28.3

Q ss_pred             CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++|++.+|       ++++|+||||+|||||||+++
T Consensus        17 ~is~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   46 (232)
T PRK10771         17 RFDLTVERG-------ERVAILGPSGAGKSTLLNLIA   46 (232)
T ss_pred             eeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            789999999       999999999999999999994

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.37  E-value=4.7e-07  Score=85.80  Aligned_cols=36  Identities=28%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        22 ~~~l~~isl~i~~G-------e~~~iiG~nGsGKSTLl~~i~G   57 (529)
T PRK15134         22 RTVVNDVSLQIEAG-------ETLALVGESGSGKSVTALSILR   57 (529)
T ss_pred             eeeeeceEEEEeCC-------CEEEEECCCCCcHHHHHHHHhc
Confidence            36899999999999       9999999999999999999843

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.37  E-value=4.1e-07  Score=76.37  Aligned_cols=49  Identities=29%  Similarity=0.416  Sum_probs=42.9

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++..++        .-|++....|+++++++..+       .+.+|.||.|||||||||++-
T Consensus         6 ~~~~~~~l--------~~yYg~~~aL~~i~l~i~~~-------~VTAlIGPSGcGKST~LR~lN   54 (253)
T COG1117           6 PAIEVRDL--------NLYYGDKHALKDINLDIPKN-------KVTALIGPSGCGKSTLLRCLN   54 (253)
T ss_pred             ceeEecce--------eEEECchhhhccCceeccCC-------ceEEEECCCCcCHHHHHHHHH
Confidence            45666655        57889999999999999999       999999999999999999973

>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family

Probab=98.36  E-value=1.5e-07  Score=82.52  Aligned_cols=103  Identities=7%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             cEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhcce-ee---------eecccccccchhh
Q psy13262         58 TRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQICERGG-VV---------DYKPQQSNNTIFS  126 (229)
Q Consensus        58 gRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~~~-~v---------~l~~l~~~~~~~~  126 (229)
                      | |+++++..++.+++|.+|+++..+.+ +..|.....+++........+.++.. ++         ....+....+.++
T Consensus       189 g-~~i~v~~~~~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~  267 (308)
T smart00533      189 G-YYIEVTKSEAKKVPKDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALA  267 (308)
T ss_pred             E-EEEEecchhhccCChHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5 99999999888899999999888877 88899888888877665544433310 00         1134456788899


Q ss_pred             hhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccC
Q psy13262        127 QRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCAT  165 (229)
Q Consensus       127 ~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~  165 (229)
                      ++|++.+++    .+++|+|++.++    +.+.+.++|||++.
T Consensus       268 ~lD~l~s~a~~a~~~~~~~P~i~~~----~~l~i~~~rHPlle  306 (308)
T smart00533      268 ELDVLLSLATLAAEGNYVRPEFVDS----GELEIKNGRHPVLE  306 (308)
T ss_pred             HHHHHHHHHHHHHHCCCcCCeeCCC----CCEEEeeCCCCccc
Confidence            999999976    688999999875    57899999999985

>PLN03073 ABC transporter F family; Provisional

Probab=98.35  E-value=5.1e-07  Score=88.59  Aligned_cols=48  Identities=21%  Similarity=0.188  Sum_probs=40.7

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|.+.++        ...++....|++++|++..|       ++++|+||||+|||||||.++
T Consensus       177 ~I~i~nl--------s~~y~~~~ll~~isl~i~~G-------e~~gLvG~NGsGKSTLLr~l~  224 (718)
T PLN03073        177 DIHMENF--------SISVGGRDLIVDASVTLAFG-------RHYGLVGRNGTGKTTFLRYMA  224 (718)
T ss_pred             eEEEceE--------EEEeCCCEEEECCEEEECCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            4666654        34456777999999999999       999999999999999999995

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=6.6e-07  Score=80.09  Aligned_cols=35  Identities=29%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++.+|       ++++|+|+||+|||||+|+++
T Consensus        28 ~~~l~~vsl~i~~G-------e~~~IvG~sGsGKSTLl~~l~   62 (327)
T PRK11308         28 VKALDGVSFTLERG-------KTLAVVGESGCGKSTLARLLT   62 (327)
T ss_pred             eeEEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHH
Confidence            35899999999999       999999999999999999984

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.35  E-value=4.6e-07  Score=85.18  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus       273 ~~~l~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~l~  307 (500)
T TIGR02633       273 RKRVDDVSFSLRRG-------EILGVAGLVGAGRTELVQALF  307 (500)
T ss_pred             ccccccceeEEeCC-------cEEEEeCCCCCCHHHHHHHHh
Confidence            45899999999999       999999999999999999994

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.34  E-value=5.9e-07  Score=85.12  Aligned_cols=41  Identities=22%  Similarity=0.317  Sum_probs=37.6

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++....+.++++++.+|       ++++|+|+||+|||||||.++
T Consensus        10 s~~~g~~~l~~~~~l~~~~G-------~riGLvG~NGaGKSTLLkila   50 (530)
T COG0488          10 SLAYGDRPLLENVSLTLNPG-------ERIGLVGRNGAGKSTLLKILA   50 (530)
T ss_pred             EEeeCCceeecCCcceeCCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            44568999999999999999       999999999999999999984

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=5.8e-07  Score=78.40  Aligned_cols=34  Identities=24%  Similarity=0.332  Sum_probs=32.1

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+.+++|++.+|       ++++|+|+||+|||||||+++
T Consensus        21 ~~l~~v~l~i~~G-------e~~~I~G~nGsGKSTLl~~l~   54 (277)
T PRK13642         21 NQLNGVSFSITKG-------EWVSIIGQNGSGKSTTARLID   54 (277)
T ss_pred             eeeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            4899999999999       999999999999999999984

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.34  E-value=4.8e-07  Score=78.60  Aligned_cols=37  Identities=27%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ....+.+++|++.+|       ++++|+||||+|||||||+++-
T Consensus        36 ~~~il~~is~~i~~G-------e~~~liG~NGsGKSTLlk~L~G   72 (264)
T PRK13546         36 TFFALDDISLKAYEG-------DVIGLVGINGSGKSTLSNIIGG   72 (264)
T ss_pred             ceEEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            345788999999999       9999999999999999999943

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.33  E-value=2.2e-07  Score=79.15  Aligned_cols=40  Identities=25%  Similarity=0.420  Sum_probs=36.5

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .+.++.=..+++++|++++|       ++++|.||||+||||+++.+
T Consensus        11 ~k~FGGl~Al~~Vsl~v~~G-------ei~~LIGPNGAGKTTlfNli   50 (250)
T COG0411          11 SKRFGGLTAVNDVSLEVRPG-------EIVGLIGPNGAGKTTLFNLI   50 (250)
T ss_pred             eeecCCEEEEeceeEEEcCC-------eEEEEECCCCCCceeeeeee
Confidence            45567778999999999999       99999999999999999987

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.32  E-value=4.2e-07  Score=75.01  Aligned_cols=42  Identities=24%  Similarity=0.399  Sum_probs=36.5

Q ss_pred             ceeeCCee-EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNST-VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~-~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+-||+.. .|.+++|.+.+|       +++-||||+|+|||||||++..
T Consensus         8 ~k~Y~~g~~aL~~vs~~i~~G-------ef~fl~GpSGAGKSTllkLi~~   50 (223)
T COG2884           8 SKAYPGGREALRDVSFHIPKG-------EFVFLTGPSGAGKSTLLKLIYG   50 (223)
T ss_pred             hhhcCCCchhhhCceEeecCc-------eEEEEECCCCCCHHHHHHHHHh
Confidence            34456655 899999999999       9999999999999999999854

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=6.8e-07  Score=75.66  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=34.9

Q ss_pred             eeeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+..+ .+|++++++++.|       ++-+|.||||+|||||.+++.
T Consensus        11 v~v~~~keILkgvnL~v~~G-------EvhaiMGPNGsGKSTLa~~i~   51 (251)
T COG0396          11 VEVEGKKEILKGVNLTVKEG-------EVHAIMGPNGSGKSTLAYTIM   51 (251)
T ss_pred             EEecCchhhhcCcceeEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            345553 8999999999999       999999999999999998773

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.32  E-value=6.4e-07  Score=84.88  Aligned_cols=36  Identities=28%  Similarity=0.227  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus       299 ~~il~~isl~i~~G-------e~~~i~G~nGsGKSTLlk~l~G  334 (529)
T PRK15134        299 NVVVKNISFTLRPG-------ETLGLVGESGSGKSTTGLALLR  334 (529)
T ss_pred             ceeeecceeEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999       9999999999999999999953

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.32  E-value=2.8e-07  Score=76.72  Aligned_cols=41  Identities=24%  Similarity=0.386  Sum_probs=34.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +|-+....+.+++|.++.|       ++++|.||||+||||+||+++-
T Consensus        10 ~y~~~v~AvrdVSF~ae~G-------ei~GlLG~NGAGKTT~LRmiat   50 (245)
T COG4555          10 SYGSKVQAVRDVSFEAEEG-------EITGLLGENGAGKTTLLRMIAT   50 (245)
T ss_pred             hccCHHhhhhheeEEeccc-------eEEEEEcCCCCCchhHHHHHHH
Confidence            4433333788999999999       9999999999999999999954

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.32  E-value=8.1e-07  Score=83.98  Aligned_cols=35  Identities=17%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus       297 ~~il~~is~~i~~G-------e~~~l~G~NGsGKSTLl~~l~  331 (520)
T TIGR03269       297 VKAVDNVSLEVKEG-------EIFGIVGTSGAGKTTLSKIIA  331 (520)
T ss_pred             ceEEeeEEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999       999999999999999999994

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.31  E-value=8.7e-07  Score=72.64  Aligned_cols=37  Identities=27%  Similarity=0.336  Sum_probs=30.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++...+.+. +++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~~~~~l~~~-~~i~~G-------e~~~l~G~nGsGKSTLl~~l~   46 (177)
T cd03222          10 YGVFFLLVEL-GVVKEG-------EVIGIVGPNGTGKTTAVKILA   46 (177)
T ss_pred             ECCEEEEccC-cEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence            4555566664 788888       999999999999999999984

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=6.6e-07  Score=84.34  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=32.5

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus       275 ~~vl~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~i~  309 (506)
T PRK13549        275 IKRVDDVSFSLRRG-------EILGIAGLVGAGRTELVQCLF  309 (506)
T ss_pred             cccccceeeEEcCC-------cEEEEeCCCCCCHHHHHHHHh
Confidence            35789999999999       999999999999999999994

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.30  E-value=6.5e-07  Score=76.12  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=31.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++++|++.+|       ++++|+||||+|||||||+++.
T Consensus        14 ~l~~is~~i~~G-------e~~~i~G~nG~GKStLl~~l~G   47 (235)
T cd03299          14 KLKNVSLEVERG-------DYFVILGPTGSGKSVLLETIAG   47 (235)
T ss_pred             eeeeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            699999999999       9999999999999999999943

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0064|consensus

Probab=98.30  E-value=1.2e-06  Score=81.89  Aligned_cols=39  Identities=36%  Similarity=0.585  Sum_probs=34.7

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++.+..++|++++|       .++.||||||||||.++|.+|-+
T Consensus       493 ~~~vvv~~Ltf~i~~G-------~hLLItGPNGCGKSSLfRILggL  531 (728)
T KOG0064|consen  493 AGDVLVPKLTFQIEPG-------MHLLITGPNGCGKSSLFRILGGL  531 (728)
T ss_pred             CcceeecceeEEecCC-------ceEEEECCCCccHHHHHHHHhcc
Confidence            3567888999999999       99999999999999999999643

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.30  E-value=6.4e-07  Score=77.03  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=36.5

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ++.+.+...+++++|+++.|       +.+++.||+||||||+||+|
T Consensus         8 sk~y~~~~av~~v~l~I~~g-------ef~vliGpSGsGKTTtLkMI   47 (309)
T COG1125           8 SKRYGNKKAVDDVNLTIEEG-------EFLVLIGPSGSGKTTTLKMI   47 (309)
T ss_pred             ehhcCCceeeeeeeEEecCC-------eEEEEECCCCCcHHHHHHHH
Confidence            34456889999999999999       99999999999999999999

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.29  E-value=8.1e-07  Score=77.96  Aligned_cols=47  Identities=17%  Similarity=0.244  Sum_probs=38.9

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++         .+ .+...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        38 ~~l~i~nl---------s~-~~~~vL~~vs~~i~~G-------e~~~liG~NGsGKSTLl~~I~   84 (282)
T cd03291          38 NNLFFSNL---------CL-VGAPVLKNINLKIEKG-------EMLAITGSTGSGKTSLLMLIL   84 (282)
T ss_pred             CeEEEEEE---------EE-ecccceeeeeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45777665         12 2456899999999999       999999999999999999984

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.29  E-value=5.1e-07  Score=77.22  Aligned_cols=43  Identities=28%  Similarity=0.504  Sum_probs=38.8

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      .+.++....+++++|.+++|       +++++.||||+||||++|+| +++
T Consensus         9 tK~Fg~k~av~~isf~v~~G-------~i~GllG~NGAGKTTtfRmILgll   52 (300)
T COG4152           9 TKSFGDKKAVDNISFEVPPG-------EIFGLLGPNGAGKTTTFRMILGLL   52 (300)
T ss_pred             hhccCceeeecceeeeecCC-------eEEEeecCCCCCccchHHHHhccC
Confidence            45678889999999999999       99999999999999999998 544

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.29  E-value=1.2e-06  Score=78.40  Aligned_cols=50  Identities=16%  Similarity=0.208  Sum_probs=40.4

Q ss_pred             CceEEeccccCcccCCCceeeC----CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIP----NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp----~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++.++        ...++    ....+++++|++++|       ++++|+|+||+|||||+|+++
T Consensus        10 ~~~L~i~~l--------~~~~~~~~~~~~~l~~vsl~i~~G-------e~~~ivG~sGsGKSTL~~~l~   63 (330)
T PRK09473         10 DALLDVKDL--------RVTFSTPDGDVTAVNDLNFSLRAG-------ETLGIVGESGSGKSQTAFALM   63 (330)
T ss_pred             CceEEEeCe--------EEEEecCCCCEEEEeeeEEEEcCC-------CEEEEECCCCchHHHHHHHHH
Confidence            466777765        33332    235899999999999       999999999999999999984

>PLN03073 ABC transporter F family; Provisional

Probab=98.29  E-value=8.4e-07  Score=87.07  Aligned_cols=49  Identities=22%  Similarity=0.360  Sum_probs=40.4

Q ss_pred             ceEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++++.++        ...+++ ...+++++|++.+|       ++++|+||||+|||||||+++
T Consensus       507 ~~L~~~~l--------s~~y~~~~~il~~vsl~i~~G-------e~i~LvG~NGsGKSTLLk~L~  556 (718)
T PLN03073        507 PIISFSDA--------SFGYPGGPLLFKNLNFGIDLD-------SRIAMVGPNGIGKSTILKLIS  556 (718)
T ss_pred             ceEEEEee--------EEEeCCCCeeEeccEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            56777665        333443 46899999999999       999999999999999999984

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.28  E-value=9.5e-07  Score=77.24  Aligned_cols=36  Identities=22%  Similarity=0.265  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++|++++|       ++++|+||||+|||||||++.-
T Consensus        17 ~~~l~~isl~I~~G-------e~~~IvG~nGsGKSTLl~~L~g   52 (275)
T cd03289          17 NAVLENISFSISPG-------QRVGLLGRTGSGKSTLLSAFLR   52 (275)
T ss_pred             CcceeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhh
Confidence            45899999999999       9999999999999999999943

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.28  E-value=1e-06  Score=85.18  Aligned_cols=49  Identities=14%  Similarity=0.143  Sum_probs=40.1

Q ss_pred             ceEEeccccCcccCCCceeeC----CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIP----NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp----~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++++++        ...++    ....+++++|++.+|       ++++|+||||+|||||||+++
T Consensus        11 ~~l~v~~l--------~~~y~~~~~~~~~l~~is~~v~~G-------e~~~lvG~nGsGKSTLl~~l~   63 (623)
T PRK10261         11 DVLAVENL--------NIAFMQEQQKIAAVRNLSFSLQRG-------ETLAIVGESGSGKSVTALALM   63 (623)
T ss_pred             ceEEEece--------EEEecCCCCceeEEEeeEEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence            56777765        33333    236899999999999       999999999999999999994

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.27  E-value=9.1e-07  Score=83.43  Aligned_cols=34  Identities=21%  Similarity=0.201  Sum_probs=31.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++
T Consensus       277 ~~l~~isl~i~~G-------e~~~l~G~NGsGKSTLlk~i~  310 (510)
T PRK09700        277 KKVRDISFSVCRG-------EILGFAGLVGSGRTELMNCLF  310 (510)
T ss_pred             CcccceeEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            3789999999999       999999999999999999994

>KOG0062|consensus

Probab=98.26  E-value=1.3e-07  Score=87.79  Aligned_cols=152  Identities=18%  Similarity=0.213  Sum_probs=96.5

Q ss_pred             ccccccccceeeEeec--cEEEEEeecccccCCCcEEEEeEEeccc--CCCCchhhHHHHhhhhhh----hhhhhc----
Q psy13262         42 DTDADMWRESAFFLRK--TRYLCVSKTESLFQIDYIVENICIINEK--ETPPDGFCLIARTLDSDQ----GQICER----  109 (229)
Q Consensus        42 d~~a~~~qe~~~~~rk--gRyv~~vk~~~~~~~~giV~di~~l~~~--~~~P~~y~~l~~~~~s~q----t~l~e~----  109 (229)
                      |..+-.|.|+  |+..  ...+++++++.+  ++.|++||.+.+..  +.+-++|+....+..+..    ..|-..    
T Consensus       230 Dv~av~WLe~--yL~t~~~T~liVSHDr~F--Ln~V~tdIIH~~~~kL~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R  305 (582)
T KOG0062|consen  230 DVVAVAWLEN--YLQTWKITSLIVSHDRNF--LNTVCTDIIHLENLKLDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYR  305 (582)
T ss_pred             hhHHHHHHHH--HHhhCCceEEEEeccHHH--HHHHHHHHHHHhhhhhhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHH
Confidence            3457889997  5554  788888888887  89999999999877  777888887666544322    222111    


Q ss_pred             ---ceeeeec--ccccccchhhhhhHHHHHHhCCCccceEec-----------CCCCCceEEeccccCcccCCCceeeCC
Q psy13262        110 ---GGVVDYK--PQQSNNTIFSQRNILKDMYQQGVCVPTFLG-----------LEEPHPYISALESLYPCATGDQTYIPN  173 (229)
Q Consensus       110 ---~~~v~l~--~l~~~~~~~~~~d~l~~~~~~~~~~P~~~~-----------~~~~~~~i~~~~~~hpll~~~~~~vp~  173 (229)
                         +.++...  +.+++..+++++.+|.   +.+.-+|...+           +...||.+.+..+       ...|.|+
T Consensus       306 ~h~q~fid~FrYna~ra~svqSRIk~L~---kl~~lk~~~~~~~~~~~fP~~~e~~~~p~l~i~~V-------~f~y~p~  375 (582)
T KOG0062|consen  306 AHLQVFIDKFRYNAARASSVQSRIKMLG---KLPALKSTLIEVLIGFLFPTEGEVLSPPNLRISYV-------AFEYTPS  375 (582)
T ss_pred             HHHHHHHHHhccCcccchhHHHHHHHhc---cCCCCCccceecccceecCCCCCcCCCCeeEEEee-------eccCCCc
Confidence               2222111  2233444555555433   33333333322           1123566655544       2456777


Q ss_pred             e-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 S-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      + ..+..++++++..       .++.++|+||.||||+||.+
T Consensus       376 ~y~~~~~~~~d~e~~-------sRi~~vg~ng~gkst~lKi~  410 (582)
T KOG0062|consen  376 EYQWRKQLGLDRESD-------SRISRVGENGDGKSTLLKIL  410 (582)
T ss_pred             chhhhhccCCccchh-------hhhheeccCchhHHHHHHHH
Confidence            7 5667888887777       89999999999999999987

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.25  E-value=1.3e-06  Score=84.59  Aligned_cols=34  Identities=32%  Similarity=0.345  Sum_probs=32.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++
T Consensus       338 ~~l~~vs~~i~~G-------e~~~lvG~nGsGKSTLlk~i~  371 (623)
T PRK10261        338 HAVEKVSFDLWPG-------ETLSLVGESGSGKSTTGRALL  371 (623)
T ss_pred             EEEeeeEeEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            5899999999999       999999999999999999984

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.23  E-value=1.5e-06  Score=81.31  Aligned_cols=50  Identities=26%  Similarity=0.312  Sum_probs=44.3

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++++.        .+.+|.-..|++++|++.+|       ++.+|.|-||+|||||+|.++
T Consensus         6 ~~ll~~~~i--------~K~FggV~AL~~v~l~v~~G-------EV~aL~GeNGAGKSTLmKiLs   55 (500)
T COG1129           6 PPLLELRGI--------SKSFGGVKALDGVSLTVRPG-------EVHALLGENGAGKSTLMKILS   55 (500)
T ss_pred             cceeeeecc--------eEEcCCceeeccceeEEeCc-------eEEEEecCCCCCHHHHHHHHh
Confidence            357777766        66778889999999999999       999999999999999999984

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=1.7e-06  Score=77.49  Aligned_cols=50  Identities=22%  Similarity=0.281  Sum_probs=39.9

Q ss_pred             ceEEeccccCcccCCCceeeC--CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIP--NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp--~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.+.++        ...++  ....|++++|++.+|       ++++|+||||+||||||++++-
T Consensus        79 ~~i~~~nl--------s~~y~~~~~~~L~~is~~I~~G-------e~v~IvG~~GsGKSTLl~~L~g  130 (329)
T PRK14257         79 NVFEIRNF--------NFWYMNRTKHVLHDLNLDIKRN-------KVTAFIGPSGCGKSTFLRNLNQ  130 (329)
T ss_pred             ceEEEEee--------EEEecCCCceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            46667665        22232  346899999999999       9999999999999999999843

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.22  E-value=1e-06  Score=80.96  Aligned_cols=37  Identities=27%  Similarity=0.380  Sum_probs=33.4

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .....+++++|++++|       ++++|+||||+|||||||+++
T Consensus        39 ~~~~~L~~isl~i~~G-------ei~~LvG~NGsGKSTLLr~I~   75 (400)
T PRK10070         39 GLSLGVKDASLAIEEG-------EIFVIMGLSGSGKSTMVRLLN   75 (400)
T ss_pred             CCeEEEEeEEEEEcCC-------CEEEEECCCCchHHHHHHHHH
Confidence            4445789999999999       999999999999999999994

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.21  E-value=1.2e-06  Score=75.21  Aligned_cols=35  Identities=23%  Similarity=0.319  Sum_probs=27.0

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++.|.-.++++.+|       ++++|+||||+|||||||+++
T Consensus        12 ~~~l~~~~~~i~~G-------e~~~i~G~NGsGKSTLlk~L~   46 (246)
T cd03237          12 EFTLEVEGGSISES-------EVIGILGPNGIGKTTFIKMLA   46 (246)
T ss_pred             cEEEEEecCCcCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            34444444445567       999999999999999999994

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.20  E-value=1.4e-06  Score=76.69  Aligned_cols=40  Identities=28%  Similarity=0.439  Sum_probs=34.0

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++.-..+.+++++++.|       +.++|+||||+||||+||+|+
T Consensus        10 ~~~~~~~a~~di~l~i~~G-------e~vaLlGpSGaGKsTlLRiIA   49 (345)
T COG1118          10 KRFGAFGALDDISLDIKSG-------ELVALLGPSGAGKSTLLRIIA   49 (345)
T ss_pred             hhcccccccccceeeecCC-------cEEEEECCCCCcHHHHHHHHh
Confidence            3345555667899999999       999999999999999999994

>KOG0057|consensus

Probab=98.19  E-value=1.7e-06  Score=80.93  Aligned_cols=46  Identities=24%  Similarity=0.290  Sum_probs=38.8

Q ss_pred             EEeccccCcccCCCceeeCCee-EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        154 ISALESLYPCATGDQTYIPNST-VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       154 i~~~~~~hpll~~~~~~vp~~~-~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      |++.++        .-+++++. +|++++|++..|       +.++|+|+|||||||+||++
T Consensus       352 I~F~dV--------~f~y~~k~~iL~gvsf~I~kG-------ekVaIvG~nGsGKSTilr~L  398 (591)
T KOG0057|consen  352 IEFDDV--------HFSYGPKRKVLKGVSFTIPKG-------EKVAIVGSNGSGKSTILRLL  398 (591)
T ss_pred             EEEEee--------EEEeCCCCceecceeEEecCC-------CEEEEECCCCCCHHHHHHHH
Confidence            666665        33444554 999999999999       99999999999999999987

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.19  E-value=1.4e-06  Score=79.59  Aligned_cols=39  Identities=23%  Similarity=0.354  Sum_probs=35.1

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++....+++++|++++|       ++++|+||||+|||||||+++
T Consensus        33 ~~g~~~~l~~vsf~i~~G-------ei~~I~G~nGsGKSTLlr~L~   71 (382)
T TIGR03415        33 ETGLVVGVANASLDIEEG-------EICVLMGLSGSGKSSLLRAVN   71 (382)
T ss_pred             hhCCEEEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            346667899999999999       999999999999999999994

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.19  E-value=1.3e-06  Score=75.47  Aligned_cols=35  Identities=40%  Similarity=0.393  Sum_probs=30.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++++++ +++|       ++++|+||||+|||||||+++.
T Consensus        14 ~~~l~~i~~-i~~G-------e~~~IvG~nGsGKSTLlk~l~G   48 (255)
T cd03236          14 SFKLHRLPV-PREG-------QVLGLVGPNGIGKSTALKILAG   48 (255)
T ss_pred             chhhhcCCC-CCCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            357888884 8888       9999999999999999999943

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.19  E-value=1.9e-06  Score=81.38  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.+++|++.+|       ++++|+||||+|||||||+++.
T Consensus        38 ~IL~nVSfsI~~G-------EivgIiGpNGSGKSTLLkiLaG   72 (549)
T PRK13545         38 YALNNISFEVPEG-------EIVGIIGLNGSGKSTLSNLIAG   72 (549)
T ss_pred             eEEeeeEEEEeCC-------CEEEEEcCCCCCHHHHHHHHhC
Confidence            5899999999999       9999999999999999999853

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.19  E-value=1.8e-06  Score=73.64  Aligned_cols=42  Identities=24%  Similarity=0.309  Sum_probs=35.9

Q ss_pred             ceeeCCee----EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNST----VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~----~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++...    .++++||++.+|       ++++|+|+.||||||+.|+++.
T Consensus        10 ~~~y~~~~~~~~~l~~VS~~i~~G-------e~lgivGeSGsGKSTL~r~l~G   55 (252)
T COG1124          10 SIVYGGGKFAFHALNNVSLEIERG-------ETLGIVGESGSGKSTLARLLAG   55 (252)
T ss_pred             EEEecCCcchhhhhcceeEEecCC-------CEEEEEcCCCCCHHHHHHHHhc
Confidence            34455555    899999999999       9999999999999999999843

>PRK13409 putative ATPase RIL; Provisional

Probab=98.16  E-value=2.7e-06  Score=81.85  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++.++|++++|       ++++|+||||+|||||||+++
T Consensus       353 ~~l~~~s~~i~~G-------eiv~l~G~NGsGKSTLlk~L~  386 (590)
T PRK13409        353 FSLEVEGGEIYEG-------EVIGIVGPNGIGKTTFAKLLA  386 (590)
T ss_pred             EEEEecceEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4588899999999       999999999999999999984

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.16  E-value=2.2e-06  Score=64.59  Aligned_cols=34  Identities=26%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++++++..+       +.++|.||+|+|||||++++.
T Consensus         3 ~aL~~vsl~i~~g-------e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           3 TSLHGVLVDVYGK-------VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEeeEEEEcCC-------EEEEEEcCCCCCHHHHHHHhh
Confidence            5677888888888       999999999999999999964

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.15  E-value=2e-06  Score=80.73  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=31.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|+++.|       ++++|+||||+|||||||+++
T Consensus       262 ~~l~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~  295 (491)
T PRK10982        262 PSIRDVSFDLHKG-------EILGIAGLVGAKRTDIVETLF  295 (491)
T ss_pred             cccceeeEEEeCC-------cEEEEecCCCCCHHHHHHHHc
Confidence            4789999999999       999999999999999999984

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.14  E-value=2.7e-06  Score=82.84  Aligned_cols=40  Identities=40%  Similarity=0.580  Sum_probs=35.1

Q ss_pred             eeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+| +...+++++|++++|       ++++|+||||+|||||+|+++-
T Consensus       460 ~~~~~~~il~~isl~i~~G-------e~~~IvG~nGsGKSTLl~lL~G  500 (659)
T TIGR00954       460 VTPNGDVLIESLSFEVPSG-------NHLLICGPNGCGKSSLFRILGE  500 (659)
T ss_pred             ECCCCCeeeecceEEECCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            344 347899999999999       9999999999999999999843

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.5e-06  Score=81.77  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=31.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++.+|       ++++|+||||+|||||||+++
T Consensus       267 ~~l~~isl~i~~G-------e~~~iiG~NGsGKSTLlk~l~  300 (501)
T PRK11288        267 GLREPISFSVRAG-------EIVGLFGLVGAGRSELMKLLY  300 (501)
T ss_pred             CcccceeEEEeCC-------cEEEEEcCCCCCHHHHHHHHc
Confidence            3689999999999       999999999999999999983

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.12  E-value=2.4e-06  Score=80.77  Aligned_cols=35  Identities=29%  Similarity=0.447  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +..++++++++++|       +.++|+||+|+||||++|.+.
T Consensus       348 ~~vL~~isl~i~~G-------~~vaIvG~SGsGKSTLl~lL~  382 (529)
T TIGR02868       348 PPVLDGVSLDLPPG-------ERVAILGPSGSGKSTLLMLLT  382 (529)
T ss_pred             CceeecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999       999999999999999999883

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.11  E-value=2.5e-06  Score=77.40  Aligned_cols=50  Identities=28%  Similarity=0.383  Sum_probs=41.6

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GL  216 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l  216 (229)
                      -+++++.|       ..|-+|.+.++++++++++|       +.+-|+|.|||||||+++.+ ||
T Consensus       322 ~lelrnvr-------fay~~~~FhvgPiNl~ikrG-------elvFliG~NGsGKST~~~LLtGL  372 (546)
T COG4615         322 TLELRNVR-------FAYQDNAFHVGPINLTIKRG-------ELVFLIGGNGSGKSTLAMLLTGL  372 (546)
T ss_pred             ceeeeeee-------eccCcccceecceeeEEecC-------cEEEEECCCCCcHHHHHHHHhcc
Confidence            35666652       34567779999999999999       99999999999999999987 44

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.09  E-value=2.2e-06  Score=80.92  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++|++++|       ++++|+||||+|||||||+++
T Consensus       278 ~l~~isl~i~~G-------e~~~l~G~NGsGKSTLl~~i~  310 (510)
T PRK15439        278 GFRNISLEVRAG-------EILGLAGVVGAGRTELAETLY  310 (510)
T ss_pred             CccceeEEEcCC-------cEEEEECCCCCCHHHHHHHHc
Confidence            478999999999       999999999999999999984

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.08  E-value=2.6e-06  Score=80.23  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++|++.+|       ++++|+||||+|||||||+++
T Consensus       267 ~l~~vsl~i~~G-------e~~~liG~NGsGKSTLl~~l~  299 (501)
T PRK10762        267 GVNDVSFTLRKG-------EILGVSGLMGAGRTELMKVLY  299 (501)
T ss_pred             CcccceEEEcCC-------cEEEEecCCCCCHHHHHHHHh
Confidence            478999999999       999999999999999999984

>PRK13409 putative ATPase RIL; Provisional

Probab=98.07  E-value=3.4e-06  Score=81.15  Aligned_cols=39  Identities=28%  Similarity=0.256  Sum_probs=34.0

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|-+|.+.|.+++ .+++|       ++++|+||||+|||||||.++
T Consensus        82 ~yg~~~~~L~~l~-~i~~G-------ev~gLvG~NGaGKSTLlkiL~  120 (590)
T PRK13409         82 RYGVNGFKLYGLP-IPKEG-------KVTGILGPNGIGKTTAVKILS  120 (590)
T ss_pred             EecCCceeEecCC-cCCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            3445568999999 88888       999999999999999999994

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.06  E-value=1.7e-06  Score=75.04  Aligned_cols=35  Identities=29%  Similarity=0.517  Sum_probs=31.6

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      ...++||++.+|       +++++.||||+||||+||++ |++
T Consensus        39 AVqdisf~IP~G-------~ivgflGaNGAGKSTtLKmLTGll   74 (325)
T COG4586          39 AVQDISFEIPKG-------EIVGFLGANGAGKSTTLKMLTGLL   74 (325)
T ss_pred             hhheeeeecCCC-------cEEEEEcCCCCcchhhHHHHhCcc
Confidence            667899999999       99999999999999999999 544

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.05  E-value=4.1e-06  Score=80.24  Aligned_cols=39  Identities=23%  Similarity=0.358  Sum_probs=34.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++...++++++++++|       +.++|+||+|+||||+++.+.
T Consensus       359 ~~~~~~vL~~i~l~i~~G-------~~vaIvG~SGsGKSTL~~lL~  397 (588)
T PRK11174        359 SPDGKTLAGPLNFTLPAG-------QRIALVGPSGAGKTSLLNALL  397 (588)
T ss_pred             ccCCCeeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            334567899999999999       999999999999999999883

>PLN03211 ABC transporter G-25; Provisional

Probab=98.05  E-value=3.8e-06  Score=81.84  Aligned_cols=38  Identities=29%  Similarity=0.509  Sum_probs=34.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++...+++++++++++|       ++++|.||||+|||||||+++
T Consensus        78 ~~~~~iL~~vs~~i~~G-------e~~aI~GpnGaGKSTLL~iLa  115 (659)
T PLN03211         78 IQERTILNGVTGMASPG-------EILAVLGPSGSGKSTLLNALA  115 (659)
T ss_pred             CCCCeeeeCCEEEEECC-------EEEEEECCCCCCHHHHHHHHh
Confidence            45567999999999999       999999999999999999985

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.03  E-value=5.6e-06  Score=78.77  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=34.0

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +|+ ...++++++++++|       +.++|+||||+|||||+|.++
T Consensus       332 y~~~~~~l~~i~~~i~~G-------~~~aivG~sGsGKSTL~~ll~  370 (547)
T PRK10522        332 YQDNGFSVGPINLTIKRG-------ELLFLIGGNGSGKSTLAMLLT  370 (547)
T ss_pred             eCCCCeEEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            444 45899999999999       999999999999999999984

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.01  E-value=5.9e-06  Score=79.02  Aligned_cols=35  Identities=23%  Similarity=0.331  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||+|.++
T Consensus       356 ~~il~~i~l~i~~G-------~~~aIvG~sGsGKSTLl~ll~  390 (582)
T PRK11176        356 VPALRNINFKIPAG-------KTVALVGRSGSGKSTIANLLT  390 (582)
T ss_pred             CccccCceEEeCCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999       999999999999999999983

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=97.99  E-value=6e-06  Score=80.84  Aligned_cols=48  Identities=23%  Similarity=0.350  Sum_probs=38.9

Q ss_pred             eEEeccccCcccCCCceeeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      -++++++       +..|-+++ ..+.++++++++|       +.++|+|+||||||||+|.+
T Consensus       471 ~I~~~nv-------sf~y~~~~~~vL~~isL~I~~G-------e~vaIvG~SGsGKSTL~KLL  519 (709)
T COG2274         471 EIEFENV-------SFRYGPDDPPVLEDLSLEIPPG-------EKVAIVGRSGSGKSTLLKLL  519 (709)
T ss_pred             eEEEEEE-------EEEeCCCCcchhhceeEEeCCC-------CEEEEECCCCCCHHHHHHHH
Confidence            4566554       23444543 5999999999999       99999999999999999987

>KOG0060|consensus

Probab=97.99  E-value=8.5e-06  Score=76.85  Aligned_cols=51  Identities=33%  Similarity=0.446  Sum_probs=41.3

Q ss_pred             ceEEeccccCcccCCCceeeCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..|+++++        .-..|+  ++.++++++.|..|       +.+.||||||+|||.|||.+|-+
T Consensus       432 n~i~~e~v--------~l~tPt~g~~lie~Ls~~V~~g-------~~LLItG~sG~GKtSLlRvlggL  484 (659)
T KOG0060|consen  432 NAIEFEEV--------SLSTPTNGDLLIENLSLEVPSG-------QNLLITGPSGCGKTSLLRVLGGL  484 (659)
T ss_pred             ceEEeeee--------eecCCCCCceeeeeeeeEecCC-------CeEEEECCCCCchhHHHHHHhcc
Confidence            56777654        223344  67888999999999       99999999999999999999643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=97.99  E-value=6.9e-06  Score=77.71  Aligned_cols=34  Identities=29%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++++++++|       +.++|+||||+|||||+|.++
T Consensus       336 ~il~~i~l~i~~G-------~~~~ivG~sGsGKSTL~~ll~  369 (529)
T TIGR02857       336 PALRPVSFTVPPG-------ERVALVGPSGAGKSTLLNLLL  369 (529)
T ss_pred             ccccceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999       999999999999999999983

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.98  E-value=9.2e-06  Score=78.99  Aligned_cols=35  Identities=31%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        22 ~il~~vs~~i~~G-------e~~~l~G~nGsGKSTLl~~i~G   56 (648)
T PRK10535         22 EVLKGISLDIYAG-------EMVAIVGASGSGKSTLMNILGC   56 (648)
T ss_pred             eeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999       9999999999999999999853

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=97.98  E-value=7.4e-06  Score=80.42  Aligned_cols=34  Identities=35%  Similarity=0.452  Sum_probs=32.5

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...++++++++++|       +.++|+||||+||||++|.+
T Consensus       494 ~~vL~~isl~i~~G-------e~vaIvG~SGsGKSTLl~lL  527 (711)
T TIGR00958       494 VPVLKGLTFTLHPG-------EVVALVGPSGSGKSTVAALL  527 (711)
T ss_pred             CccccCceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999       99999999999999999998

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=97.98  E-value=7.4e-06  Score=79.99  Aligned_cols=35  Identities=29%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+|+||+|||||+|.++
T Consensus       466 ~~vL~~isl~i~~G-------e~vaIvG~sGsGKSTLlklL~  500 (686)
T TIGR03797       466 PLILDDVSLQIEPG-------EFVAIVGPSGSGKSTLLRLLL  500 (686)
T ss_pred             ccceeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999       999999999999999999883

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=97.98  E-value=6.3e-06  Score=80.71  Aligned_cols=36  Identities=19%  Similarity=0.261  Sum_probs=33.2

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +...++++++++++|       +.++|+||||+|||||+|+++
T Consensus       486 ~~~iL~~isl~i~~G-------~~vaIvG~SGsGKSTLlklL~  521 (708)
T TIGR01193       486 GSNILSDISLTIKMN-------SKTTIVGMSGSGKSTLAKLLV  521 (708)
T ss_pred             CCcceeceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999       999999999999999999983

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=97.97  E-value=1.7e-05  Score=75.39  Aligned_cols=35  Identities=26%  Similarity=0.403  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||+|.++
T Consensus       331 ~~~l~~~~~~i~~G-------~~~~ivG~sGsGKSTL~~ll~  365 (544)
T TIGR01842       331 KPTLRGISFRLQAG-------EALAIIGPSGSGKSTLARLIV  365 (544)
T ss_pred             ccccccceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999       999999999999999999983

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=97.97  E-value=7.2e-06  Score=78.75  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=33.8

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++ +..+++++|++++|       +.++|+||||+|||||+|+++
T Consensus       344 y~~~~~~l~~i~~~i~~G-------~~~~ivG~sGsGKSTL~~ll~  382 (585)
T TIGR01192       344 FANSSQGVFDVSFEAKAG-------QTVAIVGPTGAGKTTLINLLQ  382 (585)
T ss_pred             CCCCCccccceeEEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            444 45799999999999       999999999999999999883

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=97.96  E-value=8.8e-06  Score=78.03  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=34.0

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +|+ ...++++++++++|       +.++|+|+||+|||||+|.+.
T Consensus       344 y~~~~~iL~~inl~i~~G-------~~v~IvG~sGsGKSTLl~lL~  382 (588)
T PRK13657        344 YDNSRQGVEDVSFEAKPG-------QTVAIVGPTGAGKSTLINLLQ  382 (588)
T ss_pred             eCCCCceecceeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            344 46899999999999       999999999999999999883

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=97.96  E-value=8.5e-06  Score=78.06  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++++|       +.++|+||||+|||||+|.++
T Consensus       354 ~il~~i~~~i~~G-------~~~aivG~sGsGKSTL~~ll~  387 (574)
T PRK11160        354 PVLKGLSLQIKAG-------EKVALLGRTGCGKSTLLQLLT  387 (574)
T ss_pred             cceecceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999       999999999999999999984

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=97.96  E-value=8.6e-06  Score=77.60  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+|+||+|||||+|.++
T Consensus       345 ~~il~~inl~i~~G-------~~v~IvG~sGsGKSTLl~lL~  379 (571)
T TIGR02203       345 RPALDSISLVIEPG-------ETVALVGRSGSGKSTLVNLIP  379 (571)
T ss_pred             CccccCeeEEecCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999       999999999999999999983

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.96  E-value=8.3e-06  Score=78.03  Aligned_cols=35  Identities=23%  Similarity=0.414  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||+|+++
T Consensus       328 ~~~l~~i~~~i~~G-------~~~~ivG~sGsGKSTLl~ll~  362 (569)
T PRK10789        328 HPALENVNFTLKPG-------QMLGICGPTGSGKSTLLSLIQ  362 (569)
T ss_pred             CccccCeeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45899999999999       999999999999999999984

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=97.96  E-value=8.7e-06  Score=77.69  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+|+||+|||||+|++.
T Consensus       353 ~~iL~~inl~i~~G-------e~i~IvG~sGsGKSTLlklL~  387 (576)
T TIGR02204       353 QPALDGLNLTVRPG-------ETVALVGPSGAGKSTLFQLLL  387 (576)
T ss_pred             CccccceeEEecCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            46899999999999       999999999999999999983

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=97.95  E-value=8.2e-06  Score=78.25  Aligned_cols=34  Identities=29%  Similarity=0.304  Sum_probs=32.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+++++++++++|       +.++|+|+||+|||||+|.+
T Consensus       354 ~~il~~i~l~i~~G-------e~iaIvG~SGsGKSTLl~lL  387 (592)
T PRK10790        354 NLVLQNINLSVPSR-------GFVALVGHTGSGKSTLASLL  387 (592)
T ss_pred             CceeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            45899999999999       99999999999999999998

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=97.95  E-value=1.1e-05  Score=77.05  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=32.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++++++++|       +.++|+||||+||||++++++
T Consensus       356 ~~l~~vs~~i~~G-------~~~aivG~sGsGKSTl~~ll~  389 (555)
T TIGR01194       356 FALGPIDLRIAQG-------DIVFIVGENGCGKSTLAKLFC  389 (555)
T ss_pred             ceeccceEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            5899999999999       999999999999999999984

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.93  E-value=1.4e-05  Score=54.35  Aligned_cols=23  Identities=43%  Similarity=0.703  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+|+||||+||||+|..+..+
T Consensus        24 ~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   24 DVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999987543

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.93  E-value=9.6e-06  Score=79.45  Aligned_cols=35  Identities=23%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||+|.++
T Consensus       492 ~~vL~~isl~i~~G-------e~vaIvG~sGsGKSTLlklL~  526 (710)
T TIGR03796       492 PPLIENFSLTLQPG-------QRVALVGGSGSGKSTIAKLVA  526 (710)
T ss_pred             CCcccceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999       999999999999999999983

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=97.92  E-value=1.1e-05  Score=78.80  Aligned_cols=35  Identities=20%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||+|+++
T Consensus       478 ~~vL~~i~l~i~~G-------~~iaIvG~sGsGKSTLlklL~  512 (694)
T TIGR03375       478 TPALDNVSLTIRPG-------EKVAIIGRIGSGKSTLLKLLL  512 (694)
T ss_pred             ccceeeeeEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999       999999999999999999983

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.89  E-value=1.2e-05  Score=65.56  Aligned_cols=33  Identities=36%  Similarity=0.633  Sum_probs=30.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+.+++|+++.|       +|++|.||.|+||||+||++
T Consensus        25 pV~~~vslsV~aG-------ECvvL~G~SG~GKStllr~L   57 (235)
T COG4778          25 PVLRNVSLSVNAG-------ECVVLHGPSGSGKSTLLRSL   57 (235)
T ss_pred             eeeeceeEEecCc-------cEEEeeCCCCCcHHHHHHHH
Confidence            3678899999999       99999999999999999987

>KOG2355|consensus

Probab=97.88  E-value=1.3e-05  Score=67.18  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=34.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .|-..|+++.++++++..|       .+..++|+||+||||+||.++-
T Consensus        22 ~y~~~dP~~~Dfnldlp~g-------sRcLlVGaNGaGKtTlLKiLsG   62 (291)
T KOG2355|consen   22 KYKVSDPIFFDFNLDLPAG-------SRCLLVGANGAGKTTLLKILSG   62 (291)
T ss_pred             ecccCCceEEEEeeccCCC-------ceEEEEecCCCchhhhHHHhcC
Confidence            4445567788888888888       8999999999999999999853

>KOG0062|consensus

Probab=97.86  E-value=8.6e-06  Score=75.89  Aligned_cols=42  Identities=21%  Similarity=0.259  Sum_probs=38.3

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +-+|+....|.+-++++..|       ++.+|+|+||+|||||||+|+-
T Consensus        87 dLa~G~k~LL~~a~L~L~~G-------rRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   87 DLAYGGKILLNKANLTLSRG-------RRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             eeeecchhhhcCCceeeecc-------cccceeCCCCCcHHHHHHHHHh
Confidence            34688889999999999999       9999999999999999999975

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.86  E-value=1.4e-05  Score=65.47  Aligned_cols=50  Identities=20%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             CceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|+++..++        .++|+...-..+++|++.+|       ++++|+|..|+||||||+.+.
T Consensus         4 ~PLL~V~~l--------sk~Yg~~~gc~~vsF~l~PG-------eVLgiVGESGSGKtTLL~~is   53 (258)
T COG4107           4 KPLLSVSGL--------SKLYGPGKGCRDVSFDLYPG-------EVLGIVGESGSGKTTLLKCIS   53 (258)
T ss_pred             Ccceeehhh--------hhhhCCCcCccccceeecCC-------cEEEEEecCCCcHHhHHHHHh
Confidence            356666554        56777788899999999999       999999999999999999874

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.86  E-value=2e-05  Score=84.78  Aligned_cols=40  Identities=28%  Similarity=0.334  Sum_probs=35.2

Q ss_pred             eeeCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++  ...+++++|.+++|       ++++|.||||+||||+||+++
T Consensus      1945 K~Y~~~~~~aL~~ISf~I~~G-------Ei~gLLG~NGAGKTTLlkmL~ 1986 (2272)
T TIGR01257      1945 KVYSGTSSPAVDRLCVGVRPG-------ECFGLLGVNGAGKTTTFKMLT 1986 (2272)
T ss_pred             EEECCCCceEEEeeEEEEcCC-------cEEEEECCCCCcHHHHHHHHh
Confidence            33443  57999999999999       999999999999999999984

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.84  E-value=2.6e-05  Score=72.37  Aligned_cols=51  Identities=29%  Similarity=0.395  Sum_probs=43.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      +.+++++.        .+.+|.-...++++|+++.|       ++-+|.|-||+|||||||++ |+.
T Consensus         3 ~~l~~~~i--------tK~f~~~~And~V~l~v~~G-------eIHaLLGENGAGKSTLm~iL~G~~   54 (501)
T COG3845           3 PALEMRGI--------TKRFPGVVANDDVSLSVKKG-------EIHALLGENGAGKSTLMKILFGLY   54 (501)
T ss_pred             ceEEEecc--------EEEcCCEEecCceeeeecCC-------cEEEEeccCCCCHHHHHHHHhCcc
Confidence            45666655        66778888899999999999       99999999999999999998 543

>KOG0058|consensus

Probab=97.84  E-value=1.8e-05  Score=76.36  Aligned_cols=36  Identities=33%  Similarity=0.542  Sum_probs=32.2

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      |+..++++++|++++|       ++++|+||+||||||....+
T Consensus       479 p~~~Vlk~lsfti~pG-------e~vALVGPSGsGKSTiasLL  514 (716)
T KOG0058|consen  479 PDVPVLKNLSFTIRPG-------EVVALVGPSGSGKSTIASLL  514 (716)
T ss_pred             CCchhhcCceeeeCCC-------CEEEEECCCCCCHHHHHHHH
Confidence            4456899999999999       99999999999999997765

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.82  E-value=2e-05  Score=75.23  Aligned_cols=46  Identities=26%  Similarity=0.397  Sum_probs=39.2

Q ss_pred             EEeccccCcccCCCceeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        154 ISALESLYPCATGDQTYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       154 i~~~~~~hpll~~~~~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ++++++        .-.++ ++..+++++|++++|       +.++|+||+||||||+++.+
T Consensus       329 I~f~~v--------sf~y~~~~~vl~~is~~i~~G-------e~vaiVG~sGsGKSTl~~LL  375 (567)
T COG1132         329 IEFENV--------SFSYPGKKPVLKDISFSIEPG-------EKVAIVGPSGSGKSTLIKLL  375 (567)
T ss_pred             EEEEEE--------EEEcCCCCccccCceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            666655        33355 578999999999999       99999999999999999987

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.82  E-value=2.4e-05  Score=69.03  Aligned_cols=36  Identities=25%  Similarity=0.437  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      -..++++++.|++|       ++++|.|.+|+|||||+|++-+
T Consensus        19 ~~al~~vsL~I~~G-------eI~GIIG~SGAGKSTLiR~iN~   54 (339)
T COG1135          19 VTALDDVSLEIPKG-------EIFGIIGYSGAGKSTLLRLINL   54 (339)
T ss_pred             eeeeccceEEEcCC-------cEEEEEcCCCCcHHHHHHHHhc
Confidence            46899999999999       9999999999999999999844

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.81  E-value=1.1e-05  Score=67.19  Aligned_cols=39  Identities=26%  Similarity=0.404  Sum_probs=34.1

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.+..-..++++||.+.+|       +.=+|.||||+||||+|-.|
T Consensus        13 VsF~GF~Aln~ls~~v~~G-------elr~lIGpNGAGKTT~mD~I   51 (249)
T COG4674          13 VSFGGFKALNDLSFSVDPG-------ELRVLIGPNGAGKTTLMDVI   51 (249)
T ss_pred             EEEcceeeeeeeEEEecCC-------eEEEEECCCCCCceeeeeee
Confidence            3445667889999999999       99999999999999999876

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=97.80  E-value=2e-05  Score=77.15  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=32.5

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+|+||+|||||+|.++
T Consensus       470 ~~il~~i~l~i~~G-------~~vaivG~sGsGKSTL~~ll~  504 (694)
T TIGR01846       470 PEVLSNLNLDIKPG-------EFIGIVGPSGSGKSTLTKLLQ  504 (694)
T ss_pred             ccccccceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            35899999999999       999999999999999999984

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=5.1e-05  Score=71.71  Aligned_cols=37  Identities=24%  Similarity=0.460  Sum_probs=33.8

Q ss_pred             eCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        171 IPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       171 vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +|+. ..++++++++++|       +.++|+|++|+||||++..+
T Consensus       330 y~~g~~~l~~l~~t~~~g-------~~talvG~SGaGKSTLl~lL  367 (559)
T COG4988         330 YPDGKPALSDLNLTIKAG-------QLTALVGASGAGKSTLLNLL  367 (559)
T ss_pred             cCCCCcccCCceeEecCC-------cEEEEECCCCCCHHHHHHHH
Confidence            4554 8999999999999       99999999999999999988

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.79  E-value=3e-05  Score=83.44  Aligned_cols=36  Identities=19%  Similarity=0.260  Sum_probs=33.4

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ....++++++++.+|       ++++|.||||+|||||||+++
T Consensus       942 ~k~aL~~lsl~I~~G-------ei~aLLG~NGAGKSTLLkiLa  977 (2272)
T TIGR01257       942 GRPAVDRLNITFYEN-------QITAFLGHNGAGKTTTLSILT  977 (2272)
T ss_pred             CceEEEeeEEEEcCC-------cEEEEECCCCChHHHHHHHHh
Confidence            357899999999999       999999999999999999984

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=97.79  E-value=1.8e-05  Score=76.47  Aligned_cols=37  Identities=22%  Similarity=0.413  Sum_probs=33.6

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++++++.+++|       +.++|.||||+||||||++++.
T Consensus        37 ~~~iL~~vs~~i~~G-------e~~aI~G~sGsGKSTLL~~L~g   73 (617)
T TIGR00955        37 RKHLLKNVSGVAKPG-------ELLAVMGSSGAGKTTLMNALAF   73 (617)
T ss_pred             ccccccCCEEEEeCC-------eEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999       9999999999999999999853

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.78  E-value=3e-05  Score=65.25  Aligned_cols=22  Identities=32%  Similarity=0.526  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++++|.||||+||||+|+++.+
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~   47 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLF   47 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            6999999999999999999864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.77  E-value=3.1e-05  Score=62.80  Aligned_cols=44  Identities=27%  Similarity=0.456  Sum_probs=38.6

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..|++....+.+++++...|       +.+++.||.|+|||+|||++-|+-
T Consensus         9 n~~yg~~q~lfdi~l~~~~g-------etlvllgpsgagkssllr~lnlle   52 (242)
T COG4161           9 NCFYGAHQALFDITLDCPEG-------ETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             ccccccchheeeeeecCCCC-------CEEEEECCCCCchHHHHHHHHHHh
Confidence            45778888888888888888       999999999999999999998764

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.76  E-value=3.9e-05  Score=73.39  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=35.2

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++.++++++.+++|       +.+.|+||||+|||||+|+++-+
T Consensus       404 ~~~~ll~~l~~~v~~G-------~~llI~G~SG~GKTsLlRaiaGL  442 (604)
T COG4178         404 DGQTLLSELNFEVRPG-------ERLLITGESGAGKTSLLRALAGL  442 (604)
T ss_pred             CCCeeeccceeeeCCC-------CEEEEECCCCCCHHHHHHHHhcc
Confidence            3468999999999999       99999999999999999999643

>KOG0056|consensus

Probab=97.76  E-value=3.6e-05  Score=71.75  Aligned_cols=40  Identities=38%  Similarity=0.580  Sum_probs=37.2

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..|-|..+.+++++|++.+|       +.++|+||.|+||||.||.+
T Consensus       545 F~Y~p~k~vl~disF~v~pG-------ktvAlVG~SGaGKSTimRlL  584 (790)
T KOG0056|consen  545 FAYDPGKPVLSDISFTVQPG-------KTVALVGPSGAGKSTIMRLL  584 (790)
T ss_pred             EecCCCCceeecceEEecCC-------cEEEEECCCCCchhHHHHHH
Confidence            46678899999999999999       99999999999999999976

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.75  E-value=3.7e-05  Score=80.60  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=33.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+|+++++++++|       ++++|.||||+||||||++++-
T Consensus       776 ~~iL~~vs~~i~~G-------e~~aI~G~sGaGKSTLL~~Lag  811 (1394)
T TIGR00956       776 RVILNNVDGWVKPG-------TLTALMGASGAGKTTLLNVLAE  811 (1394)
T ss_pred             cEeeeCCEEEEECC-------EEEEEECCCCCCHHHHHHHHhC
Confidence            46899999999999       9999999999999999999853

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=3.1e-05  Score=72.59  Aligned_cols=49  Identities=18%  Similarity=0.257  Sum_probs=39.2

Q ss_pred             eEEeccccCcccCCCceeeCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++       +..|-.++ ..+++++|++++|       ++++|.|+.||||||+++++.
T Consensus       336 ~l~~~~v-------sF~y~~~~~~~L~~~~l~l~~G-------EkvAIlG~SGsGKSTllqLl~  385 (573)
T COG4987         336 ALELRNV-------SFTYPGQQTKALKNFNLTLAQG-------EKVAILGRSGSGKSTLLQLLA  385 (573)
T ss_pred             eeeeccc-------eeecCCCccchhhccceeecCC-------CeEEEECCCCCCHHHHHHHHH
Confidence            5666665       23333333 4999999999999       999999999999999999885

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.73  E-value=3.7e-05  Score=80.96  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=32.8

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++++++|++++|       ++++|+|||||||||++|++.-
T Consensus       399 ~vL~~isl~i~~G-------e~vaIvG~SGsGKSTLl~lL~g  433 (1466)
T PTZ00265        399 EIYKDLNFTLTEG-------KTYAFVGESGCGKSTILKLIER  433 (1466)
T ss_pred             ceeccceEEEcCC-------CEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999       9999999999999999999843

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.72  E-value=2.7e-05  Score=81.58  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=32.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+|+++++.+++|       ++++|.||||+|||||||+++.
T Consensus        74 ~~iL~~vs~~i~~G-------e~~aIlG~nGsGKSTLLk~LaG  109 (1394)
T TIGR00956        74 FDILKPMDGLIKPG-------ELTVVLGRPGSGCSTLLKTIAS  109 (1394)
T ss_pred             ceeeeCCEEEEECC-------EEEEEECCCCCCHHHHHHHHhC
Confidence            45789999999999       9999999999999999999853

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.71  E-value=2.9e-05  Score=64.68  Aligned_cols=37  Identities=19%  Similarity=0.404  Sum_probs=32.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+.++++++..|       +.+++.||+||||||+|+.++-+
T Consensus        18 ~~~le~vsL~ia~g-------e~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          18 RSALEDVSLTIASG-------ELVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             hhhhhccceeecCC-------CEEEEEcCCCccHHHHHHHHhcC
Confidence            34788999999999       99999999999999999988543

>PLN03140 ABC transporter G family member; Provisional

Probab=97.70  E-value=2.8e-05  Score=81.75  Aligned_cols=36  Identities=25%  Similarity=0.431  Sum_probs=33.5

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+|+++++.+++|       ++++|.||||+|||||||+++
T Consensus       177 ~~~IL~~vs~~i~~G-------e~~~llGpnGSGKSTLLk~La  212 (1470)
T PLN03140        177 KLTILKDASGIIKPS-------RMTLLLGPPSSGKTTLLLALA  212 (1470)
T ss_pred             cceeccCCeEEEeCC-------eEEEEEcCCCCCHHHHHHHHh
Confidence            456899999999999       999999999999999999984

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=97.70  E-value=2.3e-05  Score=65.35  Aligned_cols=40  Identities=28%  Similarity=0.423  Sum_probs=34.7

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .+.+....+++++|+.+++|       ++++|.||||+||||.+-++
T Consensus        11 ~K~y~kr~Vv~~Vsl~v~~G-------EiVGLLGPNGAGKTT~Fymi   50 (243)
T COG1137          11 AKSYKKRKVVNDVSLEVNSG-------EIVGLLGPNGAGKTTTFYMI   50 (243)
T ss_pred             hHhhCCeeeeeeeeEEEcCC-------cEEEEECCCCCCceeEEEEE
Confidence            34556778889999999999       99999999999999987765

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.65  E-value=4.8e-05  Score=62.73  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=36.9

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +-++..-.|+++|++...|       +++.|.|..|+|||||||.|-++
T Consensus        14 K~~G~~eVLKGvSL~A~~G-------dVisIIGsSGSGKSTfLRCiN~L   55 (256)
T COG4598          14 KRYGEHEVLKGVSLQANAG-------DVISIIGSSGSGKSTFLRCINFL   55 (256)
T ss_pred             hhcccchhhcceeeecCCC-------CEEEEecCCCCchhHHHHHHHhh
Confidence            3456677899999999999       99999999999999999998654

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.60  E-value=6.8e-05  Score=61.33  Aligned_cols=34  Identities=26%  Similarity=0.477  Sum_probs=30.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+|+++++.+++|       +.++|+||.|+||||||-.++
T Consensus        24 ~IL~~V~L~v~~G-------e~vaiVG~SGSGKSTLl~vlA   57 (228)
T COG4181          24 SILKGVELVVKRG-------ETVAIVGPSGSGKSTLLAVLA   57 (228)
T ss_pred             eEeecceEEecCC-------ceEEEEcCCCCcHHhHHHHHh
Confidence            5889999999999       999999999999999987653

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.60  E-value=3.5e-05  Score=64.99  Aligned_cols=36  Identities=19%  Similarity=0.356  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +..+.++++++..+       +++.|.|.||+||||||++++-
T Consensus        19 k~~l~~~sL~I~~g-------~FvtViGsNGAGKSTlln~iaG   54 (263)
T COG1101          19 KRALNGLSLEIAEG-------DFVTVIGSNGAGKSTLLNAIAG   54 (263)
T ss_pred             HHHHhcCceeecCC-------ceEEEEcCCCccHHHHHHHhhC
Confidence            46888999999999       9999999999999999999853

>PLN03140 ABC transporter G family member; Provisional

Probab=97.59  E-value=5.4e-05  Score=79.62  Aligned_cols=36  Identities=22%  Similarity=0.298  Sum_probs=33.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+|+++++.+++|       ++++|.||||+|||||||+++.
T Consensus       893 ~~iL~~vs~~i~~G-------el~aL~G~sGaGKTTLL~~LaG  928 (1470)
T PLN03140        893 LQLLREVTGAFRPG-------VLTALMGVSGAGKTTLMDVLAG  928 (1470)
T ss_pred             ceEeeCcEEEEECC-------eEEEEECCCCCCHHHHHHHHcC
Confidence            36899999999999       9999999999999999999854

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.59  E-value=6e-05  Score=79.37  Aligned_cols=35  Identities=29%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +..+|++++|++++|       ++++|+||+||||||+++++
T Consensus      1180 ~~~vL~~lsl~i~~G-------~~vAIVG~SGsGKSTl~~LL 1214 (1466)
T PTZ00265       1180 NVPIYKDLTFSCDSK-------KTTAIVGETGSGKSTVMSLL 1214 (1466)
T ss_pred             CCccccCeeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            446899999999999       99999999999999999988

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.56  E-value=4.4e-05  Score=62.69  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++|+||||+||||+|+.+.
T Consensus        26 ~~i~I~G~tGSGKTTll~aL~   46 (186)
T cd01130          26 KNILISGGTGSGKTTLLNALL   46 (186)
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            899999999999999999884

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.56  E-value=5.1e-05  Score=70.83  Aligned_cols=30  Identities=23%  Similarity=0.530  Sum_probs=28.3

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMR  212 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk  212 (229)
                      .|.++++++..|       ++++|.||+||||||+||
T Consensus        21 vL~~Vsl~i~~G-------Eiv~L~G~SGsGKSTLLr   50 (504)
T TIGR03238        21 ILVKFNKELPSS-------SLLFLCGSSGDGKSEILA   50 (504)
T ss_pred             HHhCCceeecCC-------CEEEEECCCCCCHHHHHh
Confidence            578899999999       999999999999999999

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.55  E-value=7.8e-05  Score=61.23  Aligned_cols=38  Identities=37%  Similarity=0.657  Sum_probs=32.7

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +..++-+..+|..+..|       +.+=++||||+||||||-.++
T Consensus         9 v~~~tRL~plS~qv~aG-------e~~HliGPNGaGKSTLLA~lA   46 (248)
T COG4138           9 VAESTRLGPLSGEVRAG-------EILHLVGPNGAGKSTLLARMA   46 (248)
T ss_pred             ccccccccccccccccc-------eEEEEECCCCccHHHHHHHHh
Confidence            44567888889899888       999999999999999997663

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.53  E-value=0.00014  Score=63.00  Aligned_cols=34  Identities=26%  Similarity=0.291  Sum_probs=31.8

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++||+++.|       +.++|+|.+||||||+-|++.
T Consensus        27 ~avd~Vsf~i~~g-------e~~glVGESG~GKSTlgr~i~   60 (268)
T COG4608          27 KAVDGVSFSIKEG-------ETLGLVGESGCGKSTLGRLIL   60 (268)
T ss_pred             EEecceeEEEcCC-------CEEEEEecCCCCHHHHHHHHH
Confidence            6788999999999       999999999999999999883

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.53  E-value=6.3e-05  Score=63.02  Aligned_cols=21  Identities=33%  Similarity=0.672  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|+||||+||||+|+++.
T Consensus        29 ~~~~i~G~NGsGKSTll~~i~   49 (213)
T cd03279          29 GLFLICGPTGAGKSTILDAIT   49 (213)
T ss_pred             CEEEEECCCCCCHHHHHHHhe
Confidence            799999999999999999985

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.52  E-value=9.2e-05  Score=78.37  Aligned_cols=35  Identities=17%  Similarity=0.273  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||||++.
T Consensus       651 ~~~l~~isl~i~~G-------~~v~IvG~~GsGKSTLl~~l~  685 (1522)
T TIGR00957       651 PPTLNGITFSIPEG-------ALVAVVGQVGCGKSSLLSALL  685 (1522)
T ss_pred             CceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            36899999999999       999999999999999999984

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PTZ00243 ABC transporter; Provisional

Probab=97.52  E-value=7.9e-05  Score=78.97  Aligned_cols=35  Identities=23%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       +.++|+||||+||||||+++.
T Consensus       673 ~~iL~~isl~i~~G-------~~~~IiG~nGsGKSTLL~~i~  707 (1560)
T PTZ00243        673 KVLLRDVSVSVPRG-------KLTVVLGATGSGKSTLLQSLL  707 (1560)
T ss_pred             ceeEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            46899999999999       999999999999999999984

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.52  E-value=6.8e-05  Score=79.18  Aligned_cols=35  Identities=23%  Similarity=0.390  Sum_probs=32.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+|||||||+++
T Consensus       439 ~~~l~~i~l~i~~G-------~~~~I~G~~GsGKSTLl~~l~  473 (1490)
T TIGR01271       439 TPVLKNISFKLEKG-------QLLAVAGSTGSGKSSLLMMIM  473 (1490)
T ss_pred             CcceeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45799999999999       999999999999999999984

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=97.51  E-value=9.3e-05  Score=78.20  Aligned_cols=48  Identities=21%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             eEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      -|+++++       +..|-|+ ...|+++++++++|       +.++|+|++|+||||+++.+
T Consensus      1234 ~I~f~nV-------sf~Y~~~~~~vL~~isl~I~~G-------ekvaIVG~SGSGKSTL~~lL 1282 (1495)
T PLN03232       1234 SIKFEDV-------HLRYRPGLPPVLHGLSFFVSPS-------EKVGVVGRTGAGKSSMLNAL 1282 (1495)
T ss_pred             cEEEEEE-------EEEECCCCCcccccceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            3666655       2344354 46899999999999       99999999999999999987

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.49  E-value=9.5e-05  Score=61.14  Aligned_cols=33  Identities=27%  Similarity=0.405  Sum_probs=29.4

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++.+||+.+.+       +.++|.|-||||||||-|+++
T Consensus        28 AV~~vSFtL~~~-------QTlaiIG~NGSGKSTLakMla   60 (267)
T COG4167          28 AVKPVSFTLREG-------QTLAIIGENGSGKSTLAKMLA   60 (267)
T ss_pred             cccceEEEecCC-------cEEEEEccCCCcHhHHHHHHh
Confidence            456788888888       999999999999999999985

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.48  E-value=0.0001  Score=63.32  Aligned_cols=23  Identities=26%  Similarity=0.436  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+|+||||+||||+|+.+..+
T Consensus        26 ~~~~IvG~NGsGKStll~Ai~~l   48 (251)
T cd03273          26 QFNAITGLNGSGKSNILDAICFV   48 (251)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999999999544

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.47  E-value=9.8e-05  Score=60.93  Aligned_cols=30  Identities=27%  Similarity=0.461  Sum_probs=25.5

Q ss_pred             ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++++..|       +.++|.||.|+||||||..|+-
T Consensus        18 fdl~v~~g-------e~vAi~GpSGaGKSTLLnLIAG   47 (231)
T COG3840          18 FDLTVPAG-------EIVAILGPSGAGKSTLLNLIAG   47 (231)
T ss_pred             EEEeecCC-------cEEEEECCCCccHHHHHHHHHh
Confidence            44556667       9999999999999999999954

>PLN03130 ABC transporter C family member; Provisional

Probab=97.44  E-value=0.00013  Score=77.62  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=38.7

Q ss_pred             eEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      -|+++++       ...|-|+ ..+|++++|++++|       ++++|+|++|+||||+++.+
T Consensus      1237 ~I~f~nV-------sf~Y~~~~~~VL~~is~~I~~G-------ekVaIVGrSGSGKSTLl~lL 1285 (1622)
T PLN03130       1237 SIKFEDV-------VLRYRPELPPVLHGLSFEISPS-------EKVGIVGRTGAGKSSMLNAL 1285 (1622)
T ss_pred             cEEEEEE-------EEEeCCCCCceecceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            3666654       2344344 36899999999999       99999999999999999987

>PTZ00243 ABC transporter; Provisional

Probab=97.43  E-value=0.00014  Score=77.22  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=31.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .+|++++|++++|       ++++|+|++|+||||+++++
T Consensus      1324 ~vL~~vsf~I~~G-------ekVaIVGrTGSGKSTLl~lL 1356 (1560)
T PTZ00243       1324 LVLRGVSFRIAPR-------EKVGIVGRTGSGKSTLLLTF 1356 (1560)
T ss_pred             ceeecceEEECCC-------CEEEEECCCCCCHHHHHHHH
Confidence            4899999999999       99999999999999999988

>KOG0927|consensus

Probab=97.43  E-value=0.00013  Score=68.52  Aligned_cols=38  Identities=29%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++.-..+.+.+|.+.+|       +.++|.|||||||||+|+.++
T Consensus        85 ~~g~~l~kd~~~El~~g-------~rygLiG~nG~Gkst~L~~i~  122 (614)
T KOG0927|consen   85 FHGVELIKDVTLELNRG-------RRYGLIGPNGSGKSTFLRAIA  122 (614)
T ss_pred             cCCceeeeeeeEEecCC-------ceEEEEcCCCCcHhHHHHHHh
Confidence            45567788899999999       999999999999999999985

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.00017  Score=63.84  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=31.4

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++++||++++|       ++++|+|-+||||||+.+++
T Consensus        19 ~av~~vs~~i~~G-------E~lgiVGESGsGKS~~~~ai   51 (316)
T COG0444          19 KAVDGVSFELKKG-------EILGIVGESGSGKSVLAKAI   51 (316)
T ss_pred             EEEeceeEEEcCC-------cEEEEEcCCCCCHHHHHHHH
Confidence            5889999999999       99999999999999999987

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.40  E-value=0.00023  Score=67.33  Aligned_cols=34  Identities=32%  Similarity=0.426  Sum_probs=31.8

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++||++.+|       ++++|+|..||||||+.|+++
T Consensus       305 ~Av~~VSf~l~~G-------E~lglVGeSGsGKSTlar~i~  338 (539)
T COG1123         305 KAVDDVSFDLREG-------ETLGLVGESGSGKSTLARILA  338 (539)
T ss_pred             eeeeeeeeEecCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4688999999999       999999999999999999983

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.38  E-value=0.00018  Score=76.13  Aligned_cols=35  Identities=31%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...|++++|++++|       +.++|+|++|+|||||++++.
T Consensus      1232 ~~vL~~is~~I~~G-------ekvaIvGrSGsGKSTLl~lL~ 1266 (1490)
T TIGR01271      1232 RAVLQDLSFSVEGG-------QRVGLLGRTGSGKSTLLSALL 1266 (1490)
T ss_pred             cceeeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            46899999999999       999999999999999999983

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.38  E-value=0.00016  Score=76.61  Aligned_cols=34  Identities=21%  Similarity=0.300  Sum_probs=32.2

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +..|++++|++++|       ++++|+|++|+||||+++++
T Consensus      1299 ~~vL~~is~~I~~G-------ekiaIVGrTGsGKSTL~~lL 1332 (1522)
T TIGR00957      1299 DLVLRHINVTIHGG-------EKVGIVGRTGAGKSSLTLGL 1332 (1522)
T ss_pred             cccccceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999       99999999999999999987

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=97.35  E-value=0.00021  Score=75.59  Aligned_cols=34  Identities=12%  Similarity=0.377  Sum_probs=32.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...++++++++++|       +.++|+||+||||||||+.+
T Consensus       630 ~~vL~~inl~i~~G-------e~vaIvG~sGSGKSTLl~lL  663 (1495)
T PLN03232        630 KPTLSDINLEIPVG-------SLVAIVGGTGEGKTSLISAM  663 (1495)
T ss_pred             CceeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHH
Confidence            46899999999999       99999999999999999988

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.31  E-value=0.00028  Score=56.66  Aligned_cols=37  Identities=27%  Similarity=0.542  Sum_probs=33.3

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .|.+-.+.+++++|.+|       +++-|.||.||||||||--+
T Consensus        12 l~g~cLLa~~n~Tia~G-------eivtlMGPSGcGKSTLls~~   48 (213)
T COG4136          12 LPGSCLLANVNFTIAKG-------EIVTLMGPSGCGKSTLLSWM   48 (213)
T ss_pred             CCCceEEEeeeEEecCC-------cEEEEECCCCccHHHHHHHH
Confidence            46677888899999999       99999999999999999866

>PLN03130 ABC transporter C family member; Provisional

Probab=97.29  E-value=0.00028  Score=75.14  Aligned_cols=37  Identities=19%  Similarity=0.447  Sum_probs=33.5

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      ...++++++++++|       +.++|+||+|+||||||+.+ |..
T Consensus       630 ~~vL~~inl~i~~G-------e~vaIvG~sGSGKSTLl~lLlG~~  667 (1622)
T PLN03130        630 RPTLSNINLDVPVG-------SLVAIVGSTGEGKTSLISAMLGEL  667 (1622)
T ss_pred             CceeeceeEEecCC-------CEEEEECCCCCCHHHHHHHHHHhh
Confidence            46899999999999       99999999999999999988 443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.24  E-value=0.00029  Score=59.69  Aligned_cols=23  Identities=35%  Similarity=0.510  Sum_probs=20.4

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++|+||||+|||||++.+.
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~   54 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLE   54 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            34799999999999999999874

>KOG0055|consensus

Probab=97.11  E-value=0.00036  Score=71.21  Aligned_cols=36  Identities=31%  Similarity=0.567  Sum_probs=32.7

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      |+-.+|++++|++++|       +.++|+||+||||||+++.+
T Consensus       364 pdv~Il~g~sl~i~~G-------~~valVG~SGsGKST~i~LL  399 (1228)
T KOG0055|consen  364 PDVKILKGVSLKIPSG-------QTVALVGPSGSGKSTLIQLL  399 (1228)
T ss_pred             CcchhhCCeEEEeCCC-------CEEEEECCCCCCHHHHHHHH
Confidence            4446889999999999       99999999999999999876

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.07  E-value=0.00034  Score=62.05  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=23.6

Q ss_pred             ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+.+..+       ..++|+||+|+||||+|+.+.
T Consensus       137 l~~~v~~~-------~~ili~G~tGsGKTTll~al~  165 (308)
T TIGR02788       137 LRLAIASR-------KNIIISGGTGSGKTTFLKSLV  165 (308)
T ss_pred             HHHHhhCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            33455566       899999999999999999763

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.07  E-value=0.00058  Score=60.26  Aligned_cols=21  Identities=38%  Similarity=0.545  Sum_probs=19.3

Q ss_pred             CcEEEEEeCCCCChHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+++|.||||+||||+++.+
T Consensus        62 p~IIGIaG~~GSGKSTlar~L   82 (290)
T TIGR00554        62 PYIISIAGSVAVGKSTTARIL   82 (290)
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            378999999999999999987

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.07  E-value=0.00065  Score=64.34  Aligned_cols=36  Identities=33%  Similarity=0.508  Sum_probs=32.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      ..++++||++.+|       +.++|+|-.||||||+.+++ |++
T Consensus        23 ~~v~~vsf~v~~G-------E~lgIvGESGsGKSt~a~~i~gll   59 (539)
T COG1123          23 PAVRDVSFEVEPG-------EILGIVGESGSGKSTLALALMGLL   59 (539)
T ss_pred             eeeecceEEecCC-------cEEEEEcCCCCCHHHHHHHHhccC
Confidence            5889999999999       99999999999999999877 543

>KOG0061|consensus

Probab=97.06  E-value=0.00058  Score=66.16  Aligned_cols=37  Identities=24%  Similarity=0.502  Sum_probs=34.3

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +...+|++++..+++|       +.++|.||.|+||||||+.++
T Consensus        41 ~~k~iL~~vsg~~~~G-------el~AimG~SGsGKtTLL~~La   77 (613)
T KOG0061|consen   41 KTKTILKGVSGTAKPG-------ELLAIMGPSGSGKTTLLNALA   77 (613)
T ss_pred             ccceeeeCcEEEEecC-------eEEEEECCCCCCHHHHHHHHh
Confidence            4578999999999999       999999999999999999885

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.06  E-value=0.00048  Score=64.47  Aligned_cols=33  Identities=30%  Similarity=0.470  Sum_probs=31.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+.+++|.+.+|       +.++|.||.|+|||||.|++
T Consensus       350 pil~~isF~l~~G-------~~lgIIGPSgSGKSTLaR~l  382 (580)
T COG4618         350 PILKGISFALQAG-------EALGIIGPSGSGKSTLARLL  382 (580)
T ss_pred             cceecceeEecCC-------ceEEEECCCCccHHHHHHHH
Confidence            6889999999999       99999999999999999987

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.01  E-value=0.00077  Score=67.99  Aligned_cols=33  Identities=21%  Similarity=0.231  Sum_probs=29.4

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|++++|++..|       ++++|||+||+|||||++-+-
T Consensus       622 ~Lk~vsl~Ip~G-------eiv~VtGvsGSGKSTLl~~~l  654 (924)
T TIGR00630       622 NLKNITVSIPLG-------LFTCITGVSGSGKSTLINDTL  654 (924)
T ss_pred             CcCceEEEEeCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            478899999999       999999999999999999553

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=96.91  E-value=0.001  Score=61.24  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=33.4

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ....+.++++.+++|       ++++|+|++|+||||+|+++.-.
T Consensus       395 eryvlr~vNL~ikpG-------dvvaVvGqSGaGKttllRmi~G~  432 (593)
T COG2401         395 ERYVLRNLNLEIKPG-------DVVAVVGQSGAGKTTLLRMILGA  432 (593)
T ss_pred             eeeeeeceeeEecCC-------CeEEEEecCCCCcchHHHHHHHH
Confidence            345788999999999       99999999999999999998443

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.83  E-value=0.00098  Score=60.50  Aligned_cols=20  Identities=30%  Similarity=0.609  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+||||+||||+|+.+
T Consensus       135 glilI~GpTGSGKTTtL~aL  154 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAI  154 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            79999999999999999885

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>KOG0059|consensus

Probab=96.81  E-value=0.001  Score=67.01  Aligned_cols=39  Identities=23%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             eeeCCee-EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        169 TYIPNST-VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       169 ~~vp~~~-~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++... .++++++.++++       ++.++.||||+||||++|++
T Consensus       572 k~y~~~~~Av~~ls~~V~~g-------ecfgLLG~NGAGKtT~f~ml  611 (885)
T KOG0059|consen  572 KVYGGKDGAVRGLSFAVPPG-------ECFGLLGVNGAGKTTTFKML  611 (885)
T ss_pred             eeecchhhhhcceEEEecCC-------ceEEEecCCCCCchhhHHHH
Confidence            3444333 788999999999       99999999999999999976

>KOG0219|consensus

Probab=96.81  E-value=0.00048  Score=67.11  Aligned_cols=69  Identities=14%  Similarity=0.015  Sum_probs=54.7

Q ss_pred             cCCCCCceEEeccccCcccCCCc--eeeCCeeEe-cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHh
Q psy13262        146 GLEEPHPYISALESLYPCATGDQ--TYIPNSTVI-GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQ  222 (229)
Q Consensus       146 ~~~~~~~~i~~~~~~hpll~~~~--~~vp~~~~l-~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~  222 (229)
                      .++.+||+++..+ +||++..+.  .+.+++..+ .|             +...-..|+++++|++|||.+||-.+.|++
T Consensus       617 l~~~rHp~lE~Qd-~~~fIpNdv~le~~~~~~~IiTG-------------pNMGGKSTyir~~Gvi~lmAQIGcfVPce~  682 (902)
T KOG0219|consen  617 LKQSRHPVLEGQD-EIPFIPNDVVLEKGKCRMLIITG-------------PNMGGKSTYIRQVGVIVLMAQIGCFVPCES  682 (902)
T ss_pred             HHhcccchhhccc-cCCCCCCccccccCCceEEEEeC-------------CCcCccchhhhhhhHHHHHHHhCCceehhh
Confidence            4667899998876 899997544  334777644 44             224556899999999999999999999999


Q ss_pred             cCCCcc
Q psy13262        223 MENPQL  228 (229)
Q Consensus       223 ~G~~v~  228 (229)
                      +++||+
T Consensus       683 A~i~Iv  688 (902)
T KOG0219|consen  683 ATISIV  688 (902)
T ss_pred             cCCchh
Confidence            999986

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.73  E-value=0.0017  Score=57.95  Aligned_cols=32  Identities=28%  Similarity=0.343  Sum_probs=24.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .++++++||||+||||++..++..  +++.|--|
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~--l~~~g~~V  145 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHK--YKAQGKKV  145 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH--HHhcCCeE
Confidence            389999999999999999988654  34555443

>PRK09183 transposase/IS protein; Provisional

Probab=96.73  E-value=0.0018  Score=56.16  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=24.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.++|+||+|+|||+|...+|....  +.|..|
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~--~~G~~v  133 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAV--RAGIKV  133 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHH--HcCCeE
Confidence            8899999999999999999865533  456544

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.73  E-value=0.0019  Score=59.74  Aligned_cols=26  Identities=31%  Similarity=0.436  Sum_probs=22.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      ++++|+||||+||||+++.++-..++
T Consensus       192 ~vi~lvGpnG~GKTTtlakLA~~~~~  217 (420)
T PRK14721        192 GVYALIGPTGVGKTTTTAKLAARAVI  217 (420)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999988654433

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.69  E-value=0.0014  Score=54.46  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .+.+|||-||+||||||..|+...
T Consensus        38 pIT~i~GENGsGKSTLLEaiA~~~   61 (233)
T COG3910          38 PITFITGENGSGKSTLLEAIAAGM   61 (233)
T ss_pred             ceEEEEcCCCccHHHHHHHHHhhc
Confidence            799999999999999999987543

>TIGR00618 sbcc exonuclease SbcC

Probab=96.68  E-value=0.0014  Score=67.24  Aligned_cols=24  Identities=21%  Similarity=0.452  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .+.+|+||||+||||+|..|+++.
T Consensus        27 gl~~I~G~nGaGKSTildAI~~aL   50 (1042)
T TIGR00618        27 PIFLICGKTGAGKTTLLDAITYAL   50 (1042)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHh
Confidence            599999999999999999997664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=96.67  E-value=0.0014  Score=60.93  Aligned_cols=33  Identities=18%  Similarity=0.172  Sum_probs=28.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++ +.+.+|       ++++|.||||+||||++++++
T Consensus       144 ~aID~l-l~I~~G-------Q~igI~G~sGaGKSTLl~~I~  176 (434)
T PRK07196        144 NAINGL-LTIGKG-------QRVGLMAGSGVGKSVLLGMIT  176 (434)
T ss_pred             eeccce-EeEecc-------eEEEEECCCCCCccHHHHHHh
Confidence            356677 888888       999999999999999999874

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.66  E-value=0.0023  Score=60.28  Aligned_cols=24  Identities=33%  Similarity=0.403  Sum_probs=21.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ++++++||||+||||++..++-..
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~~  280 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAARC  280 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHHH
Confidence            799999999999999999887543

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=96.66  E-value=0.0016  Score=66.89  Aligned_cols=25  Identities=28%  Similarity=0.513  Sum_probs=22.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      .+++|+||||+||||+|..|+++.+
T Consensus        31 ~l~~I~G~tGaGKStildai~~aLy   55 (1047)
T PRK10246         31 GLFAITGPTGAGKTTLLDAICLALY   55 (1047)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            7999999999999999999987643

>PHA02562 46 endonuclease subunit; Provisional

Probab=96.65  E-value=0.0018  Score=61.65  Aligned_cols=24  Identities=38%  Similarity=0.488  Sum_probs=21.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ...+|+||||+||||+|..|..+.
T Consensus        28 g~~~i~G~NG~GKStll~aI~~~l   51 (562)
T PHA02562         28 KKTLITGKNGAGKSTMLEALTFAL   51 (562)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            699999999999999999997654

>KOG0055|consensus

Probab=96.65  E-value=0.0014  Score=67.04  Aligned_cols=36  Identities=33%  Similarity=0.579  Sum_probs=32.4

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      |+-.++++++|++++|       +.++|+||.||||||.+-++
T Consensus      1001 P~~~Il~~l~l~i~~G-------qTvALVG~SGsGKSTvI~LL 1036 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAG-------QTVALVGPSGSGKSTVISLL 1036 (1228)
T ss_pred             CCchhhcCCcEEecCC-------CEEEEECCCCCCHHHHHHHH
Confidence            6667899999999999       99999999999999987654

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=96.63  E-value=0.0021  Score=68.46  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=28.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQ  213 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~  213 (229)
                      .|++++|++..|       ++++|+|+||+|||||++-
T Consensus       610 ~Lk~isl~Ip~G-------eiv~VtG~nGSGKSTLl~~  640 (1809)
T PRK00635        610 NLKDLTISLPLG-------RLTVVTGVSGSGKSSLIND  640 (1809)
T ss_pred             CccceEEEEcCC-------cEEEEEcCCCCCHHHHHHH
Confidence            478999999999       9999999999999999993

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=96.59  E-value=0.0025  Score=64.48  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=29.6

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++++..|       ++++|+|+||+|||||++.+.
T Consensus       624 ~L~~isl~Ip~G-------eivgVtGvsGSGKSTLl~~~l  656 (943)
T PRK00349        624 NLKNVDVEIPLG-------KFTCVTGVSGSGKSTLINETL  656 (943)
T ss_pred             CcCceEEEEeCC-------CEEEEEcCCCCCHHHHHHHHH
Confidence            367888999999       999999999999999999764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.58  E-value=0.002  Score=55.21  Aligned_cols=21  Identities=38%  Similarity=0.558  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||||+||||+++.+.
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~   64 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLL   64 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            589999999999999999773

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>KOG0054|consensus

Probab=96.56  E-value=0.0023  Score=66.66  Aligned_cols=48  Identities=23%  Similarity=0.301  Sum_probs=40.2

Q ss_pred             eEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      -|++++.       +-.|-|+ +.+|+++++.++++       +.++|+|..|+||||++.++
T Consensus      1138 ~I~f~~~-------~~RYrp~lp~VLk~is~~I~p~-------eKVGIVGRTGaGKSSL~~aL 1186 (1381)
T KOG0054|consen 1138 EIEFEDL-------SLRYRPNLPLVLKGISFTIKPG-------EKVGIVGRTGAGKSSLILAL 1186 (1381)
T ss_pred             eEEEEEe-------EEEeCCCCcchhcCceEEEcCC-------ceEEEeCCCCCCHHHHHHHH
Confidence            4556554       2466676 68999999999999       99999999999999998876

>PF10240 DUF2464: Protein of unknown function (DUF2464); InterPro: IPR018798 FAM125A and FAM125B (also known as Multivesicular body subunit 12) interacts with CD2AP and CIN85/SH3KBP1, and is thought to be involved in the ligand-mediated internalization and down-regulation of EGF receptor []

Probab=96.56  E-value=0.0049  Score=53.27  Aligned_cols=75  Identities=29%  Similarity=0.490  Sum_probs=44.3

Q ss_pred             CCCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEecccCCCCc
Q psy13262         11 PDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPD   90 (229)
Q Consensus        11 ~~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~   90 (229)
                      .++.-|++++++.++...|.||+.|++|.|. . ..       ..| .|+||+ |-..++...--|.||.+++.....|.
T Consensus        57 ~~~~Vv~di~ii~~k~~~P~Gy~~i~~t~dt-~-~~-------a~r-KkrLCv-K~~pr~sa~~AV~DI~i~sksK~~p~  125 (251)
T PF10240_consen   57 TPGNVVTDIQIIDEKDPIPHGYSYISETVDT-K-EK-------ALR-KKRLCV-KLSPRGSAETAVTDIIICSKSKQAPP  125 (251)
T ss_dssp             GG-EEEEEEEEEETTS---TT-EE--B-TTT----B---------S-SEEEEE-EEEEGGG-S-EEEEEEEEETT----T
T ss_pred             CCCCEEEEEEEecCCCCCCCCcEeccccccc-h-hh-------hhc-ceEEEE-EeeeccchhhheeeEEEeccCCcCCC
Confidence            3567799999999999999999999999998 1 11       233 455665 44445667888999999998887888


Q ss_pred             hhhHHH
Q psy13262         91 GFCLIA   96 (229)
Q Consensus        91 ~y~~l~   96 (229)
                      +|+.+.
T Consensus       126 ~yt~~G  131 (251)
T PF10240_consen  126 GYTCAG  131 (251)
T ss_dssp             TEEEEE
T ss_pred             CceEEE
Confidence            887654

; PDB: 3TOW_A.

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=96.49  E-value=0.0027  Score=59.02  Aligned_cols=40  Identities=33%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++.++++.|.  =.+.+++++.||||-|||||.|+++
T Consensus       349 ~k~~g~F~L~V~~G~--i~~gEvigilGpNgiGKTTFvk~LA  388 (591)
T COG1245         349 KKTYGDFKLEVEEGE--IYDGEVIGILGPNGIGKTTFVKLLA  388 (591)
T ss_pred             eeecCceEEEecCCe--eecceEEEEECCCCcchHHHHHHHh
Confidence            334556666665442  1234899999999999999999885

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=96.47  E-value=0.003  Score=63.94  Aligned_cols=25  Identities=28%  Similarity=0.623  Sum_probs=22.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..+.+|+||||+||||+|-.|.++.
T Consensus        25 ~gi~lI~G~nGsGKSSIldAI~~AL   49 (908)
T COG0419          25 SGIFLIVGPNGAGKSSILDAITFAL   49 (908)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            3799999999999999999997764

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=96.46  E-value=0.0025  Score=43.81  Aligned_cols=20  Identities=40%  Similarity=0.547  Sum_probs=17.8

Q ss_pred             EEEEeCCCCChHHHHHHHHH
Q psy13262        197 LLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       197 ~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++|+|+.|+||||+.+.+.-
T Consensus         2 i~i~G~~gsGKst~~~~l~~   21 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAE   21 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            68999999999999998853

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.46  E-value=0.0023  Score=56.61  Aligned_cols=23  Identities=35%  Similarity=0.482  Sum_probs=20.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++|+||+|+|||||++.++-.
T Consensus        35 ~~i~i~G~~G~GKttl~~~l~~~   57 (300)
T TIGR00750        35 HRVGITGTPGAGKSTLLEALGME   57 (300)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            89999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.46  E-value=0.0035  Score=57.24  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      .+++|+||||+||||++..++....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~  162 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCV  162 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999998865543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=96.44  E-value=0.0026  Score=58.48  Aligned_cols=40  Identities=25%  Similarity=0.437  Sum_probs=36.7

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..|-|+..+|.+++|++..|       ..++++||.|+||||.+|.+
T Consensus       270 F~y~~~r~iL~~isf~i~~g-------~tvAiVg~SG~gKsTI~rll  309 (497)
T COG5265         270 FAYDPRRPILNGISFTIPLG-------KTVAIVGESGAGKSTILRLL  309 (497)
T ss_pred             eeccccchhhcCccccccCc-------cEEEEEeCCCCcHHHHHHHH
Confidence            35678899999999999999       99999999999999999976

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=96.43  E-value=0.0032  Score=56.41  Aligned_cols=33  Identities=24%  Similarity=0.200  Sum_probs=28.1

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++.+ +.+.+|       ++++|.|+||+||||||++++
T Consensus        58 ~aiD~l-~~i~~G-------qri~I~G~sG~GKTtLl~~Ia   90 (326)
T cd01136          58 RAIDGL-LTVGKG-------QRLGIFAGSGVGKSTLLGMIA   90 (326)
T ss_pred             EEEeee-eEEcCC-------cEEEEECCCCCChHHHHHHHh
Confidence            356666 777777       999999999999999999885

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=96.40  E-value=0.003  Score=61.64  Aligned_cols=23  Identities=30%  Similarity=0.576  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++|.||||+||||+|+.+.++
T Consensus        29 ~~~~i~G~Ng~GKttll~ai~~~   51 (650)
T TIGR03185        29 PIILIGGLNGAGKTTLLDAIQLA   51 (650)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999998553

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=96.39  E-value=0.003  Score=55.19  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|.||||+|||||||.++
T Consensus       111 ~~~~~i~g~~g~GKttl~~~l~  132 (270)
T TIGR02858       111 VLNTLIISPPQCGKTTLLRDLA  132 (270)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHh
Confidence            3689999999999999999984

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=96.35  E-value=0.0038  Score=47.05  Aligned_cols=23  Identities=39%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||.|+|||++++.++-.
T Consensus        20 ~~v~i~G~~G~GKT~l~~~i~~~   42 (151)
T cd00009          20 KNLLLYGPPGTGKTTLARAIANE   42 (151)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998644

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=96.34  E-value=0.0033  Score=58.31  Aligned_cols=34  Identities=18%  Similarity=0.117  Sum_probs=28.9

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++++ +.+..|       ++++|.|+||+||||||++++-
T Consensus       134 ~~id~l-~~i~~G-------q~~~I~G~sG~GKStLl~~I~~  167 (422)
T TIGR02546       134 RAIDGL-LTCGEG-------QRIGIFAGAGVGKSTLLGMIAR  167 (422)
T ss_pred             eeehhh-ccccCC-------CEEEEECCCCCChHHHHHHHhC
Confidence            356677 778788       9999999999999999998853

>PRK05922 type III secretion system ATPase; Validated

Probab=96.34  E-value=0.0033  Score=58.40  Aligned_cols=27  Identities=15%  Similarity=0.224  Sum_probs=24.1

Q ss_pred             ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+.+|       ++++|+||||+||||||++++
T Consensus       152 l~I~~G-------qrigI~G~nG~GKSTLL~~Ia  178 (434)
T PRK05922        152 LTLGKG-------QRIGVFSEPGSGKSSLLSTIA  178 (434)
T ss_pred             EEEcCC-------cEEEEECCCCCChHHHHHHHh
Confidence            566677       999999999999999999885

>PRK08149 ATP synthase SpaL; Validated

Probab=96.31  E-value=0.004  Score=57.75  Aligned_cols=33  Identities=18%  Similarity=0.136  Sum_probs=28.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++ +.+.+|       ++++|.|+||+||||||++++
T Consensus       140 ~aid~l-l~i~~G-------q~i~I~G~sG~GKTTLl~~i~  172 (428)
T PRK08149        140 RAIDGL-LTCGVG-------QRMGIFASAGCGKTSLMNMLI  172 (428)
T ss_pred             EEEeee-eeEecC-------CEEEEECCCCCChhHHHHHHh
Confidence            466677 788888       999999999999999999875

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.30  E-value=0.0036  Score=59.52  Aligned_cols=22  Identities=45%  Similarity=0.720  Sum_probs=20.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++||||.|+||||++|.++
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La   66 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLA   66 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHH
Confidence            4799999999999999999875

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.30  E-value=0.0043  Score=48.56  Aligned_cols=22  Identities=41%  Similarity=0.477  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++|.|+.|+|||||.|.++-
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~   44 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQ   44 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            7999999999999999998854

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR00606 rad50 rad50

Probab=96.29  E-value=0.0045  Score=64.95  Aligned_cols=23  Identities=39%  Similarity=0.677  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++|+||||+||||+|..+..+
T Consensus        29 ~~~~I~G~NGaGKTTil~ai~~a   51 (1311)
T TIGR00606        29 PLTILVGPNGAGKTTIIECLKYI   51 (1311)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            69999999999999999998543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN02796 D-glycerate 3-kinase

Probab=96.27  E-value=0.0038  Score=56.32  Aligned_cols=21  Identities=29%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -+++|.|++||||||+++.+.
T Consensus       101 liIGI~G~sGSGKSTLa~~L~  121 (347)
T PLN02796        101 LVIGISAPQGCGKTTLVFALV  121 (347)
T ss_pred             EEEEEECCCCCcHHHHHHHHH
Confidence            578999999999999999874

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=96.27  E-value=0.0037  Score=56.32  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||+|+||||+|+.+.
T Consensus       123 g~ili~G~tGSGKTT~l~al~  143 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMI  143 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999763

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>KOG0066|consensus

Probab=96.25  E-value=0.0033  Score=58.34  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=25.8

Q ss_pred             CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +-++.|-.|       ++.+|+||||-|||||||-|+-
T Consensus       282 nA~L~Iv~G-------RRYGLVGPNG~GKTTLLkHIa~  312 (807)
T KOG0066|consen  282 NASLTIVYG-------RRYGLVGPNGMGKTTLLKHIAA  312 (807)
T ss_pred             ccceEEEec-------ceecccCCCCCchHHHHHHHHh
Confidence            445556666       9999999999999999999864

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=96.23  E-value=0.0043  Score=57.67  Aligned_cols=27  Identities=22%  Similarity=0.175  Sum_probs=23.9

Q ss_pred             ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+..|       ++++|.||||+||||||++++
T Consensus       157 l~i~~G-------qrigI~G~sG~GKSTLL~~I~  183 (444)
T PRK08972        157 LTVGKG-------QRMGLFAGSGVGKSVLLGMMT  183 (444)
T ss_pred             EEEcCC-------CEEEEECCCCCChhHHHHHhc
Confidence            566667       999999999999999999885

>PRK14974 cell division protein FtsY; Provisional

Probab=96.23  E-value=0.0055  Score=55.21  Aligned_cols=32  Identities=28%  Similarity=0.423  Sum_probs=25.7

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..+++++||||+||||++..++.  .+.+.|..|
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~--~l~~~g~~V  171 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAY--YLKKNGFSV  171 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence            47999999999999999998874  345666554

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=96.22  E-value=0.0035  Score=66.92  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=29.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+.++++++.+|       ++++|||+||+|||||++.+
T Consensus       949 ~~lk~isl~i~~g-------ei~~itG~nGsGKStL~~~~  981 (1809)
T PRK00635        949 HNLKHIDLSLPRN-------ALTAVTGPSASGKHSLVFDI  981 (1809)
T ss_pred             ccccceeEEecCC-------cEEEEECCCCCChhHHHHHH
Confidence            3577889999999       99999999999999988766

>PRK04863 mukB cell division protein MukB; Provisional

Probab=96.22  E-value=0.0048  Score=65.12  Aligned_cols=24  Identities=38%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .+++|+|+||+||||+|+.+..+.
T Consensus        28 ~~~~l~G~NGaGKSTll~ai~~~l   51 (1486)
T PRK04863         28 LVTTLSGGNGAGKSTTMAAFVTAL   51 (1486)
T ss_pred             CeEEEECCCCCCHHHHHHHHHccc
Confidence            599999999999999999885443

>PLN02165 adenylate isopentenyltransferase

Probab=96.20  E-value=0.0046  Score=55.53  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+++|+||||+|||++...++-.
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~   66 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATR   66 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHH
Confidence            3479999999999999999887543

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.20  E-value=0.0065  Score=54.21  Aligned_cols=33  Identities=33%  Similarity=0.529  Sum_probs=29.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +-+.+.+|+++.|       ++.+|.|=+|||||||+|.+
T Consensus        42 vGv~~~sl~v~~G-------eIfViMGLSGSGKSTLvR~~   74 (386)
T COG4175          42 VGVNDASLDVEEG-------EIFVIMGLSGSGKSTLVRLL   74 (386)
T ss_pred             EeeccceeeecCC-------eEEEEEecCCCCHHHHHHHH
Confidence            4556788889888       99999999999999999988

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.20  E-value=0.0043  Score=61.31  Aligned_cols=23  Identities=39%  Similarity=0.465  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++++||||+||||++..++-.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            89999999999999999888654

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=96.13  E-value=0.0095  Score=55.57  Aligned_cols=33  Identities=24%  Similarity=0.204  Sum_probs=26.2

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++.+. .+.+|       ++++|.||+|+||||||++++.
T Consensus       155 aID~L~-~I~~G-------qri~I~G~SGsGKTTLL~~Ia~  187 (450)
T PRK06002        155 VIDIFT-PLCAG-------QRIGIFAGSGVGKSTLLAMLAR  187 (450)
T ss_pred             Eeeeec-eecCC-------cEEEEECCCCCCHHHHHHHHhC
Confidence            444442 56677       9999999999999999998754

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=96.13  E-value=0.0053  Score=57.24  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=27.1

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++.+ +.+.+|       ++++|.|+||+||||||++++
T Consensus       153 ~iD~l-~~i~~G-------q~~~I~G~sG~GKStLl~~I~  184 (440)
T TIGR01026       153 SIDGL-LTVGKG-------QRIGIFAGSGVGKSTLLGMIA  184 (440)
T ss_pred             eeeec-cccCCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            45555 777777       999999999999999999875

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=96.10  E-value=0.006  Score=56.95  Aligned_cols=32  Identities=25%  Similarity=0.162  Sum_probs=27.2

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++.+ +.+.+|       ++++|.|+||+||||||++++
T Consensus       158 aID~l-~~I~~G-------qrigI~G~sG~GKSTLl~~I~  189 (451)
T PRK05688        158 SINGL-LTVGRG-------QRLGLFAGTGVGKSVLLGMMT  189 (451)
T ss_pred             eecce-EEecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            45556 777777       999999999999999999884

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=96.09  E-value=0.0045  Score=57.53  Aligned_cols=33  Identities=21%  Similarity=0.187  Sum_probs=28.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++.+ +.+..|       ++++|.|+||+||||+|++++
T Consensus       144 ~aID~l-l~i~~G-------qrigI~G~sG~GKSTLL~~I~  176 (433)
T PRK07594        144 RAIDSV-ATCGEG-------QRVGIFSAPGVGKSTLLAMLC  176 (433)
T ss_pred             eeeeee-eecCCC-------CEEEEECCCCCCccHHHHHhc
Confidence            466666 778888       999999999999999999874

>PRK06936 type III secretion system ATPase; Provisional

Probab=96.07  E-value=0.006  Score=56.75  Aligned_cols=33  Identities=27%  Similarity=0.252  Sum_probs=27.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++.+ +.+.+|       ++++|.|+||+||||+|++++.
T Consensus       152 vid~l-~~i~~G-------q~~~I~G~sG~GKStLl~~Ia~  184 (439)
T PRK06936        152 VIDGL-LTCGEG-------QRMGIFAAAGGGKSTLLASLIR  184 (439)
T ss_pred             eeeee-EEecCC-------CEEEEECCCCCChHHHHHHHhc
Confidence            45556 677777       9999999999999999999864

>PRK09099 type III secretion system ATPase; Provisional

Probab=96.04  E-value=0.0066  Score=56.58  Aligned_cols=34  Identities=21%  Similarity=0.260  Sum_probs=28.4

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++++ +.+.+|       ++++|.|+||+||||+|++++.
T Consensus       152 ~~ID~l-~~i~~G-------q~~~I~G~sG~GKTtLl~~ia~  185 (441)
T PRK09099        152 RIVDGL-MTLGEG-------QRMGIFAPAGVGKSTLMGMFAR  185 (441)
T ss_pred             eeccce-eeecCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            355666 777777       9999999999999999998853

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=96.01  E-value=0.0057  Score=57.02  Aligned_cols=32  Identities=25%  Similarity=0.209  Sum_probs=27.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++ +.+.+|       ++++|.|+||+||||||++++
T Consensus       148 vid~l-~~i~~G-------q~i~I~G~sG~GKStLl~~I~  179 (438)
T PRK07721        148 AIDSL-LTVGKG-------QRVGIFAGSGVGKSTLMGMIA  179 (438)
T ss_pred             hhhee-eeecCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            45666 778888       999999999999999999875

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=96.01  E-value=0.0052  Score=55.55  Aligned_cols=21  Identities=38%  Similarity=0.585  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||.|+||||+|+.+.
T Consensus       163 ~nilI~G~tGSGKTTll~aLl  183 (344)
T PRK13851        163 LTMLLCGPTGSGKTTMSKTLI  183 (344)
T ss_pred             CeEEEECCCCccHHHHHHHHH
Confidence            789999999999999999863

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.99  E-value=0.0081  Score=55.33  Aligned_cols=32  Identities=19%  Similarity=0.300  Sum_probs=24.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .+.++|+||||+||||++..++..  +...|.-|
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~--L~~~GkkV  272 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQ--FHGKKKTV  272 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHH--HHHcCCcE
Confidence            479999999999999999988753  33445443

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=95.95  E-value=0.0067  Score=52.77  Aligned_cols=20  Identities=35%  Similarity=0.642  Sum_probs=18.5

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+||+|+||||+|+.+
T Consensus        81 GlilisG~tGSGKTT~l~al  100 (264)
T cd01129          81 GIILVTGPTGSGKTTTLYSA  100 (264)
T ss_pred             CEEEEECCCCCcHHHHHHHH
Confidence            68999999999999999875

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=95.93  E-value=0.0096  Score=56.50  Aligned_cols=38  Identities=24%  Similarity=0.304  Sum_probs=30.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++.-..++++.+.. ++       ..++|.||+||||||+.|.++
T Consensus       268 ~~g~~RLIDN~~~~~-~~-------~ii~i~G~sgsGKst~a~~la  305 (512)
T PRK13477        268 RCGSTRLIDNVFLMK-RQ-------PIIAIDGPAGAGKSTVTRAVA  305 (512)
T ss_pred             EeCCeEEEeeeEecc-CC-------cEEEEECCCCCCHHHHHHHHH
Confidence            456666777777755 44       799999999999999999886

>TIGR00767 rho transcription termination factor Rho

Probab=95.93  E-value=0.01  Score=54.58  Aligned_cols=31  Identities=16%  Similarity=0.329  Sum_probs=26.2

Q ss_pred             CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++.+.+.+|       +.++|+||.|+||||+++.++-
T Consensus       160 d~~~pig~G-------q~~~IvG~~g~GKTtL~~~i~~  190 (415)
T TIGR00767       160 DLFAPIGKG-------QRGLIVAPPKAGKTVLLQKIAQ  190 (415)
T ss_pred             eeEEEeCCC-------CEEEEECCCCCChhHHHHHHHH
Confidence            566667777       9999999999999999998643

Members of this family differ in the specificity of RNA binding.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=95.87  E-value=0.0087  Score=55.43  Aligned_cols=29  Identities=24%  Similarity=0.134  Sum_probs=25.1

Q ss_pred             ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+.+.+|       ++++|.|+||+||||||++++
T Consensus       133 ~~~~i~~G-------q~i~I~G~sG~GKTtLl~~I~  161 (418)
T TIGR03498       133 TFLPLCRG-------QRLGIFAGSGVGKSTLLSMLA  161 (418)
T ss_pred             eeccccCC-------cEEEEECCCCCChHHHHHHHh
Confidence            46667777       999999999999999998875

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG4000|consensus

Probab=95.87  E-value=0.013  Score=49.82  Aligned_cols=74  Identities=28%  Similarity=0.582  Sum_probs=59.5

Q ss_pred             CCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEecccCCCCch
Q psy13262         12 DDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDG   91 (229)
Q Consensus        12 ~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~~   91 (229)
                      ++.-|+.+.+++.+...|.||..|++|.|.  +...|+        .+|||. |.+.+..+..-|.||.+.+.+-.-|.+
T Consensus        77 p~~Vv~~l~vI~~kdp~P~gf~~I~~TaDs--~eka~R--------Kk~lci-k~~pRd~v~~AI~dIii~gktK~aP~~  145 (291)
T KOG4000|consen   77 PEYVVETLQVISDKDPPPKGFSQISRTADS--DEKAWR--------KKQLCI-KLSPRDTVTQAITDIIICGKTKAAPDG  145 (291)
T ss_pred             cceeeEEEEEeecCCCCCccceeeeecccc--hHHhhh--------hceeEE-EecCCccHHhhheeeEEeeccccCCCC
Confidence            345689999999999999999999999886  233343        466765 566677788889999999999888998


Q ss_pred             hhHHH
Q psy13262         92 FCLIA   96 (229)
Q Consensus        92 y~~l~   96 (229)
                      |....
T Consensus       146 yt~aG  150 (291)
T KOG4000|consen  146 YTLAG  150 (291)
T ss_pred             ceeec
Confidence            88654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=95.86  E-value=0.014  Score=53.74  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=30.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...+++++|++.+|       +.++|+|-+|||||+...++
T Consensus        23 ~~aVk~isf~i~~G-------EtlAlVGESGSGKSvTa~si   56 (534)
T COG4172          23 VEAVKGISFDIEAG-------ETLALVGESGSGKSVTALSI   56 (534)
T ss_pred             eEeeccceeeecCC-------CEEEEEecCCCCccHHHHHH
Confidence            45788999999999       99999999999999987766

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=95.86  E-value=0.0097  Score=55.04  Aligned_cols=33  Identities=21%  Similarity=0.188  Sum_probs=27.5

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++.+ +.+.+|       ++++|.|+||+||||||++++
T Consensus       126 ~~id~l-~~i~~G-------q~~~I~G~sG~GKTtLl~~I~  158 (411)
T TIGR03496       126 RAINGL-LTVGRG-------QRMGIFAGSGVGKSTLLGMMA  158 (411)
T ss_pred             Eeecce-EEEecC-------cEEEEECCCCCCHHHHHHHHh
Confidence            345555 778888       999999999999999998775

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>KOG0018|consensus

Probab=95.83  E-value=0.009  Score=59.99  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=28.3

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..|-....++++             .++..|+||||||||-+|-.|...
T Consensus        13 KSYkGh~~iGPF-------------~~FTaIIGPNGSGKSNlMDAISFV   48 (1141)
T KOG0018|consen   13 KSYKGHQVIGPF-------------DRFTAIIGPNGSGKSNLMDAISFV   48 (1141)
T ss_pred             ccccCceeecCc-------------hhceeeeCCCCCchHHHHHHHHHH
Confidence            344556677763             389999999999999999998653

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.82  E-value=0.011  Score=51.68  Aligned_cols=32  Identities=31%  Similarity=0.435  Sum_probs=25.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .++++++||+|+||||++.-++.  .+++.|.-|
T Consensus        72 ~~vi~l~G~~G~GKTTt~akLA~--~l~~~g~~V  103 (272)
T TIGR00064        72 PNVILFVGVNGVGKTTTIAKLAN--KLKKQGKSV  103 (272)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH--HHHhcCCEE
Confidence            47999999999999999877764  346667554

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=95.82  E-value=0.0072  Score=53.32  Aligned_cols=20  Identities=30%  Similarity=0.376  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+.|+|+||+||||||+.+
T Consensus       105 ~~v~l~G~pGsGKTTLl~~l  124 (290)
T PRK10463        105 LVLNLVSSPGSGKTTLLTET  124 (290)
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            79999999999999999866

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.79  E-value=0.0078  Score=57.95  Aligned_cols=22  Identities=18%  Similarity=0.307  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      -+++|.||||||||||++.++-
T Consensus        66 iIIGIaGpSGSGKTTLAk~Lag   87 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLN   87 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHh
Confidence            6889999999999999998853

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=95.78  E-value=0.0078  Score=53.31  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||.|+||||+|+.+.
T Consensus       133 ~~ilI~G~tGSGKTTll~al~  153 (299)
T TIGR02782       133 KNILVVGGTGSGKTTLANALL  153 (299)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999864

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=95.77  E-value=0.0083  Score=55.79  Aligned_cols=33  Identities=24%  Similarity=0.115  Sum_probs=27.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++++ +.+.+|       ++++|.|+||+||||++++++-
T Consensus       147 aid~l-~~i~~G-------q~~~i~G~sG~GKStLl~~i~~  179 (434)
T PRK08472        147 SIDGL-LTCGKG-------QKLGIFAGSGVGKSTLMGMIVK  179 (434)
T ss_pred             Hhhhc-ceecCC-------CEEEEECCCCCCHHHHHHHHhh
Confidence            45566 777777       9999999999999999998853

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=95.75  E-value=0.012  Score=54.90  Aligned_cols=39  Identities=33%  Similarity=0.375  Sum_probs=30.6

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|-+|.+.|.++. ..++|       ++++|.||||-||||.||.++
T Consensus        83 RYg~NgFkL~~LP-~pr~G-------~V~GilG~NGiGKsTalkILa  121 (591)
T COG1245          83 RYGVNGFKLYRLP-TPRPG-------KVVGILGPNGIGKSTALKILA  121 (591)
T ss_pred             eccCCceEEecCC-CCCCC-------cEEEEEcCCCccHHHHHHHHh
Confidence            5667777777653 23444       899999999999999999884

>PRK09862 putative ATP-dependent protease; Provisional

Probab=95.69  E-value=0.0075  Score=57.16  Aligned_cols=39  Identities=23%  Similarity=0.282  Sum_probs=30.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++....+..+++.+..|       +.++|+||||+||||++|.+.
T Consensus       193 v~Gq~~~~~al~laa~~G-------~~llliG~~GsGKTtLak~L~  231 (506)
T PRK09862        193 VIGQEQGKRGLEITAAGG-------HNLLLIGPPGTGKTMLASRIN  231 (506)
T ss_pred             EECcHHHHhhhheeccCC-------cEEEEECCCCCcHHHHHHHHh
Confidence            344455566677777777       899999999999999999884

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=95.66  E-value=0.008  Score=56.07  Aligned_cols=27  Identities=22%  Similarity=0.191  Sum_probs=23.6

Q ss_pred             ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+..|       ++++|.|+||+||||||++++
T Consensus       170 l~I~~G-------qri~I~G~sG~GKTTLL~~Ia  196 (455)
T PRK07960        170 LTVGRG-------QRMGLFAGSGVGKSVLLGMMA  196 (455)
T ss_pred             ccccCC-------cEEEEECCCCCCccHHHHHHh
Confidence            556666       999999999999999999875

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.64  E-value=0.011  Score=54.87  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .-+++|.|++||||||+.+.+.
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~  233 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALD  233 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3688899999999999999883

>PRK06820 type III secretion system ATPase; Validated

Probab=95.64  E-value=0.012  Score=54.79  Aligned_cols=33  Identities=21%  Similarity=0.148  Sum_probs=27.3

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++.+ +.+..|       ++++|.|+||+||||||++++.
T Consensus       153 aID~l-~~i~~G-------qri~I~G~sG~GKStLl~~I~~  185 (440)
T PRK06820        153 AIDGI-LSCGEG-------QRIGIFAAAGVGKSTLLGMLCA  185 (440)
T ss_pred             eecce-EEecCC-------CEEEEECCCCCChHHHHHHHhc
Confidence            45555 677777       9999999999999999998753

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.63  E-value=0.014  Score=53.43  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=24.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ++++|+||+|+||||++.-++..  +...|..|
T Consensus       207 ~ii~lvGptGvGKTTt~akLA~~--l~~~g~~V  237 (407)
T PRK12726        207 RIISLIGQTGVGKTTTLVKLGWQ--LLKQNRTV  237 (407)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeE
Confidence            89999999999999999888753  33445544

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=95.62  E-value=0.016  Score=50.90  Aligned_cols=23  Identities=35%  Similarity=0.496  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++|+||+|+||||++..++..
T Consensus       195 ~vi~~vGptGvGKTTt~~kLa~~  217 (282)
T TIGR03499       195 GVIALVGPTGVGKTTTLAKLAAR  217 (282)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999998766543

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=95.60  E-value=0.011  Score=48.98  Aligned_cols=25  Identities=40%  Similarity=0.498  Sum_probs=18.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      .+++|.|++|+|||++|+++.+..+
T Consensus        39 ~h~li~G~tgsGKS~~l~~ll~~l~   63 (205)
T PF01580_consen   39 PHLLIAGATGSGKSTLLRTLLLSLA   63 (205)
T ss_dssp             -SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCccHHHHHHHHHHH
Confidence            5899999999999999998755443

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.53  E-value=0.016  Score=55.21  Aligned_cols=26  Identities=31%  Similarity=0.425  Sum_probs=21.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      ++++|+||+|+||||++..++....+
T Consensus       351 ~vIaLVGPtGvGKTTtaakLAa~la~  376 (559)
T PRK12727        351 GVIALVGPTGAGKTTTIAKLAQRFAA  376 (559)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999887654333

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=95.49  E-value=0.014  Score=52.49  Aligned_cols=32  Identities=28%  Similarity=0.298  Sum_probs=23.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..+++|+|++|+|||||+..+.-.  +...|..|
T Consensus        56 ~~~igi~G~~GaGKSTl~~~l~~~--l~~~g~~v   87 (332)
T PRK09435         56 ALRIGITGVPGVGKSTFIEALGMH--LIEQGHKV   87 (332)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHH--HHHCCCeE
Confidence            379999999999999999876332  23445544

>cd01878 HflX HflX subfamily

Probab=95.49  E-value=0.013  Score=48.05  Aligned_cols=22  Identities=32%  Similarity=0.357  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+|++|+|||||++.+.-
T Consensus        42 ~~I~iiG~~g~GKStLl~~l~~   63 (204)
T cd01878          42 PTVALVGYTNAGKSTLFNALTG   63 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHhc
Confidence            5899999999999999988743

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=95.47  E-value=0.014  Score=53.97  Aligned_cols=32  Identities=19%  Similarity=0.182  Sum_probs=27.2

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++.+ +.+..|       ++++|.|+||+||||||++++
T Consensus       127 ~iD~l-~~i~~G-------qri~I~G~sG~GKTtLl~~i~  158 (413)
T TIGR03497       127 AIDGL-LTIGKG-------QRVGIFAGSGVGKSTLLGMIA  158 (413)
T ss_pred             eeeeE-EEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45666 777777       999999999999999999764

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PTZ00202 tuzin; Provisional

Probab=95.46  E-value=0.012  Score=54.88  Aligned_cols=21  Identities=29%  Similarity=0.373  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|||++|+||||++|.+.
T Consensus       287 rivvLtG~~G~GKTTLlR~~~  307 (550)
T PTZ00202        287 RIVVFTGFRGCGKSSLCRSAV  307 (550)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            699999999999999999875

>KOG1970|consensus

Probab=95.43  E-value=0.013  Score=55.64  Aligned_cols=23  Identities=48%  Similarity=0.696  Sum_probs=20.6

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++.||||.||||||.+|.++
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLs  131 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLS  131 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHH
Confidence            34899999999999999999875

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.41  E-value=0.017  Score=50.45  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+.+++.||||+||||+++.++..
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~   98 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQ   98 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHH
Confidence            389999999999999999988543

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=95.38  E-value=0.013  Score=52.40  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+|+.|+||||+|+.+.-
T Consensus       149 ~~ilI~G~tGSGKTTll~aL~~  170 (319)
T PRK13894        149 RNILVIGGTGSGKTTLVNAIIN  170 (319)
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999998753

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=95.38  E-value=0.013  Score=55.31  Aligned_cols=20  Identities=35%  Similarity=0.635  Sum_probs=18.3

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+||+|+||||+|+.+
T Consensus       243 GlilitGptGSGKTTtL~a~  262 (486)
T TIGR02533       243 GIILVTGPTGSGKTTTLYAA  262 (486)
T ss_pred             CEEEEEcCCCCCHHHHHHHH
Confidence            68999999999999999864

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PRK06315 type III secretion system ATPase; Provisional

Probab=95.37  E-value=0.014  Score=54.47  Aligned_cols=33  Identities=18%  Similarity=0.156  Sum_probs=27.1

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++++ +.+..|       ++++|.|+||+||||++++++-
T Consensus       154 aID~~-l~i~~G-------q~i~I~G~sG~GKStLl~~I~~  186 (442)
T PRK06315        154 CIDGM-LTVARG-------QRIGIFAGAGVGKSSLLGMIAR  186 (442)
T ss_pred             EEecc-ccccCC-------cEEEEECCCCCCcchHHHHhhc
Confidence            34444 677777       9999999999999999998863

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=95.33  E-value=0.017  Score=46.61  Aligned_cols=21  Identities=29%  Similarity=0.327  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++++|+.|.|||||++.+.
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~   56 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALL   56 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            899999999999999999873

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=95.32  E-value=0.015  Score=53.04  Aligned_cols=20  Identities=30%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+||.||||||+|+.+
T Consensus       150 GlilI~G~TGSGKTT~l~al  169 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASI  169 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            57899999999999999875

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=95.28  E-value=0.015  Score=50.22  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||-|+||||+|+.+.
T Consensus       128 ~~ili~G~tGSGKTT~l~all  148 (270)
T PF00437_consen  128 GNILISGPTGSGKTTLLNALL  148 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCccccchHHHHHh
Confidence            799999999999999998773

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.23  E-value=0.012  Score=52.81  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+|++|+|||||++.++-
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~  184 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAA  184 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            7999999999999999998864

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR00602 rad24 checkpoint protein rad24

Probab=95.23  E-value=0.015  Score=56.57  Aligned_cols=21  Identities=48%  Similarity=0.762  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|+||+|+||||+++.++
T Consensus       111 ~illL~GP~GsGKTTl~~~la  131 (637)
T TIGR00602       111 RILLITGPSGCGKSTTIKILS  131 (637)
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999985

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00763 AAA_PrkA PrkA AAA domain

Probab=95.21  E-value=0.02  Score=51.98  Aligned_cols=22  Identities=41%  Similarity=0.696  Sum_probs=19.7

Q ss_pred             CCcEEEEEeCCCCChHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+.++|+||.|+||||+.+.+
T Consensus        77 ~r~il~L~GPPGsGKStla~~L   98 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECL   98 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHH
Confidence            3478899999999999999987

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PF13245 AAA_19: Part of AAA domain

Probab=95.20  E-value=0.029  Score=39.48  Aligned_cols=20  Identities=25%  Similarity=0.497  Sum_probs=16.1

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      +.++|+||.|+|||+++-..
T Consensus        11 ~~~vv~g~pGtGKT~~~~~~   30 (76)
T PF13245_consen   11 PLFVVQGPPGTGKTTTLAAR   30 (76)
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            78889999999999554443

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=95.07  E-value=0.022  Score=53.08  Aligned_cols=22  Identities=18%  Similarity=0.119  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++++|.|+||+||||||++++-
T Consensus       159 qri~I~G~sG~GKTtLL~~I~~  180 (442)
T PRK08927        159 QRMGIFAGSGVGKSVLLSMLAR  180 (442)
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            9999999999999999998853

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=95.07  E-value=0.018  Score=51.56  Aligned_cols=21  Identities=19%  Similarity=0.320  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+|+.|+||||+|+.+.
T Consensus       145 ~nilI~G~tGSGKTTll~aL~  165 (323)
T PRK13833        145 LNIVISGGTGSGKTTLANAVI  165 (323)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999863

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.05  E-value=0.02  Score=53.81  Aligned_cols=22  Identities=32%  Similarity=0.546  Sum_probs=19.5

Q ss_pred             CCcEEEEEeCCCCChHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +...+++|||.||||||+|-++
T Consensus       257 p~GliLvTGPTGSGKTTTLY~~  278 (500)
T COG2804         257 PQGLILVTGPTGSGKTTTLYAA  278 (500)
T ss_pred             CCeEEEEeCCCCCCHHHHHHHH
Confidence            4579999999999999999865

>smart00053 DYNc Dynamin, GTPase

Probab=95.03  E-value=0.021  Score=49.05  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|.|++|+||||+|+.+.-
T Consensus        27 p~i~vvG~~~~GKSt~l~~i~g   48 (240)
T smart00053       27 PQIAVVGGQSAGKSSVLENFVG   48 (240)
T ss_pred             CeEEEEcCCCccHHHHHHHHhC
Confidence            5799999999999999999853

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>cd01854 YjeQ_engC YjeQ/EngC

Probab=94.99  E-value=0.02  Score=50.34  Aligned_cols=21  Identities=33%  Similarity=0.363  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.|+||+|||||++.+.
T Consensus       162 k~~~~~G~sg~GKSTlin~l~  182 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALL  182 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHh
Confidence            689999999999999999873

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR00368 Mg chelatase-related protein

Probab=94.96  E-value=0.012  Score=55.70  Aligned_cols=39  Identities=23%  Similarity=0.258  Sum_probs=30.5

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++.......+++.+..+       ..++|.||||+||||++|.+.
T Consensus       194 v~Gq~~~~~al~~aa~~g-------~~vlliG~pGsGKTtlar~l~  232 (499)
T TIGR00368       194 IKGQQHAKRALEIAAAGG-------HNLLLFGPPGSGKTMLASRLQ  232 (499)
T ss_pred             hcCcHHHHhhhhhhccCC-------CEEEEEecCCCCHHHHHHHHh
Confidence            344555566666666666       899999999999999999884

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK00098 GTPase RsgA; Reviewed

Probab=94.94  E-value=0.022  Score=50.27  Aligned_cols=21  Identities=38%  Similarity=0.521  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++|+||+|||||++.+.
T Consensus       165 k~~~~~G~sgvGKStlin~l~  185 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALA  185 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHh
Confidence            789999999999999999873

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=94.93  E-value=0.028  Score=48.79  Aligned_cols=25  Identities=36%  Similarity=0.388  Sum_probs=20.3

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..+++||||.|+|||||+..++...
T Consensus        29 a~~iGiTG~PGaGKSTli~~l~~~~   53 (266)
T PF03308_consen   29 AHVIGITGPPGAGKSTLIDALIREL   53 (266)
T ss_dssp             SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCcHHHHHHHHHHHH
Confidence            4799999999999999998776543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PTZ00035 Rad51 protein; Provisional

Probab=94.85  E-value=0.028  Score=50.60  Aligned_cols=25  Identities=20%  Similarity=0.216  Sum_probs=22.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      +.+.|+||||+|||+|+.+++..+.
T Consensus       119 ~iteI~G~~GsGKT~l~~~l~~~~q  143 (337)
T PTZ00035        119 SITELFGEFRTGKTQLCHTLCVTCQ  143 (337)
T ss_pred             eEEEEECCCCCchhHHHHHHHHHhc
Confidence            8999999999999999998876654

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=94.83  E-value=0.016  Score=52.08  Aligned_cols=20  Identities=20%  Similarity=0.385  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|+.|+||||+|+.+
T Consensus       161 ~nili~G~tgSGKTTll~aL  180 (332)
T PRK13900        161 KNIIISGGTSTGKTTFTNAA  180 (332)
T ss_pred             CcEEEECCCCCCHHHHHHHH
Confidence            78999999999999999885

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=94.82  E-value=0.034  Score=51.62  Aligned_cols=24  Identities=33%  Similarity=0.436  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ++++++||||+||||++-.++...
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~~  245 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAARY  245 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHH
Confidence            799999999999999988765443

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=94.78  E-value=0.018  Score=58.39  Aligned_cols=30  Identities=20%  Similarity=0.335  Sum_probs=26.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM  211 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL  211 (229)
                      -.|+++++++..+       +.++|||+.|||||+|.
T Consensus        14 hNLKni~v~iP~~-------~l~v~TGvSGSGKSSLa   43 (943)
T PRK00349         14 HNLKNIDLDIPRD-------KLVVFTGLSGSGKSSLA   43 (943)
T ss_pred             ccccccccccCCC-------ceEEEecCCCCCchhHH
Confidence            3578888888888       99999999999999985

>KOG0065|consensus

Probab=94.69  E-value=0.02  Score=59.30  Aligned_cols=33  Identities=21%  Similarity=0.409  Sum_probs=0.0

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|++++..+++|       -..+|.|++|+||||||..++
T Consensus       806 LL~~V~G~~kPG-------~LTALMG~SGAGKTTLLdvLA  838 (1391)
T KOG0065|consen  806 LLNNVSGAFKPG-------VLTALMGESGAGKTTLLDVLA  838 (1391)
T ss_pred             hhhcCceEecCC-------ceeehhcCCCCchHHHHHHHh

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=94.67  E-value=0.028  Score=51.82  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++|+|+.|+|||||.+.++-
T Consensus       219 ~~~IvI~G~~gsGKTTL~~~La~  241 (399)
T PRK08099        219 VRTVAILGGESSGKSTLVNKLAN  241 (399)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHH
Confidence            48999999999999999988764

>PRK06526 transposase; Provisional

Probab=94.66  E-value=0.042  Score=47.53  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=25.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|+||.|+|||++...++...  ++.|..|.
T Consensus        99 ~nlll~Gp~GtGKThLa~al~~~a--~~~g~~v~  130 (254)
T PRK06526         99 ENVVFLGPPGTGKTHLAIGLGIRA--CQAGHRVL  130 (254)
T ss_pred             ceEEEEeCCCCchHHHHHHHHHHH--HHCCCchh
Confidence            789999999999999999887543  45566553

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=94.65  E-value=0.037  Score=51.46  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=26.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++. .+.+.+|       ++++|.|+||+||||++++++.
T Consensus       146 aID~-ll~I~~G-------qri~I~G~sG~GKTtLl~~Ia~  178 (432)
T PRK06793        146 SIDS-MLTIGIG-------QKIGIFAGSGVGKSTLLGMIAK  178 (432)
T ss_pred             EEec-cceecCC-------cEEEEECCCCCChHHHHHHHhc
Confidence            3444 3677777       9999999999999999998854

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=94.59  E-value=0.032  Score=49.48  Aligned_cols=20  Identities=40%  Similarity=0.650  Sum_probs=17.4

Q ss_pred             CcEEEEEeCCCCChHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQ  213 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~  213 (229)
                      ...+.+|||.||||||.|-.
T Consensus       125 ~GLILVTGpTGSGKSTTlAa  144 (353)
T COG2805         125 RGLILVTGPTGSGKSTTLAA  144 (353)
T ss_pred             CceEEEeCCCCCcHHHHHHH
Confidence            36999999999999998754

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=94.58  E-value=0.033  Score=50.24  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=20.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..++|.|+||.||||++|+++-+.
T Consensus        26 g~vli~G~~G~gKttl~r~~~~~~   49 (337)
T TIGR02030        26 GGVMVMGDRGTGKSTAVRALAALL   49 (337)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHhh
Confidence            578899999999999999995443

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PRK06851 hypothetical protein; Provisional

Probab=94.57  E-value=0.044  Score=49.96  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=24.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .++++|+|+.|+||||++|.++-  .|...|..|
T Consensus        30 ~~~~il~G~pGtGKStl~~~i~~--~~~~~g~~V   61 (367)
T PRK06851         30 NRIFILKGGPGTGKSTLMKKIGE--EFLEKGYDV   61 (367)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence            38999999999999999997643  444446543

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=94.55  E-value=0.048  Score=46.90  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|+||.|.||||++..++.... .+.|.+|+
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl   63 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLI-TQHGVRVG   63 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEE
Confidence            8999999999999999998865433 33466654

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	229
2o8b_B	1022	Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M		4e-12
3tow_A	152	Crystal Structure Of The Mabp Domain Of Mvb12b Of H		5e-10
3thw_B	918	Human Mutsbeta Complexed With An Idl Of 4 Bases (Lo		4e-06
1wbb_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		3e-04
3k0s_A	799	Crystal Structure Of E.Coli Dna Mismatch Repair Pro		3e-04
1wbd_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		3e-04
1wb9_A	800	Crystal Structure Of E. Coli Dna Mismatch Repair En		3e-04
1oh5_A	800	The Crystal Structure Of E. Coli Muts Binding To Dn		3e-04
1ng9_A	800	E.Coli Muts R697a: An Atpase-Asymmetry Mutant Lengt		3e-04
1nne_A	765	Crystal Structure Of The Muts-adpbef3-dna Complex L		4e-04
2o8b_A	934	Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T M		5e-04
2o8e_A	934	Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR,		5e-04

>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 1022

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 55/89 (61%), Gaps = 10/89 (11%)
Query: 139 VCVPTFLGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKP 194
           +C P  L  E+  P++    S +PC T    GD  +IPN  +IG C+E+ +  G    K 
Sbjct: 736 MCRPVILLPEDTPPFLELKGSRHPCITKTFFGDD-FIPNDILIG-CEEEEQENG----KA 789
Query: 195 TVLLLTGPNMGGKSTVMRQLGLITILAQM 223
             +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 790 YCVLVTGPNMGGKSTLMRQAGLLAVMAQM 818

>pdb|3TOW|A Chain A, Crystal Structure Of The Mabp Domain Of Mvb12b Of Human Escrt-I Complex Length = 152

Iteration: 1
 Score = 60.8 bits (146), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 62/109 (56%), Gaps = 3/109 (2%)
Query: 15  PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
           PIT + V+    + P+GY V+++T D   DAD+W++  F  + TRYLC +++ S     +
Sbjct: 3   PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 61
Query: 73  DYIVENICIINEKETPPDGFCLIARTLDSDQGQICERGGVVDYKPQQSN 121
             ++ ++ +I+ K+T P GF  I  T+D+ +    ++   + + P+ S 
Sbjct: 62  GNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDST 110

>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And Adp Length = 918

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 20/74 (27%)
Query: 151 HPYISALESLYPCATGDQ-TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKST 209
           HP I  L        G+Q  Y+PN+T +    ED E          V+++TGPNMGGKS+
Sbjct: 648 HPVIDVL-------LGEQDQYVPNNTDLS---EDSER---------VMIITGPNMGGKSS 688
Query: 210 VMRQLGLITILAQM 223
            ++Q+ LITI+AQ+
Sbjct: 689 YIKQVALITIMAQI 702

>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38a Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
           +L++TGPNMGGKST MRQ  LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634

>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein Muts, D693n Mutant, In Complex With Gt Mismatched Dna Length = 799

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
           +L++TGPNMGGKST MRQ  LI ++A
Sbjct: 608 MLIITGPNMGGKSTYMRQTALIALMA 633

>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38q Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
           +L++TGPNMGGKST MRQ  LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634

>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme Muts, E38t Mutant, In Complex With A G.T Mismatch Length = 800

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
           +L++TGPNMGGKST MRQ  LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634

>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With A C:a Mismatch Length = 800

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
           +L++TGPNMGGKST MRQ  LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634

>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant Length = 800

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILA 221
           +L++TGPNMGGKST MRQ  LI ++A
Sbjct: 609 MLIITGPNMGGKSTYMRQTALIALMA 634

>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex Length = 765

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/28 (60%), Positives = 23/28 (82%)
Query: 196 VLLLTGPNMGGKSTVMRQLGLITILAQM 223
           ++L+TGPNM GKST +RQ  LI +LAQ+
Sbjct: 578 LVLITGPNMAGKSTFLRQTALIALLAQV 605

>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR Length = 934

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
           K    ++TGPNMGGKST +RQ G+I ++AQ+
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQI 691

>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH ADP BOUND TO Msh2 Only Length = 934

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
           K    ++TGPNMGGKST +RQ G+I ++AQ+
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQI 691

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	229
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	9e-25
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	6e-05
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	5e-22
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	2e-16
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	6e-16
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	8e-16
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	3e-15

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens} Length = 152

 Score = 94.8 bits (235), Expect = 9e-25
 Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 15  PITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL--FQI 72
           PIT + V+    + P+GY V+++T D   DAD+W++  F  + TRYLC +++ S     +
Sbjct: 3   PITGVGVVASRNRAPTGYDVVAQTAD-GVDADLWKDGLFKSKVTRYLCFTRSFSKENSHL 61

Query: 73  DYIVENICIINEKETPPDGFCLIARTLDSDQ 103
             ++ ++ +I+ K+T P GF  I  T+D+ +
Sbjct: 62  GNVLVDMKLIDIKDTLPVGFIPIQETVDTQE 92

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens} Length = 152

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 10  IPDDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESL 69
                 +  + +I+     P G+  I +TVD    A           + + LC+ K    
Sbjct: 59  SHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAF----------RKKRLCI-KFIPR 107

Query: 70  FQIDYIVENICIINEKETPPDGFCLI 95
              +  + +I I+   +  P  +  I
Sbjct: 108 DSTEAAICDIRIMGRTKQAPPQYTFI 133

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* Length = 1022

 Score = 93.2 bits (232), Expect = 5e-22
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 8/92 (8%)

Query: 135 YQQGVCVPTFLGLEEPHPYISALESLYPC---ATGDQTYIPNSTVIGRCKEDVESGGEGN 191
               +C P  L  E+  P++    S +PC         +IPN  +IG      E   + N
Sbjct: 732 GDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGC-----EEEEQEN 786

Query: 192 RKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
            K   +L+TGPNMGGKST+MRQ GL+ ++AQM
Sbjct: 787 GKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQM 818

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* Length = 918

 Score = 76.9 bits (190), Expect = 2e-16
 Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 12/57 (21%)

Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
              Y+PN+T +           +  R   V+++TGPNMGGKS+ ++Q+ LITI+AQ+
Sbjct: 658 QDQYVPNNTDLS---------EDSER---VMIITGPNMGGKSSYIKQVALITIMAQI 702

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* Length = 800

 Score = 75.2 bits (186), Expect = 6e-16
 Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 13/57 (22%)

Query: 167 DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
           ++ +I N   +             + +  +L++TGPNMGGKST MRQ  LI ++A +
Sbjct: 593 NEPFIANPLNL-------------SPQRRMLIITGPNMGGKSTYMRQTALIALMAYI 636

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* Length = 934

 Score = 75.1 bits (185), Expect = 8e-16
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 14/64 (21%)

Query: 162 PC--ATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITI 219
            C     +  +IPN     +             K    ++TGPNMGGKST +RQ G+I +
Sbjct: 640 ACVEVQDEIAFIPNDVYFEK------------DKQMFHIITGPNMGGKSTYIRQTGVIVL 687

Query: 220 LAQM 223
           +AQ+
Sbjct: 688 MAQI 691

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* Length = 765

 Score = 72.9 bits (180), Expect = 3e-15
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 15/56 (26%)

Query: 168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQM 223
             ++PN   +                  ++L+TGPNM GKST +RQ  LI +LAQ+
Sbjct: 565 TEFVPNDLEMAH---------------ELVLITGPNMAGKSTFLRQTALIALLAQV 605

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	229
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	99.84
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.8
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.77
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.74
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.69
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.68
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.83
1g6h_A	257	High-affinity branched-chain amino acid transport	98.8
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.79
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.79
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.78
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.76
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.76
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.76
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.75
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.74
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.73
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.7
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.69
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.68
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.68
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.67
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.64
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.63
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.63
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.63
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.63
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.61
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.59
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.59
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.58
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.57
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.56
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.56
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.55
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.54
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.53
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.5
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.48
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.48
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.44
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.36
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.34
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.25
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.22
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.2
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.15
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.14
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.14
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.13
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.1
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.09
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.04
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.02
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.02
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.01
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.98
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	97.96
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.88
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.88
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	97.87
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.87
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.87
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.86
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.85
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.85
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.84
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.84
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.83
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.79
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.74
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.74
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.72
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.71
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.71
2og2_A	359	Putative signal recognition particle receptor; nuc	97.71
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.7
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.7
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.69
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.67
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.67
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.66
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.66
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.65
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.65
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.65
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.64
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.63
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.62
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.56
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.52
3tow_A	152	Multivesicular BODY subunit 12B; beta prism, membr	97.51
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.48
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.47
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.45
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.42
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.4
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.39
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.38
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.37
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.37
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.37
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.32
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	97.31
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.31
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	97.3
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.29
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.29
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.26
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.22
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.2
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.15
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.1
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.07
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.07
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.05
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.04
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.0
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.98
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.96
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.92
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.92
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.89
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.89
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.87
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.84
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	96.81
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.81
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.75
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.73
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.7
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.62
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.57
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.5
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.43
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	96.43
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.37
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.36
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.28
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.23
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.21
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.14
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.11
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.11
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.03
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.0
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.98
3bos_A	242	Putative DNA replication factor; P-loop containing	95.92
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.89
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	95.78
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.72
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.7
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	95.68
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.67
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.67
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	95.64
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.64
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.62
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.6
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	95.57
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.54
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.52
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.51
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	95.32
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.31
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.29
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.26
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.23
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	95.12
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.03
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.01
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	94.95
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	94.93
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.84
3ice_A	422	Transcription termination factor RHO; transcriptio	94.79
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	94.75
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	94.67
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	94.61
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	94.59
2ged_A	193	SR-beta, signal recognition particle receptor beta	94.59
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	94.52
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	94.52
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	94.52
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	94.51
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	94.49
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	94.46
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.3
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.27
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	94.25
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	94.24
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.17
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	94.08
2xxa_A	433	Signal recognition particle protein; protein trans	94.06
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	94.06
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	94.05
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	93.98
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	93.91
2z43_A	324	DNA repair and recombination protein RADA; archaea	93.89
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	93.88
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	93.82
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	93.74
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	93.72
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	93.7
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	93.63
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	93.56
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	93.55
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	93.55
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	93.54
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	93.51
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	93.5
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	93.47
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	93.45
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	93.42
1u94_A	356	RECA protein, recombinase A; homologous recombinat	93.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	93.36
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	93.34
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	93.2
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	93.17
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	93.15
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	93.09
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	93.08
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	93.07
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	93.04
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.0
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	92.88
2qgz_A	308	Helicase loader, putative primosome component; str	92.88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	92.86
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	92.78
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	92.72
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	92.7
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	92.69
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	92.65
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	92.46
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	92.45
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.43
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	92.39
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.38
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	92.33
3pvs_A	447	Replication-associated recombination protein A; ma	92.29
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	92.25
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	92.21
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	92.21
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	92.14
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	92.11
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	92.05
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	91.97
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	91.94
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	91.88
3end_A	307	Light-independent protochlorophyllide reductase ir	91.83
2fna_A	357	Conserved hypothetical protein; structural genomic	91.82
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	91.71
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	91.64
1tue_A	212	Replication protein E1; helicase, replication, E1E	91.64
1xp8_A	366	RECA protein, recombinase A; recombination, radior	91.64
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	91.64
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	91.62
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	91.62
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	91.57
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	91.54
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	91.38
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	91.27
3co5_A	143	Putative two-component system transcriptional RES	91.23
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	91.19
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.16
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	91.08
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	91.06
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	90.98
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	90.93
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	90.92
2chq_A	319	Replication factor C small subunit; DNA-binding pr	90.83
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	90.74
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.61
2r44_A	331	Uncharacterized protein; putative ATPase, structur	90.47
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	90.36
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	90.29
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	90.25
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	90.22
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	90.21
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	90.2
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	90.17
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	90.09
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	90.08
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	90.07
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	89.81
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	89.78
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	89.78
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	89.7
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	89.6
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	89.59
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	89.56
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	89.54
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	89.51
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	89.45
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	89.18
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	89.18
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	89.15
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	89.13
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	88.95
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	88.82
3fwy_A	314	Light-independent protochlorophyllide reductase I	88.39
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	88.35
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	88.33
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	88.2
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	87.69
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	87.48
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	87.61
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	87.53
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	87.23
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	87.07
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	86.98
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	86.79
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	86.17
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	85.99
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	85.86
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	85.82
3io5_A	333	Recombination and repair protein; storage dimer, i	85.61
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	85.49
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	85.33
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	85.27
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	84.82
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	84.82
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	84.75
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	84.68
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	84.66
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	84.61
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	84.04
3l0o_A	427	Transcription termination factor RHO; helicase, RH	83.71
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	83.66
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	83.5
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	83.47
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	83.32
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	83.14
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	82.72
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	82.45
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	82.28
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	82.27
3fgn_A	251	Dethiobiotin synthetase; biotin biosynthesis, BIOD	81.96
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	81.85
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	81.23
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	80.46
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	80.09

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}

Probab=99.84  E-value=5.3e-22  Score=156.09  Aligned_cols=111  Identities=30%  Similarity=0.621  Sum_probs=97.2

Q ss_pred             CCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeec-cEEEEEeeccc--ccCCCcEEEEeEEecccCCCCc
Q psy13262         14 KPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRK-TRYLCVSKTES--LFQIDYIVENICIINEKETPPD   90 (229)
Q Consensus        14 ~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rk-gRyv~~vk~~~--~~~~~giV~di~~l~~~~~~P~   90 (229)
                      +|||+|+||++.++||+||++|++|+|| .+|+||++ .+|.+| +||||..|...  ....+.+|+|+.++++++.+|.
T Consensus         2 ~PIT~v~vv~~~~~~P~gy~~Is~T~dG-~dAdLw~~-~lF~~k~~rYLC~sr~~~~~~~~~~~VvtDl~vi~~Kd~lP~   79 (152)
T 3tow_A            2 DPITGVGVVASRNRAPTGYDVVAQTADG-VDADLWKD-GLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPV   79 (152)
T ss_dssp             CCCCEEEEESSTTCCCTTCEECCBCTTS-CBCCCSCC-CTTSCCCCCEEEEECCCCSTTGGGCEEEEEEEEEETTSCCCT
T ss_pred             CCccEEEEEecCCCCCCCCeEEEecCCC-Cchhhccc-cccccCCeEEEEEecCCcccccCCCCeEEEEEEEeCCCCCCC
Confidence            7999999999999999999999999998 99999998 566556 99999998653  2345799999999999999999


Q ss_pred             hhhHHHHhhhhhhhhhhhcceeeeecccccccchhh
Q psy13262         91 GFCLIARTLDSDQGQICERGGVVDYKPQQSNNTIFS  126 (229)
Q Consensus        91 ~y~~l~~~~~s~qt~l~e~~~~v~l~~l~~~~~~~~  126 (229)
                      ||+.+.++.++++++++++..++++.++.+...+..
T Consensus        80 Gf~~I~~T~dt~~~a~rKkrLCvK~~p~~s~~~AVt  115 (152)
T 3tow_A           80 GFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAIC  115 (152)
T ss_dssp             TCEECCBCTTTCCBCCSSEEEEEEEEEGGGCSCEEE
T ss_pred             CcEEeeccCCcchhhhceeEEEEEEccCCccceeEE
Confidence            999999999999999999999998877665544333

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.80  E-value=3.1e-20  Score=183.11  Aligned_cols=157  Identities=22%  Similarity=0.256  Sum_probs=115.9

Q ss_pred             eccEEEEEeecccccCCCcEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhh--hcce-------e-eeecccccccch
Q psy13262         56 RKTRYLCVSKTESLFQIDYIVENICIINEK-ETPPDGFCLIARTLDSDQGQIC--ERGG-------V-VDYKPQQSNNTI  124 (229)
Q Consensus        56 rkgRyv~~vk~~~~~~~~giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~--e~~~-------~-v~l~~l~~~~~~  124 (229)
                      +++||+++++.++..++++.+++.+.++.. ...+.....+++.....+..+.  +...       + -.+..+....+.
T Consensus       532 ~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~~~~l~~~~~~~~~~l~~~~~~  611 (918)
T 3thx_B          532 SGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHH  611 (918)
T ss_dssp             TTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             cCCEEEEEEcHHHHhhCCCeEEEEEecCCeeEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999999988999999999988876 3334345555443333221111  0100       0 011344567788


Q ss_pred             hhhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccC----CCceeeCCeeEecCccceeccCCCCCCCCcE
Q psy13262        125 FSQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCAT----GDQTYIPNSTVIGRCKEDVESGGEGNRKPTV  196 (229)
Q Consensus       125 ~~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~----~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~  196 (229)
                      ++++|++.+++    ..++|+|++.+.    ..+.+.++|||++.    ....++|||+.+.     +..|       ++
T Consensus       612 la~lD~l~s~A~~a~~~~~~~P~~~~~----~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~-----~~~g-------~i  675 (918)
T 3thx_B          612 LATVDCIFSLAKVAKQGDYCRPTVQEE----RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLS-----EDSE-------RV  675 (918)
T ss_dssp             HHHHHHHHHHHHHHTSSSCBCCEEESS----CEEEEEEECCHHHHHHTCSCSSSCCEEEEEC-----TTSC-------CE
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCcccCC----CcEEEEeccchhhhhhhccCCceeccccccc-----CCCC-------eE
Confidence            99999999875    578999999875    47889999999974    2246788876665     3344       89


Q ss_pred             EEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        197 LLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       197 ~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++||||||||||||||++|++++|+|+|++||
T Consensus       676 ~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vp  707 (918)
T 3thx_B          676 MIITGPNMGGKSSYIKQVALITIMAQIGSYVP  707 (918)
T ss_dssp             EEEESCCCHHHHHHHHHHHHHHHHHHHTCCBS
T ss_pred             EEEECCCCCchHHHHHHHHHHHHHhhcCcccc
Confidence            99999999999999999999999999999987

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.77  E-value=5.4e-19  Score=172.48  Aligned_cols=153  Identities=21%  Similarity=0.306  Sum_probs=112.2

Q ss_pred             cEEEEEeecccccCCC-cEEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc--------ceee--eecccccccchh
Q psy13262         58 TRYLCVSKTESLFQID-YIVENICIINEK-ETPPDGFCLIARTLDSDQGQICER--------GGVV--DYKPQQSNNTIF  125 (229)
Q Consensus        58 gRyv~~vk~~~~~~~~-giV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v--~l~~l~~~~~~~  125 (229)
                      ..|+++++..++.+++ +.+|+-+..+.. +..|+ ...+++.....+..+.+.        ...+  ....+....+.+
T Consensus       471 ~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~-l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~l  549 (800)
T 1wb9_A          471 HGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPE-LKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASAL  549 (800)
T ss_dssp             TEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHH
T ss_pred             ceEEEEEeccccccCCcceEEeeeccCCCEEeCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4589999988877787 899986666655 55555 666665544322222111        1111  113445677889


Q ss_pred             hhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcEEEE
Q psy13262        126 SQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLL  199 (229)
Q Consensus       126 ~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~l  199 (229)
                      +++|++.+++    .+++|+|++.+.    +.+.+.++|||++..  ...+++||+.+++      .|       ++++|
T Consensus       550 a~lD~l~s~A~~a~~~~~~~P~~~~~----~~i~i~~~rHP~le~~~~~~~vlndisl~~------~g-------~i~~I  612 (800)
T 1wb9_A          550 AELDVLVNLAERAYTLNYTCPTFIDK----PGIRITEGRHPVVEQVLNEPFIANPLNLSP------QR-------RMLII  612 (800)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCCEECSS----SCEEEEEECCTTHHHHCSSCCCCEEEEECS------SS-------CEEEE
T ss_pred             HHHHHHHHHHHHHHhCCCcccEECCC----CCEEEEeccccEEEccCCCceeeecccccC------CC-------cEEEE
Confidence            9999999875    689999999874    568999999999852  2457777776652      33       89999


Q ss_pred             EeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        200 TGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       200 tGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      |||||||||||||+++++.+|+|+|++||
T Consensus       613 tGpNGsGKSTlLr~iagl~~~~q~G~~vp  641 (800)
T 1wb9_A          613 TGPNMGGKSTYMRQTALIALMAYIGSYVP  641 (800)
T ss_dssp             ECCTTSSHHHHHHHHHHHHHHHTTTCCBS
T ss_pred             ECCCCCChHHHHHHHHHHHHHHhcCcccc
Confidence            99999999999999999999999999886

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.74  E-value=1.9e-18  Score=172.34  Aligned_cols=168  Identities=27%  Similarity=0.334  Sum_probs=103.3

Q ss_pred             eeccEEEEEeecccccC-CCcEEEEeEEe-ccc-CCCCchhhHHHHhhhhhhhhh----hhc-ceee-----eecccccc
Q psy13262         55 LRKTRYLCVSKTESLFQ-IDYIVENICII-NEK-ETPPDGFCLIARTLDSDQGQI----CER-GGVV-----DYKPQQSN  121 (229)
Q Consensus        55 ~rkgRyv~~vk~~~~~~-~~giV~di~~l-~~~-~~~P~~y~~l~~~~~s~qt~l----~e~-~~~v-----~l~~l~~~  121 (229)
                      .+++||++.++..+..+ +++.+...+.. +.. +..|+. ..+.......+..+    .+. ..+.     .+..+...
T Consensus       634 ~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el-~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~  712 (1022)
T 2o8b_B          634 IGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTI-EKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSA  712 (1022)
T ss_dssp             CGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             ecCceEEEEEehhhhcccCCCceEEeeeccCccEEechHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34488999999988766 67765433433 322 444543 33222222211110    000 0000     11234456


Q ss_pred             cchhhhhhHHHHHH------hCCCccceEecCCCCCceEEeccccCcccCC---CceeeCCeeEecCccceeccCCCCCC
Q psy13262        122 NTIFSQRNILKDMY------QQGVCVPTFLGLEEPHPYISALESLYPCATG---DQTYIPNSTVIGRCKEDVESGGEGNR  192 (229)
Q Consensus       122 ~~~~~~~d~l~~~~------~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~---~~~~vp~~~~l~~~~~~~~~~~~~~~  192 (229)
                      .+.++++|++.+++      ..++|+|++.+.....+.+++.++|||++..   ...+++||+.++     +..+.....
T Consensus       713 ~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~-----~~~~~~~~~  787 (1022)
T 2o8b_B          713 VECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIG-----CEEEEQENG  787 (1022)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEECCCC------CCCCCCEEEEES-----CCCSCC---
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCccCCccccCCCCCceEEEEeccccEEEEEecCCceEeeeeeec-----cccccccCC
Confidence            78899999999875      3578999998532234679999999999862   234566666554     332000000


Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ..++++||||||||||||||++|++.+|||+|++||
T Consensus       788 ~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vp  823 (1022)
T 2o8b_B          788 KAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVP  823 (1022)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEE
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHHhheeEEec
Confidence            128999999999999999999999999999999886

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.69  E-value=4e-17  Score=158.63  Aligned_cols=149  Identities=21%  Similarity=0.282  Sum_probs=107.0

Q ss_pred             cEEEEEeecccccCCCc-EEEEeEEeccc-CCCCchhhHHHHhhhhhhhhhhhc--------ceee--eecccccccchh
Q psy13262         58 TRYLCVSKTESLFQIDY-IVENICIINEK-ETPPDGFCLIARTLDSDQGQICER--------GGVV--DYKPQQSNNTIF  125 (229)
Q Consensus        58 gRyv~~vk~~~~~~~~g-iV~di~~l~~~-~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v--~l~~l~~~~~~~  125 (229)
                      ..|++.++..++.++++ .+|+-...+.. +..|+ ...+++.....+..+.+.        ...+  ....+....+.+
T Consensus       446 ~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~-l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~~~~l~~~~~~l  524 (765)
T 1ewq_A          446 FGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPE-MKEKEREVYRLEALIRRREEEVFLEVRERAKRQAEALREAARIL  524 (765)
T ss_dssp             TEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             eeEEEEeehHhhhcCCcceEEEEeccCCcEEECHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44888888888777887 77875555544 55555 566655443322222111        1110  112345677889


Q ss_pred             hhhhHHHHHH----hCCCccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEe
Q psy13262        126 SQRNILKDMY----QQGVCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTG  201 (229)
Q Consensus       126 ~~~d~l~~~~----~~~~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltG  201 (229)
                      +++|++.+++    ..++|+|++ +     ..+.+.++|||++.....++++|+.+.        |       ++++|||
T Consensus       525 a~LD~l~s~a~~a~~~~~~~P~~-~-----~~i~i~~~rHP~le~~~~~vl~disl~--------g-------~i~~I~G  583 (765)
T 1ewq_A          525 AELDVYAALAEVAVRYGYVRPRF-G-----DRLQIRAGRHPVVERRTEFVPNDLEMA--------H-------ELVLITG  583 (765)
T ss_dssp             HHHHHHHHHHHHHHHHTCBCCEE-S-----SSEEEEEECCTTGGGTSCCCCEEEEES--------S-------CEEEEES
T ss_pred             HHHHHHHhhHHHHHhCCceeecc-C-----CcEEEEEeECceEccCCceEeeeccCC--------C-------cEEEEEC
Confidence            9999999875    478999999 2     458899999999862246788887776        3       8999999


Q ss_pred             CCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        202 PNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       202 pN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      |||||||||||+++++.+|+|+|.++|
T Consensus       584 pNGsGKSTlLr~iagl~~~~~~G~~vp  610 (765)
T 1ewq_A          584 PNMAGKSTFLRQTALIALLAQVGSFVP  610 (765)
T ss_dssp             CSSSSHHHHHHHHHHHHHHHTTTCCBS
T ss_pred             CCCCChHHHHHHHHhhhhhcccCceee
Confidence            999999999999999999999999875

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.68  E-value=3.5e-17  Score=161.81  Aligned_cols=156  Identities=22%  Similarity=0.273  Sum_probs=102.5

Q ss_pred             cEEEEEeecccc---cCCCcEEEEeEEecccCCCCchhhHHHHhhhhhhhhhhhc--------ceee-e-ecccccccch
Q psy13262         58 TRYLCVSKTESL---FQIDYIVENICIINEKETPPDGFCLIARTLDSDQGQICER--------GGVV-D-YKPQQSNNTI  124 (229)
Q Consensus        58 gRyv~~vk~~~~---~~~~giV~di~~l~~~~~~P~~y~~l~~~~~s~qt~l~e~--------~~~v-~-l~~l~~~~~~  124 (229)
                      |.|+.+.+...+   ....++.++....+.++ .+.....+++.....+..+.+.        ...+ . ...+....+.
T Consensus       520 Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf-~t~el~~l~~~~~~~~~~~~~~e~~i~~~l~~~~~~~~~~l~~~~~~  598 (934)
T 3thx_A          520 GYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKF-TNSKLTSLNEEYTKNKTEYEEAQDAIVKEIVNISSGYVEPMQTLNDV  598 (934)
T ss_dssp             CEEEEECHHHHTTTTTCSSCEEEEEC--CEEE-ECTTHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             eEEEEEEechhhccCCCCCcEEEEcccCeEEE-ECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666543221   12346766644444333 4555555555444332222111        1000 0 1234567888


Q ss_pred             hhhhhHHHHHH----h--CCCccceEecCCCCCceEEeccccCcccCC--CceeeCCeeEecCccceeccCCCCCCCCcE
Q psy13262        125 FSQRNILKDMY----Q--QGVCVPTFLGLEEPHPYISALESLYPCATG--DQTYIPNSTVIGRCKEDVESGGEGNRKPTV  196 (229)
Q Consensus       125 ~~~~d~l~~~~----~--~~~~~P~~~~~~~~~~~i~~~~~~hpll~~--~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~  196 (229)
                      ++++|++.+++    .  +++|+|++.+.+  ...+.+.++|||++..  ...++|||+.+.     +..|       ++
T Consensus       599 la~lD~l~s~A~~a~~~~~~~~rP~~~~~~--~~~i~i~~~rHP~le~~~~~~~v~ndisl~-----~~~g-------~i  664 (934)
T 3thx_A          599 LAQLDAVVSFAHVSNGAPVPYVRPAILEKG--QGRIILKASRHACVEVQDEIAFIPNDVYFE-----KDKQ-------MF  664 (934)
T ss_dssp             HHHHHHHHHHHHHHHTSSSCCBCCEEECTT--SCEEEEEEECCTTTTTC--CCCCCEEEEEE-----TTTB-------CE
T ss_pred             HHHHHHHHHHHHHHHhccCCCcCCeeccCC--CcceEeecCccchhhhcCCceeecccceee-----cCCC-------eE
Confidence            99999998865    2  689999998742  2568999999999963  245777776654     3344       89


Q ss_pred             EEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        197 LLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       197 ~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++||||||||||||||++|++++|+|+|++||
T Consensus       665 ~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vp  696 (934)
T 3thx_A          665 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVP  696 (934)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHHHHTCCBS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHhcCCccc
Confidence            99999999999999999999999999999987

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.83  E-value=2.5e-09  Score=89.28  Aligned_cols=48  Identities=23%  Similarity=0.328  Sum_probs=40.5

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         4 ~l~~~~l--------~~~y~~~~~l~~vsl~i~~G-------e~~~iiG~nGsGKSTLl~~l~   51 (224)
T 2pcj_A            4 ILRAENI--------KKVIRGYEILKGISLSVKKG-------EFVSIIGASGSGKSTLLYILG   51 (224)
T ss_dssp             EEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEEECTTSCHHHHHHHHT
T ss_pred             EEEEEeE--------EEEECCEeeEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4566655        34456677899999999999       999999999999999999984

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.80  E-value=3.8e-09  Score=89.95  Aligned_cols=49  Identities=24%  Similarity=0.380  Sum_probs=41.6

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++++++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         6 ~~l~i~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~liG~nGsGKSTLlk~l~   54 (257)
T 1g6h_A            6 EILRTENI--------VKYFGEFKALDGVSISVNKG-------DVTLIIGPNGSGKSTLINVIT   54 (257)
T ss_dssp             EEEEEEEE--------EEEETTEEEEEEECCEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             cEEEEeee--------EEEECCEeeEeeeEEEEeCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45677665        34457778999999999999       999999999999999999983

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.79  E-value=4.3e-09  Score=90.18  Aligned_cols=49  Identities=27%  Similarity=0.432  Sum_probs=42.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~~l~~~~l--------~~~~~~~~vL~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~l~   58 (266)
T 4g1u_C           10 ALLEASHL--------HYHVQQQALINDVSLHIASG-------EMVAIIGPNGAGKSTLLRLLT   58 (266)
T ss_dssp             CEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECCTTSCHHHHHHHHT
T ss_pred             ceEEEEeE--------EEEeCCeeEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            56777765        34467788999999999999       999999999999999999984

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.79  E-value=4e-09  Score=88.93  Aligned_cols=49  Identities=20%  Similarity=0.293  Sum_probs=41.2

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         5 ~~l~~~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   53 (240)
T 1ji0_A            5 IVLEVQSL--------HVYYGAIHAIKGIDLKVPRG-------QIVTLIGANGAGKTTTLSAIA   53 (240)
T ss_dssp             EEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             ceEEEEeE--------EEEECCeeEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            45666665        33456677899999999999       999999999999999999984

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.78  E-value=4.5e-09  Score=89.84  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=41.1

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus         5 ~~l~i~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~liG~nGsGKSTLlk~l~   53 (262)
T 1b0u_A            5 NKLHVIDL--------HKRYGGHEVLKGVSLQARAG-------DVISIIGSSGSGKSTFLRCIN   53 (262)
T ss_dssp             CCEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             ceEEEeeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            35666665        33457777999999999999       999999999999999999984

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.76  E-value=5.3e-09  Score=90.27  Aligned_cols=49  Identities=20%  Similarity=0.257  Sum_probs=42.0

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        20 ~~l~~~~l--------~~~y~~~~vL~~isl~i~~G-------e~~~liG~NGsGKSTLlk~l~   68 (279)
T 2ihy_A           20 MLIQLDQI--------GRMKQGKTILKKISWQIAKG-------DKWILYGLNGAGKTTLLNILN   68 (279)
T ss_dssp             EEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             ceEEEEeE--------EEEECCEEEEEeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            56777766        34457778999999999999       999999999999999999983

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.76  E-value=6.2e-09  Score=89.20  Aligned_cols=50  Identities=26%  Similarity=0.355  Sum_probs=41.5

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++++++        ...+++...+++++|++++|       ++++|+||||+|||||||+++.
T Consensus        19 ~~l~~~~l--------~~~y~~~~vl~~vsl~i~~G-------e~~~l~G~NGsGKSTLlk~l~G   68 (267)
T 2zu0_C           19 HMLSIKDL--------HVSVEDKAILRGLSLDVHPG-------EVHAIMGPNGSGKSTLSATLAG   68 (267)
T ss_dssp             -CEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            45677665        33456778999999999999       9999999999999999999853

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.76  E-value=5.5e-09  Score=89.09  Aligned_cols=49  Identities=22%  Similarity=0.386  Sum_probs=41.4

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++++++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        14 ~~l~i~~l--------~~~y~~~~vl~~vsl~i~~G-------ei~~l~G~NGsGKSTLlk~l~   62 (256)
T 1vpl_A           14 GAVVVKDL--------RKRIGKKEILKGISFEIEEG-------EIFGLIGPNGAGKTTTLRIIS   62 (256)
T ss_dssp             CCEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             CeEEEEEE--------EEEECCEEEEEeeEEEEcCC-------cEEEEECCCCCCHHHHHHHHh
Confidence            46666665        33456778999999999999       999999999999999999983

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.75  E-value=5e-09  Score=90.30  Aligned_cols=49  Identities=18%  Similarity=0.251  Sum_probs=40.7

Q ss_pred             ceEEeccccCcccCCCceeeCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++++++        ...+++ ...+++++|++++|       ++++|+||||||||||||+++
T Consensus         6 ~~l~i~~l--------s~~y~~~~~~L~~isl~i~~G-------e~~~iiGpnGsGKSTLl~~l~   55 (275)
T 3gfo_A            6 YILKVEEL--------NYNYSDGTHALKGINMNIKRG-------EVTAILGGNGVGKSTLFQNFN   55 (275)
T ss_dssp             EEEEEEEE--------EEECTTSCEEEEEEEEEEETT-------SEEEEECCTTSSHHHHHHHHT
T ss_pred             cEEEEEEE--------EEEECCCCeEEEeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            46777765        334554 45899999999999       999999999999999999983

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.74  E-value=6.4e-09  Score=89.05  Aligned_cols=48  Identities=25%  Similarity=0.395  Sum_probs=41.0

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++        ...+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        24 ~l~i~~l--------~~~y~~~~vL~~vsl~i~~G-------ei~~liG~NGsGKSTLlk~l~   71 (263)
T 2olj_A           24 MIDVHQL--------KKSFGSLEVLKGINVHIREG-------EVVVVIGPSGSGKSTFLRCLN   71 (263)
T ss_dssp             SEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEEcCCCCcHHHHHHHHH
Confidence            5677665        34457778999999999999       999999999999999999983

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.73  E-value=9.1e-09  Score=87.24  Aligned_cols=41  Identities=34%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++-
T Consensus        11 ~~y~~~~vl~~vsl~i~~G-------e~~~l~G~nGsGKSTLlk~l~G   51 (250)
T 2d2e_A           11 ASIDGETILKGVNLVVPKG-------EVHALMGPNGAGKSTLGKILAG   51 (250)
T ss_dssp             EEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEECCEEEEeceEEEEcCC-------CEEEEECCCCCCHHHHHHHHhC
Confidence            3456678999999999999       9999999999999999999954

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.70  E-value=8e-09  Score=85.84  Aligned_cols=47  Identities=23%  Similarity=0.380  Sum_probs=39.4

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++        ...+++ ..+++++|++++|       ++++|+||||+|||||||+++
T Consensus        10 ~l~~~~l--------s~~y~~-~il~~vsl~i~~G-------e~~~iiG~NGsGKSTLlk~l~   56 (214)
T 1sgw_A           10 KLEIRDL--------SVGYDK-PVLERITMTIEKG-------NVVNFHGPNGIGKTTLLKTIS   56 (214)
T ss_dssp             EEEEEEE--------EEESSS-EEEEEEEEEEETT-------CCEEEECCTTSSHHHHHHHHT
T ss_pred             eEEEEEE--------EEEeCC-eEEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4566655        334566 8999999999999       999999999999999999983

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.69  E-value=1.4e-08  Score=90.76  Aligned_cols=49  Identities=20%  Similarity=0.321  Sum_probs=41.6

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++++++        ...+++...+++++|++++|       ++++|+||||||||||||+++.
T Consensus         4 ~l~i~~l--------s~~y~~~~~L~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG   52 (359)
T 3fvq_A            4 ALHIGHL--------SKSFQNTPVLNDISLSLDPG-------EILFIIGASGCGKTTLLRCLAG   52 (359)
T ss_dssp             CEEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEEeE--------EEEECCEEEEEeeEEEEcCC-------CEEEEECCCCchHHHHHHHHhc
Confidence            4566655        44567788999999999999       9999999999999999999953

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.68  E-value=9.6e-09  Score=86.36  Aligned_cols=35  Identities=23%  Similarity=0.480  Sum_probs=32.6

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||||||||||+++
T Consensus        18 ~~~L~~isl~i~~G-------e~~~iiG~nGsGKSTLl~~l~   52 (235)
T 3tif_A           18 IYALKNVNLNIKEG-------EFVSIMGPSGSGKSTMLNIIG   52 (235)
T ss_dssp             EEEEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             eeeEEeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            35899999999999       999999999999999999984

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.68  E-value=1.2e-08  Score=86.82  Aligned_cols=40  Identities=28%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             eeeC-CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIP-NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp-~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++ +...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        12 ~~y~~~~~vl~~isl~i~~G-------e~~~l~G~nGsGKSTLl~~l~   52 (253)
T 2nq2_C           12 FYYQAENFLFQQLNFDLNKG-------DILAVLGQNGCGKSTLLDLLL   52 (253)
T ss_dssp             EEETTTTEEEEEEEEEEETT-------CEEEEECCSSSSHHHHHHHHT
T ss_pred             EEeCCCCeEEEEEEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            3345 667899999999999       999999999999999999983

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.67  E-value=1.4e-08  Score=85.96  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=33.4

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        21 ~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   56 (247)
T 2ff7_A           21 SPVILDNINLSIKQG-------EVIGIVGRSGSGKSTLTKLIQ   56 (247)
T ss_dssp             SCEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             CcceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            457899999999999       999999999999999999983

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.64  E-value=1.3e-08  Score=85.79  Aligned_cols=36  Identities=22%  Similarity=0.498  Sum_probs=33.2

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        14 ~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   49 (243)
T 1mv5_A           14 SEQILRDISFEAQPN-------SIIAFAGPSGGGKSTIFSLLE   49 (243)
T ss_dssp             SSCSEEEEEEEECTT-------EEEEEECCTTSSHHHHHHHHT
T ss_pred             CCceEEEeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            456899999999999       999999999999999999984

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.63  E-value=1.4e-08  Score=85.37  Aligned_cols=36  Identities=17%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        17 ~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   52 (237)
T 2cbz_A           17 DPPTLNGITFSIPEG-------ALVAVVGQVGCGKSSLLSALL   52 (237)
T ss_dssp             SCCSEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             CCceeeeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            356899999999999       999999999999999999983

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.63  E-value=2.5e-08  Score=89.68  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=37.5

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++....+++++|++++|       ++++|+||||||||||||+++-
T Consensus        10 ~~~yg~~~~L~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG   51 (381)
T 3rlf_A           10 TKAWGEVVVSKDINLDIHEG-------EFVVFVGPSGCGKSTLLRMIAG   51 (381)
T ss_dssp             EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCEEEEeeeEEEECCC-------CEEEEEcCCCchHHHHHHHHHc
Confidence            44567788999999999999       9999999999999999999953

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.63  E-value=1.6e-08  Score=86.89  Aligned_cols=48  Identities=31%  Similarity=0.344  Sum_probs=39.5

Q ss_pred             eEEeccccCcccCCCceeeCC---eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPN---STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~---~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++.++        ...+++   ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        16 ~l~~~~l--------~~~y~~~~~~~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLlk~l~   66 (271)
T 2ixe_A           16 LVKFQDV--------SFAYPNHPNVQVLQGLTFTLYPG-------KVTALVGPNGSGKSTVAALLQ   66 (271)
T ss_dssp             CEEEEEE--------EECCTTCTTSCCEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEEEE--------EEEeCCCCCceeeEeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            5677665        233444   56899999999999       999999999999999999983

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.63  E-value=2.3e-08  Score=85.56  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        20 ~~vl~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~i~   54 (266)
T 2yz2_A           20 KKALENVSLVINEG-------ECLLVAGNTGSGKSTLLQIVA   54 (266)
T ss_dssp             EEEEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             cceeeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            46899999999999       999999999999999999983

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.61  E-value=1.9e-08  Score=84.17  Aligned_cols=36  Identities=19%  Similarity=0.387  Sum_probs=33.1

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        20 ~~~il~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   55 (229)
T 2pze_A           20 GTPVLKDINFKIERG-------QLLAVAGSTGAGKTSLLMMIM   55 (229)
T ss_dssp             SCCSEEEEEEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             CceeeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            356899999999999       999999999999999999983

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.59  E-value=3.6e-08  Score=88.03  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|.||||||||||||+++-
T Consensus        11 ~~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG   51 (359)
T 2yyz_A           11 KYFGKVKAVDGVSFEVKDG-------EFVALLGPSGCGKTTTLLMLAG   51 (359)
T ss_dssp             EEETTEEEEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEECCEEEEeeeEEEEcCC-------CEEEEEcCCCchHHHHHHHHHC
Confidence            3456677899999999999       9999999999999999999953

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.59  E-value=2.5e-08  Score=88.87  Aligned_cols=49  Identities=18%  Similarity=0.307  Sum_probs=40.5

Q ss_pred             ceEEeccccCcccCCCceee-CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYI-PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~v-p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+++.++        ...+ ++...+++++|++++|       ++++|+||||||||||||+++
T Consensus        13 ~~l~~~~l--------~~~y~g~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~ia   62 (355)
T 1z47_A           13 MTIEFVGV--------EKIYPGGARSVRGVSFQIREG-------EMVGLLGPSGSGKTTILRLIA   62 (355)
T ss_dssp             EEEEEEEE--------EECCTTSTTCEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEE--------EEEEcCCCEEEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            46666665        3344 5556899999999999       999999999999999999984

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.58  E-value=4.3e-08  Score=87.92  Aligned_cols=41  Identities=24%  Similarity=0.418  Sum_probs=36.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++...+++++|++++|       ++++|.||||||||||||+++-
T Consensus        11 ~~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG   51 (372)
T 1g29_1           11 KVFGEVTAVREMSLEVKDG-------EFMILLGPSGCGKTTTLRMIAG   51 (372)
T ss_dssp             EEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHHT
T ss_pred             EEECCEEEEeeeEEEEcCC-------CEEEEECCCCcHHHHHHHHHHc
Confidence            3456677899999999999       9999999999999999999953

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.57  E-value=4.5e-08  Score=87.79  Aligned_cols=41  Identities=27%  Similarity=0.465  Sum_probs=36.4

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++...+++++|+++.|       ++++|+||||||||||||+++
T Consensus        18 ~~~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~ia   58 (372)
T 1v43_A           18 TKRFGNFTAVNKLNLTIKDG-------EFLVLLGPSGCGKTTTLRMIA   58 (372)
T ss_dssp             EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCEEEEeeeEEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence            33456677899999999999       999999999999999999985

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.56  E-value=4.4e-08  Score=87.56  Aligned_cols=40  Identities=25%  Similarity=0.382  Sum_probs=35.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++...+++++|++++|       ++++|.||||||||||||+++-
T Consensus        12 ~y~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG   51 (362)
T 2it1_A           12 KFGNFTALNNINLKIKDG-------EFMALLGPSGSGKSTLLYTIAG   51 (362)
T ss_dssp             ESSSSEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred             EECCEEEEEeeEEEECCC-------CEEEEECCCCchHHHHHHHHhc
Confidence            346667899999999999       9999999999999999999953

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.56  E-value=3.2e-08  Score=84.67  Aligned_cols=34  Identities=26%  Similarity=0.537  Sum_probs=31.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|+++ |       ++++|+||||+|||||||+++
T Consensus        18 ~~il~~vsl~i~-G-------e~~~i~G~NGsGKSTLlk~l~   51 (263)
T 2pjz_A           18 RFSLENINLEVN-G-------EKVIILGPNGSGKTTLLRAIS   51 (263)
T ss_dssp             EEEEEEEEEEEC-S-------SEEEEECCTTSSHHHHHHHHT
T ss_pred             ceeEEeeeEEEC-C-------EEEEEECCCCCCHHHHHHHHh
Confidence            568999999999 9       999999999999999999984

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.55  E-value=5e-08  Score=87.24  Aligned_cols=51  Identities=20%  Similarity=0.269  Sum_probs=40.9

Q ss_pred             CceEEeccccCcccCCCceeeCC----eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        151 HPYISALESLYPCATGDQTYIPN----STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       151 ~~~i~~~~~~hpll~~~~~~vp~----~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++++++        ...++.    ...+++++|++++|       ++++|+||||||||||||+++.
T Consensus        22 ~~mi~v~~l--------s~~y~~~~~~~~aL~~vsl~i~~G-------ei~~IiGpnGaGKSTLlr~i~G   76 (366)
T 3tui_C           22 KHMIKLSNI--------TKVFHQGTRTIQALNNVSLHVPAG-------QIYGVIGASGAGKSTLIRCVNL   76 (366)
T ss_dssp             -CCEEEEEE--------EEEEECSSSEEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHHT
T ss_pred             CceEEEEeE--------EEEeCCCCCCeEEEEeeEEEEcCC-------CEEEEEcCCCchHHHHHHHHhc
Confidence            357788776        333332    35899999999999       9999999999999999999853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.54  E-value=3.5e-08  Score=84.19  Aligned_cols=34  Identities=29%  Similarity=0.283  Sum_probs=32.0

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++
T Consensus        34 ~vl~~vsl~i~~G-------e~~~i~G~nGsGKSTLl~~l~   67 (260)
T 2ghi_A           34 RTLKSINFFIPSG-------TTCALVGHTGSGKSTIAKLLY   67 (260)
T ss_dssp             CSEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             ceeEeeEEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            5799999999999       999999999999999999984

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.53  E-value=3.9e-08  Score=87.44  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=34.7

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++. .+++++|++++|       ++++|+||||||||||||+++-
T Consensus        10 ~y~~~-~l~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG   48 (348)
T 3d31_A           10 KWKNF-SLDNLSLKVESG-------EYFVILGPTGAGKTLFLELIAG   48 (348)
T ss_dssp             ECSSC-EEEEEEEEECTT-------CEEEEECCCTHHHHHHHHHHHT
T ss_pred             EECCE-EEeeeEEEEcCC-------CEEEEECCCCccHHHHHHHHHc
Confidence            34555 899999999999       9999999999999999999953

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.50  E-value=9.2e-08  Score=83.58  Aligned_cols=48  Identities=27%  Similarity=0.281  Sum_probs=39.6

Q ss_pred             eEEeccccCcccCCCceee-CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYI-PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~v-p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++        ...+ +....|++++|++++|       ++++|+||||+|||||||+++
T Consensus        53 ~i~~~~v--------s~~y~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTLl~ll~  101 (306)
T 3nh6_A           53 RIEFENV--------HFSYADGRETLQDVSFTVMPG-------QTLALVGPSGAGKSTILRLLF  101 (306)
T ss_dssp             CEEEEEE--------EEESSTTCEEEEEEEEEECTT-------CEEEEESSSCHHHHHHHHHHT
T ss_pred             eEEEEEE--------EEEcCCCCceeeeeeEEEcCC-------CEEEEECCCCchHHHHHHHHH
Confidence            4677665        2234 3567899999999999       999999999999999999883

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.48  E-value=7.5e-08  Score=86.84  Aligned_cols=49  Identities=14%  Similarity=0.176  Sum_probs=40.5

Q ss_pred             eEEeccccCcccCCCceee--CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYI--PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~v--p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++++++        ...+  .+...+++++|++++|       ++++|+||||||||||||+++-
T Consensus        19 ~i~~~~l--------~~~y~~~~~~~L~~vsl~i~~G-------e~~~llGpsGsGKSTLLr~iaG   69 (390)
T 3gd7_A           19 QMTVKDL--------TAKYTEGGNAILENISFSISPG-------QRVGLLGRTGSGKSTLLSAFLR   69 (390)
T ss_dssp             CEEEEEE--------EEESSSSSCCSEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHHHT
T ss_pred             eEEEEEE--------EEEecCCCeEEeeceeEEEcCC-------CEEEEECCCCChHHHHHHHHhC
Confidence            4677665        3344  3457899999999999       9999999999999999999853

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.48  E-value=3.6e-08  Score=87.79  Aligned_cols=40  Identities=23%  Similarity=0.396  Sum_probs=35.1

Q ss_pred             eeCCee--EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        170 YIPNST--VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       170 ~vp~~~--~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++..  .+++++|++++|       ++++|+||||||||||||+++-
T Consensus        12 ~y~~~~~~vl~~vsl~i~~G-------e~~~llGpnGsGKSTLLr~iaG   53 (353)
T 1oxx_K           12 VFKKGKVVALDNVNINIENG-------ERFGILGPSGAGKTTFMRIIAG   53 (353)
T ss_dssp             EEGGGTEEEEEEEEEEECTT-------CEEEEECSCHHHHHHHHHHHHT
T ss_pred             EECCEeeeeEeceEEEECCC-------CEEEEECCCCCcHHHHHHHHhC
Confidence            345555  899999999999       9999999999999999999853

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.44  E-value=7.3e-08  Score=81.76  Aligned_cols=34  Identities=38%  Similarity=0.671  Sum_probs=31.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++++|       ++++|+||||+|||||||+++
T Consensus        14 ~vl~~vsl~i~~G-------e~~~liG~NGsGKSTLlk~l~   47 (249)
T 2qi9_C           14 TRLGPLSGEVRAG-------EILHLVGPNGAGKSTLLARMA   47 (249)
T ss_dssp             TTEEEEEEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEeeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            4788999999999       999999999999999999983

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.38  E-value=1.5e-07  Score=78.95  Aligned_cols=38  Identities=16%  Similarity=0.016  Sum_probs=23.2

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ++...+++++|++.++       .+++|+||||+||||++|.++-
T Consensus        10 ~~~~~l~~isl~i~~g-------~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           10 GVDLGTENLYFQSMRP-------FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             -------------CCS-------EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCceeecceeccCCCC-------EEEEEECCCCCCHHHHHHHHHH
Confidence            4556899999999999       9999999999999999999843

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.36  E-value=1.4e-07  Score=81.80  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|++++|       ++++|+||||+|||||||+++
T Consensus        51 ~~vl~~isl~i~~G-------e~~~i~G~NGsGKSTLlk~l~   85 (290)
T 2bbs_A           51 TPVLKDINFKIERG-------QLLAVAGSTGAGKTSLLMMIM   85 (290)
T ss_dssp             CCSEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHHT
T ss_pred             ceEEEeeEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            46799999999999       999999999999999999983

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.34  E-value=2.2e-07  Score=73.45  Aligned_cols=39  Identities=21%  Similarity=0.083  Sum_probs=33.6

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +....+.+++|++++|       ++++|.||||+|||||+|.++-+
T Consensus        18 g~~~~l~~vsl~i~~G-------e~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           18 GKKFAEILLKLHTEKA-------IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             HHHHHHHHHHHCCSSC-------EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHhccccccCCC-------CEEEEECCCCCCHHHHHHHHHHh
Confidence            4455678889999999       99999999999999999999544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.25  E-value=1.5e-06  Score=86.34  Aligned_cols=40  Identities=23%  Similarity=0.326  Sum_probs=36.7

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++...+++++|++++|       ++++|+||||+|||||||+++
T Consensus       443 ~~yg~~~iL~~vsl~I~~G-------e~v~LiGpNGsGKSTLLk~La  482 (986)
T 2iw3_A          443 LAYGAKILLNKTQLRLKRA-------RRYGICGPNGCGKSTLMRAIA  482 (986)
T ss_dssp             EEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHH
T ss_pred             EEECCEEeEecceEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4457778999999999999       999999999999999999996

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.22  E-value=4.2e-07  Score=75.21  Aligned_cols=34  Identities=29%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++|++.+|       ++++|+||||+||||++|.++
T Consensus        15 ~~~~~~sl~v~~G-------~ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           15 QTQGPGSMLKSVG-------VILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             -------CCEECC-------CEEEEECSCC----CHHHHHH
T ss_pred             cccCCCCcccCCC-------CEEEEECCCCCCHHHHHHHHH
Confidence            4567888999999       999999999999999999986

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.20  E-value=9.5e-07  Score=83.26  Aligned_cols=35  Identities=20%  Similarity=0.334  Sum_probs=32.8

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       +.++|+||||+||||++|.++
T Consensus       356 ~~~l~~i~l~i~~G-------~~~~ivG~sGsGKSTll~~l~  390 (582)
T 3b5x_A          356 KPALSHVSFSIPQG-------KTVALVGRSGSGKSTIANLFT  390 (582)
T ss_pred             ccccccceEEECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            56899999999999       999999999999999999984

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.15  E-value=1e-06  Score=83.08  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++++++++|       ++++|+||||+|||||+|+++
T Consensus       356 ~~~l~~v~~~i~~G-------~~~~ivG~sGsGKSTLl~~l~  390 (582)
T 3b60_A          356 VPALRNINLKIPAG-------KTVALVGRSGSGKSTIASLIT  390 (582)
T ss_dssp             CCSEEEEEEEECTT-------CEEEEEECTTSSHHHHHHHHT
T ss_pred             CccccceeEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            56899999999999       999999999999999999983

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.14  E-value=6.7e-07  Score=78.07  Aligned_cols=36  Identities=19%  Similarity=0.217  Sum_probs=32.7

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...|+++++++++|       ++++|+||||+|||||+|++.-
T Consensus       113 ~~vL~~vsl~i~~G-------e~vaIvGpsGsGKSTLl~lL~g  148 (305)
T 2v9p_A          113 INALKLWLKGIPKK-------NCLAFIGPPNTGKSMLCNSLIH  148 (305)
T ss_dssp             HHHHHHHHHTCTTC-------SEEEEECSSSSSHHHHHHHHHH
T ss_pred             hhhhccceEEecCC-------CEEEEECCCCCcHHHHHHHHhh
Confidence            45788999999999       9999999999999999999843

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.13  E-value=2.5e-06  Score=79.88  Aligned_cols=34  Identities=26%  Similarity=0.406  Sum_probs=30.4

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+..++|++.+|       ++++|+||||+|||||||+++
T Consensus       300 ~~l~~~~~~i~~G-------e~~~i~G~NGsGKSTLlk~l~  333 (538)
T 1yqt_A          300 FRLEVEPGEIKKG-------EVIGIVGPNGIGKTTFVKMLA  333 (538)
T ss_dssp             EEEEECCEEEETT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEeCccccCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            5677778888999       999999999999999999984

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.12  E-value=8.9e-07  Score=83.78  Aligned_cols=35  Identities=26%  Similarity=0.461  Sum_probs=32.7

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +...++++++++++|       ++++|+||||+||||++|++
T Consensus       367 ~~~~l~~isl~i~~G-------~~~~ivG~sGsGKSTll~~l  401 (598)
T 3qf4_B          367 KKPVLKDITFHIKPG-------QKVALVGPTGSGKTTIVNLL  401 (598)
T ss_dssp             SSCSCCSEEEECCTT-------CEEEEECCTTSSTTHHHHHH
T ss_pred             CCccccceEEEEcCC-------CEEEEECCCCCcHHHHHHHH
Confidence            456899999999999       99999999999999999988

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.10  E-value=2.6e-06  Score=80.81  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=30.0

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+..++|++.+|       ++++|+||||+|||||||+++
T Consensus       370 ~~l~~~~~~v~~G-------ei~~i~G~NGsGKSTLlk~l~  403 (607)
T 3bk7_A          370 FKLEVEPGEIRKG-------EVIGIVGPNGIGKTTFVKMLA  403 (607)
T ss_dssp             CEEEECCEEEETT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEecccccCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4567777778899       999999999999999999984

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.09  E-value=8.1e-07  Score=88.26  Aligned_cols=35  Identities=26%  Similarity=0.328  Sum_probs=32.4

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++++|+++.|       ++++|+||||+|||||||+++
T Consensus       686 ~~iL~dVSl~I~~G-------eivaIiGpNGSGKSTLLklLa  720 (986)
T 2iw3_A          686 KPQITDINFQCSLS-------SRIAVIGPNGAGKSTLINVLT  720 (986)
T ss_dssp             SCSEEEEEEEEETT-------CEEEECSCCCHHHHHHHHHHT
T ss_pred             ceeeeccEEEEcCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            35789999999999       999999999999999999983

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.04  E-value=2.9e-06  Score=79.44  Aligned_cols=37  Identities=35%  Similarity=0.410  Sum_probs=32.0

Q ss_pred             eCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++.. ..+.+++ .+.+|       ++++|+||||+|||||||+++
T Consensus        31 yg~~~~~l~~vs-~i~~G-------e~~~LvG~NGaGKSTLlk~l~   68 (538)
T 1yqt_A           31 YGVNAFVLYRLP-VVKEG-------MVVGIVGPNGTGKSTAVKILA   68 (538)
T ss_dssp             CSTTCCEEECCC-CCCTT-------SEEEEECCTTSSHHHHHHHHH
T ss_pred             ECCccccccCcC-cCCCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            4444 4788888 88899       999999999999999999984

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.02  E-value=1.5e-06  Score=81.76  Aligned_cols=34  Identities=24%  Similarity=0.467  Sum_probs=31.9

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...++++++++++|       +.++|+||||+||||++|++
T Consensus       354 ~~~l~~isl~i~~G-------~~~~ivG~sGsGKSTll~~l  387 (578)
T 4a82_A          354 APILKDINLSIEKG-------ETVAFVGMSGGGKSTLINLI  387 (578)
T ss_dssp             CCSEEEEEEEECTT-------CEEEEECSTTSSHHHHHTTT
T ss_pred             CcceeeeEEEECCC-------CEEEEECCCCChHHHHHHHH
Confidence            46899999999999       99999999999999999987

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.02  E-value=3.4e-06  Score=80.04  Aligned_cols=37  Identities=32%  Similarity=0.398  Sum_probs=32.0

Q ss_pred             eCCe-eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNS-TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~-~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++.. ..+.+++ .+++|       ++++|+||||+|||||||+++
T Consensus       101 yg~~~~~l~~vs-~i~~G-------e~~~LiG~NGsGKSTLlkiL~  138 (607)
T 3bk7_A          101 YGVNAFVLYRLP-IVKDG-------MVVGIVGPNGTGKTTAVKILA  138 (607)
T ss_dssp             CSTTCCEEECCC-CCCTT-------SEEEEECCTTSSHHHHHHHHT
T ss_pred             ECCCCeeeCCCC-CCCCC-------CEEEEECCCCChHHHHHHHHh
Confidence            3444 4788898 88898       999999999999999999983

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.01  E-value=4.8e-06  Score=77.92  Aligned_cols=34  Identities=26%  Similarity=0.305  Sum_probs=29.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.+...++++++|       ++++|+||||+|||||||+++
T Consensus       282 ~~l~~~~~~i~~G-------ei~~i~G~nGsGKSTLl~~l~  315 (538)
T 3ozx_A          282 FQLVVDNGEAKEG-------EIIGILGPNGIGKTTFARILV  315 (538)
T ss_dssp             EEEEECCEEEETT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEeccceECCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            5566667788899       999999999999999999983

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.98  E-value=2.5e-06  Score=80.58  Aligned_cols=34  Identities=26%  Similarity=0.444  Sum_probs=32.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...+++++|++++|       +.++|+||||+||||++|++
T Consensus       356 ~~~l~~isl~i~~G-------e~~~ivG~sGsGKSTll~~l  389 (587)
T 3qf4_A          356 DPVLSGVNFSVKPG-------SLVAVLGETGSGKSTLMNLI  389 (587)
T ss_dssp             CCSEEEEEEEECTT-------CEEEEECSSSSSHHHHHHTT
T ss_pred             CcceeceEEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            46899999999999       99999999999999999987

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.93  E-value=6.2e-06  Score=65.26  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+|+||||+||||+|+.|.++
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~   49 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFV   49 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            49999999999999999999665

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.88  E-value=7.2e-06  Score=77.84  Aligned_cols=39  Identities=38%  Similarity=0.428  Sum_probs=30.8

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .|-++.+.+..++ .+.+|       ++++|+||||+|||||||+++
T Consensus        86 ~Y~~~~~~l~~l~-~~~~G-------ei~~LvGpNGaGKSTLLkiL~  124 (608)
T 3j16_B           86 RYSANSFKLHRLP-TPRPG-------QVLGLVGTNGIGKSTALKILA  124 (608)
T ss_dssp             ECSTTSCEEECCC-CCCTT-------SEEEEECCTTSSHHHHHHHHH
T ss_pred             EECCCceeecCCC-CCCCC-------CEEEEECCCCChHHHHHHHHh
Confidence            3445556666655 46677       999999999999999999984

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.88  E-value=7e-06  Score=66.29  Aligned_cols=37  Identities=16%  Similarity=0.062  Sum_probs=21.8

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++..+.+++|.+.++       +.++|+||+|+||||+.|.++
T Consensus        10 ~~~~~~~~~~~~~~~~-------~~i~l~G~~GsGKsTl~~~La   46 (199)
T 3vaa_A           10 GVDLGTENLYFQSNAM-------VRIFLTGYMGAGKTTLGKAFA   46 (199)
T ss_dssp             --------------CC-------CEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCCCCCceeEecCCC-------CEEEEEcCCCCCHHHHHHHHH
Confidence            5677888999999888       899999999999999999986

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=97.87  E-value=6.8e-06  Score=76.93  Aligned_cols=40  Identities=28%  Similarity=0.287  Sum_probs=31.7

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..|-+|.+.+.++.. +++|       ++++|+||||+|||||||+++
T Consensus         7 ~~~~~~~f~l~~l~~-~~~G-------ei~gLiGpNGaGKSTLlkiL~   46 (538)
T 3ozx_A            7 HRYKVNGFKLFGLPT-PKNN-------TILGVLGKNGVGKTTVLKILA   46 (538)
T ss_dssp             EESSTTSCEEECCCC-CCTT-------EEEEEECCTTSSHHHHHHHHT
T ss_pred             eecCCCceeecCCCC-CCCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            357788888876542 3445       899999999999999999983

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.87  E-value=5e-06  Score=70.77  Aligned_cols=32  Identities=25%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.+++  +.+|       +.++|+||||+||||+|+.+.-
T Consensus        16 vl~~i~--i~~g-------~~v~i~Gp~GsGKSTll~~l~g   47 (261)
T 2eyu_A           16 KVLELC--HRKM-------GLILVTGPTGSGKSTTIASMID   47 (261)
T ss_dssp             HHHHGG--GCSS-------EEEEEECSTTCSHHHHHHHHHH
T ss_pred             HHHHHh--hCCC-------CEEEEECCCCccHHHHHHHHHH
Confidence            455665  5666       8999999999999999999843

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.87  E-value=4.4e-06  Score=76.07  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=31.2

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcE--EEEEeCCCCChHHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTV--LLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~--~~ltGpN~~GKStlLk~i~l  216 (229)
                      +++.. +.++++++++|       ..  ++|+||||+||||||++++.
T Consensus        25 y~~~~-L~~vsl~i~~G-------ei~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           25 FDSLP-DQLVNKSVSQG-------FCFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             CC--C-HHHHHHSCC-C-------CEEEEEEECSTTSSSHHHHHHHHT
T ss_pred             ECCee-cCCCceEecCC-------CeeEEEEECCCCCCHHHHHHHHhC
Confidence            34445 89999999999       88  99999999999999999843

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.86  E-value=5.5e-06  Score=79.23  Aligned_cols=30  Identities=23%  Similarity=0.417  Sum_probs=28.3

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM  211 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL  211 (229)
                      ..|++++|++++|       ++++|+||||+||||||
T Consensus        32 ~~L~~vsl~i~~G-------e~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           32 HNLKNIDVEIPRG-------KLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTCCSEEEEEETT-------SEEEEECSTTSSHHHHH
T ss_pred             cceeccEEEECCC-------CEEEEECCCCCCHHHHh
Confidence            4689999999999       99999999999999997

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.85  E-value=1e-05  Score=70.33  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=27.4

Q ss_pred             cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .++++++.+|       ++++|+||||+||||+++.++..
T Consensus        91 ~~l~~~~~~g-------~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A           91 TELQLGFRKP-------AVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             CSCCCCSSSC-------EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccccccCCC-------cEEEEEcCCCCCHHHHHHHHHHH
Confidence            3566667677       99999999999999999998543

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.85  E-value=4.3e-06  Score=74.13  Aligned_cols=36  Identities=17%  Similarity=0.067  Sum_probs=31.6

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ....++++ +.+.+|       ++++|.||||+|||||||+++-
T Consensus        58 g~~ald~l-l~i~~G-------q~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           58 GVRAIDGL-LTCGIG-------QRIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             SCHHHHHH-SCEETT-------CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEee-eeecCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            34578888 999999       9999999999999999999843

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.84  E-value=1.1e-05  Score=65.81  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++|+||||+|||||+++++..
T Consensus        26 ~~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           26 AITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            99999999999999999999653

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.84  E-value=4.7e-06  Score=79.75  Aligned_cols=33  Identities=24%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++|++++|       ++++|+|||||||||||+.+.
T Consensus       337 ~L~~vsl~I~~G-------e~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLG-------TFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETT-------SEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCC-------CEEEEEeeCCCCHHHHHHHHH
Confidence            488999999999       999999999999999998763

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.83  E-value=7.6e-06  Score=76.10  Aligned_cols=43  Identities=14%  Similarity=0.057  Sum_probs=35.0

Q ss_pred             eeeCCeeEecCccc-eeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKE-DVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       169 ~~vp~~~~l~~~~~-~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .+......|+++++ .+.+|       ++++|+||||+|||||++++.+.-
T Consensus        20 ~~~~g~~~Ld~i~~G~i~~G-------e~~~l~G~nGsGKSTL~~~~ll~G   63 (525)
T 1tf7_A           20 KMRTMIEGFDDISHGGLPIG-------RSTLVSGTSGTGKTLFSIQFLYNG   63 (525)
T ss_dssp             EECCCCTTHHHHTTSSEETT-------SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cccCCchhHHHhcCCCCCCC-------eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            34334457889999 99999       999999999999999999964433

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.79  E-value=6.8e-06  Score=75.53  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=29.0

Q ss_pred             CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH-HHHH
Q psy13262        179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL-GLIT  218 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i-~l~~  218 (229)
                      ++++++++|       ++++|+||||+|||||||++ |++.
T Consensus       130 ~vsl~i~~G-------e~v~IvGpnGsGKSTLlr~L~Gl~~  163 (460)
T 2npi_A          130 KIRMSNFEG-------PRVVIVGGSQTGKTSLSRTLCSYAL  163 (460)
T ss_dssp             HHHHHSSSC-------CCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred             cCceEeCCC-------CEEEEECCCCCCHHHHHHHHhCccc
Confidence            588888888       99999999999999999998 5443

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.74  E-value=5.1e-06  Score=74.34  Aligned_cols=35  Identities=29%  Similarity=0.470  Sum_probs=28.4

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .+.+++|++.+|        +++|+||||+||||+|+.|.++.
T Consensus        50 ~l~~v~l~~~~G--------~~~lvG~NGaGKStLl~aI~~l~   84 (415)
T 4aby_A           50 TITQLELELGGG--------FCAFTGETGAGKSIIVDALGLLL   84 (415)
T ss_dssp             TEEEEEEECCSS--------EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ceeeEEEecCCC--------cEEEECCCCCCHHHHHHHHHHHh
Confidence            456677776555        99999999999999999986653

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.74  E-value=1.2e-05  Score=68.87  Aligned_cols=44  Identities=27%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .|+++++.+.+|       ++++|+||||+|||||+++++..... +.|-+|
T Consensus        24 ~Ld~i~~~l~~G-------~~~~i~G~~G~GKTTl~~~ia~~~~~-~~G~~v   67 (296)
T 1cr0_A           24 GINDKTLGARGG-------EVIMVTSGSGMGKSTFVRQQALQWGT-AMGKKV   67 (296)
T ss_dssp             THHHHHCSBCTT-------CEEEEEESTTSSHHHHHHHHHHHHHH-TSCCCE
T ss_pred             HHHHHhcCCCCC-------eEEEEEeCCCCCHHHHHHHHHHHHHH-HcCCeE
Confidence            466777788888       99999999999999999998765432 336444

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.72  E-value=4e-06  Score=73.73  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+.++++.+++|       +.++|+||||+|||||||.++
T Consensus       160 ~l~~l~~~i~~g-------~~v~i~G~~GsGKTTll~~l~  192 (330)
T 2pt7_A          160 AISAIKDGIAIG-------KNVIVCGGTGSGKTTYIKSIM  192 (330)
T ss_dssp             HHHHHHHHHHHT-------CCEEEEESTTSCHHHHHHHGG
T ss_pred             HHhhhhhhccCC-------CEEEEECCCCCCHHHHHHHHh
Confidence            567788899888       899999999999999999883

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.71  E-value=2e-05  Score=74.74  Aligned_cols=39  Identities=28%  Similarity=0.439  Sum_probs=30.2

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|++..|.-  .+.++++|+||||+|||||||+++
T Consensus       361 ~~l~~vsl~v~~G~~--~~GEiv~iiG~NGsGKSTLlk~l~  399 (608)
T 3j16_B          361 KTQGDFVLNVEEGEF--SDSEILVMMGENGTGKTTLIKLLA  399 (608)
T ss_dssp             EECSSCEEEECCEEC--CTTCEEEEESCTTSSHHHHHHHHH
T ss_pred             cccCceEEEEecCcc--ccceEEEEECCCCCcHHHHHHHHh
Confidence            467788888876610  012689999999999999999984

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.71  E-value=2.2e-05  Score=72.65  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=27.9

Q ss_pred             cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++|++..|       .+++|+||||+||||+++.++.+
T Consensus       284 ~~Isl~i~~G-------eVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          284 EPLNVEGKAP-------FVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             CCCCCCSCTT-------EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceeeccCC-------eEEEEECCCcccHHHHHHHHHHH
Confidence            4677777777       99999999999999999998543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.71  E-value=2.3e-05  Score=69.75  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=26.9

Q ss_pred             CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++++++++       ++++|+||||+||||+++.++..
T Consensus       149 ~l~l~~~~g-------~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          149 ELQLGFRKP-------AVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             SCCCCSSSS-------EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcceecCCC-------eEEEEEcCCCChHHHHHHHHHhh
Confidence            466666677       99999999999999999998543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.70  E-value=8.7e-06  Score=74.34  Aligned_cols=35  Identities=20%  Similarity=0.138  Sum_probs=31.3

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++++ +.+.+|       ++++|.||||+||||||++++-
T Consensus       145 ~~vld~v-l~i~~G-------q~~~IvG~sGsGKSTLl~~Iag  179 (438)
T 2dpy_A          145 VRAINAL-LTVGRG-------QRMGLFAGSGVGKSVLLGMMAR  179 (438)
T ss_dssp             CHHHHHH-SCCBTT-------CEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEeee-EEecCC-------CEEEEECCCCCCHHHHHHHHhc
Confidence            4578889 999999       9999999999999999999854

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.70  E-value=9.9e-06  Score=72.00  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=28.6

Q ss_pred             cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++.+++|       +.++|+||||+||||+||.+.
T Consensus       166 ~~l~~~i~~G-------~~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          166 SFLRRAVQLE-------RVIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             HHHHHHHHTT-------CCEEEEESSSSCHHHHHHHHH
T ss_pred             HHHHHHHhcC-------CEEEEECCCCCCHHHHHHHHH
Confidence            7788999999       899999999999999999884

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.69  E-value=1.9e-05  Score=62.51  Aligned_cols=32  Identities=13%  Similarity=-0.045  Sum_probs=24.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.++|+||||+||||+++.++-... ...|..+
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~~~~~-~~~g~~~   70 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATLKAIY-EKKGIRG   70 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHHHHHH-HHSCCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH-HHcCCeE
Confidence            8999999999999999998854332 2345443

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.67  E-value=2e-05  Score=69.75  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=27.8

Q ss_pred             ecCccceecc--CCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        177 IGRCKEDVES--GGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       177 l~~~~~~~~~--~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+++.+.+  +       +.++|+||||+|||||+|.++-
T Consensus       158 ~~~v~~~v~~~lg-------~k~~IvG~nGsGKSTLlk~L~g  192 (365)
T 1lw7_A          158 WKFIPKEARPFFA-------KTVAILGGESSGKSVLVNKLAA  192 (365)
T ss_dssp             GGGSCTTTGGGTC-------EEEEEECCTTSHHHHHHHHHHH
T ss_pred             hhhCCHHHHHhhh-------CeEEEECCCCCCHHHHHHHHHH
Confidence            3457777777  7       8999999999999999999843

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.67  E-value=2.5e-05  Score=79.88  Aligned_cols=33  Identities=36%  Similarity=0.473  Sum_probs=31.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+++++|++++|       ++++|+||||+||||++|++
T Consensus      1047 ~~l~~vsl~i~~G-------e~v~ivG~sGsGKSTl~~~l 1079 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKG-------QTLALVGSSGCGKSTVVQLL 1079 (1284)
T ss_dssp             CSBSSCCEEECSS-------SEEEEECSSSTTHHHHHHHH
T ss_pred             eeecceeEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            5899999999999       99999999999999999988

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.66  E-value=2.4e-05  Score=72.30  Aligned_cols=34  Identities=29%  Similarity=0.180  Sum_probs=26.9

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+.+++|++++        ++++|+||||+|||||||+++.+
T Consensus        19 ~l~~vsl~i~~--------e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           19 GFFARTFDFDE--------LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             TEEEEEEECCS--------SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccceEEEEcc--------ceEEEECCCCCcHHHHHHHHhcC
Confidence            45666666633        59999999999999999999543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.66  E-value=1.8e-05  Score=80.91  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=31.7

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..|++++|++++|       +.++|+||||+||||++|.+
T Consensus       404 ~vL~~isl~i~~G-------~~~~ivG~sGsGKSTl~~ll  436 (1284)
T 3g5u_A          404 QILKGLNLKVKSG-------QTVALVGNSGCGKSTTVQLM  436 (1284)
T ss_dssp             CSEEEEEEEECTT-------CEEEEECCSSSSHHHHHHHT
T ss_pred             cceecceEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            6899999999999       99999999999999999987

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.65  E-value=9.9e-06  Score=73.47  Aligned_cols=34  Identities=21%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             eEecCccceeccCCCCCCCCc--------------------EEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPT--------------------VLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~--------------------~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++++++.|       +                    .++|+||||+|||||||++.
T Consensus        37 ~~l~~is~~i~~G-------e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~   90 (413)
T 1tq4_A           37 EILNLIELRMRAG-------NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLR   90 (413)
T ss_dssp             HHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             HHhhhccceecCC-------CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHh
Confidence            4577888999888       6                    99999999999999999884

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.65  E-value=2.7e-05  Score=62.87  Aligned_cols=21  Identities=19%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|+||||+||||++|.++
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            899999999999999999984

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.65  E-value=2.8e-05  Score=67.80  Aligned_cols=21  Identities=33%  Similarity=0.358  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++|.||||||||||+|.++
T Consensus        91 ~ivgI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           91 FIIGVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCchHHHHHHHHH
Confidence            899999999999999999984

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.64  E-value=1.5e-05  Score=69.19  Aligned_cols=22  Identities=32%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++|+||||+||||++|.++-
T Consensus        81 ~iigI~G~~GsGKSTl~~~L~~  102 (308)
T 1sq5_A           81 YIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999998843

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.63  E-value=1.9e-05  Score=69.57  Aligned_cols=36  Identities=25%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...+.++++.+..+       .+++|+||||+||||||+.++-
T Consensus        42 ~~~l~~i~~~~~~g-------~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           42 RDLIDAVLPQTGRA-------IRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             HHHHHHHGGGCCCS-------EEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHhCCcccCCC-------eEEEEECCCCCCHHHHHHHHHH
Confidence            34677788888888       9999999999999999999843

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.62  E-value=5.8e-05  Score=58.61  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+|+||||+||||+|..+.++
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999998764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.56  E-value=4.2e-05  Score=63.68  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++|+||||+||||++|.++
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999987

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.52  E-value=3.9e-05  Score=68.18  Aligned_cols=23  Identities=35%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      ..++|+|||||||||+|+.+ +++
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            79999999999999999987 443

>3tow_A Multivesicular BODY subunit 12B; beta prism, membrane binding domain, negatively charged MEMB protein transport; 1.34A {Homo sapiens}

Probab=97.51  E-value=0.00012  Score=57.19  Aligned_cols=73  Identities=19%  Similarity=0.373  Sum_probs=56.6

Q ss_pred             CCCCeeeEEEeecCCCCCCCeEEEEeeecCccccccccceeeEeeccEEEEEeecccccCCCcEEEEeEEecccCCCCch
Q psy13262         12 DDKPITAIAVIEDIQKCPSGYTVISKTVDQDTDADMWRESAFFLRKTRYLCVSKTESLFQIDYIVENICIINEKETPPDG   91 (229)
Q Consensus        12 ~~~~~t~~~~~~~~~~~p~g~~~is~t~~~d~~a~~~qe~~~~~rkgRyv~~vk~~~~~~~~giV~di~~l~~~~~~P~~   91 (229)
                      ++.+||+++++++++..|.||++|..|.|. .++ .|       | .+++|+- -..++...--|.||.+++....-|.+
T Consensus        61 ~~~VvtDl~vi~~Kd~lP~Gf~~I~~T~dt-~~~-a~-------r-KkrLCvK-~~p~~s~~~AVtDI~i~~ksK~~~~~  129 (152)
T 3tow_A           61 LGNVLVDMKLIDIKDTLPVGFIPIQETVDT-QEV-AF-------R-KKRLCIK-FIPRDSTEAAICDIRIMGRTKQAPPQ  129 (152)
T ss_dssp             GCEEEEEEEEEETTSCCCTTCEECCBCTTT-CCB-CC-------S-SEEEEEE-EEEGGGCSCEEEEEEEEETTCCCCTT
T ss_pred             CCCeEEEEEEEeCCCCCCCCcEEeeccCCc-chh-hh-------c-eeEEEEE-EccCCccceeEEEEEEEecCCCCCCC
Confidence            578999999999999999999999999998 322 22       2 4667763 33445568889999999988666777


Q ss_pred             hhHH
Q psy13262         92 FCLI   95 (229)
Q Consensus        92 y~~l   95 (229)
                      |+.+
T Consensus       130 yt~~  133 (152)
T 3tow_A          130 YTFI  133 (152)
T ss_dssp             EEEE
T ss_pred             ceEE
Confidence            7654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.48  E-value=6.8e-05  Score=66.74  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .+.+|+||||+||||+|+.+.++.
T Consensus        27 g~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           27 GVTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHHhc
Confidence            499999999999999999997654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.47  E-value=5.2e-05  Score=61.12  Aligned_cols=22  Identities=36%  Similarity=0.416  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++|+||||+||||++|.++-
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~   47 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQ   47 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            8999999999999999999843

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.45  E-value=4.3e-05  Score=78.38  Aligned_cols=33  Identities=39%  Similarity=0.512  Sum_probs=31.4

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .+|++++|++++|       ++++|+||+||||||+++.+
T Consensus      1093 ~VL~~isl~I~~G-------e~vaIVG~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A         1093 EILKGLSFSVEPG-------QTLALVGPSGCGKSTVVALL 1125 (1321)
T ss_dssp             CSEEEEEEEECTT-------CEEEEECSTTSSTTSHHHHH
T ss_pred             ccccceeEEECCC-------CEEEEECCCCChHHHHHHHH
Confidence            5899999999999       99999999999999999977

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.42  E-value=2.7e-05  Score=72.46  Aligned_cols=30  Identities=17%  Similarity=0.246  Sum_probs=25.3

Q ss_pred             cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+++.++.|       ..++|+|||||||||+|+++
T Consensus       251 ~~l~~~v~~g-------~~i~I~GptGSGKTTlL~aL  280 (511)
T 2oap_1          251 AYLWLAIEHK-------FSAIVVGETASGKTTTLNAI  280 (511)
T ss_dssp             HHHHHHHHTT-------CCEEEEESTTSSHHHHHHHH
T ss_pred             HHHHHHHhCC-------CEEEEECCCCCCHHHHHHHH
Confidence            4455666777       78999999999999999987

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.40  E-value=6.6e-05  Score=66.98  Aligned_cols=22  Identities=36%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||||+||||+|+.+.-
T Consensus       137 ~~i~ivG~~GsGKTTll~~l~~  158 (372)
T 2ewv_A          137 GLILVTGPTGSGKSTTIASMID  158 (372)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHh
Confidence            8999999999999999998843

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.39  E-value=0.00011  Score=63.78  Aligned_cols=24  Identities=38%  Similarity=0.499  Sum_probs=21.2

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .++++|+||||+||||+++.++..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            389999999999999999998543

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.38  E-value=9.5e-05  Score=67.08  Aligned_cols=21  Identities=38%  Similarity=0.496  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||||+||||+|+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~all  188 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGL  188 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999873

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.37  E-value=7.5e-05  Score=76.62  Aligned_cols=35  Identities=26%  Similarity=0.414  Sum_probs=32.8

Q ss_pred             CeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        173 NSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +...|++++|++++|       +.++|+||+||||||+++.+
T Consensus       430 ~~~vL~~isl~i~~G-------~~vaivG~sGsGKSTll~ll  464 (1321)
T 4f4c_A          430 DVPILRGMNLRVNAG-------QTVALVGSSGCGKSTIISLL  464 (1321)
T ss_dssp             TSCSEEEEEEEECTT-------CEEEEEECSSSCHHHHHHHH
T ss_pred             CCceeeceEEeecCC-------cEEEEEecCCCcHHHHHHHh
Confidence            457899999999999       99999999999999999987

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.37  E-value=2.5e-05  Score=66.15  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CCeeEecCccceecc---CCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVES---GGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       172 p~~~~l~~~~~~~~~---~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .....++++++.+.+   +       +.++|+|++|+||||+.|.++-
T Consensus        30 ~~~~~l~~~~~~i~~~l~g-------~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           30 EEQQILKKKAEEVKPYLNG-------RSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             --CHHHHHHHHTTHHHHTT-------CCEEEECSTTSCHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhhhhcCC-------CEEEEECCCCCCHHHHHHHHHH
Confidence            345678999999988   8       8999999999999999998853

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.32  E-value=6.8e-05  Score=67.15  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=30.1

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++++.+.++       +.++|+||||+||||++|.++-
T Consensus       157 ~~l~~~~~~i~~~-------~~i~l~G~~GsGKSTl~~~l~~  191 (377)
T 1svm_A          157 DFLKCMVYNIPKK-------RYWLFKGPIDSGKTTLAAALLE  191 (377)
T ss_dssp             HHHHHHHHCCTTC-------CEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHhcccccCCC-------CEEEEECCCCCCHHHHHHHHHh
Confidence            3566777888888       8999999999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=97.31  E-value=5.7e-05  Score=74.10  Aligned_cols=35  Identities=26%  Similarity=0.317  Sum_probs=31.0

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHH-H-HHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQ-L-GLI  217 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~-i-~l~  217 (229)
                      .|++++|++..|       ++++|+|+||+|||||+|. + +++
T Consensus       512 ~L~~vsl~i~~G-------eiv~I~G~nGSGKSTLl~~~L~g~l  548 (842)
T 2vf7_A          512 NLDNLDVRFPLG-------VMTSVTGVSGSGKSTLVSQALVDAL  548 (842)
T ss_dssp             TEEEEEEEEESS-------SEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred             ccccceEEEcCC-------CEEEEEcCCCcCHHHHHHHHHHHHH
Confidence            478999999999       9999999999999999996 3 554

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.31  E-value=0.00013  Score=61.26  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++|+|||||||||++|.++
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999997

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=97.30  E-value=0.00016  Score=63.57  Aligned_cols=24  Identities=33%  Similarity=0.516  Sum_probs=21.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .++++|+||||+||||+++.++..
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~  152 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANW  152 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            389999999999999999998643

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.29  E-value=5.2e-05  Score=75.14  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=30.0

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .|++++|++..|       ++++|+|+||+|||||++.+
T Consensus       639 ~Lk~Vsl~I~~G-------eiv~I~G~nGSGKSTLl~~l  670 (972)
T 2r6f_A          639 NLKNVSVKIPLG-------TFVAVTGVSGSGKSTLVNEV  670 (972)
T ss_dssp             SCCSEEEEEESS-------SEEECCBCTTSSHHHHHTTT
T ss_pred             ccccceEEEcCC-------CEEEEEcCCCCCHHHHHHHH
Confidence            478999999999       99999999999999999985

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.29  E-value=0.00012  Score=72.43  Aligned_cols=32  Identities=19%  Similarity=0.314  Sum_probs=28.7

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .++++++++..|       ++++|+||||+|||||++.+
T Consensus       599 ~Lk~Vsl~I~~G-------eiv~I~G~SGSGKSTLl~~~  630 (916)
T 3pih_A          599 NLKNIDVEIPLG-------VFVCVTGVSGSGKSSLVMET  630 (916)
T ss_dssp             TCCSEEEEEESS-------SEEEEECSTTSSHHHHHHHT
T ss_pred             cccccceEEcCC-------cEEEEEccCCCChhhhHHHH
Confidence            378999999999       99999999999999998643

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.26  E-value=0.00013  Score=56.68  Aligned_cols=24  Identities=17%  Similarity=0.228  Sum_probs=21.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      +.++|+||||+|||||++.++-..
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~   60 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQA   60 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999999999986543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.22  E-value=0.00024  Score=60.24  Aligned_cols=37  Identities=32%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.+.|..+++    +.+|       ++++|+||||+|||||+++++..
T Consensus        17 ~~~ld~~lgg----l~~G-------~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           17 PPPLDYVLPN----MVAG-------TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             CCCCCEEETT----EETT-------SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCChheeECC----ccCC-------CEEEEEcCCCCCHHHHHHHHHHH
Confidence            3345666653    4566       99999999999999999999763

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.20  E-value=0.00021  Score=64.50  Aligned_cols=24  Identities=29%  Similarity=0.545  Sum_probs=21.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ++.+|+||||+||||+|+.++.+.
T Consensus        27 ~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           27 NFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhh
Confidence            799999999999999999996653

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.20  E-value=0.00027  Score=61.77  Aligned_cols=42  Identities=21%  Similarity=0.241  Sum_probs=30.9

Q ss_pred             cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      .+++|...++       ++++|+||||+||||++..++.  ++++.|--|+
T Consensus        96 ~~l~~~~~~~-------~vI~ivG~~G~GKTT~~~~LA~--~l~~~g~kVl  137 (320)
T 1zu4_A           96 YRIDFKENRL-------NIFMLVGVNGTGKTTSLAKMAN--YYAELGYKVL  137 (320)
T ss_dssp             CCCCCCTTSC-------EEEEEESSTTSSHHHHHHHHHH--HHHHTTCCEE
T ss_pred             cCccccCCCC-------eEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEE
Confidence            4566665555       8999999999999999988764  3455565443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.15  E-value=0.00026  Score=62.54  Aligned_cols=29  Identities=17%  Similarity=0.316  Sum_probs=25.3

Q ss_pred             ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.+.+|       +++.|.||||+|||||+++++..
T Consensus       126 ggi~~G-------~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          126 GGIETQ-------AITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SSEESS-------EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCC-------eEEEEECCCCCCHHHHHHHHHHH
Confidence            456777       99999999999999999998654

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.10  E-value=0.00045  Score=61.21  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      ...+|+|+||+||||+|..|.++.+
T Consensus        26 gl~vi~G~NGaGKT~ileAI~~~l~   50 (371)
T 3auy_A           26 GIVAIIGENGSGKSSIFEAVFFALF   50 (371)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHc
Confidence            6999999999999999999987543

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.07  E-value=0.00018  Score=57.55  Aligned_cols=26  Identities=23%  Similarity=0.419  Sum_probs=22.8

Q ss_pred             ceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        182 EDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       182 ~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +.+..+       ..++|+|+||+|||||++.+
T Consensus        21 ~~~~~~-------~~v~lvG~~g~GKSTLl~~l   46 (210)
T 1pui_A           21 LPSDTG-------IEVAFAGRSNAGKSSALNTL   46 (210)
T ss_dssp             SSCSCS-------EEEEEEECTTSSHHHHHTTT
T ss_pred             CCCCCC-------cEEEEECCCCCCHHHHHHHH
Confidence            556666       89999999999999999987

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.07  E-value=0.0004  Score=60.83  Aligned_cols=22  Identities=36%  Similarity=0.465  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .-+++|+|||||||||+++.+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999884

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.05  E-value=0.00026  Score=61.15  Aligned_cols=21  Identities=33%  Similarity=0.615  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|.||||+||||||+++.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999987

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.04  E-value=0.0003  Score=61.43  Aligned_cols=49  Identities=20%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++.+..+..+++.+..+-..+...+.++|+||||+||||++|.++-.
T Consensus        26 ~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           26 EFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             GCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             HccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHH
Confidence            4556666666777766542000113368999999999999999998643

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.00  E-value=0.00056  Score=59.43  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++|+||||+||||+++.++..
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHHH
Confidence            89999999999999999988643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.98  E-value=0.0004  Score=59.15  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||||+|||||+|.++-
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~   66 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVAN   66 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3499999999999999999854

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.96  E-value=0.00046  Score=54.82  Aligned_cols=22  Identities=23%  Similarity=0.307  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      -.++|.|+||+|||||++.+.-
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~   51 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTR   51 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhc
Confidence            4789999999999999998743

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.92  E-value=0.00054  Score=56.79  Aligned_cols=22  Identities=27%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|.||+|+||||+++.++-
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            8999999999999999998853

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.92  E-value=0.00036  Score=60.21  Aligned_cols=21  Identities=19%  Similarity=0.366  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++|.||||+||||||++++
T Consensus       170 eiv~l~G~sG~GKSTll~~l~  190 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAIN  190 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHS
T ss_pred             CeEEEECCCCCcHHHHHHHhc
Confidence            899999999999999999983

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.89  E-value=0.00065  Score=62.99  Aligned_cols=23  Identities=22%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++|+||||+|||||+++++..
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~  304 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVEN  304 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            89999999999999999998543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.89  E-value=0.00041  Score=62.92  Aligned_cols=32  Identities=25%  Similarity=0.246  Sum_probs=23.9

Q ss_pred             eCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        171 IPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       171 vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++....+.+++|             .++|+||||+||||||++++
T Consensus        21 y~~~~vl~~vsf-------------~I~lvG~sGaGKSTLln~L~   52 (418)
T 2qag_C           21 VYRKSVKRGFEF-------------TLMVVGESGLGKSTLINSLF   52 (418)
T ss_dssp             TTTTTCC-CCCE-------------EEEEECCTTSSHHHHHHHHT
T ss_pred             ECCEEEecCCCE-------------EEEEECCCCCcHHHHHHHHh
Confidence            344456666654             35999999999999999984

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.87  E-value=0.00023  Score=65.87  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=21.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+|+|+||+||||+|+.+.++
T Consensus        61 g~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           61 GFCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             SEEEEEESHHHHHHHHTHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHH
Confidence            49999999999999999999776

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.84  E-value=0.00065  Score=56.42  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||||+||||++|.++-
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~   71 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAG   71 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3499999999999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.81  E-value=0.00067  Score=60.29  Aligned_cols=21  Identities=24%  Similarity=0.390  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|+||||+||||||+.+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~  236 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALL  236 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHh
Confidence            799999999999999999884

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=96.81  E-value=0.00026  Score=61.62  Aligned_cols=23  Identities=17%  Similarity=0.336  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHH-HHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL-GLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i-~l~  217 (229)
                      ++++|+||||+||||||+.+ ++.
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~  197 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL  197 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc
Confidence            89999999999999999998 443

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.81  E-value=0.00017  Score=60.13  Aligned_cols=23  Identities=39%  Similarity=0.369  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++|+||||+||||+|++++.+
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            58899999999999999999654

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.75  E-value=0.00053  Score=64.27  Aligned_cols=21  Identities=38%  Similarity=0.523  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++|+|+||+||||++|.++
T Consensus       370 ~iI~LiG~sGSGKSTLar~La  390 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALA  390 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHH
Confidence            899999999999999999984

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.73  E-value=0.0013  Score=56.64  Aligned_cols=31  Identities=23%  Similarity=0.291  Sum_probs=24.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ++++|+|+||+||||+++.++..  +++.|--|
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~--~~~~~~~v  129 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALY--YKGKGRRP  129 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHH--HHHTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH--HHHcCCeE
Confidence            89999999999999999988643  45555544

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.70  E-value=0.00094  Score=56.39  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||||+||||++|.++-
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~   95 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAG   95 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCcChHHHHHHHHHH
Confidence            3489999999999999999864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.62  E-value=0.00059  Score=61.79  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=26.5

Q ss_pred             cCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        178 GRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++++.+       ..++|+|+|++||||||+.+.
T Consensus       148 ~~i~lelk~g-------~~VgLVG~~gAGKSTLL~~Ls  178 (416)
T 1udx_A          148 RRLRLELMLI-------ADVGLVGYPNAGKSSLLAAMT  178 (416)
T ss_dssp             EEEEEEECCS-------CSEEEECCGGGCHHHHHHHHC
T ss_pred             eeeeeEEcCC-------CEEEEECCCCCcHHHHHHHHH
Confidence            4567777777       899999999999999999873

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.59  E-value=0.0014  Score=56.44  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++++|+||||+||||+++.++..
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            79999999999999999988643

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.57  E-value=0.0015  Score=58.84  Aligned_cols=26  Identities=23%  Similarity=0.285  Sum_probs=22.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      +++.|+||||+|||||++++++..++
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~  204 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQI  204 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhcc
Confidence            89999999999999999988765543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.50  E-value=0.00042  Score=60.32  Aligned_cols=43  Identities=28%  Similarity=0.350  Sum_probs=31.8

Q ss_pred             eeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        170 YIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       170 ~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .++++..+..+...++.|     ....++++||+|+||||+++.++-.
T Consensus        27 ~~g~~~~~~~L~~~i~~g-----~~~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           27 VYGQNEVITTVRKFVDEG-----KLPHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCSCHHHHHHHHHHHHTT-----CCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHhcC-----CCceEEEECCCCCCHHHHHHHHHHH
Confidence            445556666677777776     2233999999999999999988543

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.43  E-value=0.0013  Score=57.74  Aligned_cols=22  Identities=36%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+|+||+||||+++.++-
T Consensus        57 ~~i~i~G~~g~GKSTl~~~l~~   78 (341)
T 2p67_A           57 LRLGVTGTPGAGKSTFLEAFGM   78 (341)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            8999999999999999998843

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=96.43  E-value=0.00095  Score=63.19  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||||+||||+|++++.
T Consensus        46 p~iaIvG~nGsGKSTLL~~I~G   67 (608)
T 3szr_A           46 PAIAVIGDQSSGKSSVLEALSG   67 (608)
T ss_dssp             CCEECCCCTTSCHHHHHHHHHS
T ss_pred             CeEEEECCCCChHHHHHHHHhC
Confidence            3599999999999999999843

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.37  E-value=0.00058  Score=64.45  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=35.4

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++.+..+..+++.+..+       +.++|+||||+||||++|.++-
T Consensus        42 ~i~G~~~~l~~l~~~i~~g-------~~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           42 QVIGQEHAVEVIKTAANQK-------RHVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             HCCSCHHHHHHHHHHHHTT-------CCEEEECCTTSSHHHHHHHHHH
T ss_pred             eEECchhhHhhccccccCC-------CEEEEEeCCCCCHHHHHHHHhc
Confidence            4567777778888888888       8999999999999999999854

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.36  E-value=0.0022  Score=51.86  Aligned_cols=21  Identities=38%  Similarity=0.488  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+|++|+||||+.+.++
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELE   46 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999984

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.28  E-value=0.0027  Score=52.69  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||+|+||||++|.++-
T Consensus        46 ~~vll~G~~GtGKT~la~~la~   67 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAG   67 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            5799999999999999999864

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.23  E-value=0.0032  Score=54.12  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=19.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+++|+||+|+||||+.+.+
T Consensus        31 ~~ii~I~G~sGsGKSTla~~L   51 (290)
T 1odf_A           31 PLFIFFSGPQGSGKSFTSIQI   51 (290)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHH
Confidence            479999999999999999987

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.21  E-value=0.0024  Score=55.26  Aligned_cols=21  Identities=48%  Similarity=0.412  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHH
Q psy13262        196 VLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       196 ~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++|+||||+||||+++.++-
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            399999999999999998854

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.14  E-value=0.0026  Score=53.09  Aligned_cols=22  Identities=36%  Similarity=0.552  Sum_probs=19.9

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|+|++|+||||+.+.++
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~   53 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQ   53 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999875

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.11  E-value=0.0035  Score=55.16  Aligned_cols=22  Identities=36%  Similarity=0.475  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+++|+|++|+||||||+.+.-
T Consensus        75 ~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           75 FRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            7899999999999999998853

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.11  E-value=0.0038  Score=53.41  Aligned_cols=22  Identities=32%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|+||+|+||||+.+.++
T Consensus        33 ~~livl~G~sGsGKSTla~~L~   54 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIF   54 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3789999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.03  E-value=0.0053  Score=55.80  Aligned_cols=33  Identities=6%  Similarity=0.079  Sum_probs=27.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|++|+|||||+..++...... .|.||+
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl  236 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATK-TNENVA  236 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEE
Confidence            899999999999999999988765543 466664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.00  E-value=0.0045  Score=53.36  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=24.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++++++|+||+||||++..++..  +++.|--|+
T Consensus        99 ~vi~i~G~~G~GKTT~~~~la~~--~~~~g~~v~  130 (297)
T 1j8m_F           99 YVIMLVGVQGTGKTTTAGKLAYF--YKKKGFKVG  130 (297)
T ss_dssp             EEEEEECSSCSSTTHHHHHHHHH--HHHTTCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEE
Confidence            89999999999999999887543  455565543

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.98  E-value=0.0053  Score=54.40  Aligned_cols=23  Identities=17%  Similarity=0.192  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++.|.||||+|||||+..++..
T Consensus        62 ~i~~I~GppGsGKSTLal~la~~   84 (356)
T 3hr8_A           62 RIVEIFGQESSGKTTLALHAIAE   84 (356)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            89999999999999999988654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.92  E-value=0.005  Score=49.63  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||.|+||||+++.++-.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            379999999999999999988543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.89  E-value=0.0045  Score=53.00  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||+|+|||++.|.++-
T Consensus        50 ~~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           50 KGVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceEEEECCCCcCHHHHHHHHHH
Confidence            7899999999999999998864

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=95.78  E-value=0.007  Score=49.70  Aligned_cols=26  Identities=27%  Similarity=0.401  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      +.++|.||+|+||||++....+..+.
T Consensus        77 ~~~~i~g~TGsGKTt~~~~~~~~~~~  102 (235)
T 3llm_A           77 SVVIIRGATGCGKTTQVPQFILDDFI  102 (235)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCcHHhHHHHHhcchh
Confidence            79999999999999999877655443

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.72  E-value=0.0065  Score=48.30  Aligned_cols=31  Identities=23%  Similarity=0.194  Sum_probs=23.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..++|+||+|+|||++++.++-.  +.+.|.++
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~   85 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE--LAKRNVSS   85 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH--HHTTTCCE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH--HHHcCCeE
Confidence            68999999999999999977543  33445443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.70  E-value=0.0069  Score=52.67  Aligned_cols=20  Identities=30%  Similarity=0.313  Sum_probs=18.8

Q ss_pred             EEEEEeCCCCChHHHHHHHH
Q psy13262        196 VLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       196 ~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++|+||+|+||||+++.++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~   65 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLW   65 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            89999999999999999875

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=95.68  E-value=0.0089  Score=52.66  Aligned_cols=25  Identities=28%  Similarity=0.320  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      +.+.|.||||+|||||+..++....
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~   86 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQ   86 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999988865543

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.67  E-value=0.0062  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.351  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++|+||+|+||||+++.++-
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.67  E-value=0.0098  Score=53.93  Aligned_cols=32  Identities=25%  Similarity=0.323  Sum_probs=24.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++++++|+||+||||++..++.  .++..|.-|+
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~--~l~~~g~~Vl  130 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLAL--YYKGKGRRPL  130 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH--HHHTTTCCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHH--HHHHcCCeEE
Confidence            7999999999999999887754  3455565443

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=95.64  E-value=0.0082  Score=53.18  Aligned_cols=31  Identities=16%  Similarity=0.021  Sum_probs=24.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..++|+||+|+||||++|.+.....  ..|..|
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~~--~~~~~~   66 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLREY--MQGSRV   66 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHH--TTTCCE
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHH--HCCCEE
Confidence            6899999999999999999865443  345444

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.64  E-value=0.0071  Score=56.35  Aligned_cols=23  Identities=26%  Similarity=0.479  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||||+||||++|.++-.
T Consensus       109 ~~vll~Gp~GtGKTtlar~ia~~  131 (543)
T 3m6a_A          109 PILCLAGPPGVGKTSLAKSIAKS  131 (543)
T ss_dssp             CEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            79999999999999999998644

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.62  E-value=0.0085  Score=47.72  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|.||||+++.++-
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5899999999999999998853

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.60  E-value=0.0057  Score=56.60  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||||+|||||+|.++-
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~   86 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAG   86 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4599999999999999999864

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=95.57  E-value=0.0092  Score=45.88  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++++.++-
T Consensus        44 ~~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           44 NNPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999998754

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.52  E-value=0.0078  Score=50.81  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||+|+||||++|.++-
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            7899999999999999998853

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.51  E-value=0.0092  Score=54.25  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..+++++||||+||||++..++.  .++..|.-|
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~--~l~~~G~kV  128 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAY--FYKKRGYKV  128 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHH--HHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHHcCCeE
Confidence            38999999999999999887763  345555544

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=95.32  E-value=0.0084  Score=55.64  Aligned_cols=34  Identities=21%  Similarity=0.232  Sum_probs=26.5

Q ss_pred             ccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        180 CKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      +.+++..+       .+++|.|++|+||||+|+++.+..++
T Consensus       160 v~ldL~~~-------pHlLIaG~TGSGKSt~L~~li~sLl~  193 (512)
T 2ius_A          160 VVADLAKM-------PHLLVAGTTGSGASVGVNAMILSMLY  193 (512)
T ss_dssp             EEEEGGGS-------CSEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             EEEEcccC-------ceEEEECCCCCCHHHHHHHHHHHHHH
Confidence            44555555       79999999999999999998654443

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.31  E-value=0.014  Score=51.41  Aligned_cols=32  Identities=13%  Similarity=0.201  Sum_probs=27.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|++|.|||||+..++.....  .|.||+
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl   78 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALN--DDRGVA   78 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE
Confidence            89999999999999999998776654  677765

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.29  E-value=0.0041  Score=53.54  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||+|.||||+++.++-.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999988644

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.26  E-value=0.013  Score=49.61  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||+|+|||++.|.++-.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHH
Confidence            58999999999999999988654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.23  E-value=0.0099  Score=51.01  Aligned_cols=23  Identities=17%  Similarity=0.303  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||+|+||||+++.++-
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            36899999999999999998864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=95.12  E-value=0.011  Score=45.50  Aligned_cols=23  Identities=22%  Similarity=0.326  Sum_probs=20.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||.|+|||++++.++-
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHH
Confidence            36889999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.03  E-value=0.017  Score=48.38  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.+.++-
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            7899999999999999998853

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.01  E-value=0.014  Score=47.72  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|++|+|||||++.+.
T Consensus        30 ~~i~lvG~~g~GKStlin~l~   50 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSIL   50 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHc
Confidence            689999999999999999874

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=94.95  E-value=0.019  Score=48.67  Aligned_cols=22  Identities=45%  Similarity=0.443  Sum_probs=20.0

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|+|+.||||||+.+.++
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999886

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=94.93  E-value=0.018  Score=47.70  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||.|+||||+.+.++
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999885

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.84  E-value=0.02  Score=51.76  Aligned_cols=25  Identities=20%  Similarity=0.273  Sum_probs=21.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ...++|+||+|+||||+++.++-..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999986543

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.79  E-value=0.014  Score=52.53  Aligned_cols=32  Identities=16%  Similarity=0.315  Sum_probs=26.5

Q ss_pred             CccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        179 RCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ++.+.+.+|       +.+.|.||+|+||||+++.++-.
T Consensus       166 D~~~pi~rG-------Qr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          166 DLASPIGRG-------QRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             HHHSCCBTT-------CEEEEECCSSSSHHHHHHHHHHH
T ss_pred             eeeeeecCC-------cEEEEecCCCCChhHHHHHHHHH
Confidence            455666677       99999999999999999987543

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=94.75  E-value=0.015  Score=57.15  Aligned_cols=30  Identities=20%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMR  212 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk  212 (229)
                      .|+++++++..+       +.++|||..|||||||.-
T Consensus        25 NLkni~v~iP~~-------~l~viTGvSGSGKSSLaf   54 (842)
T 2vf7_A           25 NLKDISVKVPRD-------ALVVFTGVSGSGKSSLAF   54 (842)
T ss_dssp             TCCSEEEEEESS-------SEEEEESSTTSSHHHHHT
T ss_pred             CCCCeeEEecCC-------CEEEEECCCCCCHHHHHH
Confidence            467788888888       999999999999999963

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=94.67  E-value=0.026  Score=51.01  Aligned_cols=33  Identities=9%  Similarity=0.021  Sum_probs=27.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|++|.|||||+..++..... +.|.||+
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~-~~g~~vl  233 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAAL-KEGVGVG  233 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEE
Confidence            89999999999999999998876654 2476764

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=94.61  E-value=0.024  Score=52.10  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||+|+|||+++|.++-
T Consensus        50 ~gvLL~GppGtGKT~Laraia~   71 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAG   71 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            5689999999999999999864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=94.59  E-value=0.026  Score=46.37  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.+.++-
T Consensus        40 ~~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           40 KGALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=94.59  E-value=0.026  Score=43.90  Aligned_cols=21  Identities=24%  Similarity=0.631  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|+.|+|||||++.+.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~   69 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLT   69 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999874

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=94.52  E-value=0.021  Score=51.29  Aligned_cols=23  Identities=30%  Similarity=0.392  Sum_probs=20.2

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ....++|+|+.|+||||+.+.++
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~  279 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHL  279 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999999863

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=94.52  E-value=0.018  Score=57.22  Aligned_cols=29  Identities=24%  Similarity=0.434  Sum_probs=25.8

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVM  211 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlL  211 (229)
                      .|+++++++..+       +.++|||+.|||||+|-
T Consensus        33 NLkni~v~iP~~-------~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           33 NLKNIDVEIPRG-------KLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SCCSEEEEEETT-------SEEEEEESTTSSHHHHH
T ss_pred             cCCceeeeccCC-------cEEEEECCCCCCHHHHH
Confidence            577888888888       99999999999999984

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=94.51  E-value=0.02  Score=51.60  Aligned_cols=21  Identities=24%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|+||+|||||++.+.
T Consensus       181 ~kvaivG~~gvGKSTLln~l~  201 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAIL  201 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHh
Confidence            589999999999999999874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=94.49  E-value=0.02  Score=50.71  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+|+|++||||||+.+.
T Consensus       180 ~~V~lvG~~naGKSTLln~L~  200 (364)
T 2qtf_A          180 PSIGIVGYTNSGKTSLFNSLT  200 (364)
T ss_dssp             CEEEEECBTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            569999999999999999884

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=94.46  E-value=0.029  Score=49.02  Aligned_cols=26  Identities=19%  Similarity=0.189  Sum_probs=22.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      +.+.|.||+|+|||||+..++..+.+
T Consensus       123 ~i~~I~G~~GsGKTtla~~la~~~~~  148 (343)
T 1v5w_A          123 AITEAFGEFRTGKTQLSHTLCVTAQL  148 (343)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            89999999999999999998776433

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.30  E-value=0.035  Score=50.58  Aligned_cols=33  Identities=27%  Similarity=0.389  Sum_probs=25.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ..+++++|++|+||||++.-++  ..+++.|.-|.
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA--~~l~~~G~kVl  132 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLA--RYFQKRGYKVG  132 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH--HHHHTTTCCEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHH--HHHHHCCCeEE
Confidence            4799999999999999976654  45666676553

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.27  E-value=0.028  Score=44.18  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|.|||++++.++-
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3599999999999999998853

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=94.25  E-value=0.034  Score=52.15  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|+||+|+||||+++.+.  ..+.+.|.+|+
T Consensus       205 ~~~~I~G~pGTGKTt~i~~l~--~~l~~~g~~Vl  236 (574)
T 3e1s_A          205 RLVVLTGGPGTGKSTTTKAVA--DLAESLGLEVG  236 (574)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH--HHHHHTTCCEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHH--HHHHhcCCeEE
Confidence            799999999999999988753  44556677664

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=94.24  E-value=0.022  Score=49.26  Aligned_cols=23  Identities=35%  Similarity=0.362  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||.|.||||+++.++-
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998853

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.17  E-value=0.027  Score=44.56  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|++++|||||++.+.
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            478999999999999999873

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=94.08  E-value=0.028  Score=49.19  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+|++++||||+|+.+.
T Consensus        35 p~I~vvG~~~sGKSSLln~l~   55 (360)
T 3t34_A           35 PAIAVVGGQSSGKSSVLESIV   55 (360)
T ss_dssp             CEEEEECBTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHh
Confidence            589999999999999999874

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=94.06  E-value=0.044  Score=49.70  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=25.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhc-CCCcc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQM-ENPQL  228 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~-G~~v~  228 (229)
                      .++++++|++|+||||+.-  .|+..+++. |.-|+
T Consensus       100 ~~vI~ivG~~GvGKTT~a~--~LA~~l~~~~G~kVl  133 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVG--KLGKFLREKHKKKVL  133 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHH--HHHHHHHHTSCCCEE
T ss_pred             CeEEEEECCCCCCHHHHHH--HHHHHHHHhcCCeEE
Confidence            4799999999999999954  455666776 76664

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=94.06  E-value=0.041  Score=46.42  Aligned_cols=23  Identities=26%  Similarity=0.286  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||.|+|||++.+.++-.
T Consensus        68 ~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988543

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=94.05  E-value=0.039  Score=45.36  Aligned_cols=23  Identities=30%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++++|.||.||||+|.-+.++
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHH
Confidence            45899999999999999988774

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=93.98  E-value=0.022  Score=50.17  Aligned_cols=19  Identities=37%  Similarity=0.544  Sum_probs=17.5

Q ss_pred             EEEEEeCCCCChHHHHHHH
Q psy13262        196 VLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       196 ~~~ltGpN~~GKStlLk~i  214 (229)
                      .++|+|++|+|||||++++
T Consensus        39 ~I~vvG~~g~GKSTLln~L   57 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSL   57 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4799999999999999986

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=93.91  E-value=0.038  Score=48.38  Aligned_cols=20  Identities=30%  Similarity=0.531  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|+||+|||||++.+
T Consensus       168 ~~v~lvG~~gvGKSTLin~L  187 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKAL  187 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999987

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=93.89  E-value=0.043  Score=47.41  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      +.+.|.||+|+|||||+.+++..+
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHH
Confidence            899999999999999999887654

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=93.88  E-value=0.043  Score=47.56  Aligned_cols=23  Identities=22%  Similarity=0.072  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++|+||.|.||||+++.++-
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=93.82  E-value=0.039  Score=46.00  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||.|+|||++.+.++-.
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            378999999999999999988654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=93.74  E-value=0.047  Score=46.94  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.|.++-
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            7899999999999999998854

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=93.72  E-value=0.018  Score=47.76  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.+.++-
T Consensus        45 ~~vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            4588999999999999998864

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=93.70  E-value=0.052  Score=46.18  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=20.3

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||.|+|||++.|.++-
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~   58 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFR   58 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            37889999999999999998864

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=93.63  E-value=0.042  Score=47.11  Aligned_cols=22  Identities=27%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|+||.|.|||++.+.++
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia   76 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIIS   76 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHH
Confidence            3579999999999999999884

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=93.56  E-value=0.05  Score=45.23  Aligned_cols=30  Identities=23%  Similarity=0.275  Sum_probs=24.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP  226 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~  226 (229)
                      ..++|.|+.|+||||.++.+.  ..+...|.+
T Consensus        28 ~~i~~eG~~GsGKsT~~~~l~--~~l~~~~~~   57 (236)
T 3lv8_A           28 KFIVIEGLEGAGKSTAIQVVV--ETLQQNGID   57 (236)
T ss_dssp             CEEEEEESTTSCHHHHHHHHH--HHHHHTTCC
T ss_pred             eEEEEECCCCCCHHHHHHHHH--HHHHhcCCC
Confidence            799999999999999998874  344556665

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=93.55  E-value=0.044  Score=41.45  Aligned_cols=22  Identities=27%  Similarity=0.222  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.|+||.|+|||++.|.++-
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998753

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=93.55  E-value=0.052  Score=49.29  Aligned_cols=32  Identities=9%  Similarity=0.004  Sum_probs=27.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|+.|.|||||+-.++......  |.||+
T Consensus       198 ~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl  229 (444)
T 3bgw_A          198 NFVLIAARPSMGKTAFALKQAKNMSDN--DDVVN  229 (444)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEE
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEE
Confidence            899999999999999999888776553  77765

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=93.54  E-value=0.079  Score=42.85  Aligned_cols=32  Identities=31%  Similarity=0.342  Sum_probs=24.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.++|.|+.|+|||+|.-+++.... .+.|-+|
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~-~~~~~~v   62 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGA-EEYGEPG   62 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH-HHHCCCE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH-HhcCCCc
Confidence            8999999999999999888765443 3445444

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=93.51  E-value=0.065  Score=46.15  Aligned_cols=32  Identities=9%  Similarity=-0.016  Sum_probs=25.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|+.|+|||||+..++.....  -|-||+
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~--~g~~vl  100 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSD--NDDVVN  100 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHT--TTCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE
Confidence            89999999999999999988766533  345543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=93.50  E-value=0.068  Score=46.77  Aligned_cols=31  Identities=29%  Similarity=0.294  Sum_probs=23.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .+++|+|+.|+||||++..++..  ++..|..|
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~--l~~~g~kV  110 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMH--LIERGHRV  110 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH--HHTTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH--HHhCCCce
Confidence            68999999999999999876543  45555544

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=93.47  E-value=0.058  Score=46.68  Aligned_cols=23  Identities=17%  Similarity=0.328  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.++|+||.|.|||++.+.++-.
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~   93 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQA   93 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999988643

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=93.45  E-value=0.055  Score=46.73  Aligned_cols=22  Identities=32%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||.|+|||++.|.++-
T Consensus        46 ~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            7899999999999999998864

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=93.42  E-value=0.042  Score=45.42  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=16.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|.|+.|+||||..+.+.
T Consensus        26 ~~I~~eG~~GsGKsT~~~~l~   46 (227)
T 3v9p_A           26 KFITFEGIDGAGKTTHLQWFC   46 (227)
T ss_dssp             CEEEEECCC---CHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            799999999999999999884

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=93.39  E-value=0.068  Score=47.16  Aligned_cols=31  Identities=19%  Similarity=0.256  Sum_probs=24.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.+.|.|++|+|||||...++....  +.|-+|
T Consensus        64 ~ii~I~G~pGsGKTtLal~la~~~~--~~g~~v   94 (356)
T 1u94_A           64 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTC   94 (356)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH--HCCCeE
Confidence            8999999999999999988765543  345554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=93.36  E-value=0.06  Score=42.99  Aligned_cols=22  Identities=14%  Similarity=0.149  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+|+.|+||||++..+.-
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~   52 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIE   52 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999987743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=93.34  E-value=0.052  Score=42.22  Aligned_cols=21  Identities=19%  Similarity=0.349  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~   46 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFT   46 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            689999999999999999874

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=93.20  E-value=0.066  Score=45.94  Aligned_cols=27  Identities=22%  Similarity=0.163  Sum_probs=23.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILA  221 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma  221 (229)
                      +.+.|.||+|+|||+|...++..+.+.
T Consensus        99 ~i~~i~G~~gsGKT~la~~la~~~~l~  125 (322)
T 2i1q_A           99 SVTEFAGVFGSGKTQIMHQSCVNLQNP  125 (322)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTCG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            899999999999999999988765443

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=93.17  E-value=0.061  Score=47.28  Aligned_cols=21  Identities=33%  Similarity=0.463  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||.|+||||+-+.++
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA   61 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLA   61 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            689999999999999977765

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=93.15  E-value=0.073  Score=47.07  Aligned_cols=24  Identities=38%  Similarity=0.592  Sum_probs=20.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|.|+.||||||++|++-++
T Consensus        33 ~~killlG~~~SGKST~~kq~~i~   56 (362)
T 1zcb_A           33 LVKILLLGAGESGKSTFLKQMRII   56 (362)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCcHHHHHHHHHHH
Confidence            378999999999999999998543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=93.09  E-value=0.054  Score=45.40  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|.|||++.|.++-
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998864

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=93.08  E-value=0.08  Score=43.23  Aligned_cols=20  Identities=35%  Similarity=0.355  Sum_probs=17.2

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+||.|+||||+...+
T Consensus        35 ~~ilI~GpsGsGKStLA~~L   54 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALEL   54 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            78999999999999985443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=93.07  E-value=0.059  Score=47.13  Aligned_cols=23  Identities=30%  Similarity=0.476  Sum_probs=20.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||.|+|||++.|.++-
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999998853

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=93.04  E-value=0.045  Score=49.57  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=19.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++|+|++|+||||+...++.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~  121 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLAR  121 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999877654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.00  E-value=0.075  Score=42.54  Aligned_cols=22  Identities=18%  Similarity=0.187  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+|+.|+|||||+..+.-
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~   60 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLID   60 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999987743

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=92.88  E-value=0.074  Score=45.85  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|.||||+++.++-
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999998853

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=92.88  E-value=0.1  Score=44.75  Aligned_cols=32  Identities=19%  Similarity=0.061  Sum_probs=24.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..++|+||.|.|||+|++.++-... .+.|.+|
T Consensus       153 ~~lll~G~~GtGKT~La~aia~~~~-~~~g~~v  184 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMAHELS-EKKGVST  184 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH-HHSCCCE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH-HhcCCcE
Confidence            7899999999999999997765332 0445554

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=92.86  E-value=0.066  Score=42.21  Aligned_cols=21  Identities=29%  Similarity=0.355  Sum_probs=19.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~   46 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFI   46 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            689999999999999999874

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=92.72  E-value=0.075  Score=42.28  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~   47 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFT   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHH
Confidence            579999999999999999764

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=92.70  E-value=0.076  Score=46.48  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.++|+||.|+|||+|...++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            78899999999999999998754

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=92.69  E-value=0.081  Score=48.67  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++|+||.|+||||+.+.++-
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            37999999999999999998854

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=92.65  E-value=0.072  Score=41.66  Aligned_cols=21  Identities=19%  Similarity=0.417  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        27 ~ki~vvG~~~~GKSsLi~~l~   47 (192)
T 2il1_A           27 LQVIIIGSRGVGKTSLMERFT   47 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999873

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=92.46  E-value=0.078  Score=46.40  Aligned_cols=22  Identities=32%  Similarity=0.463  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.|.++-
T Consensus        85 ~~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHHH
Confidence            6799999999999999998864

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=92.45  E-value=0.064  Score=52.07  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|+||||+||||++.++.+
T Consensus       110 ~~vii~gpTGSGKTtllp~ll~  131 (773)
T 2xau_A          110 QIMVFVGETGSGKTTQIPQFVL  131 (773)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999998887743

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.43  E-value=0.087  Score=41.18  Aligned_cols=21  Identities=24%  Similarity=0.214  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~   49 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFL   49 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999999874

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=92.39  E-value=0.071  Score=46.47  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||.|+|||++.|.++-.
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~   74 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARL   74 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999998643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.38  E-value=0.089  Score=41.93  Aligned_cols=21  Identities=14%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~   49 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFA   49 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=92.33  E-value=0.11  Score=40.77  Aligned_cols=21  Identities=29%  Similarity=0.580  Sum_probs=19.0

Q ss_pred             CcEEEEEeCCCCChHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .-.++|.|+.++|||||++.+
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l   49 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKL   49 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999976

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=92.29  E-value=0.079  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+||||+.+.++-
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHH
Confidence            5799999999999999998864

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=92.25  E-value=0.063  Score=45.51  Aligned_cols=22  Identities=36%  Similarity=0.433  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|.|||++++.++-
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            6799999999999999998864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=92.21  E-value=0.092  Score=41.20  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .-.++|.|+.++|||||++.+.
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~   49 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLC   49 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHH
Confidence            3689999999999999999874

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=92.21  E-value=0.097  Score=41.75  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~   55 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFA   55 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHH
Confidence            579999999999999999874

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=92.14  E-value=0.091  Score=44.57  Aligned_cols=21  Identities=33%  Similarity=0.426  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++|+||-|.||||+++.+.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~   52 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFL   52 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHH
Confidence            799999999999999999874

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=92.11  E-value=0.097  Score=41.53  Aligned_cols=21  Identities=29%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|+.++|||||++.+.
T Consensus        26 ~ki~vvG~~~~GKSsLi~~l~   46 (217)
T 2f7s_A           26 IKLLALGDSGVGKTTFLYRYT   46 (217)
T ss_dssp             EEEEEESCTTSSHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHh
Confidence            589999999999999998763

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.05  E-value=0.11  Score=41.19  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~   46 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFS   46 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHh
Confidence            689999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.98  E-value=0.11  Score=41.78  Aligned_cols=21  Identities=29%  Similarity=0.464  Sum_probs=19.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i  214 (229)
                      .-.++|+|+.++|||||++.+
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l   49 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIV   49 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHH
Confidence            368999999999999999987

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=91.97  E-value=0.11  Score=40.94  Aligned_cols=21  Identities=19%  Similarity=0.390  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~   46 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFS   46 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999998874

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=91.94  E-value=0.11  Score=47.05  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=20.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .+.++|+||.|+|||++.+.++-
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            37899999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.88  E-value=0.12  Score=46.78  Aligned_cols=24  Identities=29%  Similarity=0.501  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++|.||.|+|||.+.|.+|-
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~  228 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVAN  228 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999863

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.82  E-value=0.11  Score=44.21  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=19.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++|+||-|.|||+|++.++
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~   51 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGI   51 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHH
Confidence            589999999999999999874

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=91.71  E-value=0.1  Score=43.17  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.|+||.|.|||++.|.++-
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHHHHHH
Confidence            5789999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=91.64  E-value=0.068  Score=42.58  Aligned_cols=20  Identities=30%  Similarity=0.454  Sum_probs=18.7

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|+.++|||||++.+
T Consensus        30 ~~i~v~G~~~~GKSslin~l   49 (223)
T 4dhe_A           30 PEIAFAGRSNAGKSTAINVL   49 (223)
T ss_dssp             CEEEEEESCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHH
Confidence            68999999999999999987

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=91.64  E-value=0.092  Score=43.12  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|.||.|.||||+...++
T Consensus        59 n~ili~GPPGtGKTt~a~ala   79 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFI   79 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            689999999999999986653

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=91.64  E-value=0.16  Score=44.92  Aligned_cols=32  Identities=19%  Similarity=0.257  Sum_probs=24.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.+.|.||.|+|||||...++....  +.|-+|+
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~--~~g~~vl  106 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQ--KAGGTCA  106 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEE
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEE
Confidence            8999999999999999988765543  3455553

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=91.64  E-value=0.12  Score=43.45  Aligned_cols=23  Identities=35%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||.|.||||+.+.++-.
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~   69 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARE   69 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHHH
Confidence            46999999999999999988543

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.62  E-value=0.13  Score=46.59  Aligned_cols=24  Identities=29%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++|.||.|+|||.+.|.+|-
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~  237 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAA  237 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHH
Confidence            458999999999999999998863

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=91.62  E-value=0.11  Score=45.48  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.|.++-
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.57  E-value=0.14  Score=46.57  Aligned_cols=24  Identities=29%  Similarity=0.488  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++|.||.|+|||.+.|.+|-
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~  237 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAA  237 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHH
Confidence            458999999999999999998863

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=91.54  E-value=0.13  Score=40.73  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~   51 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYT   51 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHH
Confidence            689999999999999998764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=91.38  E-value=0.13  Score=40.59  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~   50 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFK   50 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHh
Confidence            478999999999999999874

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=91.27  E-value=0.13  Score=45.36  Aligned_cols=21  Identities=33%  Similarity=0.526  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+||.|.|||++.+.++
T Consensus       149 ~~vLL~GppGtGKT~la~aia  169 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVA  169 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            789999999999999999884

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=91.23  E-value=0.065  Score=40.40  Aligned_cols=21  Identities=29%  Similarity=0.268  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+.|+||.|+|||++.|.++
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGC
T ss_pred             CcEEEECCCCccHHHHHHHHH
Confidence            568999999999999998764

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=91.19  E-value=0.13  Score=46.70  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||+|.|||++.+.++..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~  224 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            367899999999999999988654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.16  E-value=0.17  Score=46.77  Aligned_cols=32  Identities=19%  Similarity=0.273  Sum_probs=23.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ..+++|+|++|+||||++..++.  .+++.|.-|
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA~--~l~~~G~kV  132 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLAY--YYQRKGWKT  132 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH--HHHhCCCeE
Confidence            47899999999999999877653  345556544

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=91.08  E-value=0.11  Score=45.43  Aligned_cols=22  Identities=18%  Similarity=0.123  Sum_probs=19.5

Q ss_pred             CcEEEE--EeCCCCChHHHHHHHH
Q psy13262        194 PTVLLL--TGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~l--tGpN~~GKStlLk~i~  215 (229)
                      ...++|  +||.|.||||+++.++
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~   73 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTV   73 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHH
Confidence            368888  9999999999999875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=91.06  E-value=0.14  Score=40.84  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        28 ~ki~vvG~~~vGKSsL~~~l~   48 (214)
T 3q3j_B           28 CKLVLVGDVQCGKTAMLQVLA   48 (214)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHh
Confidence            689999999999999999764

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=90.98  E-value=0.13  Score=48.23  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=22.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      .+++|.|..|+|||++|+++.+..++
T Consensus       215 pHlLIaG~TGSGKS~~L~tlI~sLl~  240 (574)
T 2iut_A          215 PHLLVAGTTGSGKSVGVNAMLLSILF  240 (574)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence            79999999999999999998765443

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=90.93  E-value=0.16  Score=41.81  Aligned_cols=20  Identities=35%  Similarity=0.564  Sum_probs=17.7

Q ss_pred             cEEEEEeCCCCChHH-HHHHH
Q psy13262        195 TVLLLTGPNMGGKST-VMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKSt-lLk~i  214 (229)
                      .+.+||||-++|||| ||+.+
T Consensus        29 ~I~vitG~M~sGKTT~Llr~~   49 (219)
T 3e2i_A           29 WIECITGSMFSGKSEELIRRL   49 (219)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            899999999999999 66664

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=90.92  E-value=0.085  Score=48.26  Aligned_cols=33  Identities=24%  Similarity=0.046  Sum_probs=26.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|+.|.|||||+-.++..... +.|-||+
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~-~~g~~vl  275 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGT-AMGKKVG  275 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTT-TSCCCEE
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHH-hcCCcEE
Confidence            89999999999999999888765432 2376664

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=90.83  E-value=0.13  Score=43.10  Aligned_cols=23  Identities=30%  Similarity=0.369  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||.|+|||++.+.++-.
T Consensus        39 ~~~ll~G~~G~GKt~la~~l~~~   61 (319)
T 2chq_A           39 PHLLFSGPPGTGKTATAIALARD   61 (319)
T ss_dssp             CCEEEESSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECcCCcCHHHHHHHHHHH
Confidence            35999999999999999988543

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=90.74  E-value=0.18  Score=46.32  Aligned_cols=23  Identities=35%  Similarity=0.550  Sum_probs=20.3

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||.|+|||++.|.++-
T Consensus       238 ~~~vLL~GppGtGKT~lAraia~  260 (489)
T 3hu3_A          238 PRGILLYGPPGTGKTLIARAVAN  260 (489)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcEEEECcCCCCHHHHHHHHHH
Confidence            36899999999999999998853

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.61  E-value=0.17  Score=40.86  Aligned_cols=20  Identities=30%  Similarity=0.320  Sum_probs=18.0

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.++|.|+.+.|||||++.+
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~   57 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIF   57 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47999999999999999875

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=90.47  E-value=0.097  Score=44.77  Aligned_cols=22  Identities=23%  Similarity=0.166  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|.||.|.|||++.+.++-
T Consensus        47 ~~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            5799999999999999998864

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.36  E-value=0.17  Score=45.52  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.1

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++|.||.|+|||.+.|.+|-
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~  204 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAH  204 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHH
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHH
Confidence            347899999999999999998863

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=90.29  E-value=0.098  Score=44.74  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+|||++.|.++-
T Consensus        46 ~~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            4599999999999999998864

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=90.25  E-value=0.21  Score=45.05  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.++|.||.|+|||++.+.++-.
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~   86 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQE   86 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHH
Confidence            68999999999999999988654

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=90.22  E-value=0.2  Score=41.99  Aligned_cols=21  Identities=24%  Similarity=0.294  Sum_probs=18.9

Q ss_pred             EEEEEeCCCCChHHHHHHHHH
Q psy13262        196 VLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       196 ~~~ltGpN~~GKStlLk~i~l  216 (229)
                      .++|+||.|.|||++.+.++-
T Consensus        44 ~~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           44 HMIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            499999999999999998854

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=90.21  E-value=0.25  Score=42.89  Aligned_cols=20  Identities=35%  Similarity=0.356  Sum_probs=17.4

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|+.|+||||+...+
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l  164 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALEL  164 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHH
Confidence            78999999999999986543

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=90.20  E-value=0.19  Score=42.17  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=18.4

Q ss_pred             EEEEEeCCCCChHHHHHHHH
Q psy13262        196 VLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       196 ~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++|.++.|||||++.+.
T Consensus       101 ~v~~vG~~~vGKSslin~l~  120 (262)
T 3cnl_A          101 RVLIVGVPNTGKSTIINKLK  120 (262)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             heEEeCCCCCCHHHHHHHHh
Confidence            78999999999999999874

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=90.17  E-value=0.28  Score=41.80  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=27.5

Q ss_pred             CcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        194 PTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       194 ~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                      .++++|||+. |.||||+  ++.|+..||+.|..|++
T Consensus       104 ~kvI~vts~kgG~GKTtv--a~nLA~~lA~~G~rVLL  138 (299)
T 3cio_A          104 NNILMITGATPDSGKTFV--SSTLAAVIAQSDQKVLF  138 (299)
T ss_dssp             CCEEEEEESSSSSCHHHH--HHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEECCCCCCChHHH--HHHHHHHHHhCCCcEEE
Confidence            4799999985 7799998  56777788999987763

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=90.09  E-value=0.14  Score=44.43  Aligned_cols=22  Identities=9%  Similarity=0.166  Sum_probs=20.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+.|+||.|.|||++.|.++
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~   66 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVM   66 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999999884

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=90.08  E-value=0.19  Score=44.82  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=22.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      .+++|.|+.|+|||++++.+....+  +.|.++
T Consensus        54 ~h~~i~G~tGsGKs~~~~~li~~~~--~~g~~v   84 (437)
T 1e9r_A           54 RHLLVNGATGTGKSVLLRELAYTGL--LRGDRM   84 (437)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHH--HTTCEE
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH--HCCCcE
Confidence            7999999999999999876644332  245443

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=90.07  E-value=0.16  Score=46.13  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|.||.|+||||+.|.++-
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~   72 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAK   72 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=89.81  E-value=0.33  Score=41.23  Aligned_cols=34  Identities=26%  Similarity=0.380  Sum_probs=27.6

Q ss_pred             CcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        194 PTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       194 ~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                      .++++|||+. |.||||+  ++.|+..||+.|..|++
T Consensus        92 ~kvI~vts~kgG~GKTtv--a~nLA~~lA~~G~rVLL  126 (286)
T 3la6_A           92 NNVLMMTGVSPSIGMTFV--CANLAAVISQTNKRVLL  126 (286)
T ss_dssp             CCEEEEEESSSSSSHHHH--HHHHHHHHHTTTCCEEE
T ss_pred             CeEEEEECCCCCCcHHHH--HHHHHHHHHhCCCCEEE
Confidence            4788898876 6799998  56777889999988763

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=89.78  E-value=0.21  Score=45.25  Aligned_cols=22  Identities=27%  Similarity=0.594  Sum_probs=19.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++++|..|+||||+.+.++
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La   60 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLT   60 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHH
Confidence            3689999999999999999875

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=89.78  E-value=0.2  Score=42.50  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=19.3

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...+++.||.|.|||++.+.++
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la   69 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALC   69 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHH
T ss_pred             CeEEEeeCcCCCCHHHHHHHHH
Confidence            3678889999999999999885

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=89.70  E-value=0.35  Score=40.65  Aligned_cols=33  Identities=27%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             CcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        194 PTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       194 ~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      .+++.|||+. |.||||+  ++.|+..||+.|..|+
T Consensus        82 ~kvI~vts~kgG~GKTt~--a~nLA~~lA~~G~rVL  115 (271)
T 3bfv_A           82 VQSIVITSEAPGAGKSTI--AANLAVAYAQAGYKTL  115 (271)
T ss_dssp             CCEEEEECSSTTSSHHHH--HHHHHHHHHHTTCCEE
T ss_pred             CeEEEEECCCCCCcHHHH--HHHHHHHHHhCCCeEE
Confidence            4789999874 6799998  5667778899998776

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=89.60  E-value=0.23  Score=41.38  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.+++.|+.|+|||||++.+.
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~   60 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSII   60 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            589999999999999998874

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=89.59  E-value=0.25  Score=43.39  Aligned_cols=23  Identities=43%  Similarity=0.693  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      -.++|.|...|||||++|++=++
T Consensus        33 ~klLlLG~geSGKST~~KQmkii   55 (353)
T 1cip_A           33 VKLLLLGAGESGKSTIVKQMKII   55 (353)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEEcCCCCCchhHHHHHHHh
Confidence            58899999999999999998654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=89.56  E-value=0.25  Score=46.94  Aligned_cols=30  Identities=33%  Similarity=0.305  Sum_probs=23.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCC
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENP  226 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~  226 (229)
                      ..++|+|..|+||||+.|.++-  .|.+.|.+
T Consensus        53 ~lIvLtGlsGSGKSTlAr~La~--~L~~~G~~   82 (630)
T 1x6v_B           53 CTVWLTGLSGAGKTTVSMALEE--YLVCHGIP   82 (630)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH--HHHHTTCC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHH--HHHhcCCe
Confidence            7899999999999999998743  23344554

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=89.54  E-value=0.24  Score=41.13  Aligned_cols=21  Identities=29%  Similarity=0.325  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|..|+|||||++.+.
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~   57 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLI   57 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999998763

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=89.51  E-value=0.21  Score=41.70  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|..++|||||+..+.
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~   47 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            689999999999999999884

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=89.45  E-value=0.26  Score=46.33  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      +.++|+|+.|+||||+++.+
T Consensus       165 ~~~vi~G~pGTGKTt~l~~l  184 (608)
T 1w36_D          165 RISVISGGPGTGKTTTVAKL  184 (608)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHH
Confidence            79999999999999998866

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.18  E-value=0.24  Score=45.35  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.5

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++|.||.|+|||.+.|.+|-
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~  265 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVAN  265 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHh
Confidence            468999999999999999998863

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=89.18  E-value=0.44  Score=43.66  Aligned_cols=26  Identities=19%  Similarity=0.078  Sum_probs=22.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      +.++|.||+|.|||||++.+....-.
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~  177 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQ  177 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhh
Confidence            78999999999999999988665443

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.15  E-value=0.29  Score=44.39  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.3

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.++|.||.|+|||.+.|.+|-
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~  238 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVAN  238 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHH
T ss_pred             CCCCCceECCCCchHHHHHHHHHH
Confidence            458999999999999999998863

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=89.13  E-value=0.27  Score=46.09  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|+|+.|+||||+.|.++
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La  417 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQ  417 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHH
Confidence            3679999999999999999874

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=88.95  E-value=0.29  Score=47.79  Aligned_cols=23  Identities=35%  Similarity=0.585  Sum_probs=20.9

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+.++|.||.|+|||++.|.++
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA  259 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVA  259 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHH
Confidence            45889999999999999999886

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=88.82  E-value=0.2  Score=48.90  Aligned_cols=24  Identities=21%  Similarity=0.217  Sum_probs=20.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||+|+|||++++.++-.
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~  214 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQR  214 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHH
Confidence            357899999999999999988654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=88.39  E-value=0.41  Score=41.28  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=29.6

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      .++++|+|.=|-||||.  ++-|+..||+.|.=|+
T Consensus        48 aKVIAIaGKGGVGKTTt--avNLA~aLA~~GkkVl   80 (314)
T 3fwy_A           48 AKVFAVYGKGGIGKSTT--SSNLSAAFSILGKRVL   80 (314)
T ss_dssp             CEEEEEECSTTSSHHHH--HHHHHHHHHHTTCCEE
T ss_pred             ceEEEEECCCccCHHHH--HHHHHHHHHHCCCeEE
Confidence            38999999999999998  7888999999998765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=88.35  E-value=0.32  Score=44.95  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|.+|+||||+-+.++
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La   56 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLT   56 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4689999999999999998874

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=88.33  E-value=0.41  Score=43.13  Aligned_cols=29  Identities=17%  Similarity=0.261  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCC
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMEN  225 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~  225 (229)
                      ..++|+|+-|+||||+++.++  ..|.+.|.
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~--~~l~~~~~   74 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFII--EALISTGE   74 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH--HHHHHTTC
T ss_pred             CEEEEEeCCCCCHHHHHHHHH--HHHHhcCC
Confidence            499999999999999997653  33444443

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=88.20  E-value=0.38  Score=45.37  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ...+|.||.|.|||+.+-  .++..+.+.|..|+
T Consensus       206 ~~~lI~GPPGTGKT~ti~--~~I~~l~~~~~~IL  237 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVV--EIILQAVKQGLKVL  237 (646)
T ss_dssp             SEEEEECCTTSCHHHHHH--HHHHHHHHTTCCEE
T ss_pred             CceEEECCCCCCHHHHHH--HHHHHHHhCCCeEE
Confidence            589999999999998854  34444555677765

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=87.69  E-value=0.39  Score=44.27  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=20.2

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+.++|+||-|.||||+.+.++
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~  168 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAV  168 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHH
Confidence            35899999999999999998774

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=87.48  E-value=0.11  Score=40.95  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus        31 ~ki~v~G~~~~GKSsli~~l~   51 (204)
T 3th5_A           31 IKCVVVGDGAVGKTCLLISYT   51 (204)
Confidence            578999999999999997763

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=87.61  E-value=0.32  Score=41.51  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=20.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|.|||++.+.++-
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHH
T ss_pred             CcEEEECCCCchHHHHHHHHHH
Confidence            6789999999999999999865

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=87.53  E-value=0.5  Score=41.42  Aligned_cols=35  Identities=26%  Similarity=0.225  Sum_probs=27.6

Q ss_pred             CCcEEEEEe-CCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        193 KPTVLLLTG-PNMGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       193 ~~~~~~ltG-pN~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                      ..++++++| .-|.||||+  ++.|+..||+.|..|++
T Consensus       142 ~~kvIav~s~KGGvGKTT~--a~nLA~~La~~g~rVll  177 (373)
T 3fkq_A          142 KSSVVIFTSPCGGVGTSTV--AAACAIAHANMGKKVFY  177 (373)
T ss_dssp             SCEEEEEECSSTTSSHHHH--HHHHHHHHHHHTCCEEE
T ss_pred             CceEEEEECCCCCChHHHH--HHHHHHHHHhCCCCEEE
Confidence            457788775 788999999  66777888888988763

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=87.23  E-value=0.28  Score=45.20  Aligned_cols=22  Identities=32%  Similarity=0.437  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+.|.||.|.|||++.|.++-
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~   63 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKF   63 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGG
T ss_pred             CeeEeecCchHHHHHHHHHHHH
Confidence            6899999999999999999864

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=87.07  E-value=0.5  Score=38.19  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=25.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCccC
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQLI  229 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~~  229 (229)
                      ..++|.++||-||||+  .+|+..=.+..|..|++
T Consensus        29 g~i~v~tG~GkGKTTa--A~GlalRA~g~G~rV~~   61 (196)
T 1g5t_A           29 GIIIVFTGNGKGKTTA--AFGTAARAVGHGKNVGV   61 (196)
T ss_dssp             CCEEEEESSSSCHHHH--HHHHHHHHHHTTCCEEE
T ss_pred             ceEEEECCCCCCHHHH--HHHHHHHHHHCCCeEEE
Confidence            4666677799999998  57777777788988763

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=86.98  E-value=0.083  Score=41.46  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=17.7

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.++|.|+.++|||||++.+
T Consensus        34 ~ki~vvG~~~~GKSsli~~l   53 (199)
T 3l0i_B           34 FKLLLIGDSGVGKSCLLLRF   53 (199)
T ss_dssp             EEEEEECCTTSCCTTTTTSS
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47899999999999998764

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=86.79  E-value=0.43  Score=44.37  Aligned_cols=32  Identities=28%  Similarity=0.285  Sum_probs=23.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ...++|+|+.|+||||+.+.++-  .+.+.|.++
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~--~L~~~G~~~  403 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILAT--MLQARGRKV  403 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH--HHHHTTCCE
T ss_pred             ceEEEccCCCCCCHHHHHHHHHH--HhhhcCCeE
Confidence            36899999999999999998743  233445443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=86.17  E-value=0.42  Score=46.64  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||+|.|||++.|.++-.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~  611 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAAT  611 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            58999999999999999988654

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=85.99  E-value=0.55  Score=39.31  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=25.1

Q ss_pred             cEEEEEe---CCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTG---PNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltG---pN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ++++|++   .-|.||||+-  +.|+..||+.|..|+
T Consensus        35 ~~i~v~~~s~KGGvGKTT~a--~nLA~~la~~G~rVl   69 (298)
T 2oze_A           35 EAIVILNNYFKGGVGKSKLS--TMFAYLTDKLNLKVL   69 (298)
T ss_dssp             SCEEEEECCSSSSSSHHHHH--HHHHHHHHHTTCCEE
T ss_pred             cEEEEEeccCCCCchHHHHH--HHHHHHHHhCCCeEE
Confidence            5677776   7899999994  556678889998876

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=85.86  E-value=0.51  Score=45.17  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.0

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||.|+|||++.+.++..
T Consensus       207 ~~~vlL~G~~GtGKT~la~~la~~  230 (758)
T 1r6b_X          207 KNNPLLVGESGVGKTAIAEGLAWR  230 (758)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEcCCCCCHHHHHHHHHHH
Confidence            378999999999999999988653

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=85.82  E-value=0.57  Score=39.67  Aligned_cols=23  Identities=22%  Similarity=0.458  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|.||.|.|||.+.+.++-
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~  126 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHh
Confidence            46899999999999999997764

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=85.61  E-value=0.91  Score=39.64  Aligned_cols=24  Identities=25%  Similarity=0.210  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      .++.|.||.|+|||||+-+++...
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~   52 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSY   52 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999977765443

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=85.49  E-value=0.63  Score=41.66  Aligned_cols=24  Identities=38%  Similarity=0.637  Sum_probs=21.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      -.++|.|+-.|||||++|++=++.
T Consensus        41 ~klLLLG~geSGKSTi~KQmkiih   64 (402)
T 1azs_C           41 HRLLLLGAGESGKSTIVKQMRILH   64 (402)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ceEEEecCCCCchhhHHHHHHHHh
Confidence            588999999999999999986653

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=85.33  E-value=0.65  Score=48.85  Aligned_cols=31  Identities=19%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.++|.||+|.|||||+..++....  +.|-+|
T Consensus       733 ~lVlI~G~PG~GKTtLal~lA~~aa--~~g~~V  763 (1706)
T 3cmw_A          733 RIVEIYGPESSGKTTLTLQVIAAAQ--REGKTC  763 (1706)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH--HTTCCE
T ss_pred             ceEEEECCCCCCcHHHHHHHHHHHH--HcCCCe
Confidence            8999999999999999998876554  345454

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=85.27  E-value=0.44  Score=41.10  Aligned_cols=20  Identities=30%  Similarity=0.612  Sum_probs=18.1

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.++|.|+.++|||||++.+
T Consensus       166 ~kI~ivG~~~vGKSsLl~~l  185 (329)
T 3o47_A          166 MRILMVGLDAAGKTTILYKL  185 (329)
T ss_dssp             EEEEEEESTTSSHHHHHHHT
T ss_pred             ceEEEECCCCccHHHHHHHH
Confidence            57999999999999999875

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=84.82  E-value=0.59  Score=42.53  Aligned_cols=21  Identities=19%  Similarity=0.281  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|+.++|||||++.+.
T Consensus       225 ~kV~ivG~~nvGKSSLln~L~  245 (462)
T 3geh_A          225 LKVAIVGRPNVGKSSLLNAWS  245 (462)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHh
Confidence            469999999999999999874

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=84.82  E-value=0.62  Score=39.16  Aligned_cols=21  Identities=14%  Similarity=0.227  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|.|+.++|||||++.+.
T Consensus       156 ~~i~i~G~~~~GKssli~~~~  176 (332)
T 2wkq_A          156 IKCVVVGDGAVGKTCLLISYT  176 (332)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCChHHHHHHHH
Confidence            579999999999999998764

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=84.75  E-value=0.73  Score=43.32  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ...+|.||.|+|||+++..+.. .++.+.|..|+
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~-~l~~~~~~~il  228 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVY-HLARQGNGPVL  228 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHH-HHHTSSSCCEE
T ss_pred             CCeEEECCCCCCHHHHHHHHHH-HHHHcCCCeEE
Confidence            6899999999999999865532 22233565554

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=84.68  E-value=0.69  Score=44.27  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..++|+||.|+|||++.|.++-.
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~  511 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKA  511 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHH
Confidence            47999999999999999988643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=84.66  E-value=0.51  Score=41.87  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|..-+||||||+.+.
T Consensus        73 a~V~ivG~PNvGKSTL~n~Lt   93 (376)
T 4a9a_A           73 ASVGFVGFPSVGKSTLLSKLT   93 (376)
T ss_dssp             EEEEEECCCCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHh
Confidence            689999999999999999873

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=84.61  E-value=0.6  Score=44.83  Aligned_cols=24  Identities=21%  Similarity=0.192  Sum_probs=20.8

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||.|.|||++.+.++-.
T Consensus       201 ~~~vLL~G~pGtGKT~la~~la~~  224 (758)
T 3pxi_A          201 KNNPVLIGEPGVGKTAIAEGLAQQ  224 (758)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHH
Confidence            367999999999999999988654

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=84.04  E-value=0.86  Score=39.43  Aligned_cols=17  Identities=41%  Similarity=0.370  Sum_probs=15.8

Q ss_pred             cEEEEEeCCCCChHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVM  211 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlL  211 (229)
                      ..++|+|+.|+||||+.
T Consensus       148 ~gvli~G~sG~GKStla  164 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECA  164 (312)
T ss_dssp             EEEEEEESSSSSHHHHH
T ss_pred             EEEEEEcCCCCCHHHHH
Confidence            78999999999999985

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=83.71  E-value=0.87  Score=40.98  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=21.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ++..|.|+.|.||||++++|+-..
T Consensus       176 QR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          176 QRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             CEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             ceEEEecCCCCChhHHHHHHHHHH
Confidence            899999999999999998876543

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=83.66  E-value=0.83  Score=44.45  Aligned_cols=33  Identities=24%  Similarity=0.352  Sum_probs=23.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      ...+|+||.|.||||++..+. ..++.+.|..|+
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i-~~l~~~~~~~il  404 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIV-YHLARQGNGPVL  404 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHH-HHHHTTCSSCEE
T ss_pred             CeEEEEcCCCCCHHHHHHHHH-HHHHHcCCCcEE
Confidence            689999999999999986553 222333555554

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=83.50  E-value=0.62  Score=43.07  Aligned_cols=21  Identities=10%  Similarity=-0.015  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++|+|..||||||+=|.++
T Consensus       396 ~~I~l~GlsGsGKSTIa~~La  416 (511)
T 1g8f_A          396 FSIVLGNSLTVSREQLSIALL  416 (511)
T ss_dssp             EEEEECTTCCSCHHHHHHHHH
T ss_pred             eEEEecccCCCCHHHHHHHHH
Confidence            689999999999999988774

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=83.47  E-value=0.71  Score=42.89  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=18.7

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|..++|||||++.+
T Consensus        66 ~~V~vvG~~n~GKSTLIN~L   85 (550)
T 2qpt_A           66 PMVLVAGQYSTGKTSFIQYL   85 (550)
T ss_dssp             CEEEEEEBTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            68999999999999999876

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=83.32  E-value=0.9  Score=38.38  Aligned_cols=21  Identities=33%  Similarity=0.400  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|..+.|||||++.+.
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~  141 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLA  141 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             ceEEEEecCCCchHHHHHHHh
Confidence            579999999999999999873

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=83.14  E-value=0.6  Score=41.47  Aligned_cols=21  Identities=29%  Similarity=0.374  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..|+|-|+-|+||||+++.++
T Consensus        50 ~fIt~EG~dGsGKTT~~~~La   70 (376)
T 1of1_A           50 LRVYIDGPHGMGKTTTTQLLV   70 (376)
T ss_dssp             EEEEECSSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            679999999999999999874

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=82.72  E-value=0.9  Score=43.59  Aligned_cols=24  Identities=25%  Similarity=0.382  Sum_probs=20.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..+.|+||.|.|||++.|.++-..
T Consensus       522 ~~~Ll~Gp~GtGKT~lA~ala~~l  545 (758)
T 3pxi_A          522 GSFIFLGPTGVGKTELARALAESI  545 (758)
T ss_dssp             EEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            379999999999999999886544

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=82.45  E-value=0.95  Score=41.12  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.3

Q ss_pred             CCcEEEEEeCCCCChHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++.+|.|+-|+||||+++.+
T Consensus       160 ~~~v~~I~G~aGsGKTt~I~~~  181 (446)
T 3vkw_A          160 SAKVVLVDGVPGCGKTKEILSR  181 (446)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHH
T ss_pred             cccEEEEEcCCCCCHHHHHHHH
Confidence            4578999999999999999765

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=82.28  E-value=0.75  Score=42.26  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=19.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -.++|+|..++|||||++.+.
T Consensus        42 ~kV~lvG~~~vGKSSLl~~l~   62 (535)
T 3dpu_A           42 IKVHLIGDGMAGKTSLLKQLI   62 (535)
T ss_dssp             EEEEEESSSCSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999874

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=82.27  E-value=0.52  Score=40.95  Aligned_cols=20  Identities=25%  Similarity=0.494  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|..++||||||..+
T Consensus        32 ~~I~vvG~~~~GKSSLln~L   51 (353)
T 2x2e_A           32 PQIAVVGGQSAGKSSVLENF   51 (353)
T ss_dssp             CEEEEECBTTSSHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHH
Confidence            58999999999999999877

>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*

Probab=81.96  E-value=1.8  Score=36.05  Aligned_cols=33  Identities=27%  Similarity=0.245  Sum_probs=28.0

Q ss_pred             CCcEEEEEeCC-CCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        193 KPTVLLLTGPN-MGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       193 ~~~~~~ltGpN-~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.+.+.|+|.+ ++|||+.  +++|+..|.+.|.-|
T Consensus        25 ~m~~i~Itgt~t~vGKT~v--t~gL~~~l~~~G~~V   58 (251)
T 3fgn_A           25 HMTILVVTGTGTGVGKTVV--CAALASAARQAGIDV   58 (251)
T ss_dssp             SCEEEEEEESSTTSCHHHH--HHHHHHHHHHTTCCE
T ss_pred             CCCEEEEEeCCCCCcHHHH--HHHHHHHHHHCCCeE
Confidence            34789999998 8999998  788999999998755

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=81.85  E-value=0.6  Score=40.74  Aligned_cols=20  Identities=30%  Similarity=0.260  Sum_probs=17.7

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+|..++||||||+.+
T Consensus       159 a~V~lvG~~nvGKSTLln~L  178 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVV  178 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHS
T ss_pred             CeeeeeCCCCCCHHHHHHHH
Confidence            35889999999999999875

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=81.23  E-value=1.1  Score=41.23  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++|+|+-|.|||||.+.++
T Consensus       152 ~~vv~I~G~gGvGKTtLA~~v~  173 (549)
T 2a5y_B          152 SFFLFLHGRAGSGKSVIASQAL  173 (549)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHH
Confidence            4899999999999999988765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=80.46  E-value=1.7  Score=35.49  Aligned_cols=31  Identities=16%  Similarity=0.100  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      ...+++||=++||||.|-..+.-.  ...|..|
T Consensus        29 ~l~vitG~MgsGKTT~lL~~a~r~--~~~g~kV   59 (214)
T 2j9r_A           29 WIEVICGSMFSGKSEELIRRVRRT--QFAKQHA   59 (214)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH--HHTTCCE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHH--HHCCCEE
Confidence            789999999999999876554433  3345444

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=80.09  E-value=0.8  Score=41.81  Aligned_cols=20  Identities=30%  Similarity=0.496  Sum_probs=18.3

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.++|+|+.++|||||++.+
T Consensus       234 ~kV~ivG~~nvGKSSLln~L  253 (476)
T 3gee_A          234 VSTVIAGKPNAGKSTLLNTL  253 (476)
T ss_dssp             EEEEEECCTTSSHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            46999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	229
d1ewqa2	224	c.37.1.12 (A:542-765) DNA repair protein MutS, the	2e-04

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} Length = 224

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 15/63 (23%)

Query: 161 YPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLITIL 220
           +P       ++PN   +                  ++L+TGPNM GKST +RQ  LI +L
Sbjct: 17  HPVVERRTEFVPNDLEMA---------------HELVLITGPNMAGKSTFLRQTALIALL 61

Query: 221 AQM 223
           AQ+
Sbjct: 62  AQV 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	229
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	99.84
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	99.83
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.81
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.79
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.78
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.75
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.74
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.71
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.67
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.66
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.63
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.63
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.6
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.58
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.56
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.51
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.5
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.43
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.43
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.38
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.43
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.96
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.4
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.32
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.14
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.06
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	95.91
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	95.9
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.65
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.64
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.62
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.54
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	95.49
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.47
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.26
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.22
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	95.15
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.03
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.85
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	94.78
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.61
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.52
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.47
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.41
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.05
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	93.98
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.89
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	93.62
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	93.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	93.28
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	93.16
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	93.12
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	92.91
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	92.86
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.71
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	92.55
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.52
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.76
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	91.56
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.08
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	90.96
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	90.5
d1xpua3	289	Transcription termination factor Rho, ATPase domai	90.05
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	89.73
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	89.27
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.84
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	88.7
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	88.44
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	88.08
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	86.48
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	84.96
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	84.54
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	83.79
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	83.75
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	83.21
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	83.11
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	83.02
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	82.05
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	81.95

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=1.5e-21  Score=163.36  Aligned_cols=73  Identities=36%  Similarity=0.543  Sum_probs=65.4

Q ss_pred             CccceEecCCCCCceEEeccccCcccC--CCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        139 VCVPTFLGLEEPHPYISALESLYPCAT--GDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       139 ~~~P~~~~~~~~~~~i~~~~~~hpll~--~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ||+|++.++    +.++++++|||++.  ....+||||+.+++             +.+.++|||||||||||+||++||
T Consensus         1 y~~P~~~~~----~~l~i~~~rHPlle~~~~~~~VpNdi~l~~-------------~~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2           1 YTCPTFIDK----PGIRITEGRHPVVEQVLNEPFIANPLNLSP-------------QRRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CBCCEECSS----SCEEEEEECCTTHHHHCSSCCCCEEEEECS-------------SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCEEcCC----CcEEEEEeECCEEEcccCCCccceeEEECC-------------CceEEEEeccCchhhHHHHHHHHH
Confidence            689999874    67999999999984  23579999999986             458999999999999999999999


Q ss_pred             HHHHHhcCCCcc
Q psy13262        217 ITILAQMENPQL  228 (229)
Q Consensus       217 ~~~ma~~G~~v~  228 (229)
                      +++|||+|+|||
T Consensus        64 ~~~laq~G~~Vp   75 (234)
T d1wb9a2          64 IALMAYIGSYVP   75 (234)
T ss_dssp             HHHHHTTTCCBS
T ss_pred             HHHHHHcCCeEe
Confidence            999999999998

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=99.83  E-value=1.6e-21  Score=162.25  Aligned_cols=69  Identities=32%  Similarity=0.492  Sum_probs=63.1

Q ss_pred             CccceEecCCCCCceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        139 VCVPTFLGLEEPHPYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       139 ~~~P~~~~~~~~~~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ||+|++.++      ++++++|||++.....+||||+.+++               +.++|||||+|||||+||++|+++
T Consensus         1 y~~P~~~~~------~~i~~~rHPlle~~~~~VpNdi~~~~---------------~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2           1 YVRPRFGDR------LQIRAGRHPVVERRTEFVPNDLEMAH---------------ELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             CBCCEESSS------EEEEEECCTTGGGTSCCCCEEEEESS---------------CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             CCCCccCCc------EEEEeCcCCEEcCCCCeecceEEeCC---------------cEEEEECCCccccchhhhhhHHHH
Confidence            689999763      78899999999755689999999986               799999999999999999999999


Q ss_pred             HHHhcCCCcc
Q psy13262        219 ILAQMENPQL  228 (229)
Q Consensus       219 ~ma~~G~~v~  228 (229)
                      +|||+|+|||
T Consensus        60 ilAq~G~~vp   69 (224)
T d1ewqa2          60 LLAQVGSFVP   69 (224)
T ss_dssp             HHHTTTCCBS
T ss_pred             HHHhccceee
Confidence            9999999998

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.81  E-value=1.7e-09  Score=89.53  Aligned_cols=48  Identities=21%  Similarity=0.295  Sum_probs=43.3

Q ss_pred             ceEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        152 PYISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       152 ~~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ++++++++        ...|++...++++||++++|       ++++|.||||+|||||||++
T Consensus         5 ~~Lev~~l--------~k~yg~~~al~~vs~~i~~G-------ei~~liGpnGaGKSTl~~~i   52 (240)
T d1ji0a_           5 IVLEVQSL--------HVYYGAIHAIKGIDLKVPRG-------QIVTLIGANGAGKTTTLSAI   52 (240)
T ss_dssp             EEEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEeeE--------EEEECCEEEEeeeeEEECCC-------CEEEEECCCCCcHHHHHHHH
Confidence            57788776        55678888999999999999       99999999999999999998

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.79  E-value=2.1e-09  Score=88.56  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=37.3

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...|++...++++||++++|       ++++|.||||||||||||+++
T Consensus         7 ~k~yg~~~~l~~isl~i~~G-------ei~~liGpsGsGKSTLl~~i~   47 (232)
T d2awna2           7 TKAWGEVVVSKDINLDIHEG-------EFVVFVGPSGCGKSTLLRMIA   47 (232)
T ss_dssp             EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCEEEEeeeEEEEcCC-------CEEEEECCCCChHHHHHHHHh
Confidence            34568888999999999999       999999999999999999984

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.78  E-value=2.4e-09  Score=88.48  Aligned_cols=47  Identities=23%  Similarity=0.392  Sum_probs=41.3

Q ss_pred             EEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        154 ISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       154 i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      |+++++        ...|++...+++++|++++|       ++++|.||||||||||||+++
T Consensus         7 I~v~nl--------sk~yg~~~al~~vsl~v~~G-------e~~~liGpsGaGKSTLl~~i~   53 (239)
T d1v43a3           7 VKLENL--------TKRFGNFTAVNKLNLTIKDG-------EFLVLLGPSGCGKTTTLRMIA   53 (239)
T ss_dssp             EEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEE--------EEEECCEEEEcceeEEECCC-------CEEEEECCCCChHHHHHHHHH
Confidence            566665        45568889999999999999       999999999999999999984

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.75  E-value=3.3e-09  Score=87.69  Aligned_cols=48  Identities=21%  Similarity=0.378  Sum_probs=41.5

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++++++        ...+++...++++||++++|       ++++|.|||||||||+||+++
T Consensus         3 ~i~v~nl--------~k~yg~~~al~~vsl~i~~G-------e~~~liG~sGaGKSTll~~i~   50 (240)
T d1g2912           3 GVRLVDV--------WKVFGEVTAVREMSLEVKDG-------EFMILLGPSGCGKTTTLRMIA   50 (240)
T ss_dssp             EEEEEEE--------EEEETTEEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEeE--------EEEECCEEEEcceeeEEcCC-------CEEEEECCCCChHHHHHHHHh
Confidence            4566665        45567888999999999999       999999999999999999984

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.75  E-value=2e-09  Score=86.66  Aligned_cols=35  Identities=31%  Similarity=0.566  Sum_probs=32.8

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++++|++++|       ++++|+||||+|||||||+++
T Consensus        14 ~~vl~~is~~i~~G-------ei~~l~G~NGsGKSTLl~~i~   48 (200)
T d1sgwa_          14 KPVLERITMTIEKG-------NVVNFHGPNGIGKTTLLKTIS   48 (200)
T ss_dssp             SEEEEEEEEEEETT-------CCEEEECCTTSSHHHHHHHHT
T ss_pred             CeEEeceEEEEcCC-------CEEEEECCCCChHHHHHHHHh
Confidence            46899999999999       999999999999999999983

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.74  E-value=4.1e-09  Score=87.81  Aligned_cols=48  Identities=25%  Similarity=0.392  Sum_probs=41.9

Q ss_pred             eEEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++++++        ...+++...++++||++++|       ++++|.||||+|||||+|++.
T Consensus         4 iL~v~nl--------sk~yg~~~aL~~vs~~v~~G-------ei~~liG~nGaGKSTLl~~i~   51 (254)
T d1g6ha_           4 ILRTENI--------VKYFGEFKALDGVSISVNKG-------DVTLIIGPNGSGKSTLINVIT   51 (254)
T ss_dssp             EEEEEEE--------EEEETTEEEEEEECCEEETT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             eEEEEEE--------EEEECCeEEEcceEEEECCC-------CEEEEECCCCCcHHHHHHHHH
Confidence            4666665        55678888999999999999       999999999999999999983

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=4.3e-09  Score=86.95  Aligned_cols=40  Identities=28%  Similarity=0.495  Sum_probs=37.5

Q ss_pred             ceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        168 QTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       168 ~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...++....+++++|++++|       ++++|.||||+|||||||.+
T Consensus         9 ~k~yg~~~vl~~vs~~v~~G-------ei~glvG~nGaGKSTLl~~l   48 (238)
T d1vpla_           9 RKRIGKKEILKGISFEIEEG-------EIFGLIGPNGAGKTTTLRII   48 (238)
T ss_dssp             EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHH
T ss_pred             EEEECCEEEEccceeEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            45678899999999999999       99999999999999999998

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.67  E-value=6.7e-09  Score=86.74  Aligned_cols=47  Identities=19%  Similarity=0.341  Sum_probs=40.8

Q ss_pred             EEeccccCcccCCCceeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        154 ISALESLYPCATGDQTYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       154 i~~~~~~hpll~~~~~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++++        ...|+....++++||++++|       ++++|+||||||||||+|+++
T Consensus         3 Lev~nl--------~k~yg~~~al~~vs~~i~~G-------Ei~~iiG~sGsGKSTLl~~i~   49 (258)
T d1b0ua_           3 LHVIDL--------HKRYGGHEVLKGVSLQARAG-------DVISIIGSSGSGKSTFLRCIN   49 (258)
T ss_dssp             EEEEEE--------EEEETTEEEEEEEEEEECTT-------CEEEEECCTTSSHHHHHHHHT
T ss_pred             EEEEEE--------EEEECCEEEEcceeeEEcCC-------CEEEEECCCCCcHHHHHHHHH
Confidence            556665        44567888999999999999       999999999999999999983

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.66  E-value=4.9e-09  Score=86.07  Aligned_cols=39  Identities=23%  Similarity=0.360  Sum_probs=34.6

Q ss_pred             eeeCCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        169 TYIPNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       169 ~~vp~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++ ..++++||++++|       ++++|.|||||||||+||+++
T Consensus         9 k~y~~-~aL~~vs~~i~~G-------e~~~liGpsGaGKSTll~~l~   47 (229)
T d3d31a2           9 RKWKN-FSLDNLSLKVESG-------EYFVILGPTGAGKTLFLELIA   47 (229)
T ss_dssp             EECSS-CEEEEEEEEECTT-------CEEEEECCCTHHHHHHHHHHH
T ss_pred             EEeCC-EEEeeeEEEECCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            33454 6899999999999       999999999999999999984

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.63  E-value=8.3e-09  Score=85.24  Aligned_cols=34  Identities=24%  Similarity=0.392  Sum_probs=32.0

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++|+++.|       ++++|.||||||||||||+++
T Consensus        19 ~al~~vsl~i~~G-------e~~~iiG~sGsGKSTLl~~i~   52 (240)
T d3dhwc1          19 QALNNVSLHVPAG-------QIYGVIGASGAGKSTLIRCVN   52 (240)
T ss_dssp             EEEEEEEEEECSS-------CEEEEEESTTSSHHHHHHHHT
T ss_pred             EEeeceeEEEcCC-------CEEEEECCCCCCHHHHHHHHc
Confidence            4799999999999       999999999999999999983

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.63  E-value=6.1e-09  Score=86.17  Aligned_cols=37  Identities=22%  Similarity=0.491  Sum_probs=33.7

Q ss_pred             eCC-eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        171 IPN-STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       171 vp~-~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      |++ ..+|++++|++++|       +.++|+||||||||||+|++
T Consensus        11 Y~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTLl~ll   48 (242)
T d1mv5a_          11 YDDSEQILRDISFEAQPN-------SIIAFAGPSGGGKSTIFSLL   48 (242)
T ss_dssp             SSSSSCSEEEEEEEECTT-------EEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCCceeeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            444 46899999999999       99999999999999999998

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.60  E-value=9.5e-09  Score=84.40  Aligned_cols=33  Identities=24%  Similarity=0.546  Sum_probs=31.4

Q ss_pred             EecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        176 VIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       176 ~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .+++++|+++.|       ++++|.||||||||||||+++
T Consensus        20 al~~isl~i~~G-------e~~~iiG~sGsGKSTLl~~i~   52 (230)
T d1l2ta_          20 ALKNVNLNIKEG-------EFVSIMGPSGSGKSTMLNIIG   52 (230)
T ss_dssp             EEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHHT
T ss_pred             EEeceEEEEcCC-------CEEEEECCCCCCcchhhHhcc
Confidence            689999999999       999999999999999999884

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.58  E-value=9.7e-09  Score=84.91  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=33.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      -..+++++|++++|       ++++|.||||||||||||+++.
T Consensus        18 ~~aL~~vsl~i~~G-------e~~~iiG~sGsGKSTll~~i~g   53 (242)
T d1oxxk2          18 VVALDNVNINIENG-------ERFGILGPSGAGKTTFMRIIAG   53 (242)
T ss_dssp             EEEEEEEEEEECTT-------CEEEEECSCHHHHHHHHHHHHT
T ss_pred             EEEEeceEEEECCC-------CEEEEECCCCCcHHHHHHHHHc
Confidence            35799999999999       9999999999999999999853

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1.5e-08  Score=84.24  Aligned_cols=47  Identities=32%  Similarity=0.376  Sum_probs=38.9

Q ss_pred             eEEeccccCcccCCCceeeCCe---eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        153 YISALESLYPCATGDQTYIPNS---TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       153 ~i~~~~~~hpll~~~~~~vp~~---~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      -|+++++        .-.||+.   ..|++++|++++|       +.++|+||||||||||+|++
T Consensus        11 ~I~~~nv--------sf~Y~~~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTLl~li   60 (251)
T d1jj7a_          11 LVQFQDV--------SFAYPNRPDVLVLQGLTFTLRPG-------EVTALVGPNGSGKSTVAALL   60 (251)
T ss_dssp             CEEEEEE--------EECCTTSTTCCSEEEEEEEECTT-------CEEEEECSTTSSHHHHHHHH
T ss_pred             eEEEEEE--------EEECCCCCCCEeEeceEEEEcCC-------CEEEEECCCCCcHHHHHHHH
Confidence            3777766        2234542   4799999999999       99999999999999999988

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=2.5e-08  Score=82.34  Aligned_cols=34  Identities=21%  Similarity=0.421  Sum_probs=32.1

Q ss_pred             eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        174 STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       174 ~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...|++++|++++|       +.++|+||||||||||+|++
T Consensus        16 ~~vL~~isl~i~~G-------e~vaIvG~sGsGKSTLl~ll   49 (241)
T d2pmka1          16 PVILDNINLSIKQG-------EVIGIVGRSGSGKSTLTKLI   49 (241)
T ss_dssp             CEEEEEEEEEEETT-------CEEEEECSTTSSHHHHHHHH
T ss_pred             cceEeeeEEEEcCC-------CEEEEECCCCCCHHHHHHHH
Confidence            35899999999999       99999999999999999998

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.50  E-value=3e-08  Score=83.63  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=33.7

Q ss_pred             CCeeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        172 PNSTVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       172 p~~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..+.+|++++|++++|       ++++|+||||+|||||||++
T Consensus        47 ~g~pvL~~isl~i~~G-------e~vaivG~nGsGKSTLl~~i   82 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKG-------EMLAITGSTGSGKTSLLMLI   82 (281)
T ss_dssp             TTCEEEEEEEEEECTT-------CEEEEEESTTSSHHHHHHHH
T ss_pred             CCCeEEeCeEEEEcCC-------CEEEEECCCCChHHHHHHHH
Confidence            4567999999999999       99999999999999999988

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=2.9e-08  Score=81.41  Aligned_cols=34  Identities=38%  Similarity=0.671  Sum_probs=31.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++++||++++|       ++++|.||||+|||||||++.
T Consensus        13 ~~l~~isl~I~~G-------ei~~iiG~nGaGKSTLl~~l~   46 (231)
T d1l7vc_          13 TRLGPLSGEVRAG-------EILHLVGPNGAGKSTLLARMA   46 (231)
T ss_dssp             TTSCSEEEEEETT-------CEEECBCCTTSSHHHHHHHHH
T ss_pred             ceecCEEEEEcCC-------CEEEEECCCCCcHHHHHHHHh
Confidence            4688999999999       999999999999999999884

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.43  E-value=5.6e-08  Score=80.75  Aligned_cols=33  Identities=21%  Similarity=0.366  Sum_probs=31.6

Q ss_pred             eEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        175 TVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..|++++|++++|       ++++|+||||||||||+|++
T Consensus        29 ~~L~~isl~i~~G-------e~iaivG~sGsGKSTLl~ll   61 (253)
T d3b60a1          29 PALRNINLKIPAG-------KTVALVGRSGSGKSTIASLI   61 (253)
T ss_dssp             CSEEEEEEEECTT-------CEEEEEECTTSSHHHHHHHH
T ss_pred             ceeeceEEEEcCC-------CEEEEECCCCChHHHHHHHH
Confidence            4799999999999       99999999999999999988

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.38  E-value=5.6e-08  Score=80.84  Aligned_cols=46  Identities=20%  Similarity=0.317  Sum_probs=37.9

Q ss_pred             EEeccccCcccCCCceeeCC--eeEecCccceeccCCCCCCCCcEEEEEeCCCCChHHHHHHH
Q psy13262        154 ISALESLYPCATGDQTYIPN--STVIGRCKEDVESGGEGNRKPTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       154 i~~~~~~hpll~~~~~~vp~--~~~l~~~~~~~~~~~~~~~~~~~~~ltGpN~~GKStlLk~i  214 (229)
                      |+++++        .-.||+  ...|++++|++++|       +.++|+||||||||||||++
T Consensus        17 I~~~nv--------sf~Y~~~~~~vL~~isl~i~~G-------e~vaivG~sGsGKSTLl~ll   64 (255)
T d2hyda1          17 IDIDHV--------SFQYNDNEAPILKDINLSIEKG-------ETVAFVGMSGGGKSTLINLI   64 (255)
T ss_dssp             EEEEEE--------EECSCSSSCCSEEEEEEEECTT-------CEEEEECSTTSSHHHHHTTT
T ss_pred             EEEEEE--------EEEeCCCCCcceeceEEEEcCC-------CEEEEECCCCCcHHHHHHHH
Confidence            677665        222444  35899999999999       99999999999999999987

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.96  E-value=0.00023  Score=60.58  Aligned_cols=23  Identities=30%  Similarity=0.587  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...+|+||||+|||++|..|.++
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~~~   48 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAISFV   48 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.40  E-value=0.0011  Score=52.66  Aligned_cols=23  Identities=26%  Similarity=0.263  Sum_probs=20.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||.|+||||+.+.++-
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHH
Confidence            47899999999999999998763

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.32  E-value=0.00095  Score=52.59  Aligned_cols=23  Identities=35%  Similarity=0.376  Sum_probs=20.2

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++|+||+|+||||+.|.++=
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHH
Confidence            36799999999999999998854

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.14  E-value=0.0014  Score=51.35  Aligned_cols=22  Identities=27%  Similarity=0.416  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||+|+||||+.|.++-
T Consensus        34 ~~lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          34 PHMLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChHHHHHHHHH
Confidence            4589999999999999999864

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.06  E-value=0.002  Score=51.27  Aligned_cols=23  Identities=30%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +..++|.||.|+||||+.+.++-
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999998754

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=95.91  E-value=0.0029  Score=50.96  Aligned_cols=33  Identities=30%  Similarity=0.211  Sum_probs=27.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +.++|.|+.|+|||+|+-.+++... .+.|.||+
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a-~~~g~~v~   68 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWG-TAMGKKVG   68 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH-HTSCCCEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhh-hhccccee
Confidence            8999999999999999998876543 35588875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=95.90  E-value=0.0021  Score=50.70  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=19.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..++++||.|+||||+.|.++
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la   56 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIA   56 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            579999999999999999875

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.65  E-value=0.0025  Score=50.35  Aligned_cols=22  Identities=45%  Similarity=0.395  Sum_probs=19.5

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+||||+.+.++-
T Consensus        34 ~~lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          34 PHLLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             CCEEEECSTTSSHHHHHHTHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999998764

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.00099  Score=52.28  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+||||+.+.++-
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCChhHHHHHHHH
Confidence            4588999999999999998864

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.62  E-value=0.0037  Score=52.69  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++||||.|+|||||+..++.
T Consensus        54 ~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          54 TLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEeeCCCCCCHHHHHHHHHH
Confidence            47999999999999999998753

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.54  E-value=0.0045  Score=48.73  Aligned_cols=24  Identities=25%  Similarity=0.189  Sum_probs=20.9

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ....++|+||.|.|||+++|.++-
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~   65 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWE   65 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHH
Confidence            347999999999999999998753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=95.49  E-value=0.0038  Score=49.20  Aligned_cols=23  Identities=35%  Similarity=0.381  Sum_probs=20.2

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ...++++||.|.||||+.|.++-
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999998863

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.0039  Score=48.77  Aligned_cols=22  Identities=23%  Similarity=0.282  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|+||.|+||||+.+.++-
T Consensus        37 ~~~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          37 PHMIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCchhhHHHHHH
Confidence            4689999999999999998853

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.26  E-value=0.0052  Score=53.02  Aligned_cols=21  Identities=38%  Similarity=0.548  Sum_probs=19.1

Q ss_pred             CcEEEEEeCCCCChHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i  214 (229)
                      ...++|+||.||||||+|..+
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~  178 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAG  178 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHH
T ss_pred             hceEEEEcCCCCCccHHHHHH
Confidence            379999999999999999876

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.22  E-value=0.0085  Score=48.21  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=23.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQ  227 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v  227 (229)
                      +.++++||.|+|||++.|.++-     .+|+|+
T Consensus        43 ~giLl~GppGtGKT~la~aia~-----~~~~~~   70 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAG-----EARVPF   70 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHH-----HTTCCE
T ss_pred             ceEEEecCCCCChhHHHHHHHH-----HcCCCE
Confidence            6799999999999999999983     456664

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.15  E-value=0.0064  Score=47.80  Aligned_cols=21  Identities=24%  Similarity=0.306  Sum_probs=19.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++++|+||-|+|||++++.++
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH
Confidence            799999999999999999764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.03  E-value=0.0041  Score=52.28  Aligned_cols=20  Identities=20%  Similarity=0.453  Sum_probs=18.1

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      ..++|+||.|+||||+|+.+
T Consensus       167 ~nili~G~tgSGKTT~l~al  186 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSI  186 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHH
T ss_pred             CCEEEEeeccccchHHHHHH
Confidence            56899999999999999876

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.85  E-value=0.014  Score=44.75  Aligned_cols=26  Identities=23%  Similarity=0.224  Sum_probs=21.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITIL  220 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~m  220 (229)
                      +.+.|.|++|+|||+|.-+++...+.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~~~   52 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNGII   52 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999998777654443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=94.78  E-value=0.0096  Score=48.20  Aligned_cols=21  Identities=24%  Similarity=0.493  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +.++|+||.|+|||++.|.++
T Consensus        46 ~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHH
Confidence            789999999999999999886

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.61  E-value=0.011  Score=49.59  Aligned_cols=23  Identities=35%  Similarity=0.328  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..+++||||.|+|||||+-.++.
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHH
Confidence            37899999999999999998764

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.52  E-value=0.017  Score=45.10  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=21.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..++|.||.|+|||+++.+++...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            899999999999999998886653

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.47  E-value=0.011  Score=47.48  Aligned_cols=22  Identities=27%  Similarity=0.539  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|.||.|+|||++.|.++-
T Consensus        41 ~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            6799999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.41  E-value=0.015  Score=46.82  Aligned_cols=22  Identities=32%  Similarity=0.460  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|.||.|+|||++.|.++-
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            6799999999999999997754

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.05  E-value=0.016  Score=44.61  Aligned_cols=25  Identities=24%  Similarity=0.211  Sum_probs=22.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITI  219 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~  219 (229)
                      ++++|+|+.|+|||+|.-.++...+
T Consensus        35 ~l~~i~G~~G~GKT~~~l~~a~~~~   59 (258)
T d2i1qa2          35 SVTEFAGVFGSGKTQIMHQSCVNLQ   59 (258)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999988877653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.98  E-value=0.016  Score=44.72  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=20.2

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.+.|+||.|+||||+.-+++..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            89999999999999998877543

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.018  Score=46.54  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.++|.||.|+|||++.+.++-
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            6899999999999999999853

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.62  E-value=0.021  Score=45.41  Aligned_cols=20  Identities=20%  Similarity=0.378  Sum_probs=18.8

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      +..+++|+.|.|||||++.+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L  115 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAI  115 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHhh
Confidence            78999999999999999976

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=93.36  E-value=0.028  Score=43.68  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=19.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.++|+||.|+|||||.-+++-.
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            89999999999999998666443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.029  Score=43.45  Aligned_cols=24  Identities=17%  Similarity=0.176  Sum_probs=20.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      +.+.|+||.|+|||++.-+++..+
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            899999999999999988776544

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=93.16  E-value=0.014  Score=45.94  Aligned_cols=20  Identities=20%  Similarity=0.034  Sum_probs=17.7

Q ss_pred             EEEEEeCCCCChHHHHHHHH
Q psy13262        196 VLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       196 ~~~ltGpN~~GKStlLk~i~  215 (229)
                      ++.|+||.|.|||+++|.++
T Consensus        48 ~l~l~GppGtGKT~l~~~l~   67 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTV   67 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHH
Confidence            56678999999999999885

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=93.12  E-value=0.024  Score=46.81  Aligned_cols=22  Identities=32%  Similarity=0.561  Sum_probs=19.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +.+++.||.|+|||.+.|+++-
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            5778999999999999998864

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.91  E-value=0.036  Score=43.56  Aligned_cols=22  Identities=27%  Similarity=0.443  Sum_probs=18.9

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ...++|+||+|.||||+.+.++
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~   55 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLA   55 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHH
Confidence            3578999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.035  Score=46.04  Aligned_cols=21  Identities=33%  Similarity=0.415  Sum_probs=18.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      -+++|.|+.|+||||+-+.+.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCCCcHHHHHHH
Confidence            689999999999999988774

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.031  Score=47.43  Aligned_cols=32  Identities=28%  Similarity=0.369  Sum_probs=23.8

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHhcCCCcc
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQMENPQL  228 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~~G~~v~  228 (229)
                      +++.|+|+.|+|||++|+.+... ++ ..|.++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~-~~-~~g~~~i   82 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT-GL-LRGDRMV   82 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH-HH-HTTCEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH-HH-hCCCCEE
Confidence            78999999999999999876433 23 3465553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.55  E-value=0.043  Score=45.06  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=18.2

Q ss_pred             CcEEEEEeCCCCChHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i  214 (229)
                      +-+++|.|+-||||||+-+.+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHH
Confidence            357889999999999998766

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.52  E-value=0.081  Score=41.75  Aligned_cols=23  Identities=39%  Similarity=0.351  Sum_probs=21.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +..+|+|+.|.|||||+-.+++.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~   52 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQ   52 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHH
Confidence            79999999999999999888764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.76  E-value=0.049  Score=43.58  Aligned_cols=20  Identities=25%  Similarity=0.413  Sum_probs=18.5

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.++|.|..|+||||+++++
T Consensus        33 l~I~LvG~tg~GKSSliN~i   52 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSI   52 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHH
Confidence            57899999999999999987

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=91.56  E-value=0.022  Score=45.51  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=18.6

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      +..++.|+.|.|||||++.+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L  117 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAI  117 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHhh
Confidence            68899999999999999987

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.048  Score=46.02  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.0

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      +..+|+||-|+||||++..+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            79999999999999998654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=90.96  E-value=0.084  Score=39.48  Aligned_cols=21  Identities=29%  Similarity=0.387  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      .++.|.|+=|+|||||.|.++
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~   54 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGML   54 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHH
Confidence            789999999999999999775

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=90.50  E-value=0.095  Score=44.21  Aligned_cols=23  Identities=35%  Similarity=0.424  Sum_probs=20.0

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++++.||.|.|||++.+.++
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~  175 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALL  175 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHH
Confidence            34799999999999999988764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=90.05  E-value=0.18  Score=41.29  Aligned_cols=28  Identities=14%  Similarity=0.282  Sum_probs=24.1

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHHh
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLITILAQ  222 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~~ma~  222 (229)
                      ++.+|.|+.|+||||++..++-.+...+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~~~~~   71 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSIAYNH   71 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHHC
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHHhhcC
Confidence            8999999999999999999977665443

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=89.73  E-value=0.085  Score=45.77  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +.+++.||.|+|||-+.|++|-+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.27  E-value=0.11  Score=40.34  Aligned_cols=23  Identities=17%  Similarity=0.309  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..+.|.||.|+|||-|++.++--
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHHHHHH
Confidence            34889999999999999988654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.84  E-value=0.17  Score=40.60  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      +++.|.||+|+||||++=+++..+
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~   78 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAA   78 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHH
Confidence            899999999999999976665544

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=88.70  E-value=0.16  Score=41.76  Aligned_cols=23  Identities=35%  Similarity=0.445  Sum_probs=20.6

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..+.++||.|.|||.+.|+++-+
T Consensus        53 ~~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          53 GSFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcchhHHHHHHHHhh
Confidence            57889999999999999998765

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=88.44  E-value=0.086  Score=43.32  Aligned_cols=22  Identities=36%  Similarity=0.404  Sum_probs=19.9

Q ss_pred             cEEEEEeCCCCChHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      ..++|.||-|.||||++|.++-
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHH
T ss_pred             CeEEEECCCCccHHHHHHHHHH
Confidence            4799999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.08  E-value=0.18  Score=40.47  Aligned_cols=22  Identities=32%  Similarity=0.329  Sum_probs=19.3

Q ss_pred             CcEEEEEeCCCCChHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~  215 (229)
                      ..+++|+|.-|.|||||.+.+.
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~   65 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQAL   65 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4789999999999999988763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.48  E-value=0.2  Score=42.58  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.4

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      -.++|+|..|+|||||++.+
T Consensus        57 l~Iai~G~~n~GKSSLiNaL   76 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTL   76 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46999999999999999987

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.96  E-value=0.25  Score=39.92  Aligned_cols=20  Identities=35%  Similarity=0.483  Sum_probs=18.3

Q ss_pred             cEEEEEeCCCCChHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQL  214 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i  214 (229)
                      .++.|+||-.+|||+||..+
T Consensus        33 ~vvsi~G~~~sGKS~llN~l   52 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKL   52 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            58889999999999999876

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=84.54  E-value=0.43  Score=38.32  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=19.7

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      +++.|.||.++|||++.-+++..
T Consensus        58 ~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          58 RITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCccchHHHHHHHHHH
Confidence            89999999999999998666443

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=83.79  E-value=0.44  Score=38.14  Aligned_cols=24  Identities=25%  Similarity=0.483  Sum_probs=20.8

Q ss_pred             CCcEEEEEeCCCCChHHHHHHHHH
Q psy13262        193 KPTVLLLTGPNMGGKSTVMRQLGL  216 (229)
Q Consensus       193 ~~~~~~ltGpN~~GKStlLk~i~l  216 (229)
                      +..++.|.||-+.|||+|+.++.-
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~  126 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAH  126 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHH
Confidence            458999999999999999988743

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=83.75  E-value=0.45  Score=36.46  Aligned_cols=25  Identities=20%  Similarity=0.200  Sum_probs=20.9

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ...++|+||.|.|||++..-++.-.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri   67 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHH
Confidence            3688999999999999998776543

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=83.21  E-value=0.43  Score=38.34  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=20.4

Q ss_pred             CcEEEEEeCCCCChHHHHHHHHHH
Q psy13262        194 PTVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       194 ~~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ...++|+||.|.|||++.+-++.-
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHH
Confidence            468899999999999999876543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=83.11  E-value=0.33  Score=40.12  Aligned_cols=23  Identities=26%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      .+++++||.|+|||.+-|.++..
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHH
Confidence            46777999999999999988654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.02  E-value=0.51  Score=37.91  Aligned_cols=21  Identities=33%  Similarity=0.465  Sum_probs=18.3

Q ss_pred             cEEEEEeCCCCChHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLG  215 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~  215 (229)
                      +++.|.||+++||||++-+++
T Consensus        61 ~i~e~~G~~~~GKT~l~l~~~   81 (269)
T d1mo6a1          61 RVIEIYGPESSGKTTVALHAV   81 (269)
T ss_dssp             SEEEEECSSSSSHHHHHHHHH
T ss_pred             eeEEEecCCCcHHHHHHHHHH
Confidence            899999999999999965443

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=82.05  E-value=0.43  Score=39.96  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=20.0

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLI  217 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~  217 (229)
                      ..+++.||.|+|||-+-|++|-.
T Consensus        69 ~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          69 SNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cceeeeCCCCccHHHHHHHHHhh
Confidence            56888899999999999998743

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=81.95  E-value=0.45  Score=38.91  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=20.4

Q ss_pred             cEEEEEeCCCCChHHHHHHHHHHH
Q psy13262        195 TVLLLTGPNMGGKSTVMRQLGLIT  218 (229)
Q Consensus       195 ~~~~ltGpN~~GKStlLk~i~l~~  218 (229)
                      ..+.++||.|.|||.+.|.++-..
T Consensus        54 ~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          54 GSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCcchHHHHHHHHHHHh
Confidence            478899999999999999887553