Psyllid ID: psy14486

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470--

MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI

cccEEEEEccccccccccccccccEEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccEEEEccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEEccccccEEEEEc

cccEEEEEccccccccccEcccccEEEEEEccEEEEccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccEEEEccccccccEEEEEcccccccccccccHHHHHcccccccccccccccHEHEHcccccccccccccccccccccccEEEEHHHHHHHccccEEEccccccccccccHHHHHHHHccccccEEEEEEEccEEEEcccHHccccccHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHcccccHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccEEEccccccEEEEEc

mstlriynsfsrkkqifypitpgkvslYVCGitaydychlgHARLMIVFDIVQRWLRINNydvtyvrnitDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSlllhiqppdyqpcatnyIPQILKMIEKLIFNGLayqnnngkingdvnysVRNFLNYGKLSGRLISSNFNkineknnfkkdplDFALWkvsknndpyeirwnskwgagrpgwhiecSAMSCYllgshfdihgggqdlkfphheneiaqsegaykHKFVNYWMHSGfvkinnkkmsksfgnfCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKdipkinykkiidlnepHAKRFIIAmnddfntpVAISILFDLANIINKNKSIKMAKQLRGLGNWlglleyssdeflknniyterkknvnysendiKLKIYFRSEARKRKNFLEADKIRQELVNNgiiledmpngktewrri

mstlriynsfsrkkqifypitpgkVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNkineknnfkkdpLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNiyterkknvnysendikLKIYFRSEARKRKNfleadkirqelvnngiiledmpngktewrri

MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLissnfnkineknnfkkDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI

****RIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIIL*************

*STLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLI************FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNI*********YSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI

*STLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNFNKINEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYT*****VNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		472	2.2.26 [Sep-21-2011]
A6SZV1		464	Cysteine--tRNA ligase OS=	yes	N/A	0.978	0.995	0.578	1e-166
A4G4M2		462	Cysteine--tRNA ligase OS=	yes	N/A	0.974	0.995	0.580	1e-163
Q0KCA9		462	Cysteine--tRNA ligase OS=	yes	N/A	0.974	0.995	0.569	1e-161
Q473D3		462	Cysteine--tRNA ligase OS=	yes	N/A	0.974	0.995	0.574	1e-161
B2U9P8		463	Cysteine--tRNA ligase OS=	yes	N/A	0.976	0.995	0.565	1e-159
B3R4D1		462	Cysteine--tRNA ligase OS=	yes	N/A	0.974	0.995	0.574	1e-159
Q8Y077		465	Cysteine--tRNA ligase OS=	yes	N/A	0.980	0.995	0.565	1e-158
A4JFD0		465	Cysteine--tRNA ligase OS=	yes	N/A	0.983	0.997	0.560	1e-158
A0K8K2		465	Cysteine--tRNA ligase OS=	yes	N/A	0.983	0.997	0.564	1e-156
Q1BHP1		465	Cysteine--tRNA ligase OS=	yes	N/A	0.983	0.997	0.564	1e-156

>sp\|A6SZV1\|SYC_JANMA Cysteine--tRNA ligase OS=Janthinobacterium sp. (strain Marseille) GN=cysS PE=3 SV=1	Back alignment and function desciption

 Score =  583 bits (1504), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 273/472 (57%), Positives = 350/472 (74%), Gaps = 10/472 (2%)

Query: 1   MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
           MS L+IYN+ +R+KQ F PI PGKV +YVCG+T YDYCH+GHAR+M+VFD+VQRWLR + 
Sbjct: 1   MSALKIYNTLAREKQPFTPIEPGKVRMYVCGMTVYDYCHIGHARVMVVFDLVQRWLRASG 60

Query: 61  YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
           Y+V YVRNITDIDDKII  A +N ESI  LT RFI A  ED+  L +Q PD++P ATNY+
Sbjct: 61  YEVNYVRNITDIDDKIIKRAAENGESISALTQRFIDAMDEDAAALGVQKPDHEPRATNYV 120

Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
           PQ+L +IE L  NGLAY++++G    DVNYSVR+F  YGKLSG+ +      +  + N  
Sbjct: 121 PQMLGLIEALERNGLAYKSSDG----DVNYSVRDFPGYGKLSGKSLDDLRAGERVDVNTG 176

Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
           K+DPLDF LWK SK  +P E++W SKWG+GRPGWHIECSAM+C LLG  FDIHGGG DL+
Sbjct: 177 KRDPLDFVLWKSSKEAEPDEVKWASKWGSGRPGWHIECSAMACELLGQQFDIHGGGADLQ 236

Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
           FPHHENEIAQSEGA +H FVNYWMH+GFV+++N+KMSKS GNF TIR++L KY+ EV+RF
Sbjct: 237 FPHHENEIAQSEGASQHTFVNYWMHNGFVRVDNEKMSKSLGNFFTIREVLAKYDSEVVRF 296

Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
           FILR+HYRS +NYS+ +L+ A+ +L R+Y A+K +     +  +D+ E HA RF  AMND
Sbjct: 297 FILRAHYRSQLNYSDAHLDDARNALTRMYTALKGVAP--DQAALDMTEAHALRFAEAMND 354

Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERKKNV 419
           DFNTP+A+++LF+LAN INK KS  +A+QL GL   +GLL+  + +FL   +       +
Sbjct: 355 DFNTPLAVAVLFELANEINKTKSPALARQLVGLAGIVGLLQRPAQQFLHAGLANGEDGEM 414

Query: 420 NYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
              E  +  +I  R  A+K KNF EAD+IR EL+  GIILED P G TEWRR
Sbjct: 415 ---ETFVVEQIEARVNAKKAKNFAEADRIRAELLEKGIILEDKPGGLTEWRR 463

Janthinobacterium sp. (strain Marseille) (taxid: 375286)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 6

>sp\|A4G4M2\|SYC_HERAR Cysteine--tRNA ligase OS=Herminiimonas arsenicoxydans GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q0KCA9\|SYC_CUPNH Cysteine--tRNA ligase OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q473D3\|SYC_CUPPJ Cysteine--tRNA ligase OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|B2U9P8\|SYC_RALPJ Cysteine--tRNA ligase OS=Ralstonia pickettii (strain 12J) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|B3R4D1\|SYC_CUPTR Cysteine--tRNA ligase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q8Y077\|SYC_RALSO Cysteine--tRNA ligase OS=Ralstonia solanacearum (strain GMI1000) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A4JFD0\|SYC_BURVG Cysteine--tRNA ligase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|A0K8K2\|SYC_BURCH Cysteine--tRNA ligase OS=Burkholderia cenocepacia (strain HI2424) GN=cysS PE=3 SV=1	Back alignment and function description

>sp\|Q1BHP1\|SYC_BURCA Cysteine--tRNA ligase OS=Burkholderia cenocepacia (strain AU 1054) GN=cysS PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		472
340787525		473	cysteinyl-tRNA synthetase [Collimonas fu	0.985	0.983	0.579	1e-165
399018068		465	cysteinyl-tRNA synthetase [Herbaspirillu	0.980	0.995	0.599	1e-164
152980026		464	cysteinyl-tRNA synthetase [Janthinobacte	0.978	0.995	0.578	1e-164
409405694		463	cysteinyl-tRNA synthetase [Herbaspirillu	0.976	0.995	0.578	1e-163
398832797		494	cysteinyl-tRNA synthetase [Herbaspirillu	0.972	0.929	0.572	1e-162
237745445		462	cysteinyl-tRNA synthetase [Oxalobacter f	0.974	0.995	0.580	1e-162
300311195		463	cysteinyl-tRNA synthetase [Herbaspirillu	0.976	0.995	0.586	1e-162
134094511		462	cysteinyl-tRNA synthetase [Herminiimonas	0.974	0.995	0.580	1e-162
386333865		465	cysteinyl-trna synthetase (cysteine--trn	0.980	0.995	0.563	1e-161
390568854		465	cysteinyl-tRNA ligase [Burkholderia terr	0.983	0.997	0.568	1e-160

>gi\|340787525\|ref\|YP_004752990.1\| cysteinyl-tRNA synthetase [Collimonas fungivorans Ter331] gi\|340552792\|gb\|AEK62167.1\| Cysteinyl-tRNA synthetase [Collimonas fungivorans Ter331]	Back alignment and taxonomy information

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 277/478 (57%), Positives = 353/478 (73%), Gaps = 13/478 (2%)

Query: 1   MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINN 60
           MS L+IYN+ +R+KQ F PI PGKV +YVCG+T YDYCHLGH R+M+VFD+VQRWLR + 
Sbjct: 1   MSDLKIYNTLAREKQPFSPIEPGKVRMYVCGMTVYDYCHLGHGRVMVVFDMVQRWLRQSG 60

Query: 61  YDVTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYI 120
            DVTYVRNITDIDDKII  A +N E+I  LT RFI+A  ED+  L +Q PD++P AT ++
Sbjct: 61  LDVTYVRNITDIDDKIIKRAVENGETISQLTGRFIQAMDEDAAALGVQKPDHEPRATAFV 120

Query: 121 PQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISS-NFNKINEKNNF 179
           PQ+L +IEKL   GLAYQ ++G    DVNYSVR+F  YGKLSG+ +      +  + N  
Sbjct: 121 PQMLALIEKLEHKGLAYQGSDG----DVNYSVRDFAGYGKLSGKSLDDLRAGERVDVNLG 176

Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
           K+DPLDF LWK +K+++P E++W S+WG GRPGWHIECSAM+  LLG  FDIHGGGQDL+
Sbjct: 177 KRDPLDFVLWKAAKDSEPEEVKWTSRWGQGRPGWHIECSAMAEQLLGEQFDIHGGGQDLQ 236

Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
           FPHHENEIAQSEGA+ H+FVNYWMH+GFV+I+++KMSKS GNF TIRD+LKKY+ EV+RF
Sbjct: 237 FPHHENEIAQSEGAHGHRFVNYWMHNGFVRIDDEKMSKSLGNFFTIRDVLKKYDAEVVRF 296

Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
           FILR+HYRS +NY++  L+ AK +L RLY A+K++   +    +D +E HA R   AM+D
Sbjct: 297 FILRAHYRSPLNYADSNLDDAKHALTRLYTALKEVSADSLP--LDWSEAHAARVAQAMDD 354

Query: 360 DFNTPVAISILFDLANIINKNKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTERK--- 416
           DFNTP+AIS LFDLAN +NKN+S   A+QL+GL   LGLL+ S ++FLK       +   
Sbjct: 355 DFNTPMAISALFDLANEVNKNRSQAAARQLKGLAGVLGLLQRSPEDFLKGRALAGGEVVG 414

Query: 417 ---KNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
                   SE DI LKI  R  A+  K+F  AD IR+EL+  GI+LED P G+TEWRR
Sbjct: 415 NGIAQAALSEQDILLKIQTRQAAKIAKDFSAADLIRKELLAEGILLEDKPGGQTEWRR 472

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|399018068\|ref\|ZP_10720254.1\| cysteinyl-tRNA synthetase [Herbaspirillum sp. CF444] gi\|398102033\|gb\|EJL92225.1\| cysteinyl-tRNA synthetase [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

>gi\|152980026\|ref\|YP_001353798.1\| cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille] gi\|166200150\|sp\|A6SZV1.1\|SYC_JANMA RecName: Full=Cysteine--tRNA ligase; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS gi\|151280103\|gb\|ABR88513.1\| Cysteinyl-tRNA synthetase [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|409405694\|ref\|ZP_11254156.1\| cysteinyl-tRNA synthetase [Herbaspirillum sp. GW103] gi\|386434243\|gb\|EIJ47068.1\| cysteinyl-tRNA synthetase [Herbaspirillum sp. GW103]	Back alignment and taxonomy information

>gi\|398832797\|ref\|ZP_10590948.1\| cysteinyl-tRNA synthetase [Herbaspirillum sp. YR522] gi\|398222691\|gb\|EJN09059.1\| cysteinyl-tRNA synthetase [Herbaspirillum sp. YR522]	Back alignment and taxonomy information

>gi\|237745445\|ref\|ZP_04575925.1\| cysteinyl-tRNA synthetase [Oxalobacter formigenes HOxBLS] gi\|229376796\|gb\|EEO26887.1\| cysteinyl-tRNA synthetase [Oxalobacter formigenes HOxBLS]	Back alignment and taxonomy information

>gi\|300311195\|ref\|YP_003775287.1\| cysteinyl-tRNA synthetase [Herbaspirillum seropedicae SmR1] gi\|300073980\|gb\|ADJ63379.1\| cysteinyl-tRNA synthetase protein [Herbaspirillum seropedicae SmR1]	Back alignment and taxonomy information

>gi\|134094511\|ref\|YP_001099586.1\| cysteinyl-tRNA synthetase [Herminiimonas arsenicoxydans] gi\|166200149\|sp\|A4G4M2.1\|SYC_HERAR RecName: Full=Cysteine--tRNA ligase; AltName: Full=Cysteinyl-tRNA synthetase; Short=CysRS gi\|133738414\|emb\|CAL61459.1\| Cysteinyl-tRNA synthetase (Cysteine--tRNA ligase) [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

>gi\|386333865\|ref\|YP_006030036.1\| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum Po82] gi\|334196315\|gb\|AEG69500.1\| cysteinyl-trna synthetase (cysteine--trna ligase)(cysrs) protein [Ralstonia solanacearum Po82]	Back alignment and taxonomy information

>gi\|390568854\|ref\|ZP_10249146.1\| cysteinyl-tRNA ligase [Burkholderia terrae BS001] gi\|420252649\|ref\|ZP_14755752.1\| cysteinyl-tRNA synthetase [Burkholderia sp. BT03] gi\|389939203\|gb\|EIN01040.1\| cysteinyl-tRNA ligase [Burkholderia terrae BS001] gi\|398054156\|gb\|EJL46292.1\| cysteinyl-tRNA synthetase [Burkholderia sp. BT03]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		472
TIGR_CMR\|CBU_1487		460	CBU_1487 "cysteinyl-tRNA synth	0.953	0.978	0.477	1.9e-113
UNIPROTKB\|A6V727		460	cysS "Cysteine--tRNA ligase" [	0.951	0.976	0.474	3.9e-108
UNIPROTKB\|Q9KQZ9		459	cysS "Cysteine--tRNA ligase" [	0.953	0.980	0.473	4.9e-108
TIGR_CMR\|VC_1848		459	VC_1848 "cysteinyl-tRNA synthe	0.953	0.980	0.473	4.9e-108
TIGR_CMR\|SO_1791		459	SO_1791 "cysteinyl-tRNA synthe	0.953	0.980	0.469	3.1e-106
UNIPROTKB\|P21888		461	cysS [Escherichia coli K-12 (t	0.957	0.980	0.467	1.7e-105
TIGR_CMR\|CPS_3792		469	CPS_3792 "cysteinyl-tRNA synth	0.966	0.972	0.450	2.6e-102
UNIPROTKB\|Q747A2		481	cysS "Cysteine--tRNA ligase" [	0.779	0.765	0.480	1.2e-100
TIGR_CMR\|GSU_3365		481	GSU_3365 "cysteinyl-tRNA synth	0.779	0.765	0.480	1.2e-100
TAIR\|locus:2042521		563	SYCO ARATH "cysteinyl t-RNA sy	0.805	0.674	0.422	3.3e-96

TIGR_CMR\|CBU_1487 CBU_1487 "cysteinyl-tRNA synthetase" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

 Score = 1119 (399.0 bits), Expect = 1.9e-113, P = 1.9e-113
 Identities = 228/477 (47%), Positives = 314/477 (65%)

Query:     3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
             +++I+NS +++K+IF PI  GKV LYVCG+T YDY H+GH R  I+FD+V R+LR+  Y+
Sbjct:     2 SVKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYE 61

Query:    63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
             VT+VRNITDIDDKII  A +N ES   L  RFI+   ED   L +  PD +P AT Y+P+
Sbjct:    62 VTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPE 121

Query:   123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-LXXXXXXXXXXXXXXXX 181
             I+K+I+KL+ N  AY    G+ NGDV + VR F +YGKLS R L                
Sbjct:   122 IIKLIQKLLDNQYAY---TGQ-NGDVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKR 177

Query:   182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241
             DPLDF LWK +K  +P   +W+S WG GRPGWHIECSAMS  +LG  FDIHGGG DLKFP
Sbjct:   178 DPLDFVLWKKAKPGEP---KWDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLKFP 234

Query:   242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301
             HHENEIAQSE   +  FV  WMH+G ++IN +KMSKS GN  +IR+ LK+ + EV+R+F+
Sbjct:   235 HHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFL 294

Query:   302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361
             L  HYR+ ++YS+  L   + +L R YLA++ +P +N++K       +  RF  AM+DDF
Sbjct:   295 LSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEK----TSSYTDRFYEAMDDDF 350

Query:   362 NTPVAISILFDLANIINK---NKSIK----MAKQLRGLGNWLGLLEYSSDEFLKNNIYTE 414
             NTP+A ++LF++   IN+   N  I+    +A +L+ LGN  GLL+YS ++FL+      
Sbjct:   351 NTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQG----- 405

Query:   415 RKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
              KK  +  E  IK  I  R+EAR +K++  AD+IR +L + G+ +ED  +G T WR+
Sbjct:   406 AKKEADVQE--IKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG-TSWRQ 459

GO:0004817 "cysteine-tRNA ligase activity" evidence=ISS

GO:0006423 "cysteinyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB\|A6V727 cysS "Cysteine--tRNA ligase" [Pseudomonas aeruginosa PA7 (taxid:381754)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KQZ9 cysS "Cysteine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_1848 VC_1848 "cysteinyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_1791 SO_1791 "cysteinyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

UNIPROTKB\|P21888 cysS [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_3792 CPS_3792 "cysteinyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

UNIPROTKB\|Q747A2 cysS "Cysteine--tRNA ligase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TIGR_CMR\|GSU_3365 GSU_3365 "cysteinyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)]	Back alignment and assigned GO terms

TAIR\|locus:2042521 SYCO ARATH "cysteinyl t-RNA synthetase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3NWX8	SYC_BURP0	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
Q0AJJ4	SYC_NITEC	6, ., 1, ., 1, ., 1, 6	0.5231	0.9682	0.9785	yes	N/A
Q39EY8	SYC2_BURS3	6, ., 1, ., 1, ., 1, 6	0.5665	0.9830	0.9978	yes	N/A
Q9JXE6	SYC_NEIMB	6, ., 1, ., 1, ., 1, 6	0.4989	0.9576	0.9556	yes	N/A
Q63SS8	SYC_BURPS	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
Q82Y45	SYC_NITEU	6, ., 1, ., 1, ., 1, 6	0.5105	0.9682	0.9827	yes	N/A
Q7NX82	SYC_CHRVO	6, ., 1, ., 1, ., 1, 6	0.4968	0.9618	0.9934	yes	N/A
B1XUY8	SYC_POLNS	6, ., 1, ., 1, ., 1, 6	0.5270	0.9724	0.9704	yes	N/A
A1VRB4	SYC_POLNA	6, ., 1, ., 1, ., 1, 6	0.4947	0.9512	0.9697	yes	N/A
A4JFD0	SYC_BURVG	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
Q0BDV4	SYC_BURCM	6, ., 1, ., 1, ., 1, 6	0.5687	0.9830	0.9978	yes	N/A
A3ML43	SYC_BURM7	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
Q2Y7U5	SYC_NITMU	6, ., 1, ., 1, ., 1, 6	0.5265	0.9597	0.9762	yes	N/A
B9MAU5	SYC_ACIET	6, ., 1, ., 1, ., 1, 6	0.5193	0.9555	0.9847	yes	N/A
Q1BHP1	SYC_BURCA	6, ., 1, ., 1, ., 1, 6	0.5644	0.9830	0.9978	yes	N/A
A6SZV1	SYC_JANMA	6, ., 1, ., 1, ., 1, 6	0.5783	0.9788	0.9956	yes	N/A
A9AHN6	SYC_BURM1	6, ., 1, ., 1, ., 1, 6	0.5687	0.9830	0.9978	yes	N/A
A9BZ45	SYC_DELAS	6, ., 1, ., 1, ., 1, 6	0.5074	0.9512	0.9739	yes	N/A
A1V5G8	SYC_BURMS	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
B1JUK8	SYC_BURCC	6, ., 1, ., 1, ., 1, 6	0.5623	0.9830	0.9978	yes	N/A
Q5P1H8	SYC_AROAE	6, ., 1, ., 1, ., 1, 6	0.5373	0.9703	0.9934	yes	N/A
A4SX62	SYC_POLSQ	6, ., 1, ., 1, ., 1, 6	0.5354	0.9724	0.9704	yes	N/A
Q62J37	SYC_BURMA	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
Q3J8Y9	SYC_NITOC	6, ., 1, ., 1, ., 1, 6	0.4908	0.9745	0.9484	yes	N/A
B3R4D1	SYC_CUPTR	6, ., 1, ., 1, ., 1, 6	0.5741	0.9745	0.9956	yes	N/A
A3NB50	SYC_BURP6	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
C5CPX0	SYC_VARPS	6, ., 1, ., 1, ., 1, 6	0.5150	0.9576	0.9847	yes	N/A
Q473D3	SYC_CUPPJ	6, ., 1, ., 1, ., 1, 6	0.5741	0.9745	0.9956	yes	N/A
A4G4M2	SYC_HERAR	6, ., 1, ., 1, ., 1, 6	0.5805	0.9745	0.9956	yes	N/A
Q8Y077	SYC_RALSO	6, ., 1, ., 1, ., 1, 6	0.5656	0.9809	0.9956	yes	N/A
Q60BG8	SYC_METCA	6, ., 1, ., 1, ., 1, 6	0.5315	0.9639	0.9784	yes	N/A
Q2SX78	SYC_BURTA	6, ., 1, ., 1, ., 1, 6	0.5632	0.9809	0.9956	yes	N/A
Q9JWJ3	SYC_NEIMA	6, ., 1, ., 1, ., 1, 6	0.5010	0.9576	0.6466	yes	N/A
Q0KCA9	SYC_CUPNH	6, ., 1, ., 1, ., 1, 6	0.5699	0.9745	0.9956	yes	N/A
B1YSM8	SYC_BURA4	6, ., 1, ., 1, ., 1, 6	0.5687	0.9830	0.9978	yes	N/A
A0K8K2	SYC_BURCH	6, ., 1, ., 1, ., 1, 6	0.5644	0.9830	0.9978	yes	N/A
Q3JQT6	SYC_BURP1	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
B2U9P8	SYC_RALPJ	6, ., 1, ., 1, ., 1, 6	0.5656	0.9766	0.9956	yes	N/A
Q129L2	SYC_POLSJ	6, ., 1, ., 1, ., 1, 6	0.5053	0.9618	0.9826	yes	N/A
Q31H54	SYC_THICR	6, ., 1, ., 1, ., 1, 6	0.5305	0.9533	0.9868	yes	N/A
Q13X60	SYC_BURXL	6, ., 1, ., 1, ., 1, 6	0.5496	0.9830	0.9978	yes	N/A
Q3SHN1	SYC_THIDA	6, ., 1, ., 1, ., 1, 6	0.5223	0.9555	0.9933	yes	N/A
Q21YS0	SYC_RHOFD	6, ., 1, ., 1, ., 1, 6	0.4926	0.9618	0.9891	yes	N/A
Q5F5D6	SYC_NEIG1	6, ., 1, ., 1, ., 1, 6	0.5	0.9512	0.9492	yes	N/A
C1D7F5	SYC_LARHH	6, ., 1, ., 1, ., 1, 6	0.5234	0.9597	0.9912	yes	N/A
A2SAX8	SYC_BURM9	6, ., 1, ., 1, ., 1, 6	0.5602	0.9830	0.9978	yes	N/A
Q1H417	SYC_METFK	6, ., 1, ., 1, ., 1, 6	0.5456	0.9533	0.9890	yes	N/A
Q47HK6	SYC_DECAR	6, ., 1, ., 1, ., 1, 6	0.5479	0.9597	0.9934	yes	N/A
B4ED73	SYC_BURCJ	6, ., 1, ., 1, ., 1, 6	0.5687	0.9830	0.9978	yes	N/A
A1W6E1	SYC_ACISJ	6, ., 1, ., 1, ., 1, 6	0.5171	0.9555	0.9847	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	6.1.1.16	0.946
3rd Layer	6.1.1	0.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		472
PRK00260		463	PRK00260, cysS, cysteinyl-tRNA synthetase; Validat	0.0
COG0215		464	COG0215, CysS, Cysteinyl-tRNA synthetase [Translat	0.0
TIGR00435		464	TIGR00435, cysS, cysteinyl-tRNA synthetase	0.0
PRK14535		699	PRK14535, cysS, cysteinyl-tRNA synthetase; Provisi	1e-161
PLN02946		557	PLN02946, PLN02946, cysteine-tRNA ligase	1e-147
pfam01406		301	pfam01406, tRNA-synt_1e, tRNA synthetases class I	1e-146
PTZ00399		651	PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Pro	1e-116
PRK14536		490	PRK14536, cysS, cysteinyl-tRNA synthetase; Provisi	2e-98
TIGR03447		411	TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosi	4e-79
PRK12418		384	PRK12418, PRK12418, cysteinyl-tRNA synthetase; Pro	4e-78
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	3e-62
PRK14534		481	PRK14534, cysS, cysteinyl-tRNA synthetase; Provisi	1e-55
cd07963		156	cd07963, Anticodon_Ia_Cys, Anticodon-binding domai	1e-52
cd00672		213	cd00672, CysRS_core, catalytic core domain of cyst	4e-45
pfam09190		62	pfam09190, DALR_2, DALR domain	3e-19
smart00840		56	smart00840, DALR_2, This DALR domain is found in c	8e-15
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	6e-13
cd00802		143	cd00802, class_I_aaRS_core, catalytic core domain	5e-09
PRK12300		897	PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	2e-08
cd00668		312	cd00668, Ile_Leu_Val_MetRS_core, catalytic core do	1e-07
TIGR00395		938	TIGR00395, leuS_arch, leucyl-tRNA synthetase, arch	2e-07
COG0143		558	COG0143, MetG, Methionyl-tRNA synthetase [Translat	9e-07
COG0495		814	COG0495, LeuS, Leucyl-tRNA synthetase [Translation	2e-06
cd00814		319	cd00814, MetRS_core, catalytic core domain of meth	3e-06
cd00812		314	cd00812, LeuRS_core, catalytic core domain of leuc	7e-06
PRK00133		673	PRK00133, metG, methionyl-tRNA synthetase; Reviewe	8e-06
cd00674		353	cd00674, LysRS_core_class_I, catalytic core domain	3e-05
pfam09334		388	pfam09334, tRNA-synt_1g, tRNA synthetases class I	7e-05
COG1384		521	COG1384, LysS, Lysyl-tRNA synthetase (class I) [Tr	8e-05
pfam01921		357	pfam01921, tRNA-synt_1f, tRNA synthetases class I	8e-05
PRK12268		556	PRK12268, PRK12268, methionyl-tRNA synthetase; Rev	2e-04
TIGR00467		515	TIGR00467, lysS_arch, lysyl-tRNA synthetase, archa	2e-04
TIGR00398		530	TIGR00398, metG, methionyl-tRNA synthetase	3e-04
PRK00750		510	PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	5e-04
COG0060		933	COG0060, IleS, Isoleucyl-tRNA synthetase [Translat	6e-04
PRK11893		511	PRK11893, PRK11893, methionyl-tRNA synthetase; Rev	7e-04
PLN02959		1084	PLN02959, PLN02959, aminoacyl-tRNA ligase	8e-04
cd07955		81	cd07955, Anticodon_Ia_Cys_like, Anticodon-binding	0.002
PRK12267		648	PRK12267, PRK12267, methionyl-tRNA synthetase; Rev	0.003
TIGR00396		842	TIGR00396, leuS_bact, leucyl-tRNA synthetase, euba	0.004

>gnl\|CDD\|234705 PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

 Score =  661 bits (1708), Expect = 0.0
 Identities = 248/482 (51%), Positives = 315/482 (65%), Gaps = 32/482 (6%)

Query: 3   TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62
            L+IYN+ +R+K+ F P+ PGKV +YVCG T YDY H+GHAR  +VFD+++R+LR   Y 
Sbjct: 2   MLKIYNTLTRQKEEFKPLEPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYLGYK 61

Query: 63  VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122
           VTYVRNITDIDDKII  A +  ESIK LT R+I A  ED   L++ PPD +P AT +IP+
Sbjct: 62  VTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDMDALNVLPPDIEPRATEHIPE 121

Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR----LISSNFNKINEKNN 178
           I+++IE+LI  G AY+      +GDV + VR F +YGKLSGR    L +    ++ E+  
Sbjct: 122 IIELIERLIDKGHAYE-----ADGDVYFDVRKFPDYGKLSGRNLDELQAGARVEVAEE-- 174

Query: 179 FKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDL 238
            K+DPLDFALWK +K  +P    W S WG GRPGWHIECSAMS   LG  FDIHGGG DL
Sbjct: 175 -KRDPLDFALWKAAKPGEPS---WESPWGKGRPGWHIECSAMSTKYLGETFDIHGGGADL 230

Query: 239 KFPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIR 298
            FPHHENEIAQSE A    F NYWMH+GFV +N +KMSKS GNF TIRDLLKKY+PEV+R
Sbjct: 231 IFPHHENEIAQSEAATGKPFANYWMHNGFVTVNGEKMSKSLGNFFTIRDLLKKYDPEVLR 290

Query: 299 FFILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDI-PKINYKKIIDLNEPHAKRFIIAM 357
           FF+L +HYRS +N+SE  L  AKK+L RLY A+ +     + + ++   E   +RFI AM
Sbjct: 291 FFLLSAHYRSPLNFSEEALEQAKKALERLYNALAETALGEDDEALLAELEEFKERFIEAM 350

Query: 358 NDDFNTPVAISILFDLANIINKNKSIK-------MAKQLRGLGNWLGLLEYSSDEFLKNN 410
           +DDFNTP A+++LF+LA  IN+    K       +A  LR L + LGL +     F    
Sbjct: 351 DDDFNTPEALAVLFELAREINRALETKDKEAAAALAALLRALADVLGLEQDEEALF---- 406

Query: 411 IYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWR 470
                       + +I+  I  R EARK K+F  AD IR EL   GI+LED P+G T WR
Sbjct: 407 ----EAAADELLDAEIEALIEERQEARKAKDFALADAIRDELAALGIVLEDTPDGTT-WR 461

Query: 471 RI 472
           R 
Sbjct: 462 RK 463

Length = 463

>gnl\|CDD\|223293 COG0215, CysS, Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|232974 TIGR00435, cysS, cysteinyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173001 PRK14535, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|178532 PLN02946, PLN02946, cysteine-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|216482 pfam01406, tRNA-synt_1e, tRNA synthetases class I (C) catalytic domain	Back alignment and domain information

>gnl\|CDD\|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|184731 PRK14536, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|132488 TIGR03447, mycothiol_MshC, cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>gnl\|CDD\|183518 PRK12418, PRK12418, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173000 PRK14534, cysS, cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>gnl\|CDD\|153417 cd07963, Anticodon_Ia_Cys, Anticodon-binding domain of cysteinyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|173899 cd00672, CysRS_core, catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|204161 pfam09190, DALR_2, DALR domain	Back alignment and domain information

>gnl\|CDD\|214848 smart00840, DALR_2, This DALR domain is found in cysteinyl-tRNA-synthetases	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|173901 cd00802, class_I_aaRS_core, catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|237049 PRK12300, leuS, leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|185674 cd00668, Ile_Leu_Val_MetRS_core, catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|232955 TIGR00395, leuS_arch, leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>gnl\|CDD\|223221 COG0143, MetG, Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|223569 COG0495, LeuS, Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|173907 cd00814, MetRS_core, catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|173906 cd00812, LeuRS_core, catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>gnl\|CDD\|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|173900 cd00674, LysRS_core_class_I, catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|220185 pfam09334, tRNA-synt_1g, tRNA synthetases class I (M)	Back alignment and domain information

>gnl\|CDD\|224302 COG1384, LysS, Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|216786 pfam01921, tRNA-synt_1f, tRNA synthetases class I (K)	Back alignment and domain information

>gnl\|CDD\|237029 PRK12268, PRK12268, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>gnl\|CDD\|232957 TIGR00398, metG, methionyl-tRNA synthetase	Back alignment and domain information

>gnl\|CDD\|234829 PRK00750, lysK, lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|223138 COG0060, IleS, Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>gnl\|CDD\|237012 PRK11893, PRK11893, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|215518 PLN02959, PLN02959, aminoacyl-tRNA ligase	Back alignment and domain information

>gnl\|CDD\|153409 cd07955, Anticodon_Ia_Cys_like, Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC	Back alignment and domain information

>gnl\|CDD\|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|232956 TIGR00396, leuS_bact, leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		472
COG0215		464	CysS Cysteinyl-tRNA synthetase [Translation, ribos	100.0
PRK14535		699	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PLN02946		557	cysteine-tRNA ligase	100.0
PRK14536		490	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK14534		481	cysS cysteinyl-tRNA synthetase; Provisional	100.0
PRK00260		463	cysS cysteinyl-tRNA synthetase; Validated	100.0
TIGR00435		465	cysS cysteinyl-tRNA synthetase. This model finds t	100.0
PTZ00399		651	cysteinyl-tRNA-synthetase; Provisional	100.0
KOG2007\|consensus		586		100.0
TIGR03447		411	mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-	100.0
PRK12418		384	cysteinyl-tRNA synthetase; Provisional	100.0
PF01406		300	tRNA-synt_1e: tRNA synthetases class I (C) catalyt	100.0
cd00672		213	CysRS_core catalytic core domain of cysteinyl tRNA	100.0
PRK11893		511	methionyl-tRNA synthetase; Reviewed	100.0
COG0143		558	MetG Methionyl-tRNA synthetase [Translation, ribos	100.0
PLN02224		616	methionine-tRNA ligase	100.0
cd00668		312	Ile_Leu_Val_MetRS_core catalytic core domain of is	100.0
PRK00133		673	metG methionyl-tRNA synthetase; Reviewed	100.0
TIGR00398		530	metG methionyl-tRNA synthetase. The methionyl-tRNA	100.0
PLN02610		801	probable methionyl-tRNA synthetase	100.0
PRK12267		648	methionyl-tRNA synthetase; Reviewed	100.0
PRK12268		556	methionyl-tRNA synthetase; Reviewed	100.0
PF09334		391	tRNA-synt_1g: tRNA synthetases class I (M); InterP	100.0
cd00814		319	MetRS_core catalytic core domain of methioninyl-tR	100.0
KOG0436\|consensus		578		100.0
cd00812		314	LeuRS_core catalytic core domain of leucyl-tRNA sy	100.0
cd00817		382	ValRS_core catalytic core domain of valyl-tRNA syn	100.0
cd00818		338	IleRS_core catalytic core domain of isoleucyl-tRNA	100.0
PRK13208		800	valS valyl-tRNA synthetase; Reviewed	100.0
PRK01611		507	argS arginyl-tRNA synthetase; Reviewed	100.0
TIGR00395		938	leuS_arch leucyl-tRNA synthetase, archaeal and cyt	100.0
TIGR00422		861	valS valyl-tRNA synthetase. The valyl-tRNA synthet	100.0
COG0525		877	ValS Valyl-tRNA synthetase [Translation, ribosomal	100.0
PRK05729		874	valS valyl-tRNA synthetase; Reviewed	100.0
PLN02943		958	aminoacyl-tRNA ligase	100.0
PRK14900		1052	valS valyl-tRNA synthetase; Provisional	100.0
PRK00390		805	leuS leucyl-tRNA synthetase; Validated	100.0
PRK05743		912	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
PRK06039		975	ileS isoleucyl-tRNA synthetase; Reviewed	100.0
TIGR00396		842	leuS_bact leucyl-tRNA synthetase, eubacterial and	100.0
TIGR00392		861	ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA	100.0
PRK13804		961	ileS isoleucyl-tRNA synthetase; Provisional	100.0
PLN02882		1159	aminoacyl-tRNA ligase	100.0
PLN02843		974	isoleucyl-tRNA synthetase	100.0
PRK12300		897	leuS leucyl-tRNA synthetase; Reviewed	100.0
PTZ00419		995	valyl-tRNA synthetase-like protein; Provisional	100.0
PLN02563		963	aminoacyl-tRNA ligase	100.0
cd00674		353	LysRS_core_class_I catalytic core domain of class	100.0
PLN02381		1066	valyl-tRNA synthetase	100.0
COG0495		814	LeuS Leucyl-tRNA synthetase [Translation, ribosoma	100.0
TIGR00456		566	argS arginyl-tRNA synthetase. This model recognize	100.0
KOG1247\|consensus		567		100.0
PRK00750		510	lysK lysyl-tRNA synthetase; Reviewed	100.0
PTZ00427		1205	isoleucine-tRNA ligase, putative; Provisional	99.98
PRK12451		562	arginyl-tRNA synthetase; Reviewed	99.97
TIGR00467		515	lysS_arch lysyl-tRNA synthetase, archaeal and spir	99.97
cd00671		212	ArgRS_core catalytic core domain of arginyl-tRNA s	99.97
COG0018		577	ArgS Arginyl-tRNA synthetase [Translation, ribosom	99.97
COG0060		933	IleS Isoleucyl-tRNA synthetase [Translation, ribos	99.97
PF00133		601	tRNA-synt_1: tRNA synthetases class I (I, L, M and	99.96
PLN02959		1084	aminoacyl-tRNA ligase	99.96
PRK04156		567	gltX glutamyl-tRNA synthetase; Provisional	99.96
PLN02286		576	arginine-tRNA ligase	99.95
KOG0435\|consensus		876		99.95
KOG0432\|consensus		995		99.95
cd00802		143	class_I_aaRS_core catalytic core domain of class I	99.93
COG1384		521	LysS Lysyl-tRNA synthetase (class I) [Translation,	99.92
PF01921		360	tRNA-synt_1f: tRNA synthetases class I (K); InterP	99.92
KOG0433\|consensus		937		99.9
cd07963		156	Anticodon_Ia_Cys Anticodon-binding domain of cyste	99.88
PF00750		354	tRNA-synt_1d: tRNA synthetases class I (R); InterP	99.88
cd09287		240	GluRS_non_core catalytic core domain of non-discri	99.86
TIGR00464		470	gltX_bact glutamyl-tRNA synthetase, bacterial fami	99.8
PLN03233		523	putative glutamate-tRNA ligase; Provisional	99.79
PRK12558		445	glutamyl-tRNA synthetase; Provisional	99.79
PRK01406		476	gltX glutamyl-tRNA synthetase; Reviewed	99.77
PRK12410		433	glutamylglutaminyl-tRNA synthetase; Provisional	99.77
PRK14895		513	gltX glutamyl-tRNA synthetase; Provisional	99.76
KOG0434\|consensus		1070		99.76
TIGR00463		560	gltX_arch glutamyl-tRNA synthetase, archaeal and e	99.74
PTZ00402		601	glutamyl-tRNA synthetase; Provisional	99.74
PRK05347		554	glutaminyl-tRNA synthetase; Provisional	99.73
PRK05710		299	glutamyl-Q tRNA(Asp) synthetase; Reviewed	99.72
cd00418		230	GlxRS_core catalytic core domain of glutamyl-tRNA	99.72
PLN02627		535	glutamyl-tRNA synthetase	99.72
PRK14703		771	glutaminyl-tRNA synthetase/YqeY domain fusion prot	99.71
cd00807		238	GlnRS_core catalytic core domain of glutaminyl-tRN	99.71
TIGR03838		272	queuosine_YadB glutamyl-queuosine tRNA(Asp) synthe	99.71
COG0008		472	GlnS Glutamyl- and glutaminyl-tRNA synthetases [Tr	99.7
PLN02907		722	glutamate-tRNA ligase	99.69
PF00749		314	tRNA-synt_1c: tRNA synthetases class I (E and Q),	99.66
cd00808		239	GluRS_core catalytic core domain of discriminating	99.66
TIGR00440		522	glnS glutaminyl-tRNA synthetase. This protein is a	99.66
PTZ00437		574	glutaminyl-tRNA synthetase; Provisional	99.65
PLN02859		788	glutamine-tRNA ligase	99.63
KOG1149\|consensus		524		99.54
KOG4426\|consensus		656		99.54
KOG0437\|consensus		1080		99.44
KOG1195\|consensus		567		99.41
PF09190		63	DALR_2: DALR domain; InterPro: IPR015273 The amino	98.82
KOG1147\|consensus		712		98.53
cd07955		81	Anticodon_Ia_Cys_like Anticodon-binding domain of	98.34
smart00840		56	DALR_2 This DALR domain is found in cysteinyl-tRNA	98.2
cd00395		273	Tyr_Trp_RS_core catalytic core domain of tyrosinyl	98.12
PRK13354		410	tyrosyl-tRNA synthetase; Provisional	98.11
TIGR00233		328	trpS tryptophanyl-tRNA synthetase. This model repr	98.09
PRK12285		368	tryptophanyl-tRNA synthetase; Reviewed	98.06
cd00806		280	TrpRS_core catalytic core domain of tryptophanyl-t	97.93
PRK05912		408	tyrosyl-tRNA synthetase; Validated	97.9
PRK08560		329	tyrosyl-tRNA synthetase; Validated	97.9
COG0180		314	TrpS Tryptophanyl-tRNA synthetase [Translation, ri	97.9
PRK12282		333	tryptophanyl-tRNA synthetase II; Reviewed	97.88
PRK12284		431	tryptophanyl-tRNA synthetase; Reviewed	97.83
PTZ00126		383	tyrosyl-tRNA synthetase; Provisional	97.78
cd07956		156	Anticodon_Ia_Arg Anticodon-binding domain of argin	97.75
PLN02486		383	aminoacyl-tRNA ligase	97.68
cd00805		269	TyrRS_core catalytic core domain of tyrosinyl-tRNA	97.67
PF00579		292	tRNA-synt_1b: tRNA synthetases class I (W and Y);	97.56
KOG1148\|consensus		764		97.45
COG0162		401	TyrS Tyrosyl-tRNA synthetase [Translation, ribosom	97.38
PTZ00348		682	tyrosyl-tRNA synthetase; Provisional	97.35
PRK12283		398	tryptophanyl-tRNA synthetase; Reviewed	97.34
PLN02886		389	aminoacyl-tRNA ligase	97.31
TIGR00234		377	tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA sy	96.94
PRK12556		332	tryptophanyl-tRNA synthetase; Provisional	96.67
cd07958		117	Anticodon_Ia_Leu_BEm Anticodon-binding domain of b	96.47
cd07959		117	Anticodon_Ia_Leu_AEc Anticodon-binding domain of a	95.2
PRK00927		333	tryptophanyl-tRNA synthetase; Reviewed	95.16
cd07962		135	Anticodon_Ia_Val Anticodon-binding domain of valyl	93.46
PF05746		119	DALR_1: DALR anticodon binding domain; InterPro: I	93.29
KOG2007\|consensus		586		92.47
cd07957		129	Anticodon_Ia_Met Anticodon-binding domain of methi	91.38
cd07375		117	Anticodon_Ia_like Anticodon-binding domain of clas	90.71
cd07961		183	Anticodon_Ia_Ile_ABEc Anticodon-binding domain of	85.51
COG1656		165	Uncharacterized conserved protein [Function unknow	85.38
cd07960		180	Anticodon_Ia_Ile_BEm Anticodon-binding domain of b	84.71

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

Probab=100.00  E-value=1.5e-135  Score=1024.02  Aligned_cols=453  Identities=51%  Similarity=0.853  Sum_probs=412.3

Q ss_pred             ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH
Q psy14486          3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK   82 (472)
Q Consensus         3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~   82 (472)
                      +|+||||+||+|++|.|.++++|+||+||||||+.+||||||++|++|+++|+|+.+||.|.||+||||+||||+++|.+
T Consensus         1 ~l~iyNTltr~ke~F~P~~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~   80 (464)
T COG0215           1 MLKLYNTLTRQKEEFVPIDPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRARE   80 (464)
T ss_pred             CcEEEecCccceecccCCCCCeEEEEecCCccCCccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCccc
Q psy14486         83 NNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLS  162 (472)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~  162 (472)
                      +|.++.+++++|+++|.+||++|||.+++.+||+|+|+++|+++|++|+++|+||+..    +|+|||++++|++||+||
T Consensus        81 ~g~~~~ev~~~~i~~f~~D~~aL~v~~p~~~PraTe~I~~iI~~I~~LiekG~AY~~~----~G~VYFdv~~f~~YG~LS  156 (464)
T COG0215          81 EGLSIREVAERYIAAFFEDMDALNVLPPDIEPRATEHIDEIIEFIEKLIEKGYAYVAD----DGDVYFDVSKFKDYGKLS  156 (464)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHhCCCCCcccCcHhhCHHHHHHHHHHHHHCCceEEec----CCcEEEecccchhhHhhc
Confidence            9999999999999999999999999988899999999999999999999999999986    689999999999999999


Q ss_pred             CC-CccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcC
Q psy14486        163 GR-LISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKF  240 (472)
Q Consensus       163 ~~-~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~f  240 (472)
                      ++ .+++++.| +++.+..|+||.||+|||.+++|+|.   |+||||.||||||||||||+.++||.++|||+||.||+|
T Consensus       157 ~~~~le~l~~gar~~~~~~Krnp~DFvLWK~sk~gEp~---W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiF  233 (464)
T COG0215         157 GRDSLEELQAGARVEVDEEKRNPLDFVLWKAAKPGEPS---WDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIF  233 (464)
T ss_pred             CCCChhHHhhccccccccccCCchhheeeccCCCCCCC---CCCCCCCCCCchhHHHHHHHHHHhCCCcceecCcccccC
Confidence            77 78999999 99998999999999999999999999   999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhhccC-CCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHH
Q psy14486        241 PHHENEIAQSEGAYK-HKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNY  319 (472)
Q Consensus       241 pH~~~~~a~~~a~~g-~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~  319 (472)
                      ||||||+||++|++| ++|++||||+|||+++|+|||||+|||||++|++++|+|++|||+||++|||+|++||++.|++
T Consensus       234 PHHENEiAQsea~~g~~~~a~yWmH~G~l~i~geKMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~  313 (464)
T COG0215         234 PHHENEIAQSEAATGVKPFAKYWMHNGFLNIDGEKMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEE  313 (464)
T ss_pred             CCcccHHHHHHhhhCCCcceeEeEEcceeeecCcCcccccCCeeEHHHHHhhcCHHHHHHHHHHHHhCCccccCHHHHHH
Confidence            999999999999999 8999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q psy14486        320 AKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS------IKMAKQLRGLG  393 (472)
Q Consensus       320 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~------~~~~~~l~~~~  393 (472)
                      +.+.++|+++++.++.............++..+|.+||+||||||.|++.|+++++.+|+..+      ..++..+..+.
T Consensus       314 A~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~f~~al~DDfnt~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (464)
T COG0215         314 AKKALERLYNALRRLRDLAGDAELADLKEFEARFREALDDDFNTPKALAVLFELAKEINRLLEEGKSDAKAVLSALKALL  393 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHH
Confidence            999999999999976432111100012566778999999999999999999999999987654      33455666666


Q ss_pred             hhhcc--cccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEE
Q psy14486        394 NWLGL--LEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR  471 (472)
Q Consensus       394 ~ilGi--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~  471 (472)
                      .+||+  +...+... .. .       .+...++|++||++|.+||++|||++||+|||+|.++||.|+|||+| |+|++
T Consensus       394 ~~lg~~~l~~~~~~~-~~-~-------~~~~~~~i~~Li~~R~~aR~~K~~~~AD~iRd~L~~~Gi~leD~~~g-t~w~~  463 (464)
T COG0215         394 AILGLKVLGLFPQSG-AQ-E-------DESDDEEIEALIEERLEARKAKNWALADEIRDELLALGIILEDTPDG-TTWRR  463 (464)
T ss_pred             HHhCchhhccccccc-cc-c-------ccchHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHCCcEEEECCCC-eEEEe
Confidence            77774  22211100 00 0       11145789999999999999999999999999999999999999999 99997


Q ss_pred             C
Q psy14486        472 I  472 (472)
Q Consensus       472 ~  472 (472)
                      .
T Consensus       464 ~  464 (464)
T COG0215         464 K  464 (464)
T ss_pred             C
Confidence            4

>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02946 cysteine-tRNA ligase	Back alignment and domain information

>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK00260 cysS cysteinyl-tRNA synthetase; Validated	Back alignment and domain information

>TIGR00435 cysS cysteinyl-tRNA synthetase	Back alignment and domain information

>PTZ00399 cysteinyl-tRNA-synthetase; Provisional	Back alignment and domain information

>KOG2007\|consensus	Back alignment and domain information

>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase	Back alignment and domain information

>PRK12418 cysteinyl-tRNA synthetase; Provisional	Back alignment and domain information

>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase	Back alignment and domain information

>PRK11893 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02224 methionine-tRNA ligase	Back alignment and domain information

>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases	Back alignment and domain information

>PRK00133 metG methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00398 metG methionyl-tRNA synthetase	Back alignment and domain information

>PLN02610 probable methionyl-tRNA synthetase	Back alignment and domain information

>PRK12267 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12268 methionyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases	Back alignment and domain information

>KOG0436\|consensus	Back alignment and domain information

>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases	Back alignment and domain information

>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases	Back alignment and domain information

>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases	Back alignment and domain information

>PRK13208 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK01611 argS arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family	Back alignment and domain information

>TIGR00422 valS valyl-tRNA synthetase	Back alignment and domain information

>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK05729 valS valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02943 aminoacyl-tRNA ligase	Back alignment and domain information

>PRK14900 valS valyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK00390 leuS leucyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family	Back alignment and domain information

>TIGR00392 ileS isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02882 aminoacyl-tRNA ligase	Back alignment and domain information

>PLN02843 isoleucyl-tRNA synthetase	Back alignment and domain information

>PRK12300 leuS leucyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00419 valyl-tRNA synthetase-like protein; Provisional	Back alignment and domain information

>PLN02563 aminoacyl-tRNA ligase	Back alignment and domain information

>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase	Back alignment and domain information

>PLN02381 valyl-tRNA synthetase	Back alignment and domain information

>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>TIGR00456 argS arginyl-tRNA synthetase	Back alignment and domain information

>KOG1247\|consensus	Back alignment and domain information

>PRK00750 lysK lysyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00427 isoleucine-tRNA ligase, putative; Provisional	Back alignment and domain information

>PRK12451 arginyl-tRNA synthetase; Reviewed	Back alignment and domain information

>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete	Back alignment and domain information

>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases	Back alignment and domain information

>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>PLN02959 aminoacyl-tRNA ligase	Back alignment and domain information

>PRK04156 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02286 arginine-tRNA ligase	Back alignment and domain information

>KOG0435\|consensus	Back alignment and domain information

>KOG0432\|consensus	Back alignment and domain information

>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase	Back alignment and domain information

>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG0433\|consensus	Back alignment and domain information

>cd07963 Anticodon_Ia_Cys Anticodon-binding domain of cysteinyl tRNA synthetases	Back alignment and domain information

>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family	Back alignment and domain information

>PLN03233 putative glutamate-tRNA ligase; Provisional	Back alignment and domain information

>PRK12558 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK14895 gltX glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>KOG0434\|consensus	Back alignment and domain information

>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family	Back alignment and domain information

>PTZ00402 glutamyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK05347 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed	Back alignment and domain information

>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase	Back alignment and domain information

>PLN02627 glutamyl-tRNA synthetase	Back alignment and domain information

>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional	Back alignment and domain information

>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase	Back alignment and domain information

>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase	Back alignment and domain information

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PLN02907 glutamate-tRNA ligase	Back alignment and domain information

>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase	Back alignment and domain information

>TIGR00440 glnS glutaminyl-tRNA synthetase	Back alignment and domain information

>PTZ00437 glutaminyl-tRNA synthetase; Provisional	Back alignment and domain information

>PLN02859 glutamine-tRNA ligase	Back alignment and domain information

>KOG1149\|consensus	Back alignment and domain information

>KOG4426\|consensus	Back alignment and domain information

>KOG0437\|consensus	Back alignment and domain information

>KOG1195\|consensus	Back alignment and domain information

>PF09190 DALR_2: DALR domain; InterPro: IPR015273 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG1147\|consensus	Back alignment and domain information

>cd07955 Anticodon_Ia_Cys_like Anticodon-binding domain of cysteinyl tRNA synthetases and domain found in MshC	Back alignment and domain information

>smart00840 DALR_2 This DALR domain is found in cysteinyl-tRNA-synthetases	Back alignment and domain information

>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK13354 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>TIGR00233 trpS tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK12285 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase	Back alignment and domain information

>PRK05912 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>PRK08560 tyrosyl-tRNA synthetase; Validated	Back alignment and domain information

>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed	Back alignment and domain information

>PRK12284 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PTZ00126 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases	Back alignment and domain information

>PLN02486 aminoacyl-tRNA ligase	Back alignment and domain information

>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase	Back alignment and domain information

>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG1148\|consensus	Back alignment and domain information

>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>PTZ00348 tyrosyl-tRNA synthetase; Provisional	Back alignment and domain information

>PRK12283 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>PLN02886 aminoacyl-tRNA ligase	Back alignment and domain information

>TIGR00234 tyrS tyrosyl-tRNA synthetase	Back alignment and domain information

>PRK12556 tryptophanyl-tRNA synthetase; Provisional	Back alignment and domain information

>cd07958 Anticodon_Ia_Leu_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial leucyl tRNA synthetases	Back alignment and domain information

>cd07959 Anticodon_Ia_Leu_AEc Anticodon-binding domain of archaeal and eukaryotic cytoplasmic leucyl tRNA synthetases	Back alignment and domain information

>PRK00927 tryptophanyl-tRNA synthetase; Reviewed	Back alignment and domain information

>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases	Back alignment and domain information

>PF05746 DALR_1: DALR anticodon binding domain; InterPro: IPR008909 The aminoacyl-tRNA synthetases (6	Back alignment and domain information

>KOG2007\|consensus	Back alignment and domain information

>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases	Back alignment and domain information

>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains	Back alignment and domain information

>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases	Back alignment and domain information

>COG1656 Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		472
3tqo_A		462	Structure Of The Cysteinyl-Trna Synthetase (Cyss) F		1e-120
1li5_A		461	Crystal Structure Of Cysteinyl-Trna Synthetase Leng		1e-114
3c8z_A		414	The 1.6 A Crystal Structure Of Mshc: The Rate Limit		2e-54
3sp1_A		501	Crystal Structure Of Cysteinyl-Trna Synthetase (Cys		5e-44

>pdb|3TQO|A Chain A, Structure Of The Cysteinyl-Trna Synthetase (Cyss) From Coxiella Burnetii Length = 462

Back alignment and structure

Iteration: 1

Score = 428 bits (1101), Expect = e-120, Method: Compositional matrix adjust. Identities = 223/477 (46%), Positives = 303/477 (63%), Gaps = 27/477 (5%) Query: 3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYD 62 +++I+NS +++K+IF PI GKV LYVCG T YDY H+GH R I+FD V R+LR Y+ Sbjct: 4 SVKIFNSLTKQKEIFKPIESGKVKLYVCGXTVYDYXHIGHGRSWIIFDXVVRYLRXRGYE 63 Query: 63 VTYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQ 122 VT+VRNITDIDDKII A +N ES L RFI+ ED L + PD +P AT Y+P+ Sbjct: 64 VTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPE 123 Query: 123 ILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR-LXXXXXXXXXXXXXXXX 181 I+K+I+KL+ N AY NG DV + VR F +YGKLS R L Sbjct: 124 IIKLIQKLLDNQYAYTGQNG----DVFFDVRRFKDYGKLSHRHLDELQAGARVEVSDSKR 179 Query: 182 DPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP 241 DPLDF LWK +K P E +W+S WG GRPGWHIECSA S +LG FDIHGGG DLKFP Sbjct: 180 DPLDFVLWKKAK---PGEPKWDSPWGEGRPGWHIECSAXSSSILGQPFDIHGGGLDLKFP 236 Query: 242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFI 301 HHENEIAQSE + FV W H+G ++IN +K SKS GN +IR+ LK+ + EV+R+F+ Sbjct: 237 HHENEIAQSEAGEEKPFVKLWXHAGLLEINKEKXSKSLGNIISIREALKESDVEVLRYFL 296 Query: 302 LRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDF 361 L HYR+ ++YS+ L + +L R YLA++ +P +N++K + RF A +DDF Sbjct: 297 LSGHYRNPLSYSKENLENGRLALERFYLALRGLPVVNHEK----TSSYTDRFYEAXDDDF 352 Query: 362 NTPVAISILFDLANIINK-------NKSIKMAKQLRGLGNWLGLLEYSSDEFLKNNIYTE 414 NTP+A ++LF+ IN+ K+ +A +L+ LGN GLL+YS ++FL+ Sbjct: 353 NTPIAFALLFEXVREINRFRDNNQIEKAAVLAAELKCLGNIFGLLQYSPEQFLQGA---- 408 Query: 415 RKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471 KK + E IK I R+EAR +K++ AD+IR +L + G+ +ED +G T WR+ Sbjct: 409 -KKEADVQE--IKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG-TSWRQ 461

PyMOL of 3tqo

>pdb|1LI5|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase Length = 461

Back alignment and structure

>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting Enzyme In The Mycothiol Biosynthetic Pathway Length = 414

Back alignment and structure

>pdb|3SP1|A Chain A, Crystal Structure Of Cysteinyl-Trna Synthetase (Cyss) From Borrelia Burgdorferi Length = 501

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		472
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	0.0
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	0.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	0.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	0.0
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-13
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	6e-09
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	3e-08
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	6e-06
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	2e-05
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	3e-05
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	9e-05
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	1e-04
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	2e-04
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	4e-04

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461	Back alignment and structure

 Score =  690 bits (1784), Expect = 0.0
 Identities = 222/478 (46%), Positives = 295/478 (61%), Gaps = 29/478 (6%)

Query: 4   LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
           L+I+N+ +R+K+ F PI  G+V +YVCGIT YD CH+GH R  + FD+V R+LR   Y +
Sbjct: 2   LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61

Query: 64  TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
            YVRNITDIDDKII  A +N ES   +  R I    +D   L+I  PD +P AT++I +I
Sbjct: 62  KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121

Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGR----LISSNFNKINEKNNF 179
           +++ E+LI  G AY  +NG    DV + V     YG LS +    L +     + +    
Sbjct: 122 IELTEQLIAKGHAYVADNG----DVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDD--- 174

Query: 180 KKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK 239
           K++P+DF LWK+SK     E  W S WGAGRPGWHIECSAM+C  LG+HFDIHGGG DL 
Sbjct: 175 KRNPMDFVLWKMSK---EGEPSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLM 231

Query: 240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRF 299
           FPHHENEIAQS  A+  ++VNYWMHSG V ++ +KMSKS GNF T+RD+LK Y+ E +R+
Sbjct: 232 FPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRY 291

Query: 300 FILRSHYRSTINYSEIYLNYAKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMND 359
           F++  HYRS +NYSE  L  A+ +L RLY A++     +        E    RFI AM+D
Sbjct: 292 FLMSGHYRSQLNYSEENLKQARAALERLYTALRG---TDKTVAPAGGEAFEARFIEAMDD 348

Query: 360 DFNTPVAISILFDLANIINKNKS------IKMAKQLRGLGNWLGLLEYSSDEFLKNNIYT 413
           DFNTP A S+LFD+A  +N+ K+        MA  LR L   LGLLE   + FL++    
Sbjct: 349 DFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSG--- 405

Query: 414 ERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRR 471
              +  +    +I+  I  R +ARK K++  AD  R  L   GI+LED P G T WRR
Sbjct: 406 --AQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG-TTWRR 460

PyMOL of 1li5

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii} Length = 462	Back alignment and structure

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi} Length = 501	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii} Length = 967	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} Length = 536	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		472
3tqo_A		462	Cysteinyl-tRNA synthetase; protein synthesis, liga	100.0
3sp1_A		501	Cysteinyl-tRNA synthetase; structural genomics, se	100.0
1li5_A		461	Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys	100.0
3c8z_A		414	Cysteinyl-tRNA synthetase; cysteine ligase, rossma	100.0
2csx_A		497	Methionyl-tRNA synthetase; ligase, riken structura	100.0
2d5b_A		500	Methionyl-tRNA synthetase; rossmann fold, class 1A	100.0
1rqg_A		722	Methionyl-tRNA synthetase; translation, dimerizati	100.0
2x1l_A		524	Methionyl-tRNA synthetase; nucleotide-binding, pro	100.0
3u1f_A		542	Methionyl-tRNA synthetase; aminoacyl-tRNA syntheta	100.0
4dlp_A		536	Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA	100.0
3kfl_A		564	Methionyl-tRNA synthetase; parasite, aminoacyl-tRN	100.0
3h99_A		560	Methionyl-tRNA synthetase; rossmann fold, aminoacy	100.0
1iq0_A		592	Arginyl-tRNA synthetase; riken structural genomics	100.0
1irx_A		523	Lysyl-tRNA synthetase; beta sandwitch, zinc-bindin	100.0
2zue_A		629	Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase	100.0
1gax_A		862	Valrs, valyl-tRNA synthetase; protein-RNA complex,	100.0
1wkb_A		810	Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, e	100.0
1ffy_A		917	Isoleucyl-tRNA synthetase; protein-RNA complex, me	100.0
1ile_A		821	Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA s	100.0
1wz2_A		967	Leucyl-tRNA synthetase; ligase, riken structural g	100.0
4arc_A		880	Leucine--tRNA ligase; ligase-RNA complex, nucleoti	100.0
1f7u_A		607	Arginyl-tRNA synthetase; RNA-protein complex, amin	100.0
2v0c_A		878	Aminoacyl-tRNA synthetase; ligase, nucleotide-bind	100.0
3fnr_A		464	Arginyl-tRNA synthetase; transferase, PSI-2, NYSGX	100.0
3aii_A		553	Glutamyl-tRNA synthetase; amino-acyl tRNA syntheta	100.0
1qtq_A		553	GLNRS, protein (glutaminyl-tRNA synthetase); gluta	100.0
2hz7_A		851	Glutaminyl-tRNA synthetase; rossmann fold, GLNRS c	100.0
2cfo_A		492	Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA s	99.96
1nzj_A		298	Hypothetical protein YADB; Zn cluster, glutamyl T-	99.95
2o5r_A		481	Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, g	99.86
1j09_A		468	Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, r	99.85
3afh_A		488	Glutamyl-tRNA synthetase 2; protein-substrate comp	99.83
4g6z_A		490	Glutamate-tRNA ligase; aminoacyl-tRNA synthetase,	99.82
3al0_C		592	Glutamyl-tRNA(Gln) amidotransferase subunit C, GL	99.82
2ja2_A		498	Glutamyl-tRNA synthetase; non-discriminating gluta	99.76
4gri_A		512	Glutamate--tRNA ligase; structural genomics, seatt	99.74
2cyb_A		323	Tyrosyl-tRNA synthetase; rossmann-fold, structural	98.8
2g36_A		340	Tryptophanyl-tRNA synthetase; TM0492, structural g	98.45
2el7_A		337	Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synth	98.4
2dlc_X		394	Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligas	98.2
1n3l_A		372	Tyrosyl-tRNA synthetase; rossmann fold AS catalyti	98.14
1i6k_A		328	TRPRS, tryptophanyl-tRNA synthetase; class I tRNA	98.12
3hzr_A		386	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, str	98.02
2cya_A		364	Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, st	98.01
2zp1_A		314	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	97.93
3vgj_A		373	Tyrosyl-tRNA synthetase, putative; tyrrs, ligase;	97.83
3prh_A		388	Tryptophanyl-tRNA synthetase; TRPRS, protein biosy	97.65
2j5b_A		348	Tyrosyl-tRNA synthetase; ligase, protein biosynthe	97.61
2cyc_A		375	Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacy	97.59
3jxe_A		392	Tryptophanyl-tRNA synthetase; adenosine triphospha	97.54
3i05_A		395	Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP	97.49
3hv0_A		393	Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-bin	97.47
2ip1_A		432	Tryptophanyl-tRNA synthetase; rossmann fold, struc	97.39
3a04_A		372	Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tR	97.34
3tze_A		406	Tryptophanyl-tRNA synthetase; structural genomics,	97.26
1r6t_A		477	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	97.25
3p0j_A		690	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	97.15
3tzl_A		322	Tryptophanyl-tRNA synthetase; structural genomics,	96.96
1yi8_B		351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	96.91
2yxn_A		322	Tyrosyl-tRNA synthetase; tRNA synthetases class I,	96.73
2pid_A		356	Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase	96.59
1y42_X		392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	96.55
2jan_A		432	Tyrosyl-tRNA synthetase; protein biosynthesis, ami	96.49
1h3f_A		432	Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA sy	96.46
2ts1_A		419	Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30	96.45
1jil_A		420	Tyrrs, tyrosyl-tRNA synthetase; truncation, based	96.44
2yy5_A		348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	95.27
1r6u_A		437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	93.6
3sz3_A		341	Tryptophanyl-tRNA synthetase; structural genomics,	92.99
3foc_A		451	Tryptophanyl-tRNA synthetase; structural genomics,	91.28
3n9i_A		346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	90.34
3foc_A		451	Tryptophanyl-tRNA synthetase; structural genomics,	87.36
3n9i_A		346	Tryptophanyl-tRNA synthetase; tryptophan-tRNA liga	86.17
3tzl_A		322	Tryptophanyl-tRNA synthetase; structural genomics,	85.55
1y42_X		392	Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tR	85.07
1yi8_B		351	Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.	83.57
2yy5_A		348	Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synt	83.23
1r6u_A		437	Tryptophanyl-tRNA synthetase; class IC tRNA synthe	81.66

>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}	Back alignment and structure

Probab=100.00  E-value=4.6e-123  Score=959.00  Aligned_cols=452  Identities=50%  Similarity=0.885  Sum_probs=361.0

Q ss_pred             CcceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHH
Q psy14486          1 MSTLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACA   80 (472)
Q Consensus         1 ~~~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a   80 (472)
                      |+ |+||||+||+||+|.|.++++|+||+|||||||++||||+|++|++|+++|+||++||+|.||+|+||+|+||+.+|
T Consensus         3 m~-l~~yntlt~~ke~f~p~~~~~v~~YvcGPtvy~~~HIGHaR~~v~~Dvl~R~lr~~Gy~V~~v~n~dD~ddKIi~~A   81 (462)
T 3tqo_A            3 MS-VKIFNSLTKQKEIFKPIESGKVKLYVCGMTVYDYMHIGHGRSWIIFDMVVRYLRMRGYEVTFVRNITDIDDKIIKRA   81 (462)
T ss_dssp             CC-CEEEETTTTEEEECCCSSTTEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEECBBCCCHHHHHHH
T ss_pred             ce-EEEEEcCCCceeccccCCCCeEEEEeCCCcCCCCCchhhhHHHHHHHHHHHHHHHcCCceEEecCcCCCCcHHHHHH
Confidence            66 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCc
Q psy14486         81 KKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGK  160 (472)
Q Consensus        81 ~~~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~  160 (472)
                      +++|++|++++++|++.|.++|++|||.+|+++|++|+|++.|+++|++|+++|+||+..    +|+||||+++++.||+
T Consensus        82 ~~~g~~~~e~a~~~~~~f~~d~~~LgI~~d~~~praTe~i~~i~~~i~~L~ekG~aY~~~----~g~Vyfdv~~~~~yg~  157 (462)
T 3tqo_A           82 GENKESPAALAERFIQILHEDEKALRVLSPDQEPRATQYVPEIIKLIQKLLDNQYAYTGQ----NGDVFFDVRRFKDYGK  157 (462)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHTCCCCSBCCBGGGCHHHHHHHHHHHHHHTSEEECT----TSCEEECTTTCTTTTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHHcCCCCCccccChhhHHHHHHHHHHHHHHCCCEEEec----CCcEEecccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999874    4899999999999999


Q ss_pred             ccCCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCc
Q psy14486        161 LSGRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLK  239 (472)
Q Consensus       161 l~~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~  239 (472)
                      ||+++++++..| |++...+|++|.||+|||.+++|+|.   |+||||.||||||||||||+.++||.++|||+||.||+
T Consensus       158 Ls~~~~~~~~~g~r~~~~~~K~~p~DF~LWK~~k~~ep~---W~spwG~GrPGWHiEcsam~~~~lG~~~dih~gG~Dl~  234 (462)
T 3tqo_A          158 LSHRHLDELQAGARVEVSDSKRDPLDFVLWKKAKPGEPK---WDSPWGEGRPGWHIECSAMSSSILGQPFDIHGGGLDLK  234 (462)
T ss_dssp             TTTCSCC------------CCSSTTCEEEEEECCTTSCC---BCCTTCSEEECHHHHHHHHHHHHHCSSEEEEEEEGGGT
T ss_pred             ccCCChHHhhccCccccccccCCccccceeeecCCCCCc---ccCCCCCCCCCCceehHHHHHHhcCCCeEEEccccccc
Confidence            999999999999 98888899999999999999999998   99999999999999999999999999999999999999


Q ss_pred             CchhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHH
Q psy14486        240 FPHHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNY  319 (472)
Q Consensus       240 fpH~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~  319 (472)
                      ||||+|++||++|++|.||+++|+|+|+|+++|+|||||+||+|+++|++++|+||++|||++++||+++++||++.+++
T Consensus       235 FpHheneiaqs~a~~g~p~~~~w~H~g~v~~~G~KMSKSlGN~i~~~dll~~~g~dalR~~lls~~yr~~l~fs~~~l~~  314 (462)
T 3tqo_A          235 FPHHENEIAQSEAGEEKPFVKLWMHAGLLEINKEKMSKSLGNIISIREALKESDVEVLRYFLLSGHYRNPLSYSKENLEN  314 (462)
T ss_dssp             TTHHHHHHHHHHHHHSSCCEEEEEEECCEEETTEECCTTTTCCCBHHHHHHHSCHHHHHHHHHHSCTTSCEEECHHHHHH
T ss_pred             cHHHHhHHHHHHHHcCCCcceEEEEccEEecCCcCccccCCCcccHHHHHhhcChHHhhhhhccCCCCCCcCcCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCccccccccCcchhHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Q psy14486        320 AKKSLIRLYLAIKDIPKINYKKIIDLNEPHAKRFIIAMNDDFNTPVAISILFDLANIINKNKS-------IKMAKQLRGL  392 (472)
Q Consensus       320 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dd~n~~~al~~l~~l~~~~N~~~~-------~~~~~~l~~~  392 (472)
                      +.+.++|++++++.+....+    +....+.++|.+||+||||||.|++.|+++++.+|+..+       ..++..++.+
T Consensus       315 a~~~l~rl~~~~~~~~~~~~----~~~~~~~~~~~~a~~dD~nt~~a~~~l~~~~~~~n~~~~~~~~~~~~~~~~~~~~~  390 (462)
T 3tqo_A          315 GRLALERFYLALRGLPVVNH----EKTSSYTDRFYEAMDDDFNTPIAFALLFEMVREINRFRDNNQIEKAAVLAAELKCL  390 (462)
T ss_dssp             HHHHHHHHHHHHTTCCC----------CHHHHHHHHHHTBTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHH
Confidence            99999999999988753211    112467789999999999999999999999999998764       2345678888


Q ss_pred             HhhhcccccchhHHhhhhhhhhhccccCCChHHHHHHHHHHHHHHhcCChHHhHHHHHHhHhCCcEEEecCCCeeeEEEC
Q psy14486        393 GNWLGLLEYSSDEFLKNNIYTERKKNVNYSENDIKLKIYFRSEARKRKNFLEADKIRQELVNNGIILEDMPNGKTEWRRI  472 (472)
Q Consensus       393 ~~ilGi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Li~~R~~aR~~Kdf~~aD~iRd~L~~~Gi~v~D~~~g~t~w~~~  472 (472)
                      ..+|||+..++..++.. ..      ....+++|++||++|++||++|||++||+|||+|.++||.|+|||+| |+|++.
T Consensus       391 ~~vlg~~~~~~~~~~~~-~~------~~~~~~~i~~li~~R~~ar~~kd~~~aD~iR~~L~~~Gi~l~D~~~g-~~w~~~  462 (462)
T 3tqo_A          391 GNIFGLLQYSPEQFLQG-AK------KEADVQEIKKLIDQRNEARAKKDWKTADQIRDQLTDLGVAIEDSSDG-TSWRQE  462 (462)
T ss_dssp             HGGGTCSCSCHHHHC-----------------------------------------------------------------
T ss_pred             HHhcCCCccchhhhhhc-cc------cccCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHCCcEEEEcCCC-cEEEeC
Confidence            99999987665443321 00      11123679999999999999999999999999999999999999999 999873

PyMOL of 3tqo

>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}	Back alignment and structure

>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B	Back alignment and structure

>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}	Back alignment and structure

>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*	Back alignment and structure

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A	Back alignment and structure

>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1	Back alignment and structure

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*	Back alignment and structure

>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*	Back alignment and structure

>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}	Back alignment and structure

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}	Back alignment and structure

>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A	Back alignment and structure

>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1	Back alignment and structure

>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1	Back alignment and structure

>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A	Back alignment and structure

>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A	Back alignment and structure

>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}	Back alignment and structure

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*	Back alignment and structure

>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*	Back alignment and structure

>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}	Back alignment and structure

>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*	Back alignment and structure

>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*	Back alignment and structure

>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*	Back alignment and structure

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}	Back alignment and structure

>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}	Back alignment and structure

>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A	Back alignment and structure

>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}	Back alignment and structure

>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}	Back alignment and structure

>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*	Back alignment and structure

>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}	Back alignment and structure

>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A	Back alignment and structure

>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*	Back alignment and structure

>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}	Back alignment and structure

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}	Back alignment and structure

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A	Back alignment and structure

>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}	Back alignment and structure

>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}	Back alignment and structure

>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}	Back alignment and structure

>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}	Back alignment and structure

>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}	Back alignment and structure

>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*	Back alignment and structure

>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A	Back alignment and structure

>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}	Back alignment and structure

>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}	Back alignment and structure

>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*	Back alignment and structure

>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}	Back alignment and structure

>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}	Back alignment and structure

>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}	Back alignment and structure

>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}	Back alignment and structure

>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}	Back alignment and structure

>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0	Back alignment and structure

>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0	Back alignment and structure

>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*	Back alignment and structure

>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*	Back alignment and structure

>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}	Back alignment and structure

>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A	Back alignment and structure

>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*	Back alignment and structure

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*	Back alignment and structure

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*	Back alignment and structure

>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*	Back alignment and structure

>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*	Back alignment and structure

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A	Back alignment and structure

>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}	Back alignment and structure

>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*	Back alignment and structure

>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A	Back alignment and structure

>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*	Back alignment and structure

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}	Back alignment and structure

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A	Back alignment and structure

>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}	Back alignment and structure

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}	Back alignment and structure

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1	Back alignment and structure

>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}	Back alignment and structure

>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1	Back alignment and structure

>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*	Back alignment and structure

>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A	Back alignment and structure

>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*	Back alignment and structure

>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}	Back alignment and structure

>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		472
d1li5a2		315	c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysR	1e-83
d1irxa2		317	c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {	1e-39
d1pfva2		350	c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthe	1e-34
d1rqga2		361	c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthe	2e-33
d2d5ba2		348	c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetR	2e-33
d1li5a1		87	a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (Cy	2e-19
d1ffya3		450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	9e-14
d1ffya3		450	c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthe	1e-05
d1ivsa4		425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	3e-11
d1ivsa4		425	c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase	1e-07
d1ilea3		452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	5e-10
d1ilea3		452	c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthe	9e-07
d1j09a2		305	c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS	1e-07
d1f7ua2		348	c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgR	8e-06
d1iq0a2		370	c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS	5e-04
d1h3na3		494	c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetas	0.002

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 315	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

 Score =  258 bits (660), Expect = 1e-83
 Identities = 162/321 (50%), Positives = 216/321 (67%), Gaps = 8/321 (2%)

Query: 4   LRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDV 63
           L+I+N+ +R+K+ F PI  G+V +YVCGIT YD CH+GH R  + FD+V R+LR   Y +
Sbjct: 2   LKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKL 61

Query: 64  TYVRNITDIDDKIIACAKKNNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQI 123
            YVRNITDIDDKII  A +N ES   +  R I    +D   L+I  PD +P AT++I +I
Sbjct: 62  KYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEI 121

Query: 124 LKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLSGRLISSNF-NKINEKNNFKKD 182
           +++ E+LI  G AY  +    NGDV + V     YG LS + +         +  + K++
Sbjct: 122 IELTEQLIAKGHAYVAD----NGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRN 177

Query: 183 PLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFPH 242
           P+DF LWK+SK  +P    W S WGAGRPGWHIECSAM+C  LG+HFDIHGGG DL FPH
Sbjct: 178 PMDFVLWKMSKEGEP---SWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPH 234

Query: 243 HENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFIL 302
           HENEIAQS  A+  ++VNYWMHSG V ++ +KMSKS GNF T+RD+LK Y+ E +R+F++
Sbjct: 235 HENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLM 294

Query: 303 RSHYRSTINYSEIYLNYAKKS 323
             HYRS +NYSE  L  A+ +
Sbjct: 295 SGHYRSQLNYSEENLKQARAA 315

PyMOL of d1li5a2

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 317	Back information, alignment and structure

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]} Length = 350	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]} Length = 361	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]} Length = 348	Back information, alignment and structure

>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]} Length = 87	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]} Length = 450	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]} Length = 425	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]} Length = 452	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]} Length = 305	Back information, alignment and structure

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 348	Back information, alignment and structure

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]} Length = 370	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]} Length = 494	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		472
d1li5a2		315	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	100.0
d1pfva2		350	Methionyl-tRNA synthetase (MetRS) {Escherichia col	100.0
d2d5ba2		348	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	100.0
d1rqga2		361	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	100.0
d1ivsa4		425	Valyl-tRNA synthetase (ValRS) {Thermus thermophilu	100.0
d1ilea3		452	Isoleucyl-tRNA synthetase (IleRS) {Thermus thermop	100.0
d1ffya3		450	Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus	100.0
d1h3na3		494	Leucyl-tRNA synthetase (LeuRS) {Thermus thermophil	100.0
d1irxa2		317	Class I lysyl-tRNA synthetase {Archaeon Pyrococcus	100.0
d1f7ua2		348	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	99.93
d1iq0a2		370	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	99.93
d1j09a2		305	Glutamyl-tRNA synthetase (GluRS) {Thermus thermoph	99.9
d1gtra2		331	Glutaminyl-tRNA synthetase (GlnRS) {Escherichia co	99.72
d1nzja_		286	Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia c	99.71
d1li5a1		87	Cysteinyl-tRNA synthetase (CysRS) {Escherichia col	99.18
d1j1ua_		306	Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanoc	97.96
d1h3fa1		343	Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophi	97.79
d1n3la_		339	Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapie	97.44
d1r6ta2		386	Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo	96.28
d1jila_		323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	96.14
d2d5ba1		152	Methionyl-tRNA synthetase (MetRS) {Thermus thermop	96.07
d1pfva1		162	Methionyl-tRNA synthetase (MetRS) {Escherichia col	96.03
d1rqga1		210	Methionyl-tRNA synthetase (MetRS) {Pyrococcus abys	94.51
d1f7ua1		124	Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Sa	94.23
d1iq0a1		126	Arginyl-tRNA synthetase (ArgRS) {Thermus thermophi	93.38
d2ts1a_		319	Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearoth	92.69
d1i6la_		326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	85.99
d1jila_		323	Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus au	85.42
d1i6la_		326	Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus ste	84.06

>d1li5a2 c.26.1.1 (A:1-315) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Nucleotidylyl transferase
family: Class I aminoacyl-tRNA synthetases (RS), catalytic domain
domain: Cysteinyl-tRNA synthetase (CysRS)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-65  Score=505.52  Aligned_cols=314  Identities=52%  Similarity=0.933  Sum_probs=285.4

Q ss_pred             ceeeeecCCCcccccccCCCCceEEEEcCCCCCCcCCcccchHHHHHHHHHHHHHHCCCceEEecCCCcccHHHHHHHHH
Q psy14486          3 TLRIYNSFSRKKQIFYPITPGKVSLYVCGITAYDYCHLGHARLMIVFDIVQRWLRINNYDVTYVRNITDIDDKIIACAKK   82 (472)
Q Consensus         3 ~l~~~nt~~~~~~~~~p~~~~~v~~y~cgPt~~g~lHiGhar~~v~~D~l~R~l~~~G~~v~~v~~~dD~d~ki~~~a~~   82 (472)
                      ||+||||+||++++|.|.+|++++||||||||||++||||+|++|++|+++|+||..|++|.+++++||+|.||...|++
T Consensus         1 ~~~~~~~~~~~~~~f~~~~~~~~~~yv~Gptv~g~~HIGH~R~av~gD~laR~lr~~G~~V~~~~~~dd~G~~i~~~a~~   80 (315)
T d1li5a2           1 MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANE   80 (315)
T ss_dssp             CCEEEETTTTEEEECCCSSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHHHHHHHH
T ss_pred             CceEEeCCCCceeeeecCCCCeEEEEecCCcCCCCcccchhHHHHHHHHHHHHHHHcCCcEEEEecccchhHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHHHHHHhCCCCCCccccCCCcHHHHHHHHHHHHHCCCccccCCCccCCcEEEecccccCcCccc
Q psy14486         83 NNESIKTLTSRFIKAAQEDSLLLHIQPPDYQPCATNYIPQILKMIEKLIFNGLAYQNNNGKINGDVNYSVRNFLNYGKLS  162 (472)
Q Consensus        83 ~g~~~~~~~~~~~~~~~~~l~~LgI~~d~~~~r~s~~~~~~~~~i~~L~~~G~~y~~~~~~~~g~v~f~~~~~~~yg~l~  162 (472)
                      .|++++++++.+..++.++++.++|..+.++++++++++++++.+++|..+|.+|...    .+.+|++...++.||..+
T Consensus        81 ~~~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~e~~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  156 (315)
T d1li5a2          81 NGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVAD----NGDVMFDVPTDPTYGVLS  156 (315)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHTTCCCCSBCCBGGGCHHHHHHHHHHHHHTTSEEECT----TSCEEECGGGCTTTTTTT
T ss_pred             hhhccccccccchhhhhhhHHhcCCCCCcEEEecchhhhhhhhHHHHhhccCceeccc----cceEEeecccccccCccc
Confidence            9999999999999999999999999999998888999999999999999999999775    577899988889999988


Q ss_pred             CCCccccccC-CCCccccccCccccccccccCCCCCccccccCCCccCCCCCcchhhHhhhhhhCCCceEeeeccCCcCc
Q psy14486        163 GRLISSNFNK-INEKNNFKKDPLDFALWKVSKNNDPYEIRWNSKWGAGRPGWHIECSAMSCYLLGSHFDIHGGGQDLKFP  241 (472)
Q Consensus       163 ~~~~~~~~~g-~v~~~~~k~~~~df~lwk~~~~g~~~~~~w~~~wG~g~PgWhiecsam~~~~~g~~~dih~~G~Dl~fp  241 (472)
                      .....++..+ ++......+++.|+.+||.++.+++.   +.+.||.++|+|+++|.+.+...|+..++++++|.|+.+|
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~~~---~~~~~g~~~~~~~~~~~~~w~~~l~~~~~~~~~~~d~~~~  233 (315)
T d1li5a2         157 RQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPS---WPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFP  233 (315)
T ss_dssp             TC----------------CCSTTCEEEEEECCTTSCC---BCCTTCSEEECSSHHHHHHHHHHHCSSEEEEECBGGGTTT
T ss_pred             cccccccccCCcccccccccChhhhhccccCccCCce---eccCCceecccccchhhhHHHHHcCCcccccccccccccc
Confidence            7777777666 55555566788899999998888887   8999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhhccCCCCceEEEeeeeEEecCccccccCCCccCHHHHHhhCChhhHHHHhhhcCCCCCcccCHHHHHHHH
Q psy14486        242 HHENEIAQSEGAYKHKFVNYWMHSGFVKINNKKMSKSFGNFCTIRDLLKKYNPEVIRFFILRSHYRSTINYSEIYLNYAK  321 (472)
Q Consensus       242 H~~~~~a~~~a~~g~~~~~~~~h~g~l~~~G~KMSKS~Gn~i~~~dll~~~~~d~lR~~ll~~~~~~~~~fs~~~l~~~~  321 (472)
                      |+...+++..+..+..++.+|+|+|||+++|+|||||+||+|+|+|++++|+||++||||++++++++++||++.|.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~KMSKs~Gn~V~~~dlle~~g~D~lRy~lls~~~~s~ldFs~e~l~~a~  313 (315)
T d1li5a2         234 HHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQAR  313 (315)
T ss_dssp             HHHHHHHHHHHHSSSCCEEEECCBCCEEETTBCCCGGGTCCCBHHHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHHHH
T ss_pred             cccccchhhhcccccccccEEEEEEEEecCCcEecCcCCCcccHHHHHHhCCHHHHHHHHHcCCCCCCCCcCHHHHHHHh
Confidence            99999999888877788899999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HH
Q psy14486        322 KS  323 (472)
Q Consensus       322 ~~  323 (472)
                      ++
T Consensus       314 ~~  315 (315)
T d1li5a2         314 AA  315 (315)
T ss_dssp             HH
T ss_pred             hC
Confidence            64

PyMOL of d1li5a2

>d1pfva2 c.26.1.1 (A:4-140,A:176-388) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d5ba2 c.26.1.1 (A:1-348) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1rqga2 c.26.1.1 (A:1-138,A:174-396) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase (IleRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1irxa2 c.26.1.1 (A:3-319) Class I lysyl-tRNA synthetase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1f7ua2 c.26.1.1 (A:136-483) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iq0a2 c.26.1.1 (A:97-466) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1j09a2 c.26.1.1 (A:1-305) Glutamyl-tRNA synthetase (GluRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1gtra2 c.26.1.1 (A:8-338) Glutaminyl-tRNA synthetase (GlnRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1nzja_ c.26.1.1 (A:) Glutamyl-Q tRNA-Asp synthetase YadB {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1li5a1 a.27.1.1 (A:316-402) Cysteinyl-tRNA synthetase (CysRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d2d5ba1 a.27.1.1 (A:349-500) Methionyl-tRNA synthetase (MetRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1pfva1 a.27.1.1 (A:389-550) Methionyl-tRNA synthetase (MetRS) {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1rqga1 a.27.1.1 (A:397-606) Methionyl-tRNA synthetase (MetRS) {Pyrococcus abyssi [TaxId: 29292]}	Back information, alignment and structure

>d1f7ua1 a.27.1.1 (A:484-607) Arginyl-tRNA synthetase (ArgRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS) {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}	Back information, alignment and structure

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure

>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Staphylococcus aureus [TaxId: 1280]}	Back information, alignment and structure

>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}	Back information, alignment and structure