Psyllid ID: psy15270

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500------
MSGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ
ccccccEEEcccccccEEEEEccccccEEEEccccEEEEEccccccccccccccccccEEEccccccEEEEEccccccEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEcccccccccccccEEEEcEEEEEcEEEEcccccccccEEEEEEccccccccHHHHHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHcccccccEEEccccccccccccEEEEEccccccHHHHHHHHHHHHEEEEEEEEccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEcccccEEcccccccEEEEEEccccccEEEEEEEEccEEEEEEEcccEEEEEcccccEEcccccccEEccEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccccccccccc
cccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEHHccccEEEEEEEccccEEEEEccccccEEEEccccccccccccccccccHHHHccccEEEEHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccHHHcccccEcEEHHHEEEEEEccccccEEEcccccEEcccccHHHHHHHHHHHHcccHHHccccccEEEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEcccccHHccccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccHHHHHHHHHEEEEEEcccccEEEEEEcccEEEEEccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccEEccEEEHHccccEEEEEEEccccEEEEEccccEEEEEcccccccccccccccccccc
msgtsgrhipafknihiVDISVGTEHVLAVSntgqvfawgnnsdaqlglgnqinyrePQLVLALSNKnirqvsagrshsaawtapplpphtpghtpssslrlglpqdipdhyghlqnkpLPLIRARLKLLNRFSDLIYQVVRllplgnvdqdwvqctpyswlvhpslrplfaprvytlplvrsvgktmlvgknfgpsvtvrrlttkskqtVKPIFAQISRQVVKMkgsdlrlpsrAWKVKLLgegaddaggvfdDTITEMCGELLsgavpllvrtpngvadtgynrdryilnpDLSESLQSLMHFKFLGILFGVairtkkplplplsplVWKLIvqepvtftdledndtLYAQSLRAIRDIHlsgvteanfpeiiplecfegaswtgritpivtggqsvplTFANRLQYYEAAIACGFkhsavvtsngylytfgngdygrlghgttmnwkvPERVVALNKVHVESVscglnhtvciadkgkavyafgdgeygklglgntglkptpq
msgtsgrhipafknIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGktmlvgknfgpsvtvrrlttkskqtvkpifaqisrqvvkmkgsdlrlpsRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGeygklglgntglkptpq
MSGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTApplpphtpghtpssslRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKplplplsplVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ
********IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNK******************************************DHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLG*********
**GTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKL*LGN******P*
MSGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNI***********AWTAPPLPP**********LRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ
***TSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKL************
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MSGTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query506 2.2.26 [Sep-21-2011]
Q157514861 Probable E3 ubiquitin-pro yes N/A 0.879 0.091 0.518 1e-129
Q9VR914912 Probable E3 ubiquitin-pro yes N/A 0.654 0.067 0.323 7e-50
Q4U2R1 4836 E3 ubiquitin-protein liga no N/A 0.758 0.079 0.312 5e-48
O95714 4834 E3 ubiquitin-protein liga no N/A 0.758 0.079 0.312 1e-47
Q9R0X5 1001 X-linked retinitis pigmen no N/A 0.160 0.080 0.476 8e-13
Q9UII4 1024 E3 ISG15--protein ligase no N/A 0.179 0.088 0.442 4e-12
Q15034 1050 Probable E3 ubiquitin-pro no N/A 0.164 0.079 0.406 5e-12
Q9N1T2 1003 X-linked retinitis pigmen no N/A 0.177 0.089 0.428 6e-12
Q6P798 551 RCC1 and BTB domain-conta no N/A 0.243 0.223 0.362 9e-12
Q92834 1020 X-linked retinitis pigmen no N/A 0.177 0.088 0.428 1e-11
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function desciption
 Score =  463 bits (1192), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 242/467 (51%), Positives = 312/467 (66%), Gaps = 22/467 (4%)

Query: 7    RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
            + IP    + I D++VG EH LA+++ G V+AWG+NS+ QLGLG+  + REP LV  L  
Sbjct: 4283 QQIPVLAGVIIEDVAVGAEHTLALASNGDVYAWGSNSEGQLGLGHTNHVREPTLVTGLQG 4342

Query: 67   KNIRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRAR 126
            KN+RQ+SAGR HSAAWTAPP+PP  PG   S  L+LGLP  +P  YG L+   +  +RAR
Sbjct: 4343 KNVRQISAGRCHSAAWTAPPVPPRAPG--VSVPLQLGLPDTVPPQYGALREVSIHTVRAR 4400

Query: 127  LKLLNRFSDLIYQVVRLLPLGNVDQDWV-QCTPYSW-LVHPSLRPLFAPRVYTLPLVRSV 184
            L+LL  FSDL+Y   RLL L   +Q+        +W +V   LRPL APRVYTLP+VRS+
Sbjct: 4401 LRLLYHFSDLMYSSWRLLNLSPNNQNSTSHYNAGTWGIVQGQLRPLLAPRVYTLPMVRSI 4460

Query: 185  GKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGE 244
            GKTM+ GKN+GP +TV+R++T+ ++  KPIF QI+RQVVK+  SDLRLPSRAWKVKL+GE
Sbjct: 4461 GKTMVQGKNYGPQITVKRISTRGRK-CKPIFVQIARQVVKLNASDLRLPSRAWKVKLVGE 4519

Query: 245  GADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMH 304
            GADDAGGVFDDTITEMC EL +G V LL+ +PN  A+ GYNRDR++ NP      + LM 
Sbjct: 4520 GADDAGGVFDDTITEMCQELETGIVDLLIPSPNATAEVGYNRDRFLFNPSACLD-EHLMQ 4578

Query: 305  FKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLS 364
            FKFLGIL GVAIRTKKPL L L+PLVWK +   P+T  DLE+ D LY Q+L +I  I  S
Sbjct: 4579 FKFLGILMGVAIRTKKPLDLHLAPLVWKQLCCVPLTLEDLEEVDLLYVQTLNSILHIEDS 4638

Query: 365  GVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVV 424
            G+TE +F E+IPL+ F G S  G++ PI+ GG S+PLTF+NR +Y E AI          
Sbjct: 4639 GITEESFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAIE--------- 4689

Query: 425  TSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVA-LNKVHVESVSCGL 470
                  Y     D         M+W VP  +++ L    +E + CG+
Sbjct: 4690 ------YRLHEMDRQVAAVREGMSWIVPVPLLSLLTAKQLEQMVCGM 4730
Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator OS=Mus musculus GN=Rpgr PE=1 SV=2 Back     alignment and function description
>sp|Q9UII4|HERC5_HUMAN E3 ISG15--protein ligase HERC5 OS=Homo sapiens GN=HERC5 PE=1 SV=2 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q9N1T2|RPGR_CANFA X-linked retinitis pigmentosa GTPase regulator OS=Canis familiaris GN=RPGR PE=2 SV=1 Back     alignment and function description
>sp|Q6P798|RCBT2_RAT RCC1 and BTB domain-containing protein 2 OS=Rattus norvegicus GN=Rcbtb2 PE=2 SV=1 Back     alignment and function description
>sp|Q92834|RPGR_HUMAN X-linked retinitis pigmentosa GTPase regulator OS=Homo sapiens GN=RPGR PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
270002031 4191 hypothetical protein TcasGA2_TC000971 [T 0.792 0.095 0.573 1e-133
149574281 4866 PREDICTED: probable E3 ubiquitin-protein 0.875 0.091 0.520 1e-129
326926479 4334 PREDICTED: probable E3 ubiquitin-protein 0.879 0.102 0.522 1e-129
118095631 4860 PREDICTED: probable E3 ubiquitin-protein 0.879 0.091 0.522 1e-129
257196144 4859 hect domain and RCC1-like domain 1 [Mus 0.889 0.092 0.517 1e-128
148694174 4870 mCG130390 [Mus musculus] 0.889 0.092 0.517 1e-128
348542108 4936 PREDICTED: probable E3 ubiquitin-protein 0.915 0.093 0.501 1e-128
224061683 4864 PREDICTED: probable E3 ubiquitin-protein 0.879 0.091 0.522 1e-128
344293366 4858 PREDICTED: probable E3 ubiquitin-protein 0.879 0.091 0.520 1e-128
354474338 4859 PREDICTED: probable E3 ubiquitin-protein 0.903 0.094 0.512 1e-128
>gi|270002031|gb|EEZ98478.1| hypothetical protein TcasGA2_TC000971 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 234/408 (57%), Positives = 300/408 (73%), Gaps = 7/408 (1%)

Query: 9    IPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKN 68
            + +  +  I D++VGTEHVL ++  G+V  WG   + QLGL +    R P+++  LS+K 
Sbjct: 3615 MTSLSDYSIEDLAVGTEHVLFLTTCGKVLGWGMTGEGQLGLPHVSLVRHPEIITELSDKG 3674

Query: 69   IRQVSAGRSHSAAWTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLK 128
            IRQ+S GR+HSAAW+APPLP   PG T   SL  GLP +IP  Y HLQ   + LI+AR+ 
Sbjct: 3675 IRQISTGRTHSAAWSAPPLPQRVPGVT--RSLTFGLPANIPSQYDHLQGLSIELIQARVM 3732

Query: 129  LLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSWLVHPSLRPLFAPRVYTLPLVRSVGKTM 188
             L+RFSD++Y    L+PL +  Q+ ++  P   LV PSLRPL A RVYT P VR +GKTM
Sbjct: 3733 FLHRFSDMLYSCWTLMPLSH--QEGMKLPPLEGLVSPSLRPLLASRVYTFPFVRCIGKTM 3790

Query: 189  LVGKNFGPSVTVRRLTTK--SKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGA 246
            + GKN+GP + V+R+  +  + +  KP+F QI++QVV +K  +LRLPSRAWKVKL+GEGA
Sbjct: 3791 VQGKNYGPQIIVKRINQEDVTGRKCKPVFVQIAKQVVDIKPQELRLPSRAWKVKLVGEGA 3850

Query: 247  DDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFK 306
            DDAGGVFDDTITEMC E+ SG VPLLV TPN V + G+NRDRY+LNP L+ + Q +  FK
Sbjct: 3851 DDAGGVFDDTITEMCQEITSGIVPLLVPTPNAVNEDGFNRDRYLLNPQLN-TQQHIAWFK 3909

Query: 307  FLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGV 366
            FLGILFGVAIRT+KPL +PL+P++WKLIV E VT  DLE+ D +Y QSLR+IRDIHLSGV
Sbjct: 3910 FLGILFGVAIRTRKPLAIPLAPMMWKLIVGEVVTIEDLEEVDCMYVQSLRSIRDIHLSGV 3969

Query: 367  TEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
             E NF E+IPLECFEG S TG++ PIV GG+S+PLTF NR QY+E A+
Sbjct: 3970 GEENFHEVIPLECFEGTSCTGKVLPIVYGGRSIPLTFHNRTQYFERAV 4017

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|149574281|ref|XP_001514757.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|326926479|ref|XP_003209427.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Meleagris gallopavo] Back     alignment and taxonomy information
>gi|118095631|ref|XP_413753.2| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Gallus gallus] Back     alignment and taxonomy information
>gi|257196144|ref|NP_663592.3| hect domain and RCC1-like domain 1 [Mus musculus] Back     alignment and taxonomy information
>gi|148694174|gb|EDL26121.1| mCG130390 [Mus musculus] Back     alignment and taxonomy information
>gi|348542108|ref|XP_003458528.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|224061683|ref|XP_002192615.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|344293366|ref|XP_003418394.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1 [Loxodonta africana] Back     alignment and taxonomy information
>gi|354474338|ref|XP_003499388.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Cricetulus griseus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query506
UNIPROTKB|E1C4H74863 HERC1 "Uncharacterized protein 0.798 0.083 0.539 1.4e-108
UNIPROTKB|J9NWD84118 HERC1 "Uncharacterized protein 0.798 0.098 0.536 1e-107
UNIPROTKB|F1MNS04857 HERC1 "Uncharacterized protein 0.798 0.083 0.534 1.3e-107
UNIPROTKB|F1S0984859 HERC1 "Uncharacterized protein 0.798 0.083 0.534 1.7e-107
UNIPROTKB|Q157514861 HERC1 "Probable E3 ubiquitin-p 0.798 0.083 0.531 1.7e-107
UNIPROTKB|E2QYQ54863 HERC1 "Uncharacterized protein 0.798 0.083 0.536 1.7e-107
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.760 0.080 0.301 2e-43
MGI|MGI:103234 4836 Herc2 "hect (homologous to the 0.760 0.079 0.301 2.1e-43
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.760 0.079 0.301 3.4e-43
RGD|1307989 3607 Herc2 "HECT and RLD domain con 0.758 0.106 0.301 3.9e-43
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 1082 (385.9 bits), Expect = 1.4e-108, Sum P(2) = 1.4e-108
 Identities = 221/410 (53%), Positives = 279/410 (68%)

Query:     7 RHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSN 66
             + +P    + I DI+VG EH LA+S+TG V+AWG+NS+ QLGLG+  + REP L+  L  
Sbjct:  4285 QQVPVLSGVFIEDIAVGAEHTLALSSTGDVYAWGSNSEGQLGLGHTNHVREPTLITVLQG 4344

Query:    67 KNIRQVSAGRSHSAAWTAXXXXXXXXXXXXXXXXRLGLPQDIPDHYGHLQNKPLPLIRAR 126
             KNIRQ+SAGR HSAAWTA                +LGLP  IP  YG L+   +  +RAR
Sbjct:  4345 KNIRQISAGRCHSAAWTAPPVPPRAPGVSVPL--QLGLPDAIPPQYGALKEVSIHTVRAR 4402

Query:   127 LKLLNRFSDLIYQVVRLLPLGNVDQDWVQ-CTPYSW-LVHPSLRPLFAPRVYTLPLVRSV 184
             L+LL  FSDL+Y   RLL L   +Q+        +W +V   LRPL APRVYTLP+VRS+
Sbjct:  4403 LRLLYHFSDLMYSSWRLLNLSPNNQNSTSHYNAGTWGIVQGQLRPLLAPRVYTLPMVRSI 4462

Query:   185 GKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGE 244
             GKTM+ GKN+GP +TV+R++T+ ++  KPIF QI+RQVVK+  SDLRLPSRAWKVKL+GE
Sbjct:  4463 GKTMVQGKNYGPQITVKRISTRGRKC-KPIFVQIARQVVKLNASDLRLPSRAWKVKLVGE 4521

Query:   245 GADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMH 304
             GADDAGGVFDDTITEMC EL +G V LL+ +PN  A+ GYNRDR++ NP      + LM 
Sbjct:  4522 GADDAGGVFDDTITEMCQELETGVVDLLIPSPNATAEVGYNRDRFLFNPSACLD-EHLMQ 4580

Query:   305 FKFLGILFGVAIRTKKXXXXXXXXXVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLS 364
             FKFLGIL GVAIRTKK         VWK +   P+   DLE+ D LY Q+L +I  I  S
Sbjct:  4581 FKFLGILMGVAIRTKKPLDLHLAPMVWKQLCCIPLILEDLEEVDLLYVQTLNSILHIEDS 4640

Query:   365 GVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
             G+TE NF E+IPL+ F G S  G++ PI+ GG S+PLTF+NR +Y E AI
Sbjct:  4641 GITEENFHEMIPLDSFVGQSADGKMVPIIPGGNSIPLTFSNRKEYVERAI 4690
GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
UNIPROTKB|J9NWD8 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1MNS0 HERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S098 HERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q15751 HERC1 "Probable E3 ubiquitin-protein ligase HERC1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYQ5 HERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:103234 Herc2 "hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1307989 Herc2 "HECT and RLD domain containing E3 ubiquitin protein ligase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q15751HERC1_HUMAN6, ., 3, ., 2, ., -0.51820.87940.0915yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
cd00078352 cd00078, HECTc, HECT domain; C-terminal catalytic 1e-34
smart00119328 smart00119, HECTc, Domain Homologous to E6-AP Carb 2e-28
pfam00632298 pfam00632, HECT, HECT-domain (ubiquitin-transferas 1e-20
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-14
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 3e-13
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-12
COG5021872 COG5021, HUL4, Ubiquitin-protein ligase [Posttrans 3e-10
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 7e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-07
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-07
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 8e-07
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-06
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-05
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 6e-05
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-04
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-04
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 0.002
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 0.003
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 0.004
>gnl|CDD|238033 cd00078, HECTc, HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information 
 Score =  132 bits (335), Expect = 1e-34
 Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 23/217 (10%)

Query: 198 VTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTI 257
           +TVRR           I     RQ+ K+  SDL+      +V+ +GE   DAGGV  +  
Sbjct: 3   ITVRRDR---------ILEDALRQLSKVSSSDLKKV---LEVEFVGEEGIDAGGVTREFF 50

Query: 258 TEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIR 317
           T +  EL + +  L   TP+       +      NP        L  F+FLG L G A+ 
Sbjct: 51  TLVSKELFNPSYGLFRYTPD-------DSGLLYPNPSSFADEDHLKLFRFLGRLLGKALY 103

Query: 318 TKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPL 377
             + L LP S   +K ++ +P++  DLE+ D    +SL+ + D       +      I L
Sbjct: 104 EGRLLDLPFSRAFYKKLLGKPLSLEDLEELDPELYKSLKELLDNDGD-EDDLELTFTIEL 162

Query: 378 ECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
           +   G         +  GG+ +P+T  N+ +Y +  +
Sbjct: 163 DSSFG---GAVTVELKPGGRDIPVTNENKEEYVDLYV 196

It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ubiquitin molecules to the end of growing ubiquitin chains. Length = 352
>gnl|CDD|214523 smart00119, HECTc, Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>gnl|CDD|216035 pfam00632, HECT, HECT-domain (ubiquitin-transferase) Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227354 COG5021, HUL4, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 506
KOG0941|consensus850 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427|consensus443 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 99.97
cd00078352 HECTc HECT domain; C-terminal catalytic domain of 99.97
COG5021872 HUL4 Ubiquitin-protein ligase [Posttranslational m 99.95
smart00119336 HECTc Domain Homologous to E6-AP Carboxyl Terminus 99.95
KOG0939|consensus720 99.95
KOG1427|consensus443 99.94
KOG0942|consensus1001 99.9
KOG4427|consensus 1096 99.86
KOG0783|consensus 1267 99.75
KOG0170|consensus621 99.75
KOG1428|consensus 3738 99.72
KOG0783|consensus 1267 99.71
PF00632317 HECT: HECT-domain (ubiquitin-transferase); InterPr 99.66
KOG1428|consensus 3738 99.63
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.61
KOG0940|consensus358 99.58
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.49
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.33
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.27
KOG0943|consensus3015 98.79
KOG0941|consensus 850 98.25
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 81.44
>KOG0941|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.3e-37  Score=300.61  Aligned_cols=249  Identities=20%  Similarity=0.287  Sum_probs=217.9

Q ss_pred             CCccHHHHHHHHHhcCCCCCccCCCceEEEEEecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceE
Q psy15270        210 TVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRY  289 (506)
Q Consensus       210 ~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~  289 (506)
                      .|..+..++.+++......|++   ++++|+|.||.|+|+||+.+|||.++.+++++|.+|||+...+..        ..
T Consensus       507 rR~~lv~Dsl~~l~~~~~~Dl~---K~L~V~F~gE~g~DaGGv~kEfF~ll~~ei~~p~~GmF~~~e~s~--------~~  575 (850)
T KOG0941|consen  507 RRDHLVEDALRQLSMISMSDLK---KQLKVEFVGEEGVDAGGVRKEFFQLLVEEIFNPEYGMFTYDEESS--------LL  575 (850)
T ss_pred             ehhhhHHHHHHHHHhhhhhhhh---cceEEEECCCcccccCchHHHHHHHHHHHHcCccccCeecccccc--------ee
Confidence            6888999999999999999999   789999999999999999999999999999999999999887643        37


Q ss_pred             EeCCCCCCchhhhhHHHHHHHHHHhhhcCCCCcCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCCcC
Q psy15270        290 ILNPDLSESLQSLMHFKFLGILFGVAIRTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEA  369 (506)
Q Consensus       290 ~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~~  369 (506)
                      |+++.......   +|.++|+++|+||++...++++||..+||.+++.+.+++|+.++.|.++++|+.+++.+..++. +
T Consensus       576 WF~~~~~~~~~---~y~liGil~GLAIyN~~ildlpFPlAlykkLl~~~~sl~DL~elsP~~~~sL~~lL~y~gdd~e-d  651 (850)
T KOG0941|consen  576 WFNPSPFEEEK---QYHLIGILCGLAIYNNTILDLPFPLALYKKLLDKPPSLEDLKELSPSLGKSLKELLDYEGDDVE-D  651 (850)
T ss_pred             eecCCCCCccc---eeeehhHHHHHHHhccceecCCCcHHHHHHHhcCCCCHHHHHhhChHhhhhHHHHHhccccchh-h
Confidence            78777762222   6888999999999999999999999999999999999999999999999999999997754332 3


Q ss_pred             cccccccCcceeeec-C--CCCccccccCCCceeeeeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCC
Q psy15270        370 NFPEIIPLECFEGAS-W--TGRITPIVTGGQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTT  446 (506)
Q Consensus       370 ~~~~~~~~~~f~~~~-~--~g~~~~l~~~g~~~~v~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~  446 (506)
                      .|..     +|...- .  ..+..+|+|+|.+++|+.+|+.+||.+.+...++.++              ..+..++..|
T Consensus       652 ~f~l-----~F~i~~~~~g~~~~~~L~~nG~~i~vt~~Nr~efV~~Yvd~~~n~sv--------------~~q~~aF~~G  712 (850)
T KOG0941|consen  652 VFDL-----TFQISQDDNGIPRTYELKPNGDEIPVTNENRREFVNLYVDYILNKSV--------------KKQFEAFRRG  712 (850)
T ss_pred             heee-----EEEEEehhcCccceeeccCCCcccccccccHHHHHHHHHHHHHhhhH--------------HHHHHHHHHH
Confidence            3333     233221 1  3457899999999999999999999999999999999              8999999999


Q ss_pred             CcccccEEeec-cCCCcEEEEEecCCcceEEEecCCcEEEEEcCCCC
Q psy15270        447 MNWKVPERVVA-LNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYG  492 (506)
Q Consensus       447 ~~~~~P~~v~~-l~~~~v~~i~~G~~ht~~~~~~~g~vy~wG~n~~G  492 (506)
                      |..+.-..++. |.++|++.+.||....++...++.+.|.-|+.+..
T Consensus       713 F~~v~~~~~l~lf~peEl~~li~G~~~~Dw~~l~~~~~Y~ggy~~~~  759 (850)
T KOG0941|consen  713 FYKVCDENLLRLFQPEELEKLICGSEDYDWKALEETTEYDGGYTSDS  759 (850)
T ss_pred             HHHHhchhhhhhcCHHHHHHHHhCCCccCHHHHhhhceecCcccCCC
Confidence            99998888888 99999999999999999988999999998877643

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>cd00078 HECTc HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3) Back     alignment and domain information
>COG5021 HUL4 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00119 HECTc Domain Homologous to E6-AP Carboxyl Terminus with Back     alignment and domain information
>KOG0939|consensus Back     alignment and domain information
>KOG1427|consensus Back     alignment and domain information
>KOG0942|consensus Back     alignment and domain information
>KOG4427|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0170|consensus Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>PF00632 HECT: HECT-domain (ubiquitin-transferase); InterPro: IPR000569 The name HECT comes from 'Homologous to the E6-AP Carboxyl Terminus' [] Back     alignment and domain information
>KOG1428|consensus Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0940|consensus Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0943|consensus Back     alignment and domain information
>KOG0941|consensus Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 2e-12
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 6e-12
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 7e-12
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 8e-12
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-11
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-11
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 7e-07
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 9e-07
2xbb_A386 Nedd4 Hect:ub Complex Length = 386 2e-06
3jw0_C385 E2~ubiquitin-Hect Length = 385 2e-05
3jvz_C385 E2~ubiquitin-Hect Length = 385 2e-05
1zvd_A380 Regulation Of Smurf2 Ubiquitin Ligase Activity By A 6e-05
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 9e-05
2oni_A392 Catalytic Domain Of The Human Nedd4-Like E3 Ligase 6e-04
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure 
Iteration: 1

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 1/111 (0%)
Query: 396 GQSVPLTFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERV 455
           G  VP+   +        + CG + S  +T +G +YT+G GDY RLGHG+  + + P +V
Sbjct: 252 GCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQV 311
Query: 456 VALNKVHVESVSCGLNHTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
             L    V +++ G  H VC  + G+ VY +GD + G+LG G T     P+
Sbjct: 312 QGLQGKKVIAIATGSLHCVCCTEDGE-VYTWGDNDEGQLGDGTTNAIQRPR 361
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|2XBB|A Chain A, Nedd4 Hect:ub Complex Length = 386 Back     alignment and structure
>pdb|3JW0|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|3JVZ|C Chain C, E2~ubiquitin-Hect Length = 385 Back     alignment and structure
>pdb|1ZVD|A Chain A, Regulation Of Smurf2 Ubiquitin Ligase Activity By Anchoring The E2 To The Hect Domain Length = 380 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|2ONI|A Chain A, Catalytic Domain Of The Human Nedd4-Like E3 Ligase Length = 392 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query506
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-30
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-30
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-30
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-30
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-29
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-28
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-21
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-19
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-19
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-19
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-18
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-18
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-17
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-16
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-09
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-30
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-29
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 8e-29
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-27
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-27
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-26
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-21
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-20
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-19
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 4e-19
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-18
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-18
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-17
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 2e-16
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-06
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 9e-28
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-26
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-25
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 6e-23
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-23
3mvd_K423 Regulator of chromosome condensation; protein-DNA 8e-23
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-19
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-18
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-16
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-15
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-15
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-14
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-14
3mvd_K423 Regulator of chromosome condensation; protein-DNA 2e-13
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 7e-10
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-26
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-25
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-25
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-23
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-23
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-22
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-18
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-17
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-17
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-15
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-14
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-13
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-13
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 9e-13
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 3e-08
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-26
3of7_A 473 Regulator of chromosome condensation; beta-propell 6e-25
3of7_A 473 Regulator of chromosome condensation; beta-propell 6e-24
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-23
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-21
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-18
3of7_A 473 Regulator of chromosome condensation; beta-propell 1e-18
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-17
3of7_A473 Regulator of chromosome condensation; beta-propell 7e-16
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-15
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-14
3of7_A473 Regulator of chromosome condensation; beta-propell 2e-14
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-14
3of7_A473 Regulator of chromosome condensation; beta-propell 6e-12
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-07
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 2e-16
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 3e-16
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 4e-16
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 1e-15
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 3e-14
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-13
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-12
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-11
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-11
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 4e-11
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-10
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-09
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-08
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-08
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-07
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 1e-06
3qhy_B 282 Beta-lactamase inhibitory protein II; enyzme-inhib 2e-04
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 2e-12
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
 Score =  121 bits (307), Expect = 2e-30
 Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 1/95 (1%)

Query: 412 AAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLN 471
             +A G +H+A VT +G LY +G G YG LG G   +  VPERV +     +  V+CG  
Sbjct: 176 KMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWR 235

Query: 472 HTVCIADKGKAVYAFGDGEYGKLGLGNTGLKPTPQ 506
           HT+ ++  G  +Y +G  +YG+LG G+      P 
Sbjct: 236 HTISVSYSGA-LYTYGWSKYGQLGHGDLEDHLIPH 269
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Length = 380 Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Length = 429 Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Length = 358 Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Length = 405 Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Length = 374 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Length = 392 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3of7_A 473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3h1d_A405 E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, 99.98
1zvd_A380 SMAD ubiquitination regulatory factor 2; ubiquitin 99.97
1nd7_A374 WW domain-containing protein 1; HECT, ubiquitin, l 99.97
3olm_A429 E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S 99.97
1c4z_A358 E6AP, ubiquitin-protein ligase E3A; bilobal struct 99.96
2oni_A392 E3 ubiquitin-protein ligase NEDD4-like protein; al 99.96
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 99.95
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.71
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 90.72
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=3.7e-46  Score=367.43  Aligned_cols=317  Identities=22%  Similarity=0.339  Sum_probs=226.3

Q ss_pred             CCCceeeCCCCCCCEEEEEcCCCceEEEecCC-CEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEE
Q psy15270          3 GTSGRHIPAFKNIHIVDISVGTEHVLAVSNTG-QVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAA   81 (506)
Q Consensus         3 ~~~P~~v~~l~~~~i~~va~G~~Ht~al~~~G-~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~a   81 (506)
                      +.+|++|+.+++.+|++|+||..|++||+.+| +||+||.|.+||||+++..+..+|++|..+.+.+|++|+||.+|++|
T Consensus        56 ~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~ia~G~~h~~a  135 (406)
T 4d9s_A           56 RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLA  135 (406)
T ss_dssp             EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECSSEEEE
T ss_pred             CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCCccccceEecccCCCCEEEEEEChhheEE
Confidence            35799999999999999999999999999986 99999999999999999999999999999988899999999999999


Q ss_pred             EeCCCCceecCCCCCCCCCccCCCCCCCCccCCCCCCChHHHHHHHHHHHHHHhhhhhhccceeCCCCCccccccccccc
Q psy15270         82 WTAPPLPPHTPGHTPSSSLRLGLPQDIPDHYGHLQNKPLPLIRARLKLLNRFSDLIYQVVRLLPLGNVDQDWVQCTPYSW  161 (506)
Q Consensus        82 l~~~G~vy~~WG~~~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~  161 (506)
                      |+++|+|| +||.  |.+||||++...+...|....                      .                     
T Consensus       136 lt~~G~v~-~wG~--n~~GqLG~g~~~~~~~p~~v~----------------------~---------------------  169 (406)
T 4d9s_A          136 VTMEGEVQ-SWGR--NQNGQLGLGDTEDSLVPQKIQ----------------------A---------------------  169 (406)
T ss_dssp             EETTSCEE-EEEC--CTTSTTCSSSCCCEEEEEECG----------------------G---------------------
T ss_pred             EcCCCcEE-EeCC--CCCccCCCCCCCCcccceEec----------------------c---------------------
Confidence            99999999 9999  999999976433222211000                      0                     


Q ss_pred             ccccCccccccccccchHHHHHHhhhcccCCCCCCeEEEecccccCCCCCccHHHHHHHHHhcCCCCCccCCCceEEEEE
Q psy15270        162 LVHPSLRPLFAPRVYTLPLVRSVGKTMLVGKNFGPSVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKL  241 (506)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~v~f  241 (506)
                           +..   ..+..          ...+..                                            ..-+
T Consensus       170 -----~~~---~~i~~----------va~G~~--------------------------------------------hs~a  187 (406)
T 4d9s_A          170 -----FEG---IRIKM----------VAAGAE--------------------------------------------HTAA  187 (406)
T ss_dssp             -----GTT---CCEEE----------EEECSS--------------------------------------------EEEE
T ss_pred             -----cCC---CcEEE----------EecCCC--------------------------------------------eEEE
Confidence                 000   00000          000000                                            0001


Q ss_pred             ecccccCCCCchHHHHHHHHHHhcCCCCCceEeCCCCCCCCCCCcceEEeCCCCCCchhhhhHHHHHHHHHHhhhcCCCC
Q psy15270        242 LGEGADDAGGVFDDTITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAIRTKKP  321 (506)
Q Consensus       242 ~ge~g~d~gG~~re~~~~~~~~~~~~~~~l~~~~~n~~~~~g~~~~~~~~~p~~~~~~~~~~~~~~~G~~~~~a~~~~~~  321 (506)
                                             ...+..+|.|+.|..+++|.+.......|........       -++..+++...+.
T Consensus       188 -----------------------lt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~-------~~i~~va~G~~ht  237 (406)
T 4d9s_A          188 -----------------------VTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGG-------EKMSMVACGWRHT  237 (406)
T ss_dssp             -----------------------EETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCSTT-------CCEEEEEECSSEE
T ss_pred             -----------------------EeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccCC-------ceEEEEEECCCcE
Confidence                                   1123368899999888887765433322222211000       1234455666666


Q ss_pred             cCCCCChhhhhhhcccCCCcCccccchHHHHHHHHHHHhcccCCCCcCcccccccCcceeeecCCCCccccccCCCceee
Q psy15270        322 LPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIPLECFEGASWTGRITPIVTGGQSVPL  401 (506)
Q Consensus       322 l~~~~~~~~~~~~~~~~~~~~d~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~g~~~~l~~~g~~~~v  401 (506)
                      +.+.-...+|.|..+..-.+..-..                    ..                            ...|.
T Consensus       238 ~~l~~~G~v~~wG~n~~GqlG~g~~--------------------~~----------------------------~~~p~  269 (406)
T 4d9s_A          238 ISVSYSGALYTYGWSKYGQLGHGDL--------------------ED----------------------------HLIPH  269 (406)
T ss_dssp             EEEETTCCEEEEECCTTSTTCSSSC--------------------CC----------------------------EEEEE
T ss_pred             EEEcCCCCEEEeeCCCCCCCCCCCC--------------------cC----------------------------ccccE
Confidence            6666666666665544332211100                    00                            00111


Q ss_pred             eeccchhhhhhhhhcccceeEEEeeCCcEEEEecCCCCcccCCCCCcccccEEeeccCCCcEEEEEecCCcceEEEecCC
Q psy15270        402 TFANRLQYYEAAIACGFKHSAVVTSNGYLYTFGNGDYGRLGHGTTMNWKVPERVVALNKVHVESVSCGLNHTVCIADKGK  481 (506)
Q Consensus       402 ~~~n~~~~v~~~i~~g~~hs~alt~~G~v~~wG~n~~gqlg~~~~~~~~~P~~v~~l~~~~v~~i~~G~~ht~~~~~~~g  481 (506)
                      .........+.+|+||.+|++||+++|+||+||.|.+||||+++......|.++..+...+|++|+||..|+ +++++++
T Consensus       270 ~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~va~G~~hs-~alt~~G  348 (406)
T 4d9s_A          270 KLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQVSCGWRHT-LAVTERN  348 (406)
T ss_dssp             ECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEEEECSSEE-EEEETTS
T ss_pred             EecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEEEeCCCeE-EEEeCCC
Confidence            111111112567999999999999999999999999999999999999999999877777899999999997 7888999


Q ss_pred             cEEEEEcCCCCcccCCCCCCCCCCC
Q psy15270        482 AVYAFGDGEYGKLGLGNTGLKPTPQ  506 (506)
Q Consensus       482 ~vy~wG~n~~GqLG~g~~~~~~~P~  506 (506)
                      +||+||+|++||||+|++.++..|+
T Consensus       349 ~v~~wG~n~~GqLG~g~~~~~~~P~  373 (406)
T 4d9s_A          349 NVFAWGRGTNGQLGIGESVDRNFPK  373 (406)
T ss_dssp             CEEEEECCTTSTTCSSSCCCEEEEE
T ss_pred             CEEEecCCCCCccCCCCCCCCcCCE
Confidence            9999999999999999998887763
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3h1d_A E3 ubiquitin-protein ligase HUWE1; E3ligase, HECT, LOBE, alternative splicing, chromosomal rearrangement, cytoplasm, differentiation; 1.89A {Homo sapiens} PDB: 3g1n_A Back     alignment and structure
>1zvd_A SMAD ubiquitination regulatory factor 2; ubiquitin ligasecatalytic mechanism,X-RAY ligase; 2.10A {Homo sapiens} Back     alignment and structure
>1nd7_A WW domain-containing protein 1; HECT, ubiquitin, ligase, WWP1; 2.10A {Homo sapiens} SCOP: d.148.1.1 PDB: 3tug_A Back     alignment and structure
>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1c4z_A E6AP, ubiquitin-protein ligase E3A; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.148.1.1 PDB: 1d5f_A Back     alignment and structure
>2oni_A E3 ubiquitin-protein ligase NEDD4-like protein; alpha and beta protein (A + B), E3 ligase, HECT domain, UBL- conjugation pathway; HET: MSE; 2.20A {Homo sapiens} PDB: 3jvz_C 3jw0_C 2xbf_A 2xbb_A Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 506
d1nd7a_374 d.148.1.1 (A:) WW domain-containing protein 1, WWP 1e-25
d1c4za_350 d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) 3e-20
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-17
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-16
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-15
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-12
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 8e-12
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 4e-07
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-07
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 9e-05
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 0.002
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-06
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-05
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-04
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 0.002
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Hect, E3 ligase catalytic domain
superfamily: Hect, E3 ligase catalytic domain
family: Hect, E3 ligase catalytic domain
domain: WW domain-containing protein 1, WWP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 1e-25
 Identities = 47/218 (21%), Positives = 82/218 (37%), Gaps = 24/218 (11%)

Query: 197 SVTVRRLTTKSKQTVKPIFAQISRQVVKMKGSDLRLPSRAWKVKLLGEGADDAGGVFDDT 256
            + V R T         +F    +Q++ +K  DLR   R   V   GE   D GG+  + 
Sbjct: 25  KINVSRQT---------LFEDSFQQIMALKPYDLR---RRLYVIFRGEEGLDYGGLAREW 72

Query: 257 ITEMCGELLSGAVPLLVRTPNGVADTGYNRDRYILNPDLSESLQSLMHFKFLGILFGVAI 316
              +  E+L+    L             N     +NP  + +   L +F F+G    +A+
Sbjct: 73  FFLLSHEVLNPMYCLFEYAGK-------NNYCLQINPASTINPDHLSYFCFIGRFIAMAL 125

Query: 317 RTKKPLPLPLSPLVWKLIVQEPVTFTDLEDNDTLYAQSLRAIRDIHLSGVTEANFPEIIP 376
              K +    S   +K ++ + +T  DLE  DT +  SL  IRD ++           + 
Sbjct: 126 FHGKFIDTGFSLPFYKRMLSKKLTIKDLESIDTEFYNSLIWIRDNNIE-ECGLEMYFSVD 184

Query: 377 LECFEGASWTGRITPIVTGGQSVPLTFANRLQYYEAAI 414
           +E             +  GG ++ +T  N+ +Y     
Sbjct: 185 MEIL----GKVTSHDLKLGGSNILVTEENKDEYIGLMT 218
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Length = 350 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query506
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 99.97
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.96
d1nd7a_374 WW domain-containing protein 1, WWP1 {Human (Homo 99.95
d1c4za_350 Ubiquitin-protein ligase E3a (E6ap) {Human (Homo s 99.94
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 99.83
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 82.89
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=319.61  Aligned_cols=97  Identities=24%  Similarity=0.242  Sum_probs=84.7

Q ss_pred             CCCceeeCCCCCCCEEEEEcCCCceEEEecCCCEEEEeCCCCCCCCCCCCCCcCcCEEeccCCCCCEEEEEcCCCceEEE
Q psy15270          3 GTSGRHIPAFKNIHIVDISVGTEHVLAVSNTGQVFAWGNNSDAQLGLGNQINYREPQLVLALSNKNIRQVSAGRSHSAAW   82 (506)
Q Consensus         3 ~~~P~~v~~l~~~~i~~va~G~~Ht~al~~~G~vy~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~i~~Ia~G~~hs~al   82 (506)
                      +.+|.+|+.+++  |++|+||..|++||+++|+||+||.|.+||||+++..+..+|+++......+|++|+||..|++|+
T Consensus        37 ~~~P~~v~~~~~--i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~  114 (401)
T d1a12a_          37 RKKPALVSIPED--VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAAL  114 (401)
T ss_dssp             EEEEEEECCSSC--EEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEEE
T ss_pred             eccCEEeCCCCC--eEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceeec
Confidence            458999998866  999999999999999999999999999999999998876655555544455899999999999999


Q ss_pred             eCCCCceecCCCCCCCCCccCC
Q psy15270         83 TAPPLPPHTPGHTPSSSLRLGL  104 (506)
Q Consensus        83 ~~~G~vy~~WG~~~n~~GqLG~  104 (506)
                      +++|+|| +||.  |..+++++
T Consensus       115 ~~~g~v~-~wG~--~~~~~~~~  133 (401)
T d1a12a_         115 TDDGRVF-LWGS--FRDNNGVI  133 (401)
T ss_dssp             ETTSCEE-EEEC--EEETTEEE
T ss_pred             cccccce-eccc--cccccccc
Confidence            9999999 9999  76666553
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1nd7a_ d.148.1.1 (A:) WW domain-containing protein 1, WWP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure