Psyllid ID: psy15695

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------30
Protein Sequence
MDDVNLRIHLLCKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQNN
Secondary Structure (PSIPRED)
cccccccHHcccccccccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHccHccccccccccccccccccccccccccHHHHccccccccccccccccccHccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHEEEEEEEEEHHEcccccHcEccccccHHHHHHHHHHHHHcHcHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcccEEHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHHcEEccc
Coil and Loop (DISEMBL)
MDDVNLRIHLLckpmyqtgefhppvtytvifqpqstqsssmyesiyepinprppsdlssrsnyslyssnipppeaeVDALTDLLVHSldtssesdLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVectvtepsyfklctehtpthLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCwqrgdtdiSLIRYFVTEVleaitppytpefVQLFLpivendeitgtmrgdgendpvsEFIVHCKAHFVSQNN
Flexible Loop (DISEMBL)
MDDVNLRIHLLCKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQNN
Low Complexity Region (SEG)
MDDVNLRIHLLCKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPsdlssrsnyslyssnIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQNN
Disordered region (IsUnstruct)
****NLRIHLLCKPMYQTGEFHPPVTYTVIFQ***********************************************LTDLLVHSL******DLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMR******PVSEFIVHCKAHFV****
Disordered Region (DISOPRED)
****NLRIHLLCKP**********VTYTVIFQPQSTQSSSMYESIYE***********SRSNYS**************************SSESDLFAIEKVHSIC**************TLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQD******QLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVEN***************VSEFIVHCKAHFV****
Disordered Region (DISEMBL)
MDDVNLRIHLLCKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQNN
Disordered Region (DISPRO)
*DDVNLRIHLLCKPMYQTGEFHPPVTYTVIFQP*STQSSSMYESIYEPINPRPPSDLSS*SNY*L**SNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQN*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDDVNLRIHLLCKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVSQNN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	299	2.2.26 [Sep-21-2011]
Q24134	578	Negative elongation facto	yes	N/A	0.765	0.396	0.649	1e-83
Q922L6	591	Negative elongation facto	yes	N/A	0.672	0.340	0.603	2e-73
Q5RFA0	590	Negative elongation facto	yes	N/A	0.672	0.340	0.599	4e-73
Q8IXH7	590	Negative elongation facto	yes	N/A	0.672	0.340	0.599	5e-73
A5GFY4	590	Negative elongation facto	yes	N/A	0.672	0.340	0.594	4e-72

>sp|Q24134|NELFD_DROME Negative elongation factor D OS=Drosophila melanogaster GN=TH1 PE=1 SV=2

 Score =  310 bits (793), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/231 (64%), Positives = 184/231 (79%), Gaps = 2/231 (0%)

Query: 66  YSSNIPPPEAEVDALTDLLVHSLDTSSESDLFAIEKVHSICNSSKSSNELIAEITTLFHC 125
           Y+S +    A+   +T+ +++  +   +S + AIEK H+ICN  + S ELIAE+ TL++C
Sbjct: 349 YASAVIDQPAKKRPMTERMLNKEEL--KSTIQAIEKAHTICNVDQGSTELIAELQTLYNC 406

Query: 126 IRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELF 185
           I+YPVV VGVIRW+E  V EPSYFKL T+  PTHLA+LDEV   H  L  ++L L I LF
Sbjct: 407 IKYPVVGVGVIRWIENVVMEPSYFKLSTDSCPTHLAVLDEVAAVHPTLQQQILFLLIRLF 466

Query: 186 ESKQDELEILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEV 245
           ESKQDELEILVQLEM+KM+LDRMVNLL RGCVVPV++Y+KQC    DTDISLIRYFVTEV
Sbjct: 467 ESKQDELEILVQLEMKKMILDRMVNLLTRGCVVPVLRYIKQCCAIEDTDISLIRYFVTEV 526

Query: 246 LEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVHCKAHFVS 296
           LE IT PY+PEFVQLFLP+VEN+EITGTMRG+G+NDPVSEFIVHCKAH+ +
Sbjct: 527 LETITHPYSPEFVQLFLPMVENEEITGTMRGEGDNDPVSEFIVHCKAHYTT 577

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex, causes transcriptional pausing.
Drosophila melanogaster (taxid: 7227)

>sp|Q922L6|NELFD_MOUSE Negative elongation factor D OS=Mus musculus GN=Th1l PE=2 SV=2

 Score =  275 bits (704), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 122/202 (60%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 98  AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
           AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 390 AIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 449

Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
           P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct: 450 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 509

Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
           V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct: 510 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKA 569

Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
           +GE+DPV+EFI HCK++F+  N
Sbjct: 570 EGEHDPVTEFIAHCKSNFIVVN 591

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Mus musculus (taxid: 10090)

>sp|Q5RFA0|NELFD_PONAB Negative elongation factor D OS=Pongo abelii GN=TH1L PE=2 SV=1

 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 98  AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
           A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448

Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
           P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct: 449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 508

Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
           V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct: 509 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568

Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
           +GE+DPV+EFI HCK++F+  N
Sbjct: 569 EGEHDPVTEFIAHCKSNFIMVN 590

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Pongo abelii (taxid: 9601)

>sp|Q8IXH7|NELFD_HUMAN Negative elongation factor C/D OS=Homo sapiens GN=TH1L PE=1 SV=2

 Score =  274 bits (701), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 121/202 (59%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 98  AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
           A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448

Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
           P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct: 449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 508

Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
           V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct: 509 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568

Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
           +GE+DPV+EFI HCK++F+  N
Sbjct: 569 EGEHDPVTEFIAHCKSNFIMVN 590

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Homo sapiens (taxid: 9606)

>sp|A5GFY4|NELFD_PIG Negative elongation factor D OS=Sus scrofa GN=TH1L PE=2 SV=1

 Score =  271 bits (694), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 120/202 (59%), Positives = 170/202 (84%), Gaps = 1/202 (0%)

Query: 98  AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
           A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct: 389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448

Query: 157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
           P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct: 449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGH 508

Query: 217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
           V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct: 509 VLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568

Query: 277 DGENDPVSEFIVHCKAHFVSQN 298
           +GE+DPV+EFI HCK++F+  N
Sbjct: 569 EGEHDPVTEFIAHCKSNFILVN 590

Essential component of the NELF complex, a complex that negatively regulates the elongation of transcription by RNA polymerase II. The NELF complex, which acts via an association with the DSIF complex and causes transcriptional pausing, is counteracted by the P-TEFb kinase complex.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
242022458	580	Negative elongation factor D, putative [	0.662	0.341	0.828	6e-94
91078898	578	PREDICTED: similar to TH1 CG9984-PA [Tri	0.682	0.352	0.779	8e-94
193211439	580	negative elongation factor D [Nasonia vi	0.655	0.337	0.816	4e-93
340722089	580	PREDICTED: LOW QUALITY PROTEIN: negative	0.822	0.424	0.667	6e-93
350420164	580	PREDICTED: negative elongation factor D-	0.822	0.424	0.667	6e-93
332021804	587	Negative elongation factor D [Acromyrmex	0.655	0.333	0.816	2e-92
307184650	579	Negative elongation factor D [Camponotus	0.655	0.338	0.811	5e-92
383865827	384	PREDICTED: negative elongation factor D-	0.822	0.640	0.660	8e-92
380011013	580	PREDICTED: negative elongation factor D-	0.822	0.424	0.667	1e-91
328779879	463	PREDICTED: negative elongation factor D	0.822	0.531	0.667	1e-91

>gi|242022458|ref|XP_002431657.1| Negative elongation factor D, putative [Pediculus humanus corporis] gi|212516965|gb|EEB18919.1| Negative elongation factor D, putative [Pediculus humanus corporis]

 Score =  350 bits (897), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 164/198 (82%), Positives = 179/198 (90%)

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH ICN++K S ELIAE+ +L+ CI+ PVV+VG++RWVE TVTEPSYFKL TEHTP
Sbjct: 381 AIEKVHGICNTAKGSGELIAELGSLYQCIKCPVVAVGIVRWVEFTVTEPSYFKLSTEHTP 440

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVVTCH  LH KVL L IELFESKQDELEILVQLEMRKMLLDRMVNLL RGCV
Sbjct: 441 IHLALLDEVVTCHPLLHTKVLTLLIELFESKQDELEILVQLEMRKMLLDRMVNLLSRGCV 500

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVVKYVK CW RGDTDISLIRYFVTEVLEA+ PPYT EFVQLFLP+VEN+EITG+MRGD
Sbjct: 501 VPVVKYVKHCWTRGDTDISLIRYFVTEVLEAVAPPYTLEFVQLFLPMVENEEITGSMRGD 560

Query: 278 GENDPVSEFIVHCKAHFV 295
           GENDPVSEFIVHCKAH++
Sbjct: 561 GENDPVSEFIVHCKAHYM 578

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91078898|ref|XP_973390.1| PREDICTED: similar to TH1 CG9984-PA [Tribolium castaneum] gi|270004155|gb|EFA00603.1| hypothetical protein TcasGA2_TC003474 [Tribolium castaneum]

 Score =  349 bits (896), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 159/204 (77%), Positives = 184/204 (90%)

Query: 93  ESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLC 152
           ++ + +IE VH+ICN++K S+EL+AE+ TL+ C+RYPVVSVG+IRWVECTVTE SYFKL 
Sbjct: 373 QATIHSIETVHNICNTNKGSSELMAELATLYQCLRYPVVSVGIIRWVECTVTEASYFKLS 432

Query: 153 TEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLL 212
           TEHTP HLALLDEVVTCH  LH++VL L I LFESKQDELEILVQLEMRKM+LDRMVNLL
Sbjct: 433 TEHTPIHLALLDEVVTCHPLLHNQVLDLLIRLFESKQDELEILVQLEMRKMVLDRMVNLL 492

Query: 213 CRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITG 272
           C GCVVPVVKY+KQCWQ+GDTDISLIRYFVTEVLE I PPY+ EFV LF+P+VENDEITG
Sbjct: 493 CAGCVVPVVKYIKQCWQKGDTDISLIRYFVTEVLETIGPPYSSEFVHLFMPMVENDEITG 552

Query: 273 TMRGDGENDPVSEFIVHCKAHFVS 296
           TMRGDGENDPVSEFIV+CKA++ +
Sbjct: 553 TMRGDGENDPVSEFIVYCKANYTA 576

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193211439|ref|NP_001123224.1| negative elongation factor D [Nasonia vitripennis]

 Score =  347 bits (890), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 160/196 (81%), Positives = 178/196 (90%)

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ CN++K S ELIAEI TL+ CIR+PVVSVGVIRWVECTVTEPSYFKLCTEH P
Sbjct: 379 AIEKVHNTCNTNKGSTELIAEINTLYQCIRFPVVSVGVIRWVECTVTEPSYFKLCTEHCP 438

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH  LH KVL+L I+LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 439 IHLALLDEVVACHNLLHPKVLRLLIQLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 498

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTDISLIRYFVTEVLEAI PPY+ EF+QLFLP+VEN+EITG+MRGD
Sbjct: 499 VPVVSYIKQCWQRGDTDISLIRYFVTEVLEAIAPPYSGEFIQLFLPMVENEEITGSMRGD 558

Query: 278 GENDPVSEFIVHCKAH 293
           G+ND VSEFI++CKA 
Sbjct: 559 GDNDLVSEFIIYCKAQ 574

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340722089|ref|XP_003399442.1| PREDICTED: LOW QUALITY PROTEIN: negative elongation factor D-like [Bombus terrestris]

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 200/256 (78%), Gaps = 10/256 (3%)

Query: 41  MYESIYEP---INPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLF 97
           + +++++P   INP   S       Y+    +IP  +     L       L T+ +    
Sbjct: 327 LVDALFKPGVKINPEHKSKYIYLLAYAASVCDIPAKKGHSRKLNK---DELKTTIQ---- 379

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+IRWVECTVTEPSYFKLCTEH P
Sbjct: 380 AIEKVHNICNINKGSTELIAELQTLYQCIRFPVVSVGIIRWVECTVTEPSYFKLCTEHCP 439

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 440 VHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 499

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EF+ LFLP+VE++EITGTMRGD
Sbjct: 500 VPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAEFIHLFLPMVEDEEITGTMRGD 559

Query: 278 GENDPVSEFIVHCKAH 293
            +ND VSEFIVHCKAH
Sbjct: 560 SDNDLVSEFIVHCKAH 575

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350420164|ref|XP_003492420.1| PREDICTED: negative elongation factor D-like isoform 1 [Bombus impatiens] gi|350420167|ref|XP_003492421.1| PREDICTED: negative elongation factor D-like isoform 2 [Bombus impatiens]

 Score =  346 bits (888), Expect = 6e-93,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 200/256 (78%), Gaps = 10/256 (3%)

Query: 41  MYESIYEP---INPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLF 97
           + +++++P   INP   S       Y+    +IP  +     L       L T+ +    
Sbjct: 327 LVDALFKPGVKINPEHKSKYIYLLAYAASVCDIPAKKTHSRKLNK---DELKTTIQ---- 379

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+IRWVECTVTEPSYFKLCTEH P
Sbjct: 380 AIEKVHNICNINKGSTELIAELQTLYQCIRFPVVSVGIIRWVECTVTEPSYFKLCTEHCP 439

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 440 VHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 499

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EF+ LFLP+VE++EITGTMRGD
Sbjct: 500 VPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAEFIHLFLPMVEDEEITGTMRGD 559

Query: 278 GENDPVSEFIVHCKAH 293
            +ND VSEFIVHCKAH
Sbjct: 560 SDNDLVSEFIVHCKAH 575

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332021804|gb|EGI62150.1| Negative elongation factor D [Acromyrmex echinatior]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 160/196 (81%), Positives = 177/196 (90%)

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+IRWVECTVTEPSYFKLCTEH P
Sbjct: 387 AIEKVHNICNVNKGSTELIAELHTLYQCIRFPVVSVGIIRWVECTVTEPSYFKLCTEHCP 446

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVVTCH  LH K+L+L + LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 447 VHLALLDEVVTCHPLLHPKILRLLVHLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 506

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EFVQLFLP+VEN+EITGTMRG+
Sbjct: 507 VPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAEFVQLFLPMVENEEITGTMRGE 566

Query: 278 GENDPVSEFIVHCKAH 293
            END VSEFI+HCK H
Sbjct: 567 NENDLVSEFIIHCKTH 582

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184650|gb|EFN70979.1| Negative elongation factor D [Camponotus floridanus]

 Score =  343 bits (880), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 159/196 (81%), Positives = 176/196 (89%)

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVG+IRWVECTVTEPSYFKLCTEH P
Sbjct: 379 AIEKVHNICNINKGSTELIAELHTLYQCIRFPVVSVGIIRWVECTVTEPSYFKLCTEHCP 438

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH+ LH K+L L + LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 439 VHLALLDEVVVCHSLLHTKILNLLVHLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 498

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EFVQLFLP+VE++EITGTMRG+
Sbjct: 499 VPVVYYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAEFVQLFLPMVEDEEITGTMRGE 558

Query: 278 GENDPVSEFIVHCKAH 293
            END VSEFIVHCK H
Sbjct: 559 NENDLVSEFIVHCKTH 574

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865827|ref|XP_003708374.1| PREDICTED: negative elongation factor D-like [Megachile rotundata]

 Score =  342 bits (878), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 169/256 (66%), Positives = 200/256 (78%), Gaps = 10/256 (3%)

Query: 41  MYESIYEP---INPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLF 97
           + +++++P   INP   S       Y+    +IP  +     L       L T+ +    
Sbjct: 131 LVDALFKPGVKINPEHKSKYIYLLAYAASVCDIPAKKGHSRKLNK---DELKTTIQ---- 183

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+ CIR+PVVSVGVIRWVECTVTEPSYFKLCTEH P
Sbjct: 184 AIEKVHNICNINKGSTELIAELHTLYQCIRFPVVSVGVIRWVECTVTEPSYFKLCTEHCP 243

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH+ LH K+LQL ++LFESKQDELEILVQLEM+KML+DRMVNLL +GCV
Sbjct: 244 VHLALLDEVVVCHSLLHPKILQLLVQLFESKQDELEILVQLEMKKMLIDRMVNLLSKGCV 303

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EFV LFLP+VE++EITG+MRGD
Sbjct: 304 VPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTAEFVHLFLPMVEDEEITGSMRGD 363

Query: 278 GENDPVSEFIVHCKAH 293
            +ND VSEFI+HCKAH
Sbjct: 364 SDNDLVSEFIIHCKAH 379

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380011013|ref|XP_003689608.1| PREDICTED: negative elongation factor D-like [Apis florea]

 Score =  342 bits (877), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 199/256 (77%), Gaps = 10/256 (3%)

Query: 41  MYESIYEP---INPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLF 97
           + +++++P   INP   S       Y+    +IP  +     L       L T+ +    
Sbjct: 327 LVDALFKPGVKINPEHKSKYIYLLAYAASVCDIPAKKGHSRKLNK---DELKTTIQ---- 379

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+  IR+PVVSVGVIRWVECTVTEPSYFKLCTEH P
Sbjct: 380 AIEKVHNICNINKGSTELIAELQTLYQSIRFPVVSVGVIRWVECTVTEPSYFKLCTEHCP 439

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 440 VHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 499

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EF+ LFLP+VE++EITGTMRGD
Sbjct: 500 VPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTVEFIHLFLPMVEDEEITGTMRGD 559

Query: 278 GENDPVSEFIVHCKAH 293
            +ND VSEFIVHCKAH
Sbjct: 560 SDNDLVSEFIVHCKAH 575

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779879|ref|XP_394889.3| PREDICTED: negative elongation factor D [Apis mellifera]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 171/256 (66%), Positives = 199/256 (77%), Gaps = 10/256 (3%)

Query: 41  MYESIYEP---INPRPPSDLSSRSNYSLYSSNIPPPEAEVDALTDLLVHSLDTSSESDLF 97
           + +++++P   INP   S       Y+    +IP  +     L       L T+ +    
Sbjct: 210 LVDALFKPGVKINPEHKSKYIYLLAYAASVCDIPAKKGHSRKLNK---DELKTTIQ---- 262

Query: 98  AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTP 157
           AIEKVH+ICN +K S ELIAE+ TL+  IR+PVVSVGVIRWVECTVTEPSYFKLCTEH P
Sbjct: 263 AIEKVHNICNINKGSTELIAELQTLYQSIRFPVVSVGVIRWVECTVTEPSYFKLCTEHCP 322

Query: 158 THLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGCV 217
            HLALLDEVV CH+ LH KVLQL ++LFESKQDELEILVQLEM+KML+DRMVNLL RGCV
Sbjct: 323 VHLALLDEVVVCHSLLHPKVLQLLVQLFESKQDELEILVQLEMKKMLIDRMVNLLSRGCV 382

Query: 218 VPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGD 277
           VPVV Y+KQCWQRGDTD+SLIRYFVTEVLEAI PPYT EF+ LFLP+VE++EITGTMRGD
Sbjct: 383 VPVVCYIKQCWQRGDTDVSLIRYFVTEVLEAIAPPYTVEFIHLFLPMVEDEEITGTMRGD 442

Query: 278 GENDPVSEFIVHCKAH 293
            +ND VSEFIVHCKAH
Sbjct: 443 SDNDLVSEFIVHCKAH 458

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	299
FB|FBgn0010416	578	TH1 "TH1" [Drosophila melanoga	0.682	0.352	0.715	9e-77
MGI|MGI:1926424	591	Nelfcd "negative elongation fa	0.672	0.340	0.603	1.7e-68
UNIPROTKB|Q8IXH7	590	NELFCD "Negative elongation fa	0.672	0.340	0.599	2.7e-68
UNIPROTKB|F1NR08	602	TH1L "Uncharacterized protein"	0.672	0.333	0.599	3.5e-68
UNIPROTKB|Q5ZIQ8	583	TH1L "Uncharacterized protein"	0.672	0.344	0.599	3.5e-68
ZFIN|ZDB-GENE-040426-720	579	nelfcd "negative elongation fa	0.672	0.347	0.603	9.2e-68
UNIPROTKB|F1MW69	600	TH1L "Uncharacterized protein"	0.672	0.335	0.594	1.2e-67
UNIPROTKB|A5GFY4	590	TH1L "Negative elongation fact	0.672	0.340	0.594	1.5e-67
UNIPROTKB|F1PIH1	564	TH1L "Uncharacterized protein"	0.672	0.356	0.598	1.9e-67
DICTYBASE|DDB_G0268678	660	DDB_G0268678 "putative negativ	0.692	0.313	0.317	1.2e-22

FB|FBgn0010416 TH1 "TH1" [Drosophila melanogaster (taxid:7227)]

 Score = 773 (277.2 bits), Expect = 9.0e-77, P = 9.0e-77
 Identities = 146/204 (71%), Positives = 171/204 (83%)

Query:    93 ESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLC 152
             +S + AIEK H+ICN  + S ELIAE+ TL++CI+YPVV VGVIRW+E  V EPSYFKL 
Sbjct:   374 KSTIQAIEKAHTICNVDQGSTELIAELQTLYNCIKYPVVGVGVIRWIENVVMEPSYFKLS 433

Query:   153 TEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLL 212
             T+  PTHLA+LDEV   H  L  ++L L I LFESKQDELEILVQLEM+KM+LDRMVNLL
Sbjct:   434 TDSCPTHLAVLDEVAAVHPTLQQQILFLLIRLFESKQDELEILVQLEMKKMILDRMVNLL 493

Query:   213 CRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITG 272
              RGCVVPV++Y+KQC    DTDISLIRYFVTEVLE IT PY+PEFVQLFLP+VEN+EITG
Sbjct:   494 TRGCVVPVLRYIKQCCAIEDTDISLIRYFVTEVLETITHPYSPEFVQLFLPMVENEEITG 553

Query:   273 TMRGDGENDPVSEFIVHCKAHFVS 296
             TMRG+G+NDPVSEFIVHCKAH+ +
Sbjct:   554 TMRGEGDNDPVSEFIVHCKAHYTT 577

GO:0003729 "mRNA binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0007070 "negative regulation of transcription from RNA polymerase II promoter during mitosis" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0032021 "NELF complex" evidence=IPI

GO:0034244 "negative regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

MGI|MGI:1926424 Nelfcd "negative elongation factor complex member C/D, Th1l" [Mus musculus (taxid:10090)]

 Score = 695 (249.7 bits), Expect = 1.7e-68, P = 1.7e-68
 Identities = 122/202 (60%), Positives = 170/202 (84%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   390 AIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 449

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   450 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 509

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct:   510 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKA 569

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GE+DPV+EFI HCK++F+  N
Sbjct:   570 EGEHDPVTEFIAHCKSNFIVVN 591

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q8IXH7 NELFCD "Negative elongation factor C/D" [Homo sapiens (taxid:9606)]

 Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
 Identities = 121/202 (59%), Positives = 170/202 (84%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 508

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct:   509 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GE+DPV+EFI HCK++F+  N
Sbjct:   569 EGEHDPVTEFIAHCKSNFIMVN 590

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=TAS

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0050434 "positive regulation of viral transcription" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1NR08 TH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 121/202 (59%), Positives = 170/202 (84%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   401 AIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 460

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   461 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 520

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+EN+ I GT++ 
Sbjct:   521 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENESIAGTIKT 580

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GE+DPV+EFI HCK++F+  N
Sbjct:   581 EGEHDPVTEFIAHCKSNFIMMN 602

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

UNIPROTKB|Q5ZIQ8 TH1L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 121/202 (59%), Positives = 170/202 (84%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             AIE VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   382 AIETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 441

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   442 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 501

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+EN+ I GT++ 
Sbjct:   502 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENESIAGTIKT 561

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GE+DPV+EFI HCK++F+  N
Sbjct:   562 EGEHDPVTEFIAHCKSNFIMMN 583

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0032021 "NELF complex" evidence=IEA

ZFIN|ZDB-GENE-040426-720 nelfcd "negative elongation factor complex member C/D" [Danio rerio (taxid:7955)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 122/202 (60%), Positives = 168/202 (83%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             AIE VH++C N +K + EL+A ++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   378 AIETVHNLCCNENKGATELVAGLSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 437

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL I+LFE++  +L+++ Q+E++K LLDRMV+LL RG 
Sbjct:   438 PVHLALLDEISTCHQLLHPQVLQLLIKLFETEHSQLDVMEQMELKKTLLDRMVHLLSRGY 497

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ +TDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT+R 
Sbjct:   498 VLPVVGYIRKCLEKLNTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIRT 557

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GENDPV+EFI HCK++F+  N
Sbjct:   558 EGENDPVAEFIAHCKSNFIMMN 579

GO:0005634 "nucleus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1MW69 TH1L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 120/202 (59%), Positives = 170/202 (84%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   399 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 458

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   459 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 518

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct:   519 VLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 578

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GE+DPV+EFI HCK++F+  N
Sbjct:   579 EGEHDPVTEFIAHCKSNFILVN 600

GO:0032021 "NELF complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|A5GFY4 TH1L "Negative elongation factor D" [Sus scrofa (taxid:9823)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 120/202 (59%), Positives = 170/202 (84%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   389 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 448

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   449 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGH 508

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIR+FVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct:   509 VLPVVSYIRKCLEKLDTDISLIRHFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 568

Query:   277 DGENDPVSEFIVHCKAHFVSQN 298
             +GE+DPV+EFI HCK++F+  N
Sbjct:   569 EGEHDPVTEFIAHCKSNFILVN 590

GO:0032021 "NELF complex" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|F1PIH1 TH1L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
 Identities = 122/204 (59%), Positives = 171/204 (83%)

Query:    98 AIEKVHSIC-NSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHT 156
             A+E VH++C N +K ++EL+AE++TL+ CIR+PVV++GV++WV+ TV+EP YF+L T+HT
Sbjct:   361 AVETVHNLCCNENKGASELVAELSTLYQCIRFPVVAMGVLKWVDWTVSEPRYFQLQTDHT 420

Query:   157 PTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNLLCRGC 216
             P HLALLDE+ TCH  LH +VLQL ++LFE++  +L+++ QLE++K LLDRMV+LL RG 
Sbjct:   421 PVHLALLDEISTCHQLLHPQVLQLLVKLFETEHSQLDVMEQLELKKTLLDRMVHLLSRGY 480

Query:   217 VVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRG 276
             V+PVV Y+++C ++ DTDISLIRYFVTEVL+ I PPYT +FVQLFLPI+END I GT++ 
Sbjct:   481 VLPVVSYIRKCLEKLDTDISLIRYFVTEVLDVIAPPYTSDFVQLFLPILENDSIAGTIKT 540

Query:   277 DGENDPVSEFIV--HCKAHFVSQN 298
             +GE+DPV+EFIV  HCK++F+  N
Sbjct:   541 EGEHDPVTEFIVKAHCKSNFILVN 564

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0268678 DDB_G0268678 "putative negative transcription elongation factor NELF subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 271 (100.5 bits), Expect = 1.2e-22, P = 1.2e-22
 Identities = 72/227 (31%), Positives = 119/227 (52%)

Query:    85 VHSLDTSSESD--LF-----AIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSVGVIR 137
             ++S  +S+E D  +F     AIE VH+IC S+   +EL + + TL   + +P++S+G+++
Sbjct:   410 INSSSSSNEKDNNVFKDITRAIEIVHNICQSNPLGSELQSVVGTLKDHLDFPIISMGIMQ 469

Query:   138 WVECTVTEP----SYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELE 193
             W++  +T+     SY  LC    P +L  L ++   H      VL + +  FE +  +LE
Sbjct:   470 WIKHNLTDTTNLSSYNTLCV---PIYLDFLRDICLRHPLHRSVVLNILVSHFEVEAQDLE 526

Query:   194 ILVQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 253
              L  LEMRK ++D +V L   G V+PV+  ++  W     D SL RYF+ +VL+ I PPY
Sbjct:   527 SLAILEMRKNVIDNIVYLFSCGYVIPVLDTIES-WAP-KIDPSLTRYFINQVLDIIEPPY 584

Query:   254 TPEFVQLFLPIVENDEITGTMRGDGENDP-VSEFIVHCKAHFVSQNN 299
             +  F+     I++   I        + +P V  F+  CK   +  NN
Sbjct:   585 SQSFMDKMKSIIK---IINPFGESTKLEPSVQSFLDQCKNQLILNNN 628


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      299       284   0.00085  115 3  11 22  0.47    33
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  216 KB (2119 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  25.75u 0.08s 25.83t   Elapsed:  00:00:33
  Total cpu time:  25.75u 0.08s 25.83t   Elapsed:  00:00:35
  Start:  Thu Aug 15 14:07:06 2013   End:  Thu Aug 15 14:07:41 2013

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8IXH7	NELFD_HUMAN	No assigned EC number	0.5990	0.6722	0.3406	yes	N/A
Q922L6	NELFD_MOUSE	No assigned EC number	0.6039	0.6722	0.3401	yes	N/A
Q5RFA0	NELFD_PONAB	No assigned EC number	0.5990	0.6722	0.3406	yes	N/A
A5GFY4	NELFD_PIG	No assigned EC number	0.5940	0.6722	0.3406	yes	N/A
Q24134	NELFD_DROME	No assigned EC number	0.6493	0.7658	0.3961	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	299
pfam04858	582	pfam04858, TH1, TH1 protein	1e-109

>gnl|CDD|218295 pfam04858, TH1, TH1 protein

 Score =  328 bits (842), Expect = e-109
 Identities = 129/204 (63%), Positives = 158/204 (77%), Gaps = 1/204 (0%)

Query: 93  ESDLFAIEKVHSI-CNSSKSSNELIAEITTLFHCIRYPVVSVGVIRWVECTVTEPSYFKL 151
           +S + AIEK H+I CN+ +  +ELIAE++TL++CIR+PVV  GVI WV   VTEPSYF+L
Sbjct: 377 KSTIKAIEKAHAIICNAKRGKSELIAELSTLYNCIRFPVVGAGVIAWVRSAVTEPSYFRL 436

Query: 152 CTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMVNL 211
            T   P HLA+LDEV   H  L  +VL+L + LFES  DELEILVQLE++KMLLDRMV L
Sbjct: 437 VTNSNPVHLAVLDEVARKHVALQGQVLELLVALFESHGDELEILVQLELKKMLLDRMVEL 496

Query: 212 LCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEIT 271
           L RG VVPV+ Y  QCW+R DTDISLIRYFVTEVLE   PPY+ +FVQLFLP++EN+ I 
Sbjct: 497 LARGHVVPVITYACQCWRRLDTDISLIRYFVTEVLEIAGPPYSRDFVQLFLPLLENENIR 556

Query: 272 GTMRGDGENDPVSEFIVHCKAHFV 295
           GTMRG+G++DPV EFIVHCK  + 
Sbjct: 557 GTMRGEGDSDPVDEFIVHCKRRYT 580

TH1 is a highly conserved but uncharacterized metazoan protein. No homologue has been identified in Caenorhabditis elegans. TH1 binds specifically to A-Raf kinase. Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	299
PF04858	584	TH1: TH1 protein; InterPro: IPR006942 TH1 is a hig	100.0
PF14964	362	DUF4507: Domain of unknown function (DUF4507)	82.34

>PF04858 TH1: TH1 protein; InterPro: IPR006942 TH1 is a highly conserved but uncharacterised metazoan protein

Probab=100.00  E-value=1e-74  Score=586.48  Aligned_cols=283  Identities=49%  Similarity=0.841  Sum_probs=262.1

Q ss_pred             ccccccCCCCCCCcceeeeecCCCccccccchhhcccCCCCCCCccchHHHhhhccCCCCCChhhh--HHHHHHHHHhhh
Q psy15695         12 CKPMYQTGEFHPPVTYTVIFQPQSTQSSSMYESIYEPINPRPPSDLSSRSNYSLYSSNIPPPEAEV--DALTDLLVHSLD   89 (299)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~siye~i~~r~pSd~s~~~Ly~~Y~s~~pPpv~~l--p~~ldlLv~~lf   89 (299)
                      .+...++|.-..++++..   +.+++++..++++.++|+.+.++..++++||++|++++||||++|  |.|+|+|+|+||
T Consensus       260 e~~A~~~~~~vt~i~~aL---~~s~~~p~a~~ai~smLs~~~l~paDI~~Ly~~Y~~~~pPPV~lLR~P~~l~lLld~LF  336 (584)
T PF04858_consen  260 EREAAKRGHDVTDITLAL---NGSSSYPEACQAIASMLSSNALNPADITKLYRMYSSPDPPPVELLRHPQFLDLLLDALF  336 (584)
T ss_pred             HHHHHHcCCCcHHHHHHH---hcCccCchHHHHHHHHHhcCCCCHHHHHHHHHHhccCCCCCchhhcCHHHHHHHHHHHc
Confidence            344455565444555544   555678889999999999998888888899999999999999999  999999999999


Q ss_pred             c-----------------------------------CCh----HHHHHHHHHHHhhcCC-CCchhHHHHHHHHhhhcccC
Q psy15695         90 T-----------------------------------SSE----SDLFAIEKVHSICNSS-KSSNELIAEITTLFHCIRYP  129 (299)
Q Consensus        90 ~-----------------------------------~n~----~t~~Aie~a~~Ic~~~-~~~~el~~el~~L~~~i~~P  129 (299)
                      +                                   +|+    +|++|||+||+||+++ +|++++++|+++|++||++|
T Consensus       337 ~pg~~i~~e~r~kyi~LLAYAasV~e~~~~~~~~~~~~~del~~t~~ale~a~~ic~~~~~g~~~~~~el~~L~~~i~~P  416 (584)
T PF04858_consen  337 KPGSKINPEHRSKYIYLLAYAASVVETPAKNQPDRSLNCDELKSTKQALEKAHAICCNAARGSSELQAELPKLYSCIRYP  416 (584)
T ss_pred             CCCccCCHHHHHHHHHHHHHHHHcccccccCcccccccHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhCCC
Confidence            8                                   111    7888999999997665 67899999999999999999


Q ss_pred             ceeehhhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhHHHHHHHHHHHhccCChhHHHHHHHHHHHHHHHHH
Q psy15695        130 VVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRKMLLDRMV  209 (299)
Q Consensus       130 vVA~GVL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~~Vl~lL~~l~e~~~~~~d~l~~lElkr~ilD~mV  209 (299)
                      |||+|||+||+++|++|+||+..++++|+||+||||||+|||.||+.||++|+++|+++++++++++++|+||+++||||
T Consensus       417 vVa~GVL~wi~~~l~~~~~~~~~~~~~p~~L~LLdeIa~~Hp~lr~~vl~lL~~~le~~~~~l~~l~~le~kr~ilD~~V  496 (584)
T PF04858_consen  417 VVAMGVLRWIESFLTDPSYFSSITELTPVHLALLDEIATRHPLLRPSVLDLLVRLLESEGDELDILVQLELKRTILDRMV  496 (584)
T ss_pred             hhhHHHHHHHHHHhcCcchhhhccccCchHHHHhhHHHhcCHhhHHHHHHHHHHHHHccCCcccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHHHhhcCCCCCHHHHHHhhhhhcCccccccccCCCCCCcHHHHHHH
Q psy15695        210 NLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPYTPEFVQLFLPIVENDEITGTMRGDGENDPVSEFIVH  289 (299)
Q Consensus       210 ~L~s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~eVLe~i~PPYS~eFv~~fl~Ll~~~~i~~~l~~~~~~~~v~eFi~~  289 (299)
                      ||+++|||+|||+||++||.++++|+|||||||+||||+|+||||++|+++|+||+++++|+|+|++++++++|++|++|
T Consensus       497 ~L~s~G~VlPVl~~i~~~~~~~~iD~SLiRyFv~eVLeii~PPYS~~Fv~~~l~ll~~~~i~~~~~~~~~~~~v~~F~~~  576 (584)
T PF04858_consen  497 HLLSRGYVLPVLEYIRKCWARGDIDPSLIRYFVTEVLEIIGPPYSPEFVQLFLPLLENAEIRGGMRTEGDNDPVSEFIVH  576 (584)
T ss_pred             HHHhCCeeehHHHHHHHHHhccCCcHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhhhhccCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcccc
Q psy15695        290 CKAHFVSQ  297 (299)
Q Consensus       290 C~~~~~~~  297 (299)
                      ||+|++++
T Consensus       577 c~~~~~~~  584 (584)
T PF04858_consen  577 CKRNYIVV  584 (584)
T ss_pred             HHhccccC
Confidence            99999875

No homologue has been identified in Caenorhabditis elegans []. TH1 binds specifically to A-Raf kinase [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14964 DUF4507: Domain of unknown function (DUF4507)

Probab=82.34  E-value=14  Score=36.92  Aligned_cols=143  Identities=15%  Similarity=0.260  Sum_probs=80.7

Q ss_pred             HhhhcccCceeehhhHHHHhhhcCccccccccCCchhHHHHHHHHHHhcchhhH------------HHHHHHHHHHhccC
Q psy15695        122 LFHCIRYPVVSVGVIRWVECTVTEPSYFKLCTEHTPTHLALLDEVVTCHTFLHH------------KVLQLFIELFESKQ  189 (299)
Q Consensus       122 L~~~i~~PvVA~GVL~wv~~~l~~ps~~~l~~~stpv~L~LLdeIa~~HP~lr~------------~Vl~lL~~l~e~~~  189 (299)
                      -....+||-.|.-+|.=++.......   -.....+.-..+++|...+=+..|.            +.+++|+..|...+
T Consensus         9 ~L~~~~fp~~a~e~L~~le~l~~~r~---~~~~~~~~~~~lieefiF~~~~~r~~~~~~ln~lQELQLleiL~~yF~~~~   85 (362)
T PF14964_consen    9 SLRKLDFPSCAKEALSQLEKLCRSRG---PSPNQQDELMELIEEFIFQEPDDRGSQRKRLNALQELQLLEILCDYFQEQS   85 (362)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHhccC---CccccchHHHHHHHHHHhcCchhccCCCCCCCHHHHHHHHHHHHHHHcccC
Confidence            33445666666666665553222110   0001122334555555444433333            35666666666654


Q ss_pred             Ch------hHHH------HHHHHHHHHHHHHHHHHhcCcchhHHHHHHHhhhcCCCchHHHHHHHHHH------------
Q psy15695        190 DE------LEIL------VQLEMRKMLLDRMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEV------------  245 (299)
Q Consensus       190 ~~------~d~l------~~lElkr~ilD~mV~L~s~G~ViPVl~~i~~~~~~~~iD~SLiRyFv~eV------------  245 (299)
                      ++      .+.+      ...+-|..+|-++|-|--++-+.||++-+.-|.++..-..+..-+.+..+            
T Consensus        86 ~d~~r~~iF~~LF~~~~~~~~~~R~~lL~kLVS~AIa~~~~~VL~~a~~Wmqq~g~~s~~s~~La~~iv~dy~~l~p~~~  165 (362)
T PF14964_consen   86 DDAVRYAIFDSLFGGQGDDADESRMSLLSKLVSMAIALPCVPVLNCAATWMQQLGCSSSYSLRLAQMIVEDYCCLSPGSQ  165 (362)
T ss_pred             CHHHHHHHHHHHcCCCCCchhhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhccCCccH
Confidence            43      1111      11223889999999999999999999999999988555555444444433            


Q ss_pred             -----HhhcCCCCCHHHHHHhhhhhcC
Q psy15695        246 -----LEAITPPYTPEFVQLFLPIVEN  267 (299)
Q Consensus       246 -----Le~i~PPYS~eFv~~fl~Ll~~  267 (299)
                           |..++|.|--.|+-++..+-.+
T Consensus       166 ~~L~~l~~~sP~F~a~fitavt~ly~~  192 (362)
T PF14964_consen  166 ETLKQLPNVSPRFCANFITAVTSLYDN  192 (362)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHccC
Confidence                 4456666666666666565554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	299
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 8e-04
 Identities = 44/257 (17%), Positives = 77/257 (29%), Gaps = 63/257 (24%)

Query: 41  MYESI-YEPINPRPPSDLSSRSNYSLYSS-------NIPPPEAEVDALTDLLVHSLDTSS 92
           +   I  E   P   + +       LY+        N+   +     L   L   L+   
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ-PYLKLRQAL---LELRP 149

Query: 93  ESDLFAIEKVHSICNSSKSSNELIAEITTLFHCIRYPVVSV--GVIRWV---ECTVTEP- 146
             ++     +  +  S K+   +  ++     C+ Y V       I W+    C   E  
Sbjct: 150 AKNVL----IDGVLGSGKTW--VALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 147 --SYFKLCTEHTPTHLALLDEVVTCHTFLHHKVLQLFIELFESKQDELEILVQLEMRK-- 202
                KL  +  P   +  D         H   ++L I    S Q EL  L++ +  +  
Sbjct: 199 LEMLQKLLYQIDPNWTSRSD---------HSSNIKLRI---HSIQAELRRLLKSKPYENC 246

Query: 203 -MLLD--------RMVNLLCRGCVVPVVKYVKQCWQRGDTDISLIRYFVTEVLEAITPPY 253
            ++L            NL C+  +    K V        TD           L+  +   
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQV--------TDFLSAATTTHISLDHHSMTL 298

Query: 254 TP-EFVQLFLPIVENDE 269
           TP E   L L  ++   
Sbjct: 299 TPDEVKSLLLKYLDCRP 315

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00