Psyllid ID: psy15905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60
Protein Sequence
MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGAKK
Secondary Structure (PSIPRED)
cccccccccHHHHHcccccccccccccccccccccccccccccccEEccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHcccccHHHHHcccccccccccccccccccEEEEEEEccccccc
Coil and Loop (DISEMBL)
mqpipakplffdlaqnqlefpsledkldvkikpaagggsgqpagiSGFVKglwgwggakk
Flexible Loop (DISEMBL)
MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAagggsgqpagisGFVKGLwgwggakk
Low Complexity Region (SEG)
MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKpaagggsgqpagisgFVKGLWGWGGAKK
Disordered region (IsUnstruct)
********LFFDLAQ***************************AGISGFVKGLWGWG****
Disordered Region (DISOPRED)
**PIPAKPLFFDLAQNQLEFPS************************GFVKGLWGWGG***
Disordered Region (DISEMBL)
MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGAKK
Disordered Region (DISPRO)
*QPIPAKPLFFDLAQNQLEFPSLEDKLDVK************AGISGFVKGLWGWGGA**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGAKK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	60	2.2.26 [Sep-21-2011]
Q8BMA6	625	Signal recognition partic	yes	N/A	0.733	0.070	0.5	4e-09
Q9UHB9	627	Signal recognition partic	yes	N/A	0.733	0.070	0.5	4e-09
Q00004	622	Signal recognition partic	yes	N/A	0.733	0.070	0.5	4e-09
Q9VSS2	604	Signal recognition partic	yes	N/A	0.7	0.069	0.52	3e-06
Q1ZXE8	614	Signal recognition partic	yes	N/A	0.75	0.073	0.421	8e-05

>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68 PE=2 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 10/54 (18%)

Query: 2   QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGW 55
           QPIP KPLFFDLA N + FP LEDKL+ K K          +G++G++KG++G+
Sbjct: 580 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK----------SGLTGYIKGIFGF 623

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
Mus musculus (taxid: 10090)

>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68 PE=1 SV=2

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 10/54 (18%)

Query: 2   QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGW 55
           QPIP KPLFFDLA N + FP LEDKL+ K K          +G++G++KG++G+
Sbjct: 582 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK----------SGLTGYIKGIFGF 625

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Homo sapiens (taxid: 9606)

>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris GN=SRP68 PE=1 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 37/54 (68%), Gaps = 10/54 (18%)

Query: 2   QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGW 55
           QPIP KPLFFDLA N + FP LEDKL+ K K          +G++G++KG++G+
Sbjct: 577 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK----------SGLTGYIKGIFGF 620

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Canis familiaris (taxid: 9615)

>sp|Q9VSS2|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila melanogaster GN=Srp68 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 8/50 (16%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVK 50
           M+PIP KP+FFDLA   +E PSLE KL+    P   G S     I+GFVK
Sbjct: 552 MEPIPCKPIFFDLAMTYVELPSLEGKLE---SPGKKGAS-----ITGFVK 593

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, Srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Drosophila melanogaster (taxid: 7227)

>sp|Q1ZXE8|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium discoideum GN=srp68 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 12/57 (21%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPA-GISGFVKGLWGWG 56
           +QP+ AKP+FFDLA N + FPSL+ +         G  +G P+ G+ GF    WG G
Sbjct: 569 LQPVQAKPIFFDLAFNSVTFPSLDQR-------KKGSSTGTPSKGLFGF----WGRG 614

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
157125066	609	signal recognition particle 68 kda prote	0.866	0.085	0.689	2e-15
332375308	566	unknown [Dendroctonus ponderosae]	0.833	0.088	0.625	2e-12
156548218	567	PREDICTED: signal recognition particle 6	0.85	0.089	0.614	7e-12
66523933	576	PREDICTED: signal recognition particle 6	0.833	0.086	0.607	1e-11
380021068	576	PREDICTED: LOW QUALITY PROTEIN: signal r	0.833	0.086	0.607	1e-11
383865641	577	PREDICTED: signal recognition particle 6	0.833	0.086	0.625	1e-11
291237178	502	PREDICTED: signal recognition particle 6	0.816	0.097	0.637	5e-11
91089191	563	PREDICTED: similar to signal recognition	0.833	0.088	0.607	6e-11
321478017	598	hypothetical protein DAPPUDRAFT_220901 [	0.85	0.085	0.542	8e-11
350398272	575	PREDICTED: signal recognition particle 6	0.833	0.086	0.589	8e-11

>gi|157125066|ref|XP_001660604.1| signal recognition particle 68 kda protein [Aedes aegypti] gi|108873787|gb|EAT38012.1| AAEL010060-PA [Aedes aegypti]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 40/58 (68%), Positives = 47/58 (81%), Gaps = 6/58 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGA 58
           MQPIPAKPLFFDLA N +EFPSLEDK++ K      GG+ Q AG+SGFVKGL+GWGG+
Sbjct: 555 MQPIPAKPLFFDLALNFVEFPSLEDKVEQK------GGAKQAAGMSGFVKGLFGWGGS 606

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375308|gb|AEE62795.1| unknown [Dendroctonus ponderosae]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 40/56 (71%), Gaps = 6/56 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWG 56
           M+P+PAKPLFFDLA N + FP L +KL+ K K   G      AGISGFVKGLWGWG
Sbjct: 515 MEPVPAKPLFFDLANNLVAFPDLTEKLEGKTKGKQG------AGISGFVKGLWGWG 564

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548218|ref|XP_001607102.1| PREDICTED: signal recognition particle 68 kDa protein-like [Nasonia vitripennis]

 Score = 74.7 bits (182), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 38/57 (66%), Gaps = 6/57 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGG 57
           MQ IP KPLFFDLA N +EFP L DKL  K K       G+  GI+G VKGLWGWGG
Sbjct: 516 MQSIPCKPLFFDLAFNMIEFPDLSDKLQEKDK------KGEKGGIAGLVKGLWGWGG 566

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523933|ref|XP_625154.1| PREDICTED: signal recognition particle 68 kDa protein [Apis mellifera]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 6/56 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWG 56
           MQPIP KPLFFDLA N +EFP L +KL  + K       G  AG++GFVKGLWGWG
Sbjct: 525 MQPIPCKPLFFDLAFNMVEFPDLSEKLGDQAK------KGGQAGLTGFVKGLWGWG 574

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021068|ref|XP_003694396.1| PREDICTED: LOW QUALITY PROTEIN: signal recognition particle 68 kDa protein-like [Apis florea]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 6/56 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWG 56
           MQPIP KPLFFDLA N +EFP L +KL  + K       G  AG++GFVKGLWGWG
Sbjct: 525 MQPIPCKPLFFDLAFNMVEFPDLSEKLGDQAK------KGGQAGLTGFVKGLWGWG 574

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865641|ref|XP_003708281.1| PREDICTED: signal recognition particle 68 kDa protein-like [Megachile rotundata]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/56 (62%), Positives = 41/56 (73%), Gaps = 6/56 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWG 56
           MQPIP KPLFFDLA N +EFP L +KL  + K      +GQ AG++GFVKGLWGWG
Sbjct: 526 MQPIPCKPLFFDLAFNMVEFPDLSEKLGDQAKK-----TGQ-AGLTGFVKGLWGWG 575

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291237178|ref|XP_002738515.1| PREDICTED: signal recognition particle 68-like [Saccoglossus kowalevskii]

 Score = 71.6 bits (174), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/58 (63%), Positives = 42/58 (72%), Gaps = 9/58 (15%)

Query: 2   QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGAK 59
           QPIP KPLFFD+A N +EFPSLEDK  V+ K AAGG      G++GFVKG W WGG K
Sbjct: 454 QPIPCKPLFFDIAFNHVEFPSLEDK--VEQKKAAGG------GLTGFVKG-WLWGGKK 502

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|91089191|ref|XP_974448.1| PREDICTED: similar to signal recognition particle 68 kDa protein [Tribolium castaneum] gi|270012460|gb|EFA08908.1| hypothetical protein TcasGA2_TC006613 [Tribolium castaneum]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 39/56 (69%), Gaps = 6/56 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWG 56
           M+PIPAKPLF+DLA N +E P L +KL+   K   G      AGISGFVKGLWGWG
Sbjct: 512 MEPIPAKPLFYDLALNFVELPDLTEKLEGGQKKEKG------AGISGFVKGLWGWG 561

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478017|gb|EFX88975.1| hypothetical protein DAPPUDRAFT_220901 [Daphnia pulex]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 8/59 (13%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWGGAK 59
           M P+P KPLFFDLA N + FPSL + ++ K            AGI+GFVKGLWGWGG K
Sbjct: 548 MAPVPCKPLFFDLALNHISFPSLAENMENK--------KSTGAGITGFVKGLWGWGGKK 598

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350398272|ref|XP_003485143.1| PREDICTED: signal recognition particle 68 kDa protein-like isoform 1 [Bombus impatiens] gi|350398275|ref|XP_003485144.1| PREDICTED: signal recognition particle 68 kDa protein-like isoform 2 [Bombus impatiens]

 Score = 70.9 bits (172), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 38/56 (67%), Gaps = 6/56 (10%)

Query: 1   MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWGWG 56
           MQPI  KPLFFDLA N +EFP L +KL  + K       G  AG++GFVKGLWGWG
Sbjct: 524 MQPISCKPLFFDLAFNMVEFPDLSEKLGNQTK------KGGQAGLTGFVKGLWGWG 573

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	60
FB|FBgn0035947	604	Srp68 "Signal recognition part	0.816	0.081	0.473	2.4e-06
UNIPROTKB|F5H5Y3	526	SRP68 "Signal recognition part	0.516	0.058	0.709	6.8e-06
RGD|1305376	587	Srp68 "signal recognition part	0.516	0.052	0.709	7.9e-06
UNIPROTKB|G3V1U4	589	SRP68 "Signal recognition part	0.516	0.052	0.709	8e-06
UNIPROTKB|F1PI42	618	SRP68 "Signal recognition part	0.516	0.050	0.709	8.5e-06
UNIPROTKB|Q00004	622	SRP68 "Signal recognition part	0.516	0.049	0.709	8.6e-06
UNIPROTKB|A6QQW3	623	SRP68 "Uncharacterized protein	0.516	0.049	0.709	8.6e-06
MGI|MGI:1917447	625	Srp68 "signal recognition part	0.516	0.049	0.709	8.6e-06
UNIPROTKB|Q9UHB9	627	SRP68 "Signal recognition part	0.516	0.049	0.709	8.7e-06
UNIPROTKB|F1RW08	624	SRP68 "Uncharacterized protein	0.516	0.049	0.677	1.1e-05

FB|FBgn0035947 Srp68 "Signal recognition particle protein 68" [Drosophila melanogaster (taxid:7227)]

 Score = 119 (46.9 bits), Expect = 2.4e-06, P = 2.4e-06
 Identities = 27/57 (47%), Positives = 31/57 (54%)

Query:     1 MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKXXXXXXXXXXXXXXXFVKGLWGWGG 57
             M+PIP KP+FFDLA   +E PSLE KL+   K               FVKG  GWGG
Sbjct:   552 MEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGASITG--------FVKGFLGWGG 600

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISS

GO:0008312 "7S RNA binding" evidence=ISS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

UNIPROTKB|F5H5Y3 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   481 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 511

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1305376 Srp68 "signal recognition particle 68" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 7.9e-06, P = 7.9e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   542 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 572

GO:0005047 "signal recognition particle binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

UNIPROTKB|G3V1U4 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 8.0e-06, P = 8.0e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   544 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 574

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1PI42 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 114 (45.2 bits), Expect = 8.5e-06, P = 8.5e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   573 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 603

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|Q00004 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 114 (45.2 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   577 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 607

GO:0005829 "cytosol" evidence=TAS

GO:0005730 "nucleolus" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|A6QQW3 SRP68 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 114 (45.2 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   578 QPIPCKPLFFDLALNHVAFPPLEDKLEQKAK 608

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

MGI|MGI:1917447 Srp68 "signal recognition particle 68" [Mus musculus (taxid:10090)]

 Score = 114 (45.2 bits), Expect = 8.6e-06, P = 8.6e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   580 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 610

GO:0003723 "RNA binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

UNIPROTKB|Q9UHB9 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 114 (45.2 bits), Expect = 8.7e-06, P = 8.7e-06
 Identities = 22/31 (70%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QPIP KPLFFDLA N + FP LEDKL+ K K
Sbjct:   582 QPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 612

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0005047 "signal recognition particle binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1RW08 SRP68 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
 Identities = 21/31 (67%), Positives = 24/31 (77%)

Query:     2 QPIPAKPLFFDLAQNQLEFPSLEDKLDVKIK 32
             QP+P KPLFFDLA N + FP LEDKL+ K K
Sbjct:   579 QPVPCKPLFFDLALNHVAFPPLEDKLEQKTK 609

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSS2	SRP68_DROME	No assigned EC number	0.52	0.7	0.0695	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	60
KOG2460|consensus	593		99.57
PF14804	52	Jag_N: Jag N-terminus; PDB: 3GKU_B.	80.46

>KOG2460|consensus

Probab=99.57  E-value=4.7e-16  Score=119.91  Aligned_cols=54  Identities=46%  Similarity=0.800  Sum_probs=41.0

Q ss_pred             CCccCCCceeeeeccccccCCCCcchhhhccCCCCCCCCCCCCCCCCceeeeee-ecC
Q psy15905          1 MQPIPAKPLFFDLAQNQLEFPSLEDKLDVKIKPAAGGGSGQPAGISGFVKGLWG-WGG   57 (60)
Q Consensus         1 ~~pvp~KPiffDlA~Nyi~yP~~~~~~~~~~~~a~~~~~~~~~g~~~~kkGwFG-fGr   57 (60)
                      |+||||||||||||+|||.||.++++.++.++.....   .+.|..+.++||+| ||+
T Consensus       539 ~~PIP~KPlFFDLA~~yl~~p~~edkleq~~k~~~~t---~~~G~~k~~~Gf~~sf~g  593 (593)
T KOG2460|consen  539 FLPIPCKPLFFDLAFNYLTYPKLEDKLEQVKKSGTET---TPTGEPKKKRGFLSSFGG  593 (593)
T ss_pred             cccCCCcchHHHHHHHhhcCCcccchhhhcCCCcccc---CCccccccchhhhhccCC
Confidence            6899999999999999999999999988653322111   23566777888886 553

>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B

Probab=80.46  E-value=0.46  Score=26.52  Aligned_cols=12  Identities=33%  Similarity=0.645  Sum_probs=1.4

Q ss_pred             ceeeeeeecCCC
Q psy15905         48 FVKGLWGWGGAK   59 (60)
Q Consensus        48 ~kkGwFGfGr~~   59 (60)
                      -++|+||||++.
T Consensus        33 g~kGf~G~g~k~   44 (52)
T PF14804_consen   33 GKKGFFGFGKKP   44 (52)
T ss_dssp             -B--------B-
T ss_pred             CCCcEEeeccee
Confidence            378999999763

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00