Psyllid ID: psy1607

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
Protein Sequence
MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNSGILVQSQ
Secondary Structure (PSIPRED)
cccccccccccccccEEcccEEEcccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccccEEEcccccccEEEEEcccccEEEEEccccEEEEEcccccccccccccccEEcccEEEcccccccccccEEEEEEcccccEEEEEccccEEEEEcccccccccccccccEEEEEEcccccccccccEEEEEcccccEEEEEccccccccccEEEEEccccccEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccccEEcccHHHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccccHHHHHHcccEEEEEEEcccEEEEEEEcccEccccccEEEEEccccccccccc
Coil and Loop (DISEMBL)
mcdhlasgplkmlsqvfhmpsrmdHFLDLVVTDIACGFDHCLALTqegivfswgngsrgqlgypssgtdanmeprEIRALSGLGVVqisaggwhsaartqdgflyawgwnnggqvgvegkldlvvhdphpmswsedfdsqnikvvdvacgsrhtlalcddnslwgcgwneynqlsmgcgvsqvSVMTrlsvpehvkncpiVKLFAEHWNSarlsvpehakdssIVKLFAGhwnsgilvqsq
Flexible Loop (DISEMBL)
MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNsgilvqsq
Low Complexity Region (SEG)
MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNSGILVQSQ
Disordered region (IsUnstruct)
************LSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGS*******************IRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNSGILV***
Disordered Region (DISOPRED)
MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHW*********
Disordered Region (DISEMBL)
MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNSGILVQSQ
Disordered Region (DISPRO)
**************QVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWNSGILVQSQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	241	2.2.26 [Sep-21-2011]
Q9FN03	440	Ultraviolet-B receptor UV	yes	N/A	0.580	0.318	0.382	3e-21
F2Z461	1003	E3 ISG15--protein ligase	yes	N/A	0.647	0.155	0.306	2e-20
Q8IVU3	1022	Probable E3 ubiquitin-pro	yes	N/A	0.634	0.149	0.325	3e-19
Q6PAV2	1057	Probable E3 ubiquitin-pro	no	N/A	0.614	0.140	0.322	5e-18
Q5PQN1	1057	Probable E3 ubiquitin-pro	no	N/A	0.614	0.140	0.322	7e-18
Q8BTU7	377	RCC1 domain-containing pr	no	N/A	0.601	0.384	0.312	7e-18
Q4R828	376	RCC1 domain-containing pr	N/A	N/A	0.597	0.382	0.340	8e-18
Q15751	4861	Probable E3 ubiquitin-pro	no	N/A	0.659	0.032	0.360	2e-17
Q5GLZ8	1057	Probable E3 ubiquitin-pro	no	N/A	0.614	0.140	0.322	2e-17
A6NED2	376	RCC1 domain-containing pr	no	N/A	0.597	0.382	0.318	6e-17

>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1

 Score =  102 bits (253), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/149 (38%), Positives = 86/149 (57%), Gaps = 9/149 (6%)

Query: 29  LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQI 88
           + +  IACG  HCLA+T EG V SWG    GQLG     T+ ++ P++I+A  G+ +  +
Sbjct: 120 IRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLVPQKIQAFEGIRIKMV 177

Query: 89  SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
           +AG  H+AA T+DG LY WGW   G +G+  + D +V +    +  E       K+  VA
Sbjct: 178 AAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-------KMSMVA 230

Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
           CG RHT+++    +L+  GW++Y QL  G
Sbjct: 231 CGWRHTISVSYSGALYTYGWSKYGQLGHG 259

UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)

>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 90/163 (55%), Gaps = 7/163 (4%)

Query: 13  LSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANM 72
             ++  MP+++     + +  ++CG  H LAL+++G VFSWG  S GQLG     + +  
Sbjct: 111 FKEISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGL-GKNSRSQA 169

Query: 73  EPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEG-KLDLVVHDPHPM 131
            P+++++L G+ + Q++AGG HS A +  G  + WG N  GQ+ + G K+   ++ PH +
Sbjct: 170 IPQKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSI 229

Query: 132 SWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
                   +N+ V+ ++CG  HT  L ++  ++  G N   QL
Sbjct: 230 G-----ALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 267

Major E3 ligase for ISG15 conjugation. Acts as a positive regulator of innate antiviral response in cells induced by interferon.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 89/166 (53%), Gaps = 13/166 (7%)

Query: 13  LSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLG----YPSSGT 68
             ++   P ++    D+ +  ++CG  H LAL+++  VFSWG  S GQLG    +PS  +
Sbjct: 112 FKEISFTPKKIMTLNDIKIIQVSCGHYHSLALSKDSQVFSWGKNSHGQLGLGKEFPSQAS 171

Query: 69  DANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDP 128
                P+ +R+L G+ + Q++AGG HS A +  G  + WG N+ GQ+ + G+ ++ V   
Sbjct: 172 -----PQRVRSLEGIPLAQVAAGGAHSFALSLCGTSFGWGSNSAGQLALSGR-NVPVQSN 225

Query: 129 HPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
            P+S       +N+ VV ++CG  HT  L  D  ++  G N   QL
Sbjct: 226 KPLSVGA---LKNLGVVYISCGDAHTAVLTQDGKVFTFGDNRSGQL 268

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2

 Score = 91.3 bits (225), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P R D F++  V D+ CG  H + +  +G V++ G    GQLG+  S      +P ++ A
Sbjct: 25  PRRSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKS----RKKPEQVVA 80

Query: 80  LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
           L    +V ++ G  H+ A    G +YAWG ++ GQ+G++G  + +    +  S S+    
Sbjct: 81  LDAQNIVAVACGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSD---- 136

Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
             I++V VACG  H+LAL   + ++  G N+Y QL +G
Sbjct: 137 --IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLG 172

Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 85/158 (53%), Gaps = 10/158 (6%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P + D F++  V D+ CG  H + +  +G V++ G    GQLG+  S      +P ++ A
Sbjct: 25  PRKSDFFVNKKVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKS----RKKPEQVVA 80

Query: 80  LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
           L    +V +S G  H+ A    G +YAWG ++ GQ+G++G  + +    +  S S+    
Sbjct: 81  LDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLQGSEECIRVPRNIKSLSD---- 136

Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
             I++V VACG  H+LAL   + ++  G N+Y QL +G
Sbjct: 137 --IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLG 172

Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8BTU7|RCCD1_MOUSE RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2

 Score = 90.9 bits (224), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 81/176 (46%), Gaps = 31/176 (17%)

Query: 28  DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
           +L V  +  G +H L L   G VFSWG G  GQLG+ +   +A +EPR + AL GL + +
Sbjct: 160 ELRVRQLELGAEHVLLLCAAGQVFSWGAGRHGQLGHGT--LEAELEPRLLEALQGLRMAK 217

Query: 88  ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGK--LDLVVHDPHPMSWSEDFDSQNIKVV 145
           ++AGGWHS   ++ G +Y WGWN  GQ+ +  +   +           +ED   + + V 
Sbjct: 218 VAAGGWHSVCLSETGDIYIWGWNESGQLALPTRSGTENKAEREEATELNEDGLKEELAVA 277

Query: 146 D---------------------------VACGSRHTLALCDDNSLWGCGWNEYNQL 174
           D                            +CGSRHT  +     L+  GW +Y QL
Sbjct: 278 DAGAPAHFIAIQPFPALLDLPLGSDAVMASCGSRHTAVVTRTGELYTWGWGKYGQL 333

Mus musculus (taxid: 10090)

>sp|Q4R828|RCCD1_MACFA RCC1 domain-containing protein 1 OS=Macaca fascicularis GN=RCCD1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 83/179 (46%), Gaps = 35/179 (19%)

Query: 28  DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT-DANMEPREIRALSGLGVV 86
           +L    +  G +H L L   G VFSWG G  GQLG+   GT +A +EPR + AL GL + 
Sbjct: 157 ELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGH---GTLEAELEPRLLEALQGLTMA 213

Query: 87  QISAGGWHSAARTQDGFLYAWGWNNGGQV------------------------GVEGKLD 122
           +++AGGWHS   ++ G +Y WGWN  GQ+                        G + K  
Sbjct: 214 EVAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREATGLNEDGSQVKRT 273

Query: 123 LVVHD--PHPMSWSEDFDS-----QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
             V D  P P    + F +          V V+CGSRHT  +     L+  GW +Y QL
Sbjct: 274 GRVEDGAPAPFIAVQPFPALLDLPLGSDAVKVSCGSRHTAVVTRTGELYTWGWGKYGQL 332

Macaca fascicularis (taxid: 9541)

>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/172 (36%), Positives = 95/172 (55%), Gaps = 13/172 (7%)

Query: 17   FHMPSRMDHFLDLVVTDI--ACGFD-HCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
             H+ + +      VVT +  +CG D H +ALT+ G VFSWG+G  G+LG+ +S  D    
Sbjct: 4067 LHVLTVISALQGFVVTQLVTSCGSDGHSMALTESGEVFSWGDGDYGKLGHGNS--DRQRR 4124

Query: 74   PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
            PR+I AL G  VVQ+S G  HSA  T DG L+ +G  + G++G+    +  +  P  ++ 
Sbjct: 4125 PRQIEALQGEEVVQMSCGFKHSAVVTSDGKLFTFGNGDYGRLGLGNTSNKKL--PERVTA 4182

Query: 134  SEDFDSQNIKVVDVACGSRHTLALCDDNSL-WGCGWNEYNQLSMGCGVSQVS 184
             E +     ++  VACG  HTLA+  D S+ W  G  +Y +L +G   ++ S
Sbjct: 4183 LEGY-----QIGQVACGLNHTLAVSADGSMVWAFGDGDYGKLGLGNSTAKSS 4229

Involved in membrane trafficking via some guanine nucleotide exchange factor (GEF) activity and its ability to bind clathrin. Acts as a GEF for Arf and Rab, by exchanging bound GDP for free GTP. Binds phosphatidylinositol 4,5-bisphosphate, which is required for GEF activity. May also act as a E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1

 Score = 89.7 bits (221), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 51/158 (32%), Positives = 84/158 (53%), Gaps = 10/158 (6%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P + D F++  V D+ CG  H + +  +G V++ G    GQLG+  S      +P ++ A
Sbjct: 25  PRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHEKS----RKKPEQVVA 80

Query: 80  LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
           L    +V +S G  H+ A    G +YAWG ++ GQ+G+ G  + +    +  S S+    
Sbjct: 81  LDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSD---- 136

Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
             I++V VACG  H+LAL   + ++  G N+Y QL +G
Sbjct: 137 --IQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLG 172

Probable E3 ubiquitin-protein ligase involved in either protein trafficking or in the distribution of cellular structures. Required for spermatozoon maturation and fertility, and for the removal of the cytoplasmic droplet of the spermatozoon. E3 ubiquitin-protein ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer it to targeted substrates.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A6NED2|RCCD1_HUMAN RCC1 domain-containing protein 1 OS=Homo sapiens GN=RCCD1 PE=1 SV=1

 Score = 87.8 bits (216), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 82/179 (45%), Gaps = 35/179 (19%)

Query: 28  DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT-DANMEPREIRALSGLGVV 86
           +L    +  G +H L L   G VFSWG G  GQLG+   GT +A +EPR + AL GL + 
Sbjct: 157 ELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGH---GTLEAELEPRLLEALQGLVMA 213

Query: 87  QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKL-----DLVVHD-------------- 127
           +++AGGWHS   ++ G +Y WGWN  GQ+ +  +      + V  +              
Sbjct: 214 EVAAGGWHSVCVSETGDIYIWGWNESGQLALPTRNLAEDGETVAREATELNEDGSQVKRT 273

Query: 128 -------PHPMSWSEDFDS-----QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
                  P P    + F +          V  +CGSRHT  +     L+  GW +Y QL
Sbjct: 274 GGAEDGAPAPFIAVQPFPALLDLPMGSDAVKASCGSRHTAVVTRTGELYTWGWGKYGQL 332

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
345490923	346	PREDICTED: E3 ubiquitin-protein ligase H	0.813	0.566	0.394	7e-30
307172226	344	RCC1 domain-containing protein 1 [Campon	0.676	0.473	0.433	4e-29
242011327	357	uvb-resistance protein uvr8, putative [P	0.668	0.450	0.424	1e-28
332018112	345	RCC1 domain-containing protein 1 [Acromy	0.676	0.472	0.433	2e-28
340725486	347	PREDICTED: RCC1 domain-containing protei	0.751	0.521	0.4	6e-28
307214559	346	Probable E3 ubiquitin-protein ligase HER	0.676	0.471	0.445	1e-27
350415154	347	PREDICTED: E3 ubiquitin-protein ligase H	0.751	0.521	0.394	2e-27
328783317	345	PREDICTED: probable E3 ubiquitin-protein	0.676	0.472	0.403	2e-27
328714818	371	PREDICTED: RCC1 domain-containing protei	0.796	0.517	0.342	3e-26
357601928	375	hypothetical protein KGM_14591 [Danaus p	0.593	0.381	0.435	4e-26

>gi|345490923|ref|XP_003426495.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Nasonia vitripennis]

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 113/203 (55%), Gaps = 7/203 (3%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L QVF++P  ++    L+  D+ACG+DH L L ++G V+S G G+RGQLG+     +
Sbjct: 145 LTNLGQVFNIPISLNDPESLIFIDVACGYDHTLLLAKDGGVYSVGMGTRGQLGH--GDLE 202

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
              EP+ I AL+GL +VQIS+GGWHSA  T  G LY WGWNN GQ+G    ++ VV  P 
Sbjct: 203 DCDEPKLIEALAGLKIVQISSGGWHSAVVTDQGDLYTWGWNNQGQLG-HPDVENVVAVPK 261

Query: 130 PMSW-SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGC-GVSQVSVMT 187
            + +  E  ++  I +    CGS  T+ + D + LWGCG N+Y QL +     + V    
Sbjct: 262 IVDFIDETEETVEINIKKAQCGSAFTICMTDSDKLWGCGSNKYGQLGLPREAFTSVKKFV 321

Query: 188 RLSVPEHVKNCPIVKLFAEHWNS 210
            + +P   K  PI       W S
Sbjct: 322 AIKLPNIEK--PIRDFKCREWGS 342

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172226|gb|EFN63743.1| RCC1 domain-containing protein 1 [Camponotus floridanus]

 Score =  134 bits (337), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 99/166 (59%), Gaps = 3/166 (1%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L +VF+ P  +     +   D+ CG+DH + L + G V+S G G RGQLG+  +  +
Sbjct: 140 LTNLGRVFNAPLLVQMPKRVKFVDLVCGYDHTILLAENGDVYSMGMGIRGQLGH--NELE 197

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
              +P+ I AL+GL +VQISAGGWHSAA T  G LY WGWN+ G++G+E K   V   P 
Sbjct: 198 NCDDPKLIEALAGLKIVQISAGGWHSAAVTDQGDLYTWGWNSNGELGIESKDKKVYAVPT 257

Query: 130 PMSWSEDF-DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
            + +  D  ++  I V  V CG+  T+ L DD S WGCG N+Y QL
Sbjct: 258 LVDFKNDRGETIEINVKKVECGNSFTICLTDDGSFWGCGTNKYGQL 303

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011327|ref|XP_002426404.1| uvb-resistance protein uvr8, putative [Pediculus humanus corporis] gi|212510503|gb|EEB13666.1| uvb-resistance protein uvr8, putative [Pediculus humanus corporis]

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/165 (42%), Positives = 100/165 (60%), Gaps = 4/165 (2%)

Query: 33  DIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANM-EPREIRALSGLGVVQISAG 91
           ++  G +H L LT+ G V S+GNGSRGQLG   +GT  ++ +P +I AL GL V+ I+AG
Sbjct: 175 NVVSGLEHSLILTESGCVLSFGNGSRGQLG---NGTLNSIDQPSQIPALEGLKVINIAAG 231

Query: 92  GWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGS 151
            WHS A T  G L  WGWNN GQ+      + +     P+      + +NIKVVDV+CGS
Sbjct: 232 NWHSFAITDSGDLCGWGWNNYGQLATFEDDEEITLAAEPIFVEIITEEENIKVVDVSCGS 291

Query: 152 RHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
           RHT+A  D+  L+G GWN Y QL +   + + +  T++S+  + K
Sbjct: 292 RHTIAKIDNGDLYGTGWNVYRQLGINSDLEKTTKFTKVSLINNQK 336

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018112|gb|EGI58726.1| RCC1 domain-containing protein 1 [Acromyrmex echinatior]

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 72/166 (43%), Positives = 96/166 (57%), Gaps = 3/166 (1%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L +VF+ P  ++    +   D+ CGFDH + L + G V+S G G RGQLG+      
Sbjct: 140 LTNLGRVFNAPLLVEIPKRVKFVDLTCGFDHTILLAENGDVYSMGMGIRGQLGHNELENC 199

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
            N  P+ I AL+GL VVQISAGGWH+A  T  G LY WGWN+ G++G+E K   V   P 
Sbjct: 200 DN--PKLIEALAGLKVVQISAGGWHTAVVTDQGDLYTWGWNSNGELGIENKDKKVYAVPT 257

Query: 130 PMSWSEDF-DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
            + +  D  ++  I V  V CG+  T+ L DD   WGCG N+Y QL
Sbjct: 258 LIDFKNDRGENIEINVKKVECGNSFTICLTDDGFFWGCGTNKYGQL 303

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340725486|ref|XP_003401100.1| PREDICTED: RCC1 domain-containing protein 1-like isoform 1 [Bombus terrestris] gi|340725488|ref|XP_003401101.1| PREDICTED: RCC1 domain-containing protein 1-like isoform 2 [Bombus terrestris]

 Score =  130 bits (326), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 74/185 (40%), Positives = 103/185 (55%), Gaps = 4/185 (2%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L + F++P  +D    +   DIA GFDH + L + G V+S G G+RGQLG+      
Sbjct: 144 LTNLGRAFNVPILIDIPKRVRFIDIAGGFDHTILLAENGDVYSMGMGTRGQLGHNDLEDC 203

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
            N  PR + AL+G+ V QISA GWH+A  T  G LY WGWN  G++G+  +   VV  P 
Sbjct: 204 DN--PRIVDALAGIRVTQISAAGWHTAVVTDQGDLYMWGWNTNGELGLTKQESKVVATPT 261

Query: 130 PMSWSEDFDSQ-NIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGC-GVSQVSVMT 187
            + ++ D D    + V  V CG+  T+ + DD +LWGCG N+Y QL      +S  S   
Sbjct: 262 LIDFTNDQDENIEVSVKKVQCGNTFTICMTDDGTLWGCGCNKYGQLGQSPEKLSSSSKFV 321

Query: 188 RLSVP 192
           +L VP
Sbjct: 322 KLDVP 326

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214559|gb|EFN89544.1| Probable E3 ubiquitin-protein ligase HERC2 [Harpegnathos saltator]

 Score =  129 bits (324), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/166 (44%), Positives = 95/166 (57%), Gaps = 3/166 (1%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L +VF+ P  ++    +   DIA GFDH + L + G V+S G G+RGQLG+      
Sbjct: 142 LTNLGRVFNAPVLVEVPKRVKFVDIASGFDHTILLAENGDVYSMGMGTRGQLGHNDLEDC 201

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
            N  PR I AL+GL +VQISAGGWHSA  T  G LY WGWN  G++G E K   V   P 
Sbjct: 202 DN--PRLIEALAGLRIVQISAGGWHSAVVTDQGDLYTWGWNTSGELGTESKDTKVHAVPT 259

Query: 130 PMSW-SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
            +   S + +   + V  V CG+  T+ L DD S WGCG N+Y QL
Sbjct: 260 LIDLKSNEGEDTEVNVKSVECGNSFTICLSDDGSFWGCGNNKYGQL 305

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415154|ref|XP_003490550.1| PREDICTED: E3 ubiquitin-protein ligase HERC2-like [Bombus impatiens]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 73/185 (39%), Positives = 103/185 (55%), Gaps = 4/185 (2%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L + F++P  +D    +   DIA GFDH + L + G ++S G G+RGQLG+      
Sbjct: 144 LTNLGRAFNVPILIDIPKRVRFIDIAGGFDHTILLAENGDIYSMGMGTRGQLGHNDLEDC 203

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
            N  PR + AL+G+ V QISA GWH+A  T  G LY WGWN  G++G+  +   VV  P 
Sbjct: 204 DN--PRIVDALAGIKVTQISAAGWHTAVVTDQGDLYMWGWNTHGELGLTKQESKVVATPT 261

Query: 130 PMSWSEDFDSQ-NIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGC-GVSQVSVMT 187
            + ++ D D    + V  V CG+  T+ + DD +LWGCG N+Y QL      +S  S   
Sbjct: 262 LVDFTNDQDENIEVSVKKVQCGNTFTICMTDDGTLWGCGCNKYGQLGQSPEKLSSSSKFI 321

Query: 188 RLSVP 192
           +L VP
Sbjct: 322 KLDVP 326

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328783317|ref|XP_394080.3| PREDICTED: probable E3 ubiquitin-protein ligase HERC4-like [Apis mellifera]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/166 (40%), Positives = 98/166 (59%), Gaps = 3/166 (1%)

Query: 10  LKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD 69
           L  L +VF++P+ +D    +   DIACGFDH + L + G ++S G G+RGQLG+      
Sbjct: 142 LTNLGRVFNIPTLIDIPKRVRFIDIACGFDHTILLAENGDLYSMGMGTRGQLGHNDLEDC 201

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
            N  P+ + AL+G+ V QISA GWHSA  T  G LY WGWN  G++G+  +   V+  P 
Sbjct: 202 DN--PKLVEALAGIKVTQISAAGWHSAVVTNQGDLYTWGWNTNGELGLTDQESKVIAVPT 259

Query: 130 PMSWSEDF-DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
            + ++ D  +S  I V    CG+  T+ + +D + WGCG N+Y QL
Sbjct: 260 LIDFTNDKNESVEIFVEKAQCGNTFTICMTNDGTFWGCGCNKYGQL 305

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328714818|ref|XP_003245463.1| PREDICTED: RCC1 domain-containing protein 1-like [Acyrthosiphon pisum]

 Score =  124 bits (312), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/207 (34%), Positives = 115/207 (55%), Gaps = 15/207 (7%)

Query: 14  SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
           ++++ +P+++       VT + CGF+H + L + G +++ G+ SRGQLG+     +    
Sbjct: 170 NEIYSIPTKIFDS-KFKVTQVVCGFEHIVILMETGCLYTQGSSSRGQLGHGELIEED--Y 226

Query: 74  PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDL--VVHDPHP- 130
           PR +++L G+ V+  SAGGWH+AA T+   LY WGWN+ GQ+G+    +   ++  P P 
Sbjct: 227 PRLLKSLDGIRVINTSAGGWHTAAITEYNDLYMWGWNHSGQLGISNSPESGGIIMAPEPV 286

Query: 131 -MSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRL 189
            ++W E+ D     +  V+ G+RH++ L  +N LWGCGWN + QL +         M  L
Sbjct: 287 LINWPEETD-----IEQVSLGARHSMVLSKNNILWGCGWNAHKQLGIETYQLTCDRMINL 341

Query: 190 SVPEHVKNC---PIVKLFAEHWNSARL 213
           S    +  C    IVK+    WNSA L
Sbjct: 342 SNLSPLLKCNVRKIVKVVCGAWNSALL 368

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357601928|gb|EHJ63196.1| hypothetical protein KGM_14591 [Danaus plexippus]

 Score =  124 bits (311), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/154 (43%), Positives = 94/154 (61%), Gaps = 11/154 (7%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME-PREIRALSGLGVVQIS 89
           V DI CG++H + LT EG V++WGNG R QLG+   G   N+E P E+ AL+G+ +V+I 
Sbjct: 187 VCDIVCGYEHYMLLTDEGRVYTWGNGRRLQLGH---GDLTNLELPTEVEALAGIKIVKIR 243

Query: 90  AGGWHSAARTQDGFLYAWGWNNGGQVGVEGK-------LDLVVHDPHPMSWSEDFDSQNI 142
           AGGWHS A +  G LY WGWN+ GQ+G+E K       L           + E+    ++
Sbjct: 244 AGGWHSLALSDCGDLYLWGWNDTGQLGMENKGGQEKKGLKNYTLPTLVDVYDENDQLVDL 303

Query: 143 KVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSM 176
            V D+ACG+RHT  L +DN++W  G N+Y QL +
Sbjct: 304 CVKDIACGTRHTALLLEDNTVWTSGCNKYGQLGL 337

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	241
UNIPROTKB|E2R5W9	313	RCCD1 "Uncharacterized protein	0.340	0.261	0.464	1.9e-24
TAIR|locus:2163986	440	UVR8 "UVB-RESISTANCE 8" [Arabi	0.572	0.313	0.387	6.3e-24
UNIPROTKB|E1B8U7	377	RCCD1 "Uncharacterized protein	0.336	0.214	0.470	2.9e-23
UNIPROTKB|G3V2I3	374	RCCD1 "RCC1 domain-containing	0.360	0.232	0.439	8.1e-23
UNIPROTKB|A6NED2	376	RCCD1 "RCC1 domain-containing	0.360	0.231	0.439	8.5e-23
UNIPROTKB|F1RMH6	382	RCCD1 "Uncharacterized protein	0.473	0.298	0.376	1.3e-22
MGI|MGI:1914388	1003	Herc6 "hect domain and RLD 6"	0.639	0.153	0.310	1.1e-21
TAIR|locus:2146142	396	AT5G16040 "AT5G16040" [Arabido	0.547	0.333	0.368	2.6e-20
UNIPROTKB|F1N7C1	1016	HERC6 "Uncharacterized protein	0.626	0.148	0.333	6.2e-20
UNIPROTKB|F1PBB3	1018	HERC6 "Uncharacterized protein	0.626	0.148	0.339	2.7e-19

UNIPROTKB|E2R5W9 RCCD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 216 (81.1 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 39/84 (46%), Positives = 53/84 (63%)

Query:    37 GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSA 96
             G +H L L + G VFSWG G  GQLG+ S   +A  EPR + AL GL V +++AGGWHS 
Sbjct:   103 GAEHALLLDEAGQVFSWGQGRHGQLGHGS--LEAEPEPRLLEALQGLPVAEVAAGGWHSV 160

Query:    97 ARTQDGFLYAWGWNNGGQVGVEGK 120
               ++ G +Y WGWN  GQ+ +  +
Sbjct:   161 CVSETGDIYIWGWNESGQLALPSR 184

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 277 (102.6 bits), Expect = 6.3e-24, P = 6.3e-24
 Identities = 57/147 (38%), Positives = 85/147 (57%)

Query:    31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
             +  IACG  HCLA+T EG V SWG    GQLG     T+ ++ P++I+A  G+ +  ++A
Sbjct:   122 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL--GDTEDSLVPQKIQAFEGIRIKMVAA 179

Query:    91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
             G  H+AA T+DG LY WGW   G +G+  + D +V +    +  E       K+  VACG
Sbjct:   180 GAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTGGE-------KMSMVACG 232

Query:   151 SRHTLALCDDNSLWGCGWNEYNQLSMG 177
              RHT+++    +L+  GW++Y QL  G
Sbjct:   233 WRHTISVSYSGALYTYGWSKYGQLGHG 259

GO:0005737 "cytoplasm" evidence=ISM

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0009411 "response to UV" evidence=IMP

GO:0003682 "chromatin binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0010224 "response to UV-B" evidence=IEP;IGI

GO:0000785 "chromatin" evidence=IDA

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0042803 "protein homodimerization activity" evidence=IDA

UNIPROTKB|E1B8U7 RCCD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 209 (78.6 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
 Identities = 40/85 (47%), Positives = 53/85 (62%)

Query:    37 GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT-DANMEPREIRALSGLGVVQISAGGWHS 95
             G +H L L   G VFSWG G  GQLG+   GT +A  EPR + AL GL + +++AGGWHS
Sbjct:   167 GAEHALLLDAAGQVFSWGAGRHGQLGH---GTLEAEPEPRLLEALQGLRMAEVAAGGWHS 223

Query:    96 AARTQDGFLYAWGWNNGGQVGVEGK 120
                ++ G +Y WGWN  GQ+ +  K
Sbjct:   224 VCLSETGDIYIWGWNESGQLALPTK 248

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G3V2I3 RCCD1 "RCC1 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query:    28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT-DANMEPREIRALSGLGVV 86
             +L    +  G +H L L   G VFSWG G  GQLG+   GT +A +EPR + AL GL + 
Sbjct:   157 ELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGH---GTLEAELEPRLLEALQGLVMA 213

Query:    87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGV 117
             +++AGGWHS   ++ G +Y WGWN  GQ+ +
Sbjct:   214 EVAAGGWHSVCVSETGDIYIWGWNESGQLAL 244

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|A6NED2 RCCD1 "RCC1 domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 8.5e-23, Sum P(2) = 8.5e-23
 Identities = 40/91 (43%), Positives = 56/91 (61%)

Query:    28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT-DANMEPREIRALSGLGVV 86
             +L    +  G +H L L   G VFSWG G  GQLG+   GT +A +EPR + AL GL + 
Sbjct:   157 ELRARQLELGAEHALLLDAAGQVFSWGGGRHGQLGH---GTLEAELEPRLLEALQGLVMA 213

Query:    87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGV 117
             +++AGGWHS   ++ G +Y WGWN  GQ+ +
Sbjct:   214 EVAAGGWHSVCVSETGDIYIWGWNESGQLAL 244

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1RMH6 RCCD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 212 (79.7 bits), Expect = 1.3e-22, Sum P(2) = 1.3e-22
 Identities = 47/125 (37%), Positives = 68/125 (54%)

Query:     3 DHLASGPLKML--SQVFHMPSRMDHFLDLVVT----DIACGFDHCLALTQEGIVFSWGNG 56
             D   +GPL +L  +  +  P +   +  L  T     +  G +H L L   G VFSWG G
Sbjct:   133 DETQAGPLPLLPCASAYVSP-QPPFYRPLAPTLRARRLELGAEHALLLDAAGQVFSWGGG 191

Query:    57 SRGQLGYPSSGT-DANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQV 115
               GQLG+   GT +A  EPR + AL GL + +++AGGWHS   ++ G +Y WGWN  GQ+
Sbjct:   192 RHGQLGH---GTLEAEREPRVLEALQGLPMAEVAAGGWHSVCVSETGDIYIWGWNESGQL 248

Query:   116 GVEGK 120
              +  +
Sbjct:   249 ALPAR 253

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1914388 Herc6 "hect domain and RLD 6" [Mus musculus (taxid:10090)]

 Score = 255 (94.8 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
 Identities = 50/161 (31%), Positives = 90/161 (55%)

Query:    15 QVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEP 74
             ++  MP+++     + +  ++CG  H LAL+++G VFSWG  S GQLG   +     + P
Sbjct:   113 EISFMPTKIKALAGIKIIQVSCGHYHSLALSEDGHVFSWGRNSEGQLGLGKNSRSQAI-P 171

Query:    75 REIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEG-KLDLVVHDPHPMSW 133
             +++++L G+ + Q++AGG HS A +  G  + WG N  GQ+ + G K+   ++ PH +  
Sbjct:   172 QKVKSLEGIPLAQVAAGGTHSFALSLTGTSFGWGSNRSGQLALSGNKVKEQIYKPHSIG- 230

Query:   134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
                   +N+ V+ ++CG  HT  L ++  ++  G N   QL
Sbjct:   231 ----ALKNLSVIYISCGYEHTAVLTEEGQVFTFGGNSSGQL 267

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=ISO;IBA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0030332 "cyclin binding" evidence=ISO

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0045087 "innate immune response" evidence=IEA

TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 2.6e-20, P = 2.6e-20
 Identities = 52/141 (36%), Positives = 81/141 (57%)

Query:    28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
             DL + DIA G  H  ALT EG V+ WG G  G+LG+  +   + M P+++  L+G  ++Q
Sbjct:   247 DLTLVDIAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQ 306

Query:    88 ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGK------LDLVVHDPHP---MSWSEDFD 138
             +S GG HS A T+DG ++++G  + G++G   K      L+L +H P P    + +++ D
Sbjct:   307 VSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIHIPPPEGRFNHTDEED 366

Query:   139 SQNIKVVDVACGSRHTLALCD 159
                     VACG RHTLA+ +
Sbjct:   367 DGKWIAKHVACGGRHTLAIVE 387

GO:0003682 "chromatin binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008536 "Ran GTPase binding" evidence=ISS

UNIPROTKB|F1N7C1 HERC6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 249 (92.7 bits), Expect = 6.2e-20, P = 6.2e-20
 Identities = 52/156 (33%), Positives = 84/156 (53%)

Query:    19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
             +P ++     + +  +ACG  H +AL+++G VFSWG  S GQLG       +   P+ +R
Sbjct:   118 IPKKIKTLAGIKIIQVACGHYHSVALSEDGQVFSWGTNSHGQLGLGKE-FPSQASPQRVR 176

Query:    79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
             +L G+ + Q++AGG HS A +  G  + WG N+ GQ+ + G  +  V    P+S      
Sbjct:   177 SLEGIPLAQVAAGGHHSFALSLSGTSFGWGSNSAGQLALSGN-NAPVQRYKPVSIGA--- 232

Query:   139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
              + + VV ++CG +HT  L  D  ++  G N Y QL
Sbjct:   233 LKTLGVVSISCGYKHTAVLTQDGKVFTFGDNSYGQL 268

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|F1PBB3 HERC6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 2.7e-19, P = 2.7e-19
 Identities = 53/156 (33%), Positives = 86/156 (55%)

Query:    19 MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
             +P ++    D+ +  ++CG  H LAL++ G VFSWG+ S GQLG       +   P+ +R
Sbjct:   119 IPMKIKTLNDIKIKQVSCGHYHSLALSEGGQVFSWGSNSDGQLGLGKK-FPSQASPQRVR 177

Query:    79 ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
             +L G+ + Q++AGG HS A +  G  + WG NN GQ+ +  K ++      P S S    
Sbjct:   178 SLDGIPLAQVAAGGAHSFALSLSGTSFGWGRNNAGQLALH-KNNVSGQSYKPYSISA--- 233

Query:   139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
              +N+ V+ ++CG  HT+ L  +  ++  G N Y QL
Sbjct:   234 LKNLGVIYISCGYEHTVVLTQNGKVFTFGDNTYGQL 269

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	241
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	3e-24
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	3e-20
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	9e-19
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	4e-16
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	7e-14
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	4e-13
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	4e-10
COG5184	476	COG5184, ATS1, Alpha-tubulin suppressor and relate	4e-09
pfam00415	50	pfam00415, RCC1, Regulator of chromosome condensat	3e-08
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	3e-08
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	2e-07
pfam13540	30	pfam13540, RCC1_2, Regulator of chromosome condens	3e-07

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score =   99 bits (249), Expect = 3e-24
 Identities = 54/209 (25%), Positives = 84/209 (40%), Gaps = 20/209 (9%)

Query: 28  DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
              +  +A G DH +ALT EG V+ WG+  +GQLG P+S     +        +   +  
Sbjct: 230 KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTS-ERLKLVVLVGDPFAIRNIKY 288

Query: 88  ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV 147
           ++ G  HS A  +DG +YAWG N  GQ+G     ++      P ++ +      I    +
Sbjct: 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKP-NYKQLLSGVTICS--I 345

Query: 148 ACGSRHTLALCDDNSLWGCGWNEYNQLSMG-CGVSQVSVMTRLSVPEHVKNCPIVKLFAE 206
           + G  H+L L  D +L+  G  +  QL +       VS  T+LSV   +          E
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKL----------E 395

Query: 207 HWNSARLSVPEHAKDSSIVKLFAGHWNSG 235
                         D S+       W  G
Sbjct: 396 QVACGTHHNIARTDDGSVYS-----WGWG 419

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 88.7 bits (220), Expect = 3e-20
 Identities = 53/147 (36%), Positives = 79/147 (53%), Gaps = 11/147 (7%)

Query: 34  IACGFDHCLALTQEGIVFSWGNGSRGQLG---YPSSGTDANMEPREIRALSGLGVVQISA 90
           +ACG DH LAL ++G +++WG    GQLG       G        + + LSG+ +  ISA
Sbjct: 289 VACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK-QLLSGVTICSISA 347

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           G  HS    +DG LYA+G  + GQ+G++ ++ + V  P  +S         IK+  VACG
Sbjct: 348 GESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVSTPTKLS-------VAIKLEQVACG 400

Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMG 177
           + H +A  DD S++  GW E+  L  G
Sbjct: 401 THHNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 84.1 bits (208), Expect = 9e-19
 Identities = 60/206 (29%), Positives = 96/206 (46%), Gaps = 13/206 (6%)

Query: 17  FHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQL--GYPSSGTDANMEP 74
           F +P        L V  +ACG++  + LT +G V+SWG    G+L  G   +    +++ 
Sbjct: 164 FKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQF 223

Query: 75  REIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVG--VEGKLDLVVHDPHPMS 132
             ++ +    +VQ++AG  H  A T +G +Y WG N  GQ+G     +L LVV    P  
Sbjct: 224 TPLK-VPKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDP-- 280

Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVP 192
               F  +NIK   VACG  H+LAL +D  ++  G N + QL  G      ++ T+ +  
Sbjct: 281 ----FAIRNIK--YVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334

Query: 193 EHVKNCPIVKLFAEHWNSARLSVPEH 218
           + +    I  + A   +S  L     
Sbjct: 335 QLLSGVTICSISAGESHSLILRKDGT 360

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 76.8 bits (189), Expect = 4e-16
 Identities = 34/130 (26%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P+       + +  I+ G  H L L ++G ++++G G RGQLG      +  ++      
Sbjct: 331 PNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQ---EEITIDVSTPTK 387

Query: 80  LSGLG-VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
           LS    + Q++ G  H+ ART DG +Y+WGW   G +G   K   V      +       
Sbjct: 388 LSVAIKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADV--LVPTLIRQPLLS 445

Query: 139 SQNIKVVDVA 148
             NI +    
Sbjct: 446 GHNIILAGYG 455

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 69.9 bits (171), Expect = 7e-14
 Identities = 43/162 (26%), Positives = 68/162 (41%), Gaps = 22/162 (13%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT------------DANME----- 73
           +  IACG +H L L  +G ++SWG+   G LG                  D  +E     
Sbjct: 106 IIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFK 165

Query: 74  -PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
            P    A S L VV+++ G   S   T DG +Y+WG    G+   +G            +
Sbjct: 166 VPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGE-LGQGSYKNSQKTSIQFT 224

Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
             +        +V +A G+ H +AL ++  ++G G N+  QL
Sbjct: 225 PLKVPKK---AIVQLAAGADHLIALTNEGKVYGWGSNQKGQL 263

Length = 476

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 67.6 bits (165), Expect = 4e-13
 Identities = 33/142 (23%), Positives = 61/142 (42%), Gaps = 14/142 (9%)

Query: 40  HCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPRE-IRALSGLGVVQISAGGWHSAAR 98
           H   L +   V+SWG+    +LG  +  T  +         +    +++I+ GG HS   
Sbjct: 60  HTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGL 119

Query: 99  TQDGFLYAWGWNNGGQVGVEGKLDL-------VVHDPHPMSWS------EDFDSQNIKVV 145
             DG LY+WG N+ G +G +   D+       +  D + +  +            +++VV
Sbjct: 120 DHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVV 179

Query: 146 DVACGSRHTLALCDDNSLWGCG 167
            +ACG   ++ L  D  ++  G
Sbjct: 180 KLACGWEISVILTADGRVYSWG 201

Length = 476

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 53.7 bits (130), Expect = 4e-10
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 47 EGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAA 97
          +G V++WG    GQLG      +  + P+ +  LSG+ VVQ++ G  H+ A
Sbjct: 1  DGRVYTWGRNEYGQLGLGD--EEDVLVPQLVEGLSGVRVVQVACGASHTVA 49

Length = 50

>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

 Score = 56.0 bits (135), Expect = 4e-09
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 4/82 (4%)

Query: 94  HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH 153
           H+    +   +Y+WG N   ++G+ G  +  V  P    +          ++ +ACG  H
Sbjct: 60  HTHLLVKMASVYSWGSNGMNELGL-GNDETKVDRPQLNPF---GRIDKASIIKIACGGNH 115

Query: 154 TLALCDDNSLWGCGWNEYNQLS 175
           +L L  D +L+  G N+   L 
Sbjct: 116 SLGLDHDGNLYSWGDNDDGALG 137

Length = 476

>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 7/57 (12%)

Query: 101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLAL 157
           DG +Y WG N  GQ+G+  + D++V  P  +          ++VV VACG+ HT+AL
Sbjct: 1   DGRVYTWGRNEYGQLGLGDEEDVLV--PQLVEGLS-----GVRVVQVACGASHTVAL 50

Length = 50

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 48.3 bits (116), Expect = 3e-08
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQ 173
           VV +A G  HTLAL  D +++  G N Y Q
Sbjct: 1   VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30

Length = 30

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 16/30 (53%), Positives = 19/30 (63%)

Query: 31 VTDIACGFDHCLALTQEGIVFSWGNGSRGQ 60
          V  IA G  H LALT +G V+ WG+ S GQ
Sbjct: 1  VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30

Length = 30

>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat

 Score = 45.2 bits (108), Expect = 3e-07
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 85  VVQISAGGWHSAARTQDGFLYAWGWNNGGQ 114
           VV I+AG +H+ A T DG +Y WG N+ GQ
Sbjct: 1   VVSIAAGDYHTLALTSDGTVYCWGDNSYGQ 30

Length = 30

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	241
KOG1427|consensus	443		100.0
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	99.97
KOG1427|consensus	443		99.96
COG5184	476	ATS1 Alpha-tubulin suppressor and related RCC1 dom	99.96
KOG0783|consensus	1267		99.91
KOG1428|consensus	3738		99.87
KOG0783|consensus	1267		99.83
KOG1428|consensus	3738		99.73
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.39
PF00415	51	RCC1: Regulator of chromosome condensation (RCC1)	99.35
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.3
PF13540	30	RCC1_2: Regulator of chromosome condensation (RCC1	99.29
KOG0941|consensus	850		99.28
KOG0941|consensus	850		98.93
KOG0943|consensus	3015		95.45
KOG3669|consensus	705		95.44
KOG3669|consensus	705		94.7
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	89.32
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.44
smart00706	35	TECPR Beta propeller repeats in Physarum polycepha	82.4
KOG0943|consensus	3015		80.3

>KOG1427|consensus

Probab=100.00  E-value=2.1e-32  Score=221.78  Aligned_cols=193  Identities=25%  Similarity=0.376  Sum_probs=165.0

Q ss_pred             eEecCeeeeccCCccEEEEecC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCC
Q psy1607          16 VFHMPSRMDHFLDLVVTDIACG--FDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW   93 (241)
Q Consensus        16 ~~~~p~~i~~~~~~~i~~i~~G--~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~   93 (241)
                      +...|.++..+.+.+|+.|++|  ..|+++|+-+|++|+||.|..||||+++..  ....|+.|..|...+|++.+||++
T Consensus        43 NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k--~~e~Ptvi~gL~~~~iv~AA~Grn  120 (443)
T KOG1427|consen   43 NLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMK--QRERPTVISGLSKHKIVKAAAGRN  120 (443)
T ss_pred             ccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchh--hccCCchhhhhhhhhHHHHhhccC
Confidence            5668899999999999999977  489999999999999999999999999776  899999999999999999999999


Q ss_pred             eEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607          94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ  173 (241)
Q Consensus        94 ~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq  173 (241)
                      |+++||++|.||++|.|++||||+++....+.. |.++-.      ....|+.|+||.++++.|...+.|..+|-..|||
T Consensus       121 HTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s-~~~~~~------~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygq  193 (443)
T KOG1427|consen  121 HTLVLTDTGQVLAFGENKYGQLGLGNAKNEVES-TPLPCV------VSDEVTNVACGADFTVWLSSTESILTAGLPQYGQ  193 (443)
T ss_pred             cEEEEecCCcEEEeccccccccccccccccccc-CCCccc------cCccceeeccccceEEEeecccceeecCCccccc
Confidence            999999999999999999999999987665433 333322      2468999999999999999999999999999999


Q ss_pred             ccCCCCCCce----------ecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         174 LSMGCGVSQV----------SVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       174 lG~~~~~~~~----------~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      ||++.+....          ....+...+..+.+..|+++|||.+|++++.++.
T Consensus       194 lgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtvavd~nk  247 (443)
T KOG1427|consen  194 LGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVAVDKNK  247 (443)
T ss_pred             cccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceeeecCCc
Confidence            9999764331          1122233444667778999999999999998873

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.97  E-value=1.7e-29  Score=216.44  Aligned_cols=192  Identities=24%  Similarity=0.382  Sum_probs=153.8

Q ss_pred             eeEecCeeeecc--CCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCC--------------CCCCCccCeEee
Q psy1607          15 QVFHMPSRMDHF--LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSS--------------GTDANMEPREIR   78 (241)
Q Consensus        15 ~~~~~p~~i~~~--~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~--------------~~~~~~~p~~v~   78 (241)
                      ...+.|+..++.  +...|++++||..|+++|+++|+||+||.|..|+||....              .......|..++
T Consensus        88 ~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~~~~~~~~~~~~~~~~~tP~~v~  167 (476)
T COG5184          88 TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVP  167 (476)
T ss_pred             hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccccccccccccchhhcccCCceee
Confidence            457889999987  6789999999999999999999999999999999998762              223466788887


Q ss_pred             e----cCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCC--c--eeeCCccccccccCCCCCCcEEEEEcc
Q psy1607          79 A----LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLD--L--VVHDPHPMSWSEDFDSQNIKVVDVACG  150 (241)
Q Consensus        79 ~----~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~--~--~~~~p~~v~~~~~~~~~~~~i~~i~~G  150 (241)
                      .    ....++++++||++++++|+++|+||.||....+.++.+....  +  ....|..+.        ...|+++++|
T Consensus       168 ~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~--------~~~i~qla~G  239 (476)
T COG5184         168 GGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP--------KKAIVQLAAG  239 (476)
T ss_pred             ccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeeeeecC--------chheeeeccC
Confidence            6    2334899999999999999999999999998888887773322  2  223344443        2589999999


Q ss_pred             CCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         151 SRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       151 ~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      .+|.++|+++|++|.||++..||||.... +....+..+..+....  .|..|+||.+|+++|.+++
T Consensus       240 ~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~-e~~~~~~lv~~~f~i~--~i~~vacG~~h~~al~~~G  303 (476)
T COG5184         240 ADHLIALTNEGKVYGWGSNQKGQLGRPTS-ERLKLVVLVGDPFAIR--NIKYVACGKDHSLALDEDG  303 (476)
T ss_pred             CceEEEEecCCcEEEecCCcccccCCchh-hhcccccccCChhhhh--hhhhcccCcceEEEEcCCC
Confidence            99999999999999999999999998754 3344444443333332  3789999999999999986

>KOG1427|consensus

Probab=99.96  E-value=1.4e-29  Score=205.45  Aligned_cols=209  Identities=19%  Similarity=0.279  Sum_probs=164.3

Q ss_pred             CccCCCCccccCc----eeEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEe
Q psy1607           2 CDHLASGPLKMLS----QVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI   77 (241)
Q Consensus         2 ~~~~~~g~l~~~g----~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v   77 (241)
                      |=.|+.++-.++|    +....|+.|+-++..+|++.+||++|+++||+.|.+|.||.|.+||||.+.... .+..|. +
T Consensus        79 ~~~wGRNekGQLGhgD~k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~-~v~s~~-~  156 (443)
T KOG1427|consen   79 CYTWGRNEKGQLGHGDMKQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKN-EVESTP-L  156 (443)
T ss_pred             eeecccCccCccCccchhhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccccccc-ccccCC-C
Confidence            4456666655555    455589999999999999999999999999999999999999999999998762 233333 3


Q ss_pred             eecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCcee----------eCCccccccccCCCCCCcEEEE
Q psy1607          78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVV----------HDPHPMSWSEDFDSQNIKVVDV  147 (241)
Q Consensus        78 ~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~----------~~p~~v~~~~~~~~~~~~i~~i  147 (241)
                      ....+..|+.|+||..|++.|+..+.+...|.-.+||||++.+.....          ..|++-.+.   +.....|+++
T Consensus       157 ~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~---~~dgvqiv~~  233 (443)
T KOG1427|consen  157 PCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIA---SLDGVQIVKV  233 (443)
T ss_pred             ccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccccc---cccceeeEEE
Confidence            334556899999999999999999999999999999999998765322          112222111   3467789999


Q ss_pred             EccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         148 ACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       148 ~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      +||.+|++++.++++||+||.+.||.||+.+..+ .-.|+.+++++. .+.--..+.||.-.|+.+..-+
T Consensus       234 acg~nhtvavd~nkrVysWGFGGyGRLGHaEqKD-EmvpRlik~Fd~-~~rg~~~~~~g~t~Sl~v~e~G  301 (443)
T KOG1427|consen  234 ACGTNHTVAVDKNKRVYSWGFGGYGRLGHAEQKD-EMVPRLIKVFDR-NNRGPPNAILGYTGSLNVAEGG  301 (443)
T ss_pred             eccCcceeeecCCccEEEeccccccccccccchh-hHHHHHHHHhcC-CCCCCcceeeecccceeecccc
Confidence            9999999999999999999999999999987643 556777776643 3334567888888888776653

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.96  E-value=1.2e-28  Score=211.14  Aligned_cols=208  Identities=27%  Similarity=0.381  Sum_probs=158.4

Q ss_pred             CCccCCCCccccCceeEecCeeeecc----CCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCC--ccC
Q psy1607           1 MCDHLASGPLKMLSQVFHMPSRMDHF----LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN--MEP   74 (241)
Q Consensus         1 ~~~~~~~g~l~~~g~~~~~p~~i~~~----~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~--~~p   74 (241)
                      ||+.=+++.+..+-....+|.+++..    ...++++++||++++++|+++|+||.||....+.++.+...+...  ..+
T Consensus       144 ~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~  223 (476)
T COG5184         144 ICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQF  223 (476)
T ss_pred             cccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeee
Confidence            45555555566665566788888872    345899999999999999999999999998888887774332233  333


Q ss_pred             eEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCce--eeCCccccccccCCCCCCcEEEEEccCC
Q psy1607          75 REIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLV--VHDPHPMSWSEDFDSQNIKVVDVACGSR  152 (241)
Q Consensus        75 ~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~--~~~p~~v~~~~~~~~~~~~i~~i~~G~~  152 (241)
                      +++... ...|+++++|.+|.++|+++|+||.||+|.+||||........  ...|.++.+        ..|+.|+||.+
T Consensus       224 ~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i--------~~i~~vacG~~  294 (476)
T COG5184         224 TPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAI--------RNIKYVACGKD  294 (476)
T ss_pred             eeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhh--------hhhhhcccCcc
Confidence            443332 4679999999999999999999999999999999987654321  122333332        25899999999


Q ss_pred             ceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         153 HTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       153 h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      |+++|.++|+||+||.|.+||||.+++......-++........+..|..+++|..|+++|.+++
T Consensus       295 h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G  359 (476)
T COG5184         295 HSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDG  359 (476)
T ss_pred             eEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCc
Confidence            99999999999999999999999984433333333444445566667999999999999999995

>KOG0783|consensus

Probab=99.91  E-value=1.1e-24  Score=195.86  Aligned_cols=203  Identities=26%  Similarity=0.383  Sum_probs=168.8

Q ss_pred             cCCCCccccCc----eeEecCeeeeccC--CccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEe
Q psy1607           4 HLASGPLKMLS----QVFHMPSRMDHFL--DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI   77 (241)
Q Consensus         4 ~~~~g~l~~~g----~~~~~p~~i~~~~--~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v   77 (241)
                      .||++..+++|    +....|..+.++.  +.-+.+|+.+..|++++++.|+||.||.+.-|+||++...  ..+.|.+|
T Consensus       146 ~wG~N~N~tLGign~~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq--~~~iPkrV  223 (1267)
T KOG0783|consen  146 GWGTNVNNTLGIGNGKEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQ--YNFIPKRV  223 (1267)
T ss_pred             EecccccccccccCCCCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccc--cccccccc
Confidence            46777777776    6777899998874  5678899999999999999999999999999999999887  88999999


Q ss_pred             eecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEE
Q psy1607          78 RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLAL  157 (241)
Q Consensus        78 ~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~l  157 (241)
                      +.+.+-++.+|+....|+++||++|.||+||.|.++|||+.++..+ ...|..+......  .-..|+.|++|..|+++.
T Consensus       224 ~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~-~~~p~qI~a~r~k--g~~~iIgvaAg~~hsVaw  300 (1267)
T KOG0783|consen  224 PGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELK-KDDPIQITARRIK--GFKQIIGVAAGKSHSVAW  300 (1267)
T ss_pred             ccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhh-cCchhhhhhHhhc--chhhhhhhhcccceeeee
Confidence            9999999999999999999999999999999999999999876553 2345555433211  112799999999999999


Q ss_pred             ecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         158 CDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       158 t~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      |+.. ||+||.| .||||..+....+..|+.+.    -...+|..|+|-..-|++++.+.
T Consensus       301 t~~~-VY~wGlN-~GQlGi~~n~~~Vt~Pr~l~----~~~~~v~~v~a~~~ATVc~~~~~  354 (1267)
T KOG0783|consen  301 TDTD-VYSWGLN-NGQLGISDNISVVTTPRRLA----GLLSPVIHVVATTRATVCLLQNN  354 (1267)
T ss_pred             ecce-EEEeccc-CceecCCCCCceeecchhhc----ccccceEEEEecCccEEEEecCC
Confidence            9655 9999998 89999988777777776542    12235899999999999998875

>KOG1428|consensus

Probab=99.87  E-value=3.3e-21  Score=179.99  Aligned_cols=204  Identities=23%  Similarity=0.300  Sum_probs=156.7

Q ss_pred             CCCccccCce----eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCC------------
Q psy1607           6 ASGPLKMLSQ----VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD------------   69 (241)
Q Consensus         6 ~~g~l~~~g~----~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~------------   69 (241)
                      ++|++++.|.    .-...+.+.-+++.-|.+++.|+.|.++++.+|.||.||.|+.+|+|+-.....            
T Consensus       586 enGkifM~G~~tm~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~  665 (3738)
T KOG1428|consen  586 ENGKIFMGGLHTMRVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEY  665 (3738)
T ss_pred             cCCeEEeecceeEEecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccCCcccccceee
Confidence            6788887773    223456777789999999999999999999999999999999999987422100            


Q ss_pred             ------------------------------------------------------------------------------CC
Q psy1607          70 ------------------------------------------------------------------------------AN   71 (241)
Q Consensus        70 ------------------------------------------------------------------------------~~   71 (241)
                                                                                                    ..
T Consensus       666 ~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~st  745 (3738)
T KOG1428|consen  666 QICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSST  745 (3738)
T ss_pred             cccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCCHHHhheeccc
Confidence                                                                                          00


Q ss_pred             cc-------CeEeee---cCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCC
Q psy1607          72 ME-------PREIRA---LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQN  141 (241)
Q Consensus        72 ~~-------p~~v~~---~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~  141 (241)
                      ..       |..|..   ..+.++.+|+||..|+++|.+|++||.+|.|.+||||+++...+  ..|+.+.++     .+
T Consensus       746 aa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk--~~Pq~V~~~-----~~  818 (3738)
T KOG1428|consen  746 AAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSK--NTPQQVILP-----SD  818 (3738)
T ss_pred             ccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccC--CCcceEEcC-----CC
Confidence            00       111110   11347899999999999999999999999999999999998875  578888877     55


Q ss_pred             CcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCc--eecceEecccccccCcCeeEEeccCCeeEEEecC
Q psy1607         142 IKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQ--VSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVP  216 (241)
Q Consensus       142 ~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~--~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~  216 (241)
                      ..|++|++|.+|++++..||.||.||.-..|||+.......  ...|.+++.+-.-.+.+..-|-+-++.+++-...
T Consensus       819 t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~G~~f~~~A~WIGAdGDss~i~~~t  895 (3738)
T KOG1428|consen  819 TVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGFGPGFNAFAGWIGADGDSSIIHSHT  895 (3738)
T ss_pred             CceEEEecCCCceEEEecCCcEEEeccccCccccCccccccccccCCCcCCCCCccccccceeeccCCCcceeehhh
Confidence            68999999999999999999999999999999998643221  3355666655555556677787777776665443

>KOG0783|consensus

Probab=99.83  E-value=5.2e-21  Score=172.49  Aligned_cols=165  Identities=20%  Similarity=0.279  Sum_probs=142.1

Q ss_pred             EEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeec--CCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCC
Q psy1607          43 ALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRAL--SGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGK  120 (241)
Q Consensus        43 ~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~--~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~  120 (241)
                      +++.-+.||+||.|...-||++..+  ....|..|+.+  .+.-+.+|..+.+|+++|++.|.||++|...-|++|++..
T Consensus       137 ~~d~pndvy~wG~N~N~tLGign~~--~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gde  214 (1267)
T KOG0783|consen  137 VLDLPNDVYGWGTNVNNTLGIGNGK--EPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDE  214 (1267)
T ss_pred             ccCCccceeEecccccccccccCCC--CCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCcc
Confidence            6677799999999999999999888  67778877754  4667889999999999999999999999999999999965


Q ss_pred             CCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCe
Q psy1607         121 LDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPI  200 (241)
Q Consensus       121 ~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i  200 (241)
                      ..  ...|++++.+     .+.+|.+|++...|+++||++|.||+||-|..+|||..++......|..+...+......|
T Consensus       215 q~--~~iPkrV~gL-----~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~i  287 (1267)
T KOG0783|consen  215 QY--NFIPKRVPGL-----IGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQI  287 (1267)
T ss_pred             cc--cccccccccc-----cccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhh
Confidence            54  4678888765     6789999999999999999999999999999999999987777777777664433333379


Q ss_pred             eEEeccCCeeEEEecC
Q psy1607         201 VKLFAEHWNSARLSVP  216 (241)
Q Consensus       201 ~~vacG~~~s~~lt~~  216 (241)
                      +-|+||..|+++.|..
T Consensus       288 IgvaAg~~hsVawt~~  303 (1267)
T KOG0783|consen  288 IGVAAGKSHSVAWTDT  303 (1267)
T ss_pred             hhhhcccceeeeeecc
Confidence            9999999999999876

>KOG1428|consensus

Probab=99.73  E-value=6.1e-17  Score=152.04  Aligned_cols=179  Identities=21%  Similarity=0.308  Sum_probs=129.0

Q ss_pred             eeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCC
Q psy1607          23 MDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDG  102 (241)
Q Consensus        23 i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g  102 (241)
                      ....+..+|+.+-+...-.-++.++|++|..|....-          .-...+.+..+.+..|.+++-|..|.++++.+|
T Consensus       563 ~~P~n~rKIv~v~~s~~VY~~vSenGkifM~G~~tm~----------~n~SSqmln~L~~~~isslAlGKsH~~av~rNG  632 (3738)
T KOG1428|consen  563 LVPSNRRKIVHVCASGHVYGYVSENGKIFMGGLHTMR----------VNVSSQMLNGLDNVMISSLALGKSHGVAVTRNG  632 (3738)
T ss_pred             cCCCCcceeEEEeeeeEEEEEEccCCeEEeecceeEE----------ecchHHHhhccccceeehhhccccceeEEEeCC
Confidence            3334456777774433333567899999998853210          112334566788889999999999999999999


Q ss_pred             CEEEEeCCCCCccCCCCCCCcee---------------------------------------------------------
Q psy1607         103 FLYAWGWNNGGQVGVEGKLDLVV---------------------------------------------------------  125 (241)
Q Consensus       103 ~vy~~G~n~~gqlg~~~~~~~~~---------------------------------------------------------  125 (241)
                      .||.||.|+.+|+|.-.......                                                         
T Consensus       633 ~l~T~GlNN~~QCGRVEs~sTt~s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~G  712 (3738)
T KOG1428|consen  633 HLFTWGLNNMNQCGRVESTSTTSSPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVG  712 (3738)
T ss_pred             eEEEEecCCcccccccccccccCCcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCC
Confidence            99999999999998642211000                                                         


Q ss_pred             ---------------------------------eCCcc-------ccccccCCCCCCcEEEEEccCCceEEEecCCcEEE
Q psy1607         126 ---------------------------------HDPHP-------MSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWG  165 (241)
Q Consensus       126 ---------------------------------~~p~~-------v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~  165 (241)
                                                       ..|++       +.+..  ..-+.++.+|+||..|+++|-+|++||.
T Consensus       713 ES~C~~CG~Cr~C~e~tE~~QPG~aqHvQ~~staa~QR~~~HPs~V~~sq--~~Hdvkv~sVSCG~~HtVlL~sd~~VfT  790 (3738)
T KOG1428|consen  713 ESTCLRCGLCRPCGEVTEPAQPGRAQHVQFSSTAAPQRSTLHPSRVILSQ--GPHDVKVSSVSCGNFHTVLLASDRRVFT  790 (3738)
T ss_pred             cccceeccccccccCcCCcCCCCHHHhheecccccccccccCchheeecc--CCcceeEEEEeccCceEEEEecCCcEEE
Confidence                                             11111       11111  1124578999999999999999999999


Q ss_pred             EecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         166 CGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       166 wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      ||.|-+||||.++... .+.|+.+-++.+.   .|++|++|.+|++++.-++
T Consensus       791 FG~~~HGQLG~GDt~S-k~~Pq~V~~~~~t---~~vQVaAGSNHT~l~~~DG  838 (3738)
T KOG1428|consen  791 FGSNCHGQLGVGDTLS-KNTPQQVILPSDT---VIVQVAAGSNHTILRANDG  838 (3738)
T ss_pred             ecCCcccccCcCcccc-CCCcceEEcCCCC---ceEEEecCCCceEEEecCC
Confidence            9999999999998854 4556666666554   4999999999999998775

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.39  E-value=7.1e-13  Score=82.40  Aligned_cols=51  Identities=27%  Similarity=0.358  Sum_probs=43.7

Q ss_pred             CCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEE
Q psy1607         160 DNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARL  213 (241)
Q Consensus       160 ~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~l  213 (241)
                      ||+||+||+|.+||||..........|+++..+..   .+|++|+||.+||++|
T Consensus         1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~---~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSG---VRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTT---SEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCC---CCEEEEEeCcceEEEC
Confidence            68999999999999994455577888888887766   5699999999999987

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS)

Probab=99.35  E-value=9.6e-13  Score=81.80  Aligned_cols=50  Identities=36%  Similarity=0.611  Sum_probs=45.8

Q ss_pred             CCcEEEEeCCCCCCCC-CCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEE
Q psy1607          47 EGIVFSWGNGSRGQLG-YPSSGTDANMEPREIRALSGLGVVQISAGGWHSAAR   98 (241)
Q Consensus        47 ~g~v~~~G~n~~gqlg-~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~l   98 (241)
                      +|+||+||.|.+|||| .....  ....|++++.+.+.+|++|+||.+|+++|
T Consensus         1 dG~vy~wG~n~~GqLG~~~~~~--~~~~P~~v~~~~~~~i~~va~G~~ht~~l   51 (51)
T PF00415_consen    1 DGRVYSWGSNDYGQLGSGGDNK--NVSVPTKVPFLSGVRIVQVACGSDHTLAL   51 (51)
T ss_dssp             TSEEEEEEEETTSTTSSSSSSS--EEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred             CCcEEEEECCCCCCCCCCCCCC--ceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence            6899999999999999 55555  88999999999999999999999999987

The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.30  E-value=3.6e-12  Score=69.87  Aligned_cols=30  Identities=47%  Similarity=0.761  Sum_probs=26.1

Q ss_pred             EEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607         144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQ  173 (241)
Q Consensus       144 i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq  173 (241)
                      |++|+||.+|+++|+++|+||+||.|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            789999999999999999999999999998

>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B

Probab=99.29  E-value=4.5e-12  Score=69.47  Aligned_cols=30  Identities=60%  Similarity=0.991  Sum_probs=25.9

Q ss_pred             eEEEEcCCCeEEEEEcCCCEEEEeCCCCCc
Q psy1607          85 VVQISAGGWHSAARTQDGFLYAWGWNNGGQ  114 (241)
Q Consensus        85 i~~I~~G~~~s~~lt~~g~vy~~G~n~~gq  114 (241)
                      |++|+||.+|+++|+++|+||+||.|.+||
T Consensus         1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ   30 (30)
T PF13540_consen    1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ   30 (30)
T ss_dssp             EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred             CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence            689999999999999999999999999987

>KOG0941|consensus

Probab=99.28  E-value=3.7e-14  Score=129.22  Aligned_cols=189  Identities=25%  Similarity=0.304  Sum_probs=140.5

Q ss_pred             ecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEE
Q psy1607          18 HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAA   97 (241)
Q Consensus        18 ~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~   97 (241)
                      +.|+++..+...+|.+++||.+|+++++..|+++.||.|.+||+|.+... .... |.+++.+.+.+..+|++|..|+++
T Consensus         3 ~~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~-~~~~-p~~~~sl~g~p~a~v~~g~~hs~~   80 (850)
T KOG0941|consen    3 RAPRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYF-PDAK-PEPVESLKGVPLAQVSAGEAHSFA   80 (850)
T ss_pred             chhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccC-CCCC-CccchhhcCCcHHHHhcCCCcchh
Confidence            45666677777789999999999999999999999999999999999444 2333 999999999999999999999877


Q ss_pred             EEc-------CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEec-CCcEEEEecC
Q psy1607          98 RTQ-------DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCD-DNSLWGCGWN  169 (241)
Q Consensus        98 lt~-------~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~-~g~v~~wG~n  169 (241)
                      +..       +|+++.+|....+|+|+......  ..|..+.-.     ...++.+|+||..|+.+... -|++|.+|.+
T Consensus        81 lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~--~~~~~v~e~-----i~~~~t~ia~~~~ht~a~v~~l~qsf~~~~~  153 (850)
T KOG0941|consen   81 LSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENE--VLPLLVLEL-----IGSRVTRIACVRGHTLAIVPRLGQSFSFGKG  153 (850)
T ss_pred             hhhchhhcchhccccccCCcccccccccccccc--cccHHHHHH-----HhhhhHHHHHHHHHHHhhhhhhcceeecccC
Confidence            666       99999999999999999544442  345554332     35689999999999987664 6899999998


Q ss_pred             CCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC
Q psy1607         170 EYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA  219 (241)
Q Consensus       170 ~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~  219 (241)
                      ..|.. .-   .....+......+......+..+++|++.++.+......
T Consensus       154 ~sGk~-~i---~s~s~~~~l~~~d~~~~~~~~~~~~g~dq~~~l~~~~~~  199 (850)
T KOG0941|consen  154 ASGKG-VI---VSLSGEDLLRDHDSEKDHRCSLAFAGGDQTFSLSSKGEN  199 (850)
T ss_pred             CCCCc-ee---eccchhhhcccccHHHHHHHHHHhcCCCceEEEEeeccc
Confidence            87710 00   001111111222222223466789999999999887543

>KOG0941|consensus

Probab=98.93  E-value=9.6e-12  Score=113.71  Aligned_cols=132  Identities=20%  Similarity=0.318  Sum_probs=102.2

Q ss_pred             CeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCc
Q psy1607          74 PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH  153 (241)
Q Consensus        74 p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h  153 (241)
                      |..+..+...++.+++||.+|+++++..|++++||.|.+||+|.+.....  ..|.++..+     .+.+..+|++|.+|
T Consensus         5 ~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~--~~p~~~~sl-----~g~p~a~v~~g~~h   77 (850)
T KOG0941|consen    5 PRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPD--AKPEPVESL-----KGVPLAQVSAGEAH   77 (850)
T ss_pred             hHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCC--CCCccchhh-----cCCcHHHHhcCCCc
Confidence            34444455568999999999999999999999999999999999844443  237777755     67789999999998


Q ss_pred             eEEEec-------CCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecC
Q psy1607         154 TLALCD-------DNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVP  216 (241)
Q Consensus       154 ~~~lt~-------~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~  216 (241)
                      ++++..       .|.++.+|+...||+|+........ |..   ..+.-+..+..++||-.|++++..+
T Consensus        78 s~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~-~~~---v~e~i~~~~t~ia~~~~ht~a~v~~  143 (850)
T KOG0941|consen   78 SFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVL-PLL---VLELIGSRVTRIACVRGHTLAIVPR  143 (850)
T ss_pred             chhhhhchhhcchhccccccCCcccccccccccccccc-cHH---HHHHHhhhhHHHHHHHHHHHhhhhh
Confidence            877665       9999999999999999954433222 111   2234455689999999999888665

>KOG0943|consensus

Probab=95.45  E-value=0.0012  Score=63.84  Aligned_cols=137  Identities=20%  Similarity=0.268  Sum_probs=96.6

Q ss_pred             CCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEe-eecCCCCeEEEEcCCCeEEEEEcCCCEE
Q psy1607          27 LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI-RALSGLGVVQISAGGWHSAARTQDGFLY  105 (241)
Q Consensus        27 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v-~~~~~~~i~~I~~G~~~s~~lt~~g~vy  105 (241)
                      ...+++.|.+-.+..++|..+|++|.|-+...--+-.+.........|... -.+.+.+|+.+++..--.-++|++|.|-
T Consensus       372 dan~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghla  451 (3015)
T KOG0943|consen  372 DANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLA  451 (3015)
T ss_pred             CCCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchh
Confidence            346788888888899999999999999987665555443332233334322 2467889999999999999999999999


Q ss_pred             EEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607         106 AWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ  173 (241)
Q Consensus       106 ~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq  173 (241)
                      .|=+    .+|.+..........+.+..      .+..+++.-|-..|+++.-+++.+|=||--.+-|
T Consensus       452 sWlD----EcgagV~fkLa~ea~Tkiee------d~~maVqd~~~adhlaAf~~dniihWcGiVPf~e  509 (3015)
T KOG0943|consen  452 SWLD----ECGAGVAFKLAHEAQTKIEE------DGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE  509 (3015)
T ss_pred             hHHh----hhhhhhhhhhhhhhhhhhhh------hhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence            9943    44444443322222333332      3456777778888999999999999999755444

>KOG3669|consensus

Probab=95.44  E-value=0.3  Score=44.44  Aligned_cols=107  Identities=23%  Similarity=0.222  Sum_probs=70.0

Q ss_pred             cCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecC-CCCeEEEEcCC-CeEEEEEcCCCEEE-EeCCCC
Q psy1607          36 CGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS-GLGVVQISAGG-WHSAARTQDGFLYA-WGWNNG  112 (241)
Q Consensus        36 ~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~-~~~i~~I~~G~-~~s~~lt~~g~vy~-~G~n~~  112 (241)
                      .|..-..+|+.+|++|-       +-|.....    +.-...+... ...+.+|++|. .-..+|+.+|.||. -|-..+
T Consensus       190 ~g~~~awAI~s~Gd~y~-------RtGvs~~~----P~GraW~~i~~~t~L~qISagPtg~VwAvt~nG~vf~R~GVsRq  258 (705)
T KOG3669|consen  190 LGDDTAWAIRSSGDLYL-------RTGVSVDR----PCGRAWKVICPYTDLSQISAGPTGVVWAVTENGAVFYREGVSRQ  258 (705)
T ss_pred             CCceEEEEEecCCcEEE-------eccccCCC----CCCceeeecCCCCccceEeecCcceEEEEeeCCcEEEEeccccc
Confidence            56677788899999884       12222211    1222222222 22588999999 56669999999874 477776


Q ss_pred             CccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEE
Q psy1607         113 GQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGC  166 (241)
Q Consensus       113 gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~w  166 (241)
                      .+.|..=.     .++.+....        .++.|+.|.....+|+.+|++|.-
T Consensus       259 Np~GdsWk-----dI~tP~~a~--------~~v~iSvGt~t~Waldndg~lwfr  299 (705)
T KOG3669|consen  259 NPEGDSWK-----DIVTPRQAL--------EPVCISVGTQTLWALDNDGNLWFR  299 (705)
T ss_pred             CCCCchhh-----hccCccccc--------ceEEEEeccceEEEEecCCcEEEE
Confidence            67664322     123333332        499999999999999999999863

>KOG3669|consensus

Probab=94.70  E-value=0.94  Score=41.40  Aligned_cols=70  Identities=27%  Similarity=0.220  Sum_probs=53.5

Q ss_pred             cEEEEecCC-CEEEEEECCCcEE-EEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEE
Q psy1607          30 VVTDIACGF-DHCLALTQEGIVF-SWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAW  107 (241)
Q Consensus        30 ~i~~i~~G~-~h~~~lt~~g~v~-~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~  107 (241)
                      .+.+|++|. .-..+++.+|+|| ..|-..+++.|..-.     ..+++...++   ++.|+.|....-+||.+|++|.-
T Consensus       228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk-----dI~tP~~a~~---~v~iSvGt~t~Waldndg~lwfr  299 (705)
T KOG3669|consen  228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK-----DIVTPRQALE---PVCISVGTQTLWALDNDGNLWFR  299 (705)
T ss_pred             ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh-----hccCcccccc---eEEEEeccceEEEEecCCcEEEE
Confidence            589999999 8888999999976 567677777665432     2333333322   89999998888899999999975

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=89.32  E-value=3.1  Score=42.83  Aligned_cols=135  Identities=17%  Similarity=0.254  Sum_probs=86.2

Q ss_pred             EeeecCCCCeEEEE-cCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCce
Q psy1607          76 EIRALSGLGVVQIS-AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHT  154 (241)
Q Consensus        76 ~v~~~~~~~i~~I~-~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~  154 (241)
                      .|..+.+..|..++ .+.++.++|+++|++-+.-  +-             ..|..+...    -....|++|++-..|.
T Consensus       696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~-------------g~p~~l~~~----gl~G~ik~l~lD~~~n  756 (1774)
T PF11725_consen  696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KP-------------GRPVPLSRP----GLSGEIKDLALDEKQN  756 (1774)
T ss_pred             cccCCCcCcceeEEEEcCCceEEeccCCcccccc--CC-------------CCCccCCCC----CCCcchhheeeccccc
Confidence            34455555666665 4778999999999876531  10             114444332    1235799999998865


Q ss_pred             -EEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCCCCCceeEEeccccc
Q psy1607         155 -LALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHAKDSSIVKLFAGHWN  233 (241)
Q Consensus       155 -~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~~~~~~~~~~~~~~~  233 (241)
                       +++|.+|+||.-=.-.+.+.-.++  .....|+++.++.+   .+|..+....+|.+.++..+.....+.-..-.+.|.
T Consensus       757 L~Alt~~G~Lf~~~k~~WQ~~~~~~--~~~~~W~~v~lP~~---~~v~~l~~~~~~~l~~~~~d~~~~~~~~qlk~~~W~  831 (1774)
T PF11725_consen  757 LYALTSTGELFRLPKEAWQGNAEGD--QMAAKWQKVALPDE---QPVKSLRTNDDNHLSAQIEDGANGQGLHQLKAGEWQ  831 (1774)
T ss_pred             eeEecCCCceeecCHHHhhCcccCC--ccccCceeccCCCC---CchhhhhcCCCCceEEEecCCCcchhhhhhhccccc
Confidence             699999999985443333332221  12357888887744   359999999999999998875333333344555665


Q ss_pred             c
Q psy1607         234 S  234 (241)
Q Consensus       234 s  234 (241)
                      .
T Consensus       832 ~  832 (1774)
T PF11725_consen  832 A  832 (1774)
T ss_pred             c
Confidence            4

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.44  E-value=3.6  Score=33.36  Aligned_cols=30  Identities=30%  Similarity=0.485  Sum_probs=25.9

Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCEEEEeCCC
Q psy1607          82 GLGVVQISAGGWHSAARTQDGFLYAWGWNN  111 (241)
Q Consensus        82 ~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~  111 (241)
                      +.++..+.|-..+-++||++|.+|+|--..
T Consensus        12 gs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~   41 (219)
T PF07569_consen   12 GSPVSFLECNGSYLLAITSSGLLYVWNLKK   41 (219)
T ss_pred             CCceEEEEeCCCEEEEEeCCCeEEEEECCC
Confidence            357888999999999999999999997654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins

Probab=82.40  E-value=3.5  Score=22.62  Aligned_cols=24  Identities=17%  Similarity=0.369  Sum_probs=21.5

Q ss_pred             ccEEEEecCC-CEEEEEECCCcEEE
Q psy1607          29 LVVTDIACGF-DHCLALTQEGIVFS   52 (241)
Q Consensus        29 ~~i~~i~~G~-~h~~~lt~~g~v~~   52 (241)
                      -++++|++|. +...+++.+|.+|.
T Consensus         8 g~l~~isvg~~~~vW~V~~~g~i~~   32 (35)
T smart00706        8 GELVQVSVGPSDTVWAVNSDGNIYR   32 (35)
T ss_pred             CCEEEEEECCCCeEEEEcCCCCEEE
Confidence            4689999999 99999999999995

>KOG0943|consensus

Probab=80.30  E-value=2.4  Score=42.41  Aligned_cols=83  Identities=13%  Similarity=0.151  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCC
Q psy1607          82 GLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDN  161 (241)
Q Consensus        82 ~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g  161 (241)
                      ..+++.|.+-++-.++|..+|++|.|-+....-+-......+...-|..-.+    ..-+.+|+.+++..-..-++|++|
T Consensus       373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~i----G~hge~ii~lSanniR~si~T~ng  448 (3015)
T KOG0943|consen  373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFI----GLHGEKIILLSANNIRASIATENG  448 (3015)
T ss_pred             CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCcccee----cccCCeeEEeecCceeeeeeecCC
Confidence            4578899888888999999999999998765444332222111112222211    124578999999998999999999


Q ss_pred             cEEEEec
Q psy1607         162 SLWGCGW  168 (241)
Q Consensus       162 ~v~~wG~  168 (241)
                      .|-+|=.
T Consensus       449 hlasWlD  455 (3015)
T KOG0943|consen  449 HLASWLD  455 (3015)
T ss_pred             chhhHHh
Confidence            9999843

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	241
4d9s_A	406	Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv		3e-22
4dnv_A	370	Crystal Structure Of The W285f Mutant Of Uvb-Resist		3e-22
4dnu_A	372	Crystal Structure Of The W285a Mutant Of Uvb-Resist		3e-22
4dnw_A	374	Crystal Structure Of Uvb-Resistance Protein Uvr8 Le		3e-22
3kci_A	389	The Third Rld Domain Of Herc2 Length = 389		4e-17
3kci_A	389	The Third Rld Domain Of Herc2 Length = 389		9e-04
3of7_A	473	The Crystal Structure Of Prp20p From Saccharomyces		1e-13
1a12_A	413	Regulator Of Chromosome Condensation (Rcc1) Of Huma		9e-10
1i2m_B	402	Ran-Rcc1-So4 Complex Length = 402		1e-09
3mvd_K	423	Crystal Structure Of The Chromatin Factor Rcc1 In C		3e-05
3mvd_K	423	Crystal Structure Of The Chromatin Factor Rcc1 In C		2e-04

>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 14  SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
           S     P  +     + +  IACG  HCLA+T EG V SWG    GQLG     T+ ++ 
Sbjct: 106 SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLV 163
Query: 74  PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
           P++I+A  G+ +  ++AG  H+AA T+DG LY WGW   G +G+  + D +V +    + 
Sbjct: 164 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 223
Query: 134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
            E       K+  VACG RHT+++    +L+  GW++Y QL  G
Sbjct: 224 GE-------KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 260

>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/164 (34%), Positives = 90/164 (54%), Gaps = 9/164 (5%)
Query: 19  MPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR 78
           +P R+       ++ +ACG+ H ++++  G ++++G    GQLG+     + ++ P ++ 
Sbjct: 203 VPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLE 260
Query: 79  ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
           ALS   + QIS G  H+ A T DG LY WGWN  GQVGV   LD     P  + + +D  
Sbjct: 261 ALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC--SPVQVRFPDD-- 316
Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQ 182
               KVV V+CG RHTLA+ + N+++  G     QL +G  V +
Sbjct: 317 ---QKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDR 357

>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 88/164 (53%), Gaps = 9/164 (5%)
Query: 14  SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
           S     P  +     + +  IACG  HCLA+T EG V SWG    GQLG     T+ ++ 
Sbjct: 96  SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSWGRNQNGQLGLGD--TEDSLV 153
Query: 74  PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
           P++I+A  G+ +  ++AG  H+AA T+DG LY WGW   G +G+  + D +V +    + 
Sbjct: 154 PQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 213
Query: 134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
            E       K   VACG RHT+++    +L+  GW++Y QL  G
Sbjct: 214 GE-------KXSXVACGWRHTISVSYSGALYTYGWSKYGQLGHG 250

>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374

Iteration: 1
 Score =  101 bits (252), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 89/164 (54%), Gaps = 9/164 (5%)
Query: 14  SQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME 73
           S     P  +     + +  IACG  HCLA+T EG V SWG    GQLG     T+ ++ 
Sbjct: 94  SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGD--TEDSLV 151
Query: 74  PREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSW 133
           P++I+A  G+ +  ++AG  H+AA T+DG LY WGW   G +G+  + D +V +    + 
Sbjct: 152 PQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG 211
Query: 134 SEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
            E       K+  VACG RHT+++    +L+  GW++Y QL  G
Sbjct: 212 GE-------KMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHG 248

>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 86/168 (51%), Gaps = 13/168 (7%)
Query: 14  SQVFHMPSRMDHFLDLVVTDIAC--GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN 71
           ++    P+ ++    + +  +A   G  HCLAL+ EG V+SWG    G+LG+ +      
Sbjct: 90  TESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNR--SPC 147
Query: 72  MEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPM 131
             PR I +L G+ VV ++AGG HSA  T  G LY WG    G++G     D +   P  +
Sbjct: 148 DRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQL--KPKLV 205
Query: 132 SWSEDFDSQNIKVVDVACGS--RHTLALCDDNSLWGCGWNEYNQLSMG 177
                   Q  +VVD+ACGS    TL L DD+++W  G  +Y +L  G
Sbjct: 206 E-----ALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRG 248

>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 68/170 (40%), Gaps = 11/170 (6%)
Query: 42  LALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQD 101
           L     G ++ WG+  RGQLG    G    + P    AL+ L  VQ+  G     A T D
Sbjct: 14  LYFQGSGTIYGWGHNHRGQLG-GIEGAKVKV-PTPCEALATLRPVQLIGGEQTLFAVTAD 71
Query: 102 GFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDN 161
           G LYA G+       +       V  P  +   E      IK V V  G +H LAL  + 
Sbjct: 72  GKLYATGYGA--GGRLGIGGTESVSTPTLL---ESIQHVFIKKVAVNSGGKHCLALSSEG 126
Query: 162 SLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSA 211
            ++  G  E  +L  G      S   R  V E ++   +V + A   +SA
Sbjct: 127 EVYSWGEAEDGKLGHG----NRSPCDRPRVIESLRGIEVVDVAAGGAHSA 172

>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 57/205 (27%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 3   DHLASGPLKMLSQVFHMPSRMDHFLDLVVTD-IACGFDHCLALTQEGIVFSWGNG--SRG 59
           + L S P K+  + F   +     + L  TD ++C      AL   G V++WG    + G
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSC------ALFSNGEVYAWGTFRCNEG 180
Query: 60  QLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVG--V 117
            LG+          P ++   S   +VQ++ G  H     ++G ++AWG     Q+G  V
Sbjct: 181 ILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKV 240
Query: 118 EGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMG 177
             +  L   DP P      F  +++K   +A G  H  AL  DN L   G N++ Q    
Sbjct: 241 MERFRLKTLDPRP------FGLRHVKY--IASGENHCFALTKDNKLVSWGLNQFGQ---- 288
Query: 178 CGVSQ-------VSVMTRLSVPEHV 195
           CGVS+       V+   RL++P++V
Sbjct: 289 CGVSEDVEDGALVTKPKRLALPDNV 313

>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 27  LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLG-----YPSSGTDANME----PR-- 75
           LD+ V  +A G DH + LT +G +++ G G +GQLG     + + G    +E    P+  
Sbjct: 162 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 221
Query: 76  EIRALSGLGVVQIS---AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
            +++    G V+      G + + A + +G +Y +G +N  Q+G  G     +  P  ++
Sbjct: 222 MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI--PQNLT 279
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
               F +     V  + G  HT+ +  +   +  G  EY +L +G G  + S+ T +S
Sbjct: 280 ---SFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 334

>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 83/178 (46%), Gaps = 19/178 (10%)
Query: 27  LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLG-----YPSSGTDANME----PR-- 75
           LD+ V  +A G DH + LT +G +++ G G +GQLG     + + G    +E    P+  
Sbjct: 151 LDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCV 210
Query: 76  EIRALSGLGVVQIS---AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMS 132
            +++    G V+      G + + A + +G +Y +G +N  Q+G  G     +  P  ++
Sbjct: 211 MLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI--PQNLT 268
Query: 133 WSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
               F +     V  + G  HT+ +  +   +  G  EY +L +G G  + S+ T +S
Sbjct: 269 ---SFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLIS 323

>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 49/98 (50%), Gaps = 11/98 (11%)
Query: 11  KMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDA 70
           K LS V  +P            DI+ G  H L LT+ G ++S+G    G LG  +S   +
Sbjct: 66  KRLSPVAGIPD---------AVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS 116
Query: 71  NMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG 108
             +P ++  L G  +  ISAG  HSA   +DG ++AWG
Sbjct: 117 ESKP-DLIDLPGKALC-ISAGDSHSACLLEDGRVFAWG 152

>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 48  GIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGL-GVVQISAGGWHSAARTQDGFLYA 106
           G V   GNG  GQLG    G D  +E + +  ++G+   V ISAGG H+   T+ G +Y+
Sbjct: 43  GNVLVCGNGDVGQLGL---GEDI-LERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYS 98
Query: 107 WGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGC 166
           +G N+ G +G +   D     P       D      K + ++ G  H+  L +D  ++  
Sbjct: 99  FGCNDEGALGRDTSEDGSESKP-------DLIDLPGKALCISAGDSHSACLLEDGRVFAW 151
Query: 167 GWNEYNQLSMG 177
           G    +  +MG
Sbjct: 152 GSFRDSHGNMG 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	241
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	4e-43
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	6e-42
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-40
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	1e-40
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	5e-38
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	2e-33
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	9e-21
3of7_A	473	Regulator of chromosome condensation; beta-propell	5e-43
3of7_A	473	Regulator of chromosome condensation; beta-propell	7e-41
3of7_A	473	Regulator of chromosome condensation; beta-propell	2e-39
3of7_A	473	Regulator of chromosome condensation; beta-propell	7e-37
3of7_A	473	Regulator of chromosome condensation; beta-propell	6e-32
3of7_A	473	Regulator of chromosome condensation; beta-propell	4e-23
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	3e-41
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	3e-39
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	9e-39
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	4e-38
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	2e-37
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	8e-34
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	3e-21
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	1e-16
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	4e-40
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	7e-40
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	2e-39
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	2e-39
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	5e-39
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	1e-34
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	2e-21
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	3e-39
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	2e-38
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	1e-36
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	9e-35
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	4e-33
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	6e-23
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	4e-06
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	2e-27
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	6e-27
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	2e-26
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	7e-26
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	2e-21
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	1e-19

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  149 bits (378), Expect = 4e-43
 Identities = 57/156 (36%), Positives = 87/156 (55%), Gaps = 11/156 (7%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN-MEPREIR 78
           P  +     + +  IACG  HCLA+T EG V SWG    GQLG    G   + + P++I+
Sbjct: 112 PLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGL---GDTEDSLVPQKIQ 168

Query: 79  ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
           A  G+ +  ++AG  H+AA T+DG LY WGW   G +G+  + D +V  P  ++      
Sbjct: 169 AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLV--PERVT-----S 221

Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
           +   K+  VACG RHT+++    +L+  GW++Y QL
Sbjct: 222 TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQL 257

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  146 bits (370), Expect = 6e-42
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 9/157 (5%)

Query: 18  HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
            +P ++  F  + +  +A G +H  A+T++G ++ WG G  G LG         + P  +
Sbjct: 162 LVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGD--RTDRLVPERV 219

Query: 78  RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
            +  G  +  ++ G  H+ + +  G LY +GW+  GQ+G     D ++  PH +      
Sbjct: 220 TSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI--PHKLE----- 272

Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
              N  +  ++ G RHT+AL  D  L+G GWN++ Q+
Sbjct: 273 ALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQV 309

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  142 bits (361), Expect = 1e-40
 Identities = 55/155 (35%), Positives = 85/155 (54%), Gaps = 9/155 (5%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P R+       ++ +ACG+ H ++++  G ++++G    GQLG+     + ++ P ++ A
Sbjct: 216 PERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGD--LEDHLIPHKLEA 273

Query: 80  LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
           LS   + QIS G  H+ A T DG LY WGWN  GQVGV   LD     P  + + +D   
Sbjct: 274 LSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD--QCSPVQVRFPDDQ-- 329

Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
              KVV V+CG RHTLA+ + N+++  G     QL
Sbjct: 330 ---KVVQVSCGWRHTLAVTERNNVFAWGRGTNGQL 361

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  142 bits (361), Expect = 1e-40
 Identities = 56/198 (28%), Positives = 93/198 (46%), Gaps = 20/198 (10%)

Query: 18  HMPSRMDHFLDLVVTDIACGFDHCLALTQEGI-VFSWGNGSRGQLGYPSSGTDANMEPRE 76
             P+++       +  + CG DH +A +Q G+ V+SWG G  G+LG+ +  +     P  
Sbjct: 57  PSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGN--SSDLFTPLP 114

Query: 77  IRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSED 136
           I+AL G+ + QI+ G  H  A T +G + +WG N  GQ+G+    D +V  P  +     
Sbjct: 115 IKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLV--PQKIQ---- 168

Query: 137 FDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
              + I++  VA G+ HT A+ +D  L+G GW  Y  L +G    +        VPE V 
Sbjct: 169 -AFEGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDR-------LVPERVT 220

Query: 197 ---NCPIVKLFAEHWNSA 211
                 +  +     ++ 
Sbjct: 221 STGGEKMSMVACGWRHTI 238

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  135 bits (343), Expect = 5e-38
 Identities = 46/145 (31%), Positives = 71/145 (48%), Gaps = 10/145 (6%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V  I+ G  H +AL    IV SWG G  GQLG+     +    P ++ AL G  +V ++ 
Sbjct: 18  VLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGD--AEDRPSPTQLSALDGHQIVSVTC 75

Query: 91  GGWHSAARTQDGF-LYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVAC 149
           G  H+ A +Q G  +Y+WGW + G++G     D  +  P P+          I++  +AC
Sbjct: 76  GADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSD--LFTPLPIK-----ALHGIRIKQIAC 128

Query: 150 GSRHTLALCDDNSLWGCGWNEYNQL 174
           G  H LA+  +  +   G N+  QL
Sbjct: 129 GDSHCLAVTMEGEVQSWGRNQNGQL 153

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score =  123 bits (311), Expect = 2e-33
 Identities = 38/150 (25%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P +++   +  ++ I+ G+ H +ALT +G ++ WG    GQ+G  +        P ++R 
Sbjct: 268 PHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN--NLDQCSPVQVRF 325

Query: 80  LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
                VVQ+S G  H+ A T+   ++AWG    GQ+G+   +D   + P  +        
Sbjct: 326 PDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVD--RNFPKIIEA------ 377

Query: 140 QNIKVVDVACGSRHTLALCDDNSL--WGCG 167
                VD A G     +  D +S   W   
Sbjct: 378 ---LSVDGASGQHIESSNIDPSSGKSWVSP 404

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406

 Score = 88.8 bits (221), Expect = 9e-21
 Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 67  GTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVH 126
           G   +M   E+       V+ ISAG  HS A      + +WG    GQ+G     D    
Sbjct: 1   GMAEDMAADEV-TAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED--RP 57

Query: 127 DPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDD-NSLWGCGWNEYNQL 174
            P  +S          ++V V CG+ HT+A       ++  GW ++ +L
Sbjct: 58  SPTQLSA-----LDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRL 101

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  150 bits (380), Expect = 5e-43
 Identities = 50/183 (27%), Positives = 79/183 (43%), Gaps = 6/183 (3%)

Query: 18  HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
             P ++  F    +  +A G DH L L +EG+VF+WGNG + QLG         ++  + 
Sbjct: 193 KTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVM-ERFRLKTLDP 251

Query: 78  RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
           R      V  I++G  H  A T+D  L +WG N  GQ GV   ++       P   +   
Sbjct: 252 RPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP- 310

Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKN 197
              N+ +  +A G  H+L L  D  L+ CG  +  ++  G     +   T   V    + 
Sbjct: 311 --DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEV--GIPKDNLPEYTYKDVHGKARA 366

Query: 198 CPI 200
            P+
Sbjct: 367 VPL 369

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  144 bits (366), Expect = 7e-41
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 7/170 (4%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN--MEPREIRALSGLGVVQI 88
           V  IA G +HC ALT++  + SWG    GQ G      D     +P+ +     + +  I
Sbjct: 259 VKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSI 318

Query: 89  SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQ-----NIK 143
           +AG  HS   +QDG LY+ G  +  +VG+                +             K
Sbjct: 319 AAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLNNVPK 378

Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPE 193
              VA GS H++A+  +   +  G+ E   + +G       V TR+    
Sbjct: 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTA 428

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  141 bits (356), Expect = 2e-39
 Identities = 40/179 (22%), Positives = 66/179 (36%), Gaps = 11/179 (6%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREI 77
            S         V  +A   +   AL   G V++WG    + G LG+          P ++
Sbjct: 139 ESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKV 198

Query: 78  RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
              S   +VQ++ G  H     ++G ++AWG     Q+G        V +   +   +  
Sbjct: 199 PTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLG------RKVMERFRLKTLDPR 252

Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
                 V  +A G  H  AL  DN L   G N++ Q   G     V     ++ P+ + 
Sbjct: 253 PFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQC--GVS-EDVEDGALVTKPKRLA 308

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  134 bits (338), Expect = 7e-37
 Identities = 34/191 (17%), Positives = 65/191 (34%), Gaps = 28/191 (14%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANME-PREIRALS--GLGVVQ 87
           + +    + H     Q   +F WG GS  +LG      +  ++ PR    L      ++ 
Sbjct: 12  IINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIIS 71

Query: 88  ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS-------- 139
            + GG H+ A  ++  +++WG N+ G +G +               S D +         
Sbjct: 72  FAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELES 131

Query: 140 --------------QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSV 185
                         +  KVV +A     + AL  +  ++  G    N+  +G    ++  
Sbjct: 132 TPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKI-- 189

Query: 186 MTRLSVPEHVK 196
                 P  V 
Sbjct: 190 -KIQKTPWKVP 199

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score =  120 bits (303), Expect = 6e-32
 Identities = 36/169 (21%), Positives = 69/169 (40%), Gaps = 19/169 (11%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT----------D 69
           P R+    ++V+  IA G  H L L+Q+G ++S G     ++G P               
Sbjct: 304 PKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGK 363

Query: 70  ANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPH 129
           A   P   +  +      ++AG  HS A  Q+G  Y+WG+     VG+ G  +     P 
Sbjct: 364 ARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGL-GPFEDDTEVPT 422

Query: 130 PMSWSEDFDSQNIKVVDVACGSRHTLAL-----CDDNSLWGCGWNEYNQ 173
            +   ++  +Q+  ++ V CG + +++       +D        ++   
Sbjct: 423 RI---KNTATQDHNIILVGCGGQFSVSGGVKLSDEDAEKRADEMDDLEH 468

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473

 Score = 96.0 bits (239), Expect = 4e-23
 Identities = 30/157 (19%), Positives = 54/157 (34%), Gaps = 7/157 (4%)

Query: 84  GVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIK 143
            ++       H     Q   ++ WG  +  ++G+         +      +        K
Sbjct: 11  HIINAQEDYKHMYLSVQPLDIFCWGTGSMCELGLGPLAK--NKEVKRPRLNPFLPRDEAK 68

Query: 144 VVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKL 203
           ++  A G  HTLAL +++++W  G N+   L  G   S      +    +   +     L
Sbjct: 69  IISFAVGGMHTLALDEESNVWSWGCNDVGAL--GRDTSNAKEQLKDMDADDSSDDEDGDL 126

Query: 204 FAEHWNSA---RLSVPEHAKDSSIVKLFAGHWNSGIL 237
                  A   R S P  A+   +V+L A    S  L
Sbjct: 127 NELESTPAKIPRESFPPLAEGHKVVQLAATDNMSCAL 163

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  144 bits (365), Expect = 3e-41
 Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 19/180 (10%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLG---------YPSSGTDANMEPREIRA-- 79
           V  +A G DH + LT +G +++ G G +GQLG             G +  + P+ +    
Sbjct: 166 VVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKS 225

Query: 80  ---LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSED 136
                 +       G + + A + +G +Y +G +N  Q+G  G     +  P  +     
Sbjct: 226 RGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFI--PQNL---TS 280

Query: 137 FDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
           F +     V  + G  HT+ +  +   +  G  EY +L +G G  + S+ T +S    V 
Sbjct: 281 FKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLPAVS 340

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  138 bits (351), Expect = 3e-39
 Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 12/146 (8%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLG--VVQI 88
             D  CG     A++ EG V+ +G  +  QLG P   T++   P+ + +        V  
Sbjct: 234 FQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPG--TESCFIPQNLTSFKNSTKSWVGF 291

Query: 89  SAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
           S G  H+     +G  Y+ G    G++G+ G+       P  +S           V  VA
Sbjct: 292 SGGQHHTVCMDSEGKAYSLGRAEYGRLGL-GEGAEEKSIPTLISRLP-------AVSSVA 343

Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQL 174
           CG+    A+  D  ++  G     QL
Sbjct: 344 CGASVGYAVTKDGRVFAWGMGTNYQL 369

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  138 bits (349), Expect = 9e-39
 Identities = 37/155 (23%), Positives = 64/155 (41%), Gaps = 14/155 (9%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREIRALSGLGVVQI 88
           V  ++ G  H  ALT +G VF WG+   + G +G              ++    + VV++
Sbjct: 113 VVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGL---LEPMKKSMVPVQVQLDVPVVKV 169

Query: 89  SAGGWHSAARTQDGFLYAWGWNNGGQVG---------VEGKLDLVVHDPHPMSWSEDFDS 139
           ++G  H    T DG LY  G    GQ+G            +    +  P  +        
Sbjct: 170 ASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSR 229

Query: 140 QNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
            +++  D  CG+  T A+  +  ++G G + Y+QL
Sbjct: 230 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQL 264

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  136 bits (344), Expect = 4e-38
 Identities = 50/184 (27%), Positives = 75/184 (40%), Gaps = 16/184 (8%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V     G  H + L++ G V+S+G    G LG  +S   + M P ++       VVQ+SA
Sbjct: 61  VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE--KVVQVSA 118

Query: 91  GGWHSAARTQDGFLYAWG--WNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA 148
           G  H+AA T DG ++ WG   +N G +G+   +      P  +            VV VA
Sbjct: 119 GDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-KSMVPVQVQLDV-------PVVKVA 170

Query: 149 CGSRHTLALCDDNSLWGCGWNEYNQL----SMGCGVSQVSVMTRLSVPEHVKNCPIVKLF 204
            G+ H + L  D  L+  G  E  QL     +         + RL VP+ V         
Sbjct: 171 SGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRG 230

Query: 205 AEHW 208
              +
Sbjct: 231 HVRF 234

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  134 bits (340), Expect = 2e-37
 Identities = 42/172 (24%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 27  LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVV 86
            D +         H    T+ G+V + G G  GQLG   +  +   +P  +       VV
Sbjct: 6   ADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERK-KPALVSIPED--VV 62

Query: 87  QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD 146
           Q  AGG H+   ++ G +Y++G N+ G +G +  ++     P  +   E       KVV 
Sbjct: 63  QAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQE-------KVVQ 115

Query: 147 VACGSRHTLALCDDNSL--WGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
           V+ G  HT AL DD  +  WG   +    + +   + +  V  ++ +   V 
Sbjct: 116 VSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVV 167

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score =  124 bits (314), Expect = 8e-34
 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
               + G  H + +  EG  +S G    G+LG      +    P  I  L    V  ++ 
Sbjct: 288 WVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE-KSIPTLISRLPA--VSSVAC 344

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           G     A T+DG ++AWG     Q+G     D     P  M        +N  V+ V+ G
Sbjct: 345 GASVGYAVTKDGRVFAWGMGTNYQLGTGQDED--AWSPVEMMGK---QLENRVVLSVSSG 399

Query: 151 SRHTLALCDD 160
            +HT+ L  D
Sbjct: 400 GQHTVLLVKD 409

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 90.5 bits (225), Expect = 3e-21
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 79  ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFD 138
             +            H +  T+ G +   G  + GQ+G+ G+  +    P  +S  ED  
Sbjct: 4   PPADAIPKSKKVKVSHRSHSTEPGLVLTLGQGDVGQLGL-GENVMERKKPALVSIPED-- 60

Query: 139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
                VV    G  HT+ L     ++  G N+   L
Sbjct: 61  -----VVQAEAGGMHTVCLSKSGQVYSFGCNDEGAL 91

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413

 Score = 77.4 bits (191), Expect = 1e-16
 Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 6/75 (8%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN-MEPREIR--ALSGLGVVQ 87
           V+ +ACG     A+T++G VF+WG G+  QLG    G D +   P E+    L    V+ 
Sbjct: 339 VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGT---GQDEDAWSPVEMMGKQLENRVVLS 395

Query: 88  ISAGGWHSAARTQDG 102
           +S+GG H+    +D 
Sbjct: 396 VSSGGQHTVLLVKDK 410

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  141 bits (357), Expect = 4e-40
 Identities = 42/157 (26%), Positives = 78/157 (49%), Gaps = 11/157 (7%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P  ++    + V D+A G  H   +T  G +++WG G  G+LG+    ++  ++P+ + A
Sbjct: 150 PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSD--SEDQLKPKLVEA 207

Query: 80  LSGLGVVQIS--AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
           L G  VV I+  +G   +   T D  +++WG  + G++G  G     V  P  +      
Sbjct: 208 LQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKV--PMKID----- 260

Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
               + VV V CGS+ ++AL    +++  G  +Y++L
Sbjct: 261 SLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRL 297

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  140 bits (355), Expect = 7e-40
 Identities = 55/149 (36%), Positives = 76/149 (51%), Gaps = 11/149 (7%)

Query: 28  DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQ 87
            +    +  G  HCLAL+ EG V+SWG    G+LG+ +        PR I +L G+ VV 
Sbjct: 106 FIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGN--RSPCDRPRVIESLRGIEVVD 163

Query: 88  ISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV 147
           ++AGG HSA  T  G LY WG    G++G     D     P  +        Q  +VVD+
Sbjct: 164 VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSED--QLKPKLVE-----ALQGHRVVDI 216

Query: 148 ACGS--RHTLALCDDNSLWGCGWNEYNQL 174
           ACGS    TL L DD+++W  G  +Y +L
Sbjct: 217 ACGSGDAQTLCLTDDDTVWSWGDGDYGKL 245

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  139 bits (352), Expect = 2e-39
 Identities = 37/159 (23%), Positives = 72/159 (45%), Gaps = 11/159 (6%)

Query: 18  HMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
            +P+  +    L    +  G     A+T +G +++ G G+ G+LG     T++   P  +
Sbjct: 42  KVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGG--TESVSTPTLL 99

Query: 78  RALSGLGV--VQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSE 135
            ++  + +  V +++GG H  A + +G +Y+WG    G++G   +       P  +    
Sbjct: 100 ESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDR--PRVIE--- 154

Query: 136 DFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
               + I+VVDVA G  H+  +     L+  G   Y +L
Sbjct: 155 --SLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRL 191

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  139 bits (352), Expect = 2e-39
 Identities = 43/141 (30%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 34  IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
                   L     G ++ WG+  RGQLG           P    AL+ L  VQ+  G  
Sbjct: 6   HHSSGRENLYFQGSGTIYGWGHNHRGQLGGIE--GAKVKVPTPCEALATLRPVQLIGGEQ 63

Query: 94  HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH 153
              A T DG LYA G+  GG++G+ G     V  P  +   E      IK V V  G +H
Sbjct: 64  TLFAVTADGKLYATGYGAGGRLGIGGTES--VSTPTLL---ESIQHVFIKKVAVNSGGKH 118

Query: 154 TLALCDDNSLWGCGWNEYNQL 174
            LAL  +  ++  G  E  +L
Sbjct: 119 CLALSSEGEVYSWGEAEDGKL 139

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  138 bits (349), Expect = 5e-39
 Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 11/157 (7%)

Query: 20  PSRMDHFLDLVVTDIAC--GFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREI 77
           P  ++      V DIAC  G    L LT +  V+SWG+G  G+LG     +D    P +I
Sbjct: 202 PKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGG--SDGCKVPMKI 259

Query: 78  RALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDF 137
            +L+GLGVV++  G   S A T+ G +Y WG  +  ++G        V  P  +   +  
Sbjct: 260 DSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDH--VRRPRQVQGLQ-- 315

Query: 138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
                KV+ +A GS H +   +D  ++  G N+  QL
Sbjct: 316 ---GKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQL 349

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score =  126 bits (319), Expect = 1e-34
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 9/140 (6%)

Query: 20  PSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRA 79
           P ++D    L V  + CG    +ALT+ G V++WG G   +LG+ S   D    PR+++ 
Sbjct: 256 PMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--DDHVRRPRQVQG 313

Query: 80  LSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDS 139
           L G  V+ I+ G  H    T+DG +Y WG N+ GQ+G        +  P  ++  +    
Sbjct: 314 LQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNA--IQRPRLVAALQGK-- 369

Query: 140 QNIKVVDVACGSRHTLALCD 159
              KV  VACGS HTLA   
Sbjct: 370 ---KVNRVACGSAHTLAWST 386

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389

 Score = 90.8 bits (226), Expect = 2e-21
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 7/90 (7%)

Query: 85  VVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
                + G  +      G +Y WG N+ GQ+G        V  P P           ++ 
Sbjct: 3   HHHHHSSGRENLYFQGSGTIYGWGHNHRGQLGGIEGAK--VKVPTPCEALA-----TLRP 55

Query: 145 VDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
           V +  G +   A+  D  L+  G+    +L
Sbjct: 56  VQLIGGEQTLFAVTADGKLYATGYGAGGRL 85

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  139 bits (352), Expect = 3e-39
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 18/170 (10%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDAN---------MEPREIRALS 81
              IA G DH + LT  G VF+ G   +GQLG  S  + +          + P ++    
Sbjct: 181 CCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITR 240

Query: 82  GLGVVQISAGGWHSAART-QDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQ 140
                 I A  + +  R  Q   ++A G NN  Q+  E K         P        ++
Sbjct: 241 AKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFA--LTP------IKTE 292

Query: 141 NIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLS 190
              +  +A G  HT+ L  D      G  EY +L +G     V   T + 
Sbjct: 293 LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVK 342

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  137 bits (347), Expect = 2e-38
 Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 10/149 (6%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
              IA   +     T  G V   GNG  GQLG    G D     R          V ISA
Sbjct: 26  RARIAFHLELPKRRTVLGNVLVCGNGDVGQLGL---GEDILERKRLSPVAGIPDAVDISA 82

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           GG H+   T+ G +Y++G N+ G +G +   D     P  +           K + ++ G
Sbjct: 83  GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG-------KALCISAG 135

Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMGCG 179
             H+  L +D  ++  G    +  +MG  
Sbjct: 136 DSHSACLLEDGRVFAWGSFRDSHGNMGLT 164

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  132 bits (334), Expect = 1e-36
 Identities = 32/169 (18%), Positives = 59/169 (34%), Gaps = 11/169 (6%)

Query: 7   SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQE-GIVFSWGNGSRGQLGYPS 65
           SG  +   +    P+++          I            +  ++++ G  +  QL + +
Sbjct: 220 SGEGRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHET 279

Query: 66  SGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVV 125
                      I+      +  I+ G  H+   T D      G    G++G+ G +  VV
Sbjct: 280 --KGKEFALTPIKTE-LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGL-GDVKDVV 335

Query: 126 HDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQL 174
             P  +    +      K+V V CG   + A+  D  L+  G    NQL
Sbjct: 336 EKPTIVKKLTE------KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQL 378

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  127 bits (321), Expect = 9e-35
 Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNG--SRGQLGYPSSGTDANMEPREIRALSGLGVVQI 88
              I+ G  H   L ++G VF+WG+   S G +G      D N +   I  + G     I
Sbjct: 129 ALCISAGDSHSACLLEDGRVFAWGSFRDSHGNMGL---TIDGN-KRTPIDLMEGTVCCSI 184

Query: 89  SAGGWHSAARTQDGFLYAWGWNNGGQVG----VEGKLDLVVHDPHPMSWSEDFDSQNIKV 144
           ++G  H    T  G ++  G    GQ+G         +        +  ++   ++    
Sbjct: 185 ASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPF 244

Query: 145 VDVACGSRHTLALCDDNS-LWGCGWNEYNQL 174
             +   +  T         +W  G N + QL
Sbjct: 245 EAIWATNYCTFMRESQTQVIWATGLNNFKQL 275

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score =  123 bits (310), Expect = 4e-33
 Identities = 33/131 (25%), Positives = 55/131 (41%), Gaps = 7/131 (5%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           +  IA G  H + LT +      G    G+LG      D   +P  ++ L+   +V +  
Sbjct: 296 IRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDV-KDVVEKPTIVKKLTE-KIVSVGC 353

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           G   S A T DG LY+WG     Q+GV    D    +P  +      ++Q   ++  + G
Sbjct: 354 GEVCSYAVTIDGKLYSWGSGVNNQLGVGDGDD--ELEPIVVVSK---NTQGKHMLLASGG 408

Query: 151 SRHTLALCDDN 161
            +H + L   +
Sbjct: 409 GQHAIFLVKAD 419

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 95.1 bits (237), Expect = 6e-23
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 14/121 (11%)

Query: 54  GNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGG 113
           G+  R  L       + N      +        +I+        RT  G +   G  + G
Sbjct: 1   GSPRRKALT------NNNNAGEAEQQPPKAKRARIAFHLELPKRRTVLGNVLVCGNGDVG 54

Query: 114 QVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ 173
           Q+G+ G+  L      P++   D        VD++ G  H L L     ++  G N+   
Sbjct: 55  QLGL-GEDILERKRLSPVAGIPD-------AVDISAGGMHNLVLTKSGDIYSFGCNDEGA 106

Query: 174 L 174
           L
Sbjct: 107 L 107

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 7/54 (12%), Positives = 18/54 (33%)

Query: 143 KVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
           K   +A             ++  CG  +  QL +G  + +   ++ ++      
Sbjct: 25  KRARIAFHLELPKRRTVLGNVLVCGNGDVGQLGLGEDILERKRLSPVAGIPDAV 78

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score =  105 bits (263), Expect = 2e-27
 Identities = 38/155 (24%), Positives = 55/155 (35%), Gaps = 36/155 (23%)

Query: 30  VVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQIS 89
            VT +  G    LA+   G V +WG+   GQ   P+                  GV  ++
Sbjct: 142 GVTALDGGVYTALAVK-NGGVIAWGDNYFGQTTVPAEAQS--------------GVDDVA 186

Query: 90  AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVAC 149
            G +HS A   DG + AWG N   Q  V            P             V  +A 
Sbjct: 187 GGIFHSLALK-DGKVIAWGDNRYKQTTV------------PTEALSG-------VSAIAS 226

Query: 150 GSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVS 184
           G  ++LAL  +  +   G +     S+  GVS + 
Sbjct: 227 GEWYSLAL-KNGKVIAWGSSRTAPSSVQSGVSSIE 260

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score =  103 bits (260), Expect = 6e-27
 Identities = 41/147 (27%), Positives = 55/147 (37%), Gaps = 36/147 (24%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V  IA G+ H LAL   G V  WG    GQL  P++                 GV  I+A
Sbjct: 26  VDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAATQS--------------GVDAIAA 70

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           G +HS A   DG + AWG N  GQ  V  +                       V  +A G
Sbjct: 71  GNYHSLALK-DGEVIAWGGNEDGQTTVPAEA-------------------RSGVDAIAAG 110

Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMG 177
           +  + AL  D  +   G +   Q ++ 
Sbjct: 111 AWASYAL-KDGKVIAWGDDSDGQTTVP 136

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score =  102 bits (256), Expect = 2e-26
 Identities = 43/158 (27%), Positives = 59/158 (37%), Gaps = 40/158 (25%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V  IA G     AL  +G V +WG+ S GQ   P+                    V    
Sbjct: 104 VDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEA---------------QSGVTALD 147

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           GG ++A   ++G + AWG N  GQ  V  +                       V DVA G
Sbjct: 148 GGVYTALAVKNGGVIAWGDNYFGQTTVPAEA-------------------QSGVDDVAGG 188

Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMG----CGVSQVS 184
             H+LAL  D  +   G N Y Q ++      GVS ++
Sbjct: 189 IFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIA 225

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score =  101 bits (253), Expect = 7e-26
 Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 36/145 (24%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V  IA G  H LAL  +G V +WG    GQ   P+                  GV  I+A
Sbjct: 65  VDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARS--------------GVDAIAA 109

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           G W S A  +DG + AWG ++ GQ  V  +                       V  +  G
Sbjct: 110 GAWASYA-LKDGKVIAWGDDSDGQTTVPAEA-------------------QSGVTALDGG 149

Query: 151 SRHTLALCDDNSLWGCGWNEYNQLS 175
               LA+  +  +   G N + Q +
Sbjct: 150 VYTALAV-KNGGVIAWGDNYFGQTT 173

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 42/143 (29%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V D+A G  H LAL  +G V +WG+    Q   P+                  GV  I++
Sbjct: 182 VDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTEALS--------------GVSAIAS 226

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
           G W+S A   +G + AWG +      V+                         V  +  G
Sbjct: 227 GEWYSLALK-NGKVIAWGSSRTAPSSVQS-----------------------GVSSIEAG 262

Query: 151 SRHTLALCDDNSLWGCGWNEYNQ 173
                AL   +   G G + ++ 
Sbjct: 263 PNAAYALKGGS---GSGHHHHHH 282

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 38/141 (26%)

Query: 48  GIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAW 107
             V +WG  +                   + A +  GV  I+ G +H  A    G +  W
Sbjct: 2   TSVVAWGGNNDWGEA-------------TVPAEAQSGVDAIAGGYFHGLALK-GGKVLGW 47

Query: 108 GWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCG 167
           G N  GQ+ +                          V  +A G+ H+LAL  D  +   G
Sbjct: 48  GANLNGQLTMPAATQS-------------------GVDAIAAGNYHSLAL-KDGEVIAWG 87

Query: 168 WNEYNQLSMGC----GVSQVS 184
            NE  Q ++      GV  ++
Sbjct: 88  GNEDGQTTVPAEARSGVDAIA 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	241
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	100.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	100.0
4d9s_A	406	UVB-resistance protein UVR8; UV resistance, UV-B p	100.0
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	100.0
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	100.0
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	100.0
3of7_A	473	Regulator of chromosome condensation; beta-propell	100.0
1a12_A	413	RCC1, regulator of chromosome condensation 1; guan	100.0
3of7_A	473	Regulator of chromosome condensation; beta-propell	100.0
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	100.0
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	100.0
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	100.0
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	97.12
4gbf_A	400	Phikz131; 7-bladed beta-propeller, possibly partic	96.95
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	83.17
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	83.03
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	81.94
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	80.93

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=100.00  E-value=4.5e-40  Score=289.13  Aligned_cols=211  Identities=30%  Similarity=0.542  Sum_probs=182.3

Q ss_pred             eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeE
Q psy1607          16 VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHS   95 (241)
Q Consensus        16 ~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s   95 (241)
                      ....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+...  ....|.++..+.+.+|++|+||.+|+
T Consensus       108 ~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~~~~~~i~~va~G~~hs  185 (406)
T 4d9s_A          108 DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTE--DSLVPQKIQAFEGIRIKMVAAGAEHT  185 (406)
T ss_dssp             CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCC--CEEEEEECGGGTTCCEEEEEECSSEE
T ss_pred             ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCC--CcccceEecccCCCcEEEEecCCCeE
Confidence            3457888888888999999999999999999999999999999999999877  67889999988889999999999999


Q ss_pred             EEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607          96 AARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS  175 (241)
Q Consensus        96 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG  175 (241)
                      ++|+++|+||+||.|.+||||.+.....  ..|.++...     ...+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus       186 ~alt~~G~v~~wG~n~~GqlG~g~~~~~--~~p~~v~~~-----~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG  258 (406)
T 4d9s_A          186 AAVTEDGDLYGWGWGRYGNLGLGDRTDR--LVPERVTST-----GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG  258 (406)
T ss_dssp             EEEETTSCEEEEECCTTSTTCSSSSCCE--EEEEECCCS-----TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTC
T ss_pred             EEEeCCCCEEEeeCCCCCCCCCCCCCCc--CccEEeccc-----CCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCC
Confidence            9999999999999999999999877653  456666544     456899999999999999999999999999999999


Q ss_pred             CCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC----------------------------CCCceeEE
Q psy1607         176 MGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------------------KDSSIVKL  227 (241)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------------------~~~~~~~~  227 (241)
                      +++.. ....|.++..+   .+.+|++|+||.+|+++|+.++..                            ....+.+|
T Consensus       259 ~g~~~-~~~~p~~v~~~---~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v  334 (406)
T 4d9s_A          259 HGDLE-DHLIPHKLEAL---SNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCSPVQVRFPDDQKVVQV  334 (406)
T ss_dssp             SSSCC-CEEEEEECGGG---TTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSSCEEEEEEECCGGGCCEEEE
T ss_pred             CCCCc-CccccEEeccc---CCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCCCCCCccCEEEeccCCCcEEEE
Confidence            98763 45566666544   345699999999999999988422                            12357789


Q ss_pred             ecccccceeeee
Q psy1607         228 FAGHWNSGILVQ  239 (241)
Q Consensus       228 ~~~~~~s~~~~~  239 (241)
                      .+|.+++.+|+.
T Consensus       335 a~G~~hs~alt~  346 (406)
T 4d9s_A          335 SCGWRHTLAVTE  346 (406)
T ss_dssp             EECSSEEEEEET
T ss_pred             EeCCCeEEEEeC
Confidence            999999999875

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=100.00  E-value=3.3e-40  Score=288.52  Aligned_cols=212  Identities=22%  Similarity=0.404  Sum_probs=182.6

Q ss_pred             eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCC--C
Q psy1607          16 VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGG--W   93 (241)
Q Consensus        16 ~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~--~   93 (241)
                      ....|++++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+...  ....|.++..+.+.+|++|+||.  .
T Consensus       146 ~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~--~~~~p~~v~~~~~~~v~~ia~G~g~~  223 (389)
T 3kci_A          146 PCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSE--DQLKPKLVEALQGHRVVDIACGSGDA  223 (389)
T ss_dssp             CEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCC--CEEEEEECGGGTTSCEEEEEECCSSC
T ss_pred             cCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCc--ccccceEecccCCCeEEEEEEcCCCc
Confidence            3467888988888999999999999999999999999999999999999877  77889999999999999999995  8


Q ss_pred             eEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607          94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ  173 (241)
Q Consensus        94 ~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq  173 (241)
                      |+++|+++|+||+||.|.+||||.+....  ...|.+++.+     .+.+|++|+||.+|+++|+++|+||+||.|.+||
T Consensus       224 ~t~~l~~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~-----~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~Gq  296 (389)
T 3kci_A          224 QTLCLTDDDTVWSWGDGDYGKLGRGGSDG--CKVPMKIDSL-----TGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHR  296 (389)
T ss_dssp             EEEEEETTTEEEEEECCGGGTTSSSSCCC--EEEEEECGGG-----TTSCEEEEEEETTEEEEEETTSCEEEEECCGGGT
T ss_pred             EEEEEccCCEEEEEeCCCCCCCCCCCCCC--ccccEEeccc-----CCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCC
Confidence            99999999999999999999999987654  3567777655     4568999999999999999999999999999999


Q ss_pred             ccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC----------------------------CCCcee
Q psy1607         174 LSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------------------KDSSIV  225 (241)
Q Consensus       174 lG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------------------~~~~~~  225 (241)
                      ||++.. .....|+++..+   .+.+|++|+||.+|+++|+.++..                            ....+.
T Consensus       297 LG~g~~-~~~~~P~~v~~l---~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~~~~~v~  372 (389)
T 3kci_A          297 LGHGSD-DHVRRPRQVQGL---QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVN  372 (389)
T ss_dssp             TCSSSC-CCEEEEEECGGG---TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCCC
T ss_pred             CCCCCC-ccccCCeEeccC---CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEecccCCCCEE
Confidence            999876 445667766644   345699999999999999998321                            133577


Q ss_pred             EEecccccceeeeec
Q psy1607         226 KLFAGHWNSGILVQS  240 (241)
Q Consensus       226 ~~~~~~~~s~~~~~~  240 (241)
                      ++.+|.++|.+|+.+
T Consensus       373 ~va~G~~ht~al~~~  387 (389)
T 3kci_A          373 RVACGSAHTLAWSTS  387 (389)
T ss_dssp             EEEEETTEEEEECC-
T ss_pred             EEEecCCcEEEEecC
Confidence            899999999999764

>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A

Probab=100.00  E-value=1.3e-39  Score=286.25  Aligned_cols=210  Identities=28%  Similarity=0.477  Sum_probs=180.5

Q ss_pred             EecCeeeeccCCccEEEEecCCCEEEEEECCC-cEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeE
Q psy1607          17 FHMPSRMDHFLDLVVTDIACGFDHCLALTQEG-IVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHS   95 (241)
Q Consensus        17 ~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g-~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s   95 (241)
                      ...|.+++.+.+.+|++|+||..|+++|++++ +||+||.|.+||||.+...  ....|.++..+.+.+|++|+||..|+
T Consensus        56 ~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~l~~~~i~~ia~G~~h~  133 (406)
T 4d9s_A           56 RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS--DLFTPLPIKALHGIRIKQIACGDSHC  133 (406)
T ss_dssp             EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCC--CEEEEEECGGGTTCCEEEEEECSSEE
T ss_pred             CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCC--ccccceEecccCCCCEEEEEEChhhe
Confidence            45788888888889999999999999999886 9999999999999998876  77889999988989999999999999


Q ss_pred             EEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607          96 AARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS  175 (241)
Q Consensus        96 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG  175 (241)
                      ++|+++|+||+||.|.+||||.+....  ...|.++..+     .+.+|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus       134 ~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~p~~v~~~-----~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG  206 (406)
T 4d9s_A          134 LAVTMEGEVQSWGRNQNGQLGLGDTED--SLVPQKIQAF-----EGIRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLG  206 (406)
T ss_dssp             EEEETTSCEEEEECCTTSTTCSSSCCC--EEEEEECGGG-----TTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTC
T ss_pred             EEEcCCCcEEEeCCCCCccCCCCCCCC--cccceEeccc-----CCCcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCC
Confidence            999999999999999999999987665  3467777655     456899999999999999999999999999999999


Q ss_pred             CCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC----------------------------CCCceeEE
Q psy1607         176 MGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------------------KDSSIVKL  227 (241)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------------------~~~~~~~~  227 (241)
                      ++...+ ...|.++..+   .+.+|++|+||.+|+++|+.++..                            ....+.+|
T Consensus       207 ~g~~~~-~~~p~~v~~~---~~~~i~~va~G~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i  282 (406)
T 4d9s_A          207 LGDRTD-RLVPERVTST---GGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQI  282 (406)
T ss_dssp             SSSSCC-EEEEEECCCS---TTCCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEE
T ss_pred             CCCCCC-cCccEEeccc---CCceEEEEEECCCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEE
Confidence            987643 4456665433   345699999999999999988422                            12347889


Q ss_pred             ecccccceeeee
Q psy1607         228 FAGHWNSGILVQ  239 (241)
Q Consensus       228 ~~~~~~s~~~~~  239 (241)
                      .+|..++.+|+.
T Consensus       283 ~~G~~hs~alt~  294 (406)
T 4d9s_A          283 SGGWRHTMALTS  294 (406)
T ss_dssp             EECSSEEEEEET
T ss_pred             EecCCEEEEEcC
Confidence            999999999875

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-39  Score=282.89  Aligned_cols=188  Identities=28%  Similarity=0.427  Sum_probs=165.4

Q ss_pred             eEecCeeeeccCCccEEEEecCC--CEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCC
Q psy1607          16 VFHMPSRMDHFLDLVVTDIACGF--DHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW   93 (241)
Q Consensus        16 ~~~~p~~i~~~~~~~i~~i~~G~--~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~   93 (241)
                      ....|++++.+.+.+|++|+||.  .|+++|+++|+||+||.|.+||||.+...  ....|.++..+.+.+|++|+||.+
T Consensus       198 ~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~--~~~~p~~v~~~~~~~v~~v~~G~~  275 (389)
T 3kci_A          198 DQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSD--GCKVPMKIDSLTGLGVVKVECGSQ  275 (389)
T ss_dssp             CEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCC--CEEEEEECGGGTTSCEEEEEEETT
T ss_pred             ccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCC--CccccEEecccCCCcEEEEeCCCC
Confidence            34578889889999999999995  99999999999999999999999999876  778899999888889999999999


Q ss_pred             eEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCc
Q psy1607          94 HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQ  173 (241)
Q Consensus        94 ~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gq  173 (241)
                      |+++|+++|+||+||.|.++|||.+....  ...|+++..+     .+.+|++|+||.+|+++++++|+||+||.|.+||
T Consensus       276 hs~alt~~G~v~~wG~n~~GqLG~g~~~~--~~~P~~v~~l-----~~~~v~~ia~G~~h~~al~~~G~v~~wG~n~~Gq  348 (389)
T 3kci_A          276 FSVALTKSGAVYTWGKGDYHRLGHGSDDH--VRRPRQVQGL-----QGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQ  348 (389)
T ss_dssp             EEEEEETTSCEEEEECCGGGTTCSSSCCC--EEEEEECGGG-----TTCCEEEEEECSSEEEEEETTCCEEEEECCTTST
T ss_pred             EEEEEeCCCeEEEEeCCCCCCCCCCCCcc--ccCCeEeccC-----CCCCEEEEEeccCeEEEECCCCCEEEeeCCCCCc
Confidence            99999999999999999999999987654  4567777655     4568999999999999999999999999999999


Q ss_pred             ccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecC
Q psy1607         174 LSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVP  216 (241)
Q Consensus       174 lG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~  216 (241)
                      ||.+... ....|+.+..+   .+.+|++|+||.+||++|+.+
T Consensus       349 LG~g~~~-~~~~P~~v~~~---~~~~v~~va~G~~ht~al~~~  387 (389)
T 3kci_A          349 LGDGTTN-AIQRPRLVAAL---QGKKVNRVACGSAHTLAWSTS  387 (389)
T ss_dssp             TCSSSCC-CEEEEEECGGG---TTSCCCEEEEETTEEEEECC-
T ss_pred             CCCCCCC-CccCcEEeccc---CCCCEEEEEecCCcEEEEecC
Confidence            9998763 45667776544   345699999999999999875

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=100.00  E-value=1.1e-38  Score=280.70  Aligned_cols=223  Identities=20%  Similarity=0.333  Sum_probs=178.3

Q ss_pred             CCCCccccCcee---------------EecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCC
Q psy1607           5 LASGPLKMLSQV---------------FHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD   69 (241)
Q Consensus         5 ~~~g~l~~~g~~---------------~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~   69 (241)
                      -.+|+++.||..               ...|.++  +...+|++|+||.+|+++|+++|+||+||.|.+||||.+.....
T Consensus       127 t~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~  204 (413)
T 1a12_A          127 TDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFA  204 (413)
T ss_dssp             ETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTS
T ss_pred             cCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEecCceEEEEcCCCCEEEeeCCCCCccCCCccccc
Confidence            356777777752               1235555  56678999999999999999999999999999999998754211


Q ss_pred             ---------CCccCeEeeec-----CCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccc
Q psy1607          70 ---------ANMEPREIRAL-----SGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSE  135 (241)
Q Consensus        70 ---------~~~~p~~v~~~-----~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~  135 (241)
                               ....|..+...     ...+|++|+||.+|+++|+++|+||+||.|.+||||.+....  ...|..+..+.
T Consensus       205 ~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~~--~~~P~~v~~l~  282 (413)
T 1a12_A          205 NRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTES--CFIPQNLTSFK  282 (413)
T ss_dssp             SSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSC--EEEEEECGGGC
T ss_pred             cccccccccccccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCCc--ccccEEchhcc
Confidence                     12456555543     446899999999999999999999999999999999987655  35677776541


Q ss_pred             cCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEec
Q psy1607         136 DFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSV  215 (241)
Q Consensus       136 ~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~  215 (241)
                      .   ...+|++|+||.+|+++|+++|+||+||.|.+||||++........|++++.+.     +|++|+||.+|+++|+.
T Consensus       283 ~---~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P~~v~~l~-----~v~~v~~G~~hs~alt~  354 (413)
T 1a12_A          283 N---STKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRLP-----AVSSVACGASVGYAVTK  354 (413)
T ss_dssp             C---TTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSSS-----SEEEEEECSSEEEEEET
T ss_pred             C---CCceEEEEecccceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCCEEecccC-----ceeEEEECcceEEEEeC
Confidence            1   225699999999999999999999999999999999986556677787776543     59999999999999999


Q ss_pred             CCCC------------------------------CCCceeEEecccccceeeee
Q psy1607         216 PEHA------------------------------KDSSIVKLFAGHWNSGILVQ  239 (241)
Q Consensus       216 ~~~~------------------------------~~~~~~~~~~~~~~s~~~~~  239 (241)
                      ++..                              ....+..+.+|.++|.+|+.
T Consensus       355 ~G~v~~wG~n~~gqLG~g~~~~~~~P~~v~~~~~~~~~v~~v~~G~~ht~~l~~  408 (413)
T 1a12_A          355 DGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK  408 (413)
T ss_dssp             TSCEEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEE
T ss_pred             CCCEEEecCCCCCCCCCCCCCCcccCeEccccccCCCeEEEEeeCCCcEEEEEe
Confidence            8321                              11347789999999999875

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=2e-38  Score=279.81  Aligned_cols=224  Identities=23%  Similarity=0.230  Sum_probs=184.6

Q ss_pred             CCCCccccCce------------eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCC-----
Q psy1607           5 LASGPLKMLSQ------------VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSG-----   67 (241)
Q Consensus         5 ~~~g~l~~~g~------------~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~-----   67 (241)
                      -.+|+++.||.            ....|.++..+...+|++|+||.+|+++|+++|+||+||.|.+||||.+...     
T Consensus       143 ~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~  222 (423)
T 3mvd_K          143 LEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGE  222 (423)
T ss_dssp             ETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSC
T ss_pred             eCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccc
Confidence            35666666664            1123556667788899999999999999999999999999999999997643     


Q ss_pred             ----CCCCccCeEeeecCCCCeEEEEcCCCeEEEE-EcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCC
Q psy1607          68 ----TDANMEPREIRALSGLGVVQISAGGWHSAAR-TQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNI  142 (241)
Q Consensus        68 ----~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~l-t~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~  142 (241)
                          ......|.++......+|++|+||.+|++++ +++|+||+||.|.++|||.+.........|.++.+        .
T Consensus       223 ~~~~~~~~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~--------~  294 (423)
T 3mvd_K          223 GRRGKRDLLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTEL--------K  294 (423)
T ss_dssp             STTTTTTTSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECC--------C
T ss_pred             cccccccccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCC--------C
Confidence                1245688888887888999999999999999 59999999999999999997665555556666552        4


Q ss_pred             cEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCCC---
Q psy1607         143 KVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA---  219 (241)
Q Consensus       143 ~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~---  219 (241)
                      +|++|+||.+|+++|+++|+||+||.|.+||||++...+....|.+++.+..    +|++|+||.+|+++|+.++..   
T Consensus       295 ~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~----~v~~ia~G~~hs~alt~~G~v~~w  370 (423)
T 3mvd_K          295 DIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTE----KIVSVGCGEVCSYAVTIDGKLYSW  370 (423)
T ss_dssp             SEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCS----CEEEEEEETTEEEEEETTSCEEEE
T ss_pred             CeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCC----CEEEEEcCCCeEEEEcCCCCEEEE
Confidence            7999999999999999999999999999999999987666677777765543    699999999999999988311   


Q ss_pred             ---------------------------CCCceeEEecccccceeeeec
Q psy1607         220 ---------------------------KDSSIVKLFAGHWNSGILVQS  240 (241)
Q Consensus       220 ---------------------------~~~~~~~~~~~~~~s~~~~~~  240 (241)
                                                 ....+.++.+|.+++.+|+..
T Consensus       371 G~n~~GqLG~g~~~~~~~P~~v~~~~~~~~~v~~va~G~~ht~~l~~~  418 (423)
T 3mvd_K          371 GSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIFLVKA  418 (423)
T ss_dssp             ECCTTSCSSSSSSCCEEEEEECCSTTTTTCCEEEEEECSSEEEEEEEC
T ss_pred             CCCCCCCCCCCCCCCcccCeEEeCcccCCCEEEEEEECCCcEEEEEcc
Confidence                                       123478899999999999864

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-38  Score=282.57  Aligned_cols=222  Identities=27%  Similarity=0.421  Sum_probs=175.5

Q ss_pred             CCCCccccCce----------------eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCC
Q psy1607           5 LASGPLKMLSQ----------------VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGT   68 (241)
Q Consensus         5 ~~~g~l~~~g~----------------~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~   68 (241)
                      -.+|+++.||.                ....|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+....
T Consensus       164 t~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~  243 (473)
T 3of7_A          164 FSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMER  243 (473)
T ss_dssp             ETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCCGG
T ss_pred             eCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEecCCeEEEEeCCCeEEEEeCCCCCCCCCCcccc
Confidence            45677777764                34578888888888999999999999999999999999999999999986541


Q ss_pred             --CCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCC--ceeeCCccccccccCCCCCCcE
Q psy1607          69 --DANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLD--LVVHDPHPMSWSEDFDSQNIKV  144 (241)
Q Consensus        69 --~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~--~~~~~p~~v~~~~~~~~~~~~i  144 (241)
                        .....|.++..   .+|++|+||.+|+++|+++|+||+||.|.+||||.+....  .....|.++..+     .+.+|
T Consensus       244 ~~~~~~~p~~~~~---~~v~~Ia~G~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~~-----~~~~i  315 (473)
T 3of7_A          244 FRLKTLDPRPFGL---RHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLALP-----DNVVI  315 (473)
T ss_dssp             GTTTTCSCEECSC---CSEEEEEECSSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCCC-----TTCCE
T ss_pred             ccccccCceecCC---cceEEEecCCCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCceeecccccccc-----CCccE
Confidence              12445666542   5799999999999999999999999999999999887543  234567777755     45689


Q ss_pred             EEEEccCCceEEEecCCcEEEEecCCCCcccCCCCC-----------Cc--eecceEecccccccCcCeeEEeccCCeeE
Q psy1607         145 VDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGV-----------SQ--VSVMTRLSVPEHVKNCPIVKLFAEHWNSA  211 (241)
Q Consensus       145 ~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~-----------~~--~~~~~~~~~~~~~~~~~i~~vacG~~~s~  211 (241)
                      ++|+||.+|+++|+++|+||+||.|.+||||.+...           ..  ...|..+.   ...  +|++|+||.+|++
T Consensus       316 ~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~P~~v~---~~~--~v~~Ia~G~~hs~  390 (473)
T 3of7_A          316 RSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKDVHGKARAVPLPTKLN---NVP--KFKSVAAGSHHSV  390 (473)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEECTTSCEEEEEEEEECC---SSC--CEEEEEECSSEEE
T ss_pred             EEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccccCCceeeeccCcccC---CCC--ceEEEEeCCCeEE
Confidence            999999999999999999999999999999987531           11  12233222   111  6999999999999


Q ss_pred             EEecCCCC-------------------------------CCCceeEEecccccceeeee
Q psy1607         212 RLSVPEHA-------------------------------KDSSIVKLFAGHWNSGILVQ  239 (241)
Q Consensus       212 ~lt~~~~~-------------------------------~~~~~~~~~~~~~~s~~~~~  239 (241)
                      +|+.++..                               ....+..+.+|.++|.++..
T Consensus       391 al~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~~~~~~v~~v~cG~~~s~~~~~  449 (473)
T 3of7_A          391 AVAQNGIAYSWGFGETYAVGLGPFEDDTEVPTRIKNTATQDHNIILVGCGGQFSVSGGV  449 (473)
T ss_dssp             EEETTSCEEEEECCTTCTTCCCSCCSCEEEEEECCCTTTTTEEEEEEEECSSEEEEEEE
T ss_pred             EEeCCCcEEEeeCCCCCCCCCCCCCccccCCeEecccccCCCeEEEEeeCCCeEEEEEe
Confidence            99988311                               11236778999999998875

>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B

Probab=100.00  E-value=3.3e-38  Score=277.78  Aligned_cols=188  Identities=20%  Similarity=0.296  Sum_probs=161.3

Q ss_pred             ecCeeeecc-----CCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCC--CCeEEEEc
Q psy1607          18 HMPSRMDHF-----LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSG--LGVVQISA   90 (241)
Q Consensus        18 ~~p~~i~~~-----~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~--~~i~~I~~   90 (241)
                      ..|+.+..+     ...+|++|+||.+|+++|+++|+||+||.|.+||||.+...  ....|..+..+.+  .+|++|+|
T Consensus       216 ~~P~~v~~~~~g~~~~~~i~~ia~G~~hs~alt~~G~v~~wG~n~~gqLG~~~~~--~~~~P~~v~~l~~~~~~v~~ia~  293 (413)
T 1a12_A          216 LVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE--SCFIPQNLTSFKNSTKSWVGFSG  293 (413)
T ss_dssp             HSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS--CEEEEEECGGGCCTTCCEEEEEE
T ss_pred             ccCceEeeccccccCCccEEEEEeCCCEEEEEeCCCCEEEEeCCCCcCCCCCCCC--cccccEEchhccCCCceEEEEec
Confidence            456666654     45789999999999999999999999999999999998876  6788999888876  67999999


Q ss_pred             CCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCC
Q psy1607          91 GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNE  170 (241)
Q Consensus        91 G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~  170 (241)
                      |.+|+++|+++|+||+||.|.+||||.+..... ...|+++..+       .+|++|+||.+|+++|+++|+||+||.|.
T Consensus       294 G~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~-~~~P~~v~~l-------~~v~~v~~G~~hs~alt~~G~v~~wG~n~  365 (413)
T 1a12_A          294 GQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEE-KSIPTLISRL-------PAVSSVACGASVGYAVTKDGRVFAWGMGT  365 (413)
T ss_dssp             CSSEEEEEETTSCEEEEECCGGGTTCSCTTCCC-EEEEEECCSS-------SSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred             ccceEEEEeCCCCEEEeeCCCCCccCCCCCCcc-ccCCEEeccc-------CceeEEEECcceEEEEeCCCCEEEecCCC
Confidence            999999999999999999999999998854432 4567777655       38999999999999999999999999999


Q ss_pred             CCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         171 YNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       171 ~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                      +||||.+.. .....|.++... .+.+.+|++|+||.+|+++|+.++
T Consensus       366 ~gqLG~g~~-~~~~~P~~v~~~-~~~~~~v~~v~~G~~ht~~l~~~g  410 (413)
T 1a12_A          366 NYQLGTGQD-EDAWSPVEMMGK-QLENRVVLSVSSGGQHTVLLVKDK  410 (413)
T ss_dssp             TSTTCSSSC-SCEEEEEECCST-TTTTEEEEEEEECSSEEEEEEEEC
T ss_pred             CCCCCCCCC-CCcccCeEcccc-ccCCCeEEEEeeCCCcEEEEEecC
Confidence            999999886 446667776632 234567999999999999999875

>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-37  Score=278.58  Aligned_cols=211  Identities=26%  Similarity=0.395  Sum_probs=172.9

Q ss_pred             ecCeeeec--c----CCccEEEEecCCCEEEEEECCCcEEEEeC--CCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEE
Q psy1607          18 HMPSRMDH--F----LDLVVTDIACGFDHCLALTQEGIVFSWGN--GSRGQLGYPSSGTDANMEPREIRALSGLGVVQIS   89 (241)
Q Consensus        18 ~~p~~i~~--~----~~~~i~~i~~G~~h~~~lt~~g~v~~~G~--n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~   89 (241)
                      ..|.+++.  +    .+.+|++|+||.+|+++|+++|+||+||.  +.+||||...........|.++..+.+.+|++|+
T Consensus       131 ~~P~~v~~~~l~~~~~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va  210 (473)
T 3of7_A          131 STPAKIPRESFPPLAEGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLA  210 (473)
T ss_dssp             HSCEECCGGGCHHHHTTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEE
T ss_pred             cCceecccccCCcccCCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEE
Confidence            46777774  4    46899999999999999999999999998  6799999866544466788888888888999999


Q ss_pred             cCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCce--eeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEe
Q psy1607          90 AGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLV--VHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCG  167 (241)
Q Consensus        90 ~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~--~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG  167 (241)
                      ||.+|+++|+++|+||+||.|.+||||.+......  ...|.++.+        .+|++|+||.+|+++|+++|+||+||
T Consensus       211 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~--------~~v~~Ia~G~~hs~alt~~G~v~~wG  282 (473)
T 3of7_A          211 PGKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGL--------RHVKYIASGENHCFALTKDNKLVSWG  282 (473)
T ss_dssp             ECSSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSC--------CSEEEEEECSSEEEEEETTSCEEEEE
T ss_pred             ecCCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCC--------cceEEEecCCCeEEEEecCCCEEEeC
Confidence            99999999999999999999999999987654321  234555543        48999999999999999999999999


Q ss_pred             cCCCCcccCCCCC---CceecceEecccccccCcCeeEEeccCCeeEEEecCCCC-----------C-------------
Q psy1607         168 WNEYNQLSMGCGV---SQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEHA-----------K-------------  220 (241)
Q Consensus       168 ~n~~gqlG~~~~~---~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~~-----------~-------------  220 (241)
                      .|.+||||.+...   .....|+++..+   .+.+|++|+||.+|+++|+.++..           .             
T Consensus       283 ~n~~GqlG~~~~~~~~~~~~~P~~v~~~---~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~  359 (473)
T 3of7_A          283 LNQFGQCGVSEDVEDGALVTKPKRLALP---DNVVIRSIAAGEHHSLILSQDGDLYSCGRLDMFEVGIPKDNLPEYTYKD  359 (473)
T ss_dssp             ECTTSTTCCCSCCCTTCEEEEEEECCCC---TTCCEEEEEECSSEEEEEETTSCEEEEEECTTCTTCCCGGGCCTTCEEC
T ss_pred             CCCCCCcCCCCcccCCceeecccccccc---CCccEEEEEeCCCeEEEEeCCCeEEEEECCCCCccCCCccccccccccc
Confidence            9999999998754   234556666544   345699999999999999988422           0             


Q ss_pred             ----------------CCceeEEecccccceeeee
Q psy1607         221 ----------------DSSIVKLFAGHWNSGILVQ  239 (241)
Q Consensus       221 ----------------~~~~~~~~~~~~~s~~~~~  239 (241)
                                      ...+..|.+|.+++.+|+.
T Consensus       360 ~~~~~~~~~~P~~v~~~~~v~~Ia~G~~hs~al~~  394 (473)
T 3of7_A          360 VHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQ  394 (473)
T ss_dssp             TTSCEEEEEEEEECCSSCCEEEEEECSSEEEEEET
T ss_pred             cCCceeeeccCcccCCCCceEEEEeCCCeEEEEeC
Confidence                            0157789999999999875

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=100.00  E-value=5.2e-37  Score=270.83  Aligned_cols=190  Identities=18%  Similarity=0.183  Sum_probs=159.9

Q ss_pred             EecCeeeeccCCccEEEEecCCCEEEEE-ECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeE
Q psy1607          17 FHMPSRMDHFLDLVVTDIACGFDHCLAL-TQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHS   95 (241)
Q Consensus        17 ~~~p~~i~~~~~~~i~~i~~G~~h~~~l-t~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s   95 (241)
                      ...|.++..+...+|++|+||.+|++++ +++|+||+||.|.++|||.+.........|.++.   ..+|++|+||.+|+
T Consensus       230 ~~~p~~v~~~~~~~v~~i~~g~~~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~---~~~v~~ia~G~~ht  306 (423)
T 3mvd_K          230 LLRPTQLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTE---LKDIRHIAGGQHHT  306 (423)
T ss_dssp             TSSCEEECCTTCCCEEEEEEETTEEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEEC---CCSEEEEEECSSEE
T ss_pred             ccCCeEEeecCCccEEEEEECCcEEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcC---CCCeEEEEcccCeE
Confidence            3478888888888999999999999999 6999999999999999999766534455565554   45799999999999


Q ss_pred             EEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607          96 AARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLS  175 (241)
Q Consensus        96 ~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG  175 (241)
                      ++|+++|+||+||.|.+||||.+..... ...|.++..+     .. +|++|+||.+|+++|+++|+||+||.|.+||||
T Consensus       307 ~alt~~G~v~~wG~n~~GqLG~g~~~~~-~~~p~~v~~l-----~~-~v~~ia~G~~hs~alt~~G~v~~wG~n~~GqLG  379 (423)
T 3mvd_K          307 VILTTDLKCSVVGRPEYGRLGLGDVKDV-VEKPTIVKKL-----TE-KIVSVGCGEVCSYAVTIDGKLYSWGSGVNNQLG  379 (423)
T ss_dssp             EEEETTCCEEEEECCGGGTTCSSSCCSC-EEEEEECTTC-----CS-CEEEEEEETTEEEEEETTSCEEEEECCTTSCSS
T ss_pred             EEEeCCCcEEEEECCCCCCCCCCCcccc-ccCceEeccC-----CC-CEEEEEcCCCeEEEEcCCCCEEEECCCCCCCCC
Confidence            9999999999999999999999876543 3467777655     22 899999999999999999999999999999999


Q ss_pred             CCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCC
Q psy1607         176 MGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEH  218 (241)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~  218 (241)
                      +++.. ....|+++.. ....+.+|++|+||.+|+++|+.+++
T Consensus       380 ~g~~~-~~~~P~~v~~-~~~~~~~v~~va~G~~ht~~l~~~~k  420 (423)
T 3mvd_K          380 VGDGD-DELEPIVVVS-KNTQGKHMLLASGGGQHAIFLVKADK  420 (423)
T ss_dssp             SSSSC-CEEEEEECCS-TTTTTCCEEEEEECSSEEEEEEECC-
T ss_pred             CCCCC-CcccCeEEeC-cccCCCEEEEEEECCCcEEEEEcccc
Confidence            99874 3556777663 23455679999999999999999874

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=100.00  E-value=2.3e-32  Score=229.03  Aligned_cols=190  Identities=29%  Similarity=0.366  Sum_probs=129.4

Q ss_pred             CCccccCceeEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeE
Q psy1607           7 SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVV   86 (241)
Q Consensus         7 ~g~l~~~g~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~   86 (241)
                      +|+++.||.+..-..-++.....+|++|+||.+|+++|+ +|+||+||.|.+||||.+..          +    ..+|+
T Consensus        41 ~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~~Gqlg~P~~----------~----~~~v~  105 (282)
T 3qhy_B           41 GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAE----------A----RSGVD  105 (282)
T ss_dssp             TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG----------G----SSSEE
T ss_pred             CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCCCCCCCCCcc----------c----CCCeE
Confidence            455555554333222222233346777777777777775 77777777777777775321          1    13577


Q ss_pred             EEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCcee-----------------------------eCCccccccccC
Q psy1607          87 QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVV-----------------------------HDPHPMSWSEDF  137 (241)
Q Consensus        87 ~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~-----------------------------~~p~~v~~~~~~  137 (241)
                      +|+||.+|+++|+ +|+||+||.|.++||+........+                             ..|..       
T Consensus       106 ~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~~-------  177 (282)
T 3qhy_B          106 AIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAE-------  177 (282)
T ss_dssp             EEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSCCGG-------
T ss_pred             EEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEEEECCEEEEecCCCCCCCCCcee-------
Confidence            7777777777777 7777777777777776543211000                             01222       


Q ss_pred             CCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCC
Q psy1607         138 DSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPE  217 (241)
Q Consensus       138 ~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~  217 (241)
                        ...+|++|+||.+|+++| ++|+||+||.|.+||||....              .  ..+|++|+||.+|+++|+ ++
T Consensus       178 --~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~--------------~--~~~v~~i~~G~~h~~al~-~g  237 (282)
T 3qhy_B          178 --AQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTE--------------A--LSGVSAIASGEWYSLALK-NG  237 (282)
T ss_dssp             --GGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGG--------------G--GSSCCEEEECSSCEEEEE-TT
T ss_pred             --cCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcc--------------c--CCCceEEEcCCCEEEEEE-CC
Confidence              135799999999999999 899999999999999985321              0  124899999999999999 74


Q ss_pred             CC------------CCCceeEEecccccceeeee
Q psy1607         218 HA------------KDSSIVKLFAGHWNSGILVQ  239 (241)
Q Consensus       218 ~~------------~~~~~~~~~~~~~~s~~~~~  239 (241)
                      ..            ....+..|.+|..++.+|+.
T Consensus       238 ~v~~wG~n~~gq~~v~~~v~~iaaG~~h~~al~~  271 (282)
T 3qhy_B          238 KVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG  271 (282)
T ss_dssp             EEEEESTTCCCCGGGSSCEEEEEECSSCEEEEEC
T ss_pred             EEEEecCCCCccccCCCCcEEEEECcCeEEEEec
Confidence            22            25568889999999999975

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=100.00  E-value=5.6e-32  Score=226.70  Aligned_cols=171  Identities=32%  Similarity=0.420  Sum_probs=126.6

Q ss_pred             CccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEE
Q psy1607          28 DLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAW  107 (241)
Q Consensus        28 ~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~  107 (241)
                      ..+|++|+||..|+++|+ +|+||+||.|.+||||.+...              ..+|++|+||.+|+++|+ +|+||+|
T Consensus        23 ~~~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~p~~~--------------~~~i~~ia~G~~hs~~l~-~G~v~~w   86 (282)
T 3qhy_B           23 QSGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT--------------QSGVDAIAAGNYHSLALK-DGEVIAW   86 (282)
T ss_dssp             SSSCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSCCGGG--------------GSCCCEEEECSSEEEEEE-TTEEEEE
T ss_pred             cCCCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCCCccC--------------CCCEEEEEeCCCEEEEEE-CCEEEEe
Confidence            347999999999999998 999999999999999998764              126899999999999996 9999999


Q ss_pred             eCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecce
Q psy1607         108 GWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMT  187 (241)
Q Consensus       108 G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~  187 (241)
                      |.|.+||||.          |..+.         .+|++|+||.+|+++|+ +|+||+||.|.+||||.....  .....
T Consensus        87 G~n~~Gqlg~----------P~~~~---------~~v~~ia~G~~hs~al~-~G~v~~wG~n~~gqlg~~~~~--~~~i~  144 (282)
T 3qhy_B           87 GGNEDGQTTV----------PAEAR---------SGVDAIAAGAWASYALK-DGKVIAWGDDSDGQTTVPAEA--QSGVT  144 (282)
T ss_dssp             ECCTTSTTCC----------CGGGS---------SSEEEEEEETTEEEEEE-TTEEEEEECCTTSTTSCCGGG--GSSEE
T ss_pred             eCCCCCCCCC----------CcccC---------CCeEEEECcCCEEEEEe-CCeEEEecCCCCCcCCCCccC--CCCeE
Confidence            9999999995          44442         25788888888888888 888888888888888754211  00000


Q ss_pred             Ee--------------------------cccccccCcCeeEEeccCCeeEEEecCCCC----------------CCCcee
Q psy1607         188 RL--------------------------SVPEHVKNCPIVKLFAEHWNSARLSVPEHA----------------KDSSIV  225 (241)
Q Consensus       188 ~~--------------------------~~~~~~~~~~i~~vacG~~~s~~lt~~~~~----------------~~~~~~  225 (241)
                      .+                          ..+. ....+|++|+||.+|+++| .++..                ....+.
T Consensus       145 ~i~~G~~~~~~l~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~  222 (282)
T 3qhy_B          145 ALDGGVYTALAVKNGGVIAWGDNYFGQTTVPA-EAQSGVDDVAGGIFHSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVS  222 (282)
T ss_dssp             EEEECSSEEEEEETTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSEEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCC
T ss_pred             EEEcccCEEEEEECCEEEEecCCCCCCCCCce-ecCCCeEEEEecCCEEEEE-ECCeEEEEECCCCCCCCCCcccCCCce
Confidence            00                          0011 1123588888888888888 55311                134566


Q ss_pred             EEecccccceeee
Q psy1607         226 KLFAGHWNSGILV  238 (241)
Q Consensus       226 ~~~~~~~~s~~~~  238 (241)
                      +|.+|..++.+|+
T Consensus       223 ~i~~G~~h~~al~  235 (282)
T 3qhy_B          223 AIASGEWYSLALK  235 (282)
T ss_dssp             EEEECSSCEEEEE
T ss_pred             EEEcCCCEEEEEE
Confidence            7888888887776

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=97.12  E-value=0.0013  Score=52.91  Aligned_cols=72  Identities=15%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             ccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEe
Q psy1607          29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG  108 (241)
Q Consensus        29 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G  108 (241)
                      ..|.+|+--..|..++--+++++.+|+++.||+-.+...               -++.++.+|..+++-+..-+.+..||
T Consensus       309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta---------------gPfla~~AG~~fTVTVn~~nyv~FWG  373 (400)
T 4gbf_A          309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA---------------GPYIQLAAGHNFTVTVNTLNQVMFWG  373 (400)
T ss_dssp             SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG---------------CCEEEEEECSSEEEEEETTCCEEEEE
T ss_pred             CccccccccccceEEEecCceeEEeccCCCCceecCCCc---------------chHHhHhccCCeEEEEeceeeEEEec
Confidence            467788888999999999999999999999998776543               36889999999999999999999999


Q ss_pred             CCCCCcc
Q psy1607         109 WNNGGQV  115 (241)
Q Consensus       109 ~n~~gql  115 (241)
                      +.-...|
T Consensus       374 DSPDNSL  380 (400)
T 4gbf_A          374 DSPDNSL  380 (400)
T ss_dssp             CCTTSTT
T ss_pred             CCCCcce
Confidence            8544333

>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz}

Probab=96.95  E-value=0.0019  Score=51.94  Aligned_cols=73  Identities=22%  Similarity=0.170  Sum_probs=62.0

Q ss_pred             CCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCc
Q psy1607          83 LGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNS  162 (241)
Q Consensus        83 ~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~  162 (241)
                      .++-.|+.-+.|.+++--+++++.+|+|++||+-+....                    .++.++.+|.++++-+...+.
T Consensus       309 n~i~~VsG~y~H~vvi~gd~el~sFG~~sNGQ~~ip~ta--------------------gPfla~~AG~~fTVTVn~~ny  368 (400)
T 4gbf_A          309 NPIGGVSGLYTHYTVMYGDGQIAFFGNNDNGQCDVDDHA--------------------GPYIQLAAGHNFTVTVNTLNQ  368 (400)
T ss_dssp             SCCCCCBCSSSEEEC-CTTTCCCEEECCTTSTTCCCGGG--------------------CCEEEEEECSSEEEEEETTCC
T ss_pred             CccccccccccceEEEecCceeEEeccCCCCceecCCCc--------------------chHHhHhccCCeEEEEeceee
Confidence            468889999999999999999999999999998653222                    368999999999999999999


Q ss_pred             EEEEecCCCCccc
Q psy1607         163 LWGCGWNEYNQLS  175 (241)
Q Consensus       163 v~~wG~n~~gqlG  175 (241)
                      +-.||+.....|-
T Consensus       369 v~FWGDSPDNSLL  381 (400)
T 4gbf_A          369 VMFWGDSPDNSLL  381 (400)
T ss_dssp             EEEEECCTTSTTC
T ss_pred             EEEecCCCCccee
Confidence            9999998766664

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=83.17  E-value=18  Score=29.83  Aligned_cols=133  Identities=11%  Similarity=-0.027  Sum_probs=74.3

Q ss_pred             CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC-----CCeEEEEEc
Q psy1607          28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG-----GWHSAARTQ  100 (241)
Q Consensus        28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G-----~~~s~~lt~  100 (241)
                      +..+..  ++...++.+++|+.|++|..-...-...+.....   .+....+...++++|+.+..-     ..+.+++|+
T Consensus        38 ~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G---~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~  114 (323)
T 1wp5_A           38 TDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLG---QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTR  114 (323)
T ss_dssp             TCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCC---EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEET
T ss_pred             CCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCC---cChhhccCCCCCCEEEEEEEecccCCCceEEEEeC
Confidence            344444  5567889999999999999887655444433222   111111222245677765433     235788999


Q ss_pred             CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEE--EEccCCceEEEecCCcEEEEecCCCCccc
Q psy1607         101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD--VACGSRHTLALCDDNSLWGCGWNEYNQLS  175 (241)
Q Consensus       101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~--i~~G~~h~~~lt~~g~v~~wG~n~~gqlG  175 (241)
                      +|.+--.-...+..... ....      ..+.+.     .+..++.  +..+..+.+++|++|+++-+-.++--..|
T Consensus       115 ~G~iKrt~l~e~~~~~r-~~G~------~ai~l~-----e~d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~g  179 (323)
T 1wp5_A          115 NGMVKKTELKHYKAQRY-SKPL------TGINLK-----NDDQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVG  179 (323)
T ss_dssp             TSEEEEEEGGGGCCSCC-SSCE------ECSCCC-----TTCCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             CCeEEEeEHHHhhhccc-cCce------EEEEeC-----CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccC
Confidence            99888765443322110 0000      011221     1234443  33467789999999999887665443333

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=83.03  E-value=18  Score=29.64  Aligned_cols=133  Identities=10%  Similarity=-0.010  Sum_probs=74.3

Q ss_pred             CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcC-----CCeEEEEEc
Q psy1607          28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAG-----GWHSAARTQ  100 (241)
Q Consensus        28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G-----~~~s~~lt~  100 (241)
                      +..+..  +..+.++.+++|+.|++|..-...-...+.....   ......+...++.+|+.+...     ..+.+++|+
T Consensus        46 ~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~G---~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~  122 (312)
T 1suu_A           46 GDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASKG---QNISELINLGDQEEILTIKNSKDLTDDAYLLLTTA  122 (312)
T ss_dssp             TCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC----------CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEET
T ss_pred             CCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCCC---cChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeC
Confidence            344544  4556788999999999999886554433332211   111112222356677777654     456789999


Q ss_pred             CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEE--ccCCceEEEecCCcEEEEecCCCCcccC
Q psy1607         101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA--CGSRHTLALCDDNSLWGCGWNEYNQLSM  176 (241)
Q Consensus       101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~--~G~~h~~~lt~~g~v~~wG~n~~gqlG~  176 (241)
                      +|.++-.-...+....  ....      ..+.+.     .+..++.+.  .+..+.+++|++|.++-+-..+.-..|.
T Consensus       123 ~G~~kr~~l~~~~~~r--~~G~------~~i~L~-----~~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR  187 (312)
T 1suu_A          123 SGKIARFESTDFKAVK--SRGV------IVIKLN-----DKDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNR  187 (312)
T ss_dssp             TSEEEEEEGGGGCC------CE------ECBCCC-----TTCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             CCeEEEEEHHHhhccC--CCcE------EEEecC-----CCCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCC
Confidence            9999987654431110  0000      011222     234555543  3566789999999988876655444333

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=81.94  E-value=18  Score=29.02  Aligned_cols=124  Identities=12%  Similarity=0.016  Sum_probs=72.2

Q ss_pred             CCccEEEEecC--CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEc---CCCeEEEEEcC
Q psy1607          27 LDLVVTDIACG--FDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA---GGWHSAARTQD  101 (241)
Q Consensus        27 ~~~~i~~i~~G--~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~---G~~~s~~lt~~  101 (241)
                      .+..+..+..+  .++.+++|++|++|.--........   ..  .      + ...+++|+.+.+   .....+++|++
T Consensus        22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~---~~--~------l-l~~~e~i~~v~~~~~~~~~~v~~T~~   89 (276)
T 3no0_A           22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGS---KV--S------L-KSREEKIVGAFIREKFGNRLLLATKK   89 (276)
T ss_dssp             SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSE---EC--C------C-SSTTCCEEEEEEGGGSCSEEEEEETT
T ss_pred             CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCc---cc--c------c-CCCCCEEEEEECCcCCCCEEEEEeCC
Confidence            45556665544  4668899999999976543221110   00  0      2 225678888865   23578899999


Q ss_pred             CCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEE--ccCCceEEEecCCcEEEEecCCCCcccC
Q psy1607         102 GFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA--CGSRHTLALCDDNSLWGCGWNEYNQLSM  176 (241)
Q Consensus       102 g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~--~G~~h~~~lt~~g~v~~wG~n~~gqlG~  176 (241)
                      |.+.-.-...+.+-    ...     ...+.+.     .+..++.+.  .+..+.+++|++|++|-+-..+.-..|.
T Consensus        90 G~iKr~~l~~~~~~----~~G-----~~~i~lk-----egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR  152 (276)
T 3no0_A           90 GYVKKIPLAEFEYK----AQG-----MPIIKLT-----EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTP  152 (276)
T ss_dssp             SEEEEEEGGGTTTC----STT-----EECSCCC-----TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred             CEEEEEEHHHhhhh----cCC-----eEEEecC-----CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCC
Confidence            99987765444210    000     1112222     233555543  3556789999999999986655444443

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=80.93  E-value=22  Score=29.35  Aligned_cols=126  Identities=11%  Similarity=0.034  Sum_probs=72.7

Q ss_pred             CccEEE--EecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCC-----CeEEEEEc
Q psy1607          28 DLVVTD--IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGG-----WHSAARTQ  100 (241)
Q Consensus        28 ~~~i~~--i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~-----~~s~~lt~  100 (241)
                      +..+..  .+...++.+++|+.|++|..-...-...+.....   .+....+....+++|+.+....     ...+++|+
T Consensus        41 ~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G---~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~  117 (327)
T 3uc1_A           41 DDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG---QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATR  117 (327)
T ss_dssp             GGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC---EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEET
T ss_pred             CCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC---EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcC
Confidence            334544  4456788888999999998876544433322211   1111122223567888876654     46789999


Q ss_pred             CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEE--EEccCCceEEEecCCcEEEEecC
Q psy1607         101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD--VACGSRHTLALCDDNSLWGCGWN  169 (241)
Q Consensus       101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~--i~~G~~h~~~lt~~g~v~~wG~n  169 (241)
                      +|.+.-.-...+....   ...     ...+.+.     .+..++.  ++.+..+.+++|++|++|-+-..
T Consensus       118 ~G~iKr~~l~~~~~~~---r~G-----~~~i~lk-----e~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~  175 (327)
T 3uc1_A          118 NGLVKKSKLTDFDSNR---SGG-----IVAVNLR-----DNDELVGAVLCSAGDDLLLVSANGQSIRFSAT  175 (327)
T ss_dssp             TSEEEEEEGGGGCCCC---SSC-----EESCBCC-----TTCCEEEEEEECTTCEEEEEETTSEEEEEECC
T ss_pred             CCEEEEeEHHHhhccc---cCc-----eEEEEEC-----CCCEEEEEEEecCCCEEEEEECCCeEEEEECc
Confidence            9988876544332110   000     0112221     1234443  34567789999999999988776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	241
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	3e-17
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	3e-16
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	6e-14
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	3e-12
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	5e-09
d1a12a_	401	b.69.5.1 (A:) Regulator of chromosome condensation	7e-08
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	1e-07
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	7e-06
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	2e-04
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	0.001
d1jtdb_	273	b.69.5.2 (B:) beta-lactamase inhibitor protein-II,	0.004

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.9 bits (190), Expect = 3e-17
 Identities = 28/129 (21%), Positives = 50/129 (38%), Gaps = 3/129 (2%)

Query: 40  HCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAART 99
           H    T+ G+V + G G  GQLG   +  +   +P  +       VVQ  AGG H+   +
Sbjct: 7   HRSHSTEPGLVLTLGQGDVGQLGLGENVMERK-KPALVSIPED--VVQAEAGGMHTVCLS 63

Query: 100 QDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCD 159
           + G +Y++G N+ G +G +  ++     P  +   E     +      A  +        
Sbjct: 64  KSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLW 123

Query: 160 DNSLWGCGW 168
            +     G 
Sbjct: 124 GSFRDNNGV 132

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 3e-16
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 8/162 (4%)

Query: 1   MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQ 60
           + ++   G     S                    + G  H + +  EG  +S G    G+
Sbjct: 246 LSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGR 305

Query: 61  LGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGK 120
           LG      + ++ P  I  L    V  ++ G     A T+DG ++AWG     Q+G    
Sbjct: 306 LGLGEGAEEKSI-PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD 362

Query: 121 LDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNS 162
            D     P  M        +N  V+ V+ G +HT+ L  D  
Sbjct: 363 ED--AWSPVEMMGK---QLENRVVLSVSSGGQHTVLLVKDKE 399

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 6e-14
 Identities = 41/205 (20%), Positives = 76/205 (37%), Gaps = 10/205 (4%)

Query: 7   SGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSS 66
            G  ++L     M         +   D  CG     A++ EG V+ +G  +  QLG P +
Sbjct: 198 QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGT 257

Query: 67  GTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVH 126
            +    +       S    V  S G  H+     +G  Y+ G    G++G+ G+      
Sbjct: 258 ESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGL-GEGAEEKS 316

Query: 127 DPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVM 186
            P  +S           V  VACG+    A+  D  ++  G     QL  G G  + +  
Sbjct: 317 IPTLISRLP-------AVSSVACGASVGYAVTKDGRVFAWGMGTNYQL--GTGQDEDAWS 367

Query: 187 TRLSVPEHVKNCPIVKLFAEHWNSA 211
               + + ++N  ++ + +   ++ 
Sbjct: 368 PVEMMGKQLENRVVLSVSSGGQHTV 392

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-12
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)

Query: 94  HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRH 153
           H +  T+ G +   G  + GQ+G+ G+  +    P  +S  ED       VV    G  H
Sbjct: 7   HRSHSTEPGLVLTLGQGDVGQLGL-GENVMERKKPALVSIPED-------VVQAEAGGMH 58

Query: 154 TLALCDDNSLWGCGWNEYNQL 174
           T+ L     ++  G N+   L
Sbjct: 59  TVCLSKSGQVYSFGCNDEGAL 79

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 5e-09
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 8/172 (4%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISA 90
           V     G  H + L++ G V+S+G    G LG  +S   + M P ++     +  V    
Sbjct: 49  VVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGD 108

Query: 91  GGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACG 150
               +       FL+    +N G +G        + +P   S        ++ VV VA G
Sbjct: 109 SHTAALTDDGRVFLWGSFRDNNGVIG--------LLEPMKKSMVPVQVQLDVPVVKVASG 160

Query: 151 SRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVK 202
           + H + L  D  L+  G  E  QL     +       +      V  C ++K
Sbjct: 161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLK 212

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (118), Expect = 7e-08
 Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 19/210 (9%)

Query: 1   MCDHLASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQ 60
                 +G + +L  +      +   LD+ V  +A G DH + LT +G +++ G G +GQ
Sbjct: 124 GSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQ 183

Query: 61  LGYPSSGTDAN--------------MEPREIRALSGLGVVQISAGGWHSAARTQDGFLYA 106
           LG                       +  +   +   +       G + + A + +G +Y 
Sbjct: 184 LGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYG 243

Query: 107 WGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGC 166
           +G +N  Q+G  G                 F +     V  + G  HT+ +  +   +  
Sbjct: 244 FGLSNYHQLGTPGT-----ESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSL 298

Query: 167 GWNEYNQLSMGCGVSQVSVMTRLSVPEHVK 196
           G  EY +L +G G  + S+ T +S    V 
Sbjct: 299 GRAEYGRLGLGEGAEEKSIPTLISRLPAVS 328

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 20/95 (21%), Positives = 34/95 (35%), Gaps = 15/95 (15%)

Query: 34  IACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGW 93
              G        ++G V +WG+    Q   P+                  GV  I++G W
Sbjct: 186 DVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS--------------GVSAIASGEW 231

Query: 94  HSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDP 128
           +S A   +G + AWG +      V+  +  +   P
Sbjct: 232 YSLALK-NGKVIAWGSSRTAPSSVQSGVSSIEAGP 265

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 43.6 bits (101), Expect = 7e-06
 Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 20/98 (20%)

Query: 87  QISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVD 146
              AGG   +   +DG + AWG N   Q  V  +                       V  
Sbjct: 185 DDVAGGIFHSLALKDGKVIAWGDNRYKQTTVPTEALS-------------------GVSA 225

Query: 147 VACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVS 184
           +A G  ++LAL  +  +   G +     S+  GVS + 
Sbjct: 226 IASGEWYSLAL-KNGKVIAWGSSRTAPSSVQSGVSSIE 262

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 39.0 bits (89), Expect = 2e-04
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 31  VTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSG 82
           V+ IA G  + LAL   G V +WG+         S  +     P    AL G
Sbjct: 223 VSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALKG 273

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 37.0 bits (84), Expect = 0.001
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 14/68 (20%)

Query: 50  VFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGW 109
           V +WG  +                   + A +  GV  I+ G +H  A  + G +  WG 
Sbjct: 6   VVAWGGNNDWG-------------EATVPAEAQSGVDAIAGGYFHGLA-LKGGKVLGWGA 51

Query: 110 NNGGQVGV 117
           N  GQ+ +
Sbjct: 52  NLNGQLTM 59

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 21/79 (26%)

Query: 101 DGFLYAWGWNN-GGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCD 159
              + AWG NN  G+  V  +                       V  +A G  H LAL  
Sbjct: 3   ATSVVAWGGNNDWGEATVPAEA-------------------QSGVDAIAGGYFHGLAL-K 42

Query: 160 DNSLWGCGWNEYNQLSMGC 178
              + G G N   QL+M  
Sbjct: 43  GGKVLGWGANLNGQLTMPA 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	241
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	100.0
d1a12a_	401	Regulator of chromosome condensation RCC1 {Human (	100.0
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	99.95
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	99.91
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	91.07
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	90.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	81.63

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-33  Score=239.95  Aligned_cols=180  Identities=21%  Similarity=0.313  Sum_probs=152.2

Q ss_pred             CCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecC--CCCeEEEEcCCCeEEEEEcCCCE
Q psy1607          27 LDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALS--GLGVVQISAGGWHSAARTQDGFL  104 (241)
Q Consensus        27 ~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~--~~~i~~I~~G~~~s~~lt~~g~v  104 (241)
                      ...+|.+|+||.+|+++|+++|++|.||.+.++++|.....  ....+..+..+.  ...++.+++|..|+++|+++|+|
T Consensus       218 ~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~--~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v  295 (401)
T d1a12a_         218 GHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTE--SCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKA  295 (401)
T ss_dssp             SBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCS--CEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCE
T ss_pred             CCceEEEEEecCCeEEEEecCCeEeeecccceecccccccc--cceeccccccccccceeEEEEeeeccceeeeccCCCE
Confidence            45689999999999999999999999999999999998766  445555555443  35799999999999999999999


Q ss_pred             EEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCcee
Q psy1607         105 YAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVS  184 (241)
Q Consensus       105 y~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~  184 (241)
                      |+||.|.++|||.+..... ...|+.++..       .+|++|+||.+|+++|+++|+||+||+|.+||||+++. ....
T Consensus       296 ~~wG~n~~gqlG~g~~~~~-~~~P~~i~~~-------~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~-~~~~  366 (401)
T d1a12a_         296 YSLGRAEYGRLGLGEGAEE-KSIPTLISRL-------PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQD-EDAW  366 (401)
T ss_dssp             EEEECCGGGTTCSCTTCCC-EEEEEECCSS-------SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSC-SCEE
T ss_pred             EEecccccCccCCCccccc-ccCCEEcCCC-------CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCC-CCEe
Confidence            9999999999998865543 4567777654       57999999999999999999999999999999999987 4466


Q ss_pred             cceEecccccccCcCeeEEeccCCeeEEEecCCC
Q psy1607         185 VMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEH  218 (241)
Q Consensus       185 ~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~  218 (241)
                      .|+++.. ....+.+|.+|+||.+||++|+.+++
T Consensus       367 ~P~~v~~-~~~~~~~v~~v~~G~~hs~~l~~d~~  399 (401)
T d1a12a_         367 SPVEMMG-KQLENRVVLSVSSGGQHTVLLVKDKE  399 (401)
T ss_dssp             EEEECCS-TTTTTEEEEEEEECSSEEEEEEEECS
T ss_pred             cCEEeec-cCCCCCEEEEEEEccceEEEEEECCc
Confidence            6777653 34456679999999999999998864

>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-31  Score=230.23  Aligned_cols=214  Identities=21%  Similarity=0.298  Sum_probs=151.3

Q ss_pred             eEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEee-----------------
Q psy1607          16 VFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIR-----------------   78 (241)
Q Consensus        16 ~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~-----------------   78 (241)
                      ....|.+++.+.  +|++|+||.+|+++|+++|+||+||.|.+||||.+.......+.|..+.                 
T Consensus        36 ~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~  113 (401)
T d1a12a_          36 ERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAA  113 (401)
T ss_dssp             EEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEECCCCSCEEEEEECSSEEEE
T ss_pred             eeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccccccccccccccceeeecccccceee
Confidence            455777777665  5999999999999999999999999999999998765522222222111                 


Q ss_pred             ----------------------------------ecCCCCeEEEEcCCCeEEEEEcCCCEEEEeCCCCCccCCCCCCC--
Q psy1607          79 ----------------------------------ALSGLGVVQISAGGWHSAARTQDGFLYAWGWNNGGQVGVEGKLD--  122 (241)
Q Consensus        79 ----------------------------------~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~--  122 (241)
                                                        ...+.+|++|+||..|+++++++|++|+||.|.++|+|......  
T Consensus       114 ~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~  193 (401)
T d1a12a_         114 LTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGRVPELFAN  193 (401)
T ss_dssp             EETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECCSSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCGGGTSS
T ss_pred             ccccccceeccccccccccccccCCccccceeeeeccCCceeEEEecccceeeeecCCcccccccCCccccCCCCccccc
Confidence                                              11123566666777777777777777777777777776432110  


Q ss_pred             ---------------------------cee-------------------------------------eCCccccccccCC
Q psy1607         123 ---------------------------LVV-------------------------------------HDPHPMSWSEDFD  138 (241)
Q Consensus       123 ---------------------------~~~-------------------------------------~~p~~v~~~~~~~  138 (241)
                                                 ...                                     ..|..+...   .
T Consensus       194 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v~~~g~n~~g~~g~~~~~~~~~~~~~~~~---~  270 (401)
T d1a12a_         194 RGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGLSNYHQLGTPGTESCFIPQNLTSF---K  270 (401)
T ss_dssp             SCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCEEEEECCTTSTTSCSSCSCEEEEEECGGG---C
T ss_pred             cCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeEeeecccceecccccccccceeccccccc---c
Confidence                                       000                                     000111100   2


Q ss_pred             CCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCeeEEEecCCC
Q psy1607         139 SQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARLSVPEH  218 (241)
Q Consensus       139 ~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~lt~~~~  218 (241)
                      .....++.+++|..|+++++++|+||+||.|.+||||.+........|..++..     .+|++|+||.+|+++|+.++.
T Consensus       271 ~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~~~~~~~P~~i~~~-----~~i~~Is~G~~hs~alt~dG~  345 (401)
T d1a12a_         271 NSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIPTLISRL-----PAVSSVACGASVGYAVTKDGR  345 (401)
T ss_dssp             CTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEEEECCSS-----SSEEEEEECSSEEEEEETTSC
T ss_pred             ccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcccccccCCEEcCCC-----CCeEEEEeeCCEEEEEeCCCe
Confidence            234579999999999999999999999999999999999876667777766533     259999999999999999942


Q ss_pred             C------------------------------CCCceeEEecccccceeeee
Q psy1607         219 A------------------------------KDSSIVKLFAGHWNSGILVQ  239 (241)
Q Consensus       219 ~------------------------------~~~~~~~~~~~~~~s~~~~~  239 (241)
                      .                              ....+..+.+|.++|.+|+.
T Consensus       346 v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~~~~~~v~~v~~G~~hs~~l~~  396 (401)
T d1a12a_         346 VFAWGMGTNYQLGTGQDEDAWSPVEMMGKQLENRVVLSVSSGGQHTVLLVK  396 (401)
T ss_dssp             EEEEECCTTSTTCSSSCSCEEEEEECCSTTTTTEEEEEEEECSSEEEEEEE
T ss_pred             EEEEecCCCCCCCCCCCCCEecCEEeeccCCCCCEEEEEEEccceEEEEEE
Confidence            1                              11236678999999999875

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.95  E-value=1.1e-27  Score=197.44  Aligned_cols=176  Identities=32%  Similarity=0.399  Sum_probs=128.3

Q ss_pred             ccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEe
Q psy1607          29 LVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWG  108 (241)
Q Consensus        29 ~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G  108 (241)
                      ..|++|+||.+|+++|+ +|+||+||.|.+||||.+...              ..+|++|+||..|+++|+ +|+||+||
T Consensus        26 ~~i~~va~G~~h~~al~-dG~v~~wG~N~~GQlG~~~~~--------------~~~v~~v~~G~~~~~al~-dg~v~~wG   89 (273)
T d1jtdb_          26 SGVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTMPAAT--------------QSGVDAIAAGNYHSLALK-DGEVIAWG   89 (273)
T ss_dssp             SSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTSCCGGG--------------GSCCCEEEECSSEEEEEE-TTEEEEEE
T ss_pred             CCcEEEEccCCEEEEEE-CCEEEEEeCCCCCceeeeecc--------------cccceEEecCCCceeeee-eeeeeccC
Confidence            46999999999999998 799999999999999986543              235789999999999997 89999999


Q ss_pred             CCCCCccCCCCCCCcee-----------------------------eCCcccc--------------cccc---------
Q psy1607         109 WNNGGQVGVEGKLDLVV-----------------------------HDPHPMS--------------WSED---------  136 (241)
Q Consensus       109 ~n~~gqlg~~~~~~~~~-----------------------------~~p~~v~--------------~~~~---------  136 (241)
                      .|.++|++.........                             ..|....              +..+         
T Consensus        90 ~~~~gq~~~~~~~~~~~~~i~~~~~~~~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~  169 (273)
T d1jtdb_          90 GNEDGQTTVPAEARSGVDAIAAGAWASYALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDN  169 (273)
T ss_dssp             CCTTSTTCCCGGGGSSCCEEEEETTEEEEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECC
T ss_pred             CCcceeeccccccccceeEEeeecccccccccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEeecc
Confidence            99999987542211000                             0000000              0000         


Q ss_pred             -------CCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCCCceecceEecccccccCcCeeEEeccCCe
Q psy1607         137 -------FDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGVSQVSVMTRLSVPEHVKNCPIVKLFAEHWN  209 (241)
Q Consensus       137 -------~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~~~~~~~~~~~~~~~~~~~~i~~vacG~~~  209 (241)
                             ......+|++|+||.+|+++|+ +|+||+||.|.+|||+....              ..  ..|++|+||..|
T Consensus       170 ~~g~~~~~~~~~~~v~~Is~G~~h~~~l~-dG~v~~WG~n~~Gql~~~~~--------------~~--~~v~~I~~G~~~  232 (273)
T d1jtdb_         170 YFGQTTVPAEAQSGVDDVAGGIFHSLALK-DGKVIAWGDNRYKQTTVPTE--------------AL--SGVSAIASGEWY  232 (273)
T ss_dssp             TTSTTSCCGGGSSSEEEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGG--------------GG--SSCCEEEECSSC
T ss_pred             cCCcccccccccCCccceeccceeeEEEe-cCcEEEcCCCCCCccCCCcc--------------CC--CCcEEEEeCcce
Confidence                   0123457999999999999998 79999999999999976321              11  138899999999


Q ss_pred             eEEEecCCCC------------CCCceeEEecccccceeee
Q psy1607         210 SARLSVPEHA------------KDSSIVKLFAGHWNSGILV  238 (241)
Q Consensus       210 s~~lt~~~~~------------~~~~~~~~~~~~~~s~~~~  238 (241)
                      +++|+ ++..            ....+.+|.++.-+..+|.
T Consensus       233 ~~~l~-~g~v~~WG~~~~~~~~~~~~~~~i~~~~~~~~al~  272 (273)
T d1jtdb_         233 SLALK-NGKVIAWGSSRTAPSSVQSGVSSIEAGPNAAYALK  272 (273)
T ss_dssp             EEEEE-TTEEEEESTTCCCCGGGSSCEEEEEECSSCEEEEE
T ss_pred             EEEEE-CCEEEEECCCCCCCCCCCCCceeEEeCcceEEEec
Confidence            99996 5321            3445666777666666553

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=99.91  E-value=1.2e-24  Score=179.13  Aligned_cols=167  Identities=26%  Similarity=0.296  Sum_probs=123.0

Q ss_pred             CCCCccccCceeEecCeeeeccCCccEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCC---------------
Q psy1607           5 LASGPLKMLSQVFHMPSRMDHFLDLVVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTD---------------   69 (241)
Q Consensus         5 ~~~g~l~~~g~~~~~p~~i~~~~~~~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~---------------   69 (241)
                      +.+|+|..||.+..--.-++......|++|+||..|+++|+ +|++|+||.+.++|++.+.....               
T Consensus        41 l~dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~~~~al~-dg~v~~wG~~~~gq~~~~~~~~~~~~~i~~~~~~~~~~  119 (273)
T d1jtdb_          41 LKGGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHSLALK-DGEVIAWGGNEDGQTTVPAEARSGVDAIAAGAWASYAL  119 (273)
T ss_dssp             EETTEEEEEECCTTSTTSCCGGGGSCCCEEEECSSEEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEEETTEEEEE
T ss_pred             EECCEEEEEeCCCCCceeeeecccccceEEecCCCceeeee-eeeeeccCCCcceeeccccccccceeEEeeeccccccc
Confidence            34778887776554322233344567899999999999997 89999999999999986422100               


Q ss_pred             --------------CCccCe-----------------------------------EeeecCCCCeEEEEcCCCeEEEEEc
Q psy1607          70 --------------ANMEPR-----------------------------------EIRALSGLGVVQISAGGWHSAARTQ  100 (241)
Q Consensus        70 --------------~~~~p~-----------------------------------~v~~~~~~~i~~I~~G~~~s~~lt~  100 (241)
                                    ....|.                                   .+......+|++|+||.+|+++|+ 
T Consensus       120 ~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~g~~~~~G~~~~g~~~~~~~~~~~v~~Is~G~~h~~~l~-  198 (273)
T d1jtdb_         120 KDGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALAVKNGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLALK-  198 (273)
T ss_dssp             ETTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEEETTEEEEEECCTTSTTSCCGGGSSSEEEEEECSSEEEEEE-
T ss_pred             ccccceecccCCCCceeeeccCCceEEEEeccceeeeeecccceeEeecccCCcccccccccCCccceeccceeeEEEe-
Confidence                          000000                                   000111247999999999999998 


Q ss_pred             CCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEEccCCceEEEecCCcEEEEecCCCCcccCCCCC
Q psy1607         101 DGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVACGSRHTLALCDDNSLWGCGWNEYNQLSMGCGV  180 (241)
Q Consensus       101 ~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~~G~~h~~~lt~~g~v~~wG~n~~gqlG~~~~~  180 (241)
                      +|+||+||.|.+||++.+          .  +..       .+|++|+||.+|+++|+ +|+||+||.|..++++...  
T Consensus       199 dG~v~~WG~n~~Gql~~~----------~--~~~-------~~v~~I~~G~~~~~~l~-~g~v~~WG~~~~~~~~~~~--  256 (273)
T d1jtdb_         199 DGKVIAWGDNRYKQTTVP----------T--EAL-------SGVSAIASGEWYSLALK-NGKVIAWGSSRTAPSSVQS--  256 (273)
T ss_dssp             TTEEEEEECCTTSTTCCC----------G--GGG-------SSCCEEEECSSCEEEEE-TTEEEEESTTCCCCGGGSS--
T ss_pred             cCcEEEcCCCCCCccCCC----------c--cCC-------CCcEEEEeCcceEEEEE-CCEEEEECCCCCCCCCCCC--
Confidence            799999999999998753          1  111       36899999999999996 8999999999988865432  


Q ss_pred             CceecceEecccccccCcCeeEEeccCCeeEEE
Q psy1607         181 SQVSVMTRLSVPEHVKNCPIVKLFAEHWNSARL  213 (241)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~i~~vacG~~~s~~l  213 (241)
                                        .+.+|.||.+|.++|
T Consensus       257 ------------------~~~~i~~~~~~~~al  271 (273)
T d1jtdb_         257 ------------------GVSSIEAGPNAAYAL  271 (273)
T ss_dssp             ------------------CEEEEEECSSCEEEE
T ss_pred             ------------------CceeEEeCcceEEEe
Confidence                              278999999999987

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=91.07  E-value=0.63  Score=36.70  Aligned_cols=110  Identities=12%  Similarity=0.064  Sum_probs=56.9

Q ss_pred             CCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCC---CeEEEEcCC---CeEEEEEcCCCEEEEeCCC
Q psy1607          38 FDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGL---GVVQISAGG---WHSAARTQDGFLYAWGWNN  111 (241)
Q Consensus        38 ~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~---~i~~I~~G~---~~s~~lt~~g~vy~~G~n~  111 (241)
                      ..|..++..+|+||.+|-....+.+.....    .....+-.....   ++.......   -+..++..+|++|+.|...
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~----~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~   96 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGG----ITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND   96 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCS----EEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCc----eeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC
Confidence            558888999999999996543332221111    111111111111   111222222   2466788899999998543


Q ss_pred             CCccCCCCCCCceeeCCccccccccCCCCCCcEEEE----EccCCceEEEecCCcEEEEecCC
Q psy1607         112 GGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDV----ACGSRHTLALCDDNSLWGCGWNE  170 (241)
Q Consensus       112 ~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i----~~G~~h~~~lt~~g~v~~wG~n~  170 (241)
                      ...       .. ..-|..-           ..+.+    ....+|++++..||+||++|-..
T Consensus        97 ~~~-------~~-~yd~~~~-----------~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~  140 (387)
T d1k3ia3          97 AKK-------TS-LYDSSSD-----------SWIPGPDMQVARGYQSSATMSDGRVFTIGGSW  140 (387)
T ss_dssp             TTC-------EE-EEEGGGT-----------EEEECCCCSSCCSSCEEEECTTSCEEEECCCC
T ss_pred             Ccc-------ee-EecCccC-----------cccccccccccccccceeeecCCceeeecccc
Confidence            211       10 1111110           11111    11347999999999999998653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=90.96  E-value=1.4  Score=34.48  Aligned_cols=74  Identities=14%  Similarity=0.099  Sum_probs=41.0

Q ss_pred             CCeEEEEEcCCCEEEEeCCCCCccCCCCCCCceeeCCccccccccCCCCCCcEEEEE----ccCCceE-EEecCCcEEEE
Q psy1607          92 GWHSAARTQDGFLYAWGWNNGGQVGVEGKLDLVVHDPHPMSWSEDFDSQNIKVVDVA----CGSRHTL-ALCDDNSLWGC  166 (241)
Q Consensus        92 ~~~s~~lt~~g~vy~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~~~~~~i~~i~----~G~~h~~-~lt~~g~v~~w  166 (241)
                      ..|+.++..+|+||+.|-...+.........   ..+..-+..      ..+...++    .-.+|+. +|..||+||++
T Consensus       290 ~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~---~~ve~Ydp~------~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~  360 (387)
T d1k3ia3         290 TFHTSVVLPDGSTFITGGQRRGIPFEDSTPV---FTPEIYVPE------QDTFYKQNPNSIVRVYHSISLLLPDGRVFNG  360 (387)
T ss_dssp             BSCEEEECTTSCEEEECCBSBCCTTCCCSBC---CCCEEEEGG------GTEEEECCCCSSCCCTTEEEEECTTSCEEEE
T ss_pred             ccceeeeccCCeEEEECCcccCccCCCCcEe---ceEEEEECC------CCeEEECCCCCCcccceEEEEECCCCEEEEE
Confidence            4678888889999999876544333221111   111111111      11233332    1235764 56789999999


Q ss_pred             ecCCCCcc
Q psy1607         167 GWNEYNQL  174 (241)
Q Consensus       167 G~n~~gql  174 (241)
                      |-+..+..
T Consensus       361 GG~~~~~~  368 (387)
T d1k3ia3         361 GGGLCGDC  368 (387)
T ss_dssp             ECCCCTTC
T ss_pred             eCCCcCCC
Confidence            98765554

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.63  E-value=7.1  Score=27.79  Aligned_cols=66  Identities=9%  Similarity=0.021  Sum_probs=37.0

Q ss_pred             cEEEEecCCCEEEEEECCCcEEEEeCCCCCCCCCCCCCCCCCccCeEeeecCCCCeEEEEcCCCeEEEEEcCCCEEEEeC
Q psy1607          30 VVTDIACGFDHCLALTQEGIVFSWGNGSRGQLGYPSSGTDANMEPREIRALSGLGVVQISAGGWHSAARTQDGFLYAWGW  109 (241)
Q Consensus        30 ~i~~i~~G~~h~~~lt~~g~v~~~G~n~~gqlg~~~~~~~~~~~p~~v~~~~~~~i~~I~~G~~~s~~lt~~g~vy~~G~  109 (241)
                      .+..++....+.+.-..+|.|..|-.....              +..........+..++......+.-..+|.|+.|-.
T Consensus       180 ~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~v~~~~~~~~~l~sg~~dg~i~iwd~  245 (293)
T d1p22a2         180 GIACLQYRDRLVVSGSSDNTIRLWDIECGA--------------CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDL  245 (293)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTCC--------------EEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEH
T ss_pred             ccccccCCCCeEEEecCCCEEEEEecccce--------------eeeeecccceeeeeccccceEEEEEcCCCEEEEEEC
Confidence            445555555666666777887777542211              111111122345555555556666678899999954